Query 016934
Match_columns 380
No_of_seqs 176 out of 1587
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 04:08:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016934.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016934hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00083 ribF riboflavin kina 100.0 2E-67 4.3E-72 512.6 23.8 243 107-377 1-258 (288)
2 COG0196 RibF FAD synthase [Coe 100.0 1E-63 2.3E-68 488.4 26.2 246 104-377 15-274 (304)
3 PRK05627 bifunctional riboflav 100.0 1.7E-63 3.6E-68 488.6 26.4 245 106-377 15-274 (305)
4 PRK07143 hypothetical protein; 100.0 8.4E-57 1.8E-61 436.2 24.5 228 102-377 13-247 (279)
5 cd02064 FAD_synthetase_N FAD s 100.0 1.3E-44 2.7E-49 329.6 18.7 173 106-297 1-180 (180)
6 PF06574 FAD_syn: FAD syntheta 100.0 2E-38 4.4E-43 284.3 10.4 146 103-267 4-157 (157)
7 cd02169 Citrate_lyase_ligase C 99.9 1.9E-25 4.1E-30 219.0 16.2 160 104-286 114-291 (297)
8 PF01687 Flavokinase: Riboflav 99.9 5.3E-26 1.2E-30 197.3 6.9 87 283-377 1-95 (125)
9 smart00764 Citrate_ly_lig Citr 99.9 2E-24 4.4E-29 198.2 16.0 154 111-287 6-177 (182)
10 cd02172 RfaE_N N-terminal doma 99.9 1.6E-24 3.4E-29 191.6 12.9 132 104-273 4-140 (144)
11 TIGR02199 rfaE_dom_II rfaE bif 99.9 1.4E-23 3.1E-28 185.4 14.7 130 104-273 11-143 (144)
12 TIGR01518 g3p_cytidyltrns glyc 99.9 1.8E-22 4E-27 173.6 11.9 123 107-272 1-125 (125)
13 cd02170 cytidylyltransferase c 99.9 2.6E-22 5.6E-27 174.3 12.3 131 105-273 2-134 (136)
14 cd02171 G3P_Cytidylyltransfera 99.9 9.2E-22 2E-26 169.4 13.3 123 106-273 3-127 (129)
15 cd02039 cytidylyltransferase_l 99.8 1.5E-19 3.3E-24 154.8 14.5 138 107-270 2-142 (143)
16 PLN02940 riboflavin kinase 99.8 3.8E-20 8.2E-25 187.0 9.5 90 280-376 231-333 (382)
17 cd00560 PanC Pantoate-beta-ala 99.8 4.2E-19 9.1E-24 172.7 7.8 124 105-240 25-173 (277)
18 PTZ00308 ethanolamine-phosphat 99.8 6E-18 1.3E-22 169.7 12.6 130 105-273 12-143 (353)
19 PRK00380 panC pantoate--beta-a 99.7 1.3E-17 2.8E-22 162.6 6.9 126 105-243 25-177 (281)
20 PRK13670 hypothetical protein; 99.6 3.9E-15 8.5E-20 151.2 16.9 107 106-230 3-115 (388)
21 PLN02388 phosphopantetheine ad 99.6 3E-14 6.5E-19 130.6 13.4 140 103-274 18-166 (177)
22 PRK11316 bifunctional heptose 99.4 3.8E-12 8.2E-17 131.0 14.3 131 104-274 340-473 (473)
23 COG0615 TagD Cytidylyltransfer 99.3 2.1E-11 4.4E-16 107.8 13.3 134 107-273 4-138 (140)
24 KOG3110 Riboflavin kinase [Coe 99.3 2.3E-12 5E-17 112.4 6.6 88 282-375 7-106 (153)
25 cd02174 CCT CTP:phosphocholine 99.3 2.7E-11 5.9E-16 108.3 12.3 132 106-276 4-139 (150)
26 cd02173 ECT CTP:phosphoethanol 99.2 2.7E-10 5.9E-15 102.1 14.0 137 105-275 3-140 (152)
27 PF08218 Citrate_ly_lig: Citra 99.2 1E-10 2.2E-15 107.0 9.4 151 112-285 7-175 (182)
28 cd02164 PPAT_CoAS phosphopante 99.2 1.9E-10 4E-15 102.2 10.0 131 107-270 2-142 (143)
29 PRK00071 nadD nicotinic acid m 99.1 8.5E-10 1.8E-14 102.4 14.0 162 105-276 5-181 (203)
30 TIGR00124 cit_ly_ligase [citra 99.1 5.6E-10 1.2E-14 111.6 12.5 160 104-285 139-319 (332)
31 PRK08099 bifunctional DNA-bind 99.1 1.5E-09 3.3E-14 110.9 15.4 164 104-298 52-227 (399)
32 PRK00777 phosphopantetheine ad 99.0 6.3E-09 1.4E-13 93.4 12.1 133 106-273 3-143 (153)
33 PRK00168 coaD phosphopantethei 99.0 2E-08 4.4E-13 90.2 14.5 131 106-276 3-139 (159)
34 TIGR01527 arch_NMN_Atrans nico 98.9 4.3E-08 9.3E-13 89.2 15.7 130 107-276 2-137 (165)
35 cd02165 NMNAT Nicotinamide/nic 98.9 2.5E-08 5.3E-13 91.7 13.4 156 107-275 2-171 (192)
36 PLN02406 ethanolamine-phosphat 98.9 2.8E-08 6.1E-13 102.0 13.5 133 105-273 54-189 (418)
37 cd02163 PPAT Phosphopantethein 98.9 7.3E-08 1.6E-12 86.1 14.4 132 107-276 2-137 (153)
38 PRK13964 coaD phosphopantethei 98.9 8.1E-08 1.8E-12 85.3 14.4 134 106-276 3-140 (140)
39 cd02166 NMNAT_Archaea Nicotina 98.8 1.2E-07 2.6E-12 85.7 14.8 131 107-276 2-139 (163)
40 TIGR01510 coaD_prev_kdtB pante 98.8 9.3E-08 2E-12 85.5 14.0 132 107-276 2-137 (155)
41 cd02167 NMNAT_NadR Nicotinamid 98.8 1.6E-07 3.5E-12 84.6 15.0 133 107-273 2-147 (158)
42 PTZ00308 ethanolamine-phosphat 98.8 4.1E-08 8.8E-13 99.1 12.1 139 105-279 193-334 (353)
43 PRK01170 phosphopantetheine ad 98.8 3.8E-08 8.2E-13 98.1 11.6 141 106-285 2-148 (322)
44 PRK01153 nicotinamide-nucleoti 98.7 5.3E-07 1.1E-11 82.6 15.4 132 107-276 3-140 (174)
45 TIGR00482 nicotinate (nicotina 98.7 2.1E-07 4.6E-12 85.8 12.6 155 110-276 3-173 (193)
46 COG2870 RfaE ADP-heptose synth 98.7 1.7E-07 3.6E-12 95.3 12.5 129 105-275 333-466 (467)
47 TIGR00125 cyt_tran_rel cytidyl 98.6 8.7E-08 1.9E-12 72.7 6.9 58 107-167 2-61 (66)
48 PLN02413 choline-phosphate cyt 98.6 4.1E-07 9E-12 89.0 13.3 145 104-286 27-176 (294)
49 TIGR00018 panC pantoate--beta- 98.6 1.4E-07 3E-12 92.6 9.8 66 105-175 25-92 (282)
50 PRK08887 nicotinic acid mononu 98.6 3.1E-07 6.8E-12 83.9 10.7 141 106-276 4-150 (174)
51 PLN02406 ethanolamine-phosphat 98.6 4.7E-07 1E-11 93.1 12.7 137 104-278 251-393 (418)
52 COG1057 NadD Nicotinic acid mo 98.6 5.7E-07 1.2E-11 84.1 12.0 160 105-276 4-175 (197)
53 PRK07152 nadD putative nicotin 98.6 8.7E-07 1.9E-11 88.7 13.4 161 106-279 3-172 (342)
54 PRK06973 nicotinic acid mononu 98.5 2.3E-06 5E-11 82.4 14.1 123 105-241 23-156 (243)
55 cd02168 NMNAT_Nudix Nicotinami 98.5 1.3E-06 2.9E-11 80.5 11.7 132 107-275 2-145 (181)
56 PLN02945 nicotinamide-nucleoti 98.5 3.6E-06 7.8E-11 80.4 14.7 163 108-276 26-215 (236)
57 PF01467 CTP_transf_2: Cytidyl 98.5 5.5E-07 1.2E-11 77.3 7.8 66 108-178 1-70 (157)
58 PLN02660 pantoate--beta-alanin 98.4 4.5E-07 9.8E-12 89.0 6.6 65 105-175 24-91 (284)
59 cd09286 NMNAT_Eukarya Nicotina 98.3 1.5E-05 3.2E-10 75.8 15.2 162 108-276 4-205 (225)
60 COG3053 CitC Citrate lyase syn 98.3 5.7E-06 1.2E-10 81.3 12.1 156 107-285 148-326 (352)
61 PRK05379 bifunctional nicotina 98.3 8.2E-06 1.8E-10 81.9 13.5 137 104-277 6-152 (340)
62 PRK13671 hypothetical protein; 98.3 1.1E-05 2.3E-10 80.0 13.0 103 109-230 5-114 (298)
63 COG1019 Predicted nucleotidylt 98.3 5.4E-06 1.2E-10 74.4 9.2 129 106-270 7-144 (158)
64 TIGR01526 nadR_NMN_Atrans nico 98.2 4.1E-05 9E-10 76.4 15.6 69 106-179 3-74 (325)
65 TIGR00339 sopT ATP sulphurylas 98.2 6E-05 1.3E-09 77.1 16.0 161 105-277 184-367 (383)
66 cd02156 nt_trans nucleotidyl t 98.2 3.3E-06 7.1E-11 70.3 5.7 56 107-166 2-58 (105)
67 COG0669 CoaD Phosphopantethein 98.0 5.9E-05 1.3E-09 68.1 10.5 133 106-278 4-143 (159)
68 KOG2803 Choline phosphate cyti 97.5 0.00028 6.1E-09 70.0 8.2 110 105-229 9-119 (358)
69 PRK13793 nicotinamide-nucleoti 97.2 0.0095 2.1E-07 56.0 13.9 72 105-179 5-78 (196)
70 PRK04149 sat sulfate adenylylt 97.1 0.024 5.3E-07 58.4 16.4 161 105-277 187-363 (391)
71 PF01747 ATP-sulfurylase: ATP- 97.0 0.022 4.8E-07 54.2 14.3 160 105-277 21-197 (215)
72 KOG2803 Choline phosphate cyti 97.0 0.0053 1.2E-07 61.2 10.4 104 96-215 188-299 (358)
73 KOG2804 Phosphorylcholine tran 96.9 0.0054 1.2E-07 60.8 9.1 145 106-289 65-213 (348)
74 cd00517 ATPS ATP-sulfurylase. 96.8 0.064 1.4E-06 54.6 17.1 160 105-277 157-336 (353)
75 PF05636 HIGH_NTase1: HIGH Nuc 96.8 0.0027 5.9E-08 65.2 7.0 104 108-229 5-114 (388)
76 COG2046 MET3 ATP sulfurylase ( 96.8 0.041 8.9E-07 56.1 15.2 163 105-277 184-359 (397)
77 COG1323 Predicted nucleotidylt 96.7 0.0073 1.6E-07 61.4 9.3 106 109-230 6-115 (358)
78 PRK05537 bifunctional sulfate 95.6 0.51 1.1E-05 50.9 16.7 161 105-277 187-367 (568)
79 COG1056 NadR Nicotinamide mono 95.5 0.22 4.7E-06 46.0 11.5 131 105-277 4-143 (172)
80 PF02569 Pantoate_ligase: Pant 93.4 0.17 3.6E-06 50.1 6.1 126 105-243 25-178 (280)
81 COG0414 PanC Panthothenate syn 91.2 0.47 1E-05 46.9 6.1 57 115-174 32-91 (285)
82 PRK13477 bifunctional pantoate 90.7 0.51 1.1E-05 50.4 6.3 62 112-175 27-90 (512)
83 KOG3351 Predicted nucleotidylt 88.1 2 4.4E-05 42.0 7.6 130 106-273 144-285 (293)
84 KOG3042 Panthothenate syntheta 86.6 1.9 4.1E-05 41.5 6.4 126 107-239 29-176 (283)
85 PRK00109 Holliday junction res 75.2 16 0.00034 32.3 7.8 63 192-276 44-112 (138)
86 TIGR00250 RNAse_H_YqgF RNAse H 71.9 22 0.00047 31.1 7.8 63 192-276 38-106 (130)
87 cd00950 DHDPS Dihydrodipicolin 62.8 64 0.0014 31.2 9.9 130 121-277 24-156 (284)
88 PRK03170 dihydrodipicolinate s 58.5 1.1E+02 0.0024 29.7 10.8 129 119-274 23-154 (292)
89 COG0816 Predicted endonuclease 57.2 54 0.0012 29.4 7.5 64 194-277 45-112 (141)
90 COG2355 Zn-dependent dipeptida 53.0 85 0.0018 31.8 9.0 73 157-230 205-283 (313)
91 cd02803 OYE_like_FMN_family Ol 52.9 1.9E+02 0.0042 28.3 11.5 72 188-279 225-307 (327)
92 TIGR02313 HpaI-NOT-DapA 2,4-di 52.1 2.1E+02 0.0047 28.1 11.6 140 118-284 21-175 (294)
93 cd00954 NAL N-Acetylneuraminic 50.6 2.3E+02 0.0049 27.7 11.5 129 119-273 22-154 (288)
94 KOG3199 Nicotinamide mononucle 50.1 46 0.001 32.1 6.2 25 106-130 10-34 (234)
95 PRK08185 hypothetical protein; 49.6 70 0.0015 31.8 7.7 68 188-275 149-221 (283)
96 cd00408 DHDPS-like Dihydrodipi 47.2 2.1E+02 0.0046 27.4 10.6 126 121-273 21-149 (281)
97 PF01976 DUF116: Protein of un 45.6 31 0.00066 31.4 4.2 36 220-278 73-108 (158)
98 TIGR00674 dapA dihydrodipicoli 44.9 2E+02 0.0043 28.0 10.1 129 121-276 22-153 (285)
99 PRK13523 NADPH dehydrogenase N 44.1 2.7E+02 0.0059 28.1 11.1 72 188-280 224-302 (337)
100 COG0066 LeuD 3-isopropylmalate 44.1 14 0.00031 34.7 1.8 48 191-242 51-98 (191)
101 cd04734 OYE_like_3_FMN Old yel 40.2 4E+02 0.0088 26.8 12.6 18 263-280 295-312 (343)
102 PRK09722 allulose-6-phosphate 39.3 3.6E+02 0.0078 26.0 11.2 53 122-196 99-151 (229)
103 TIGR00683 nanA N-acetylneurami 38.6 3.2E+02 0.007 26.7 10.5 127 121-273 24-154 (290)
104 cd00248 Mth938-like Mth938-lik 37.0 1.1E+02 0.0024 25.7 6.1 49 187-240 38-86 (109)
105 TIGR01859 fruc_bis_ald_ fructo 37.0 1.5E+02 0.0033 29.3 7.9 68 188-275 153-223 (282)
106 cd02932 OYE_YqiM_FMN Old yello 36.0 3.8E+02 0.0081 26.7 10.7 88 171-279 221-316 (336)
107 PF01244 Peptidase_M19: Membra 35.2 1.7E+02 0.0036 29.4 8.0 93 113-213 176-274 (320)
108 PRK04147 N-acetylneuraminate l 35.0 4E+02 0.0087 26.0 10.5 109 118-238 24-135 (293)
109 cd00886 MogA_MoaB MogA_MoaB fa 34.5 80 0.0017 27.9 5.0 42 202-243 2-43 (152)
110 cd04733 OYE_like_2_FMN Old yel 34.2 4.9E+02 0.011 26.0 11.5 15 112-126 162-178 (338)
111 cd00952 CHBPH_aldolase Trans-o 33.9 4.1E+02 0.0089 26.3 10.5 105 121-238 32-140 (309)
112 PF03652 UPF0081: Uncharacteri 29.9 44 0.00095 29.4 2.5 48 192-240 41-94 (135)
113 PF14781 BBS2_N: Ciliary BBSom 29.4 24 0.00052 31.6 0.8 11 108-118 1-11 (136)
114 cd05125 Mth938_2P1-like Mth938 27.0 2.1E+02 0.0045 24.6 6.1 50 187-240 39-88 (114)
115 PRK02269 ribose-phosphate pyro 26.8 6.6E+02 0.014 25.2 10.8 79 154-241 109-196 (320)
116 PF00834 Ribul_P_3_epim: Ribul 26.1 1.9E+02 0.0041 27.1 6.2 90 122-275 96-187 (201)
117 smart00668 CTLH C-terminal to 25.9 38 0.00083 24.3 1.2 25 264-288 4-28 (58)
118 PRK04694 Maf-like protein; Rev 25.2 1.3E+02 0.0029 28.0 5.0 37 157-197 9-46 (190)
119 PRK00648 Maf-like protein; Rev 25.2 1.5E+02 0.0033 27.6 5.4 38 157-197 12-50 (191)
120 PF12854 PPR_1: PPR repeat 24.9 56 0.0012 21.6 1.8 23 263-285 9-31 (34)
121 COG0462 PrsA Phosphoribosylpyr 24.5 7.6E+02 0.017 25.1 10.6 163 58-242 13-195 (314)
122 COG0076 GadB Glutamate decarbo 23.9 2.8E+02 0.0061 29.4 7.7 66 166-238 177-242 (460)
123 PRK00553 ribose-phosphate pyro 23.8 7.7E+02 0.017 25.0 11.4 148 80-241 35-199 (332)
124 PF06989 BAALC_N: BAALC N-term 23.6 35 0.00075 25.4 0.6 9 1-9 1-9 (53)
125 PF00701 DHDPS: Dihydrodipicol 23.3 3.2E+02 0.007 26.4 7.5 129 121-277 25-157 (289)
126 smart00115 CASc Caspase, inter 22.9 2.2E+02 0.0047 27.2 6.1 44 210-274 17-63 (241)
127 PRK03620 5-dehydro-4-deoxygluc 22.6 7.4E+02 0.016 24.3 11.3 109 118-239 28-138 (303)
128 PRK00748 1-(5-phosphoribosyl)- 22.5 4.9E+02 0.011 24.0 8.3 72 187-279 145-216 (233)
129 PF13167 GTP-bdg_N: GTP-bindin 22.4 1.1E+02 0.0024 25.6 3.5 35 219-273 43-77 (95)
130 PF09707 Cas_Cas2CT1978: CRISP 22.3 29 0.00063 28.6 -0.0 55 39-95 16-71 (86)
131 cd01674 Homoaconitase_Swivel H 22.1 1.1E+02 0.0025 27.1 3.6 35 203-241 46-80 (129)
132 PLN02446 (5-phosphoribosyl)-5- 21.6 3.6E+02 0.0078 26.6 7.4 82 158-246 95-189 (262)
133 PF00994 MoCF_biosynth: Probab 21.5 57 0.0012 28.2 1.7 39 206-244 3-41 (144)
134 PRK02458 ribose-phosphate pyro 21.2 8.5E+02 0.018 24.5 10.9 124 106-241 58-200 (323)
135 cd01579 AcnA_Bact_Swivel Bacte 20.9 91 0.002 27.2 2.8 49 188-242 36-84 (121)
136 PRK03092 ribose-phosphate pyro 20.8 8.4E+02 0.018 24.3 11.3 79 154-241 93-180 (304)
137 PRK02083 imidazole glycerol ph 20.8 7.2E+02 0.016 23.5 10.4 97 155-278 154-250 (253)
138 cd05560 Xcc1710_like Xcc1710_l 20.6 2.9E+02 0.0063 23.3 5.7 48 187-240 39-86 (109)
139 COG2099 CobK Precorrin-6x redu 20.4 2.5E+02 0.0054 27.8 5.9 62 165-242 168-231 (257)
140 PRK01526 Maf-like protein; Rev 20.3 1.7E+02 0.0036 27.7 4.6 37 157-197 17-55 (205)
141 PRK13125 trpA tryptophan synth 20.3 7.3E+02 0.016 23.5 9.2 15 122-136 120-134 (244)
No 1
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=100.00 E-value=2e-67 Score=512.64 Aligned_cols=243 Identities=28% Similarity=0.404 Sum_probs=218.6
Q ss_pred EEEEeecCccCHHHHHHHHHHHHh----CCC-EEEeecC-cccccccCCCCCCCChHHHHHHHHhcCCccCeEEEEeccc
Q 016934 107 IVALGKFDALHIGHRELAIQASKI----GAP-YLLSFIG-MAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQI 180 (380)
Q Consensus 107 vvtIG~FDGvHlGHq~LI~~A~~~----g~~-~VvtF~~-P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD~vv~~~F~~ 180 (380)
++|||+|||+|+|||+||++|++. +.+ +|+||+| |..++.+...+.+++.++|+++|+++| +|++++++|+.
T Consensus 1 ~vaiG~FDGvH~GHq~Li~~~~~~a~~~~~~~~V~tF~phP~~~~~~~~~~~l~~~~~k~~~l~~~G--vd~~~~~~F~~ 78 (288)
T TIGR00083 1 SLAIGYFDGLHLGHQALLQELKQIAEEKGLPPAVLLFEPHPSEQFNWLTAPALTPLEDKARQLQIKG--VEQLLVVVFDE 78 (288)
T ss_pred CEEEEeCCccCHHHHHHHHHHHHHHHHhCCCEEEEEeCCChHHHhCccCCCCCCCHHHHHHHHHHcC--CCEEEEeCCCH
Confidence 489999999999999999987653 544 7899999 999886644334889999999999999 99999999999
Q ss_pred cccccCCCCHHHHHHHHH-HhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcceeccCCCCCcccCCCCcc
Q 016934 181 QFSSVRHLSPQQFVEKLS-RELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKE 259 (380)
Q Consensus 181 ~Fa~i~~ls~e~Fie~L~-~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~~~~~~~~~ 259 (380)
+|+ ++||++|++.++ +.|+++.||||+|||||++|+||+++|+++++++|++|++++++..+
T Consensus 79 ~~a---~ls~e~Fi~~~l~~~l~~~~ivvG~Df~FG~~~~G~~~~L~~~~~~~g~~v~~~~~~~~~-------------- 141 (288)
T TIGR00083 79 EFA---NLSALQFIDQLIVKHLHVKFLVVGDDFRFGHDRQGDFLLLQLFGNTTIFCVIVKQLFCQD-------------- 141 (288)
T ss_pred HHH---cCCHHHHHHHHHHhccCCcEEEECCCccCCCCCCCCHHHHHHhccccCcEEEEeccccCC--------------
Confidence 998 699999999855 57999999999999999999999999999999999999999886432
Q ss_pred CCccchHHHHHHHHcCCchhhhhhcceeeeEEEEEeecccccccCCCcccCCCCCCCC----CCCCCCcEEEEEEEEcCc
Q 016934 260 RGQVSSTRVRQALAMGDMKYVSELLGRQHRLILTVNDHDELISTSNKHRVSVPKSCLL----NLPPKEGFYGNSVLLFGE 335 (380)
Q Consensus 260 ~~~ISST~IR~~L~~GdI~~An~LLGrpy~i~G~Vv~G~~~~~~~~Gr~lGfPTANl~----~llP~~GVYav~v~~~g~ 335 (380)
++||||+||++|++|||+.||+||||||+++|+|+||+++ ||+||||||||. .++|+.|||++++.+++.
T Consensus 142 -~~ISST~IR~~l~~G~i~~A~~lLGr~y~i~G~Vv~G~~~-----Gr~lGfPTaNl~~~~~~~~p~~GVYa~~v~i~~~ 215 (288)
T TIGR00083 142 -IRISSSAIRQALKNGDLELANKLLGRPYFICGTVIHGQKL-----GRTLGFPTANIKLKNQVLPLKGGYYVVVVLLNGE 215 (288)
T ss_pred -CeECHHHHHHHHHcCCHHHHHHhhhhhhccceEEEecCCC-----cccccCceEEecCcccccCCCcceEEEEEEeCCe
Confidence 6899999999999999999999999999999999999987 999999999995 478999999999999887
Q ss_pred cc----ceeeceEEeCCceEEEEeeccCCCCCCCCCCceEEEEEcc
Q 016934 336 EN----PVKCRICIDASHIHLEMDKVGFCNFDHSQDFKLLGIEFGD 377 (380)
Q Consensus 336 ~~----~iG~rpt~~~~~~~vE~h~l~~~df~~~~yg~~l~vef~~ 377 (380)
++ |||.||||++++..+|||+ +||++|+||+.|.|+|.+
T Consensus 216 ~y~~v~niG~~PT~~~~~~~~E~~i---ldf~~dlYg~~i~v~f~~ 258 (288)
T TIGR00083 216 PYPGVGNIGNRPTFIGQQLVIEVHL---LDFSGELYGQEIKVTLVK 258 (288)
T ss_pred EEEEEEEeCCCCccCCCceEEEEEe---CCCCcccCCCEEEEEeHH
Confidence 65 6899999988777899965 469999999999999953
No 2
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=100.00 E-value=1e-63 Score=488.41 Aligned_cols=246 Identities=28% Similarity=0.471 Sum_probs=224.5
Q ss_pred CceEEEEeecCccCHHHHHHHHHHHHh----CCC-EEEeecC-cccccccCC-CCCCCChHHHHHHHHhcCCccCeEEEE
Q 016934 104 AGGIVALGKFDALHIGHRELAIQASKI----GAP-YLLSFIG-MAEVFGWEP-RAPIVAKCDRKRVLSSWAPYCGNVAPV 176 (380)
Q Consensus 104 ~~~vvtIG~FDGvHlGHq~LI~~A~~~----g~~-~VvtF~~-P~~vl~~~~-~~~l~s~~~R~~lL~~lg~~vD~vv~~ 176 (380)
.++++|||+|||||+|||+||++|++. +.+ +|+||+| |.+++.+.. ...+++.++|+++|+.+| +|.++++
T Consensus 15 ~~~~l~IG~FDGvHlGHq~ll~~a~~~a~~~~~~~~VitF~p~P~~~~~~~~~~~~Lt~~~~k~~~l~~~g--vd~~~v~ 92 (304)
T COG0196 15 RGCVLTIGNFDGVHLGHQKLLAQALEAAEKRGLPVVVITFEPHPRELLKPDKPPTRLTPLREKIRLLAGYG--VDALVVL 92 (304)
T ss_pred CCcEEEEEcCCccchhHHHHHHHHHHHHHHhCCceEEEEecCCCHHHcCCCCCccccCCHHHHHHHHHhcC--CcEEEEE
Confidence 679999999999999999999998744 566 6799998 999987643 344888999999999999 9999999
Q ss_pred eccccccccCCCCHHHHHHHHHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcceeccCCCCCcccCCC
Q 016934 177 EFQIQFSSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCND 256 (380)
Q Consensus 177 ~F~~~Fa~i~~ls~e~Fie~L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~~~~~~ 256 (380)
+|+.+|+ ++||++|++.|++.|+++.||||+||+||++++||+++|++++++ ||+|++++++..++
T Consensus 93 ~F~~~fa---~ls~~~Fv~~lv~~l~~k~ivvG~DF~FGk~~~g~~~~L~~~~~~-gf~v~~v~~~~~~~---------- 158 (304)
T COG0196 93 DFDLEFA---NLSAEEFVELLVEKLNVKHIVVGFDFRFGKGRQGNAELLRELGQK-GFEVTIVPKINEEG---------- 158 (304)
T ss_pred eCCHhHh---hCCHHHHHHHHHhccCCcEEEEecccccCCCCCCCHHHHHHhccC-CceEEEeccEecCC----------
Confidence 9999999 699999999889999999999999999999999999999999999 99999999988654
Q ss_pred CccCCccchHHHHHHHHcCCchhhhhhcceeeeEEEEEeecccccccCCCcccCCCCCCCC---CCCCCCcEEEEEEEEc
Q 016934 257 SKERGQVSSTRVRQALAMGDMKYVSELLGRQHRLILTVNDHDELISTSNKHRVSVPKSCLL---NLPPKEGFYGNSVLLF 333 (380)
Q Consensus 257 ~~~~~~ISST~IR~~L~~GdI~~An~LLGrpy~i~G~Vv~G~~~~~~~~Gr~lGfPTANl~---~llP~~GVYav~v~~~ 333 (380)
.+||||+||++|.+||++.||+||||||+++|+|+||+++ ||++|||||||. +++|+.|||++++.+.
T Consensus 159 ----~~iSSt~IR~~L~~gdl~~A~~lLG~py~i~G~Vv~G~~~-----Gr~lGfPTaNi~~~~~~~~~~GVYav~v~~~ 229 (304)
T COG0196 159 ----IRISSTAIRQALREGDLEEANKLLGRPYSIEGKVVHGQKL-----GRTLGFPTANIYLKDNVLPAFGVYAVRVKLD 229 (304)
T ss_pred ----cEEchHHHHHHHhcCCHHHHHHhcCCCeEEEEEEEccccc-----ccccCCCccccccccccccCCeeEEEEEEEC
Confidence 7999999999999999999999999999999999999988 999999999996 5677999999999998
Q ss_pred Ccc----cceeeceEEeCCceEEEEeeccCCCCCCCCCCceEEEEEcc
Q 016934 334 GEE----NPVKCRICIDASHIHLEMDKVGFCNFDHSQDFKLLGIEFGD 377 (380)
Q Consensus 334 g~~----~~iG~rpt~~~~~~~vE~h~l~~~df~~~~yg~~l~vef~~ 377 (380)
+.. .++|+|||++.+...+|+|++ ||++|+||+.|.|+|.+
T Consensus 230 ~~~~~gv~~vG~rpt~~~~~~~lEvhi~---Df~~dlYG~~i~v~~~~ 274 (304)
T COG0196 230 GGVYPGVANVGYRPTVDGSERSLEVHIL---DFNGDLYGERVKVRFLK 274 (304)
T ss_pred CccccceEEecccccccCCeeEEEEEEe---cccccccCceEEEEEhh
Confidence 753 379999999988999999655 49999999999999953
No 3
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=100.00 E-value=1.7e-63 Score=488.64 Aligned_cols=245 Identities=29% Similarity=0.477 Sum_probs=222.0
Q ss_pred eEEEEeecCccCHHHHHHHHHHHHhC----CC-EEEeecC-cccccccC-CCCCCCChHHHHHHHHhcCCccCeEEEEec
Q 016934 106 GIVALGKFDALHIGHRELAIQASKIG----AP-YLLSFIG-MAEVFGWE-PRAPIVAKCDRKRVLSSWAPYCGNVAPVEF 178 (380)
Q Consensus 106 ~vvtIG~FDGvHlGHq~LI~~A~~~g----~~-~VvtF~~-P~~vl~~~-~~~~l~s~~~R~~lL~~lg~~vD~vv~~~F 178 (380)
+++|+|+|||+|+|||+||++|++.+ .+ +|+||+| |+.++.+. +..++++.++|+++|+++| ||.+++++|
T Consensus 15 ~vv~iG~FDGvH~GHq~Ll~~a~~~a~~~~~~~~vitFd~~p~~~~~~~~~~~~l~t~eeR~~~l~~~g--VD~~~~~~F 92 (305)
T PRK05627 15 CVLTIGNFDGVHRGHQALLARAREIARERGLPSVVMTFEPHPREVFAPDKAPARLTPLRDKAELLAELG--VDYVLVLPF 92 (305)
T ss_pred EEEEEeeCCcCCHHHHHHHHHHHHHHHhcCCCEEEEEecCCHHHHcCCCCCCcCCCCHHHHHHHHHHcC--CCEEEEecC
Confidence 78999999999999999999998763 44 5799998 88887543 3456889999999999998 999999999
Q ss_pred cccccccCCCCHHHHHHH-HHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcceeccCCCCCcccCCCC
Q 016934 179 QIQFSSVRHLSPQQFVEK-LSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDS 257 (380)
Q Consensus 179 ~~~Fa~i~~ls~e~Fie~-L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~~~~~~~ 257 (380)
+.+|+ ++||++|++. |++.++++.||||+|||||++++||+++|+++++++|++|.+++++..++
T Consensus 93 ~~~~~---~ls~e~Fi~~~l~~~l~~~~iVvG~Df~FG~~~~G~~~~L~~~~~~~g~~v~~v~~~~~~~----------- 158 (305)
T PRK05627 93 DEEFA---KLSAEEFIEDLLVKGLNAKHVVVGFDFRFGKKRAGDFELLKEAGKEFGFEVTIVPEVKEDG----------- 158 (305)
T ss_pred CHHHh---cCCHHHHHHHHHHhccCCCEEEECCCCCCCCCCCCCHHHHHHHHHHcCcEEEEeccEecCC-----------
Confidence 99888 6999999998 66789999999999999999999999999999999999999999987654
Q ss_pred ccCCccchHHHHHHHHcCCchhhhhhcceeeeEEEEEeecccccccCCCcccCCCCCCCC---CCCCCCcEEEEEEEEcC
Q 016934 258 KERGQVSSTRVRQALAMGDMKYVSELLGRQHRLILTVNDHDELISTSNKHRVSVPKSCLL---NLPPKEGFYGNSVLLFG 334 (380)
Q Consensus 258 ~~~~~ISST~IR~~L~~GdI~~An~LLGrpy~i~G~Vv~G~~~~~~~~Gr~lGfPTANl~---~llP~~GVYav~v~~~g 334 (380)
.+||||+||++|++|||+.||+||||||+++|+|+||+++ ||+||||||||. ..+|+.|||++++.+++
T Consensus 159 ---~~ISST~IR~~I~~G~i~~A~~lLg~~y~~~g~V~~G~~~-----Gr~lgfPTaNl~~~~~~~p~~GVY~~~~~i~~ 230 (305)
T PRK05627 159 ---ERVSSTAIRQALAEGDLELANKLLGRPYSISGRVVHGQKL-----GRTLGFPTANLPLPDRVLPADGVYAVRVKVDG 230 (305)
T ss_pred ---CcCchHHHHHHHHcCCHHHHHhhhcCCCceEEEEEECccc-----CccccceeEeecCccCCCCCceEEEEEEEECC
Confidence 7899999999999999999999999999999999999987 999999999995 45599999999999998
Q ss_pred ccc----ceeeceEEeCCceEEEEeeccCCCCCCCCCCceEEEEEcc
Q 016934 335 EEN----PVKCRICIDASHIHLEMDKVGFCNFDHSQDFKLLGIEFGD 377 (380)
Q Consensus 335 ~~~----~iG~rpt~~~~~~~vE~h~l~~~df~~~~yg~~l~vef~~ 377 (380)
.+| +||.||||+++...+|+|++ ||++|+||+.|.|+|-+
T Consensus 231 ~~y~~~~~iG~~ptf~~~~~~~E~~i~---df~~d~Yg~~i~v~~~~ 274 (305)
T PRK05627 231 KPYPGVANIGTRPTVDGGRQLLEVHLL---DFNGDLYGEHITVEFLK 274 (305)
T ss_pred EEEEEEEEecCCCccCCCceEEEEEec---CCCCccCCCEEEEEEhh
Confidence 876 48999999877778999654 69999999999999954
No 4
>PRK07143 hypothetical protein; Provisional
Probab=100.00 E-value=8.4e-57 Score=436.21 Aligned_cols=228 Identities=20% Similarity=0.310 Sum_probs=198.2
Q ss_pred CCCceEEEEeecCccCHHHHHHHHHHHHhCCC-EEEeecCcccccccCCCCCCCChHHHHHHHHhcCCccCeEEEEeccc
Q 016934 102 PVAGGIVALGKFDALHIGHRELAIQASKIGAP-YLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQI 180 (380)
Q Consensus 102 ~~~~~vvtIG~FDGvHlGHq~LI~~A~~~g~~-~VvtF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD~vv~~~F~~ 180 (380)
..+++++|||+|||||+|||+||++|++.+.+ +|+||++|..++. .+..++++.++|+++|+++| +|++++++|+.
T Consensus 13 ~~~~~vvaiG~FDGvH~GHq~Ll~~a~~~~~~~vV~tF~~P~~~~~-~~~~~l~~~~er~~~l~~~G--vd~~~~~~F~~ 89 (279)
T PRK07143 13 KFEKPTFVLGGFESFHLGHLELFKKAKESNDEIVIVIFKNPENLPK-NTNKKFSDLNSRLQTLANLG--FKNIILLDFNE 89 (279)
T ss_pred CCCCeEEEEccCCcCCHHHHHHHHHHHHCCCcEEEEEeCChHHhcc-cCcccCCCHHHHHHHHHHCC--CCEEEEeCCCH
Confidence 33678999999999999999999999998877 6789988877764 33345889999999999999 89999999999
Q ss_pred cccccCCCCHHHHHHHHHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcceeccCCCCCcccCCCCccC
Q 016934 181 QFSSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKER 260 (380)
Q Consensus 181 ~Fa~i~~ls~e~Fie~L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~~~~~~~~~~ 260 (380)
+|+ ++||++|++.++. ++++.||||+||+||++|+||+++|+++++ ++++|+++..++
T Consensus 90 ~~a---~ls~e~Fi~~ll~-l~~~~iVvG~Df~FG~~r~G~~~~L~~~~~----~v~~v~~~~~~g-------------- 147 (279)
T PRK07143 90 ELQ---NLSGNDFIEKLTK-NQVSFFVVGKDFRFGKNASWNADDLKEYFP----NVHIVEILKINQ-------------- 147 (279)
T ss_pred HHh---CCCHHHHHHHHHh-cCCCEEEECCCcccCCCCCCCHHHHHHhCC----cEEEeCCEEcCC--------------
Confidence 998 6999999998765 999999999999999999999999999874 789999987654
Q ss_pred CccchHHHHHHHHcCCchhhhhhcceeeeEEEEEeecccccccCCCcccCCCCCCCCCCCCCCcEEEEEEEEcCccc---
Q 016934 261 GQVSSTRVRQALAMGDMKYVSELLGRQHRLILTVNDHDELISTSNKHRVSVPKSCLLNLPPKEGFYGNSVLLFGEEN--- 337 (380)
Q Consensus 261 ~~ISST~IR~~L~~GdI~~An~LLGrpy~i~G~Vv~G~~~~~~~~Gr~lGfPTANl~~llP~~GVYav~v~~~g~~~--- 337 (380)
.+||||+||++|++|||++||+||||||+++|+|+||..+ .+|. ..++|+.|||++++.+++.++
T Consensus 148 ~~ISST~IR~~l~~G~i~~A~~lLGr~y~i~G~V~~GaNl---------~~~~---~~~~P~~GVYa~~v~~~~~~y~~v 215 (279)
T PRK07143 148 QKISTSLLKEFIEFGDIELLNSLLLYNYSISITINKNFEF---------TYPQ---NIIKLHAGIYLAYVVINNFKYHGI 215 (279)
T ss_pred cEEcHHHHHHHHHcCCHHHHHHHcCCCcEEEEEEECCeEe---------CCCc---CcCCCCCcEEEEEEEECCEEEEEE
Confidence 7999999999999999999999999999999999987322 2221 147899999999999988765
Q ss_pred -ceeeceEEeCCceEEEEeeccCCCCCC--CCCCceEEEEEcc
Q 016934 338 -PVKCRICIDASHIHLEMDKVGFCNFDH--SQDFKLLGIEFGD 377 (380)
Q Consensus 338 -~iG~rpt~~~~~~~vE~h~l~~~df~~--~~yg~~l~vef~~ 377 (380)
|||.||| +|||++| |++ |+|| .|.|+|.+
T Consensus 216 ~niG~~PT-------iE~hild---f~~~~dlYg-~i~v~f~~ 247 (279)
T PRK07143 216 LKINFNNK-------NKIKFFD---FDLIINKYQ-EIFIEIVK 247 (279)
T ss_pred EEecCCce-------EEEEEec---CCCCcCCCC-EEEEEEhh
Confidence 6899999 8996655 888 8999 99999954
No 5
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=100.00 E-value=1.3e-44 Score=329.59 Aligned_cols=173 Identities=34% Similarity=0.507 Sum_probs=156.6
Q ss_pred eEEEEeecCccCHHHHHHHHHHHHhC----C-CEEEeecC-cccccccC-CCCCCCChHHHHHHHHhcCCccCeEEEEec
Q 016934 106 GIVALGKFDALHIGHRELAIQASKIG----A-PYLLSFIG-MAEVFGWE-PRAPIVAKCDRKRVLSSWAPYCGNVAPVEF 178 (380)
Q Consensus 106 ~vvtIG~FDGvHlGHq~LI~~A~~~g----~-~~VvtF~~-P~~vl~~~-~~~~l~s~~~R~~lL~~lg~~vD~vv~~~F 178 (380)
+++|+|+|||+|+|||+||++|++.+ . .+++||++ |..++.++ +..++++.++|.++|++++ +|.+++++|
T Consensus 1 ~vv~iG~FDgvH~GH~~ll~~a~~~a~~~~~~~vvv~f~~~p~~~~~~~~~~~~l~~~e~R~~~l~~l~--vd~v~~~~f 78 (180)
T cd02064 1 TVVAIGNFDGVHLGHQALIKTLKKIARERGLPSAVLTFDPHPREVFLPDKAPPRLTTLEEKLELLESLG--VDYLLVLPF 78 (180)
T ss_pred CEEEEecCCccCHHHHHHHHHHHHHHHHcCCCeEEEEECCCHHHHhCCCCCCCcCCCHHHHHHHHHHcC--CCEEEEeCC
Confidence 47999999999999999999998763 3 36799998 87776433 3456889999999999998 999999999
Q ss_pred cccccccCCCCHHHHHHHHHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcceeccCCCCCcccCCCCc
Q 016934 179 QIQFSSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSK 258 (380)
Q Consensus 179 ~~~Fa~i~~ls~e~Fie~L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~~~~~~~~ 258 (380)
+.+|+ +++|++|++.++.+++++.+|+|+||+||++++||+++|+++++++|+++.+++++..++
T Consensus 79 ~~~~~---~~s~~~Fi~~il~~~~~~~ivvG~Df~FG~~~~g~~~~L~~~~~~~g~~v~~v~~~~~~~------------ 143 (180)
T cd02064 79 DKEFA---SLSAEEFVEDLLVKLNAKHVVVGFDFRFGKGRSGDAELLKELGKKYGFEVTVVPPVTLDG------------ 143 (180)
T ss_pred CHHHH---cCCHHHHHHHHHhhcCCeEEEEccCCCCCCCCCCCHHHHHHhhhhcCcEEEEeCcEecCC------------
Confidence 99888 699999999877666999999999999999999999999999999999999999987653
Q ss_pred cCCccchHHHHHHHHcCCchhhhhhcceeeeEEEEEeec
Q 016934 259 ERGQVSSTRVRQALAMGDMKYVSELLGRQHRLILTVNDH 297 (380)
Q Consensus 259 ~~~~ISST~IR~~L~~GdI~~An~LLGrpy~i~G~Vv~G 297 (380)
..||||+||++|++|||+.||+||||||+++|+|+||
T Consensus 144 --~~iSST~IR~~i~~G~i~~an~lLg~~y~~~g~V~~G 180 (180)
T cd02064 144 --ERVSSTRIREALAEGDVELANELLGRPYSIEGRVVHG 180 (180)
T ss_pred --cEEcHHHHHHHHHhCCHHHHHHHcCCCcEEEEEEeeC
Confidence 7899999999999999999999999999999999997
No 6
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=100.00 E-value=2e-38 Score=284.28 Aligned_cols=146 Identities=33% Similarity=0.575 Sum_probs=116.9
Q ss_pred CCceEEEEeecCccCHHHHHHHHHHHHh----CCC-EEEeecC-ccccccc-CCCCCCCChHHHHHHHHhcCCccCeEEE
Q 016934 103 VAGGIVALGKFDALHIGHRELAIQASKI----GAP-YLLSFIG-MAEVFGW-EPRAPIVAKCDRKRVLSSWAPYCGNVAP 175 (380)
Q Consensus 103 ~~~~vvtIG~FDGvHlGHq~LI~~A~~~----g~~-~VvtF~~-P~~vl~~-~~~~~l~s~~~R~~lL~~lg~~vD~vv~ 175 (380)
.+++++|||+|||||+|||+||++|.+. +.+ +|+||+| |..++.+ .+...|++.++|+++|+.+| +|++++
T Consensus 4 ~~~~~v~iG~FDGvH~GHq~Li~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~~~G--vd~~~~ 81 (157)
T PF06574_consen 4 NKKSVVAIGNFDGVHLGHQKLIKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELLESLG--VDYVIV 81 (157)
T ss_dssp -S-EEEEES--TT--HHHHHHHHHHHHHHHHCT-EEEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHHHHTT--ESEEEE
T ss_pred CCCcEEEEeCCCCccHHHHHHHHHHhhhhhhcccceEEEEcccCHHHHhcCCCcccCCCCHHHHHHHHHHcC--CCEEEE
Confidence 4679999999999999999999997654 444 6799998 9999874 33445889999999999999 999999
Q ss_pred EeccccccccCCCCHHHHHHHHHH-hhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcceeccCCCCCcccC
Q 016934 176 VEFQIQFSSVRHLSPQQFVEKLSR-ELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDC 254 (380)
Q Consensus 176 ~~F~~~Fa~i~~ls~e~Fie~L~~-~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~~~~ 254 (380)
++|+.+|+ +|+|++|++.++. +++++.||||+|||||++|+||+++|+++++++|++|++|+++..++
T Consensus 82 ~~F~~~~~---~ls~~~Fi~~iL~~~l~~~~ivvG~DfrFG~~~~G~~~~L~~~~~~~g~~v~~v~~~~~~~-------- 150 (157)
T PF06574_consen 82 IPFTEEFA---NLSPEDFIEKILKEKLNVKHIVVGEDFRFGKNRSGDVELLKELGKEYGFEVEVVPPVKIDG-------- 150 (157)
T ss_dssp E-CCCHHC---CS-HHHHHHHHCCCHCTEEEEEEETT-EESGGGEEEHHHHHHCTTTT-SEEEEE---EETT--------
T ss_pred ecchHHHH---cCCHHHHHHHHHHhcCCccEEEEccCccCCCCCCCCHHHHHHhcccCceEEEEECCEEcCC--------
Confidence 99999998 6999999998555 99999999999999999999999999999999999999999998764
Q ss_pred CCCccCCccchHH
Q 016934 255 NDSKERGQVSSTR 267 (380)
Q Consensus 255 ~~~~~~~~ISST~ 267 (380)
.+|||||
T Consensus 151 ------~~ISStr 157 (157)
T PF06574_consen 151 ------EKISSTR 157 (157)
T ss_dssp ------EE-SHHH
T ss_pred ------cEeCCCC
Confidence 8999997
No 7
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=99.93 E-value=1.9e-25 Score=219.03 Aligned_cols=160 Identities=16% Similarity=0.122 Sum_probs=124.5
Q ss_pred CceEEEEeecCccCHHHHHHHHHHHHhCCCEEEeecCcccccccCCCCCCCChHHHHHHHHhcCCccCeEEEEecc----
Q 016934 104 AGGIVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQ---- 179 (380)
Q Consensus 104 ~~~vvtIG~FDGvHlGHq~LI~~A~~~g~~~VvtF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD~vv~~~F~---- 179 (380)
+..+..+|.||.+|.||..++++|.+.....++-+.| . ..+.++.++|.++++........+.++.|.
T Consensus 114 ~~~~~~~~~FDPiH~GHl~ii~~a~~~~d~~~V~i~~-------~-~~~~~~~e~R~~ml~~ai~~~~~v~v~~~~~l~v 185 (297)
T cd02169 114 KKIAAIVMNANPFTLGHRYLVEKAAAENDWVHLFVVS-------E-DKSLFSFADRFKLVKKGTKHLKNVTVHSGGDYII 185 (297)
T ss_pred CceEEEEecCCCCchHHHHHHHHHHhhCCeEEEEEEc-------C-CCCCCCHHHHHHHHHHHhCCCCCEEEEecCCeee
Confidence 4677889999999999999999998865444443322 1 235679999999988765333444333221
Q ss_pred ------ccc--------cccCCCCHHHHHHHHHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcceecc
Q 016934 180 ------IQF--------SSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDK 245 (380)
Q Consensus 180 ------~~F--------a~i~~ls~e~Fie~L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~~~ 245 (380)
.-| +++++++|++|++.|.++|+++.||||+|||||++|+||...++ .++++||+|++++++..+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~a~lsa~~Fi~iL~~~l~~~~ivvG~Df~FG~~r~G~~~l~~-~~~~~gf~v~~v~~~~~~ 264 (297)
T cd02169 186 SSATFPSYFIKEQDVVIKAQTALDARIFRKYIAPALNITKRYVGEEPFSRVTAIYNQTMQE-ELLSPAIEVIEIERKKYD 264 (297)
T ss_pred ccccChhhhcCChhHHHHHHhcCCHHHHHHHHHHHcCCcEEEEcCCCCCCCcchhHHHHHH-hcccCCCEEEEecccccC
Confidence 111 23568999999994456899999999999999999999955554 499999999999998765
Q ss_pred CCCCCcccCCCCccCCccchHHHHHHHHcCCchhhhhhcce
Q 016934 246 HQDSRDIDCNDSKERGQVSSTRVRQALAMGDMKYVSELLGR 286 (380)
Q Consensus 246 ~~~~~~~~~~~~~~~~~ISST~IR~~L~~GdI~~An~LLGr 286 (380)
+ ++||||+||++|++||++.|++||-.
T Consensus 265 g--------------~~ISST~IR~~l~~G~v~~A~~lLp~ 291 (297)
T cd02169 265 G--------------QPISASTVRQLLKEGNLEEIAKLVPE 291 (297)
T ss_pred C--------------cEEcHHHHHHHHHcCCHHHHHHhCCH
Confidence 4 79999999999999999999999964
No 8
>PF01687 Flavokinase: Riboflavin kinase; InterPro: IPR015865 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents the riboflavin kinase domains from bacteria and eukaryotes.; GO: 0008531 riboflavin kinase activity, 0009231 riboflavin biosynthetic process; PDB: 1Q9S_A 1NB9_A 1P4M_A 1NB0_A 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A ....
Probab=99.92 E-value=5.3e-26 Score=197.27 Aligned_cols=87 Identities=28% Similarity=0.294 Sum_probs=77.1
Q ss_pred hcceeeeEEEEEeecccccccCCCcccCCCCCCCC----CCCCCCcEEEEEEEEcCccc----ceeeceEEeCCceEEEE
Q 016934 283 LLGRQHRLILTVNDHDELISTSNKHRVSVPKSCLL----NLPPKEGFYGNSVLLFGEEN----PVKCRICIDASHIHLEM 354 (380)
Q Consensus 283 LLGrpy~i~G~Vv~G~~~~~~~~Gr~lGfPTANl~----~llP~~GVYav~v~~~g~~~----~iG~rpt~~~~~~~vE~ 354 (380)
||||||.++|+|+||.++ ||+||||||||. .++|+.|||++++.+++.++ |||.||||+++...|||
T Consensus 1 LLG~py~i~G~Vv~G~~~-----Gr~lGfPTANl~~~~~~~~p~~GVYa~~v~~~~~~~~~v~niG~~PTf~~~~~~vE~ 75 (125)
T PF01687_consen 1 LLGRPYSISGTVVHGFGR-----GRKLGFPTANLDIPDDKLLPKEGVYAVWVRVDGKWYPGVTNIGYRPTFDGKERTVEV 75 (125)
T ss_dssp HHTSSEEEEEEEEC-SSC-----CCCTTS-EEEEEEHCCCTCCCTEEEEEEEEETSEEEEEEEEEEEETTTSSCEEEEEE
T ss_pred CcCCCEEEEEEEEeCCcc-----ccccCCccccccCCcccccccCEEEEEEEEECCEEEEeEEEecCCCccCcCceeEEE
Confidence 799999999999999987 999999999995 68999999999999998876 68999999889999999
Q ss_pred eeccCCCCCCCCCCceEEEEEcc
Q 016934 355 DKVGFCNFDHSQDFKLLGIEFGD 377 (380)
Q Consensus 355 h~l~~~df~~~~yg~~l~vef~~ 377 (380)
|++ ||++|+||+.|+|+|..
T Consensus 76 hil---df~~dlYg~~i~v~~~~ 95 (125)
T PF01687_consen 76 HIL---DFDGDLYGKKIKVEFLK 95 (125)
T ss_dssp EET---TSSSE-TTSEEEEEEEE
T ss_pred EEe---ccCcccCCCeEEEEEEe
Confidence 766 59999999999999953
No 9
>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain. Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.
Probab=99.92 E-value=2e-24 Score=198.20 Aligned_cols=154 Identities=18% Similarity=0.147 Sum_probs=120.3
Q ss_pred eecCccCHHHHHHHHHHHHhCCCEEEeecCcccccccCCCCCCCChHHHHHHHHhcCCccCeEEEEec----------cc
Q 016934 111 GKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEF----------QI 180 (380)
Q Consensus 111 G~FDGvHlGHq~LI~~A~~~g~~~VvtF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD~vv~~~F----------~~ 180 (380)
=+||.+|.||..++++|.+.-....+-+-|. ..+.++.++|.++++..-.+.+.+.+.++ -.
T Consensus 6 ~~~DPiH~GHl~i~~~a~~~~d~~~V~v~p~--------~~~~~s~e~R~~Mi~~a~~~~~~v~v~~~~~~~v~~~~~~~ 77 (182)
T smart00764 6 MNANPFTLGHRYLVEQAAAECDWVHLFVVSE--------DASLFSFDERFALVKKGTKDLDNVTVHSGSDYIISRATFPS 77 (182)
T ss_pred ECCCCCCHHHHHHHHHHHHHCCceEEEEEeC--------CCCCCCHHHHHHHHHHHhccCCCEEEEecCCceeccccChh
Confidence 4899999999999999988754433333221 12466899999988776323333333332 11
Q ss_pred cc--------cccCCCCHHHHHHHHHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcceeccCCCCCcc
Q 016934 181 QF--------SSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDI 252 (380)
Q Consensus 181 ~F--------a~i~~ls~e~Fie~L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~~ 252 (380)
-| ..-++++|++|++.|.++|++++||||+|||||++|+||+++|+++. ++||++.+++++..+
T Consensus 78 ~~~~~~~~~~~~~a~lsa~~Fi~~L~~~l~~~~ivvG~df~FG~~~~G~~~~L~~~~-~~g~~v~~I~r~~~~------- 149 (182)
T smart00764 78 YFLKEQDVVIKSQTTLDLRIFRKYIAPALGITHRYVGEEPFSPVTAIYNQTMKQTLL-SPAIEVVEIERKKAN------- 149 (182)
T ss_pred hhcCchhHHHHHHhcCCHHHHHHHHHHHcCceEEEEcCCCCCCCCCccCHHHHHHHh-hCCCEEEEEecccCC-------
Confidence 22 11268999999987778899999999999999999999999999994 889999999987654
Q ss_pred cCCCCccCCccchHHHHHHHHcCCchhhhhhccee
Q 016934 253 DCNDSKERGQVSSTRVRQALAMGDMKYVSELLGRQ 287 (380)
Q Consensus 253 ~~~~~~~~~~ISST~IR~~L~~GdI~~An~LLGrp 287 (380)
++.||||+||++|.+|++++|+++|.-.
T Consensus 150 -------g~~iSST~IR~~L~~G~v~~a~~lLP~~ 177 (182)
T smart00764 150 -------GQPISASTVRKLLKEGNLEELAKLVPET 177 (182)
T ss_pred -------CcEECHHHHHHHHHcCCHHHHHHhCCHH
Confidence 3789999999999999999999999653
No 10
>cd02172 RfaE_N N-terminal domain of RfaE. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .
Probab=99.92 E-value=1.6e-24 Score=191.63 Aligned_cols=132 Identities=19% Similarity=0.218 Sum_probs=107.9
Q ss_pred CceEEEEeecCccCHHHHHHHHHHHHhCCCEEEeecCcccccccCCCCCCCChHHHHHHHHhcCCccCeEEEEecccccc
Q 016934 104 AGGIVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQIQFS 183 (380)
Q Consensus 104 ~~~vvtIG~FDGvHlGHq~LI~~A~~~g~~~VvtF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD~vv~~~F~~~Fa 183 (380)
+++++|+|+|||+|+|||+||++|++.+.+++++|.+. +++.+.+..++++.++|.++|++++ +||.+++.+|
T Consensus 4 ~~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~vv~~~~d-~~~~~~~~~~i~~~~eR~~~l~~lg-~VD~vi~~~~----- 76 (144)
T cd02172 4 KTVVLCHGVFDLLHPGHVRHLQAARSLGDILVVSLTSD-RYVNKGPGRPIFPEDLRAEVLAALG-FVDYVVLFDN----- 76 (144)
T ss_pred CEEEEEecccCCCCHHHHHHHHHHHHhCCeEEEEEeCh-HHhccCCCCCCCCHHHHHHHHHccC-CccEEEECCC-----
Confidence 46789999999999999999999999988878888762 2343333467899999999999998 4898887663
Q ss_pred ccCCCCHHHHHHHHHHhhCccEEEEcCCCCCCCCC-----CCCHHHHHHHHhhcCcEEEEEcceeccCCCCCcccCCCCc
Q 016934 184 SVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKA-----AGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSK 258 (380)
Q Consensus 184 ~i~~ls~e~Fie~L~~~L~vk~IVVG~DFrFG~~r-----~Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~~~~~~~~ 258 (380)
++|++|++ +++++.||+|+||+||+++ +|+++.|++++.++++. . .
T Consensus 77 ----~~~~~fi~----~l~~~~vv~G~d~~fg~~~~~~~~~g~~~~l~~~g~~~~~~-----~--~-------------- 127 (144)
T cd02172 77 ----PTALEIID----ALQPNIYVKGGDYENPENDVTGKIAPEAEAVKAYGGKIVFT-----G--E-------------- 127 (144)
T ss_pred ----CCHHHHHH----HhCCCEEEECCCcccCccccccchhhhHHHHHHhCCEEEEe-----c--C--------------
Confidence 68999987 4899999999999999987 89999999887765543 1 1
Q ss_pred cCCccchHHHHHHHH
Q 016934 259 ERGQVSSTRVRQALA 273 (380)
Q Consensus 259 ~~~~ISST~IR~~L~ 273 (380)
..+|||.|.+.|.
T Consensus 128 --~~~sts~li~~i~ 140 (144)
T cd02172 128 --IVFSSSALINRIF 140 (144)
T ss_pred --CCcchHHHHHHHH
Confidence 3489999988775
No 11
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=99.91 E-value=1.4e-23 Score=185.39 Aligned_cols=130 Identities=25% Similarity=0.315 Sum_probs=103.9
Q ss_pred CceEEEEeecCccCHHHHHHHHHHHHhCCC--EEEeecC-cccccccCCCCCCCChHHHHHHHHhcCCccCeEEEEeccc
Q 016934 104 AGGIVALGKFDALHIGHRELAIQASKIGAP--YLLSFIG-MAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQI 180 (380)
Q Consensus 104 ~~~vvtIG~FDGvHlGHq~LI~~A~~~g~~--~VvtF~~-P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD~vv~~~F~~ 180 (380)
.++++|+|+|||+|+|||++|++|++.+.. ++++||+ |.. +... ..|+++.++|.++|++++ ++|.+++ |
T Consensus 11 ~~~v~~~G~FDgvH~GH~~ll~~a~~~~~~~~v~v~~d~~~~~-~k~~-~~~l~~~eeR~~~l~~~~-~VD~vi~--f-- 83 (144)
T TIGR02199 11 KKIVFTNGCFDILHAGHVSYLQQARALGDRLVVGVNSDASVKR-LKGE-TRPINPEEDRAEVLAALS-SVDYVVI--F-- 83 (144)
T ss_pred CCEEEEeCcccccCHHHHHHHHHHHHhCCccEEEEECCcCHHH-hCCC-CCCcCCHHHHHHHHHhcC-CCCEEEE--C--
Confidence 468899999999999999999999998764 4588888 665 4322 256999999999999996 4898775 4
Q ss_pred cccccCCCCHHHHHHHHHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcceeccCCCCCcccCCCCccC
Q 016934 181 QFSSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKER 260 (380)
Q Consensus 181 ~Fa~i~~ls~e~Fie~L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~~~~~~~~~~ 260 (380)
+ .++|++|++ .++++.+|+|+||+|-. .. -.++++++|.++.+++..
T Consensus 84 --~---~~~~~~fi~----~l~~~~vv~G~d~~~~~-----~~-~~~~~~~~g~~v~~~~~~------------------ 130 (144)
T TIGR02199 84 --D---EDTPEELIG----ELKPDILVKGGDYKVET-----LV-GAELVESYGGQVVLLPFV------------------ 130 (144)
T ss_pred --C---CCCHHHHHH----HhCCCEEEECCCCCCCc-----ch-hHHHHHHcCCEEEEEeCC------------------
Confidence 3 589999996 58999999999999821 11 125677899999888752
Q ss_pred CccchHHHHHHHH
Q 016934 261 GQVSSTRVRQALA 273 (380)
Q Consensus 261 ~~ISST~IR~~L~ 273 (380)
..||||.||+.|.
T Consensus 131 ~~iSSs~Ir~ri~ 143 (144)
T TIGR02199 131 EGRSTTAIIEKIL 143 (144)
T ss_pred CCcCHHHHHHHHh
Confidence 3599999999874
No 12
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.
Probab=99.88 E-value=1.8e-22 Score=173.59 Aligned_cols=123 Identities=21% Similarity=0.287 Sum_probs=97.8
Q ss_pred EEEEeecCccCHHHHHHHHHHHHhCCCEE--EeecCcccccccCCCCCCCChHHHHHHHHhcCCccCeEEEEeccccccc
Q 016934 107 IVALGKFDALHIGHRELAIQASKIGAPYL--LSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQIQFSS 184 (380)
Q Consensus 107 vvtIG~FDGvHlGHq~LI~~A~~~g~~~V--vtF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD~vv~~~F~~~Fa~ 184 (380)
++|+|+|||+|+|||++|++|++.+.+.+ ++|++ +....++.++++.++|.++|++++ +||.+ ++|
T Consensus 1 v~~~G~FDg~H~GH~~~l~~a~~~~~~~iv~v~~d~---~~~~~~~~~i~~~eeR~~~l~~~~-~Vd~v--i~~------ 68 (125)
T TIGR01518 1 VLTYGTFDLLHWGHINLLERAKQLGDYLIVALSTDE---FNLQKQKKAYHSYEHRKLILETIR-YVDLV--IPE------ 68 (125)
T ss_pred CEEcceeCCCCHHHHHHHHHHHHcCCEEEEEEechH---HHhhcCCCCCCCHHHHHHHHHcCC-CccEE--ecC------
Confidence 48999999999999999999999886533 56654 222223457889999999999997 48887 343
Q ss_pred cCCCCHHHHHHHHHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcceeccCCCCCcccCCCCccCCccc
Q 016934 185 VRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVS 264 (380)
Q Consensus 185 i~~ls~e~Fie~L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~~~~~~~~~~~~IS 264 (380)
+++++|++.+ +.++++.+++|+|| .|+.++|+++ +|+++.++++ +..||
T Consensus 69 ---~~~~~f~~~l-~~~~~~~vv~G~D~------~g~~~~l~~~---~~~~v~~v~~------------------~~~vS 117 (125)
T TIGR01518 69 ---KSWEQKKQDI-IDFNIDVFVMGDDW------EGKFDFLKDE---CPLKVVYLPR------------------TEGVS 117 (125)
T ss_pred ---CCccchHHHH-HHcCCCEEEECCCc------cchHHHHhhc---cCcEEEEeCC------------------CCCcc
Confidence 5778899875 78999999999999 4788899876 4888888764 15799
Q ss_pred hHHHHHHH
Q 016934 265 STRVRQAL 272 (380)
Q Consensus 265 ST~IR~~L 272 (380)
||+||++|
T Consensus 118 ST~Ir~~~ 125 (125)
T TIGR01518 118 TTKIKKEI 125 (125)
T ss_pred HHHHHhhC
Confidence 99999975
No 13
>cd02170 cytidylyltransferase cytidylyltransferase. The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.
Probab=99.88 E-value=2.6e-22 Score=174.31 Aligned_cols=131 Identities=23% Similarity=0.291 Sum_probs=101.5
Q ss_pred ceEEEEeecCccCHHHHHHHHHHHHhCCC--EEEeecCcccccccCCCCCCCChHHHHHHHHhcCCccCeEEEEeccccc
Q 016934 105 GGIVALGKFDALHIGHRELAIQASKIGAP--YLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQIQF 182 (380)
Q Consensus 105 ~~vvtIG~FDGvHlGHq~LI~~A~~~g~~--~VvtF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD~vv~~~F~~~F 182 (380)
..++++|+|||+|+||++++++|++.+.. ++++|++ ++.+.+..++++.++|.++++++. ++|.+++
T Consensus 2 ~~v~~~G~FD~~H~GH~~ll~~a~~~~~~l~v~v~~~~---~~~~~~~~~~~~~~eR~~~l~~~~-~vd~v~~------- 70 (136)
T cd02170 2 KRVYAAGTFDIIHPGHIRFLEEAKKLGDYLIVGVARDE---TVAKIKRRPILPEEQRAEVVEALK-YVDEVIL------- 70 (136)
T ss_pred eEEEEcCccCCCCHHHHHHHHHHHHhCCEEEEEECCcH---HHHhcCCCCCCCHHHHHHHHHcCC-CcCEEEE-------
Confidence 36899999999999999999999998743 4477764 222222347889999999999974 3887664
Q ss_pred cccCCCCHHHHHHHHHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcceeccCCCCCcccCCCCccCCc
Q 016934 183 SSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQ 262 (380)
Q Consensus 183 a~i~~ls~e~Fie~L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~~~~~~~~~~~~ 262 (380)
.+|++|++.| ..++++.+|+|+||+||++++++++.|+++ |..+. +.+ .+ +..
T Consensus 71 -----~~~~~~~~~l-~~~~~~~vv~G~d~~fg~~~~~~~~~l~~~----g~~~~-~~~--~~--------------~~~ 123 (136)
T cd02170 71 -----GHPWSYFKPL-EELKPDVIVLGDDQKNGVDEEEVYEELKKR----GKVIE-VPR--KK--------------TEG 123 (136)
T ss_pred -----CCCCCHhHHH-HHHCCCEEEECCCCCCCCcchhHHHHHHHC----CeEEE-ECC--CC--------------CCC
Confidence 2467888865 568999999999999999999999999875 44444 333 22 267
Q ss_pred cchHHHHHHHH
Q 016934 263 VSSTRVRQALA 273 (380)
Q Consensus 263 ISST~IR~~L~ 273 (380)
||||+||++|+
T Consensus 124 vSSt~Ir~~i~ 134 (136)
T cd02170 124 ISSSDIIKRIL 134 (136)
T ss_pred CcHHHHHHHHH
Confidence 99999999985
No 14
>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.
Probab=99.87 E-value=9.2e-22 Score=169.38 Aligned_cols=123 Identities=24% Similarity=0.359 Sum_probs=97.0
Q ss_pred eEEEEeecCccCHHHHHHHHHHHHhCCC--EEEeecCcccccccCCCCCCCChHHHHHHHHhcCCccCeEEEEecccccc
Q 016934 106 GIVALGKFDALHIGHRELAIQASKIGAP--YLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQIQFS 183 (380)
Q Consensus 106 ~vvtIG~FDGvHlGHq~LI~~A~~~g~~--~VvtF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD~vv~~~F~~~Fa 183 (380)
.++++|+|||+|+|||++|++|++.+.. ++++|++ +....+..++++.++|.+++++++ ++|.++ +|
T Consensus 3 ~v~~~G~FDgvH~GH~~ll~~a~~~~~~l~v~v~~d~---~~~~~~~~~~~~~~~R~~~l~~~~-~vd~v~--~~----- 71 (129)
T cd02171 3 VVITYGTFDLLHIGHLNLLERAKALGDKLIVAVSTDE---FNAGKGKKAVIPYEQRAEILESIR-YVDLVI--PE----- 71 (129)
T ss_pred EEEEeeeeccCCHHHHHHHHHHHHhCCEEEEEEeccH---hHHhcCCCCCCCHHHHHHHHHcCC-ccCEEe--cC-----
Confidence 6899999999999999999999998764 4578874 111122357889999999999996 488763 33
Q ss_pred ccCCCCHHHHHHHHHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcceeccCCCCCcccCCCCccCCcc
Q 016934 184 SVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQV 263 (380)
Q Consensus 184 ~i~~ls~e~Fie~L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~~~~~~~~~~~~I 263 (380)
+++++|++.+ ++++++.+|+|+|| .|+++.|++++ ++.+++. +..|
T Consensus 72 ----~~~~~f~~~~-~~l~~~~vv~G~d~------~g~~~~l~~~~-----~v~~~~~------------------~~~i 117 (129)
T cd02171 72 ----TNWEQKIEDI-KKYNVDVFVMGDDW------EGKFDFLKEYC-----EVVYLPR------------------TKGI 117 (129)
T ss_pred ----CCccChHHHH-HHhCCCEEEECCCC------cchHHHHHhCc-----EEEEeCC------------------CCCc
Confidence 5677888865 78999999999999 47889998875 4666652 2679
Q ss_pred chHHHHHHHH
Q 016934 264 SSTRVRQALA 273 (380)
Q Consensus 264 SST~IR~~L~ 273 (380)
|||+||++|+
T Consensus 118 SSt~Ir~~i~ 127 (129)
T cd02171 118 SSTQLKEMLK 127 (129)
T ss_pred ChHHHHHHHh
Confidence 9999999996
No 15
>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain. Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.
Probab=99.82 E-value=1.5e-19 Score=154.77 Aligned_cols=138 Identities=22% Similarity=0.312 Sum_probs=106.6
Q ss_pred EEEEeecCccCHHHHHHHHHHHHhC-CC-EEEeecC-cccccccCCCCCCCChHHHHHHHHhcCCccCeEEEEecccccc
Q 016934 107 IVALGKFDALHIGHRELAIQASKIG-AP-YLLSFIG-MAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQIQFS 183 (380)
Q Consensus 107 vvtIG~FDGvHlGHq~LI~~A~~~g-~~-~VvtF~~-P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD~vv~~~F~~~Fa 183 (380)
++++|.||++|.||++|+++|++.+ .. .|+++.+ |.... ..++++..+|.++++.++...+.+++++++....
T Consensus 2 ~~~~G~Fdp~H~GH~~ll~~a~~~~~~~~~v~~~~~~~~~~~----~~~~~~~~~R~~~l~~~~~~~~~v~~~~~~~~~~ 77 (143)
T cd02039 2 GIIIGRFEPFHLGHLKLIKEALEEALDEVIIIIVSNPPKKKR----NKDPFSLHERVEMLKEILKDRLKVVPVDFPEVKI 77 (143)
T ss_pred eEEeeccCCcCHHHHHHHHHHHHHcCCceEEEEcCCChhhcc----cccCCCHHHHHHHHHHhccCCcEEEEEecChhhc
Confidence 6899999999999999999999987 55 4455654 33211 2357789999999999874368888888876543
Q ss_pred ccCCCCHHHHHHHHHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcceeccCCCCCcccCCCCccCCcc
Q 016934 184 SVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQV 263 (380)
Q Consensus 184 ~i~~ls~e~Fie~L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~~~~~~~~~~~~I 263 (380)
..+.+|+..+...++++.+++|+||.||.+++++ +.++++ ..++++.++++.. + +..|
T Consensus 78 ----~~~~~~~~~~~~~~~~~~~v~G~d~~~~~~~~~~-~~~~~~--~~~~~vv~~~~~~-~--------------~~~i 135 (143)
T cd02039 78 ----LLAVVFILKILLKVGPDKVVVGEDFAFGKNASYN-KDLKEL--FLDIEIVEVPRVR-D--------------GKKI 135 (143)
T ss_pred ----cCHHHHHHHHHHHcCCcEEEECCccccCCchhhh-HHHHHh--CCceEEEeeEecC-C--------------CcEE
Confidence 5677888877778999999999999999999998 666655 3566666665532 1 3689
Q ss_pred chHHHHH
Q 016934 264 SSTRVRQ 270 (380)
Q Consensus 264 SST~IR~ 270 (380)
|||+||+
T Consensus 136 SSt~IR~ 142 (143)
T cd02039 136 SSTLIRE 142 (143)
T ss_pred ehHHhhc
Confidence 9999997
No 16
>PLN02940 riboflavin kinase
Probab=99.81 E-value=3.8e-20 Score=186.97 Aligned_cols=90 Identities=11% Similarity=-0.017 Sum_probs=78.9
Q ss_pred hhhhcceeeeEEEEEeecccccccCCCcc-cCCCCCCCC-----CCC--CCCcEEEEEEEEcCc-cc----ceeeceEEe
Q 016934 280 VSELLGRQHRLILTVNDHDELISTSNKHR-VSVPKSCLL-----NLP--PKEGFYGNSVLLFGE-EN----PVKCRICID 346 (380)
Q Consensus 280 An~LLGrpy~i~G~Vv~G~~~~~~~~Gr~-lGfPTANl~-----~ll--P~~GVYav~v~~~g~-~~----~iG~rpt~~ 346 (380)
-+.||||||+++|+|+||+++ ||+ ||||||||. +++ |+.|||++++.+++. ++ |||.||||+
T Consensus 231 ~~~~~~~~y~~~G~Vv~G~~~-----G~~~lg~PTaNl~~~~~~~~~~~p~~GVY~~~~~~~~~~~~~~v~niG~~Pt~~ 305 (382)
T PLN02940 231 EGTLPIEPWHIGGPVIKGFGR-----GSKVLGIPTANLSTENYSDVLSEHPSGVYFGWAGLSTRGVYKMVMSIGWNPYFN 305 (382)
T ss_pred cCcCCcCCEEEEEEEEeCCcc-----CcccCCCCcccCCcchhhhhcCCCCCEEEEEEEEECCCceEEEEEEecCCCccC
Confidence 467999999999999999988 999 899999995 245 589999999998764 44 689999998
Q ss_pred CCceEEEEeeccCCCCCCCCCCceEEEEEc
Q 016934 347 ASHIHLEMDKVGFCNFDHSQDFKLLGIEFG 376 (380)
Q Consensus 347 ~~~~~vE~h~l~~~df~~~~yg~~l~vef~ 376 (380)
++...||||++| ||++|+||+.|+|+|.
T Consensus 306 ~~~~~~E~~i~~--df~~dlyg~~i~v~~~ 333 (382)
T PLN02940 306 NTEKTIEPWLLH--DFGEDFYGEELRLVIV 333 (382)
T ss_pred CCccEEEEEEeC--CCCCCCCCCeEEEEEe
Confidence 777789998886 8999999999999995
No 17
>cd00560 PanC Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=99.77 E-value=4.2e-19 Score=172.73 Aligned_cols=124 Identities=17% Similarity=0.172 Sum_probs=107.3
Q ss_pred ceEEEEeecCccCHHHHHHHHHHHHhCCCEEEeecC-cccccccCC-CCCCCChHHHHHHHHhcCCccCeEEEEeccccc
Q 016934 105 GGIVALGKFDALHIGHRELAIQASKIGAPYLLSFIG-MAEVFGWEP-RAPIVAKCDRKRVLSSWAPYCGNVAPVEFQIQF 182 (380)
Q Consensus 105 ~~vvtIG~FDGvHlGHq~LI~~A~~~g~~~VvtF~~-P~~vl~~~~-~~~l~s~~~R~~lL~~lg~~vD~vv~~~F~~~F 182 (380)
+.|+|+|+ +|.|||+||++|++.+..+|+||++ |..+...+. ...+.+.+++.++|+++| +|.+ |+.+|
T Consensus 25 g~V~TmG~---LH~GH~~LI~~a~~~a~~vVvtf~~nP~qf~~~ed~~~y~~t~e~d~~ll~~~G--vD~v----F~p~~ 95 (277)
T cd00560 25 GFVPTMGA---LHEGHLSLVRRARAENDVVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEEAG--VDLL----FAPSV 95 (277)
T ss_pred EEEECCCc---ccHHHHHHHHHHHHhCCEEEEEecCChhhcCCcccccccCCCHHHHHHHHHHCC--CCEE----ECCCH
Confidence 67899999 9999999999999988778899998 877443222 234678899999999998 8866 88888
Q ss_pred cccCCCCHHHHHHHHHHhhCccEEEEcC----------------------C-CCCCCCCCCCHHHHHHHHhhcCcEEEEE
Q 016934 183 SSVRHLSPQQFVEKLSRELGVRGVVAGE----------------------N-YRFGYKAAGDASELVRLCEEYGMDACII 239 (380)
Q Consensus 183 a~i~~ls~e~Fie~L~~~L~vk~IVVG~----------------------D-FrFG~~r~Gd~~~Lk~l~~~~G~~v~iV 239 (380)
+ .|+|++|++.+++.++++.+++|+ | |+||+++.|+...|+++++++|+++.++
T Consensus 96 ~---~m~p~~f~~~~v~~~~~~~il~G~~RpghF~GV~tvv~kLf~iv~Pd~~~FG~kd~gq~~~Lk~~~~dl~~~v~ii 172 (277)
T cd00560 96 E---EMYPEGLFSTFVDVGPLSEVLEGASRPGHFRGVATVVAKLFNLVQPDRAYFGEKDAQQLAVIRRMVRDLNLPVEIV 172 (277)
T ss_pred H---HcCCCCCceEEEecCCCceEEecCCCCccccceeeeehhhhcccCCCeEEECCCccccHHHHHHHHHHcCCeEEEE
Confidence 8 599999986566778999999999 9 9999999999999999999999999999
Q ss_pred c
Q 016934 240 N 240 (380)
Q Consensus 240 ~ 240 (380)
+
T Consensus 173 ~ 173 (277)
T cd00560 173 G 173 (277)
T ss_pred c
Confidence 4
No 18
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=99.75 E-value=6e-18 Score=169.69 Aligned_cols=130 Identities=18% Similarity=0.228 Sum_probs=102.9
Q ss_pred ceEEEEeecCccCHHHHHHHHHHHHhCCCEEEeecC-cccccccCCCCCCCChHHHHHHHHhcCCccCeEEE-Eeccccc
Q 016934 105 GGIVALGKFDALHIGHRELAIQASKIGAPYLLSFIG-MAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAP-VEFQIQF 182 (380)
Q Consensus 105 ~~vvtIG~FDGvHlGHq~LI~~A~~~g~~~VvtF~~-P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD~vv~-~~F~~~F 182 (380)
..|+++|+|||+|.||+.+|++|++.|.. ++|.. |.+.+.....+|+++.++|.++|++++ +||.++. .||+..
T Consensus 12 ~~v~~~G~FD~vH~GH~~~L~qAk~~g~~--Livgv~~d~~i~~~K~~pi~~~eeR~~~l~~~~-~VD~Vv~~~p~~~~- 87 (353)
T PTZ00308 12 IRVWVDGCFDMLHFGHANALRQARALGDE--LFVGCHSDEEIMRNKGPPVMHQEERYEALRACK-WVDEVVEGYPYTTR- 87 (353)
T ss_pred EEEEEEeecccCCHHHHHHHHHHHHhCCE--EEEEeCCHHHHhhcCCCCCCCHHHHHHHHHhcC-CccEEEECCCCCch-
Confidence 47899999999999999999999999864 45554 655554333357999999999999998 6999887 676532
Q ss_pred cccCCCCHHHHHHHHHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcceeccCCCCCcccCCCCccCCc
Q 016934 183 SSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQ 262 (380)
Q Consensus 183 a~i~~ls~e~Fie~L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~~~~~~~~~~~~ 262 (380)
.+|+ ++++++.+|+|+||+||+++.++++.|++.++ +..++.. +.
T Consensus 88 --------~~fI----~~l~~d~vv~GdD~~~g~~g~~~~~~lk~~G~-----~~~v~rt------------------~g 132 (353)
T PTZ00308 88 --------LEDL----ERLECDFVVHGDDISVDLNGRNSYQEIIDAGK-----FKVVKRT------------------EG 132 (353)
T ss_pred --------HHHH----HHhCCCEEEECCCCCCCCCccchHHHHHhCCe-----EEEEecC------------------CC
Confidence 3465 57899999999999999999999999987543 4455541 34
Q ss_pred cchHHHHHHHH
Q 016934 263 VSSTRVRQALA 273 (380)
Q Consensus 263 ISST~IR~~L~ 273 (380)
+|||.|.+.|.
T Consensus 133 ~STt~ii~ril 143 (353)
T PTZ00308 133 ISTTDLVGRML 143 (353)
T ss_pred CCHHHHHHHHH
Confidence 99999988776
No 19
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed
Probab=99.70 E-value=1.3e-17 Score=162.65 Aligned_cols=126 Identities=19% Similarity=0.181 Sum_probs=105.8
Q ss_pred ceEEEEeecCccCHHHHHHHHHHHHhCCCEEEeecC-cccccccC-CCCCCCChHHHHHHHHhcCCccCeEEEEeccccc
Q 016934 105 GGIVALGKFDALHIGHRELAIQASKIGAPYLLSFIG-MAEVFGWE-PRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQIQF 182 (380)
Q Consensus 105 ~~vvtIG~FDGvHlGHq~LI~~A~~~g~~~VvtF~~-P~~vl~~~-~~~~l~s~~~R~~lL~~lg~~vD~vv~~~F~~~F 182 (380)
+-++|+|+ +|+|||+||++|++.+..+|+||++ |..++.++ ....+.+.++|.++|+.+| +|.++.. ++
T Consensus 25 ~~v~tmG~---lH~GH~~Li~~a~~~a~~vVvTf~~~P~qf~~~~~~~~~~~t~e~~~~ll~~~G--vD~v~~p----~~ 95 (281)
T PRK00380 25 GLVPTMGA---LHEGHLSLVREARAEADIVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEAAG--VDLVFAP----SV 95 (281)
T ss_pred EEEEccCc---eeHHHHHHHHHHHHhCCEEEEeCCCCHHHhCCCccccccCCCHHHHHHHHHHcC--CCEEEeC----CH
Confidence 56789999 9999999999999988778899998 88765433 2234678899999999999 8877654 45
Q ss_pred cccCCCCHHHHHHHHHHhhCccEEEEcC----------------------CC-CCCCCCCCCHHHHHHHHhhcCcEEEEE
Q 016934 183 SSVRHLSPQQFVEKLSRELGVRGVVAGE----------------------NY-RFGYKAAGDASELVRLCEEYGMDACII 239 (380)
Q Consensus 183 a~i~~ls~e~Fie~L~~~L~vk~IVVG~----------------------DF-rFG~~r~Gd~~~Lk~l~~~~G~~v~iV 239 (380)
+ .|.|++|+..+... +++.+++|+ || +||+++.|+...|+++++++|+++.++
T Consensus 96 ~---~myp~~f~~~i~~~-~~~~vl~G~~RpghF~Gv~tvv~kLf~iv~Pd~a~FG~kd~qq~~~l~~~~~~l~~~v~ii 171 (281)
T PRK00380 96 E---EMYPQGLQTYVSVP-GLSDVLEGASRPGHFRGVATVVTKLFNIVQPDVAYFGEKDYQQLAVIRRMVADLNLPVEIV 171 (281)
T ss_pred H---HCCCccceeEEEcc-cccccccCCCCCccccchhhHHHHHhhccCCCeeEECCCcchhHHHHHHHHHHcCCceEEE
Confidence 5 59999999764322 289999999 99 999999999999999999999999999
Q ss_pred --ccee
Q 016934 240 --NSVM 243 (380)
Q Consensus 240 --~~v~ 243 (380)
|.+.
T Consensus 172 ~~p~vr 177 (281)
T PRK00380 172 GVPTVR 177 (281)
T ss_pred ecCceE
Confidence 8877
No 20
>PRK13670 hypothetical protein; Provisional
Probab=99.64 E-value=3.9e-15 Score=151.18 Aligned_cols=107 Identities=21% Similarity=0.295 Sum_probs=87.5
Q ss_pred eEEEEeecCccCHHHHHHHHHHHHh---CCCEEEeecCcccccccCCCCCCCChHHHHHHHHhcCCccCeEEEEeccccc
Q 016934 106 GIVALGKFDALHIGHRELAIQASKI---GAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQIQF 182 (380)
Q Consensus 106 ~vvtIG~FDGvHlGHq~LI~~A~~~---g~~~VvtF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD~vv~~~F~~~F 182 (380)
++-.|--|||+|.|||.+|++|++. +..++|. |..++.+.. +.|++..+|.+++..+| +|.|+.+||+ |
T Consensus 3 ~~GIIaEfdg~H~GH~~~i~~a~~~a~~~~~~~Vm---p~~f~qrg~-p~i~~~~~R~~~a~~~G--vD~vielpf~--~ 74 (388)
T PRK13670 3 VTGIIVEYNPFHNGHLYHLNQAKKLTNADVTIAVM---SGNFVQRGE-PAIVDKWTRAKMALENG--VDLVVELPFL--Y 74 (388)
T ss_pred eeEEEeeeCCcCHHHHHHHHHHHHHHhCCCcEEEe---cHHHhCCCC-CCCCCHHHHHHHHHHcC--CCEEEEeCCc--h
Confidence 3445678999999999999999875 3333333 666665433 34899999999999999 9999999998 8
Q ss_pred cccCCCCHHHHHHH---HHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHh
Q 016934 183 SSVRHLSPQQFVEK---LSRELGVRGVVAGENYRFGYKAAGDASELVRLCE 230 (380)
Q Consensus 183 a~i~~ls~e~Fie~---L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~ 230 (380)
+ .++|++|++. ++..|+++.||+|+| +||++.|+++++
T Consensus 75 a---~~sae~F~~~aV~iL~~l~v~~lv~G~e-------~g~~~~L~~~~~ 115 (388)
T PRK13670 75 S---VQSADFFAEGAVSILDALGVDSLVFGSE-------SGDIEDFQKIAK 115 (388)
T ss_pred H---hCCHHHHHHhHHHHHHHcCCCEEEEcCC-------CCCHHHHHHHHH
Confidence 7 6999999997 668899999999999 789988887764
No 21
>PLN02388 phosphopantetheine adenylyltransferase
Probab=99.57 E-value=3e-14 Score=130.58 Aligned_cols=140 Identities=17% Similarity=0.208 Sum_probs=92.2
Q ss_pred CCceEEEEeecCccCHHHHHHHHHHHHhCC-CEEEeecC-cccccccCC-CCCCCChHHHHHHHHhcCCcc--C-eEEEE
Q 016934 103 VAGGIVALGKFDALHIGHRELAIQASKIGA-PYLLSFIG-MAEVFGWEP-RAPIVAKCDRKRVLSSWAPYC--G-NVAPV 176 (380)
Q Consensus 103 ~~~~vvtIG~FDGvHlGHq~LI~~A~~~g~-~~VvtF~~-P~~vl~~~~-~~~l~s~~~R~~lL~~lg~~v--D-~vv~~ 176 (380)
..+.|+++|+|||+|+|||.||++|.+.+. .++++|.+ |. +.... ...+.+.++|.+.|+.+...+ + .+-+.
T Consensus 18 ~~~~Vv~gGtFDgLH~GHq~LL~~A~~~a~~~vvIgft~~p~--l~~k~~~~~I~~~e~R~~~l~~fl~~~~p~~~~~i~ 95 (177)
T PLN02388 18 SYGAVVLGGTFDRLHDGHRLFLKAAAELARDRIVIGVCDGPM--LSKKQFAELIQPIEERMHNVEEYIKSIKPELVVQAE 95 (177)
T ss_pred cCCeEEEEecCCccCHHHHHHHHHHHHhhhcCEEEecCCChh--hcccCCCcccCCHHHHHHHHHHHHHHcCCCceEEEE
Confidence 356889999999999999999999998875 58899987 53 22222 234778899988877653111 1 12223
Q ss_pred eccccccccCCCCHHHHHHHHHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcC---cEEEEEcceeccCCCCCccc
Q 016934 177 EFQIQFSSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYG---MDACIINSVMDKHQDSRDID 253 (380)
Q Consensus 177 ~F~~~Fa~i~~ls~e~Fie~L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G---~~v~iV~~v~~~~~~~~~~~ 253 (380)
+.+..|-- + + ..-+++.|||.+...+|... +++++ .+.| +++.+|+.+..++
T Consensus 96 ~i~D~~Gp-----t------~-~~~~~d~LVVS~ET~~g~~~---IN~~R---~e~Gl~pL~i~~v~~v~~~~------- 150 (177)
T PLN02388 96 PIIDPYGP-----S------I-VDENLEAIVVSKETLPGGLS---VNKKR---AERGLSQLKIEVVDIVPEES------- 150 (177)
T ss_pred EecCCCCC-----c------c-cCCCCCEEEEcHhHhhhHHH---HHHHH---HHCCCCCeEEEEEEeEecCC-------
Confidence 33333320 0 1 12367999999999988543 33333 3444 5677777665331
Q ss_pred CCCCccCCccchHHHHHHHHc
Q 016934 254 CNDSKERGQVSSTRVRQALAM 274 (380)
Q Consensus 254 ~~~~~~~~~ISST~IR~~L~~ 274 (380)
++.+||||+||+++.+
T Consensus 151 -----~~~kiSST~iR~~~~~ 166 (177)
T PLN02388 151 -----TGNKLSSTTLRRLEAE 166 (177)
T ss_pred -----CCCccCHHHHHHHHHH
Confidence 2589999999999864
No 22
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=99.39 E-value=3.8e-12 Score=131.02 Aligned_cols=131 Identities=21% Similarity=0.253 Sum_probs=97.6
Q ss_pred CceEEEEeecCccCHHHHHHHHHHHHhCCC--EEEeecC-cccccccCCCCCCCChHHHHHHHHhcCCccCeEEEEeccc
Q 016934 104 AGGIVALGKFDALHIGHRELAIQASKIGAP--YLLSFIG-MAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQI 180 (380)
Q Consensus 104 ~~~vvtIG~FDGvHlGHq~LI~~A~~~g~~--~VvtF~~-P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD~vv~~~F~~ 180 (380)
...|++.|.||++|.||+++|++|++.+.. ++++||+ +.... ....|+++.++|.+.++.++ +||.++ +|+.
T Consensus 340 ~~iv~~~G~fD~~H~GH~~~l~~a~~~~~~l~v~v~~d~~~~~~k--~~~~pi~~~~~R~~~~~~~~-~vd~v~--~~~~ 414 (473)
T PRK11316 340 EKIVMTNGCFDILHAGHVSYLANARKLGDRLIVAVNSDASVKRLK--GEGRPVNPLEQRMAVLAALE-AVDWVV--PFEE 414 (473)
T ss_pred CeEEEEecccccCCHHHHHHHHHHHHhCCeeEEEEeCchhHHHhC--CCCCCCCCHHHHHHHHHhcC-cCCEEE--eCCC
Confidence 367899999999999999999999999864 4588887 53322 22357999999999999988 589874 5542
Q ss_pred cccccCCCCHHHHHHHHHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcceeccCCCCCcccCCCCccC
Q 016934 181 QFSSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKER 260 (380)
Q Consensus 181 ~Fa~i~~ls~e~Fie~L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~~~~~~~~~~ 260 (380)
.++++|++ +++++.+|.|.||+|... . ....+ +++|-++..++..
T Consensus 415 -------~~~~~~~~----~~~~d~vv~G~d~~~~~~-~-~~~~~----~~~~~~~~~~~~~------------------ 459 (473)
T PRK11316 415 -------DTPQRLIA----EILPDLLVKGGDYKPEEI-A-GSKEV----WANGGEVKVLNFE------------------ 459 (473)
T ss_pred -------CCHHHHHH----HhCCCEEEECCCCCCCcc-c-cHHHH----HHcCCEEEEEcCC------------------
Confidence 47888875 457899999999987632 1 12222 4567777777642
Q ss_pred CccchHHHHHHHHc
Q 016934 261 GQVSSTRVRQALAM 274 (380)
Q Consensus 261 ~~ISST~IR~~L~~ 274 (380)
..+|||.|++-|.+
T Consensus 460 ~~~st~~i~~ri~~ 473 (473)
T PRK11316 460 DGCSTTNIIKKIRQ 473 (473)
T ss_pred CCcCHHHHHHHHhC
Confidence 35999999998853
No 23
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]
Probab=99.33 E-value=2.1e-11 Score=107.84 Aligned_cols=134 Identities=25% Similarity=0.305 Sum_probs=97.2
Q ss_pred EEEEeecCccCHHHHHHHHHHHHhCCCEEEeecCcccccccCCCCCCCChHHHHHHHHhcCCccCeEEEEeccccccccC
Q 016934 107 IVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQIQFSSVR 186 (380)
Q Consensus 107 vvtIG~FDGvHlGHq~LI~~A~~~g~~~VvtF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD~vv~~~F~~~Fa~i~ 186 (380)
|+|-|.||-+|.||-+.|++|++.|...++.-.+-..+...+.++|+++.+||.+.++++. |||.++.-
T Consensus 4 V~~~GtFDilH~GHi~~L~~Ak~lGd~liVv~a~de~~~~~~k~~pi~~~~qR~evl~s~r-yVD~vi~~---------- 72 (140)
T COG0615 4 VWADGTFDILHPGHIEFLRQAKKLGDELIVVVARDETVIKRKKRKPIMPEEQRAEVLESLR-YVDEVILG---------- 72 (140)
T ss_pred EEEeeEEEEechhHHHHHHHHHHhCCeEEEEEeccHHHHHhcCCCCCCCHHHHHHHHHcCc-chheeeeC----------
Confidence 7899999999999999999999999553322222111222245678999999999999998 69988852
Q ss_pred CCCHHHH-HHHHHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcceeccCCCCCcccCCCCccCCccch
Q 016934 187 HLSPQQF-VEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSS 265 (380)
Q Consensus 187 ~ls~e~F-ie~L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~~~~~~~~~~~~ISS 265 (380)
.|.++ .+ .+++++++.++.|.|+.| +.+.|++.+.+.|..+.++...... ....+||
T Consensus 73 --~p~~~~~~-~i~~~k~Div~lG~D~~~------d~~~l~~~~~k~G~~~~v~R~~g~~-------------~~~~~st 130 (140)
T COG0615 73 --APWDIKFE-DIEEYKPDIVVLGDDQKF------DEDDLKYELVKRGLFVEVKRTEGVS-------------TCELIST 130 (140)
T ss_pred --CccccChH-HHHHhCCCEEEECCCCcC------ChHHHHHHHHHcCCeeEEEeccCcc-------------cCcccch
Confidence 12233 22 346789999999999974 6788888888889877665432111 1256899
Q ss_pred HHHHHHHH
Q 016934 266 TRVRQALA 273 (380)
Q Consensus 266 T~IR~~L~ 273 (380)
|.|.+.+.
T Consensus 131 ~~i~~~i~ 138 (140)
T COG0615 131 SDIIKRIL 138 (140)
T ss_pred HHHHHHHh
Confidence 99988774
No 24
>KOG3110 consensus Riboflavin kinase [Coenzyme transport and metabolism]
Probab=99.32 E-value=2.3e-12 Score=112.39 Aligned_cols=88 Identities=10% Similarity=0.009 Sum_probs=73.2
Q ss_pred hhcceeeeEEEEEeecccccccCCCcccCCCCCCCC-----CC--CCCCcEEEEEEEEc-Cccc----ceeeceEEeCCc
Q 016934 282 ELLGRQHRLILTVNDHDELISTSNKHRVSVPKSCLL-----NL--PPKEGFYGNSVLLF-GEEN----PVKCRICIDASH 349 (380)
Q Consensus 282 ~LLGrpy~i~G~Vv~G~~~~~~~~Gr~lGfPTANl~-----~l--lP~~GVYav~v~~~-g~~~----~iG~rpt~~~~~ 349 (380)
-|--.||...|.||+|-+|| +..||.||||+. .+ -.+.|||-.|..++ ++.+ +|||||.+++++
T Consensus 7 ~~~~~P~~~~g~VVrGFGRG----skeLGiPTAN~~~~~v~~l~~~l~~GvYfG~A~v~~~~v~kMvmSIGwNP~Y~N~~ 82 (153)
T KOG3110|consen 7 PMSPLPLFFGGEVVRGFGRG----SKELGIPTANFPENVVPKLPEDLPSGVYFGWAHVDKGDVFKMVMSIGWNPYYKNKK 82 (153)
T ss_pred cCCCCCEEecCeEEEecCCC----ccccCCccCCCCHHHHhcccccCCCceEEEeeeecCCCceeEEEEcccCcccCCcc
Confidence 34456999999999999873 347999999995 11 12579999999987 4433 689999999999
Q ss_pred eEEEEeeccCCCCCCCCCCceEEEEE
Q 016934 350 IHLEMDKVGFCNFDHSQDFKLLGIEF 375 (380)
Q Consensus 350 ~~vE~h~l~~~df~~~~yg~~l~vef 375 (380)
..+|+|++| ||..|.||+.|++-.
T Consensus 83 Kt~E~hlih--~f~~DFYge~l~~~I 106 (153)
T KOG3110|consen 83 KTMELHLIH--DFGEDFYGETLKVII 106 (153)
T ss_pred cceeeeeeh--hcccchhhheeeEEE
Confidence 999999999 999999999999875
No 25
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=99.30 E-value=2.7e-11 Score=108.28 Aligned_cols=132 Identities=16% Similarity=0.249 Sum_probs=90.9
Q ss_pred eEEEEeecCccCHHHHHHHHHHHHhC--CCEE--EeecCcccccccCCCCCCCChHHHHHHHHhcCCccCeEEEEecccc
Q 016934 106 GIVALGKFDALHIGHRELAIQASKIG--APYL--LSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQIQ 181 (380)
Q Consensus 106 ~vvtIG~FDGvHlGHq~LI~~A~~~g--~~~V--vtF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD~vv~~~F~~~ 181 (380)
-|++-|.||-+|.||..+|++|++.| ..++ |+.|. .+.... ..|+++.++|.++++++. +||.|++...
T Consensus 4 rV~~~G~FDl~H~GHi~~L~~A~~lg~~d~LiVgV~sD~--~~~~~k-~~pi~~~~eR~~~l~~~~-~Vd~Vi~~~~--- 76 (150)
T cd02174 4 RVYVDGCFDLFHYGHANALRQAKKLGPNDYLIVGVHSDE--EIHKHK-GPPVMTEEERYEAVRHCK-WVDEVVEGAP--- 76 (150)
T ss_pred EEEEeCccCCCCHHHHHHHHHHHHhCCCCEEEEEEecCH--HHhhcC-CCCcCCHHHHHHHHHhcC-CCCeEEECCC---
Confidence 47889999999999999999999998 6644 44432 111112 238999999999999986 6898775321
Q ss_pred ccccCCCCHHHHHHHHHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcceeccCCCCCcccCCCCccCC
Q 016934 182 FSSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERG 261 (380)
Q Consensus 182 Fa~i~~ls~e~Fie~L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~~~~~~~~~~~ 261 (380)
+ -...+|+ ++++++.++.|.||..+... .++.+..++.| .+..++.. .
T Consensus 77 ~-----~~~~~~i----~~~~~d~vv~G~d~~~~~~~----~~~~~~~~~~g-~~~~~~~~------------------~ 124 (150)
T cd02174 77 Y-----VTTPEFL----DKYKCDYVAHGDDIYLDADG----EDCYQEVKDAG-RFKEVKRT------------------E 124 (150)
T ss_pred C-----CChHHHH----HHhCCCEEEECCCCCCCCCc----hhHHHHHHhCC-EEEEeCCC------------------C
Confidence 0 1234454 56899999999999865432 23333344555 45555531 3
Q ss_pred ccchHHHHHHHHcCC
Q 016934 262 QVSSTRVRQALAMGD 276 (380)
Q Consensus 262 ~ISST~IR~~L~~Gd 276 (380)
.+|||.|++.|....
T Consensus 125 ~~Stt~ii~rI~~~~ 139 (150)
T cd02174 125 GVSTTDLIGRILLDY 139 (150)
T ss_pred CCCHHHHHHHHHHhH
Confidence 599999999997653
No 26
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT). CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=99.21 E-value=2.7e-10 Score=102.06 Aligned_cols=137 Identities=18% Similarity=0.203 Sum_probs=91.5
Q ss_pred ceEEEEeecCccCHHHHHHHHHHHHhCCCEEEeecCcccccc-cCCCCCCCChHHHHHHHHhcCCccCeEEEEecccccc
Q 016934 105 GGIVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFG-WEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQIQFS 183 (380)
Q Consensus 105 ~~vvtIG~FDGvHlGHq~LI~~A~~~g~~~VvtF~~P~~vl~-~~~~~~l~s~~~R~~lL~~lg~~vD~vv~~~F~~~Fa 183 (380)
..|++-|.||-+|.||..+|++|++.|..+++-......+.. ..+..|+++.++|.+++.++. +||.|++..+.
T Consensus 3 ~iv~~~G~FD~~H~GHi~~L~~A~~lgd~liVgV~~D~~~~~~K~~~~pi~~~~eR~~~v~~~~-~Vd~V~v~~~~---- 77 (152)
T cd02173 3 KVVYVDGAFDLFHIGHIEFLEKARELGDYLIVGVHDDQTVNEYKGSNYPIMNLHERVLSVLACR-YVDEVVIGAPY---- 77 (152)
T ss_pred eEEEEcCcccCCCHHHHHHHHHHHHcCCEEEEEEeCcHHHHhhcCCCCCCCCHHHHHHHHHhcC-CCCEEEECCCC----
Confidence 467888999999999999999999998775543322111111 123458999999999999987 59988763321
Q ss_pred ccCCCCHHHHHHHHHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcceeccCCCCCcccCCCCccCCcc
Q 016934 184 SVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQV 263 (380)
Q Consensus 184 ~i~~ls~e~Fie~L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~~~~~~~~~~~~I 263 (380)
-.+.+| +++++++.++.|.|+..-....+ +.+....++.|.-. .++.. ..+
T Consensus 78 ----~~~~~~----~~~~~~d~vv~G~d~~~~~~~~~--~~~~~~~~~~G~~~-~v~~~------------------~~~ 128 (152)
T cd02173 78 ----VITKEL----IEHFKIDVVVHGKTEETPDSLDG--EDPYAVPKEMGIFK-EIDSG------------------SDL 128 (152)
T ss_pred ----cchHHH----HHHhCCCEEEECCCCccccccCc--hHHHHHHHhCCeEE-EecCC------------------CCC
Confidence 123444 45789999999999964211112 34445555666543 44421 359
Q ss_pred chHHHHHHHHcC
Q 016934 264 SSTRVRQALAMG 275 (380)
Q Consensus 264 SST~IR~~L~~G 275 (380)
|||.|.+-|..-
T Consensus 129 Sts~Ii~rI~~~ 140 (152)
T cd02173 129 TTRDIVNRIIKN 140 (152)
T ss_pred CHHHHHHHHHHh
Confidence 999999888643
No 27
>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6.2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase. It converts the inactive thiol form of the enzyme to the active form. In Clostridium sphenoides, citrate lyase ligase actively degrades citrate. In Clostridium sporosphaeroides and Lactococcus lactis, however, the enzyme is under stringent regulatory control. The enzyme's activity in anaerobic bacteria is modulated by phosphorylation and dephosphorylation []. The proteins in this entry represent the C-terminal domain of citrate lyase ligase.; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity
Probab=99.18 E-value=1e-10 Score=107.01 Aligned_cols=151 Identities=22% Similarity=0.266 Sum_probs=114.3
Q ss_pred ecCccCHHHHHHHHHHHHhCCCEEEeecCcccccccCCCCCCCChHHHHHHHHhcCCccCeEEEEe----------cccc
Q 016934 112 KFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVE----------FQIQ 181 (380)
Q Consensus 112 ~FDGvHlGHq~LI~~A~~~g~~~VvtF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD~vv~~~----------F~~~ 181 (380)
|=..+.+|||.|+++|.+.+.. |..| |. +.+..+++..+|.++++.--.++++|.+++ |-.-
T Consensus 7 NaNPFT~GH~yLiE~Aa~~~d~-l~vF-----VV--~eD~S~Fpf~~R~~LVk~G~~~L~NV~V~~~g~YiIS~aTFPsY 78 (182)
T PF08218_consen 7 NANPFTLGHRYLIEQAAKECDW-LHVF-----VV--SEDRSLFPFADRYELVKEGTADLPNVTVHPGGDYIISSATFPSY 78 (182)
T ss_pred cCCCCccHHHHHHHHHHHhCCE-EEEE-----EE--ccccCcCCHHHHHHHHHHHhCcCCCEEEEcCCCeeeecccChhh
Confidence 5578899999999999887653 3223 22 223457899999999887544577777654 2111
Q ss_pred c----cc----cCCCCHHHHHHHHHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcceeccCCCCCccc
Q 016934 182 F----SS----VRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDID 253 (380)
Q Consensus 182 F----a~----i~~ls~e~Fie~L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~~~ 253 (380)
| +. -..+++.-|.+.+...|++....||+.-..--.+..|- .++++...+|+++.+|++...+
T Consensus 79 FlK~~~~~~~~~~~lD~~iF~~~IAp~L~It~RfVG~EP~~~vT~~YN~-~M~~~Lp~~gi~v~ei~R~~~~-------- 149 (182)
T PF08218_consen 79 FLKDEDDVIKAQAELDATIFKKYIAPALGITKRFVGEEPFSPVTRIYNE-AMKEILPPYGIEVVEIPRKEIN-------- 149 (182)
T ss_pred hccchhHHHHHHHHHHHHHHHHHhhHhcCcccceeCCCCCCHHHHHHHH-HHHHhccccCCEEEEEecccCC--------
Confidence 1 11 14577778888888999999999999987766666664 4566778899999999997655
Q ss_pred CCCCccCCccchHHHHHHHHcCCchhhhhhcc
Q 016934 254 CNDSKERGQVSSTRVRQALAMGDMKYVSELLG 285 (380)
Q Consensus 254 ~~~~~~~~~ISST~IR~~L~~GdI~~An~LLG 285 (380)
+..||.|++|++|++||+++..+|+-
T Consensus 150 ------g~~ISAS~VR~~l~~~~~~~i~~lVP 175 (182)
T PF08218_consen 150 ------GEPISASRVRKLLKEGDFEEIKKLVP 175 (182)
T ss_pred ------CcEEcHHHHHHHHHcCCHHHHHHhCC
Confidence 48999999999999999999998874
No 28
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes. The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.
Probab=99.16 E-value=1.9e-10 Score=102.21 Aligned_cols=131 Identities=19% Similarity=0.220 Sum_probs=80.9
Q ss_pred EEEEeecCccCHHHHHHHHHHHHhC-CC--EEEeecCcccccccCC-CCCCCChHHHHHHHHhcCCcc--C-eEEEEecc
Q 016934 107 IVALGKFDALHIGHRELAIQASKIG-AP--YLLSFIGMAEVFGWEP-RAPIVAKCDRKRVLSSWAPYC--G-NVAPVEFQ 179 (380)
Q Consensus 107 vvtIG~FDGvHlGHq~LI~~A~~~g-~~--~VvtF~~P~~vl~~~~-~~~l~s~~~R~~lL~~lg~~v--D-~vv~~~F~ 179 (380)
|+.-|+||++|.||+.|+++|.+.+ .. +++|++++ +.... ...+.+.++|.++++.+-..+ + .+.+.+.+
T Consensus 2 v~~GGtFD~lH~GH~~Ll~~a~~~~~d~v~vgvt~d~~---~~~k~~~~~i~s~e~R~~~l~~~l~~~~~~~~~~i~~i~ 78 (143)
T cd02164 2 VAVGGTFDRLHDGHKILLSVAFLLAGEKLIIGVTSDEL---LKNKSLKELIEPYEERIANLHEFLVDLKPTLKYEIVPID 78 (143)
T ss_pred EEEcccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCchh---cccCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEcc
Confidence 5778999999999999999999876 33 34788762 11111 224678999998776642111 1 22233433
Q ss_pred ccccccCCCCHHHHHHHHHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcC---cEEEEEcceeccCCCCCcccCCC
Q 016934 180 IQFSSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYG---MDACIINSVMDKHQDSRDIDCND 256 (380)
Q Consensus 180 ~~Fa~i~~ls~e~Fie~L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G---~~v~iV~~v~~~~~~~~~~~~~~ 256 (380)
..|- -+. ..-.++.|||......|. ..+.+.=++.| .++++|+-+..+
T Consensus 79 d~~G----pt~--------~~~~~d~lVVS~ET~~~~------~~iN~~R~~~gl~pl~i~~v~~v~~~----------- 129 (143)
T cd02164 79 DPYG----PTG--------TDPDLEAIVVSPETYPGA------LKINRKREENGLSPLEIVVVPLVKAD----------- 129 (143)
T ss_pred CCCC----Ccc--------cCCCCCEEEEcHHHhhhH------HHHHHHHHHCCCCceeEEEEEeeccC-----------
Confidence 3332 110 012468899999988774 33333333555 556777766431
Q ss_pred CccCCccchHHHHH
Q 016934 257 SKERGQVSSTRVRQ 270 (380)
Q Consensus 257 ~~~~~~ISST~IR~ 270 (380)
.++.+||||+||+
T Consensus 130 -~~~~kiSST~iR~ 142 (143)
T cd02164 130 -EDGEKISSTRIRR 142 (143)
T ss_pred -CCCCeecchhhhC
Confidence 1358999999996
No 29
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=99.14 E-value=8.5e-10 Score=102.38 Aligned_cols=162 Identities=14% Similarity=0.089 Sum_probs=93.9
Q ss_pred ceEEEEeecCccCHHHHHHHHHHHHh-CCCEEEeecC-cccccccCCCCCCCChHHHHHHHHhcCCccCeEEEEeccccc
Q 016934 105 GGIVALGKFDALHIGHRELAIQASKI-GAPYLLSFIG-MAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQIQF 182 (380)
Q Consensus 105 ~~vvtIG~FDGvHlGHq~LI~~A~~~-g~~~VvtF~~-P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD~vv~~~F~~~F 182 (380)
..++.-|+||++|.||+.|+++|.+. +... +.|.| |...+ .+...+++.++|.++++..-.+.+.+.+.+++.+-
T Consensus 5 ~i~i~gGsFdP~H~GH~~l~~~a~~~~~~d~-v~~~p~~~~~~--k~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~~ 81 (203)
T PRK00071 5 RIGLFGGTFDPPHYGHLAIAEEAAERLGLDE-VWFLPNPGPPH--KPQKPLAPLEHRLAMLELAIADNPRFSVSDIELER 81 (203)
T ss_pred EEEEEeeCCCccCHHHHHHHHHHHHHcCCCE-EEEEeCCCCCC--CCCCCCCCHHHHHHHHHHHhcCCCceEEeHHHHhC
Confidence 35677899999999999999999875 3332 22332 22111 11224778899999988764445666666665432
Q ss_pred cccCCCCHHHHHHHHHHhh-C-ccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcceeccCCCCC----------
Q 016934 183 SSVRHLSPQQFVEKLSREL-G-VRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSR---------- 250 (380)
Q Consensus 183 a~i~~ls~e~Fie~L~~~L-~-vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~~~---------- 250 (380)
.. ..-+. +-++.+.+.+ + --.+++|.|--.--..+-+++.|-+.+. +.++++-........
T Consensus 82 ~~-~syT~-~tl~~l~~~~p~~~~~fiiG~D~l~~l~~W~~~~~i~~~~~-----~iv~~R~g~~~~~~~~~~~~~~~~~ 154 (203)
T PRK00071 82 PG-PSYTI-DTLRELRARYPDVELVFIIGADALAQLPRWKRWEEILDLVH-----FVVVPRPGYPLEALALPALQQLLEA 154 (203)
T ss_pred CC-CCCHH-HHHHHHHHHCCCCcEEEEEcHHHhhhcccccCHHHHHHhCc-----EEEEeCCCCCccccchhHHHHhhcc
Confidence 21 01122 3345454444 2 2379999997776677777776665433 555554221100000
Q ss_pred cccC-CCCccCCccchHHHHHHHHcCC
Q 016934 251 DIDC-NDSKERGQVSSTRVRQALAMGD 276 (380)
Q Consensus 251 ~~~~-~~~~~~~~ISST~IR~~L~~Gd 276 (380)
...- ........||||.||+.|++|+
T Consensus 155 ~~~i~~~~~~~~~ISST~IR~~l~~g~ 181 (203)
T PRK00071 155 AGAITLLDVPLLAISSTAIRERIKEGR 181 (203)
T ss_pred CCCEEEEeCCCCccCHHHHHHHHHcCC
Confidence 0000 0011124699999999999885
No 30
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=99.11 E-value=5.6e-10 Score=111.60 Aligned_cols=160 Identities=18% Similarity=0.132 Sum_probs=117.0
Q ss_pred CceEEEEeecCccCHHHHHHHHHHHHhCCCEEEeecCcccccccCCCCCCCChHHHHHHHHhcCCccCeEEEEecccc--
Q 016934 104 AGGIVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQIQ-- 181 (380)
Q Consensus 104 ~~~vvtIG~FDGvHlGHq~LI~~A~~~g~~~VvtF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD~vv~~~F~~~-- 181 (380)
++.++..|+||.+|+||+.|+++|.+....+.|-+. .....+++.++|.++++..-.+.+.+.++++..-
T Consensus 139 ~~i~~~~g~fdP~t~GH~~li~~A~~~~d~~~v~v~--------~~~~~~f~~~~R~~~v~~~~~~~~nv~v~~~~~~~i 210 (332)
T TIGR00124 139 NKIGSIVMNANPFTNGHRYLIEQAARQCDWLHLFVV--------KEDASLFSYDERFALVKQGIQDLSNVTVHNGSAYII 210 (332)
T ss_pred CcEEEEEeCcCCCchHHHHHHHHHHHHCCEEEEEEE--------eCCCCCCCHHHHHHHHHHHhcCCCCEEEEecCCcee
Confidence 356788999999999999999999988665433221 1234588999999998876545667777665321
Q ss_pred --------c----cc----cCCCCHHHHHHHHHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHH---hhcCcEEEEEcce
Q 016934 182 --------F----SS----VRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLC---EEYGMDACIINSV 242 (380)
Q Consensus 182 --------F----a~----i~~ls~e~Fie~L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~---~~~G~~v~iV~~v 242 (380)
| +. -+.+++.-|-+++...|++....||+.-..--.+..|-.+...+. ...++++.+|++.
T Consensus 211 s~atfp~yflk~~~~~~~~~~~ld~~~f~~~ia~~l~i~~r~vg~ep~~~~t~~yn~~m~~~~~~~~~~~~I~~~~I~R~ 290 (332)
T TIGR00124 211 SRATFPAYFLKEQDVADDCYTEIDLKLFRYKIAPALGITHRFVGTEPLCPVTALYNQKMKYWLEEPNDAPPIEVVEIQRK 290 (332)
T ss_pred ccccchhhhcCChhHHHHHHHHHHHHHHHHhchHhhCCccceeCCCCCCHhHHHHHHHHHHhhhccCCCCCcEEEEEeee
Confidence 1 00 145788888888889999999999999877666666655443222 2357999999875
Q ss_pred eccCCCCCcccCCCCccCCccchHHHHHHHHcCCchhhhhhcc
Q 016934 243 MDKHQDSRDIDCNDSKERGQVSSTRVRQALAMGDMKYVSELLG 285 (380)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~ISST~IR~~L~~GdI~~An~LLG 285 (380)
..+ +..+|+|.||++|++|+++.+++++-
T Consensus 291 ~~~--------------~~~~SASaIR~~L~~~~~~~i~~~VP 319 (332)
T TIGR00124 291 LAA--------------GGPISASTVRELLAKGDWAAWAKLVP 319 (332)
T ss_pred cCC--------------CCeeCHHHHHHHHHcCCHHHHHHhCC
Confidence 432 36799999999999999888877654
No 31
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=99.10 E-value=1.5e-09 Score=110.88 Aligned_cols=164 Identities=18% Similarity=0.121 Sum_probs=103.0
Q ss_pred CceEEEEeecCccCHHHHHHHHHHHHhCCC--E-EEeecC-cccccccCCCCCCCChHHHHHHHHhcCCccCeEEEEecc
Q 016934 104 AGGIVALGKFDALHIGHRELAIQASKIGAP--Y-LLSFIG-MAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQ 179 (380)
Q Consensus 104 ~~~vvtIG~FDGvHlGHq~LI~~A~~~g~~--~-VvtF~~-P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD~vv~~~F~ 179 (380)
...++++|.||++|+||+.||++|.+.... + |.++.+ |..++...+...+++.++|.++|+..-.+.+.+.+..|.
T Consensus 52 ~~~~v~~G~FdP~H~GH~~lI~~A~~~~d~l~v~v~~~~~~~~~~~~~~~~~~~~s~~~R~~~l~~~~~~~~~v~v~~~~ 131 (399)
T PRK08099 52 KKIGVVFGKFYPLHTGHIYLIQRACSQVDELHIIICYDDERDRKLFEDSAMSQQPTVSDRLRWLLQTFKYQKNIKIHAFN 131 (399)
T ss_pred CcEEEEEEecCCCCHHHHHHHHHHHHHCCeeEEEEEccCCcchhhcccccccCCCCHHHHHHHHHHHhCCCCCEEEEecC
Confidence 357899999999999999999999988654 3 345555 566665444456788999999988865456677777765
Q ss_pred c-cccccCCCC--HHHHHHH---HHHh--hCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcceeccCCCCCc
Q 016934 180 I-QFSSVRHLS--PQQFVEK---LSRE--LGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRD 251 (380)
Q Consensus 180 ~-~Fa~i~~ls--~e~Fie~---L~~~--L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~ 251 (380)
. +.. ..+ -+...+. ++.. .+++.+++|+++ |.+.+ .+.+|+++..|++...
T Consensus 132 ~~~~~---~~~~~~~~w~~~v~~~v~~~~~~~~~vf~~~~~--------d~~~~---~~~~~~~~~~vd~~r~------- 190 (399)
T PRK08099 132 EEGME---PYPHGWDVWSNGIKAFMAEKGIQPDVIYTSEEQ--------DAPQY---EEHLGIETVLVDPKRT------- 190 (399)
T ss_pred CCCCC---CCCccHHHHHHHHHHHHHhcCCCCCEEEEeCCC--------ChHHH---HHhcCCceeeeccccc-------
Confidence 5 322 222 1123333 2322 257889999886 22222 2355888877764221
Q ss_pred ccCCCCccCCccchHHHHHHHHcCCchhhhhhcceeeeEEEEEeecc
Q 016934 252 IDCNDSKERGQVSSTRVRQALAMGDMKYVSELLGRQHRLILTVNDHD 298 (380)
Q Consensus 252 ~~~~~~~~~~~ISST~IR~~L~~GdI~~An~LLGrpy~i~G~Vv~G~ 298 (380)
...||+|.||+... +..+...+- =|+|.+.-.|+.|.
T Consensus 191 --------~~~iSaT~IR~~p~-~~w~~i~~~-vr~~~~~~IvI~G~ 227 (399)
T PRK08099 191 --------FMNISGTQIRENPF-RYWEYIPTE-VRPFFVRTVAILGG 227 (399)
T ss_pred --------cCCcCHHHHhhCHH-HHHHhcCHH-HhhCCCcEEEEEcC
Confidence 14699999999754 222222221 14555555666653
No 32
>PRK00777 phosphopantetheine adenylyltransferase; Provisional
Probab=98.98 E-value=6.3e-09 Score=93.37 Aligned_cols=133 Identities=21% Similarity=0.222 Sum_probs=84.6
Q ss_pred eEEEEeecCccCHHHHHHHHHHHHhCCCEE--EeecCcccccccCCCCCCCChHHHHHHHHhcCCc---cCeEEEEeccc
Q 016934 106 GIVALGKFDALHIGHRELAIQASKIGAPYL--LSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPY---CGNVAPVEFQI 180 (380)
Q Consensus 106 ~vvtIG~FDGvHlGHq~LI~~A~~~g~~~V--vtF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~---vD~vv~~~F~~ 180 (380)
.|++.|.||-+|.||..++++|.+.+..++ ++-+. ...+....++.+.++|.+++..+-.. .+.+.+.+.+.
T Consensus 3 ~v~~gGtFDplH~GH~~ll~~A~~~~d~livgi~~d~---~~~~~K~~~i~~~e~R~~~v~~~~~~~~~~~~~~i~~i~d 79 (153)
T PRK00777 3 KVAVGGTFDPLHDGHRALLRKAFELGKRVTIGLTSDE---FAKSYKKHKVRPYEVRLKNLKKFLKAVEYDREYEIVKIDD 79 (153)
T ss_pred EEEEecccCCCCHHHHHHHHHHHHcCCEEEEEEcCCc---cccccCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEeccc
Confidence 478999999999999999999999876533 44442 11111124688999999988764110 11222222221
Q ss_pred cccccCCCCHHHHHHHHHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcE---EEEEcceeccCCCCCcccCCCC
Q 016934 181 QFSSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMD---ACIINSVMDKHQDSRDIDCNDS 257 (380)
Q Consensus 181 ~Fa~i~~ls~e~Fie~L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~---v~iV~~v~~~~~~~~~~~~~~~ 257 (380)
.| --.. ..+++.||+|.|=.. +...+.+.-++.|+. +.+++.+..+
T Consensus 80 ~~-----------gp~~--~~~~d~ivvs~et~~------~~~~in~~r~~~gl~~l~i~~v~~~~~~------------ 128 (153)
T PRK00777 80 PY-----------GPAL--EDDFDAIVVSPETYP------GALKINEIRRERGLKPLEIVVIDFVLAE------------ 128 (153)
T ss_pred cC-----------CCcc--ccCCCEEEEChhhhh------hHHHHHHHHHHCCCCceEEEEEeeeecC------------
Confidence 11 1111 125899999998543 356677777777754 4777765533
Q ss_pred ccCCccchHHHHHHHH
Q 016934 258 KERGQVSSTRVRQALA 273 (380)
Q Consensus 258 ~~~~~ISST~IR~~L~ 273 (380)
++.++|||+||+-+.
T Consensus 129 -~~~~~SSt~Ir~~~~ 143 (153)
T PRK00777 129 -DGKPISSTRIRRGEI 143 (153)
T ss_pred -CCCeeeHHHHHHhhh
Confidence 247899999997654
No 33
>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=98.95 E-value=2e-08 Score=90.18 Aligned_cols=131 Identities=19% Similarity=0.282 Sum_probs=83.0
Q ss_pred eEEEEeecCccCHHHHHHHHHHHHhCCCEEEeec-CcccccccCCCCCCCChHHHHHHHHhcCCccCeEEEEeccccccc
Q 016934 106 GIVALGKFDALHIGHRELAIQASKIGAPYLLSFI-GMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQIQFSS 184 (380)
Q Consensus 106 ~vvtIG~FDGvHlGHq~LI~~A~~~g~~~VvtF~-~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD~vv~~~F~~~Fa~ 184 (380)
.++..|.||.+|.||..++++|++.+..+++.-. +|. ..++++.++|.++++..-.+.+.+.+.+++
T Consensus 3 igi~gGsFdP~H~GHl~~~~~a~~~~d~v~v~~~~~~~-------k~~~~~~~~R~~ml~~a~~~~~~v~v~~~e----- 70 (159)
T PRK00168 3 IAIYPGSFDPITNGHLDIIERASRLFDEVIVAVAINPS-------KKPLFSLEERVELIREATAHLPNVEVVSFD----- 70 (159)
T ss_pred EEEEeeecCCCCHHHHHHHHHHHHHCCEEEEEECCCCC-------CCCCCCHHHHHHHHHHHHcCCCCEEEecCC-----
Confidence 5688899999999999999999998765443211 121 236789999999988832246776665543
Q ss_pred cCCCCHHHHHHHHHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHh--hcC---cEEEEEcceeccCCCCCcccCCCCcc
Q 016934 185 VRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCE--EYG---MDACIINSVMDKHQDSRDIDCNDSKE 259 (380)
Q Consensus 185 i~~ls~e~Fie~L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~--~~G---~~v~iV~~v~~~~~~~~~~~~~~~~~ 259 (380)
.. ..+ .++.++.+.++.|-|- +-|.+.+.+++. +.+ ++...+.. .. +
T Consensus 71 --~~-t~~----~~~~~~~~~~~~gl~~------w~d~e~~~~~~~~~r~~~~~~~~i~~~~--~~-------------~ 122 (159)
T PRK00168 71 --GL-LVD----FAREVGATVIVRGLRA------VSDFEYEFQMAGMNRKLAPEIETVFLMP--SP-------------E 122 (159)
T ss_pred --cc-HHH----HHHHcCCCEEEecCcc------hhhHHHHHHHHHhCCCCCCCCcEEEEeC--CC-------------C
Confidence 12 233 3456788888888542 336666655552 112 22111110 00 0
Q ss_pred CCccchHHHHHHHHcCC
Q 016934 260 RGQVSSTRVRQALAMGD 276 (380)
Q Consensus 260 ~~~ISST~IR~~L~~Gd 276 (380)
-..||||.||+.++.|.
T Consensus 123 ~~~ISST~IR~~i~~g~ 139 (159)
T PRK00168 123 YSFISSSLVKEVARLGG 139 (159)
T ss_pred cceecHHHHHHHHHcCC
Confidence 13599999999999885
No 34
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase. In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.
Probab=98.93 E-value=4.3e-08 Score=89.17 Aligned_cols=130 Identities=14% Similarity=0.171 Sum_probs=79.2
Q ss_pred EEEEeecCccCHHHHHHHHHHHHhCCCEEE--eecCcccccccCCCCCCCChHHHHHHHHhcCCccC--eEEEEeccccc
Q 016934 107 IVALGKFDALHIGHRELAIQASKIGAPYLL--SFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCG--NVAPVEFQIQF 182 (380)
Q Consensus 107 vvtIG~FDGvHlGHq~LI~~A~~~g~~~Vv--tF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD--~vv~~~F~~~F 182 (380)
++.+|.||.+|+||..++++|.+....+++ .-..+ .... .+.++..+|.++++..-.+.+ .+.++|.. +
T Consensus 2 gl~~G~FdP~H~GHl~ii~~a~~~~D~lii~i~s~~~----~~k~-~~p~~~~eR~~mi~~al~~~~~~~~~~vP~~-d- 74 (165)
T TIGR01527 2 GFYIGRFQPFHLGHLEVIKKIAEEVDELIIGIGSAQE----SHTL-ENPFTAGERILMITQSLKEVGDLTYYIIPIE-D- 74 (165)
T ss_pred eEEEeccCCCCHHHHHHHHHHHHHCCEEEEEEcCCCC----CCCC-CCCCCHHHHHHHHHHHHhcCCCceEEEEecC-C-
Confidence 478999999999999999999988655443 22111 0111 234566899999844322232 23344432 1
Q ss_pred cccCCCCHHHHHHHHHHhh--CccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcceeccCCCCCcccCCCCccC
Q 016934 183 SSVRHLSPQQFVEKLSREL--GVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKER 260 (380)
Q Consensus 183 a~i~~ls~e~Fie~L~~~L--~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~~~~~~~~~~ 260 (380)
.+-.+-....++.+ .++.++.|+. .-+++.++.|++|...+... .
T Consensus 75 -----~~~~~~w~~~v~~~~p~~D~vf~~~~------------~~~~~f~e~g~~v~~~p~~~----------------r 121 (165)
T TIGR01527 75 -----IERNSIWVSYVESMTPPFDVVYSNNP------------LVRRLFKEAGYEVKRPPMFN----------------R 121 (165)
T ss_pred -----ccHHHHHHHHHHHhCCCCCEEEECCH------------HHHHHHHHcCCEEEECCCcC----------------C
Confidence 11112122222222 6788888842 22566678899988775432 2
Q ss_pred CccchHHHHHHHHcCC
Q 016934 261 GQVSSTRVRQALAMGD 276 (380)
Q Consensus 261 ~~ISST~IR~~L~~Gd 276 (380)
..+|||.||++|.+|+
T Consensus 122 ~~~S~T~IR~~i~~~~ 137 (165)
T TIGR01527 122 KEYSGTEIRRRMLNGE 137 (165)
T ss_pred CcccHHHHHHHHHcCC
Confidence 4799999999999875
No 35
>cd02165 NMNAT Nicotinamide/nicotinate mononucleotide adenylyltransferase. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.
Probab=98.90 E-value=2.5e-08 Score=91.68 Aligned_cols=156 Identities=18% Similarity=0.072 Sum_probs=93.1
Q ss_pred EEEEeecCccCHHHHHHHHHHHHhC--CCEE--EeecCcccccccCCCCCCCChHHHHHHHHhcCCccCeEEEEeccccc
Q 016934 107 IVALGKFDALHIGHRELAIQASKIG--APYL--LSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQIQF 182 (380)
Q Consensus 107 vvtIG~FDGvHlGHq~LI~~A~~~g--~~~V--vtF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD~vv~~~F~~~F 182 (380)
++..|.||.+|.||.++++.|.+.. ..++ ++..+|.+ .....+.++|.++++..-.....+.+.++..+.
T Consensus 2 ~i~gGsFdP~H~GH~~~~~~a~~~~~~d~v~~~~~~~~~~k------~~~~~~~~~R~~m~~~~~~~~~~i~v~~~e~~~ 75 (192)
T cd02165 2 ALFGGSFDPPHLGHLAIAEEALEELGLDRVLLLPSANPPHK------PPKPASFEHRLEMLKLAIEDNPKFEVSDIEIKR 75 (192)
T ss_pred eEEeeCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCCCC------CCCCCCHHHHHHHHHHHHcCCCCEEEeHHHHhC
Confidence 5778999999999999999998875 3332 22222211 135678899999988764345566666665432
Q ss_pred cccCCCCHHHHHHHHHHhhC--ccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcceeccCCC-CCcc------c
Q 016934 183 SSVRHLSPQQFVEKLSRELG--VRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQD-SRDI------D 253 (380)
Q Consensus 183 a~i~~ls~e~Fie~L~~~L~--vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~-~~~~------~ 253 (380)
.. ..-.-+-++.+.+.+. --.+++|.|-----..+.+.+.|.+.+ .+.++++....... .... .
T Consensus 76 ~~--~~~t~~tl~~l~~~~p~~~~~~liG~D~l~~~~~W~~~~~i~~~~-----~~iv~~R~g~~~~~~~~~~~~~~~~~ 148 (192)
T cd02165 76 DG--PSYTIDTLEELRERYPNAELYFIIGSDNLIRLPKWYDWEELLSLV-----HLVVAPRPGYPIEDASLEKLLLPGGR 148 (192)
T ss_pred CC--CCCHHHHHHHHHHhccCCCEEEEEcHHHhhhcccccCHHHHHHhC-----cEEEEeCCCCCcccchhhhhccCCCc
Confidence 21 1122344565655542 248999999776666777787665543 24555543211000 0000 0
Q ss_pred C-CCCccCCccchHHHHHHHHcC
Q 016934 254 C-NDSKERGQVSSTRVRQALAMG 275 (380)
Q Consensus 254 ~-~~~~~~~~ISST~IR~~L~~G 275 (380)
- ........||||.||+.++.|
T Consensus 149 ~~~~~~~~~~iSST~IR~~~~~g 171 (192)
T cd02165 149 IILLDNPLLNISSTEIRERLKNG 171 (192)
T ss_pred EEEecCCccccCHHHHHHHHHcC
Confidence 0 001122469999999999988
No 36
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=98.86 E-value=2.8e-08 Score=101.96 Aligned_cols=133 Identities=21% Similarity=0.278 Sum_probs=93.1
Q ss_pred ceEEEEeecCccCHHHHHHHHHHHHhCCCEE--EeecCcccccccCCCCCCCChHHHHHHHHhcCCccCeEEEE-ecccc
Q 016934 105 GGIVALGKFDALHIGHRELAIQASKIGAPYL--LSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPV-EFQIQ 181 (380)
Q Consensus 105 ~~vvtIG~FDGvHlGHq~LI~~A~~~g~~~V--vtF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD~vv~~-~F~~~ 181 (380)
.-|++-|.||-+|.||..+|++|++.|..++ |+-|. .+.. ...+|+++.++|.++++++. +||.+++- |+.
T Consensus 54 ~rV~~~G~FDllH~GH~~~L~qAk~lGd~LIVGV~SDe--~i~~-~Kg~PV~~~eER~~~v~alk-~VD~Vv~~apy~-- 127 (418)
T PLN02406 54 VRVYMDGCFDMMHYGHANALRQARALGDELVVGVVSDE--EIIA-NKGPPVTPMHERMIMVSGVK-WVDEVIPDAPYA-- 127 (418)
T ss_pred eEEEEcCeeCCCCHHHHHHHHHHHHhCCEEEEEEecCh--hhhc-cCCCCcCCHHHHHHHHHhcC-CCceEEeCCccc--
Confidence 4678889999999999999999999998644 55443 1211 22358999999999999986 69987762 221
Q ss_pred ccccCCCCHHHHHHHHHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcceeccCCCCCcccCCCCccCC
Q 016934 182 FSSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERG 261 (380)
Q Consensus 182 Fa~i~~ls~e~Fie~L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~~~~~~~~~~~ 261 (380)
..++|++.++++++++.+|.|.|+....++. |.. ...+ .+-++..++.. +
T Consensus 128 -------~~~d~~~~li~~~~~D~vVhGdD~~~~~~g~-d~y---~~~k-~~Gr~~~i~rt------------------~ 177 (418)
T PLN02406 128 -------ITEEFMNKLFNEYNIDYIIHGDDPCLLPDGT-DAY---ALAK-KAGRYKQIKRT------------------E 177 (418)
T ss_pred -------cchHHHHHHHHHhCCCEEEECCCccccCCch-HHH---HHHH-hCCEEEEEecC------------------C
Confidence 2257887788999999999999997533221 222 2222 23345556541 3
Q ss_pred ccchHHHHHHHH
Q 016934 262 QVSSTRVRQALA 273 (380)
Q Consensus 262 ~ISST~IR~~L~ 273 (380)
-+|||.|-..|.
T Consensus 178 GvSTTdIv~Ril 189 (418)
T PLN02406 178 GVSSTDIVGRML 189 (418)
T ss_pred CCCHHHHHHHHH
Confidence 489999887765
No 37
>cd02163 PPAT Phosphopantetheine adenylyltransferase. Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli.
Probab=98.85 E-value=7.3e-08 Score=86.09 Aligned_cols=132 Identities=18% Similarity=0.227 Sum_probs=78.0
Q ss_pred EEEEeecCccCHHHHHHHHHHHHhCCCEEE-eecCcccccccCCCCCCCChHHHHHHHHhcCCccCeEEEEecccccccc
Q 016934 107 IVALGKFDALHIGHRELAIQASKIGAPYLL-SFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQIQFSSV 185 (380)
Q Consensus 107 vvtIG~FDGvHlGHq~LI~~A~~~g~~~Vv-tF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD~vv~~~F~~~Fa~i 185 (380)
++..|.||.+|.||..++++|.+....+++ ...+|. ..++.+..+|.++++..-.+.+.+.+.++.
T Consensus 2 ~i~gGsFdP~H~GHl~l~~~a~~~~d~v~v~~~~~~~-------k~~~~~~~~R~~ml~~a~~~~~~~~v~~~e------ 68 (153)
T cd02163 2 AVYPGSFDPITNGHLDIIERASKLFDEVIVAVAVNPS-------KKPLFSLEERVELIREATKHLPNVEVDGFD------ 68 (153)
T ss_pred EEEEeccCCCCHHHHHHHHHHHHHCCEEEEEEcCCCC-------CCCCCCHHHHHHHHHHHHcCCCCEEecCCc------
Confidence 477899999999999999999988655432 111121 235778899999988743345665554432
Q ss_pred CCCCHHHHHHHHHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHh--hcCc-EEEEEcceeccCCCCCcccCCCCccCCc
Q 016934 186 RHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCE--EYGM-DACIINSVMDKHQDSRDIDCNDSKERGQ 262 (380)
Q Consensus 186 ~~ls~e~Fie~L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~--~~G~-~v~iV~~v~~~~~~~~~~~~~~~~~~~~ 262 (380)
.+....++.++.+.++.|.|- +-|.+.+.+++. +-+- +...+-.. .. ..-..
T Consensus 69 ------s~t~~~l~~l~~~~~i~G~d~------~~~~e~~~~~~~~~r~~~~~~~~i~~~--~~-----------~~~~~ 123 (153)
T cd02163 69 ------GLLVDFARKHGANVIVRGLRA------VSDFEYEFQMAGMNRKLAPEIETVFLM--AS-----------PEYSF 123 (153)
T ss_pred ------chHHHHHHHcCCCEEEECCcc------hhhHHHHHHHHHhCCCCCCCCcEEEEe--CC-----------Cccce
Confidence 112224466788889998543 223344444432 1110 00111000 10 00124
Q ss_pred cchHHHHHHHHcCC
Q 016934 263 VSSTRVRQALAMGD 276 (380)
Q Consensus 263 ISST~IR~~L~~Gd 276 (380)
||||.||+.++.|+
T Consensus 124 iSST~IR~~~~~g~ 137 (153)
T cd02163 124 ISSSLVKEIARFGG 137 (153)
T ss_pred ecHHHHHHHHHcCC
Confidence 99999999999985
No 38
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=98.85 E-value=8.1e-08 Score=85.27 Aligned_cols=134 Identities=19% Similarity=0.157 Sum_probs=83.1
Q ss_pred eEEEEeecCccCHHHHHHHHHHHHhCCCEE-EeecCcccccccCCCCCCCChHHHHHHHHhcCCccCeEEEEeccccccc
Q 016934 106 GIVALGKFDALHIGHRELAIQASKIGAPYL-LSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQIQFSS 184 (380)
Q Consensus 106 ~vvtIG~FDGvHlGHq~LI~~A~~~g~~~V-vtF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD~vv~~~F~~~Fa~ 184 (380)
.++.-|.||.+|.||..++++|.+....++ +...+| . ..++++.++|.++++..-.....+-+..|..
T Consensus 3 iai~~GSFDPih~GHl~ii~~A~~~~D~v~v~v~~np------~-K~~~~s~e~R~~~l~~~~~~~~~v~v~~~~~---- 71 (140)
T PRK13964 3 IAIYPGSFDPFHKGHLNILKKALKLFDKVYVVVSINP------D-KSNASDLDSRFKNVKNKLKDFKNVEVLINEN---- 71 (140)
T ss_pred EEEEeeeeCCCCHHHHHHHHHHHHhCCEEEEEeccCC------C-CCCCCCHHHHHHHHHHHHcCCCCcEEecCcC----
Confidence 568899999999999999999998865532 222122 1 1257899999999876532345554444321
Q ss_pred cCCCCHHHHHHHHHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHH---hhcCcEEEEEcceeccCCCCCcccCCCCccCC
Q 016934 185 VRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLC---EEYGMDACIINSVMDKHQDSRDIDCNDSKERG 261 (380)
Q Consensus 185 i~~ls~e~Fie~L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~---~~~G~~v~iV~~v~~~~~~~~~~~~~~~~~~~ 261 (380)
.|. ++ +.++.+++.+|-|=. ...|+++...++ ++.+-+++.|-..... +..
T Consensus 72 --~l~----v~-~~~~~~a~~ivrGlR------~~~DfeyE~~~a~~n~~l~~~ietvfl~~~~-------------~~~ 125 (140)
T PRK13964 72 --KLT----AE-IAKKLGANFLIRSAR------NNIDFQYEIVLAAGNKSLNNDLETILIIPDY-------------DKI 125 (140)
T ss_pred --CcH----HH-HHHHCCCeEEEEecC------CCccHHHHHHHHHHHHhhcCCCeEEEeecCC-------------CCC
Confidence 122 12 446678999988643 345555554332 3443334444333222 247
Q ss_pred ccchHHHHHHHHcCC
Q 016934 262 QVSSTRVRQALAMGD 276 (380)
Q Consensus 262 ~ISST~IR~~L~~Gd 276 (380)
.||||.||+....|+
T Consensus 126 ~iSSs~vre~~~~~~ 140 (140)
T PRK13964 126 EYSSTLLRHKKFLKK 140 (140)
T ss_pred EEeHHHHHHHHHccC
Confidence 899999999987663
No 39
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=98.82 E-value=1.2e-07 Score=85.72 Aligned_cols=131 Identities=14% Similarity=0.137 Sum_probs=80.2
Q ss_pred EEEEeecCccCHHHHHHHHHHHHhCCCEEE--eecCcccccccCCCCCCCChHHHHHHHHhcCCcc----CeEEEEeccc
Q 016934 107 IVALGKFDALHIGHRELAIQASKIGAPYLL--SFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYC----GNVAPVEFQI 180 (380)
Q Consensus 107 vvtIG~FDGvHlGHq~LI~~A~~~g~~~Vv--tF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~v----D~vv~~~F~~ 180 (380)
++.+|.||.+|.||..++++|.+....+++ .-..+. ..+ ...++.++|+++++..-.+. +.+.+.+...
T Consensus 2 ~v~~G~FdP~H~GHl~~i~~a~~~~d~l~v~v~s~~~~----~~~-~~~~~~~~R~~mi~~~~~~~~~~~~~v~v~~~~d 76 (163)
T cd02166 2 ALFIGRFQPFHLGHLKVIKWILEEVDELIIGIGSAQES----HTL-ENPFTAGERVLMIRRALEEEGIDLSRYYIIPVPD 76 (163)
T ss_pred eEEeeccCCCCHHHHHHHHHHHHHCCEEEEEecCCCCC----CCC-CCCCCHHHHHHHHHHHHHhcCCCcCeEEEEecCC
Confidence 488999999999999999999988755433 111111 011 23457789999887432123 2566666532
Q ss_pred cccccCCCCHHHHHHHHHHhh-CccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcceeccCCCCCcccCCCCcc
Q 016934 181 QFSSVRHLSPQQFVEKLSREL-GVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKE 259 (380)
Q Consensus 181 ~Fa~i~~ls~e~Fie~L~~~L-~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~~~~~~~~~ 259 (380)
. . ..+.+.+.+.... .++.+++|.+| ..++..+.|+.+..++.. +
T Consensus 77 ~-~-----~~~~w~~~v~~~vp~~div~~g~~~------------~~~~f~~~g~~v~~~p~~--~-------------- 122 (163)
T cd02166 77 I-E-----RNSLWVSYVESLTPPFDVVYSGNPL------------VARLFKEAGYEVRRPPMF--N-------------- 122 (163)
T ss_pred C-C-----chHHHHHHHHHHCCCCCEEEECchH------------HHHhhhhcCCeEecCCcc--c--------------
Confidence 1 1 2344555443333 46778887542 223445678776665532 1
Q ss_pred CCccchHHHHHHHHcCC
Q 016934 260 RGQVSSTRVRQALAMGD 276 (380)
Q Consensus 260 ~~~ISST~IR~~L~~Gd 276 (380)
...||||.||+++.+|+
T Consensus 123 ~~~~s~t~iR~~~~~~~ 139 (163)
T cd02166 123 REEYSGTEIRRLMLGGE 139 (163)
T ss_pred CCCCCHHHHHHHHHcCC
Confidence 14699999999998663
No 40
>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial. This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis.
Probab=98.82 E-value=9.3e-08 Score=85.51 Aligned_cols=132 Identities=19% Similarity=0.235 Sum_probs=76.2
Q ss_pred EEEEeecCccCHHHHHHHHHHHHhCCCEEEe-ecCcccccccCCCCCCCChHHHHHHHHhcCCccCeEEEEecccccccc
Q 016934 107 IVALGKFDALHIGHRELAIQASKIGAPYLLS-FIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQIQFSSV 185 (380)
Q Consensus 107 vvtIG~FDGvHlGHq~LI~~A~~~g~~~Vvt-F~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD~vv~~~F~~~Fa~i 185 (380)
++.-|.||.+|.||..++++|++....+++. -.+|. ..+..+..+|.++++..-.+.+.+.+.+++
T Consensus 2 ~l~gGsFdP~H~GHl~l~~~a~~~~d~v~~~~~~~p~-------k~~~~~~~~R~~m~~~a~~~~~~~~v~~~e------ 68 (155)
T TIGR01510 2 ALYPGSFDPVTNGHLDIIKRAAALFDEVIVAVAKNPS-------KKPLFSLEERVELIKDATKHLPNVRVDVFD------ 68 (155)
T ss_pred EEEEeecCCCcHHHHHHHHHHHHhCCEEEEEEcCCCC-------CCCCcCHHHHHHHHHHHHhhCCCeEEcCcc------
Confidence 5778999999999999999999887554321 12221 124678899999987754333344433332
Q ss_pred CCCCHHHHHHHHHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHh---hcCcEEEEEcceeccCCCCCcccCCCCccCCc
Q 016934 186 RHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCE---EYGMDACIINSVMDKHQDSRDIDCNDSKERGQ 262 (380)
Q Consensus 186 ~~ls~e~Fie~L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~---~~G~~v~iV~~v~~~~~~~~~~~~~~~~~~~~ 262 (380)
.+.-..++.++...++.|.| .+-|.+.+.+++. ..+-++..+-.. .. ..-..
T Consensus 69 ------~yt~dt~~~l~~~~~i~G~~------~~~~~~~~~~~~~~~r~~~~~~~~i~~~--~~-----------~~~~~ 123 (155)
T TIGR01510 69 ------GLLVDYAKELGATFIVRGLR------AATDFEYELQMALMNKHLAPEIETVFLM--AS-----------PEYAF 123 (155)
T ss_pred ------chHHHHHHHcCCCEEEecCc------chhhHHHHHHHHhhCcccccCCcEEEEe--CC-----------cchhh
Confidence 12222445667788888743 2334455555443 000000111000 00 00125
Q ss_pred cchHHHHHHHHcCC
Q 016934 263 VSSTRVRQALAMGD 276 (380)
Q Consensus 263 ISST~IR~~L~~Gd 276 (380)
||||.||+.++.|+
T Consensus 124 iSST~IR~~i~~g~ 137 (155)
T TIGR01510 124 VSSSLVKEIASFGG 137 (155)
T ss_pred ccHHHHHHHHHcCC
Confidence 99999999999985
No 41
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins. NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=98.81 E-value=1.6e-07 Score=84.57 Aligned_cols=133 Identities=20% Similarity=0.179 Sum_probs=80.0
Q ss_pred EEEEeecCccCHHHHHHHHHHHHhCCCEE--EeecCcccccccCCCCCCCChHHHHHHHHhcCCccCeEEEEeccccccc
Q 016934 107 IVALGKFDALHIGHRELAIQASKIGAPYL--LSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQIQFSS 184 (380)
Q Consensus 107 vvtIG~FDGvHlGHq~LI~~A~~~g~~~V--vtF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD~vv~~~F~~~Fa~ 184 (380)
++.+|.||.+|.||+.++++|.+....++ ++..++.+ .....++.++|+++++..-...+.+.+..+..+
T Consensus 2 gl~~G~F~P~H~GHl~li~~a~~~~d~v~vi~~~~~~~~-----~~~~~~~~~~R~~mi~~a~~~~~~~~v~~~~~~--- 73 (158)
T cd02167 2 GIVFGKFAPLHTGHVYLIYKALSQVDELLIIVGSDDTRD-----DARTGLPLEKRLRWLREIFPDQENIVVHTLNEP--- 73 (158)
T ss_pred EEEeeccCCCCHHHHHHHHHHHHHCCEEEEEECCCCccc-----ccCCCCCHHHHHHHHHHHhcCCCCEEEEeCCCC---
Confidence 47899999999999999999998865533 33222211 113467889999998876433344544444321
Q ss_pred cCCCC-----HHHHHHH---HHHhh---CccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcceeccCCCCCccc
Q 016934 185 VRHLS-----PQQFVEK---LSREL---GVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDID 253 (380)
Q Consensus 185 i~~ls-----~e~Fie~---L~~~L---~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~~~ 253 (380)
+++ -++++.. ++.+. .++.++.|+++ |+. ..+ .....|+++..+++...
T Consensus 74 --d~~~~~~~w~~w~~~v~~~v~~~~~~~~~~vf~~~~~--~~~-----~~~--~~~~~~~~~~~v~~~r~--------- 133 (158)
T cd02167 74 --DIPEYPNGWDIWSNRVKTLIAENTRCRPDIVFTAEEY--EAA-----FEL--VLAYLGAQVVLVDPDRT--------- 133 (158)
T ss_pred --CCCCCchhHHHHHHHHHHHHhhhcCCCCCEEEEccCc--chh-----hhh--HhhcCCCeEEEeccccc---------
Confidence 222 2223433 33321 56789999886 221 111 12356778777765321
Q ss_pred CCCCccCCccchHHHHHHHH
Q 016934 254 CNDSKERGQVSSTRVRQALA 273 (380)
Q Consensus 254 ~~~~~~~~~ISST~IR~~L~ 273 (380)
...||+|.||+...
T Consensus 134 ------~~~iSaT~IR~~p~ 147 (158)
T cd02167 134 ------DISVSATQIRENPF 147 (158)
T ss_pred ------cCCcCHHHHHhCHH
Confidence 25799999998653
No 42
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=98.80 E-value=4.1e-08 Score=99.08 Aligned_cols=139 Identities=16% Similarity=0.136 Sum_probs=91.5
Q ss_pred ceEEEEeecCccCHHHHHHHHHHHHhCCCEEE--eecCcccccc-cCCCCCCCChHHHHHHHHhcCCccCeEEEEecccc
Q 016934 105 GGIVALGKFDALHIGHRELAIQASKIGAPYLL--SFIGMAEVFG-WEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQIQ 181 (380)
Q Consensus 105 ~~vvtIG~FDGvHlGHq~LI~~A~~~g~~~Vv--tF~~P~~vl~-~~~~~~l~s~~~R~~lL~~lg~~vD~vv~~~F~~~ 181 (380)
..|++-|.||-+|.||..+|++|++.|..++| .-|. .+.. ..+..|+++.++|.+.+.++. +||.|++..+.
T Consensus 193 kiv~~~G~FDl~H~GHi~~L~~A~~lgd~LIVgV~sD~--~v~~~Kg~~~Pi~~~~eR~~~v~a~~-~Vd~Vvi~~~~-- 267 (353)
T PTZ00308 193 RIVYVDGSFDLFHIGHIRVLQKARELGDYLIVGVHEDQ--VVNEQKGSNYPIMNLNERVLGVLSCR-YVDEVVIGAPF-- 267 (353)
T ss_pred eEEEECCccCCCCHHHHHHHHHHHHhCCEEEEEEcchH--HhHhhcCCCCCCCCHHHHHHHHHhhC-CCCeEEEcCCC--
Confidence 46788899999999999999999999877553 3332 1111 123468999999999998886 58988764221
Q ss_pred ccccCCCCHHHHHHHHHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcceeccCCCCCcccCCCCccCC
Q 016934 182 FSSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERG 261 (380)
Q Consensus 182 Fa~i~~ls~e~Fie~L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~~~~~~~~~~~ 261 (380)
-.+.+|+ ++++++.+|-|.|+.--.. .+..+.. +..+ .+-.+..++.. .
T Consensus 268 ------~~~~~~i----~~~~~d~vv~G~d~~~~~~-~~~~d~y-~~~k-~~G~~~~i~~~------------------~ 316 (353)
T PTZ00308 268 ------DVTKEVI----DSLHINVVVGGKFSDLVNE-EGGSDPY-EVPK-AMGIFKEVDSG------------------C 316 (353)
T ss_pred ------CChHHHH----HHhCCCEEEECCCCccccC-CCcccch-HHHh-cCceEEEeCCC------------------C
Confidence 2344555 5689999999999964111 1111111 1222 33345666642 3
Q ss_pred ccchHHHHHHHHcCCchh
Q 016934 262 QVSSTRVRQALAMGDMKY 279 (380)
Q Consensus 262 ~ISST~IR~~L~~GdI~~ 279 (380)
.+|+|.|-+-|....-..
T Consensus 317 ~~sTt~ii~RI~~~r~~~ 334 (353)
T PTZ00308 317 DLTTDSIVDRVVKNRLAF 334 (353)
T ss_pred CccHHHHHHHHHHhHHHH
Confidence 599999998887554433
No 43
>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional
Probab=98.80 E-value=3.8e-08 Score=98.09 Aligned_cols=141 Identities=20% Similarity=0.213 Sum_probs=93.1
Q ss_pred eEEEEeecCccCHHHHHHHHHHHHhCCCEE--EeecCcccccccCCCCCCCChHHHHHHHHhc-CCccCeEEEEeccccc
Q 016934 106 GIVALGKFDALHIGHRELAIQASKIGAPYL--LSFIGMAEVFGWEPRAPIVAKCDRKRVLSSW-APYCGNVAPVEFQIQF 182 (380)
Q Consensus 106 ~vvtIG~FDGvHlGHq~LI~~A~~~g~~~V--vtF~~P~~vl~~~~~~~l~s~~~R~~lL~~l-g~~vD~vv~~~F~~~F 182 (380)
.|++-|.||-+|.||..||++|++.+..++ ||-|.. +......| .+.++|.+.++++ ....+.+.+.+.+..|
T Consensus 2 ~V~vgGTFD~lH~GH~~lL~~A~~~gd~LiVgvt~D~~---~~~~k~~~-~~~e~R~~~v~~fl~~~~~~~~i~~i~D~~ 77 (322)
T PRK01170 2 ITVVGGTFSKLHKGHKALLKKAIETGDEVVIGLTSDEY---VRKNKVYP-IPYEDRKRKLENFIKKFTNKFRIRPIDDRY 77 (322)
T ss_pred EEEEccccccCChHHHHHHHHHHHcCCEEEEEEccHHH---HHhcCCCC-CCHHHHHHHHHHHHHhcCCcEEEEecCCCC
Confidence 368889999999999999999999886533 665542 11112234 7889999888774 2113333344433333
Q ss_pred cccCCCCHHHHHHHHHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcE---EEEEcceeccCCCCCcccCCCCcc
Q 016934 183 SSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMD---ACIINSVMDKHQDSRDIDCNDSKE 259 (380)
Q Consensus 183 a~i~~ls~e~Fie~L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~---v~iV~~v~~~~~~~~~~~~~~~~~ 259 (380)
-- -...-.++.|||+++=.+| ...+.+.-++.|+. +.+|+.+... +
T Consensus 78 Gp------------t~~~~~~d~IVVS~ET~~~------~~~IN~~R~e~Gl~pleIv~I~~v~~~-------------d 126 (322)
T PRK01170 78 GN------------TLYEEDYEIIVVSPETYQR------ALKINEIRIKNGLPPLKIVRVPYVLAE-------------D 126 (322)
T ss_pred CC------------CcccCCCCEEEEecccccc------HHHHHHHHHHCCCCceEEEEEEeEEcC-------------C
Confidence 20 0112468999999998765 67888888888866 4445544322 3
Q ss_pred CCccchHHHHHHHHcCCchhhhhhcc
Q 016934 260 RGQVSSTRVRQALAMGDMKYVSELLG 285 (380)
Q Consensus 260 ~~~ISST~IR~~L~~GdI~~An~LLG 285 (380)
+.+||||+||+ |+|+..-+++.
T Consensus 127 ~~~iSSTrIr~----~eid~~g~~~~ 148 (322)
T PRK01170 127 LFPISSTRIIN----GEIDGNGKRLK 148 (322)
T ss_pred CCcccHHHHhh----hhccccCCcCC
Confidence 57899999985 66776666665
No 44
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=98.71 E-value=5.3e-07 Score=82.60 Aligned_cols=132 Identities=16% Similarity=0.149 Sum_probs=80.5
Q ss_pred EEEEeecCccCHHHHHHHHHHHHhCCCEEEee-cCcccccccCCCCCCCChHHHHHHHHhc----CCccCeEEEEecccc
Q 016934 107 IVALGKFDALHIGHRELAIQASKIGAPYLLSF-IGMAEVFGWEPRAPIVAKCDRKRVLSSW----APYCGNVAPVEFQIQ 181 (380)
Q Consensus 107 vvtIG~FDGvHlGHq~LI~~A~~~g~~~VvtF-~~P~~vl~~~~~~~l~s~~~R~~lL~~l----g~~vD~vv~~~F~~~ 181 (380)
++.+|.||.+|.||..++++|.+....+++.. .. .. +....+.++..+|.++++.. +...+.+.+.|....
T Consensus 3 gl~~G~F~P~H~GHl~~i~~a~~~~d~v~v~i~s~-~~---~~~~~~p~~~~~R~~mi~~a~~~~~~~~~~~~~~pi~D~ 78 (174)
T PRK01153 3 ALFIGRFQPFHKGHLEVIKWILEEVDELIIGIGSA-QE---SHTLKNPFTAGERILMIRKALEEEGIDLSRYYIIPIPDI 78 (174)
T ss_pred EEEeeccCCCCHHHHHHHHHHHHhCCEEEEEecCC-CC---CCCCCCCCCHHHHHHHHHHHHhcCCCCcceeeEecCCCc
Confidence 58899999999999999999988654443311 11 00 00112346778899887754 211235555554321
Q ss_pred ccccCCCCHHHHHHHHHHhh-CccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcceeccCCCCCcccCCCCccC
Q 016934 182 FSSVRHLSPQQFVEKLSREL-GVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKER 260 (380)
Q Consensus 182 Fa~i~~ls~e~Fie~L~~~L-~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~~~~~~~~~~ 260 (380)
...+.+...+.... .++.+++|+ ....++..+.|++|..++.. + .
T Consensus 79 ------~~~~~w~~~v~~~~~~~d~v~~~~------------~y~~~~f~~~g~~v~~~p~~--~--------------~ 124 (174)
T PRK01153 79 ------EFNSIWVSHVESYTPPFDVVYTGN------------PLVARLFREAGYEVRQPPMF--N--------------R 124 (174)
T ss_pred ------chHHHHHHHHHHhCCCCCEEEECC------------hHHHHhchhhCCeEecCCcc--c--------------c
Confidence 13445555543322 456677774 23444556788887665532 1 2
Q ss_pred CccchHHHHHHHHcCC
Q 016934 261 GQVSSTRVRQALAMGD 276 (380)
Q Consensus 261 ~~ISST~IR~~L~~Gd 276 (380)
..+|||.||+++.+|+
T Consensus 125 ~~iSsT~IR~~i~~g~ 140 (174)
T PRK01153 125 EEYSGTEIRRRMIEGD 140 (174)
T ss_pred CCCCHHHHHHHHHcCC
Confidence 4799999999998886
No 45
>TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species.
Probab=98.70 E-value=2.1e-07 Score=85.82 Aligned_cols=155 Identities=18% Similarity=0.133 Sum_probs=86.7
Q ss_pred EeecCccCHHHHHHHHHHHHhC-CC-E--EEeecCcccccccCCCCCCCChHHHHHHHHhcCCccCeEEEEecccccccc
Q 016934 110 LGKFDALHIGHRELAIQASKIG-AP-Y--LLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQIQFSSV 185 (380)
Q Consensus 110 IG~FDGvHlGHq~LI~~A~~~g-~~-~--VvtF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD~vv~~~F~~~Fa~i 185 (380)
-|.||.+|.||..++++|.+.. .. + +.+..+|.+ .....++.++|.++++..-.+.+.+.+-+++.+...
T Consensus 3 gGsFdP~H~GHl~l~~~a~~~~~~d~v~~~p~~~~p~k-----~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~~~~- 76 (193)
T TIGR00482 3 GGSFDPIHYGHLLLAEEALDHLDLDKVIFVPTANPPHK-----KTYEAASSHHRLAMLKLAIEDNPKFEVDDFEIKRGG- 76 (193)
T ss_pred cccCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCCCCC-----CCCCCCCHHHHHHHHHHHHhcCCCEEEeHHHHhCCC-
Confidence 5999999999999999998763 22 2 233333322 112346889999998754323455555555433221
Q ss_pred CCCCHHHHHHHHHHhhC-c-cEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcceeccCCCC--Cc-------cc-
Q 016934 186 RHLSPQQFVEKLSRELG-V-RGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDS--RD-------ID- 253 (380)
Q Consensus 186 ~~ls~e~Fie~L~~~L~-v-k~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~~--~~-------~~- 253 (380)
..-| -+-++.|.+.+. . -.+++|.|---.-..+-+.+.|-+.+. +.++++-...-... .. .+
T Consensus 77 ~syT-~~tl~~l~~~~p~~~~~~iiG~D~l~~l~~W~~~~~i~~~~~-----~iv~~R~g~~~~~~~~~~~~~~~~~~~i 150 (193)
T TIGR00482 77 PSYT-IDTLKHLKKKYPDVELYFIIGADALRSFPLWKDWQELLELVH-----LVIVPRPGYTLDKALLEKAILRMHHGNL 150 (193)
T ss_pred CCCH-HHHHHHHHHHCCCCeEEEEEcHHHhhhhccccCHHHHHHhCc-----EEEEeCCCCCcchhhhHHHHhcccCCcE
Confidence 0112 234555655552 2 379999997666666666666655432 44555422110000 00 00
Q ss_pred CCCCccCCccchHHHHHHHHcCC
Q 016934 254 CNDSKERGQVSSTRVRQALAMGD 276 (380)
Q Consensus 254 ~~~~~~~~~ISST~IR~~L~~Gd 276 (380)
-........||||.||+.|++|+
T Consensus 151 ~~~~~~~~~iSST~IR~~l~~g~ 173 (193)
T TIGR00482 151 TLLHNPRVPISSTEIRQRIRQGK 173 (193)
T ss_pred EEEcCCccccCHHHHHHHHHcCC
Confidence 00001124699999999999874
No 46
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.69 E-value=1.7e-07 Score=95.31 Aligned_cols=129 Identities=22% Similarity=0.327 Sum_probs=98.4
Q ss_pred ceEEEEeecCccCHHHHHHHHHHHHhCCCEE--EeecC-cccccccCCCCCCCChHHHHHHHHhcCCccCeEEEEecccc
Q 016934 105 GGIVALGKFDALHIGHRELAIQASKIGAPYL--LSFIG-MAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQIQ 181 (380)
Q Consensus 105 ~~vvtIG~FDGvHlGHq~LI~~A~~~g~~~V--vtF~~-P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD~vv~~~F~~~ 181 (380)
..|+|-|.||-+|.||-.++++|++.|...| +..|. -++ + ..+..|+.+.++|.-.|..+.. ||.+++ |+.
T Consensus 333 ~vvfTNGcFDIlH~GHvsyL~~Ar~lgd~Livg~NsDaSvkr-L-KG~~RPin~~~~Ra~vLa~L~~-VD~vV~--F~e- 406 (467)
T COG2870 333 KVVFTNGCFDILHAGHVTYLAQARALGDRLIVGVNSDASVKR-L-KGESRPINSEEDRAAVLAALES-VDLVVI--FDE- 406 (467)
T ss_pred eEEEecchhhhccccHHHHHHHHHhhCCeEEEEeccchhhhh-h-cCCCCCCCcHHHHHHHHhhccc-ceEEEE--ecC-
Confidence 3789999999999999999999999998855 45554 233 2 2345789999999999999985 897775 432
Q ss_pred ccccCCCCHHHHHHHHHHhhCccEEEEcCCCCCCCCCCCCHHHH--HHHHhhcCcEEEEEcceeccCCCCCcccCCCCcc
Q 016934 182 FSSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASEL--VRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKE 259 (380)
Q Consensus 182 Fa~i~~ls~e~Fie~L~~~L~vk~IVVG~DFrFG~~r~Gd~~~L--k~l~~~~G~~v~iV~~v~~~~~~~~~~~~~~~~~ 259 (380)
-+|++. ++.+.++-+|-|-||. .+++ .+....+|-+|.+++-.
T Consensus 407 ------dTP~~L----I~~~~PdilVKGgDy~--------~~~i~g~~~v~~~GG~v~~i~f~----------------- 451 (467)
T COG2870 407 ------DTPEEL----IEAVKPDILVKGGDYK--------IEKIVGADIVEAYGGEVLLIPFE----------------- 451 (467)
T ss_pred ------CCHHHH----HHHhCcceEEccCCCC--------hhhccchhhhhhcCCeEEEEecc-----------------
Confidence 577774 4567899999999996 3444 24456788899888642
Q ss_pred CCccchHHHHHHHHcC
Q 016934 260 RGQVSSTRVRQALAMG 275 (380)
Q Consensus 260 ~~~ISST~IR~~L~~G 275 (380)
+..|+|.|-+.|+++
T Consensus 452 -~g~STt~ii~ki~~~ 466 (467)
T COG2870 452 -EGKSTTKIIEKIRAK 466 (467)
T ss_pred -cCCcHHHHHHHHhcc
Confidence 358999998888764
No 47
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=98.64 E-value=8.7e-08 Score=72.71 Aligned_cols=58 Identities=19% Similarity=0.330 Sum_probs=42.2
Q ss_pred EEEEeecCccCHHHHHHHHHHHHhCCCEE--EeecCcccccccCCCCCCCChHHHHHHHHhcC
Q 016934 107 IVALGKFDALHIGHRELAIQASKIGAPYL--LSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWA 167 (380)
Q Consensus 107 vvtIG~FDGvHlGHq~LI~~A~~~g~~~V--vtF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg 167 (380)
++++|.||++|.||+.++++|++.+...+ ++++. ...+....++++.++|.++++.+-
T Consensus 2 ~~~~G~Fdp~H~GH~~~l~~a~~~~~~~vv~i~~~~---~~~~~~~~~~~~~~~R~~~~~~~~ 61 (66)
T TIGR00125 2 VIFVGTFDPFHLGHLDLLERAKELFDELIVGVGSDQ---FVNPLKGEPVFSLEERLEMLKALK 61 (66)
T ss_pred EEEcCccCCCCHHHHHHHHHHHHhCCEEEEEECchH---hccccCCCCCCCHHHHHHHHHHhc
Confidence 68999999999999999999999876432 33321 121122237889999999988764
No 48
>PLN02413 choline-phosphate cytidylyltransferase
Probab=98.64 E-value=4.1e-07 Score=89.00 Aligned_cols=145 Identities=17% Similarity=0.219 Sum_probs=93.5
Q ss_pred CceEEEEeecCccCHHHHHHHHHHHHhC--CCEEE--eecCcccccccCCCCCCCChHHHHHHHHhcCCccCeEEEE-ec
Q 016934 104 AGGIVALGKFDALHIGHRELAIQASKIG--APYLL--SFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPV-EF 178 (380)
Q Consensus 104 ~~~vvtIG~FDGvHlGHq~LI~~A~~~g--~~~Vv--tF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD~vv~~-~F 178 (380)
...|++-|.||-+|.||..+|++|++.+ ..+|+ .-|. .+.... ..|+++..+|.+.|.++. +||.|++- |+
T Consensus 27 ~~rVyvdG~FDLfH~GHir~L~qAK~lg~~d~LIVGV~sDe--~v~~~K-GrPIm~~~ER~e~V~acK-yVDeVV~~aP~ 102 (294)
T PLN02413 27 PVRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDE--LTHKYK-GKTVMTEDERYESLRHCK-WVDEVIPDAPW 102 (294)
T ss_pred ceEEEEeCchhhCCHHHHHHHHHHHHhCCCCEEEEEecccH--HHHhcC-CCCCCCHHHHHHHHHhcc-cccEEeeCCCc
Confidence 3468899999999999999999999996 34443 4442 121112 247999999999999998 69998862 22
Q ss_pred cccccccCCCCHHHHHHHHHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcceeccCCCCCcccCCCCc
Q 016934 179 QIQFSSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSK 258 (380)
Q Consensus 179 ~~~Fa~i~~ls~e~Fie~L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~~~~~~~~ 258 (380)
....+|++ +++++.+|.|.+-- ...+++-.+.-++.+++|. +..++..
T Consensus 103 ---------~~t~efI~----~~kpDiVvhGd~~~--~d~~~~g~D~Y~~vK~~G~-f~~i~Rt---------------- 150 (294)
T PLN02413 103 ---------VITQEFLD----KHRIDYVAHDALPY--ADASGAGKDVYEFVKKIGK-FKETKRT---------------- 150 (294)
T ss_pred ---------cccHHHHH----HhCCCEEEECCCCC--ccccccCchhHHHHHHCCe-EEEecCC----------------
Confidence 12356654 67999999985211 1111222233334455554 3444431
Q ss_pred cCCccchHHHHHHHHcCCchhhhhhcce
Q 016934 259 ERGQVSSTRVRQALAMGDMKYVSELLGR 286 (380)
Q Consensus 259 ~~~~ISST~IR~~L~~GdI~~An~LLGr 286 (380)
..+|||.|.+-|....-..+.+-+-|
T Consensus 151 --~gvSTTdII~RIlk~y~~Y~~Rn~~r 176 (294)
T PLN02413 151 --DGISTSDIIMRIVKDYNQYVMRNLAR 176 (294)
T ss_pred --CCcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 35999999999987655555554444
No 49
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=98.64 E-value=1.4e-07 Score=92.61 Aligned_cols=66 Identities=20% Similarity=0.092 Sum_probs=53.1
Q ss_pred ceEEEEeecCccCHHHHHHHHHHHHhCCCEEEeecC-cccccccCC-CCCCCChHHHHHHHHhcCCccCeEEE
Q 016934 105 GGIVALGKFDALHIGHRELAIQASKIGAPYLLSFIG-MAEVFGWEP-RAPIVAKCDRKRVLSSWAPYCGNVAP 175 (380)
Q Consensus 105 ~~vvtIG~FDGvHlGHq~LI~~A~~~g~~~VvtF~~-P~~vl~~~~-~~~l~s~~~R~~lL~~lg~~vD~vv~ 175 (380)
+-|+|+|+ +|+|||+||++|++.+..+|+||++ |..+...+. ...+.+.+++.++|+.+| +|.++.
T Consensus 25 g~VpTmG~---LH~GH~~LI~~a~~~a~~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~G--VD~vf~ 92 (282)
T TIGR00018 25 GFVPTMGN---LHDGHMSLIDRAVAENDVVVVSIFVNPMQFGPNEDLEAYPRTLEEDCALLEKLG--VDVVFA 92 (282)
T ss_pred EEEECCCc---ccHHHHHHHHHHHHhCCeEEEEecCChHHhCCccccccCCCCHHHHHHHHHHcC--CCEEEC
Confidence 56789999 9999999999999988778899997 877443222 234678899999999998 787653
No 50
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=98.61 E-value=3.1e-07 Score=83.87 Aligned_cols=141 Identities=14% Similarity=0.143 Sum_probs=82.4
Q ss_pred eEEEEeecCccCHHHHHHHHHHHHhCCCEEEeecCcccccccCCCCCCCChHHHHHHHHhcCCcc--CeEEEEecccccc
Q 016934 106 GIVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYC--GNVAPVEFQIQFS 183 (380)
Q Consensus 106 ~vvtIG~FDGvHlGHq~LI~~A~~~g~~~VvtF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~v--D~vv~~~F~~~Fa 183 (380)
.++.-|.||.+|.||..+++++. +..-|+ |.| .... .+..+.++.++|.++++..-... ..+.+.+++.+..
T Consensus 4 i~ifGGSFDP~H~GHl~ia~~~~--~~d~v~-~vP-~~~~--~~~k~~~~~~~R~~M~~~ai~~~~~~~~~v~~~E~~~~ 77 (174)
T PRK08887 4 IAVFGSAFNPPSLGHKSVIESLS--HFDLVL-LVP-SIAH--AWGKTMLDYETRCQLVDAFIQDLGLSNVQRSDIEQELY 77 (174)
T ss_pred EEEeCCCCCCCCHHHHHHHHHhh--cCCEEE-EEE-CCCC--cccCCCCCHHHHHHHHHHHHhccCCCceEEehHHhhhc
Confidence 45777999999999999999853 333221 222 0000 11235678899999987653222 3555555543320
Q ss_pred --ccCCCCHHHHHHHHHHhhC--ccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcceeccCCCCCcccCCCCcc
Q 016934 184 --SVRHLSPQQFVEKLSRELG--VRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKE 259 (380)
Q Consensus 184 --~i~~ls~e~Fie~L~~~L~--vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~~~~~~~~~ 259 (380)
.-..-+. +-++.+.+++. --.+++|.|---.-..+.+++.|.+.+. +.+.+.
T Consensus 78 ~~~~~~yT~-~tl~~l~~~~p~~~~~~iiG~D~l~~l~~W~~~~~i~~~~~-----l~~~~~------------------ 133 (174)
T PRK08887 78 APDESVTTY-ALLTRLQELYPEADLTFVIGPDNFLKFAKFYKADEITQRWT-----VMACPE------------------ 133 (174)
T ss_pred cCCCCcchH-HHHHHHHHHCCCCeEEEEEccchHHHHHHhCCHHHHHhhCe-----EEEeCC------------------
Confidence 0001222 34555554442 2357889987666666667766654432 333321
Q ss_pred CCccchHHHHHHHHcCC
Q 016934 260 RGQVSSTRVRQALAMGD 276 (380)
Q Consensus 260 ~~~ISST~IR~~L~~Gd 276 (380)
...||||.||+.++.|.
T Consensus 134 ~~~ISST~IR~~l~~g~ 150 (174)
T PRK08887 134 KVPIRSTDIRNALQNGK 150 (174)
T ss_pred CCCcCHHHHHHHHHcCC
Confidence 14699999999998774
No 51
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=98.59 E-value=4.7e-07 Score=93.10 Aligned_cols=137 Identities=17% Similarity=0.229 Sum_probs=91.4
Q ss_pred CceEEEEeecCccCHHHHHHHHHHHHhCCCEE--EeecCcccccc-cCCCCCCCChHHHHHHHHhcCCccCeEEE-Eecc
Q 016934 104 AGGIVALGKFDALHIGHRELAIQASKIGAPYL--LSFIGMAEVFG-WEPRAPIVAKCDRKRVLSSWAPYCGNVAP-VEFQ 179 (380)
Q Consensus 104 ~~~vvtIG~FDGvHlGHq~LI~~A~~~g~~~V--vtF~~P~~vl~-~~~~~~l~s~~~R~~lL~~lg~~vD~vv~-~~F~ 179 (380)
...|++-|.||-+|.||.++|++|++.|..++ |+.|. .+.. ..+..|+++..+|.+.+.++. +||.|++ .||
T Consensus 251 ~~iVyv~G~FDlfH~GHi~~L~~Ak~lGd~LIVGV~sD~--~v~~~KG~~~Pi~~~~ER~~~v~ack-~VD~VVi~ap~- 326 (418)
T PLN02406 251 ARIVYIDGAFDLFHAGHVEILRLARALGDFLLVGIHTDQ--TVSAHRGAHRPIMNLHERSLSVLACR-YVDEVIIGAPW- 326 (418)
T ss_pred CeEEEECCeeccCCHHHHHHHHHHHHhCCEEEEEEeccH--HHHHhcCCCCCCCCHHHHHHHHhccC-cccEEEeCCCC-
Confidence 45788889999999999999999999997644 44443 1111 123578999999999999997 6998886 232
Q ss_pred ccccccCCCCHHHHHHHHHHhhCccEEEEcCCCCC-CCCCC-CCHHHHHHHHhhcCcEEEEEcceeccCCCCCcccCCCC
Q 016934 180 IQFSSVRHLSPQQFVEKLSRELGVRGVVAGENYRF-GYKAA-GDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDS 257 (380)
Q Consensus 180 ~~Fa~i~~ls~e~Fie~L~~~L~vk~IVVG~DFrF-G~~r~-Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~~~~~~~ 257 (380)
.++++|+ ++++++.+|-|.|+.- ..... -|.- ...++.|. +.+++..
T Consensus 327 --------~~~~~~i----~~~~~d~vvhG~~~~~~~~~~~~~D~Y---~v~k~~G~-~~~i~~~--------------- 375 (418)
T PLN02406 327 --------EVSKDMI----TTFNISLVVHGTVAENNDFLKGEDDPY---AVPKSMGI-FQVLESP--------------- 375 (418)
T ss_pred --------CCCHHHH----HHhCCCEEEECCcCCCccccCCCCcch---HHHhcCce-EEEeCCC---------------
Confidence 2355665 4679999999988731 00111 1111 22334443 4455531
Q ss_pred ccCCccchHHHHHHHHcCCch
Q 016934 258 KERGQVSSTRVRQALAMGDMK 278 (380)
Q Consensus 258 ~~~~~ISST~IR~~L~~GdI~ 278 (380)
..||+|.|-+-|....-.
T Consensus 376 ---~~iSTt~II~RI~~~~~~ 393 (418)
T PLN02406 376 ---LDITTSTIIRRIVANHEA 393 (418)
T ss_pred ---CCCcHHHHHHHHHHhHHH
Confidence 459999998888765433
No 52
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=98.58 E-value=5.7e-07 Score=84.09 Aligned_cols=160 Identities=18% Similarity=0.104 Sum_probs=95.7
Q ss_pred ceEEEEeecCccCHHHHHHHHHHHHh-CCCE-EE--eecCcccccccCCCCCCCChHHHHHHHHhcCCccCeEEEEeccc
Q 016934 105 GGIVALGKFDALHIGHRELAIQASKI-GAPY-LL--SFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQI 180 (380)
Q Consensus 105 ~~vvtIG~FDGvHlGHq~LI~~A~~~-g~~~-Vv--tF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD~vv~~~F~~ 180 (380)
..++.-|+||.+|.||..++++|.+. +..- ++ |..||. .+...+.+.++|+++|+..-...+.+.+.++..
T Consensus 4 ~i~lfGGsFdP~H~GHl~ia~~~~~~l~ld~vi~~ps~~~p~-----k~~~~~a~~~~R~~Ml~la~~~~~~~~v~~~e~ 78 (197)
T COG1057 4 KIALFGGSFDPPHYGHLLIAEEALDQLGLDKVIFLPSPVPPH-----KKKKELASAEHRLAMLELAIEDNPRFEVSDREI 78 (197)
T ss_pred eEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEecCCCCCC-----CCCccCCCHHHHHHHHHHHHhcCCCcceeHHHH
Confidence 35677899999999999999998765 5443 22 222221 112357789999999877643344433333322
Q ss_pred cccccCCCCHHHHHHHHHHhhCccE---EEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcceecc--CCCCCcc---
Q 016934 181 QFSSVRHLSPQQFVEKLSRELGVRG---VVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDK--HQDSRDI--- 252 (380)
Q Consensus 181 ~Fa~i~~ls~e~Fie~L~~~L~vk~---IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~~~--~~~~~~~--- 252 (380)
+-.. ..-|. +-++.+.++++++. +++|.|---.-.++-++++|.++++ +.++++-.+. .....+.
T Consensus 79 ~r~g-~sYT~-dTl~~~~~~~~p~~~~~fIiGaD~l~~l~~W~~~~ell~~~~-----~vv~~Rp~~~~~~~~~~~~~~~ 151 (197)
T COG1057 79 KRGG-PSYTI-DTLEHLRQEYGPDVELYFIIGADNLASLPKWYDWDELLKLVT-----FVVAPRPGYGELELSLLSSGGA 151 (197)
T ss_pred HcCC-CcchH-HHHHHHHHHhCCCCcEEEEEehHHhhhhhhhhhHHHHHHhCC-----EEEEecCCchhhhhhhhcCCce
Confidence 1110 11223 33666666777774 8999998877778888998887765 4454432221 0000000
Q ss_pred cCCCCccCCccchHHHHHHHHcCC
Q 016934 253 DCNDSKERGQVSSTRVRQALAMGD 276 (380)
Q Consensus 253 ~~~~~~~~~~ISST~IR~~L~~Gd 276 (380)
.-........||||.||+.+..|.
T Consensus 152 ~~~~~~~~~~ISSt~IR~~~~~~~ 175 (197)
T COG1057 152 IILLDLPRLDISSTEIRERIRRGA 175 (197)
T ss_pred EEEccCccccCchHHHHHHHhCCC
Confidence 000011124699999999999874
No 53
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=98.56 E-value=8.7e-07 Score=88.71 Aligned_cols=161 Identities=14% Similarity=0.180 Sum_probs=91.7
Q ss_pred eEEEEeecCccCHHHHHHHHHHHHh-CCC-E--EEeecCcccccccCCCCCCCChHHHHHHHHhcCCccCeEEEEecccc
Q 016934 106 GIVALGKFDALHIGHRELAIQASKI-GAP-Y--LLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQIQ 181 (380)
Q Consensus 106 ~vvtIG~FDGvHlGHq~LI~~A~~~-g~~-~--VvtF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD~vv~~~F~~~ 181 (380)
.++.-|+||.+|.||..++++|.+. +.. + +.+..+|.+ +.....+..+|.++++..-.+.+.+.+.+++.+
T Consensus 3 i~i~gGsFdP~H~GHl~la~~a~~~~~~d~v~~~p~~~~p~K-----~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~ 77 (342)
T PRK07152 3 IAIFGGSFDPIHKGHINIAKKAIKKLKLDKLFFVPTYINPFK-----KKQKASNGEHRLNMLKLALKNLPKMEVSDFEIK 77 (342)
T ss_pred EEEEeeCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCCCCCC-----CCCCCCCHHHHHHHHHHHHhhCCCeEEeHHHHh
Confidence 4577899999999999999999865 433 2 233333321 112234448899988654323455555555432
Q ss_pred ccccCCCC-HHHHHHHHHHhhC--ccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcceeccCCCCCc-ccC-CC
Q 016934 182 FSSVRHLS-PQQFVEKLSRELG--VRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRD-IDC-ND 256 (380)
Q Consensus 182 Fa~i~~ls-~e~Fie~L~~~L~--vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~-~~~-~~ 256 (380)
-. ..+ .-+-++.+.+.+. --.+++|.|.--.-..+-+++.|.+.+ .+.++++-......... ..- ..
T Consensus 78 ~~---~~syt~~tl~~l~~~~p~~~~~~iiG~D~~~~l~~W~~~~~l~~~~-----~~iv~~R~g~~~~~~~~~~~i~~~ 149 (342)
T PRK07152 78 RQ---NVSYTIDTIKYFKKKYPNDEIYFIIGSDNLEKFKKWKNIEEILKKV-----QIVVFKRKKNINKKNLKKYNVLLL 149 (342)
T ss_pred CC---CCCcHHHHHHHHHHhCCCCcEEEEecHHHhhhcccccCHHHHHHhC-----CEEEEECCCCCcccccccCcEEEe
Confidence 22 111 1234555544442 238899999877777777777776544 35566552211000000 000 00
Q ss_pred CccCCccchHHHHHHHHcCCchh
Q 016934 257 SKERGQVSSTRVRQALAMGDMKY 279 (380)
Q Consensus 257 ~~~~~~ISST~IR~~L~~GdI~~ 279 (380)
+.....||||.||+.++.|.+..
T Consensus 150 ~~~~~~iSST~IR~~~~~~~vP~ 172 (342)
T PRK07152 150 KNKNLNISSTKIRKGNLLGKLDP 172 (342)
T ss_pred cCCccccCHHHHHHHHHcCCCCH
Confidence 01124699999999999997554
No 54
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=98.50 E-value=2.3e-06 Score=82.36 Aligned_cols=123 Identities=15% Similarity=0.141 Sum_probs=75.1
Q ss_pred ceEEEEeecCccCHHHHHHHHHHHHh-CCC-EE--EeecCcccccccCCCCCCCChHHHHHHHHhcCCccC----eEEEE
Q 016934 105 GGIVALGKFDALHIGHRELAIQASKI-GAP-YL--LSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCG----NVAPV 176 (380)
Q Consensus 105 ~~vvtIG~FDGvHlGHq~LI~~A~~~-g~~-~V--vtF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD----~vv~~ 176 (380)
..++.-|.||.+|.||..++++|.+. ++. ++ .+.+||.+ ..+.+.++|+++++..-.+.+ .+.+.
T Consensus 23 ~IgifGGSFdPiH~GHl~ia~~~~~~l~ld~v~~iP~~~pp~K-------~~~~~~~~Rl~M~~lAi~~~~~~~~~~~v~ 95 (243)
T PRK06973 23 RIGILGGTFDPIHDGHLALARRFADVLDLTELVLIPAGQPWQK-------ADVSAAEHRLAMTRAAAASLVLPGVTVRVA 95 (243)
T ss_pred eEEEECCCCCCCcHHHHHHHHHHHHHcCCCEEEEEECCcCCCC-------CCCCCHHHHHHHHHHHHHhccCCCceEEEe
Confidence 45677899999999999999999875 433 22 23322221 246688899998765311111 23333
Q ss_pred eccccccccCCCCHHHHHHHHHHhhCc---cEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcc
Q 016934 177 EFQIQFSSVRHLSPQQFVEKLSRELGV---RGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINS 241 (380)
Q Consensus 177 ~F~~~Fa~i~~ls~e~Fie~L~~~L~v---k~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~ 241 (380)
+++.+-.. ...+ -+-++.|.++++. -.+++|.|--..-..+-+.+.|-+++. +.|+++
T Consensus 96 ~~Ei~~~g-~syT-idTL~~l~~~~~p~~~~~fiiG~D~l~~l~~W~~~~~L~~~~~-----lvV~~R 156 (243)
T PRK06973 96 TDEIEHAG-PTYT-VDTLARWRERIGPDASLALLIGADQLVRLDTWRDWRRLFDYAH-----LCAATR 156 (243)
T ss_pred HhhhhCCC-CCcH-HHHHHHHHHHcCCCCCEEEEEchhhHhhcCCcccHHHHHHhCC-----EEEEEC
Confidence 33322111 0122 2345556666622 379999999888888888888876653 445544
No 55
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=98.50 E-value=1.3e-06 Score=80.45 Aligned_cols=132 Identities=14% Similarity=0.181 Sum_probs=75.6
Q ss_pred EEEEeecCccCHHHHHHHHHHHHhCCCEEEe--ecCcccccccCCCCCCCChHHHHHHHHhc----CCccCeEEEEeccc
Q 016934 107 IVALGKFDALHIGHRELAIQASKIGAPYLLS--FIGMAEVFGWEPRAPIVAKCDRKRVLSSW----APYCGNVAPVEFQI 180 (380)
Q Consensus 107 vvtIG~FDGvHlGHq~LI~~A~~~g~~~Vvt--F~~P~~vl~~~~~~~l~s~~~R~~lL~~l----g~~vD~vv~~~F~~ 180 (380)
++.+|.||.+|.||..++++|.+....+++. -.++.. . ..+.++.++|.++++.. |...+.+.+.|+..
T Consensus 2 ~l~~GrF~P~H~GHl~~i~~a~~~~~~vii~i~s~~~~~----~-~~~p~~~~eR~~mi~~~~~~~~~~~~rv~i~pi~D 76 (181)
T cd02168 2 LVYIGRFQPFHNGHLAVVLIALEKAKKVIILIGSARTAR----N-IKNPWTSEEREVMIEAALSDAGADLARVHFRPLRD 76 (181)
T ss_pred eEEeeccCCCCHHHHHHHHHHHHHCCeEEEEeCCCCCCC----C-CCCCcCHHHHHHHHHHHHhccCCCcceEEEEecCC
Confidence 4789999999999999999998876654432 211111 1 12457889999887663 21234677777643
Q ss_pred cccccCCCCHHHHHHHH---HHhh---CccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcceeccCCCCCcccC
Q 016934 181 QFSSVRHLSPQQFVEKL---SREL---GVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDC 254 (380)
Q Consensus 181 ~Fa~i~~ls~e~Fie~L---~~~L---~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~~~~ 254 (380)
.. ...+-.+..+ +... +++.+++|.|.. ++.-.++.+ .+.+ ...++..
T Consensus 77 ~~-----~~~~~W~~~v~~~v~~~~~~~~~i~~~g~~kd------~~~~~~~lf-pe~~--~~~~p~~------------ 130 (181)
T cd02168 77 HL-----YSDNLWLAEVQQQVLEIAGGSASVGLVGHRKD------ASSYYLRSF-PQWD--YLEVPNY------------ 130 (181)
T ss_pred CC-----CChHHHHHHHHHhChHhhCCCCcEEEeCCccC------CCccceeec-CCcC--eecCccc------------
Confidence 21 1222233222 2221 557788886652 233333222 2212 1122211
Q ss_pred CCCccCCccchHHHHHHHHcC
Q 016934 255 NDSKERGQVSSTRVRQALAMG 275 (380)
Q Consensus 255 ~~~~~~~~ISST~IR~~L~~G 275 (380)
..||||.||+++.+|
T Consensus 131 ------~~iSsT~IR~~i~~~ 145 (181)
T cd02168 131 ------PDLNATDIRRAYFEG 145 (181)
T ss_pred ------cccCHHHHHHHHHhc
Confidence 359999999999985
No 56
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=98.48 E-value=3.6e-06 Score=80.39 Aligned_cols=163 Identities=16% Similarity=0.171 Sum_probs=81.0
Q ss_pred EEEeecCccCHHHHHHHHHHHHh-C---CCEEEeecCcccccccCCCCCCCChHHHHHHHHhcCCccCeEEEEecccccc
Q 016934 108 VALGKFDALHIGHRELAIQASKI-G---APYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQIQFS 183 (380)
Q Consensus 108 vtIG~FDGvHlGHq~LI~~A~~~-g---~~~VvtF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD~vv~~~F~~~Fa 183 (380)
+.-|.||.+|.||..+++.|.+. . ...|..+..|...-. . ...+.+.++|+++++..-.....+.+-+++.+-.
T Consensus 26 i~GGSFdP~H~gHl~ia~~a~~~l~~d~~~~v~~~~~P~~~~~-~-k~~~~~~~~Rl~Ml~lai~~~~~~~V~~~E~~~~ 103 (236)
T PLN02945 26 VATGSFNPPTYMHLRMFELARDALMSEGYHVLGGYMSPVNDAY-K-KKGLASAEHRIQMCQLACEDSDFIMVDPWEARQS 103 (236)
T ss_pred EEcCCCCCCcHHHHHHHHHHHHHHhhcCcEEEEEEECCCCccc-c-cCCCCCHHHHHHHHHHHhcCCCCeEecHHHhCCC
Confidence 33479999999999999988764 2 223433333321110 1 1246788999998865422233444444443322
Q ss_pred ccCCCCHHHHHHHHHHhhC---------c-cEEEEcCCC--CCCCCCCCCHHHHHHHHhhcCcEEEEEcceeccCC--CC
Q 016934 184 SVRHLSPQQFVEKLSRELG---------V-RGVVAGENY--RFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQ--DS 249 (380)
Q Consensus 184 ~i~~ls~e~Fie~L~~~L~---------v-k~IVVG~DF--rFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~--~~ 249 (380)
.. .-+. +-++.|.+.++ . -.+++|.|- +|=..+.+.-...+++.+..+ +.++.+-...-. ..
T Consensus 104 ~~-syT~-dtL~~l~~~~~~~~~~~~~~~~~~fiiG~D~l~~l~~~~~W~~~~~~~l~~~~~--~vV~~R~g~~~~~~~~ 179 (236)
T PLN02945 104 TY-QRTL-TVLARVETSLNNNGLASEESVRVMLLCGSDLLESFSTPGVWIPDQVRTICRDYG--VVCIRREGQDVEKLVS 179 (236)
T ss_pred CC-ccHH-HHHHHHHHHhccccccCCCCceEEEEechhHHHhcCCCCcCCHHHHHHHHHhCC--EEEEeCCCCCHHHHhh
Confidence 10 0122 33444455552 2 279999995 332212233233334445443 445544211000 00
Q ss_pred C------cccC---CCCccCCccchHHHHHHHHcCC
Q 016934 250 R------DIDC---NDSKERGQVSSTRVRQALAMGD 276 (380)
Q Consensus 250 ~------~~~~---~~~~~~~~ISST~IR~~L~~Gd 276 (380)
+ .... .+......||||.||+.|++|.
T Consensus 180 ~~~~l~~~~~~i~~~~~~~~~~ISST~IR~~l~~g~ 215 (236)
T PLN02945 180 QDEILNENRGNILVVDDLVPNSISSTRVRECISRGL 215 (236)
T ss_pred cchhhhhCcCCEEEecccccccccHHHHHHHHHcCC
Confidence 0 0000 0011124699999999999884
No 57
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT). Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....
Probab=98.46 E-value=5.5e-07 Score=77.29 Aligned_cols=66 Identities=21% Similarity=0.203 Sum_probs=40.3
Q ss_pred EEEeecCccCHHHHHHHHHHHHhCCC--EE-E-eecCcccccccCCCCCCCChHHHHHHHHhcCCccCeEEEEec
Q 016934 108 VALGKFDALHIGHRELAIQASKIGAP--YL-L-SFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEF 178 (380)
Q Consensus 108 vtIG~FDGvHlGHq~LI~~A~~~g~~--~V-v-tF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD~vv~~~F 178 (380)
+..|.||.+|.||..++++|++.+.. ++ + +..+|.+ ...++++.++|+++++..-...+.+.+.++
T Consensus 1 l~~GsFdP~H~GH~~~l~~a~~~~~~~~vi~v~~~~~~~k-----~~~~~~~~~~R~~ml~~~~~~~~~i~v~~~ 70 (157)
T PF01467_consen 1 LFGGSFDPPHNGHLNLLREARELFDEDLVIVVPSDNSPHK-----DKKPIFSFEERLEMLRAAFKDDPNIEVDDW 70 (157)
T ss_dssp EEEE--TT--HHHHHHHHHHHHHSSESEEEEEEEEHHCHS-----TTSSSSTHHHHHHHHHHHHTTCTTEEEEEE
T ss_pred CeeeEcCcccHHHHHHHHHHHHhccccccccccccccccc-----cccccCcHHHHHHHHHHHHhhcCCccccch
Confidence 46799999999999999999988654 22 2 2222322 112678999999998876433344444333
No 58
>PLN02660 pantoate--beta-alanine ligase
Probab=98.41 E-value=4.5e-07 Score=89.04 Aligned_cols=65 Identities=18% Similarity=0.093 Sum_probs=53.7
Q ss_pred ceEEEEeecCccCHHHHHHHHHHHHhCCCEEEeecC-cccccccCC--CCCCCChHHHHHHHHhcCCccCeEEE
Q 016934 105 GGIVALGKFDALHIGHRELAIQASKIGAPYLLSFIG-MAEVFGWEP--RAPIVAKCDRKRVLSSWAPYCGNVAP 175 (380)
Q Consensus 105 ~~vvtIG~FDGvHlGHq~LI~~A~~~g~~~VvtF~~-P~~vl~~~~--~~~l~s~~~R~~lL~~lg~~vD~vv~ 175 (380)
+-|+|+|+ +|.|||+||++|++.+..+|+||++ |.. |.+.. ...+.+.+++.++|+.+| ||.++.
T Consensus 24 gfVpTmG~---LH~GH~~LI~~a~~~a~~vVvTffvnP~q-f~~~ed~~~yp~tle~d~~ll~~~G--VD~vf~ 91 (284)
T PLN02660 24 ALVPTMGY---LHEGHLSLVRAARARADVVVVSIYVNPGQ-FAPGEDLDTYPRDFDGDLRKLAALG--VDAVFN 91 (284)
T ss_pred EEEEcCch---hhHHHHHHHHHHHHhCCEEEEEEeCChHH-cCCccccccCCCCHHHHHHHHHHcC--CCEEEC
Confidence 67899999 9999999999999988778899997 887 54322 234678899999999999 787653
No 59
>cd09286 NMNAT_Eukarya Nicotinamide/nicotinate mononucleotide adenylyltransferase, Eukaryotic. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis. This subfamily consists strictly of eukaryotic members and includes secondary structural elements not found in all NMNATs.
Probab=98.35 E-value=1.5e-05 Score=75.84 Aligned_cols=162 Identities=14% Similarity=0.167 Sum_probs=82.6
Q ss_pred EEEeecCccCHHHHHHHHHHHHh-CC----CEEE-eecCcccccccCCCCCCCChHHHHHHHHhcCCccCeEEEEecccc
Q 016934 108 VALGKFDALHIGHRELAIQASKI-GA----PYLL-SFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQIQ 181 (380)
Q Consensus 108 vtIG~FDGvHlGHq~LI~~A~~~-g~----~~Vv-tF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD~vv~~~F~~~ 181 (380)
+.-|+||.+|.||+.++++|.+. .. .++. .+.| .... +. ...+.+.++|+++++..-.+...+.+.+++..
T Consensus 4 ~~gGSFdPiH~gHl~ia~~a~~~l~~~~~~~~v~~~~~P-~~~~-~~-k~~~~~~~~Rl~Ml~lai~~~~~~~v~~~E~~ 80 (225)
T cd09286 4 LACGSFNPITNMHLRMFELARDHLHETGRYEVVGGIISP-VNDA-YG-KKGLASAKHRVAMCRLAVQSSDWIRVDDWESL 80 (225)
T ss_pred EeCcCcCCCcHHHHHHHHHHHHHHHhhcCceeEEEEEEe-eccC-CC-CCCCCCHHHHHHHHHHHHccCCCEEEEehhcc
Confidence 44599999999999999998764 21 1221 1222 1110 11 13466888999988754223556666666542
Q ss_pred ccccCCCCHHHHHHHHHHhhC--------------------c-cEEEEcCCCC--CCCCCCCCHHHHHHHHhhcCcEEEE
Q 016934 182 FSSVRHLSPQQFVEKLSRELG--------------------V-RGVVAGENYR--FGYKAAGDASELVRLCEEYGMDACI 238 (380)
Q Consensus 182 Fa~i~~ls~e~Fie~L~~~L~--------------------v-k~IVVG~DFr--FG~~r~Gd~~~Lk~l~~~~G~~v~i 238 (380)
-.. ....-+-++.+.+.+. . -.+++|.|-- |...+.+.....+++.+..+ +.+
T Consensus 81 ~~~--~syT~~TL~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~fiiG~D~l~~l~~~~~W~~~~~e~ll~~~~--~vv 156 (225)
T cd09286 81 QPE--WMRTAKVLRHHREEINNKYGGIEGAAKRVLDGSRREVKIMLLCGADLLESFGIPGLWKDADLEEILGEFG--LVV 156 (225)
T ss_pred CCc--cccHHHHHHHHHHHhcccccccccccccccccccCCceEEEEecHhHHHhcCCCCcCCHHHHHHHHHhCC--EEE
Confidence 211 1112234555655553 2 2689999953 33222233222344444433 445
Q ss_pred EcceeccCCC----------C-CcccCCCCccCCccchHHHHHHHHcCC
Q 016934 239 INSVMDKHQD----------S-RDIDCNDSKERGQVSSTRVRQALAMGD 276 (380)
Q Consensus 239 V~~v~~~~~~----------~-~~~~~~~~~~~~~ISST~IR~~L~~Gd 276 (380)
+++-...-.. . .+........-..||||.||++++.|+
T Consensus 157 ~~R~g~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~ISST~IR~~l~~g~ 205 (225)
T cd09286 157 VERTGSDPENFIASSDILRKYQDNIHLVKDWIPNDISSTKVRRALRRGM 205 (225)
T ss_pred EeCCCCCHHHhhhccchhHHhhCCEEEEecCcccccChHHHHHHHHcCC
Confidence 5442111000 0 000000000012699999999999884
No 60
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=98.33 E-value=5.7e-06 Score=81.29 Aligned_cols=156 Identities=19% Similarity=0.197 Sum_probs=108.1
Q ss_pred EEEEeecCccCHHHHHHHHHHHHhCCCEEEeecCcccccccCCCCCCCChHHHHHHHHhcCCccCeEEEE----------
Q 016934 107 IVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPV---------- 176 (380)
Q Consensus 107 vvtIG~FDGvHlGHq~LI~~A~~~g~~~VvtF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD~vv~~---------- 176 (380)
...+=+-..+-+|||.|+++|.+.+..+= .|. . ..+..+++.++|+++++.--.+++++.+.
T Consensus 148 gaIVMNANPFTLGH~YLVEqAaaqcDwlH-LFv-----V--~eD~S~f~y~~R~~Lv~~G~~~l~Nvt~HsgsdYiISrA 219 (352)
T COG3053 148 GAIVMNANPFTLGHRYLVEQAAAQCDWLH-LFV-----V--KEDSSLFPYEDRLDLVKKGTADLPNVTVHSGSDYIISRA 219 (352)
T ss_pred EEEEEeCCCccchhHHHHHHHHhhCCEEE-EEE-----E--ecccccCCHHHHHHHHHHhhccCCceEEecCCCeEEEec
Confidence 33444788999999999999988775421 121 1 12345788899999876633345555442
Q ss_pred ecccccc--------ccCCCCHHHHHHHHHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcC-----cEEEEEccee
Q 016934 177 EFQIQFS--------SVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYG-----MDACIINSVM 243 (380)
Q Consensus 177 ~F~~~Fa--------~i~~ls~e~Fie~L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G-----~~v~iV~~v~ 243 (380)
.|---|- .-..++.+-|-+.+.+.||+.+..||+.-.+--.+..|-. +.++.++-+ ++|.++++.+
T Consensus 220 TFP~YFiKeq~vv~~s~t~iDl~iFr~~iA~aLgIThRfVG~EP~c~vT~~YNq~-M~~~L~~~~~~~p~I~vvei~Rk~ 298 (352)
T COG3053 220 TFPAYFIKEQSVVNDSQTEIDLKIFRKYIAPALGITHRFVGTEPFCRVTAIYNQQ-MRYWLEDPTISAPPIEVVEIERKK 298 (352)
T ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCcceeeecCCCCcHHHHHHHHH-HHHHHhccCCCCCceEEEEeehhh
Confidence 1211110 0135677778877889999999999998766554555533 345556666 8899998876
Q ss_pred ccCCCCCcccCCCCccCCccchHHHHHHHHcCCchhhhhhcc
Q 016934 244 DKHQDSRDIDCNDSKERGQVSSTRVRQALAMGDMKYVSELLG 285 (380)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~ISST~IR~~L~~GdI~~An~LLG 285 (380)
.++ ..||.|++|++|+++|++..+.|+.
T Consensus 299 ~~~--------------~~ISAS~VR~~l~~~~~~~ia~lVP 326 (352)
T COG3053 299 YQE--------------MPISASRVRQLLAKNDLEAIANLVP 326 (352)
T ss_pred hcC--------------CcccHHHHHHHHHhCCHHHHHhhCc
Confidence 653 7899999999999999999888764
No 61
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=98.32 E-value=8.2e-06 Score=81.89 Aligned_cols=137 Identities=14% Similarity=0.159 Sum_probs=84.4
Q ss_pred CceEEEEeecCccCHHHHHHHHHHHHhCCCEEE--eecCcccccccCCCCCCCChHHHHHHHHhcCCcc--CeEEEEecc
Q 016934 104 AGGIVALGKFDALHIGHRELAIQASKIGAPYLL--SFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYC--GNVAPVEFQ 179 (380)
Q Consensus 104 ~~~vvtIG~FDGvHlGHq~LI~~A~~~g~~~Vv--tF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~v--D~vv~~~F~ 179 (380)
...++.+|.||.+|.||..++++|.+....+++ +..++.. .. ...++..+|.++++..-.++ ..+.++|+.
T Consensus 6 ~~~~~~~G~F~P~H~GHl~~i~~a~~~~d~l~v~i~s~~~~~----~~-~~~~~~~~R~~mi~~~~~~~~~~r~~~~pi~ 80 (340)
T PRK05379 6 YDYLVFIGRFQPFHNGHLAVIREALSRAKKVIVLIGSADLAR----SI-KNPFSFEERAQMIRAALAGIDLARVTIRPLR 80 (340)
T ss_pred ceEEEEeeccCCCCHHHHHHHHHHHHHCCEEEEEEccCCCCC----cC-CCCCCHHHHHHHHHHHhhcCCCceEEEEECC
Confidence 457799999999999999999999988766443 2222111 11 23478899998877653223 366777764
Q ss_pred ccccccCCCCHHHHHHH---HHHh---hCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcceeccCCCCCccc
Q 016934 180 IQFSSVRHLSPQQFVEK---LSRE---LGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDID 253 (380)
Q Consensus 180 ~~Fa~i~~ls~e~Fie~---L~~~---L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~~~ 253 (380)
..+ .+.+-.+.. ++.. -+++.+++|+|.. .|.-.++ +..+.|.. .++ +
T Consensus 81 d~~-----~~~~~W~~~v~~~v~~~~~~~~~~~~~g~~~~------~~~~~~~-~f~~~~~~--~~~-----~------- 134 (340)
T PRK05379 81 DSL-----YNDSLWLAEVQAAVAEHAGADARIGLIGHEKD------ASSYYLR-SFPQWELV--DVP-----N------- 134 (340)
T ss_pred CCC-----cChHHHHHHHHHHHHhccCCCCcEEEECCcCC------CChHHHH-hccccccc--cCC-----c-------
Confidence 431 122333332 2222 3668888887762 2555554 33444433 222 1
Q ss_pred CCCCccCCccchHHHHHHHHcCCc
Q 016934 254 CNDSKERGQVSSTRVRQALAMGDM 277 (380)
Q Consensus 254 ~~~~~~~~~ISST~IR~~L~~GdI 277 (380)
...+|||.||+++..|+-
T Consensus 135 ------~~~~s~T~iR~~~~~~~~ 152 (340)
T PRK05379 135 ------TEDLSATEIRDAYFEGRI 152 (340)
T ss_pred ------ccccCccHHHHHHHcCCC
Confidence 256999999999998874
No 62
>PRK13671 hypothetical protein; Provisional
Probab=98.28 E-value=1.1e-05 Score=80.03 Aligned_cols=103 Identities=12% Similarity=0.196 Sum_probs=76.2
Q ss_pred EEeecCccCHHHHHHHHHHHHh-CCC-EE--EeecCcccccccCCCCCCCChHHHHHHHHhcCCccCeEEEEeccccccc
Q 016934 109 ALGKFDALHIGHRELAIQASKI-GAP-YL--LSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQIQFSS 184 (380)
Q Consensus 109 tIG~FDGvHlGHq~LI~~A~~~-g~~-~V--vtF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD~vv~~~F~~~Fa~ 184 (380)
.|-.||.+|.||..++++|++. +.. ++ ++-++|. .+.+.+++..+|.+++...| +|.|+-+||. |+
T Consensus 5 IIaeFNP~H~GHl~~~~~a~~~~~~d~vi~vpSg~~~q-----rg~pa~~~~~~R~~ma~~~G--~DLViELP~~--~a- 74 (298)
T PRK13671 5 IIAEYNPFHNGHIYQINYIKNKFPNEKIIVILSGKYTQ-----RGEIAVASFEKRKKIALKYG--VDKVIKLPFE--YA- 74 (298)
T ss_pred EEeeeCCccHHHHHHHHHHHHhcCCCEEEEEECcCCCC-----CCCCCCCCHHHHHHHHHHcC--CCEEEeccHH--HH-
Confidence 4568999999999999999986 333 32 2222211 22345679999999999988 9999988875 44
Q ss_pred cCCCCHHHHHHH---HHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHh
Q 016934 185 VRHLSPQQFVEK---LSRELGVRGVVAGENYRFGYKAAGDASELVRLCE 230 (380)
Q Consensus 185 i~~ls~e~Fie~---L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~ 230 (380)
-.+++.|..- ++..++++.++-|.+. ||++.|+++++
T Consensus 75 --~~sAe~FA~gaV~lL~~lgvd~l~FGsE~-------~d~~~l~~~a~ 114 (298)
T PRK13671 75 --TQAAHIFAKGAIKKLNKEKIDKLIFGSES-------NDIELMYKIAN 114 (298)
T ss_pred --hhchHHHHHHHHHHHHHcCCCEEEECCCC-------CCHHHHHHHHH
Confidence 3688999863 7889999999988774 57777776663
No 63
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Probab=98.25 E-value=5.4e-06 Score=74.39 Aligned_cols=129 Identities=23% Similarity=0.278 Sum_probs=76.8
Q ss_pred eEEEEeecCccCHHHHHHHHHHHHhCCCE--EEeecCcccccccCCCCCCCChHHHHHH----HHhcCCccCeEEEEecc
Q 016934 106 GIVALGKFDALHIGHRELAIQASKIGAPY--LLSFIGMAEVFGWEPRAPIVAKCDRKRV----LSSWAPYCGNVAPVEFQ 179 (380)
Q Consensus 106 ~vvtIG~FDGvHlGHq~LI~~A~~~g~~~--VvtF~~P~~vl~~~~~~~l~s~~~R~~l----L~~lg~~vD~vv~~~F~ 179 (380)
.++.-|.||-+|.||++||+.|.+.|..+ -+|.|.. ........+.+.+.|.+- |.......+. +.+.+
T Consensus 7 ~vavGGTFd~LH~GHk~LL~~A~~~G~~v~IGlTsDe~---~k~~k~~~i~p~~~R~~~l~~fl~~~~~~~~~--iv~i~ 81 (158)
T COG1019 7 KVAVGGTFDRLHDGHKKLLEVAFEIGDRVTIGLTSDEL---AKKKKKEKIEPYEVRLRNLRNFLESIKADYEE--IVPID 81 (158)
T ss_pred EEEecccchhhhhhHHHHHHHHHHhCCeEEEEEccHHH---HHHhccccCCcHHHHHHHHHHHHHHhcCCcce--EEEec
Confidence 34667999999999999999999998653 3787752 211122345566666543 4444433332 33333
Q ss_pred ccccccCCCCHHHHHHHHHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcC---cEEEEEcceeccCCCCCcccCCC
Q 016934 180 IQFSSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYG---MDACIINSVMDKHQDSRDIDCND 256 (380)
Q Consensus 180 ~~Fa~i~~ls~e~Fie~L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G---~~v~iV~~v~~~~~~~~~~~~~~ 256 (380)
..+-- ..... ....|||-..=.-| +..+.+.-++.| .++++|+.+..+
T Consensus 82 Dp~G~--t~~~~----------~~e~iVVS~ET~~~------Al~IN~~R~~~Gl~pL~I~~i~~v~ae----------- 132 (158)
T COG1019 82 DPYGP--TVEDP----------DFEAIVVSPETYPG------ALKINEIREKRGLPPLEIIVIDYVLAE----------- 132 (158)
T ss_pred CCCCC--CCCcC----------ceeEEEEccccchh------HHHHHHHHHHCCCCCeEEEEEehhhhh-----------
Confidence 33320 01111 23667776553322 344455555777 567888877543
Q ss_pred CccCCccchHHHHH
Q 016934 257 SKERGQVSSTRVRQ 270 (380)
Q Consensus 257 ~~~~~~ISST~IR~ 270 (380)
++.+||||+||+
T Consensus 133 --dg~~iSSTrIrr 144 (158)
T COG1019 133 --DGKPISSTRIRR 144 (158)
T ss_pred --cCCccchhhhhh
Confidence 367999999985
No 64
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=98.21 E-value=4.1e-05 Score=76.40 Aligned_cols=69 Identities=23% Similarity=0.131 Sum_probs=48.3
Q ss_pred eEEEEeecCccCHHHHHHHHHHHHhCCCEEE--eecCcccccccCCCCCCCChHHHHHHHHhcCCccCe-EEEEecc
Q 016934 106 GIVALGKFDALHIGHRELAIQASKIGAPYLL--SFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGN-VAPVEFQ 179 (380)
Q Consensus 106 ~vvtIG~FDGvHlGHq~LI~~A~~~g~~~Vv--tF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD~-vv~~~F~ 179 (380)
.++..|.||.+|.||..++++|.+....+++ +-.+|. ....+.++.++|.++++..-..... +.+..+.
T Consensus 3 i~i~~GsFdP~H~GHl~ii~~a~~~~d~v~v~~~~~~~~-----~~~~~~~~~~~R~~~l~~~~~~~~~~v~v~~~~ 74 (325)
T TIGR01526 3 IGVVFGKFYPLHTGHIYLIYEAFSKVDELHIVVGSLFYD-----SKAKRPPPVQDRLRWLREIFKYQKNQIFIHHLN 74 (325)
T ss_pred EEEEeeccCCCCHHHHHHHHHHHHHCCEEEEEECCCCcC-----ccCCCCCCHHHHHHHHHHHhccCCCeEEEEEcC
Confidence 5688999999999999999999988655432 211110 0124567999999999876444566 6666665
No 65
>TIGR00339 sopT ATP sulphurylase. Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus.
Probab=98.17 E-value=6e-05 Score=77.13 Aligned_cols=161 Identities=17% Similarity=0.215 Sum_probs=97.4
Q ss_pred ceEEEEeecCccCHHHHHHHHHHHHh-C-CCEEEeecCcccccccCCCCCCCChHHHHHHHHhcCCcc---CeE--EEEe
Q 016934 105 GGIVALGKFDALHIGHRELAIQASKI-G-APYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYC---GNV--APVE 177 (380)
Q Consensus 105 ~~vvtIG~FDGvHlGHq~LI~~A~~~-g-~~~VvtF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~v---D~v--v~~~ 177 (380)
..|+++=.||.+|+||.+|++.|.+. + ..+++.+.. .+. ....++.+.|.+.++.+-... |.+ .+++
T Consensus 184 ~~Vvafqt~nPiHr~H~~l~~~a~e~l~~d~lll~P~~-----g~~-k~~~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~ 257 (383)
T TIGR00339 184 DTVVAFQTRNPMHRAHEELTKRAARSLPNAGVLVHPLV-----GLT-KPGDIPAEVRMRAYEVLKEGYPNPERVMLTFLP 257 (383)
T ss_pred CeEEEeccCCCCchHHHHHHHHHHHHcCCCeEEEEeCC-----CCC-CCCCCCHHHHHHHHHHHHhhCCCCCceEEEecc
Confidence 57899999999999999999999876 3 334444321 111 123567788888766653222 233 3344
Q ss_pred ccccccccCCCCHHHHHHH--HHHhhCccEEEEcCCCCCCCC------CCCCHHHHHHHH----hhcCcEEEEEcceecc
Q 016934 178 FQIQFSSVRHLSPQQFVEK--LSRELGVRGVVAGENYRFGYK------AAGDASELVRLC----EEYGMDACIINSVMDK 245 (380)
Q Consensus 178 F~~~Fa~i~~ls~e~Fie~--L~~~L~vk~IVVG~DFrFG~~------r~Gd~~~Lk~l~----~~~G~~v~iV~~v~~~ 245 (380)
+...++ .|.+-+.. +.+++++.++++|.|.- |-+ .=.+...-+++. .+.|+++..++...+-
T Consensus 258 ~em~~a-----gpreall~Aiir~nyG~th~IiG~Dha-g~g~~~~~~~~Y~~~~aq~i~~~~~~~l~I~~v~~~~~~Yc 331 (383)
T TIGR00339 258 LAMRYA-----GPREAIWHAIIRKNYGATHFIVGRDHA-GPGSNSKGQDFYGPYDAQELFEKYKAELGIKIVPFEHVAYC 331 (383)
T ss_pred hHhhcC-----CcHHHHHHHHHHHHCCCCEEEECCCCC-CCCCCCccccCCCcchHHHHHHhCccccCceEEecceeEEE
Confidence 444443 35566655 66789999999999872 332 112222333333 5677877666655443
Q ss_pred CC--CC--CcccCCCCccCCccchHHHHHHHHcCCc
Q 016934 246 HQ--DS--RDIDCNDSKERGQVSSTRVRQALAMGDM 277 (380)
Q Consensus 246 ~~--~~--~~~~~~~~~~~~~ISST~IR~~L~~GdI 277 (380)
.+ .. ..+-|-.......+|.|.||++|++|..
T Consensus 332 ~~c~~~~~~~~cph~~~~~~~~sgt~ir~~L~~G~~ 367 (383)
T TIGR00339 332 PDEDEYAPADQAGHTNLRTLNISGTKLRGMLREGVF 367 (383)
T ss_pred cccCcEeecccCCCCccceeeeCHHHHHHHHHCCCC
Confidence 22 11 1122222223468999999999999975
No 66
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=98.16 E-value=3.3e-06 Score=70.35 Aligned_cols=56 Identities=20% Similarity=0.117 Sum_probs=41.1
Q ss_pred EEEEeecCccCHHHHHHHHHHHHhCCCEEEeecC-cccccccCCCCCCCChHHHHHHHHhc
Q 016934 107 IVALGKFDALHIGHRELAIQASKIGAPYLLSFIG-MAEVFGWEPRAPIVAKCDRKRVLSSW 166 (380)
Q Consensus 107 vvtIG~FDGvHlGHq~LI~~A~~~g~~~VvtF~~-P~~vl~~~~~~~l~s~~~R~~lL~~l 166 (380)
+++.|.||++|+||+.++++|.+.+..+++.+.. |... +..++.+.++|.+.++.+
T Consensus 2 ~~~~G~Fdp~H~GH~~l~~~a~~~~d~~i~~i~~~~~~~----~~~~~~~~~~R~~~l~~~ 58 (105)
T cd02156 2 ARFPGEPGYLHIGHAKLICRAKGIADQCVVRIDDNPPVK----VWQDPHELEERKESIEED 58 (105)
T ss_pred EEeCCCCCCCCHHHHHHHHHHHHhCCcEEEEEcCCCccc----ccCChHHHHHHHHHHHHH
Confidence 5789999999999999999999988667776664 3321 112356677777777653
No 67
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=97.99 E-value=5.9e-05 Score=68.11 Aligned_cols=133 Identities=22% Similarity=0.290 Sum_probs=84.4
Q ss_pred eEEEEeecCccCHHHHHHHHHHHHhCCCEEE-eecCcccccccCCCCCCCChHHHHHHHHhcCCccCeEEEEeccccccc
Q 016934 106 GIVALGKFDALHIGHRELAIQASKIGAPYLL-SFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQIQFSS 184 (380)
Q Consensus 106 ~vvtIG~FDGvHlGHq~LI~~A~~~g~~~Vv-tF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD~vv~~~F~~~Fa~ 184 (380)
.++.=|.||.++.||.-+|++|.+.=..+++ ...+|. ..|+++.++|.++++....+.++|-+..|+.
T Consensus 4 iavypGSFDPiTnGHlDii~RA~~~Fd~viVaV~~np~-------K~plFsleER~~l~~~~~~~l~nV~V~~f~~---- 72 (159)
T COG0669 4 IAVYPGSFDPITNGHLDIIKRASALFDEVIVAVAINPS-------KKPLFSLEERVELIREATKHLPNVEVVGFSG---- 72 (159)
T ss_pred eEEeCCCCCCCccchHHHHHHHHHhccEEEEEEEeCCC-------cCCCcCHHHHHHHHHHHhcCCCceEEEeccc----
Confidence 4577799999999999999999887544332 222222 2578999999999988655677877766642
Q ss_pred cCCCCHHHHHHHHHHhhCccEEEEcCCCCCCCCCCCCHHHHHHH---Hhhc--CcEEEEEcceeccCCCCCcccCCCCcc
Q 016934 185 VRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRL---CEEY--GMDACIINSVMDKHQDSRDIDCNDSKE 259 (380)
Q Consensus 185 i~~ls~e~Fie~L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l---~~~~--G~~v~iV~~v~~~~~~~~~~~~~~~~~ 259 (380)
++-.+.++.+++.+|=| -....|.++=-++ -++. +++...+.+-. +
T Consensus 73 --------Llvd~ak~~~a~~ivRG------LR~~sDfeYE~qma~~N~~L~~eveTvFl~~s~---------------~ 123 (159)
T COG0669 73 --------LLVDYAKKLGATVLVRG------LRAVSDFEYELQMAHMNRKLAPEVETVFLMPSP---------------E 123 (159)
T ss_pred --------HHHHHHHHcCCCEEEEe------ccccchHHHHHHHHHHHHhhcccccEEEecCCc---------------c
Confidence 33335677889888875 2333344332111 1122 34444443311 1
Q ss_pred CCccchHHHHHHHH-cCCch
Q 016934 260 RGQVSSTRVRQALA-MGDMK 278 (380)
Q Consensus 260 ~~~ISST~IR~~L~-~GdI~ 278 (380)
-.-||||.+|+... .||+.
T Consensus 124 ~~~iSSs~Vreia~~ggdvs 143 (159)
T COG0669 124 YSFISSSLVREIAAFGGDVS 143 (159)
T ss_pred eehhhHHHHHHHHHhCCCch
Confidence 25799999999766 45554
No 68
>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism]
Probab=97.54 E-value=0.00028 Score=69.99 Aligned_cols=110 Identities=16% Similarity=0.239 Sum_probs=79.5
Q ss_pred ceEEEEeecCccCHHHHHHHHHHHHhCCCEEEeecCcccccccCCCCCCCChHHHHHHHHhcCCccCeEEE-Eecccccc
Q 016934 105 GGIVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAP-VEFQIQFS 183 (380)
Q Consensus 105 ~~vvtIG~FDGvHlGHq~LI~~A~~~g~~~VvtF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD~vv~-~~F~~~Fa 183 (380)
.-|.+=|.||=+|-||-..|.+|++.|.++++--..- +-+..+.-+|+++.++|-++.+... |||.||. -||.
T Consensus 9 ~rVw~DGCfDm~HyGHanaLrQAkalGdkLivGVHsD-eeI~~nKGpPV~t~eERy~~v~~ik-WVDEVV~~APyv---- 82 (358)
T KOG2803|consen 9 VRVWADGCFDMVHYGHANALRQAKALGDKLIVGVHSD-EEITLNKGPPVFTDEERYEMVKAIK-WVDEVVEGAPYV---- 82 (358)
T ss_pred eeEEeccchhhhhhhhhHHHHHHHHhCCeEEEEecch-HHHHhcCCCCcccHHHHHHHHhhcc-hhhhhhcCCCee----
Confidence 3578999999999999999999999998865432211 1122344568999999999999886 7998874 2331
Q ss_pred ccCCCCHHHHHHHHHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHH
Q 016934 184 SVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLC 229 (380)
Q Consensus 184 ~i~~ls~e~Fie~L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~ 229 (380)
+-.++ +++++++.+|=|.|-.--.++.-.+...++.+
T Consensus 83 -----tt~~~----md~y~cd~vvHGdDit~~a~G~D~Y~~vK~ag 119 (358)
T KOG2803|consen 83 -----TTLEW----MDKYGCDYVVHGDDITLDADGLDCYRLVKAAG 119 (358)
T ss_pred -----ccHHH----HHHhCCeEEEeCCcceecCCCccHHHHHHHhc
Confidence 12233 36789999999999887777665555555444
No 69
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=97.21 E-value=0.0095 Score=55.96 Aligned_cols=72 Identities=14% Similarity=0.112 Sum_probs=44.8
Q ss_pred ceEEEEeecCccCHHHHHHHHHHHHhCCCEEEeecCcccccccCCCCCCCChHHHHHHHHhc-CC-ccCeEEEEecc
Q 016934 105 GGIVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSW-AP-YCGNVAPVEFQ 179 (380)
Q Consensus 105 ~~vvtIG~FDGvHlGHq~LI~~A~~~g~~~VvtF~~P~~vl~~~~~~~l~s~~~R~~lL~~l-g~-~vD~vv~~~F~ 179 (380)
...+.||-|..+|+||.++|++|.+....+||..-.-.. ...+ ..-++..+|..++... .. ....+.++|..
T Consensus 5 d~~v~iGRFQPfH~GHl~~I~~al~~~devII~IGSA~~--s~t~-~NPFTa~ER~~MI~~aL~e~~~~rv~~ipi~ 78 (196)
T PRK13793 5 DYLVFIGRFQPFHLAHMQTIEIALQQSRYVILALGSAQM--ERNI-KNPFLAIEREQMILSNFSLDEQKRIRFVHVV 78 (196)
T ss_pred eEEEEEecCCCCcHHHHHHHHHHHHhCCEEEEEEccCCC--CCCC-CCCCCHHHHHHHHHHhcchhhcceEEEEecC
Confidence 467999999999999999999999887766543321000 0011 2246777888776553 21 11255666643
No 70
>PRK04149 sat sulfate adenylyltransferase; Reviewed
Probab=97.07 E-value=0.024 Score=58.38 Aligned_cols=161 Identities=17% Similarity=0.210 Sum_probs=93.3
Q ss_pred ceEEEEeecCccCHHHHHHHHHHHHhCCCEEEeecCcccccccCCCCCCCChHHHHHHHHhcCC-c--cCeEEEEec--c
Q 016934 105 GGIVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAP-Y--CGNVAPVEF--Q 179 (380)
Q Consensus 105 ~~vvtIG~FDGvHlGHq~LI~~A~~~g~~~VvtF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~-~--vD~vv~~~F--~ 179 (380)
..|+++=.-+.+|+||.+|++.|.+.+.-+++.+ +.++. .+--++.+-|.+.++.+-. + -+.+++..| .
T Consensus 187 ~~VvafqTrnP~HraHe~l~~~a~e~~d~lll~p-----lvG~~-k~~di~~~~r~~~~~~~~~~y~p~~~v~l~~lp~~ 260 (391)
T PRK04149 187 KTVVAFQTRNPPHRAHEYLQKCALEIVDGLLLNP-----LVGET-KSGDIPAEVRMEAYEALLKNYYPKDRVLLSVTPAA 260 (391)
T ss_pred CeEEEeecCCCCchHHHHHHHHHHHhcCeEEEec-----CcCCC-CCCCCCHHHHHHHHHHHHHhcCCCCcEEEEeccch
Confidence 5788888899999999999999988765344433 22211 1123455556655444321 1 234444343 3
Q ss_pred ccccccCCCCHHHHH-HH-HHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHH-----hhcCcEEEEEcceeccCC--CC-
Q 016934 180 IQFSSVRHLSPQQFV-EK-LSRELGVRGVVAGENYRFGYKAAGDASELVRLC-----EEYGMDACIINSVMDKHQ--DS- 249 (380)
Q Consensus 180 ~~Fa~i~~ls~e~Fi-e~-L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~-----~~~G~~v~iV~~v~~~~~--~~- 249 (380)
..|+ .|.+=+ +- +-+++|+.+++||.|+. |-+.=.+...-+++. ++.|+++..++..-+..+ ..
T Consensus 261 mryA-----GPrEa~lhAivrkN~GcTh~IvGrDHA-G~g~~Y~~~~aq~i~~~~~~~~l~I~~v~~~~~~Yc~~c~~~~ 334 (391)
T PRK04149 261 MRYA-----GPREAIFHAIVRKNYGCTHFIVGRDHA-GVGDYYGPYDAQEIFDEFTEEELGITPLKFEEAFYCPKCGGMA 334 (391)
T ss_pred hccc-----CcHHHHHHHHHHHhCCCCeEEECCCCC-CccccCCCchHHHHHHhCCcccCCceEEecceeEEecCCCeEE
Confidence 3343 455533 44 45689999999999873 333223333333333 355666666555443322 11
Q ss_pred -CcccCCCCccCCccchHHHHHHHHcCCc
Q 016934 250 -RDIDCNDSKERGQVSSTRVRQALAMGDM 277 (380)
Q Consensus 250 -~~~~~~~~~~~~~ISST~IR~~L~~GdI 277 (380)
..+-|-...+...+|.|.||++|++|..
T Consensus 335 ~~~~cphg~~~~~~iSgt~iR~~L~~G~~ 363 (391)
T PRK04149 335 SEKTCPHGKEDRVHLSGTKVREMLREGEK 363 (391)
T ss_pred EcccCCCCCCceEeeCHHHHHHHHHCcCC
Confidence 1222322224568999999999999985
No 71
>PF01747 ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002650 This entry consists of sulphate adenylyltransferase or ATP-sulfurylase (2.7.7.4 from EC) some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase, IPR002891 from INTERPRO. Both enzymes are required for PAPS (phosphoadenosine-phosphosulphate) synthesis from inorganic sulphate []. ATP sulfurylase catalyses the synthesis of adenosine-phosphosulphate APS from ATP and inorganic sulphate [].; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0000103 sulfate assimilation; PDB: 3CR8_B 1M8P_C 1I2D_B 1JHD_A 1V47_B 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2GKS_B ....
Probab=97.00 E-value=0.022 Score=54.17 Aligned_cols=160 Identities=17% Similarity=0.229 Sum_probs=83.2
Q ss_pred ceEEEEeecCccCHHHHHHHHHHHHhC-CCEEEeecCcccccccCCCCCCCChHHHHHH----HHhcCCccCeEEEE--e
Q 016934 105 GGIVALGKFDALHIGHRELAIQASKIG-APYLLSFIGMAEVFGWEPRAPIVAKCDRKRV----LSSWAPYCGNVAPV--E 177 (380)
Q Consensus 105 ~~vvtIG~FDGvHlGHq~LI~~A~~~g-~~~VvtF~~P~~vl~~~~~~~l~s~~~R~~l----L~~lg~~vD~vv~~--~ 177 (380)
..|+++=.-+.+|++|.+|++.|.+.. .-++|.+ ++++. .+--++.+-|.+. ++.+-+ -+.+++. |
T Consensus 21 ~~VvafqtrnPlHraHe~l~~~a~e~~~~~lll~p-----lvG~~-k~~d~~~~~r~~~~~~~~~~y~p-~~~v~l~~lp 93 (215)
T PF01747_consen 21 RRVVAFQTRNPLHRAHEYLMRRALEKAGDGLLLHP-----LVGPT-KPGDIPYEVRVRCYEALIDNYFP-KNRVLLSPLP 93 (215)
T ss_dssp SSEEEEEESS---HHHHHHHHHHHHHHTSEEEEEE-----BESB--STTSCCHHHHHHHHHHHHHHCSS-TTGEEEEBBE
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhcCcEEEEe-----ccCCC-CcCCCCHHHHHHHHHHHHHHhCC-CCcEEEeccC
Confidence 467888889999999999999988774 3344544 22221 1123455556544 333111 2555553 4
Q ss_pred ccccccccCCCCHHHHH-HH-HHHhhCccEEEEcCCCCCCCCCCC---CHHH-HHHHHhhcCcEEEEEcceeccCCC--C
Q 016934 178 FQIQFSSVRHLSPQQFV-EK-LSRELGVRGVVAGENYRFGYKAAG---DASE-LVRLCEEYGMDACIINSVMDKHQD--S 249 (380)
Q Consensus 178 F~~~Fa~i~~ls~e~Fi-e~-L~~~L~vk~IVVG~DFrFG~~r~G---d~~~-Lk~l~~~~G~~v~iV~~v~~~~~~--~ 249 (380)
....|+ .|.+=+ +- +-+++|+.+++||.|.- |-+.-. ++.. +.++..+.|+++..++...+..+. .
T Consensus 94 ~~mr~a-----GPrEallhAiirkN~GcTh~IvGrdhA-g~g~~Y~~~~a~~i~~~~~~el~I~~v~~~~~~Yc~~~~~~ 167 (215)
T PF01747_consen 94 LPMRYA-----GPREALLHAIIRKNYGCTHFIVGRDHA-GVGDFYDPYEAQEIFDEYAGELGIEPVPFPEMVYCPKCGQY 167 (215)
T ss_dssp SB---S-----HHHHHHHHHHHHHHTT-SEEEE-TTTT--SCBSS-TTHHHHHHHHHHHHCTSEEEE---EEEETTTTEE
T ss_pred chhccc-----CcHHHHHHHHHHHHCCCceEEeCCcCC-CccccCCccHHHHHHHcCcccCCceEEecceEEEEcCCCeE
Confidence 344444 455544 33 45689999999999975 332222 2222 344567889998888776554321 1
Q ss_pred C--cccCCCCccCCccchHHHHHHHHcCCc
Q 016934 250 R--DIDCNDSKERGQVSSTRVRQALAMGDM 277 (380)
Q Consensus 250 ~--~~~~~~~~~~~~ISST~IR~~L~~GdI 277 (380)
. .+-|-.......||+|.||++|++|..
T Consensus 168 ~~~~~cp~~~~~~~~iSgt~ir~~L~~G~~ 197 (215)
T PF01747_consen 168 VSAKTCPHGKHHHISISGTEIRELLREGEE 197 (215)
T ss_dssp EECGGSSTTTGGGEE--HHHHHHHHHTT--
T ss_pred eeccccCCCCCcceeeCHHHHHHHHHCcCC
Confidence 1 111212222247999999999999974
No 72
>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism]
Probab=97.00 E-value=0.0053 Score=61.15 Aligned_cols=104 Identities=19% Similarity=0.348 Sum_probs=71.5
Q ss_pred CCCCCCCC--CceEEEEeecCccCHHHHHHHHHHHHhCCCEE--EeecCcccccccC-CCCCCCChHHHHHHHHhcCCcc
Q 016934 96 PAEGFSPV--AGGIVALGKFDALHIGHRELAIQASKIGAPYL--LSFIGMAEVFGWE-PRAPIVAKCDRKRVLSSWAPYC 170 (380)
Q Consensus 96 ~~~~~~~~--~~~vvtIG~FDGvHlGHq~LI~~A~~~g~~~V--vtF~~P~~vl~~~-~~~~l~s~~~R~~lL~~lg~~v 170 (380)
-+.|..+. ...|..-|.||-+|.||...|++|++.|.+.+ +..|. .|.... ...|+++.-+|.--+.++. +|
T Consensus 188 ~~~G~~p~p~~kvVYvdGaFDLFH~GHl~~Le~ak~lgdyLIvGI~~D~--~vneykgs~~PiMnl~ER~Lsvlack-yV 264 (358)
T KOG2803|consen 188 FSNGREPKPTDKVVYVDGAFDLFHAGHLDFLEKAKRLGDYLIVGIHTDQ--TVNEYKGSNYPIMNLHERVLSVLACK-YV 264 (358)
T ss_pred eecCCCCCCCCcEEEEcCchhhhccchHHHHHHHHhccCceEEEeecCc--chhhhccCCCccchHHHHHHHHhhhc-cc
Confidence 34555443 45778889999999999999999999998744 56654 121111 1247999988875555555 68
Q ss_pred CeEEE-EeccccccccCCCCHHHHHHHHHHhhCccEEEEcC--CCCCC
Q 016934 171 GNVAP-VEFQIQFSSVRHLSPQQFVEKLSRELGVRGVVAGE--NYRFG 215 (380)
Q Consensus 171 D~vv~-~~F~~~Fa~i~~ls~e~Fie~L~~~L~vk~IVVG~--DFrFG 215 (380)
|.|++ .|+.. ..+| ++.+++..++.|. ||+=.
T Consensus 265 deVvvGaP~~v---------~s~~----i~~~~~~~v~~g~~~~~~~~ 299 (358)
T KOG2803|consen 265 DEVVVGAPYEV---------TSEF----IKLFNIDKVAHGTIPDFRDP 299 (358)
T ss_pred ceEEEcCchhc---------cHHH----HHhcCceEEEEeccccccCc
Confidence 98887 56421 1244 4567999999999 66533
No 73
>KOG2804 consensus Phosphorylcholine transferase/cholinephosphate cytidylyltransferase [Lipid transport and metabolism]
Probab=96.86 E-value=0.0054 Score=60.80 Aligned_cols=145 Identities=21% Similarity=0.273 Sum_probs=88.3
Q ss_pred eEEEEeecCccCHHHHHHHHHHHHh--CCCEE--EeecCcccccccCCCCCCCChHHHHHHHHhcCCccCeEEEEecccc
Q 016934 106 GIVALGKFDALHIGHRELAIQASKI--GAPYL--LSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQIQ 181 (380)
Q Consensus 106 ~vvtIG~FDGvHlGHq~LI~~A~~~--g~~~V--vtF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD~vv~~~F~~~ 181 (380)
-|.|=|.||-+|.||..-|.||++. +...+ ++-|. -..... -...++..+|.+-|.-.. |||.|+.-
T Consensus 65 RVYADGIyDLFH~GHarqL~QaK~~FPNvyLiVGvc~De--~Thk~K-G~TVm~e~ERyE~lrHCr-yVDEVi~~----- 135 (348)
T KOG2804|consen 65 RVYADGIYDLFHYGHARQLEQAKKLFPNVYLIVGVCSDE--LTHKFK-GRTVMNENERYEALRHCR-YVDEVIPN----- 135 (348)
T ss_pred EEEccchHHHhhhhHHHHHHHHHHhCCCeEEEEeecCch--hhhhcc-CceecChHHHHHHhhhhh-hhhhhccC-----
Confidence 4688999999999999999999986 32222 22221 001111 123578889999998876 79988751
Q ss_pred ccccCCCCHHHHHHHHHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcceeccCCCCCcccCCCCccCC
Q 016934 182 FSSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERG 261 (380)
Q Consensus 182 Fa~i~~ls~e~Fie~L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~~~~~~~~~~~ 261 (380)
.-+-+++ +|+++ .+++ .|+=.|--+.. .+.+++-+..++.|+-+.. ... +
T Consensus 136 --APW~lt~-EFL~~----HKID-fVAHDdIPY~s---~gsdDiY~~vK~~G~F~~T---~RT----------------e 185 (348)
T KOG2804|consen 136 --APWTLTP-EFLEK----HKID-FVAHDDIPYVS---AGSDDIYKPVKEAGMFLPT---QRT----------------E 185 (348)
T ss_pred --CCccccH-HHHHh----cccc-eeeccCccccC---CCchhHHHHHHHhcccccc---ccc----------------C
Confidence 1223554 56653 3344 34556665553 2336666666777865422 112 4
Q ss_pred ccchHHHHHHHHcCCchhhhhhcceeee
Q 016934 262 QVSSTRVRQALAMGDMKYVSELLGRQHR 289 (380)
Q Consensus 262 ~ISST~IR~~L~~GdI~~An~LLGrpy~ 289 (380)
-||+|-|-..|-..-=..|.+=|.|-|+
T Consensus 186 GvSTSDiI~rIVrDYD~YvrRNL~RGys 213 (348)
T KOG2804|consen 186 GVSTSDIITRIVRDYDVYVRRNLARGYS 213 (348)
T ss_pred CccHHHHHHHHHHhHHHHHHhhhcccCC
Confidence 5899888776655555566666666554
No 74
>cd00517 ATPS ATP-sulfurylase. ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be
Probab=96.85 E-value=0.064 Score=54.61 Aligned_cols=160 Identities=19% Similarity=0.299 Sum_probs=93.0
Q ss_pred ceEEEEeecCccCHHHHHHHHHHHHhCC-C-EEEeecCcccccccCCCCCCCChHHHHHHHHhcC-Ccc--CeEEEEec-
Q 016934 105 GGIVALGKFDALHIGHRELAIQASKIGA-P-YLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWA-PYC--GNVAPVEF- 178 (380)
Q Consensus 105 ~~vvtIG~FDGvHlGHq~LI~~A~~~g~-~-~VvtF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg-~~v--D~vv~~~F- 178 (380)
..|+++=.-+.+|+||.+|++.|.+... . ++|.+ +.++. .+--++.+-|.+.++.+- .+. |.+++..|
T Consensus 157 ~~VvafqtrnP~HraHe~l~~~a~~~~~~~~lll~p-----lvG~~-k~~d~~~~~r~~~~~~l~~~y~~~~~~~l~~lp 230 (353)
T cd00517 157 RRVVAFQTRNPMHRAHEELMKRAAEKLLNDGLLLHP-----LVGWT-KPGDVPDEVRMRAYEALLEEYYLPERTVLAILP 230 (353)
T ss_pred CeEEEeecCCCCchhhHHHHHHHHHHcCCCcEEEEe-----ccCCC-CCCCCCHHHHHHHHHHHHHhCCCCCcEEEEecc
Confidence 3788888999999999999999987643 3 44443 22211 112345555665444331 123 55555444
Q ss_pred -cccccccCCCCHHHHH-HH-HHHhhCccEEEEcCCCCCCCC------CCCCHHHHHHHH-hhcCcEEEEEcceeccCC-
Q 016934 179 -QIQFSSVRHLSPQQFV-EK-LSRELGVRGVVAGENYRFGYK------AAGDASELVRLC-EEYGMDACIINSVMDKHQ- 247 (380)
Q Consensus 179 -~~~Fa~i~~ls~e~Fi-e~-L~~~L~vk~IVVG~DFrFG~~------r~Gd~~~Lk~l~-~~~G~~v~iV~~v~~~~~- 247 (380)
...|+ .|.+=+ +- +-+++|+.+++||.|+. |-+ ...++..+-+-. .+.|+++..++...+-.+
T Consensus 231 ~~mryA-----GPrEallhAiirkN~GcThfIvGrDHA-G~g~~~~yY~~y~aq~i~~~~~~~l~I~~v~~~~~~Yc~~c 304 (353)
T cd00517 231 LPMRYA-----GPREALWHAIIRKNYGATHFIVGRDHA-GVGHPGDYYGPYDAQEIFKKLAPELGIEPVPFREAAYCPKC 304 (353)
T ss_pred chhccc-----CcHHHHHHHHHHHhCCCCeEEECCCCC-CCCCccccCCcchhHHHHHhCcccCCceEEecceeEEecCC
Confidence 33333 455533 44 45689999999999873 222 223444443322 236777766655444322
Q ss_pred -CC--CcccCCCCccCCccchHHHHHHHHcCCc
Q 016934 248 -DS--RDIDCNDSKERGQVSSTRVRQALAMGDM 277 (380)
Q Consensus 248 -~~--~~~~~~~~~~~~~ISST~IR~~L~~GdI 277 (380)
.. ..+-| ...+...+|.|.||++|++|..
T Consensus 305 ~~~~~~~~cp-~~~~~~~iSgt~iR~~L~~G~~ 336 (353)
T cd00517 305 DGMASEDTCP-HGEDFLNISGTKLRKMLREGEK 336 (353)
T ss_pred CeEEecccCC-CCCceeeeCHHHHHHHHHCCCC
Confidence 11 11222 2233568999999999999975
No 75
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function.; PDB: 3GMI_A.
Probab=96.82 E-value=0.0027 Score=65.18 Aligned_cols=104 Identities=22% Similarity=0.298 Sum_probs=33.8
Q ss_pred EEEeecCccCHHHHHHHHHHHHh-CCC-EE-EeecCcccccccCCCCCCCChHHHHHHHHhcCCccCeEEEEeccccccc
Q 016934 108 VALGKFDALHIGHRELAIQASKI-GAP-YL-LSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQIQFSS 184 (380)
Q Consensus 108 vtIG~FDGvHlGHq~LI~~A~~~-g~~-~V-vtF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD~vv~~~F~~~Fa~ 184 (380)
-.|--|..+|-||...|+++++. +.. +| |+--+ +.. ...+.++++..|.++--..| +|.|+-+|+. |+
T Consensus 5 GIIaEYNPFHnGH~y~i~~~k~~~~ad~ii~vMSGn---FvQ-RGEPAi~dKw~RA~~AL~~G--aDLViELP~~--~a- 75 (388)
T PF05636_consen 5 GIIAEYNPFHNGHLYQIEQAKKITGADVIIAVMSGN---FVQ-RGEPAIIDKWTRAEMALKNG--ADLVIELPVV--YA- 75 (388)
T ss_dssp --E---TT--HHHHHHHHHHH---TSSEEEEEE--T---TSB-TSSB-SS-HHHHHHHHHHHT---SEEEE---G-----
T ss_pred CeEEeECCccHHHHHHHHHHhccCCCCEEEEEECCC---ccc-CCCeeeCCHHHHHHHHHHcC--CCEEEECCCc--cc-
Confidence 34567999999999999999976 433 23 22111 111 12245889999998866666 8999999985 44
Q ss_pred cCCCCHHHHHHH---HHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHH
Q 016934 185 VRHLSPQQFVEK---LSRELGVRGVVAGENYRFGYKAAGDASELVRLC 229 (380)
Q Consensus 185 i~~ls~e~Fie~---L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~ 229 (380)
-.+++.|.+- |+..|+++.++-|.. .||.+.|.+++
T Consensus 76 --~qsA~~FA~gaV~lL~~lgvd~l~FGsE-------~~~~~~l~~~a 114 (388)
T PF05636_consen 76 --LQSAEYFARGAVSLLNALGVDYLSFGSE-------SGDIEDLQKIA 114 (388)
T ss_dssp ------------------------------------------------
T ss_pred --cccccccccccccccccccccccccccc-------ccccccccccc
Confidence 3678889874 788999999988766 34666665544
No 76
>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=96.82 E-value=0.041 Score=56.14 Aligned_cols=163 Identities=15% Similarity=0.156 Sum_probs=92.7
Q ss_pred ceEEEEeecCccCHHHHHHHHHHHHhCCCEEEeecCcccccccCCCCCCCChHHHHHHHHhc---CCccCeEEEEecccc
Q 016934 105 GGIVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSW---APYCGNVAPVEFQIQ 181 (380)
Q Consensus 105 ~~vvtIG~FDGvHlGHq~LI~~A~~~g~~~VvtF~~P~~vl~~~~~~~l~s~~~R~~lL~~l---g~~vD~vv~~~F~~~ 181 (380)
.+||++=.++-+|+||..|.+.|.+...-+++.+ +... .+.-=+..+-|.+..+.+ ..-=|.+++-.+-.+
T Consensus 184 k~vvafQTRNp~HraHEyl~K~Al~~vdgllv~p-----lVG~-tk~gD~~~e~rm~~ye~l~~~Yyp~dr~~Ls~~~~a 257 (397)
T COG2046 184 KTVVAFQTRNPPHRAHEYLQKRALEKVDGLLVHP-----LVGA-TKPGDIPDEVRMEYYEALLKHYYPPDRVFLSVLPAA 257 (397)
T ss_pred eEEEEEecCCCchHHHHHHHHHHHHhcCcEEEEe-----eecc-ccCCCchHHHHHHHHHHHHHhCCCCCcEEEEecHHH
Confidence 6899999999999999999999987643233332 1111 111123444555543332 210244444333222
Q ss_pred ccccCCCCHHH-HHHHH-HHhhCccEEEEcCCCCCCCCCC---CCHHHH-HHHHhhcCcEEEEEcceeccCC--CC--Cc
Q 016934 182 FSSVRHLSPQQ-FVEKL-SRELGVRGVVAGENYRFGYKAA---GDASEL-VRLCEEYGMDACIINSVMDKHQ--DS--RD 251 (380)
Q Consensus 182 Fa~i~~ls~e~-Fie~L-~~~L~vk~IVVG~DFrFG~~r~---Gd~~~L-k~l~~~~G~~v~iV~~v~~~~~--~~--~~ 251 (380)
.. ---|++ -++-+ -+++|+.++|||.|+. |-+.= .++.+| .++.+++|+++..++...+=.+ .. +.
T Consensus 258 MR---yagPrEa~~HaIIRkNyGcTHfIVGRDHA-GvG~yYg~Y~aq~if~~f~~eLgI~p~~f~e~~YC~~c~~~~~~~ 333 (397)
T COG2046 258 MR---YAGPREALLHAIIRKNYGCTHFIVGRDHA-GVGDYYGPYDAQEIFDEFSPELGITPVFFEEFFYCPKCGQMVSTK 333 (397)
T ss_pred hh---hcCcHHHHHHHHHHhhcCCeeeeecCCCC-CccccCCcccHHHHHHhcccccCcEEEeccceeecccccCCcccc
Confidence 11 123444 44544 4689999999999985 43322 234443 4444577887766655432111 11 22
Q ss_pred ccCCCCccCCccchHHHHHHHHcCCc
Q 016934 252 IDCNDSKERGQVSSTRVRQALAMGDM 277 (380)
Q Consensus 252 ~~~~~~~~~~~ISST~IR~~L~~GdI 277 (380)
+-|..+.....+|+|.+|+.|.+|..
T Consensus 334 ~cph~~~~~~~~SGt~lR~~Lr~G~~ 359 (397)
T COG2046 334 TCPHGDEHHLHISGTKLREMLRAGVK 359 (397)
T ss_pred cCCCCCcceEEEccHHHHHHHHcCCC
Confidence 22334444568999999999999974
No 77
>COG1323 Predicted nucleotidyltransferase [General function prediction only]
Probab=96.74 E-value=0.0073 Score=61.43 Aligned_cols=106 Identities=15% Similarity=0.197 Sum_probs=68.5
Q ss_pred EEeecCccCHHHHHHHHHHHHh-CCCEEEeecCcccccccCCCCCCCChHHHHHHHHhcCCccCeEEEEeccccccccCC
Q 016934 109 ALGKFDALHIGHRELAIQASKI-GAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQIQFSSVRH 187 (380)
Q Consensus 109 tIG~FDGvHlGHq~LI~~A~~~-g~~~VvtF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD~vv~~~F~~~Fa~i~~ 187 (380)
.|=-||++|.||+.+|++|++. +...++.+- +..+... ..+.+.+..+|.+.--..| +|.|+.+|++. + .
T Consensus 6 ii~eyNPfHnGH~y~i~~Ar~~~~~d~~i~~m-sgdf~qR-gepai~~k~~r~~~aL~~g--~D~VIelP~~~--s---~ 76 (358)
T COG1323 6 IIAEYNPFHNGHQYHINKAREEFKGDEIIAVM-SGDFTQR-GEPAIGHKWERKKMALEGG--ADLVIELPLER--S---G 76 (358)
T ss_pred eeeecCcccccHHHHHHHHHHhccCCceEEee-ecchhhc-CCCccccHHHHHhhhhhcC--ceEEEEcceEE--e---c
Confidence 3457999999999999999984 222221110 0111111 1245788888888766666 89999999864 3 2
Q ss_pred CCHHHHHHH---HHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHh
Q 016934 188 LSPQQFVEK---LSRELGVRGVVAGENYRFGYKAAGDASELVRLCE 230 (380)
Q Consensus 188 ls~e~Fie~---L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~ 230 (380)
.++.-|... ++..|++..|+.|.. .+|+..|+++++
T Consensus 77 q~a~~fa~~av~il~~l~~~~i~fgse-------~~~i~~~~~~a~ 115 (358)
T COG1323 77 QGAPYFATRAVRILNALGGDDIAFGSP-------PMGIMGLGQYAE 115 (358)
T ss_pred CCCchhhHHHHHHHHhcCCCeEEEeCC-------CCchHHHHHHHH
Confidence 445556543 677899999998865 345666655544
No 78
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=95.62 E-value=0.51 Score=50.94 Aligned_cols=161 Identities=17% Similarity=0.199 Sum_probs=91.3
Q ss_pred ceEEEEeecCccCHHHHHHHHHHHHhCCCEEEeecCcccccccCCCCCCCChHHHHHHHHhcC--CccCeEEEEec--cc
Q 016934 105 GGIVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWA--PYCGNVAPVEF--QI 180 (380)
Q Consensus 105 ~~vvtIG~FDGvHlGHq~LI~~A~~~g~~~VvtF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg--~~vD~vv~~~F--~~ 180 (380)
..|+++=.-+.+|++|.+|++.|.+.....| |-+| +.++. ..--++.+-|.+.++.+- .--|.+++..| ..
T Consensus 187 ~~v~afqtrnP~Hr~He~l~~~a~~~~d~~l--ll~p--~~G~~-k~~d~~~~~r~~~~~~~~~~~p~~~~~l~~~p~~m 261 (568)
T PRK05537 187 RRVVAFQTRNPLHRAHEELTKRAAREVGANL--LIHP--VVGMT-KPGDIDHFTRVRCYEALLDKYPPATTLLSLLPLAM 261 (568)
T ss_pred CcEEEEecCCCCcHHHHHHHHHHHHhcCCeE--EEec--CCCCC-CCCCCCHHHHHHHHHHHHHhCCCCcEEEEeccchh
Confidence 5778888999999999999999987644333 2222 12211 112345555554433321 01345444443 44
Q ss_pred cccccCCCCHHH-HHHH-HHHhhCccEEEEcCCCCCCCC------CCCCHHHHHHHH----hhcCcEEEEEcceeccCCC
Q 016934 181 QFSSVRHLSPQQ-FVEK-LSRELGVRGVVAGENYRFGYK------AAGDASELVRLC----EEYGMDACIINSVMDKHQD 248 (380)
Q Consensus 181 ~Fa~i~~ls~e~-Fie~-L~~~L~vk~IVVG~DFrFG~~------r~Gd~~~Lk~l~----~~~G~~v~iV~~v~~~~~~ 248 (380)
.|+ .|.+ -++- +.+++|+.+++||.|+. |-. .-.+....+++. ...|+++..++...+..+-
T Consensus 262 rya-----Gpreai~hAi~r~N~Gcth~ivGrdhA-g~~~~~~~g~~Y~~~~a~~i~~~~~~~l~i~~~~~~~~~Y~~~~ 335 (568)
T PRK05537 262 RMA-----GPREALWHAIIRRNYGCTHFIVGRDHA-GPGKDSRGKPFYGPYDAQELFAKYADEIGITMVPFKEMVYVQDK 335 (568)
T ss_pred ccc-----CcHHHHHHHHHHHhCCCCeEEECCCCC-CCCCCCcCcccCCchHHHHHHHhCccccCceEEecceeEEEcCC
Confidence 444 3554 3344 45689999999998864 431 122333333333 4566776666554443221
Q ss_pred --C--CcccCCCCccCCccchHHHHHHHHcCCc
Q 016934 249 --S--RDIDCNDSKERGQVSSTRVRQALAMGDM 277 (380)
Q Consensus 249 --~--~~~~~~~~~~~~~ISST~IR~~L~~GdI 277 (380)
. ..+-|-. .+...+|.|.||++|.+|..
T Consensus 336 ~~~~~~~~cph~-~~~~~~sgt~ir~~l~~G~~ 367 (568)
T PRK05537 336 AQYVPVDEVPQG-ATVLTISGTELRRRLREGLE 367 (568)
T ss_pred CeEEecCcCCCC-cceeccCHHHHHHHHHCCCC
Confidence 1 1111211 24578999999999999986
No 79
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=95.48 E-value=0.22 Score=46.02 Aligned_cols=131 Identities=18% Similarity=0.173 Sum_probs=72.6
Q ss_pred ceEEEEeecCccCHHHHHHHHHHHHhCCCEEE--eecC-cccccccCCCCCCCChHHHHHHH----HhcCCccC-eEEEE
Q 016934 105 GGIVALGKFDALHIGHRELAIQASKIGAPYLL--SFIG-MAEVFGWEPRAPIVAKCDRKRVL----SSWAPYCG-NVAPV 176 (380)
Q Consensus 105 ~~vvtIG~FDGvHlGHq~LI~~A~~~g~~~Vv--tF~~-P~~vl~~~~~~~l~s~~~R~~lL----~~lg~~vD-~vv~~ 176 (380)
...+.+|-|-.+|.||.++|+.|.+....++| -.+. .... ..-++..+|..++ +..+ +| .+...
T Consensus 4 ~rgv~~GRFqP~H~GHl~vi~~al~~vDeliI~iGSa~~~~t~------~nPfTagER~~mi~~~L~~~~--~~~r~~~~ 75 (172)
T COG1056 4 KRGVYFGRFQPLHTGHLYVIKRALSKVDELIIVIGSAQESHTL------KNPFTAGERIPMIRDRLREAG--LDLRVYLR 75 (172)
T ss_pred eEEEEEeccCCccHhHHHHHHHHHHhCCEEEEEEccCcccccc------cCCCCccchhHHHHHHHHhcC--CCceEEEE
Confidence 35689999999999999999999887555433 2221 1111 1234566675544 3444 44 23333
Q ss_pred e-ccccccccCCCCHHHHHHHHHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcceeccCCCCCcccCC
Q 016934 177 E-FQIQFSSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCN 255 (380)
Q Consensus 177 ~-F~~~Fa~i~~ls~e~Fie~L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~~~~~ 255 (380)
+ |+.+.+ .-++ .+++.+-+.. |--++ || .....+..+.|.++..-+.+-
T Consensus 76 ~v~d~~~n-------~i~v-~~v~~~~p~~-----~~~~~----~n-~~v~~lf~~~~~~~~~p~~f~------------ 125 (172)
T COG1056 76 PVFDIEYN-------DIWV-AYVEDLVPPF-----DVVYT----WN-PWVARLFHEKGEKVYYPPMFP------------ 125 (172)
T ss_pred ecCccccc-------hhhH-HHHhhcCCCc-----cccCC----CC-HHHHHHHhhcCceeecCCccc------------
Confidence 3 333322 1233 2223332222 22222 22 233455667787776543321
Q ss_pred CCccCCccchHHHHHHHHcCCc
Q 016934 256 DSKERGQVSSTRVRQALAMGDM 277 (380)
Q Consensus 256 ~~~~~~~ISST~IR~~L~~GdI 277 (380)
....|.|.||+.+..||.
T Consensus 126 ----~~e~~~t~ir~~~~~~e~ 143 (172)
T COG1056 126 ----RWEYSGTAIRRKMLGGED 143 (172)
T ss_pred ----ccccccchHHHHhhcCcc
Confidence 246899999999999987
No 80
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....
Probab=93.38 E-value=0.17 Score=50.11 Aligned_cols=126 Identities=20% Similarity=0.172 Sum_probs=60.4
Q ss_pred ceEEEEeecCccCHHHHHHHHHHHHhCCCEEE-eecCcccccccCC-CCCCCChHHHHHHHHhcCCccCeEEEEe----c
Q 016934 105 GGIVALGKFDALHIGHRELAIQASKIGAPYLL-SFIGMAEVFGWEP-RAPIVAKCDRKRVLSSWAPYCGNVAPVE----F 178 (380)
Q Consensus 105 ~~vvtIG~FDGvHlGHq~LI~~A~~~g~~~Vv-tF~~P~~vl~~~~-~~~l~s~~~R~~lL~~lg~~vD~vv~~~----F 178 (380)
+-|=|+| .+|-||..|+++|++.+..+|+ .|.+|..+-..+- ....-+.+.=+++|+..| ||.++.-. |
T Consensus 25 gfVPTMG---aLHeGHlsLi~~A~~~~d~vVVSIFVNP~QF~~~eD~~~YPR~~e~D~~ll~~~g--vD~vF~Ps~~emY 99 (280)
T PF02569_consen 25 GFVPTMG---ALHEGHLSLIRRARAENDVVVVSIFVNPTQFGPNEDFDKYPRTLERDLELLEKAG--VDAVFAPSVEEMY 99 (280)
T ss_dssp EEEEE-S---S--HHHHHHHHHHHHHSSEEEEEE---GGGSSTTSHTTTS---HHHHHHHHHHTT---SEEE---HHHHS
T ss_pred EEECCCc---hhhHHHHHHHHHHHhCCCEEEEEECcCcccCCCcchhhhCCCChHHHHHHHhccC--CCEEEcCCCCccC
Confidence 3455666 4699999999999998877665 4666765432111 111123444467888888 88766421 1
Q ss_pred ccc----------ccccCCC----CHHHHH------HHHHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEE
Q 016934 179 QIQ----------FSSVRHL----SPQQFV------EKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACI 238 (380)
Q Consensus 179 ~~~----------Fa~i~~l----s~e~Fi------e~L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~i 238 (380)
-.. ++. .+ .|--|- .+|..-.+++..+.|+ |-.--...++++.+.+++.+.|
T Consensus 100 P~~~~t~v~~~~~l~~--~leG~~RPghF~GV~Tvv~KLf~iv~P~~ayfGe------KD~QQl~iIr~mv~Dl~~~v~I 171 (280)
T PF02569_consen 100 PEGFSTYVSVGPGLSE--ILEGASRPGHFRGVATVVAKLFNIVQPDRAYFGE------KDYQQLAIIRRMVRDLNLPVEI 171 (280)
T ss_dssp TTTSTCEEEEESCHHT--STHHHHSTTHHHHHHHHHHHHHHHH--SEEEEET------TSHHHHHHHHHHHHHTT-SSEE
T ss_pred CCCCceEEEcCccccc--ccCCCCCcchhHHHHHHHHHHHHHhCCCEEEEec------hHHHHHHHHHHHHHHhCCCCEE
Confidence 111 111 12 222232 2344555888888765 2222344558888877755544
Q ss_pred --Eccee
Q 016934 239 --INSVM 243 (380)
Q Consensus 239 --V~~v~ 243 (380)
+|.+.
T Consensus 172 ~~~ptvR 178 (280)
T PF02569_consen 172 VGCPTVR 178 (280)
T ss_dssp EEE---B
T ss_pred EEeCCeE
Confidence 45543
No 81
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=91.23 E-value=0.47 Score=46.86 Aligned_cols=57 Identities=19% Similarity=0.089 Sum_probs=36.5
Q ss_pred ccCHHHHHHHHHHHHhCCCEE-EeecCcccccccCCC--CCCCChHHHHHHHHhcCCccCeEE
Q 016934 115 ALHIGHRELAIQASKIGAPYL-LSFIGMAEVFGWEPR--APIVAKCDRKRVLSSWAPYCGNVA 174 (380)
Q Consensus 115 GvHlGHq~LI~~A~~~g~~~V-vtF~~P~~vl~~~~~--~~l~s~~~R~~lL~~lg~~vD~vv 174 (380)
.+|-||..|+++|++.+..+| ..|.+|..+ ++..+ ..--+.++=.++++..| ||.++
T Consensus 32 ~LH~GHlsLVr~A~~~~d~VVVSIFVNP~QF-g~~EDl~~YPR~l~~D~~~le~~g--vd~vF 91 (285)
T COG0414 32 NLHEGHLSLVRRAKKENDVVVVSIFVNPLQF-GPNEDLDRYPRTLERDLELLEKEG--VDIVF 91 (285)
T ss_pred ccchHHHHHHHHHhhcCCeEEEEEEeChhhc-CCchhhhhCCCCHHHHHHHHHhcC--CcEEe
Confidence 589999999999999887755 457777543 22111 11123344457788887 67554
No 82
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=90.70 E-value=0.51 Score=50.41 Aligned_cols=62 Identities=18% Similarity=0.105 Sum_probs=39.8
Q ss_pred ecCccCHHHHHHHHHHHHhCCCEEE-eecCcccccccCC-CCCCCChHHHHHHHHhcCCccCeEEE
Q 016934 112 KFDALHIGHRELAIQASKIGAPYLL-SFIGMAEVFGWEP-RAPIVAKCDRKRVLSSWAPYCGNVAP 175 (380)
Q Consensus 112 ~FDGvHlGHq~LI~~A~~~g~~~Vv-tF~~P~~vl~~~~-~~~l~s~~~R~~lL~~lg~~vD~vv~ 175 (380)
.-=++|-||..|+++|++.+..+|+ .|.+|..+-..+- ...--+.++=.++|+..| ||.++.
T Consensus 27 TMG~LH~GHlsLi~~A~~~~d~vVvSIFVNP~QF~~~eD~~~YPr~~~~D~~~l~~~g--vd~vf~ 90 (512)
T PRK13477 27 TMGALHQGHLSLIRRARQENDVVLVSIFVNPLQFGPNEDLERYPRTLEADRELCESAG--VDAIFA 90 (512)
T ss_pred CCcchhHHHHHHHHHHHHhCCEEEEEEccCcccCCCchhhhhCCCCHHHHHHHHHhcC--CCEEEC
Confidence 3346999999999999998876655 4666765422111 111224444467888888 786653
No 83
>KOG3351 consensus Predicted nucleotidyltransferase [General function prediction only]
Probab=88.11 E-value=2 Score=42.04 Aligned_cols=130 Identities=24% Similarity=0.286 Sum_probs=70.8
Q ss_pred eEEEEeecCccCHHHHHHHHHHHHhCCC-EE--EeecCc--ccccccCCCCCCCChHHHHHH----HHhcCCccCeEEEE
Q 016934 106 GIVALGKFDALHIGHRELAIQASKIGAP-YL--LSFIGM--AEVFGWEPRAPIVAKCDRKRV----LSSWAPYCGNVAPV 176 (380)
Q Consensus 106 ~vvtIG~FDGvHlGHq~LI~~A~~~g~~-~V--vtF~~P--~~vl~~~~~~~l~s~~~R~~l----L~~lg~~vD~vv~~ 176 (380)
.++.-|.||=+|-||.-|+..|...+.. .| ++=++. .+++ ..-|-+-++|.+- +....+.+ .+-++
T Consensus 144 ~~alGGTFDrLH~gHKvLLs~aa~la~~~lVvGV~d~elL~kK~~----~Eliepie~R~~~V~~Fl~~IKp~l-~~~~v 218 (293)
T KOG3351|consen 144 VVALGGTFDRLHDGHKVLLSVAAELASDRLVVGVTDDELLKKKVL----KELIEPIEERKEHVSNFLKSIKPDL-NVRVV 218 (293)
T ss_pred eEEeccchhhhccchHHHHHHHHHHhhceEEEEecChHHHHHhHH----HHHhhhHHHHHHHHHHHHHhcCCCc-eEEEE
Confidence 4566689999999999999999888654 33 443331 1111 0113345566554 44444321 22334
Q ss_pred eccccccccCCCCHHHHHHHHHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcC---cEEEEEcceeccCCCCCccc
Q 016934 177 EFQIQFSSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYG---MDACIINSVMDKHQDSRDID 253 (380)
Q Consensus 177 ~F~~~Fa~i~~ls~e~Fie~L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G---~~v~iV~~v~~~~~~~~~~~ 253 (380)
|....|-- .-.+ =....+||-+.=.-|.. ...+.--+.| ..+++|+.+..
T Consensus 219 pi~Dp~GP-t~~d-----------~elE~lVVS~ET~~Ga~------aVNr~R~E~glseLai~vVell~~--------- 271 (293)
T KOG3351|consen 219 PIHDPFGP-TITD-----------PELEALVVSEETKTGAT------AVNRKRVERGLSELAIYVVELLYD--------- 271 (293)
T ss_pred ecccCCCC-CccC-----------CcceEEEEeeccccchh------hhhHHHHHcCCchheEEEEeeccC---------
Confidence 54444430 0001 13466778776555532 2222222445 34677776542
Q ss_pred CCCCccCCccchHHHHHHHH
Q 016934 254 CNDSKERGQVSSTRVRQALA 273 (380)
Q Consensus 254 ~~~~~~~~~ISST~IR~~L~ 273 (380)
++++|||.+|+...
T Consensus 272 ------~~kls~t~~~~~kv 285 (293)
T KOG3351|consen 272 ------AQKLSSTENRELKV 285 (293)
T ss_pred ------hhhcchhHHHHhhh
Confidence 36789988888754
No 84
>KOG3042 consensus Panthothenate synthetase [Coenzyme transport and metabolism]
Probab=86.64 E-value=1.9 Score=41.50 Aligned_cols=126 Identities=20% Similarity=0.177 Sum_probs=67.9
Q ss_pred EEEEeecCccCHHHHHHHHHHHHhCCCEE-EeecCcccccccCC-CCCCCChHHHHHHHHhcCCccCeEEE------E--
Q 016934 107 IVALGKFDALHIGHRELAIQASKIGAPYL-LSFIGMAEVFGWEP-RAPIVAKCDRKRVLSSWAPYCGNVAP------V-- 176 (380)
Q Consensus 107 vvtIG~FDGvHlGHq~LI~~A~~~g~~~V-vtF~~P~~vl~~~~-~~~l~s~~~R~~lL~~lg~~vD~vv~------~-- 176 (380)
|=|+|+ +|-||..|++++++.+...| -.|.+|..+-..+. ....-+..+-..+|+++| +|.++. +
T Consensus 29 VPTMG~---LHeGH~SLvrqs~~~~~~tVVSIfVNP~QF~pteDL~~YPrt~~~D~~~L~~Lg--vdvvfaP~v~~~ype 103 (283)
T KOG3042|consen 29 VPTMGC---LHEGHASLVRQSVKENTYTVVSIFVNPSQFAPTEDLDNYPRTLPDDIKLLESLG--VDVVFAPNVHVMYPE 103 (283)
T ss_pred eccccc---ccccHHHHHHHHHhhCceEEEEEEechhhcCChhHhhcCCccCccHHHHHHhcC--ceEEEcCceeEeccC
Confidence 345554 89999999999998877654 45666655432111 001123345567888888 564432 0
Q ss_pred --eccccccccC--------CCCHHHHHH--HHHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEE
Q 016934 177 --EFQIQFSSVR--------HLSPQQFVE--KLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACII 239 (380)
Q Consensus 177 --~F~~~Fa~i~--------~ls~e~Fie--~L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV 239 (380)
+-...|-++- +..|.-|-. -++.+| -.||.-.=..||.+.---+.-++.+.+.++|.++++
T Consensus 104 G~~~~~tfv~V~~Ls~~leGksRP~fFRGVaTvVtKL--FnIV~pDVA~FG~KD~QQ~~iiq~MVrdLnf~iei~ 176 (283)
T KOG3042|consen 104 GIPLKGTFVSVLGLSEKLEGKSRPNFFRGVATVVTKL--FNIVMPDVAYFGQKDIQQFIIIQCMVRDLNFNIEIQ 176 (283)
T ss_pred CCCCCcceEeehhhhhhccCCCCCchhhhHHHHHHHH--HHhcCchhhhhcchhHHHHHHHHHHHHhcccceEEE
Confidence 1111121110 112222211 122222 234444445688876666777889988888776655
No 85
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=75.15 E-value=16 Score=32.32 Aligned_cols=63 Identities=22% Similarity=0.320 Sum_probs=40.8
Q ss_pred HHHHHHHHhhCccEEEEcCCCCCCCCCCCCH------HHHHHHHhhcCcEEEEEcceeccCCCCCcccCCCCccCCccch
Q 016934 192 QFVEKLSRELGVRGVVAGENYRFGYKAAGDA------SELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSS 265 (380)
Q Consensus 192 ~Fie~L~~~L~vk~IVVG~DFrFG~~r~Gd~------~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~~~~~~~~~~~~ISS 265 (380)
+.+..+++..++..||||.-... ++.-+. ...+++.+.++++++.++ ++-||
T Consensus 44 ~~l~~~i~~~~i~~iVvGlP~~~--~G~~~~~~~~v~~f~~~L~~~~~~~v~~~D--------------------Er~TT 101 (138)
T PRK00109 44 DRLEKLIKEWQPDGLVVGLPLNM--DGTEGPRTERARKFANRLEGRFGLPVVLVD--------------------ERLST 101 (138)
T ss_pred HHHHHHHHHhCCCEEEEeccCCC--CCCcCHHHHHHHHHHHHHHHHhCCCEEEEc--------------------CCcCH
Confidence 44556788899999999977653 222222 334455555666665553 67899
Q ss_pred HHHHHHHHcCC
Q 016934 266 TRVRQALAMGD 276 (380)
Q Consensus 266 T~IR~~L~~Gd 276 (380)
..-++.+.+.+
T Consensus 102 ~~A~~~l~~~~ 112 (138)
T PRK00109 102 VEAERALADVG 112 (138)
T ss_pred HHHHHHHHHcC
Confidence 88888885443
No 86
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=71.87 E-value=22 Score=31.12 Aligned_cols=63 Identities=16% Similarity=0.227 Sum_probs=42.0
Q ss_pred HHHHHHHHhhCccEEEEcCCCCCCCCCCCCH------HHHHHHHhhcCcEEEEEcceeccCCCCCcccCCCCccCCccch
Q 016934 192 QFVEKLSRELGVRGVVAGENYRFGYKAAGDA------SELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSS 265 (380)
Q Consensus 192 ~Fie~L~~~L~vk~IVVG~DFrFG~~r~Gd~------~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~~~~~~~~~~~~ISS 265 (380)
+.+..+++..++..||||.-... ++..+. +..+++.+.++++|+.++ ++-||
T Consensus 38 ~~l~~~i~~~~~~~iVvGlP~~~--dG~~~~~a~~v~~f~~~L~~~~~~~v~~~D--------------------Er~TT 95 (130)
T TIGR00250 38 SRIEELLKEWTPDKIVVGLPLNM--DGTEGPLTERAQKFANRLEGRFGVPVVLWD--------------------ERLST 95 (130)
T ss_pred HHHHHHHHHcCCCEEEEeccCCC--CcCcCHHHHHHHHHHHHHHHHhCCCEEEEc--------------------CCcCH
Confidence 44566788899999999977664 223333 333455555677766653 67899
Q ss_pred HHHHHHHHcCC
Q 016934 266 TRVRQALAMGD 276 (380)
Q Consensus 266 T~IR~~L~~Gd 276 (380)
..-++.+.+..
T Consensus 96 ~~A~~~l~~~g 106 (130)
T TIGR00250 96 VEAESGLFARG 106 (130)
T ss_pred HHHHHHHHHcC
Confidence 88888776533
No 87
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=62.76 E-value=64 Score=31.16 Aligned_cols=130 Identities=10% Similarity=0.109 Sum_probs=74.3
Q ss_pred HHHHHHHHHhCCCEEEeecCcccccccCCCCCCCChHHHHHHHHhcCCccC-eEEEEeccccccccCCCCHHHHHHH--H
Q 016934 121 RELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCG-NVAPVEFQIQFSSVRHLSPQQFVEK--L 197 (380)
Q Consensus 121 q~LI~~A~~~g~~~VvtF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD-~vv~~~F~~~Fa~i~~ls~e~Fie~--L 197 (380)
+++++...+.|...++.. ........++.+||.++++.....+. .+.++ ..+...+.++=++. .
T Consensus 24 ~~~i~~l~~~Gv~gl~v~-------GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi------~gv~~~~~~~~~~~a~~ 90 (284)
T cd00950 24 ERLIEFQIENGTDGLVVC-------GTTGESPTLSDEEHEAVIEAVVEAVNGRVPVI------AGTGSNNTAEAIELTKR 90 (284)
T ss_pred HHHHHHHHHcCCCEEEEC-------CCCcchhhCCHHHHHHHHHHHHHHhCCCCcEE------eccCCccHHHHHHHHHH
Confidence 556677777777755422 11122356788889888766532111 11110 11223455665653 4
Q ss_pred HHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcceeccCCCCCcccCCCCccCCccchHHHHHHHHcCCc
Q 016934 198 SRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALAMGDM 277 (380)
Q Consensus 198 ~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~~~~~~~~~~~~ISST~IR~~L~~GdI 277 (380)
.+.++++.+++..-+.|.....+=++..+++++..++.+.+- +.+ . ..+..+|...++++.+..++
T Consensus 91 a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~~pi~lY-----n~P-------~--~~g~~ls~~~~~~L~~~p~v 156 (284)
T cd00950 91 AEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEATDLPVILY-----NVP-------G--RTGVNIEPETVLRLAEHPNI 156 (284)
T ss_pred HHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhcCCCCEEEE-----ECh-------h--HhCCCCCHHHHHHHhcCCCE
Confidence 568899999999887776655555556677777656555433 210 0 01356888888887764433
No 88
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=58.48 E-value=1.1e+02 Score=29.70 Aligned_cols=129 Identities=12% Similarity=0.124 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHhCCCEEEeecCcccccccCCCCCCCChHHHHHHHHhcCCccC-eEEEEeccccccccCCCCHHHHHHH-
Q 016934 119 GHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCG-NVAPVEFQIQFSSVRHLSPQQFVEK- 196 (380)
Q Consensus 119 GHq~LI~~A~~~g~~~VvtF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD-~vv~~~F~~~Fa~i~~ls~e~Fie~- 196 (380)
+-+++++...+.|...++.. ......+.++.+||.++++..-..++ .+-+ +..+...+.++=++.
T Consensus 23 ~l~~~i~~l~~~Gv~gi~~~-------Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~v------i~gv~~~~~~~~i~~a 89 (292)
T PRK03170 23 ALRKLVDYLIANGTDGLVVV-------GTTGESPTLTHEEHEELIRAVVEAVNGRVPV------IAGTGSNSTAEAIELT 89 (292)
T ss_pred HHHHHHHHHHHcCCCEEEEC-------CcCCccccCCHHHHHHHHHHHHHHhCCCCcE------EeecCCchHHHHHHHH
Confidence 45677777777787765422 11223356788999888765431111 1111 011123445555553
Q ss_pred -HHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcceeccCCCCCcccCCCCccCCccchHHHHHHHHc
Q 016934 197 -LSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALAM 274 (380)
Q Consensus 197 -L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~~~~~~~~~~~~ISST~IR~~L~~ 274 (380)
..++++++.+++-.-+-|.....+=++..+++++..+..+.+- +.+ . ..+..+|...++++.+.
T Consensus 90 ~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~~pv~lY-----n~P-------~--~~g~~l~~~~~~~L~~~ 154 (292)
T PRK03170 90 KFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEATDLPIILY-----NVP-------G--RTGVDILPETVARLAEH 154 (292)
T ss_pred HHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEE-----ECc-------c--ccCCCCCHHHHHHHHcC
Confidence 4578899999999888776655555555667777655554432 211 0 01356888888877643
No 89
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=57.21 E-value=54 Score=29.41 Aligned_cols=64 Identities=17% Similarity=0.247 Sum_probs=40.8
Q ss_pred HHHHHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHh----hcCcEEEEEcceeccCCCCCcccCCCCccCCccchHHHH
Q 016934 194 VEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCE----EYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVR 269 (380)
Q Consensus 194 ie~L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~----~~G~~v~iV~~v~~~~~~~~~~~~~~~~~~~~ISST~IR 269 (380)
+..++++.++..||||--+.+-..-.-.....+++++ +++.+++.++ ++.||..-+
T Consensus 45 l~~li~~~~~~~vVVGlP~~m~g~~~~~~~~~~~f~~~L~~r~~lpv~l~D--------------------ERltTv~A~ 104 (141)
T COG0816 45 LLKLVKEYQVDTVVVGLPLNMDGTEGPRAELARKFAERLKKRFNLPVVLWD--------------------ERLSTVEAE 104 (141)
T ss_pred HHHHHHHhCCCEEEEecCcCCCCCcchhHHHHHHHHHHHHHhcCCCEEEEc--------------------CccCHHHHH
Confidence 4457888899999999877553322223333455554 4555544432 678999998
Q ss_pred HHHHcCCc
Q 016934 270 QALAMGDM 277 (380)
Q Consensus 270 ~~L~~GdI 277 (380)
+.|.+-++
T Consensus 105 ~~L~~~~~ 112 (141)
T COG0816 105 RMLIEAGV 112 (141)
T ss_pred HHHHHcCC
Confidence 88887443
No 90
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=53.02 E-value=85 Score=31.80 Aligned_cols=73 Identities=14% Similarity=0.161 Sum_probs=42.9
Q ss_pred HHHHHHHHhcCCccCeEEEEeccccccccCCCCHHHHHHH---HHHhhCccEEEEcCCCCCCCC---CCCCHHHHHHHHh
Q 016934 157 CDRKRVLSSWAPYCGNVAPVEFQIQFSSVRHLSPQQFVEK---LSRELGVRGVVAGENYRFGYK---AAGDASELVRLCE 230 (380)
Q Consensus 157 ~~R~~lL~~lg~~vD~vv~~~F~~~Fa~i~~ls~e~Fie~---L~~~L~vk~IVVG~DFrFG~~---r~Gd~~~Lk~l~~ 230 (380)
.+.++.+...|--|....+..|... ..-.+-|-++.++. +++..+.++|.+|.||.-+-. ...|+..|+.+-+
T Consensus 205 D~qlkaI~~~gGvIgv~~~~~fl~~-~~~~~atldd~v~hI~h~v~~~G~dhVglGsDf~g~~~~p~gled~~~l~~l~~ 283 (313)
T COG2355 205 DEQLKAIAETGGVIGVNFIPAFLRP-GGAARATLDDLVRHIDHFVELVGIDHVGLGSDFDGGTGPPDGLEDVGKLPNLTA 283 (313)
T ss_pred HHHHHHHHhcCCEEEEEeehhhccC-CCCCCCCHHHHHHHHHHHHHhcCcceeEecccccCCCCCchhhcChhHHHHHHH
Confidence 3455555555421333333344332 11124577888875 567789999999999976654 3446666665543
No 91
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=52.85 E-value=1.9e+02 Score=28.32 Aligned_cols=72 Identities=13% Similarity=0.052 Sum_probs=40.4
Q ss_pred CCHHHHHHH--HHHhhCccEEEEcCCCCCCCC---------CCCCHHHHHHHHhhcCcEEEEEcceeccCCCCCcccCCC
Q 016934 188 LSPQQFVEK--LSRELGVRGVVAGENYRFGYK---------AAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCND 256 (380)
Q Consensus 188 ls~e~Fie~--L~~~L~vk~IVVG~DFrFG~~---------r~Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~~~~~~ 256 (380)
++.++.++. .+.+++++.|.+..-+..... ...+...++.+.+..++.+...
T Consensus 225 ~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~----------------- 287 (327)
T cd02803 225 LTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAV----------------- 287 (327)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEe-----------------
Confidence 455655442 346678999988654322111 1234566666666555443222
Q ss_pred CccCCccchHHHHHHHHcCCchh
Q 016934 257 SKERGQVSSTRVRQALAMGDMKY 279 (380)
Q Consensus 257 ~~~~~~ISST~IR~~L~~GdI~~ 279 (380)
+..-|-..++++|++|..+.
T Consensus 288 ---Ggi~t~~~a~~~l~~g~aD~ 307 (327)
T cd02803 288 ---GGIRDPEVAEEILAEGKADL 307 (327)
T ss_pred ---CCCCCHHHHHHHHHCCCCCe
Confidence 12335678999999876443
No 92
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=52.05 E-value=2.1e+02 Score=28.05 Aligned_cols=140 Identities=11% Similarity=0.083 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHhCCCEEEeecCcccccccCCCCCCCChHHHHHHHHhcCCccC-eEEEEeccccccccCCCCHHHHHHH
Q 016934 118 IGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCG-NVAPVEFQIQFSSVRHLSPQQFVEK 196 (380)
Q Consensus 118 lGHq~LI~~A~~~g~~~VvtF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD-~vv~~~F~~~Fa~i~~ls~e~Fie~ 196 (380)
-+-+++++...+.|...++. .+.....+.++.+||.++++..-..++ .+-++ ..+...+.++=++.
T Consensus 21 ~~l~~lv~~~~~~Gv~gi~v-------~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi------~gv~~~~t~~ai~~ 87 (294)
T TIGR02313 21 EALRELIEFQIEGGSHAISV-------GGTSGEPGSLTLEERKQAIENAIDQIAGRIPFA------PGTGALNHDETLEL 87 (294)
T ss_pred HHHHHHHHHHHHcCCCEEEE-------CccCcccccCCHHHHHHHHHHHHHHhCCCCcEE------EECCcchHHHHHHH
Confidence 34567788777778775542 222223457889999988765421111 11111 11112444554553
Q ss_pred --HHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhc-CcEEEEEcceeccCCCCCcccCCCCccCCccchHHHHHHHH
Q 016934 197 --LSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEY-GMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALA 273 (380)
Q Consensus 197 --L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~-G~~v~iV~~v~~~~~~~~~~~~~~~~~~~~ISST~IR~~L~ 273 (380)
..+.++++.+++..-|.|.....+=++..+++++.. +..+.+- +.+ . ..+..+|...|+++.+
T Consensus 88 a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iY-----n~P-------~--~tg~~l~~~~l~~L~~ 153 (294)
T TIGR02313 88 TKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADAVPDFPIIIY-----NIP-------G--RAAQEIAPKTMARLRK 153 (294)
T ss_pred HHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhccCCCEEEE-----eCc-------h--hcCcCCCHHHHHHHHh
Confidence 356789999999999988876656666667777765 5554433 211 0 0135688888888874
Q ss_pred -----------cCCchhhhhhc
Q 016934 274 -----------MGDMKYVSELL 284 (380)
Q Consensus 274 -----------~GdI~~An~LL 284 (380)
.||+....+++
T Consensus 154 ~~pnv~giK~ss~d~~~~~~~~ 175 (294)
T TIGR02313 154 DCPNIVGAKESNKDFEHLNHLF 175 (294)
T ss_pred hCCCEEEEEeCCCCHHHHHHHH
Confidence 46666655543
No 93
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=50.63 E-value=2.3e+02 Score=27.65 Aligned_cols=129 Identities=12% Similarity=0.053 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHh-CCCEEEeecCcccccccCCCCCCCChHHHHHHHHhcCCccCeEEEEeccccccccCCCCHHHHHHH-
Q 016934 119 GHRELAIQASKI-GAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQIQFSSVRHLSPQQFVEK- 196 (380)
Q Consensus 119 GHq~LI~~A~~~-g~~~VvtF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD~vv~~~F~~~Fa~i~~ls~e~Fie~- 196 (380)
+-+++++.+.+. |...++.. ......+.++.+||.++++..-..++.-+.+- +.+...+.++=++.
T Consensus 22 ~~~~~i~~l~~~~Gv~gi~~~-------GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~vi-----agv~~~~~~~ai~~a 89 (288)
T cd00954 22 VLRAIVDYLIEKQGVDGLYVN-------GSTGEGFLLSVEERKQIAEIVAEAAKGKVTLI-----AHVGSLNLKESQELA 89 (288)
T ss_pred HHHHHHHHHHhcCCCCEEEEC-------cCCcCcccCCHHHHHHHHHHHHHHhCCCCeEE-----eccCCCCHHHHHHHH
Confidence 456788888777 87765432 11222356788888888765421111101111 11112444554543
Q ss_pred -HHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhc-CcEEEEEcceeccCCCCCcccCCCCccCCccchHHHHHHHH
Q 016934 197 -LSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEY-GMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALA 273 (380)
Q Consensus 197 -L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~-G~~v~iV~~v~~~~~~~~~~~~~~~~~~~~ISST~IR~~L~ 273 (380)
..++++++.+++-.-|.|.....+=++..+++++.. +..+.+- +.+. .-+..+|...++++.+
T Consensus 90 ~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~iY-----n~P~---------~tg~~l~~~~~~~L~~ 154 (288)
T cd00954 90 KHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMIIY-----HIPA---------LTGVNLTLEQFLELFE 154 (288)
T ss_pred HHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEEEE-----eCcc---------ccCCCCCHHHHHHHhc
Confidence 456889999999888877654444445556666655 5554332 2110 1135677777777765
No 94
>KOG3199 consensus Nicotinamide mononucleotide adenylyl transferase [Coenzyme transport and metabolism]
Probab=50.14 E-value=46 Score=32.07 Aligned_cols=25 Identities=20% Similarity=0.220 Sum_probs=22.2
Q ss_pred eEEEEeecCccCHHHHHHHHHHHHh
Q 016934 106 GIVALGKFDALHIGHRELAIQASKI 130 (380)
Q Consensus 106 ~vvtIG~FDGvHlGHq~LI~~A~~~ 130 (380)
..++.|.|.+.-.+|..+++-|+..
T Consensus 10 ~l~A~gSFNpiT~~HLrmfElAkd~ 34 (234)
T KOG3199|consen 10 VLLACGSFNPITNLHLRMFELAKDY 34 (234)
T ss_pred EEEEecccCchhHHHHHHHHHHHHH
Confidence 5588899999999999999999854
No 95
>PRK08185 hypothetical protein; Provisional
Probab=49.60 E-value=70 Score=31.81 Aligned_cols=68 Identities=16% Similarity=0.227 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHHhhCccEEEE-----cCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcceeccCCCCCcccCCCCccCCc
Q 016934 188 LSPQQFVEKLSRELGVRGVVA-----GENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQ 262 (380)
Q Consensus 188 ls~e~Fie~L~~~L~vk~IVV-----G~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~~~~~~~~~~~~ 262 (380)
.+|++ .+..++..+++.+.+ +--|..+.+..-+++.|+++.+..++ |.+..++ .-
T Consensus 149 t~pee-a~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~~i-----PLVlHGg--------------sg 208 (283)
T PRK08185 149 TDPEQ-AEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERVDI-----PLVLHGG--------------SA 208 (283)
T ss_pred CCHHH-HHHHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhhCC-----CEEEECC--------------CC
Confidence 46755 233455679999999 77887765566689999999886553 4444443 45
Q ss_pred cchHHHHHHHHcC
Q 016934 263 VSSTRVRQALAMG 275 (380)
Q Consensus 263 ISST~IR~~L~~G 275 (380)
++--.+|++++.|
T Consensus 209 ~~~e~~~~ai~~G 221 (283)
T PRK08185 209 NPDAEIAESVQLG 221 (283)
T ss_pred CCHHHHHHHHHCC
Confidence 7888899999887
No 96
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=47.16 E-value=2.1e+02 Score=27.43 Aligned_cols=126 Identities=17% Similarity=0.198 Sum_probs=70.8
Q ss_pred HHHHHHHHHhCCCEEEeecCcccccccCCCCCCCChHHHHHHHHhcCCccC-eEEEEeccccccccCCCCHHHHHHH--H
Q 016934 121 RELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCG-NVAPVEFQIQFSSVRHLSPQQFVEK--L 197 (380)
Q Consensus 121 q~LI~~A~~~g~~~VvtF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD-~vv~~~F~~~Fa~i~~ls~e~Fie~--L 197 (380)
.++++.+.+.|...++.. ........++.+||.++++.....++ .+-+ +..+...+.++-++. .
T Consensus 21 ~~~i~~l~~~Gv~gi~~~-------GstGE~~~ls~~Er~~l~~~~~~~~~~~~~v------i~gv~~~~~~~~i~~a~~ 87 (281)
T cd00408 21 RRLVEFLIEAGVDGLVVL-------GTTGEAPTLTDEERKEVIEAVVEAVAGRVPV------IAGVGANSTREAIELARH 87 (281)
T ss_pred HHHHHHHHHcCCCEEEEC-------CCCcccccCCHHHHHHHHHHHHHHhCCCCeE------EEecCCccHHHHHHHHHH
Confidence 566677777777765432 21223456788899888766531111 1111 011113444554543 4
Q ss_pred HHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcceeccCCCCCcccCCCCccCCccchHHHHHHHH
Q 016934 198 SRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALA 273 (380)
Q Consensus 198 ~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~~~~~~~~~~~~ISST~IR~~L~ 273 (380)
.++++++.+++-.-+.+-....+=++.++++++..+..+.+- +.+. ..+..+|...++++.+
T Consensus 88 a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~iY-----n~P~---------~tg~~l~~~~~~~L~~ 149 (281)
T cd00408 88 AEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASDLPVILY-----NIPG---------RTGVDLSPETIARLAE 149 (281)
T ss_pred HHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEE-----ECcc---------ccCCCCCHHHHHHHhc
Confidence 568899999999988776544444555566666555544332 2110 1135788888888875
No 97
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=45.64 E-value=31 Score=31.37 Aligned_cols=36 Identities=28% Similarity=0.379 Sum_probs=30.1
Q ss_pred CCHHHHHHHHhhcCcEEEEEcceeccCCCCCcccCCCCccCCccchHHHHHHHHcCCch
Q 016934 220 GDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALAMGDMK 278 (380)
Q Consensus 220 Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~~~~~~~~~~~~ISST~IR~~L~~GdI~ 278 (380)
=++.+|.++++++|++|.+++ .+|.+|+.+++.+.+
T Consensus 73 C~Ig~l~~lae~~g~~v~i~~-----------------------Ggt~ar~~ik~~~p~ 108 (158)
T PF01976_consen 73 CDIGDLKKLAEKYGYKVYIAT-----------------------GGTLARKIIKEYRPK 108 (158)
T ss_pred CchhHHHHHHHHcCCEEEEEc-----------------------ChHHHHHHHHHhCCC
Confidence 367888999999999998874 578999999987765
No 98
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=44.93 E-value=2e+02 Score=27.96 Aligned_cols=129 Identities=11% Similarity=0.158 Sum_probs=68.9
Q ss_pred HHHHHHHHHhCCCEEEeecCcccccccCCCCCCCChHHHHHHHHhcCCccC-eEEEEeccccccccCCCCHHHHHHH--H
Q 016934 121 RELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCG-NVAPVEFQIQFSSVRHLSPQQFVEK--L 197 (380)
Q Consensus 121 q~LI~~A~~~g~~~VvtF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD-~vv~~~F~~~Fa~i~~ls~e~Fie~--L 197 (380)
+++++...+.|...++.. ......+.++.+||.++++..-..++ .+-++ ..+...+.++=++. .
T Consensus 22 ~~~i~~l~~~Gv~Gi~~~-------GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi------~gv~~~s~~~~i~~a~~ 88 (285)
T TIGR00674 22 EKLIDFQIENGTDAIVVV-------GTTGESPTLSHEEHKKVIEFVVDLVNGRVPVI------AGTGSNATEEAISLTKF 88 (285)
T ss_pred HHHHHHHHHcCCCEEEEC-------ccCcccccCCHHHHHHHHHHHHHHhCCCCeEE------EeCCCccHHHHHHHHHH
Confidence 556666666676655421 11122356788888888765421111 11111 11123455665553 4
Q ss_pred HHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcceeccCCCCCcccCCCCccCCccchHHHHHHHHcCC
Q 016934 198 SRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALAMGD 276 (380)
Q Consensus 198 ~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~~~~~~~~~~~~ISST~IR~~L~~Gd 276 (380)
.+.++++.+++-.-+-|.....+=++..+++++..+..+.+- +.+. .-+..+|...++++.+..+
T Consensus 89 a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~~~pi~lY-----n~P~---------~tg~~l~~~~l~~L~~~~~ 153 (285)
T TIGR00674 89 AEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEVDLPIILY-----NVPS---------RTGVSLYPETVKRLAEEPN 153 (285)
T ss_pred HHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcCCCCEEEE-----ECcH---------HhcCCCCHHHHHHHHcCCC
Confidence 567899999999888775543333444566666655554332 2110 0134677777777765444
No 99
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=44.14 E-value=2.7e+02 Score=28.14 Aligned_cols=72 Identities=14% Similarity=0.099 Sum_probs=37.0
Q ss_pred CCHHHHHHH--HHHhhCccEEEEcCCC-CC----CCCCCCCHHHHHHHHhhcCcEEEEEcceeccCCCCCcccCCCCccC
Q 016934 188 LSPQQFVEK--LSRELGVRGVVAGENY-RF----GYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKER 260 (380)
Q Consensus 188 ls~e~Fie~--L~~~L~vk~IVVG~DF-rF----G~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~~~~~~~~~~ 260 (380)
++.++.++. .+++.+++.|.|-.-- .. .+. ..+....+++-+..++.|..+ +
T Consensus 224 ~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~-~~~~~~~~~ik~~~~ipVi~~------G-------------- 282 (337)
T PRK13523 224 LTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYP-GYQVPFAEHIREHANIATGAV------G-------------- 282 (337)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCc-cccHHHHHHHHhhcCCcEEEe------C--------------
Confidence 567776653 2345578887764321 10 011 114455555544444433222 1
Q ss_pred CccchHHHHHHHHcCCchhh
Q 016934 261 GQVSSTRVRQALAMGDMKYV 280 (380)
Q Consensus 261 ~~ISST~IR~~L~~GdI~~A 280 (380)
...+-..+.++|++|..+.+
T Consensus 283 ~i~~~~~a~~~l~~g~~D~V 302 (337)
T PRK13523 283 LITSGAQAEEILQNNRADLI 302 (337)
T ss_pred CCCCHHHHHHHHHcCCCChH
Confidence 22344669999999976554
No 100
>COG0066 LeuD 3-isopropylmalate dehydratase small subunit [Amino acid transport and metabolism]
Probab=44.08 E-value=14 Score=34.75 Aligned_cols=48 Identities=31% Similarity=0.401 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcce
Q 016934 191 QQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSV 242 (380)
Q Consensus 191 e~Fie~L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v 242 (380)
-+|+.+.-.--+.+.+|+|+||-+|.-|.--+-.|+ .+|+.+.|-++.
T Consensus 51 PdF~~n~~~yq~g~IlVag~NFGcGSSREHApwALk----~~Gi~~VIA~SF 98 (191)
T COG0066 51 PDFVLNVPPYQGGDILVAGENFGCGSSREHAPWALK----DYGIRAVIAPSF 98 (191)
T ss_pred cchhhcCCccCCccEEEecCCCCCCccHHHHHHHHH----HcCeeEEEeccH
Confidence 356654322226789999999999988875555554 679998877664
No 101
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=40.16 E-value=4e+02 Score=26.81 Aligned_cols=18 Identities=33% Similarity=0.394 Sum_probs=13.3
Q ss_pred cchHHHHHHHHcCCchhh
Q 016934 263 VSSTRVRQALAMGDMKYV 280 (380)
Q Consensus 263 ISST~IR~~L~~GdI~~A 280 (380)
.+-..+.++|++|..+.+
T Consensus 295 ~~~~~~~~~l~~~~~D~V 312 (343)
T cd04734 295 RDPAEAEQALAAGHADMV 312 (343)
T ss_pred CCHHHHHHHHHcCCCCee
Confidence 355789999998876544
No 102
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=39.28 E-value=3.6e+02 Score=25.96 Aligned_cols=53 Identities=13% Similarity=0.117 Sum_probs=32.4
Q ss_pred HHHHHHHHhCCCEEEeecCcccccccCCCCCCCChHHHHHHHHhcCCccCeEEEEeccccccccCCCCHHHHHHH
Q 016934 122 ELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQIQFSSVRHLSPQQFVEK 196 (380)
Q Consensus 122 ~LI~~A~~~g~~~VvtF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD~vv~~~F~~~Fa~i~~ls~e~Fie~ 196 (380)
++|++.++.|.+.-+++.| .+ +.+.=..+|.. +|.|.+..-+..|. .+.|++.
T Consensus 99 ~~i~~Ik~~G~kaGlalnP---------~T---~~~~l~~~l~~----vD~VLvMsV~PGf~------GQ~fi~~ 151 (229)
T PRK09722 99 RLIDEIRRAGMKVGLVLNP---------ET---PVESIKYYIHL----LDKITVMTVDPGFA------GQPFIPE 151 (229)
T ss_pred HHHHHHHHcCCCEEEEeCC---------CC---CHHHHHHHHHh----cCEEEEEEEcCCCc------chhccHH
Confidence 5778888888886666543 11 22221234433 78888888888776 3456654
No 103
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=38.64 E-value=3.2e+02 Score=26.73 Aligned_cols=127 Identities=10% Similarity=0.042 Sum_probs=68.0
Q ss_pred HHHHHHHHHhC-CCEEEeecCcccccccCCCCCCCChHHHHHHHHhcCCccCeEEEEeccccccccCCCCHHHHHHH--H
Q 016934 121 RELAIQASKIG-APYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQIQFSSVRHLSPQQFVEK--L 197 (380)
Q Consensus 121 q~LI~~A~~~g-~~~VvtF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD~vv~~~F~~~Fa~i~~ls~e~Fie~--L 197 (380)
+++++...+.| ...++.. ........++.+||.++++..-..++.=+.+-. .+...+.++=++. .
T Consensus 24 ~~~i~~~i~~G~v~gi~~~-------GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~-----gv~~~~t~~~i~la~~ 91 (290)
T TIGR00683 24 RQIIRHNIDKMKVDGLYVG-------GSTGENFMLSTEEKKEIFRIAKDEAKDQIALIA-----QVGSVNLKEAVELGKY 91 (290)
T ss_pred HHHHHHHHhCCCcCEEEEC-------CcccccccCCHHHHHHHHHHHHHHhCCCCcEEE-----ecCCCCHHHHHHHHHH
Confidence 45666666667 6655422 112223467888888887654211111011111 1113455555553 4
Q ss_pred HHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhc-CcEEEEEcceeccCCCCCcccCCCCccCCccchHHHHHHHH
Q 016934 198 SRELGVRGVVAGENYRFGYKAAGDASELVRLCEEY-GMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALA 273 (380)
Q Consensus 198 ~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~-G~~v~iV~~v~~~~~~~~~~~~~~~~~~~~ISST~IR~~L~ 273 (380)
.+.++++.+++-.-|.|.....+=++..+++++.. +..+.+ ++.+. .-+..+|.-.|+++.+
T Consensus 92 a~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~~~~lpv~l-----Yn~P~---------~tg~~l~~~~i~~L~~ 154 (290)
T TIGR00683 92 ATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGGLNMIV-----YSIPF---------LTGVNMGIEQFGELYK 154 (290)
T ss_pred HHHhCCCEEEEeCCcCCCCCHHHHHHHHHHHHhhCCCCCEEE-----EeCcc---------ccccCcCHHHHHHHhc
Confidence 56889999999998877765544445556665543 344332 22210 0135677777777764
No 104
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=37.03 E-value=1.1e+02 Score=25.75 Aligned_cols=49 Identities=14% Similarity=0.190 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEc
Q 016934 187 HLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIIN 240 (380)
Q Consensus 187 ~ls~e~Fie~L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~ 240 (380)
.+++++|-..+... .+..|++|-.-+- .-=...+.+..+++|+.+++++
T Consensus 38 ~l~~~~l~~~~~~~-~peiliiGTG~~~----~~~~~~~~~~l~~~gI~vE~m~ 86 (109)
T cd00248 38 DLDPEALLPLLAED-RPDILLIGTGAEI----AFLPRALRAALRAAGIGVEVMS 86 (109)
T ss_pred cCCHHHHHHHHhhC-CCCEEEEcCCCCC----CcCCHHHHHHHHHcCCeEEEeC
Confidence 58899977644333 4999999975542 1223556777789999998875
No 105
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=37.01 E-value=1.5e+02 Score=29.28 Aligned_cols=68 Identities=18% Similarity=0.314 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHHhhCccEEEE--cCCC-CCCCCCCCCHHHHHHHHhhcCcEEEEEcceeccCCCCCcccCCCCccCCccc
Q 016934 188 LSPQQFVEKLSRELGVRGVVA--GENY-RFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVS 264 (380)
Q Consensus 188 ls~e~Fie~L~~~L~vk~IVV--G~DF-rFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~~~~~~~~~~~~IS 264 (380)
.++++..+ ..++.+++++.+ |.=| .|-....-+.+.|+++++..++ |.+..++ .-|+
T Consensus 153 t~~eea~~-f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~i-----Plv~hGg--------------SGi~ 212 (282)
T TIGR01859 153 ADPDEAEQ-FVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNI-----PLVLHGA--------------SGIP 212 (282)
T ss_pred CCHHHHHH-HHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhCC-----CEEEECC--------------CCCC
Confidence 57777544 456679999994 5533 3323355689999999987654 4444442 3578
Q ss_pred hHHHHHHHHcC
Q 016934 265 STRVRQALAMG 275 (380)
Q Consensus 265 ST~IR~~L~~G 275 (380)
-..+|++++.|
T Consensus 213 ~e~i~~~i~~G 223 (282)
T TIGR01859 213 EEQIKKAIKLG 223 (282)
T ss_pred HHHHHHHHHcC
Confidence 88888888876
No 106
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=35.96 E-value=3.8e+02 Score=26.73 Aligned_cols=88 Identities=14% Similarity=0.065 Sum_probs=46.2
Q ss_pred CeEEEEeccc-cccccCCCCHHHHHHH--HHHhhCccEEEEcCCCCCCC-----CCCCCHHHHHHHHhhcCcEEEEEcce
Q 016934 171 GNVAPVEFQI-QFSSVRHLSPQQFVEK--LSRELGVRGVVAGENYRFGY-----KAAGDASELVRLCEEYGMDACIINSV 242 (380)
Q Consensus 171 D~vv~~~F~~-~Fa~i~~ls~e~Fie~--L~~~L~vk~IVVG~DFrFG~-----~r~Gd~~~Lk~l~~~~G~~v~iV~~v 242 (380)
|..+.+.++. ++.. ..++.++.++. .+++.+++.|-|..--+... ....+...++++.+..++.|...
T Consensus 221 d~~v~vri~~~~~~~-~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~--- 296 (336)
T cd02932 221 DKPLFVRISATDWVE-GGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPVIAV--- 296 (336)
T ss_pred CceEEEEEcccccCC-CCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCCCCEEEe---
Confidence 5555555542 1110 12456666553 34567888887743211111 12234566667766555443222
Q ss_pred eccCCCCCcccCCCCccCCccchHHHHHHHHcCCchh
Q 016934 243 MDKHQDSRDIDCNDSKERGQVSSTRVRQALAMGDMKY 279 (380)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~ISST~IR~~L~~GdI~~ 279 (380)
+...+-...+++|++|..+.
T Consensus 297 -----------------G~i~t~~~a~~~l~~g~aD~ 316 (336)
T cd02932 297 -----------------GLITDPEQAEAILESGRADL 316 (336)
T ss_pred -----------------CCCCCHHHHHHHHHcCCCCe
Confidence 13346678999999986544
No 107
>PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to the MEROPS peptidase family M19 (membrane dipeptidase family, clan MJ). The protein fold of the peptidase domain for members of this family resembles that of Klebsiella urease, the type example for clan MJ. Renal dipeptidase (rDP) (3.4.13.19 from EC), also known as microsomal dipeptidase, is a zinc-dependent metalloenzyme that hydrolyzes a wide range of dipeptides. It is involved in renal metabolism of glutathione and its conjugates. It is a homodimeric disulphide-linked glycoprotein attached to the renal brush border microvilli membrane by a GPI-anchor. A glutamate residue has recently been shown [,] to be important for the catalytic activity of rDP. rDP seems to be evolutionary related to hypothetical proteins in the PQQ biosynthesis operons of Acinetobacter calcoaceticus and Klebsiella pneumoniae.; GO: 0008235 metalloexopeptidase activity, 0008239 dipeptidyl-peptidase activity, 0016805 dipeptidase activity, 0006508 proteolysis; PDB: 3NEH_B 2RAG_D 3LU2_A 3B40_A 3LY0_A 3FDG_B 2I5G_B 3S2J_A 3S2N_A 3S2L_A ....
Probab=35.23 E-value=1.7e+02 Score=29.43 Aligned_cols=93 Identities=16% Similarity=0.224 Sum_probs=48.6
Q ss_pred cCccCHHHHHHHHHHHHhCCCEEEeecCcccccccCCCCCCCChHHHHHHHHhcCCccCeEEEEeccccccc-c--CCCC
Q 016934 113 FDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQIQFSS-V--RHLS 189 (380)
Q Consensus 113 FDGvHlGHq~LI~~A~~~g~~~VvtF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD~vv~~~F~~~Fa~-i--~~ls 189 (380)
.|--|.+.+...+-+.-...|++.|=.+.+.+. .+|+ ..+.+.++.+...| -||-+.|...|-. - ..-+
T Consensus 176 vDvSH~s~~t~~Dv~~~s~~PviaSHSn~ral~-~h~R---NltDe~iraia~~G----GviGi~~~~~fl~~~~~~~~~ 247 (320)
T PF01244_consen 176 VDVSHLSEKTFWDVLEISKKPVIASHSNARALC-PHPR---NLTDEQIRAIAERG----GVIGINFYPAFLGDDWDPRAS 247 (320)
T ss_dssp EE-TTB-HHHHHHHHHH-SSEEEECCEEBTTTS---TT---SB-HHHHHHHHHTT-----EEEEESSHHHHSTTHSSG-B
T ss_pred eeeccCCHHHHHHHHhhcCCCEEEeccChHhhC-CCCC---CCCHHHHHHHHHCC----cEEEEEcchhhhccccccccc
Confidence 366777777666554333345555422233322 2332 23445677777766 2455666655532 0 2357
Q ss_pred HHHHHHH---HHHhhCccEEEEcCCCC
Q 016934 190 PQQFVEK---LSRELGVRGVVAGENYR 213 (380)
Q Consensus 190 ~e~Fie~---L~~~L~vk~IVVG~DFr 213 (380)
.+++++. +++..++++|-+|.||-
T Consensus 248 ~~~~~~Hi~y~~~l~G~dhVgiGsDfd 274 (320)
T PF01244_consen 248 LDDLVDHIDYIVDLVGIDHVGIGSDFD 274 (320)
T ss_dssp HHHHHHHHHHHHHHH-GGGEEEE--BT
T ss_pred HHHHHHHHHHHHHhcCCCeEEECcccC
Confidence 8999975 46677999999999994
No 108
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=35.05 E-value=4e+02 Score=25.98 Aligned_cols=109 Identities=16% Similarity=0.109 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHH-hCCCEEEeecCcccccccCCCCCCCChHHHHHHHHhcCCccCeEEEEeccccccccCCCCHHHHHHH
Q 016934 118 IGHRELAIQASK-IGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQIQFSSVRHLSPQQFVEK 196 (380)
Q Consensus 118 lGHq~LI~~A~~-~g~~~VvtF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD~vv~~~F~~~Fa~i~~ls~e~Fie~ 196 (380)
-|-+++++...+ .|...++.. ........++.+||.++++..-..++.=+.+-. .+...+.++=++.
T Consensus 24 ~~~~~li~~l~~~~Gv~gi~v~-------GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~via-----gvg~~~t~~ai~~ 91 (293)
T PRK04147 24 QGLRRLVRFNIEKQGIDGLYVG-------GSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIA-----QVGSVNTAEAQEL 91 (293)
T ss_pred HHHHHHHHHHHhcCCCCEEEEC-------CCccccccCCHHHHHHHHHHHHHHhCCCCCEEe-----cCCCCCHHHHHHH
Confidence 355677888777 777655422 111223457788888776654211111011111 1112344554543
Q ss_pred --HHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEE
Q 016934 197 --LSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACI 238 (380)
Q Consensus 197 --L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~i 238 (380)
..++++++.+++-.-|-|.....+=.+.++++++..+..+.+
T Consensus 92 a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~lPv~i 135 (293)
T PRK04147 92 AKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSADNPMIV 135 (293)
T ss_pred HHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCCCCEEE
Confidence 456788888888887776655444444556666654444433
No 109
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=34.53 E-value=80 Score=27.89 Aligned_cols=42 Identities=19% Similarity=0.177 Sum_probs=34.4
Q ss_pred CccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEccee
Q 016934 202 GVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVM 243 (380)
Q Consensus 202 ~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~ 243 (380)
++.-|++|..=..|.-+..|...|+++.+++|+++.....+.
T Consensus 2 ~~~ii~~~~e~~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~ 43 (152)
T cd00886 2 RAAVLTVSDTRSAGEAEDRSGPALVELLEEAGHEVVAYEIVP 43 (152)
T ss_pred EEEEEEEcCcccCCCCccchHHHHHHHHHHcCCeeeeEEEcC
Confidence 456678999888899888899999999999999877665544
No 110
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=34.15 E-value=4.9e+02 Score=25.98 Aligned_cols=15 Identities=40% Similarity=0.547 Sum_probs=12.8
Q ss_pred ecCcc--CHHHHHHHHH
Q 016934 112 KFDAL--HIGHRELAIQ 126 (380)
Q Consensus 112 ~FDGv--HlGHq~LI~~ 126 (380)
-|||| |-||-.||.+
T Consensus 162 GfDgVeih~a~gyLl~q 178 (338)
T cd04733 162 GFDGVQIHAAHGYLLSQ 178 (338)
T ss_pred CCCEEEEchhhhhHHHH
Confidence 39998 8899999987
No 111
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=33.90 E-value=4.1e+02 Score=26.31 Aligned_cols=105 Identities=12% Similarity=0.152 Sum_probs=58.5
Q ss_pred HHHHHHHHHhCCCEEEeecCcccccccCCCCCCCChHHHHHHHHhcCCccC-eEEEEeccccccccCCCCHHHHHHH--H
Q 016934 121 RELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCG-NVAPVEFQIQFSSVRHLSPQQFVEK--L 197 (380)
Q Consensus 121 q~LI~~A~~~g~~~VvtF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD-~vv~~~F~~~Fa~i~~ls~e~Fie~--L 197 (380)
.++++...+.|...++. +......+.++.+||.++++..-..++ .+-++ ..+...+.++=++. .
T Consensus 32 ~~lv~~li~~Gv~Gi~v-------~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi------~Gv~~~~t~~ai~~a~~ 98 (309)
T cd00952 32 ARLVERLIAAGVDGILT-------MGTFGECATLTWEEKQAFVATVVETVAGRVPVF------VGATTLNTRDTIARTRA 98 (309)
T ss_pred HHHHHHHHHcCCCEEEE-------CcccccchhCCHHHHHHHHHHHHHHhCCCCCEE------EEeccCCHHHHHHHHHH
Confidence 56667766677665542 222223456788888887765421111 11110 11112444554543 4
Q ss_pred HHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhc-CcEEEE
Q 016934 198 SRELGVRGVVAGENYRFGYKAAGDASELVRLCEEY-GMDACI 238 (380)
Q Consensus 198 ~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~-G~~v~i 238 (380)
.+..+++.+.+-.-|-|.....+=++..+++++.. ++.+.+
T Consensus 99 A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lPv~i 140 (309)
T cd00952 99 LLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAI 140 (309)
T ss_pred HHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEE
Confidence 56789999988888777665555566667777765 355544
No 112
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=29.93 E-value=44 Score=29.39 Aligned_cols=48 Identities=21% Similarity=0.447 Sum_probs=29.1
Q ss_pred HHHHHHHHhhCccEEEEcCCCCC-CCCCCCCHHHH----HHHHhhc-CcEEEEEc
Q 016934 192 QFVEKLSRELGVRGVVAGENYRF-GYKAAGDASEL----VRLCEEY-GMDACIIN 240 (380)
Q Consensus 192 ~Fie~L~~~L~vk~IVVG~DFrF-G~~r~Gd~~~L----k~l~~~~-G~~v~iV~ 240 (380)
+.+..++++.++..+|||--..- |.... -.... +++.+.+ +++|+.++
T Consensus 41 ~~l~~li~~~~i~~iVvGlP~~~~G~~~~-~~~~v~~f~~~L~~~~~~ipV~~~D 94 (135)
T PF03652_consen 41 EELKKLIEEYQIDGIVVGLPLNMDGSESE-QARRVRKFAEELKKRFPGIPVILVD 94 (135)
T ss_dssp HHHHHHHHHCCECEEEEEEEBBCTSSC-C-CHHHHHHHHHHHHHHH-TSEEEEEE
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCCccH-HHHHHHHHHHHHHHhcCCCcEEEEC
Confidence 34555788889999999987654 22211 12222 3445566 88887764
No 113
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=29.36 E-value=24 Score=31.58 Aligned_cols=11 Identities=64% Similarity=1.084 Sum_probs=9.9
Q ss_pred EEEeecCccCH
Q 016934 108 VALGKFDALHI 118 (380)
Q Consensus 108 vtIG~FDGvHl 118 (380)
||||.|||.|-
T Consensus 1 VaiGkfDG~~p 11 (136)
T PF14781_consen 1 VAIGKFDGVHP 11 (136)
T ss_pred CeEEEeCCCce
Confidence 68999999996
No 114
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=26.97 E-value=2.1e+02 Score=24.61 Aligned_cols=50 Identities=12% Similarity=0.143 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEc
Q 016934 187 HLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIIN 240 (380)
Q Consensus 187 ~ls~e~Fie~L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~ 240 (380)
.++++.|-..+.-.-.+..+++|-.-+ ..-=...++++.+++|+.+++++
T Consensus 39 ~l~~~~l~~l~~~~~~peiliiGtG~~----~~~~~~~~~~~l~~~gi~vevm~ 88 (114)
T cd05125 39 DITEESLSLFELLEPRPEILVIGTGRK----SRPLSPELRKYFKKLGIAVEVVD 88 (114)
T ss_pred hCCHHHHHHHHhccCCCCEEEEccCCC----CCcCCHHHHHHHHHcCCEEEEEC
Confidence 588888765322222677999996544 22233466677788999998875
No 115
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=26.79 E-value=6.6e+02 Score=25.21 Aligned_cols=79 Identities=18% Similarity=0.217 Sum_probs=49.2
Q ss_pred CChHHHHHHHHhcCCccCeEEEEeccc-----ccc-ccCCCCHHHHHH-HHHHh-hC-ccEEEEcCCCCCCCCCCCCHHH
Q 016934 154 VAKCDRKRVLSSWAPYCGNVAPVEFQI-----QFS-SVRHLSPQQFVE-KLSRE-LG-VRGVVAGENYRFGYKAAGDASE 224 (380)
Q Consensus 154 ~s~~~R~~lL~~lg~~vD~vv~~~F~~-----~Fa-~i~~ls~e~Fie-~L~~~-L~-vk~IVVG~DFrFG~~r~Gd~~~ 224 (380)
++..--.++|+..| +|.++.++.-. -|. -+.++.+...+. ++.+. ++ -..+||+-|- |....
T Consensus 109 isak~~a~ll~~~g--~d~vit~D~H~~~~~~~f~~p~~~l~~~p~l~~~i~~~~~~~~~~vvVsPd~-------G~~~~ 179 (320)
T PRK02269 109 ITSKLVANMLEVAG--VDRLLTVDLHAAQIQGFFDIPVDHLMGAPLIADYFDRRGLVGDDVVVVSPDH-------GGVTR 179 (320)
T ss_pred chHHHHHHHHhhcC--CCEEEEECCChHHHhccccCCchhhhhHHHHHHHHHHhCCCCCCcEEEEECc-------cHHHH
Confidence 34444568898888 89998865421 111 022566665553 34332 32 3568898884 56788
Q ss_pred HHHHHhhcCcEEEEEcc
Q 016934 225 LVRLCEEYGMDACIINS 241 (380)
Q Consensus 225 Lk~l~~~~G~~v~iV~~ 241 (380)
-+.+++.+|..+.+++.
T Consensus 180 A~~lA~~lg~~~~~~~k 196 (320)
T PRK02269 180 ARKLAQFLKTPIAIIDK 196 (320)
T ss_pred HHHHHHHhCCCEEEEEe
Confidence 88889999988766543
No 116
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=26.08 E-value=1.9e+02 Score=27.13 Aligned_cols=90 Identities=20% Similarity=0.250 Sum_probs=52.4
Q ss_pred HHHHHHHHhCCCEEEeecC--cccccccCCCCCCCChHHHHHHHHhcCCccCeEEEEeccccccccCCCCHHHHHHHHHH
Q 016934 122 ELAIQASKIGAPYLLSFIG--MAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQIQFSSVRHLSPQQFVEKLSR 199 (380)
Q Consensus 122 ~LI~~A~~~g~~~VvtF~~--P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD~vv~~~F~~~Fa~i~~ls~e~Fie~L~~ 199 (380)
++++..++.|..+-+++.| |.+. ++.+-..+|.|.+...+..|+ .+.|++..++
T Consensus 96 ~~i~~ik~~g~k~GialnP~T~~~~------------------~~~~l~~vD~VlvMsV~PG~~------Gq~f~~~~~~ 151 (201)
T PF00834_consen 96 ETIKYIKEAGIKAGIALNPETPVEE------------------LEPYLDQVDMVLVMSVEPGFG------GQKFIPEVLE 151 (201)
T ss_dssp HHHHHHHHTTSEEEEEE-TTS-GGG------------------GTTTGCCSSEEEEESS-TTTS------SB--HGGHHH
T ss_pred HHHHHHHHhCCCEEEEEECCCCchH------------------HHHHhhhcCEEEEEEecCCCC------cccccHHHHH
Confidence 5788888888876666654 2211 111112388888888777765 4567766555
Q ss_pred hhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcceeccCCCCCcccCCCCccCCccchHHHHHHHHcC
Q 016934 200 ELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALAMG 275 (380)
Q Consensus 200 ~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~~~~~~~~~~~~ISST~IR~~L~~G 275 (380)
+ +..|+++.++.|..+.+. .+ +-|+...++++.++|
T Consensus 152 K---------------------I~~l~~~~~~~~~~~~I~----vD---------------GGI~~~~~~~~~~aG 187 (201)
T PF00834_consen 152 K---------------------IRELRKLIPENGLDFEIE----VD---------------GGINEENIKQLVEAG 187 (201)
T ss_dssp H---------------------HHHHHHHHHHHTCGSEEE----EE---------------SSESTTTHHHHHHHT
T ss_pred H---------------------HHHHHHHHHhcCCceEEE----EE---------------CCCCHHHHHHHHHcC
Confidence 4 467777777766443332 12 247777788877765
No 117
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=25.87 E-value=38 Score=24.29 Aligned_cols=25 Identities=24% Similarity=0.342 Sum_probs=21.0
Q ss_pred chHHHHHHHHcCCchhhhhhcceee
Q 016934 264 SSTRVRQALAMGDMKYVSELLGRQH 288 (380)
Q Consensus 264 SST~IR~~L~~GdI~~An~LLGrpy 288 (380)
...+|+++|..||++.|-+.+...+
T Consensus 4 ~~~~i~~~i~~g~~~~a~~~~~~~~ 28 (58)
T smart00668 4 ERKRIRELILKGDWDEALEWLSSLK 28 (58)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 3468999999999999998887654
No 118
>PRK04694 Maf-like protein; Reviewed
Probab=25.25 E-value=1.3e+02 Score=28.01 Aligned_cols=37 Identities=14% Similarity=0.203 Sum_probs=23.8
Q ss_pred HHHHHHHHhcCCccCeE-EEEeccccccccCCCCHHHHHHHH
Q 016934 157 CDRKRVLSSWAPYCGNV-APVEFQIQFSSVRHLSPQQFVEKL 197 (380)
Q Consensus 157 ~~R~~lL~~lg~~vD~v-v~~~F~~~Fa~i~~ls~e~Fie~L 197 (380)
..|.++|+.+| ++.. +..+++... ....+|++++..+
T Consensus 9 prR~elL~~~g--~~f~~~~~~idE~~--~~~~~p~~~v~~l 46 (190)
T PRK04694 9 PRRRELLQRLD--VPFQTLQLDVPEVR--AADESPDHYVQRV 46 (190)
T ss_pred HHHHHHHHHCC--CCcEEecCCCCCCC--CCCCCHHHHHHHH
Confidence 35889999998 5543 333444432 3357899998764
No 119
>PRK00648 Maf-like protein; Reviewed
Probab=25.15 E-value=1.5e+02 Score=27.56 Aligned_cols=38 Identities=18% Similarity=0.174 Sum_probs=24.2
Q ss_pred HHHHHHHHhcCCccCeEEE-EeccccccccCCCCHHHHHHHH
Q 016934 157 CDRKRVLSSWAPYCGNVAP-VEFQIQFSSVRHLSPQQFVEKL 197 (380)
Q Consensus 157 ~~R~~lL~~lg~~vD~vv~-~~F~~~Fa~i~~ls~e~Fie~L 197 (380)
..|.++|+.+| ++..++ .++..+- .....+|++++..+
T Consensus 12 prR~elL~~~g--~~f~v~~~~~~dE~-~~~~~~p~~~v~~l 50 (191)
T PRK00648 12 PRRKEILEGFR--IPFEVVPSPFVEES-YPYSLDPEEITLEL 50 (191)
T ss_pred HHHHHHHHHCC--CCeEEEeCCCCCCC-CCCCCCHHHHHHHH
Confidence 35889999998 665544 3333321 13357899998764
No 120
>PF12854 PPR_1: PPR repeat
Probab=24.85 E-value=56 Score=21.59 Aligned_cols=23 Identities=17% Similarity=0.132 Sum_probs=19.8
Q ss_pred cchHHHHHHHHcCCchhhhhhcc
Q 016934 263 VSSTRVRQALAMGDMKYVSELLG 285 (380)
Q Consensus 263 ISST~IR~~L~~GdI~~An~LLG 285 (380)
.=++.|.-+-++|++++|.+++.
T Consensus 9 ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 9 TYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHH
Confidence 34688999999999999999875
No 121
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=24.50 E-value=7.6e+02 Score=25.14 Aligned_cols=163 Identities=17% Similarity=0.231 Sum_probs=89.9
Q ss_pred HHHHHHHHhhccCCCCCCCCCcccccCccccccCCCCCCCCCCCCCCc-eEEEEeecCc-cCHHHHHHHHH---HHHhCC
Q 016934 58 KQRLQQRLVSSSSLQSKSPGEMPTLPSCFSEREDDRELPAEGFSPVAG-GIVALGKFDA-LHIGHRELAIQ---ASKIGA 132 (380)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~vvtIG~FDG-vHlGHq~LI~~---A~~~g~ 132 (380)
.+.|-+++-...+.+- .|.-.++||-.|-.=++ ..++++ -|+.+=..-. +---+.+||-- +++.+.
T Consensus 13 ~~~La~~ia~~l~~~l-----~~~~~~rF~DGE~~V~i----~EsVrg~dVfI~qs~~~pvnd~lmELLi~idA~k~asA 83 (314)
T COG0462 13 NPELAEKIAKRLGIPL-----GKVEVKRFPDGEIYVRI----EESVRGKDVFIIQSTSPPVNDNLMELLIMIDALKRASA 83 (314)
T ss_pred CHHHHHHHHHHhCCCc-----ccceeEEcCCCcEEEEe----cccccCCeEEEEeCCCCCcCHHHHHHHHHHHHHHhcCC
Confidence 3445555554444433 35567888855554444 344555 3333333333 44446666643 344344
Q ss_pred C---EEEeecCcccc-cccCCCCCCCChHHHHHHHHhcCCccCeEEEEec---------cccccccCCCCHHHHH-HHHH
Q 016934 133 P---YLLSFIGMAEV-FGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEF---------QIQFSSVRHLSPQQFV-EKLS 198 (380)
Q Consensus 133 ~---~VvtF~~P~~v-l~~~~~~~l~s~~~R~~lL~~lg~~vD~vv~~~F---------~~~Fa~i~~ls~e~Fi-e~L~ 198 (380)
. .|+.+.+-++- -.+.++.||. ..-=.++|+..| +|.++.++. +..+. ++.+..-+ +.+.
T Consensus 84 ~~It~ViPY~gYARQDk~~~~repIs-aklvA~lL~~aG--~drv~TvDlH~~qiqgfFdipvd---nl~a~p~l~~~~~ 157 (314)
T COG0462 84 KRITAVIPYFGYARQDKAFKPREPIS-AKLVANLLETAG--ADRVLTVDLHAPQIQGFFDIPVD---NLYAAPLLAEYIR 157 (314)
T ss_pred ceEEEEeecchhhccCcccCCCCCEe-HHHHHHHHHHcC--CCeEEEEcCCchhhcccCCCccc---cccchHHHHHHHH
Confidence 3 34544431111 1113344444 333457888888 899887653 33333 56555544 4444
Q ss_pred Hhh-CccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcce
Q 016934 199 REL-GVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSV 242 (380)
Q Consensus 199 ~~L-~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v 242 (380)
.+. .-.-+||..|. |.+..-+.+++.+|..+-+++..
T Consensus 158 ~~~~~~d~vVVSPD~-------Ggv~RAr~~A~~L~~~~a~i~K~ 195 (314)
T COG0462 158 EKYDLDDPVVVSPDK-------GGVKRARALADRLGAPLAIIDKR 195 (314)
T ss_pred HhcCCCCcEEECCCc-------cHHHHHHHHHHHhCCCEEEEEEe
Confidence 442 22469998885 67888899999999888888654
No 122
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=23.92 E-value=2.8e+02 Score=29.38 Aligned_cols=66 Identities=23% Similarity=0.263 Sum_probs=44.1
Q ss_pred cCCccCeEEEEeccccccccCCCCHHHHHHHHHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEE
Q 016934 166 WAPYCGNVAPVEFQIQFSSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACI 238 (380)
Q Consensus 166 lg~~vD~vv~~~F~~~Fa~i~~ls~e~Fie~L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~i 238 (380)
+|.+++.+...+- +. .+++++.-+ .+.+..+..+|||-=...-.+..-|+..|.++++++++.+||
T Consensus 177 lG~~~~~v~~~~~--~~----~id~~~l~~-~i~~~t~~g~vV~~aGtT~~G~iDdi~~ia~ia~~~~i~lHV 242 (460)
T COG0076 177 LGLGLRRVPTVPT--DY----RIDVDALEE-AIDENTIGGVVVGTAGTTDTGSIDDIEELADIAEEYGIWLHV 242 (460)
T ss_pred hCCCceeEEeccC--cc----ccCHHHHHH-HHHhhccCceEEEEecCCCCCccCCHHHHHHHHHHcCCcEEE
Confidence 4434666665542 22 488888655 445554444667665555556677899999999999998887
No 123
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=23.76 E-value=7.7e+02 Score=24.95 Aligned_cols=148 Identities=18% Similarity=0.201 Sum_probs=77.9
Q ss_pred ccccCccccccCCCCCCCCCCCCCCc-eEEEEeecCc-cCHHHHHHHH--H-HHHhCCC---EEEeecC-cccccccCCC
Q 016934 80 PTLPSCFSEREDDRELPAEGFSPVAG-GIVALGKFDA-LHIGHRELAI--Q-ASKIGAP---YLLSFIG-MAEVFGWEPR 150 (380)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~vvtIG~FDG-vHlGHq~LI~--~-A~~~g~~---~VvtF~~-P~~vl~~~~~ 150 (380)
++-...|+-.|-.-.+. ..+++ .|+.+..... ++--..+|+- . +++.+.. +|+.|-+ .+.--...+.
T Consensus 35 ~~~~~~FpdGE~~v~i~----~~vrg~dV~ivqs~~~p~nd~l~eLll~~~alr~~~a~~i~~ViPYl~YaRQDr~~~~~ 110 (332)
T PRK00553 35 EIVIQKFADGETYIRFD----ESVRNKDVVIFQSTCSPVNDSLMELLIAIDALKRGSAKSITAILPYYGYARQDRKTAGR 110 (332)
T ss_pred eeEEEECCCCCEEEEEC----CCCCCCEEEEEcCCCCCCchHHHHHHHHHHHHHHcCCCeEEEEeeccccchhhcccCCC
Confidence 34456677444433442 33343 5667777643 3333333332 3 4455554 3444444 1110001122
Q ss_pred CCCCChHHHHHHHHhcCCccCeEEEEeccc----c-cc-ccCCCCHHH-HHHHHHHhhC-ccEEEEcCCCCCCCCCCCCH
Q 016934 151 APIVAKCDRKRVLSSWAPYCGNVAPVEFQI----Q-FS-SVRHLSPQQ-FVEKLSRELG-VRGVVAGENYRFGYKAAGDA 222 (380)
Q Consensus 151 ~~l~s~~~R~~lL~~lg~~vD~vv~~~F~~----~-Fa-~i~~ls~e~-Fie~L~~~L~-vk~IVVG~DFrFG~~r~Gd~ 222 (380)
. .++..--.++|+..| +|.++.++.-. . |+ .+.++++.. |.+++.+..+ -.-+|||.|- |..
T Consensus 111 e-~isak~vA~ll~~~g--~d~vit~DlH~~~i~~~F~ipv~~l~a~~~~~~~~~~~~~~~~~vvVsPD~-------gg~ 180 (332)
T PRK00553 111 E-PITSKLVADLLTKAG--VTRVTLTDIHSDQTQGFFDIPVDILRTYHVFLSRVLELLGKKDLVVVSPDY-------GGV 180 (332)
T ss_pred C-CccHHHHHHHHHhcC--CCEEEEEeCChHHHHhhcCCCcceeechHHHHHHHHHhcCCCCeEEEEECC-------CcH
Confidence 2 234444567899888 89998876421 1 11 122455544 4555544332 3468999884 567
Q ss_pred HHHHHHHhhcCcEEEEEcc
Q 016934 223 SELVRLCEEYGMDACIINS 241 (380)
Q Consensus 223 ~~Lk~l~~~~G~~v~iV~~ 241 (380)
..-+.+++.+|....+++.
T Consensus 181 ~rA~~lA~~lg~~~~vi~K 199 (332)
T PRK00553 181 KRARLIAESLELPLAIIDK 199 (332)
T ss_pred HHHHHHHHHhCCCEEEEEE
Confidence 7778888888988777654
No 124
>PF06989 BAALC_N: BAALC N-terminus; InterPro: IPR009728 This entry represents the mammalian BAALC proteins. BAALC (brain and acute leukaemia, cytoplasmic) is highly conserved among mammals, but is absent from lower organisms. Two isoforms are specifically expressed in neuroectoderm-derived tissues, but not in tumours or cancer cell lines of non-neural tissue origin. It has been shown that blasts from a subset of patients with acute leukaemia greatly overexpress eight different BAALC transcripts, resulting in five protein isoforms. Among patients with acute myeloid leukaemia, those overexpressing BAALC show distinctly poor prognosis, pointing to a key role of the BAALC products in leukaemia. It has been suggested that BAALC is a gene implicated in both neuroectodermal and hematopoietic cell functions [].; GO: 0005737 cytoplasm
Probab=23.62 E-value=35 Score=25.35 Aligned_cols=9 Identities=44% Similarity=0.427 Sum_probs=6.4
Q ss_pred CCCCccccc
Q 016934 1 MLGGSSRIS 9 (380)
Q Consensus 1 ~~~~~~~~~ 9 (380)
|=|||||.-
T Consensus 1 mgcggsrad 9 (53)
T PF06989_consen 1 MGCGGSRAD 9 (53)
T ss_pred CCCCccccc
Confidence 668888764
No 125
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=23.26 E-value=3.2e+02 Score=26.37 Aligned_cols=129 Identities=13% Similarity=0.101 Sum_probs=70.6
Q ss_pred HHHHHHHHHhCCCEEEeecCcccccccCCCCCCCChHHHHHHHHhcCCccC-eE-EEEeccccccccCCCCHHHHHHH--
Q 016934 121 RELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCG-NV-APVEFQIQFSSVRHLSPQQFVEK-- 196 (380)
Q Consensus 121 q~LI~~A~~~g~~~VvtF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD-~v-v~~~F~~~Fa~i~~ls~e~Fie~-- 196 (380)
.++++...+.|...++..- .......++.+||.++++.....++ .+ ++.- +...+.++=++.
T Consensus 25 ~~~i~~l~~~Gv~gl~~~G-------stGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~g-------v~~~st~~~i~~a~ 90 (289)
T PF00701_consen 25 KRLIDFLIEAGVDGLVVLG-------STGEFYSLTDEERKELLEIVVEAAAGRVPVIAG-------VGANSTEEAIELAR 90 (289)
T ss_dssp HHHHHHHHHTTSSEEEESS-------TTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEE-------EESSSHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEECC-------CCcccccCCHHHHHHHHHHHHHHccCceEEEec-------CcchhHHHHHHHHH
Confidence 3455555666777654332 1122345788888887665421111 11 1111 113455555553
Q ss_pred HHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcceeccCCCCCcccCCCCccCCccchHHHHHHHHcCC
Q 016934 197 LSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALAMGD 276 (380)
Q Consensus 197 L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~~~~~~~~~~~~ISST~IR~~L~~Gd 276 (380)
..+.++++.+++-.-|.+.....+=++..+++++.-+..+.+-..-. .-+..+|...++++.+..+
T Consensus 91 ~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~pi~iYn~P~--------------~tg~~ls~~~l~~L~~~~n 156 (289)
T PF00701_consen 91 HAQDAGADAVLVIPPYYFKPSQEELIDYFRAIADATDLPIIIYNNPA--------------RTGNDLSPETLARLAKIPN 156 (289)
T ss_dssp HHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHHSSSEEEEEEBHH--------------HHSSTSHHHHHHHHHTSTT
T ss_pred HHhhcCceEEEEeccccccchhhHHHHHHHHHHhhcCCCEEEEECCC--------------ccccCCCHHHHHHHhcCCc
Confidence 45688999999988887766555555566677776666655432100 0135688888887776444
Q ss_pred c
Q 016934 277 M 277 (380)
Q Consensus 277 I 277 (380)
|
T Consensus 157 v 157 (289)
T PF00701_consen 157 V 157 (289)
T ss_dssp E
T ss_pred E
Confidence 3
No 126
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=22.88 E-value=2.2e+02 Score=27.16 Aligned_cols=44 Identities=23% Similarity=0.378 Sum_probs=30.8
Q ss_pred CCCCCCCCCCC---CHHHHHHHHhhcCcEEEEEcceeccCCCCCcccCCCCccCCccchHHHHHHHHc
Q 016934 210 ENYRFGYKAAG---DASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALAM 274 (380)
Q Consensus 210 ~DFrFG~~r~G---d~~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~~~~~~~~~~~~ISST~IR~~L~~ 274 (380)
.+|.--..|.| |++.|++..+++||+|.+.. ..+...|++.|++
T Consensus 17 ~~f~~~~~r~g~~~D~~~l~~~f~~lgF~V~~~~---------------------dlt~~em~~~l~~ 63 (241)
T smart00115 17 ENFHSLPRRNGTDVDAENLTELFQSLGYEVHVKN---------------------NLTAEEMLEELKE 63 (241)
T ss_pred ccCCCCcCCCCcHHHHHHHHHHHHHCCCEEEEec---------------------CCCHHHHHHHHHH
Confidence 35543344555 78889999999999987753 3567777777753
No 127
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=22.63 E-value=7.4e+02 Score=24.33 Aligned_cols=109 Identities=16% Similarity=0.131 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhCCCEEEeecCcccccccCCCCCCCChHHHHHHHHhcCCccCeEEEEeccccccccCCCCHHHHHHH-
Q 016934 118 IGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQIQFSSVRHLSPQQFVEK- 196 (380)
Q Consensus 118 lGHq~LI~~A~~~g~~~VvtF~~P~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD~vv~~~F~~~Fa~i~~ls~e~Fie~- 196 (380)
-+-.++++...+.|...++.. ......+.++.+||.++++.....++.=+.+-.. +.. +.++=++.
T Consensus 28 ~~l~~li~~l~~~Gv~Gi~~~-------GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~g-----v~~-~t~~~i~~~ 94 (303)
T PRK03620 28 AAYREHLEWLAPYGAAALFAA-------GGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAG-----AGG-GTAQAIEYA 94 (303)
T ss_pred HHHHHHHHHHHHcCCCEEEEC-------cCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEe-----cCC-CHHHHHHHH
Confidence 356777777777777755422 2122335678888887776542111110000001 111 23333432
Q ss_pred -HHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEE
Q 016934 197 -LSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACII 239 (380)
Q Consensus 197 -L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV 239 (380)
..+.++++.+++-.-|.+.....+=.+..+++++..++.+.+-
T Consensus 95 ~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~~lpi~lY 138 (303)
T PRK03620 95 QAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKSTDLGVIVY 138 (303)
T ss_pred HHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 3467888888888887664433333444556666655555443
No 128
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=22.52 E-value=4.9e+02 Score=24.01 Aligned_cols=72 Identities=11% Similarity=0.196 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcceeccCCCCCcccCCCCccCCccchH
Q 016934 187 HLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSST 266 (380)
Q Consensus 187 ~ls~e~Fie~L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~~~~~~~~~~~~ISST 266 (380)
..++.++++. +..++++.+++=..-+=|...-.|.+.++++++..++.+.. . +..-|..
T Consensus 145 ~~~~~e~~~~-~~~~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~~~ipvia------~--------------GGi~~~~ 203 (233)
T PRK00748 145 GVTAEDLAKR-FEDAGVKAIIYTDISRDGTLSGPNVEATRELAAAVPIPVIA------S--------------GGVSSLD 203 (233)
T ss_pred CCCHHHHHHH-HHhcCCCEEEEeeecCcCCcCCCCHHHHHHHHHhCCCCEEE------e--------------CCCCCHH
Confidence 4566666664 35567776555444444444445677777777654433211 1 1333446
Q ss_pred HHHHHHHcCCchh
Q 016934 267 RVRQALAMGDMKY 279 (380)
Q Consensus 267 ~IR~~L~~GdI~~ 279 (380)
.++++++.|.++.
T Consensus 204 di~~~~~~g~~~g 216 (233)
T PRK00748 204 DIKALKGLGAVEG 216 (233)
T ss_pred HHHHHHHcCCccE
Confidence 7888888776443
No 129
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=22.36 E-value=1.1e+02 Score=25.55 Aligned_cols=35 Identities=23% Similarity=0.400 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHhhcCcEEEEEcceeccCCCCCcccCCCCccCCccchHHHHHHHH
Q 016934 219 AGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALA 273 (380)
Q Consensus 219 ~Gd~~~Lk~l~~~~G~~v~iV~~v~~~~~~~~~~~~~~~~~~~~ISST~IR~~L~ 273 (380)
+|.+++|+++++..++++.+++ ..+|.+..|.+=+
T Consensus 43 ~GK~eei~~~~~~~~~d~vvfd--------------------~~Lsp~Q~rNLe~ 77 (95)
T PF13167_consen 43 SGKVEEIKELIEELDADLVVFD--------------------NELSPSQQRNLEK 77 (95)
T ss_pred hhHHHHHHHHHhhcCCCEEEEC--------------------CCCCHHHHHHHHH
Confidence 5789999999999999988774 3588888887644
No 130
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=22.28 E-value=29 Score=28.62 Aligned_cols=55 Identities=20% Similarity=0.187 Sum_probs=39.3
Q ss_pred eecceeeccchhhhhchhhHHHHHHHHhhccCCCCCCCCCcccccC-ccccccCCCCC
Q 016934 39 QLSSFMVRPLSAAIIGENRKQRLQQRLVSSSSLQSKSPGEMPTLPS-CFSEREDDREL 95 (380)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 95 (380)
.|+++|+.|....-.| +.+.+.|+++-.--...+ ..|..=+.+. .-.|.-+++.+
T Consensus 16 ~Ltrwl~Ei~~GVyVg-~~s~rVRe~lW~~v~~~~-~~G~a~m~~~~~neqG~~~~t~ 71 (86)
T PF09707_consen 16 FLTRWLLEIRPGVYVG-NVSARVRERLWERVTEWI-GDGSAVMVWSDNNEQGFDFRTL 71 (86)
T ss_pred hhhheeEecCCCcEEc-CCCHHHHHHHHHHHHhhC-CCccEEEEEccCCCCCEEEEEe
Confidence 4789999999999999 999999999987776665 4455555544 33444444444
No 131
>cd01674 Homoaconitase_Swivel Homoaconitase swivel domain. This family includes homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. This is the swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=22.05 E-value=1.1e+02 Score=27.10 Aligned_cols=35 Identities=23% Similarity=0.270 Sum_probs=26.7
Q ss_pred ccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcc
Q 016934 203 VRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINS 241 (380)
Q Consensus 203 vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~ 241 (380)
-+.||.|+||-.|.-|.--+-.|+ .+|+.+.+-+.
T Consensus 46 gdilVaG~nFG~GSSRE~A~~al~----~~Gi~~VIA~S 80 (129)
T cd01674 46 GDILVSGFNFGTGSSREQAATALL----AKGIPLVVSGS 80 (129)
T ss_pred CCEEEeCCccCCCCcHHHHHHHHH----HcCccEEEech
Confidence 478999999999988876666564 56888766654
No 132
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=21.58 E-value=3.6e+02 Score=26.64 Aligned_cols=82 Identities=13% Similarity=0.093 Sum_probs=50.6
Q ss_pred HHHHHHHhcCCccCeEEEEeccccccccCCCCHHHHHHHHHHhhCccEEEEcCCCC--CC----------CCCCCCHHHH
Q 016934 158 DRKRVLSSWAPYCGNVAPVEFQIQFSSVRHLSPQQFVEKLSRELGVRGVVAGENYR--FG----------YKAAGDASEL 225 (380)
Q Consensus 158 ~R~~lL~~lg~~vD~vv~~~F~~~Fa~i~~ls~e~Fie~L~~~L~vk~IVVG~DFr--FG----------~~r~Gd~~~L 225 (380)
+..+.+-.+| +|.|++-. ..+.. -.+.| +|++.+.++++...||++=|.+ .| .....++.++
T Consensus 95 e~i~~~l~~G--a~rViigT--~Av~~-~~~~p-~~v~~~~~~~G~~~IvvsiD~k~~~g~~~Va~~GW~~~t~~~~~e~ 168 (262)
T PLN02446 95 ENAMSYLDAG--ASHVIVTS--YVFRD-GQIDL-ERLKDLVRLVGKQRLVLDLSCRKKDGRYYVVTDRWQKFSDLAVDEE 168 (262)
T ss_pred HHHHHHHHcC--CCEEEEch--HHHhC-CCCCH-HHHHHHHHHhCCCCEEEEEEEEecCCCEEEEECCCcccCCCCHHHH
Confidence 5665555667 89888632 11110 00123 5788899999999999999998 77 2223355654
Q ss_pred -HHHHhhcCcEEEEEcceeccC
Q 016934 226 -VRLCEEYGMDACIINSVMDKH 246 (380)
Q Consensus 226 -k~l~~~~G~~v~iV~~v~~~~ 246 (380)
.++ .+.|+.-.++..+..+|
T Consensus 169 ~~~~-~~~g~~eii~TdI~rDG 189 (262)
T PLN02446 169 TLEF-LAAYCDEFLVHGVDVEG 189 (262)
T ss_pred HHHH-HHhCCCEEEEEEEcCCC
Confidence 444 45567666666665554
No 133
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=21.45 E-value=57 Score=28.23 Aligned_cols=39 Identities=23% Similarity=0.297 Sum_probs=27.2
Q ss_pred EEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcceec
Q 016934 206 VVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMD 244 (380)
Q Consensus 206 IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v~~ 244 (380)
+++|..-..|.....|...|+++.+++|+++.....+.+
T Consensus 3 i~~GdEl~~g~~~d~n~~~l~~~l~~~G~~v~~~~~v~D 41 (144)
T PF00994_consen 3 ISTGDELLSGQIRDSNGPFLAALLEELGIEVIRYGIVPD 41 (144)
T ss_dssp EEECHHHHTTSSEBHHHHHHHHHHHHTTEEEEEEEEEES
T ss_pred EEECccCcCCceEEhHHHHHHHHHHHcCCeeeEEEEECC
Confidence 445555556666677888888888999988876655543
No 134
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=21.25 E-value=8.5e+02 Score=24.51 Aligned_cols=124 Identities=18% Similarity=0.229 Sum_probs=68.4
Q ss_pred eEEEEeecCcc---CHHHHHHHHHH-HHhCCC---EEEeecC-c--ccccccCCCCCCCChHHHHHHHHhcCCccCeEEE
Q 016934 106 GIVALGKFDAL---HIGHRELAIQA-SKIGAP---YLLSFIG-M--AEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAP 175 (380)
Q Consensus 106 ~vvtIG~FDGv---HlGHq~LI~~A-~~~g~~---~VvtF~~-P--~~vl~~~~~~~l~s~~~R~~lL~~lg~~vD~vv~ 175 (380)
.|+.+...... ++=...++..| ++.+.. +|+.|-+ . .+.+ .+.. .++..--.++|+..| +|.++.
T Consensus 58 dV~ii~s~~~~~nd~l~eLll~~~alr~~~a~~i~lViPYl~YaRQDr~~--~~ge-~isak~~a~lL~~~g--~d~vit 132 (323)
T PRK02458 58 DIYIIQSTSFPVNDHLWELLIMIDACKRASANTVNVVLPYFGYARQDRIA--KPRE-PITAKLVANMLVKAG--VDRVLT 132 (323)
T ss_pred eEEEEecCCCCCchHHHHHHHHHHHHHHcCCceEEEEEeccccchhhccc--CCCC-CchHHHHHHHHhhcC--CCeEEE
Confidence 56777776433 34444444444 455654 3444444 1 1111 1111 334444568898888 899887
Q ss_pred Eeccc----c-cc-ccCCCCHHH-HHHHHHHh-hC-ccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcc
Q 016934 176 VEFQI----Q-FS-SVRHLSPQQ-FVEKLSRE-LG-VRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINS 241 (380)
Q Consensus 176 ~~F~~----~-Fa-~i~~ls~e~-Fie~L~~~-L~-vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~ 241 (380)
++.-. . |. .+.++.|.. |.+.+.+. ++ -.-+|||-|- |....-+.+++.+|+.+.++..
T Consensus 133 vD~H~~~i~~~F~~p~~nl~~~p~~~~~l~~~~~~~~~~vvV~pd~-------Ga~~~A~~la~~L~~~~~~~~~ 200 (323)
T PRK02458 133 LDLHAVQVQGFFDIPVDNLFTVPLFAKHYCKKGLSGSDVVVVSPKN-------SGIKRARSLAEYLDAPIAIIDY 200 (323)
T ss_pred EecCcHHhhccccCCceEEEEHHHHHHHHHHhCCCCCceEEEEECC-------ChHHHHHHHHHHhCCCEEEEEE
Confidence 65421 1 11 012555554 44444332 32 3568898884 5677778888889988876653
No 135
>cd01579 AcnA_Bact_Swivel Bacterial Aconitase-like swivel domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. This distinct subfamily is found only in bacteria and archea. Its exact characteristics are not known.
Probab=20.91 E-value=91 Score=27.18 Aligned_cols=49 Identities=29% Similarity=0.440 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcce
Q 016934 188 LSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSV 242 (380)
Q Consensus 188 ls~e~Fie~L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v 242 (380)
++| +|+.. .+.-+...||+|.||-.|.-|..-+..|+ .+|+.+.+-+.+
T Consensus 36 ~~p-~f~~~-~~~~~~~iiVaG~nFG~GSSRE~A~~al~----~~Gi~aVIA~SF 84 (121)
T cd01579 36 VDP-TFAER-AKAAGPGFIVGGENYGQGSSREHAALAPM----YLGVRAVLAKSF 84 (121)
T ss_pred CCc-hHHhh-cccCCCeEEEcCCcCCCCccHHHHHHHHH----HHCCCEEEEccH
Confidence 444 56652 22223457999999999888876666665 467887776653
No 136
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=20.81 E-value=8.4e+02 Score=24.27 Aligned_cols=79 Identities=13% Similarity=0.198 Sum_probs=49.6
Q ss_pred CChHHHHHHHHhcCCccCeEEEEeccc----c-cc-ccCCCCHHHHH-HHHHHhh-CccEEEEcCCCCCCCCCCCCHHHH
Q 016934 154 VAKCDRKRVLSSWAPYCGNVAPVEFQI----Q-FS-SVRHLSPQQFV-EKLSREL-GVRGVVAGENYRFGYKAAGDASEL 225 (380)
Q Consensus 154 ~s~~~R~~lL~~lg~~vD~vv~~~F~~----~-Fa-~i~~ls~e~Fi-e~L~~~L-~vk~IVVG~DFrFG~~r~Gd~~~L 225 (380)
++..--.++|+..| +|.++.++.-. . |+ .+.++++...+ +.+.+.+ .-.-++|+-| .|.+..-
T Consensus 93 isak~va~lL~~~g--~d~vitvD~H~~~~~~~f~~p~~~l~~~~~la~~i~~~~~~~~~vvVspd-------~Ga~~~a 163 (304)
T PRK03092 93 ISARLVADLFKTAG--ADRIMTVDLHTAQIQGFFDGPVDHLFAMPLLADYVRDKYDLDNVTVVSPD-------AGRVRVA 163 (304)
T ss_pred ccHHHHHHHHHhcC--CCeEEEEecChHHHHhhcCCCeeeEechHHHHHHHHHhcCCCCcEEEEec-------CchHHHH
Confidence 44455568899888 89998866321 1 11 12357776654 4454443 2456889888 3456677
Q ss_pred HHHHhhcC-cEEEEEcc
Q 016934 226 VRLCEEYG-MDACIINS 241 (380)
Q Consensus 226 k~l~~~~G-~~v~iV~~ 241 (380)
+.+++.++ .++.++..
T Consensus 164 ~~la~~L~~~~~~~i~k 180 (304)
T PRK03092 164 EQWADRLGGAPLAFIHK 180 (304)
T ss_pred HHHHHHcCCCCEEEEEE
Confidence 77888888 77777754
No 137
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=20.78 E-value=7.2e+02 Score=23.51 Aligned_cols=97 Identities=15% Similarity=0.257 Sum_probs=57.6
Q ss_pred ChHHHHHHHHhcCCccCeEEEEeccccccccCCCCHHHHHHHHHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCc
Q 016934 155 AKCDRKRVLSSWAPYCGNVAPVEFQIQFSSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGM 234 (380)
Q Consensus 155 s~~~R~~lL~~lg~~vD~vv~~~F~~~Fa~i~~ls~e~Fie~L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~ 234 (380)
+..+-.+.+...| ++.+++.+.+.+=. .+-.-.+.++.+.+..++..++.| +..+.++++++.+..|+
T Consensus 154 ~~~~~~~~~~~~g--~~~ii~~~i~~~g~--~~g~d~~~i~~~~~~~~ipvia~G--------Gv~s~~d~~~~~~~~G~ 221 (253)
T PRK02083 154 DAVEWAKEVEELG--AGEILLTSMDRDGT--KNGYDLELTRAVSDAVNVPVIASG--------GAGNLEHFVEAFTEGGA 221 (253)
T ss_pred CHHHHHHHHHHcC--CCEEEEcCCcCCCC--CCCcCHHHHHHHHhhCCCCEEEEC--------CCCCHHHHHHHHHhCCc
Confidence 4445556677777 88888755432111 011223556666666677766665 34577888777666788
Q ss_pred EEEEEcceeccCCCCCcccCCCCccCCccchHHHHHHHHcCCch
Q 016934 235 DACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALAMGDMK 278 (380)
Q Consensus 235 ~v~iV~~v~~~~~~~~~~~~~~~~~~~~ISST~IR~~L~~GdI~ 278 (380)
...++-..... ..++=..+++.++...|+
T Consensus 222 ~gvivg~al~~---------------~~~~~~~~~~~~~~~~~~ 250 (253)
T PRK02083 222 DAALAASIFHF---------------GEITIGELKAYLAEQGIP 250 (253)
T ss_pred cEEeEhHHHHc---------------CCCCHHHHHHHHHHCCCc
Confidence 76666554333 346666777777765543
No 138
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=20.58 E-value=2.9e+02 Score=23.30 Aligned_cols=48 Identities=15% Similarity=0.196 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEc
Q 016934 187 HLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIIN 240 (380)
Q Consensus 187 ~ls~e~Fie~L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~ 240 (380)
.+++++|-..+ .+++..+++|-- .+..--...+.+..+++|+.+++++
T Consensus 39 ~l~~e~l~~l~--~~~peiliiGTG----~~~~~~~~~~~~~l~~~gi~vE~m~ 86 (109)
T cd05560 39 DLTAAHFEALL--ALQPEVILLGTG----ERQRFPPPALLAPLLARGIGVEVMD 86 (109)
T ss_pred cCCHHHHHHHH--hcCCCEEEEecC----CCCCcCCHHHHHHHHHcCCeEEEEC
Confidence 58888876533 346899999853 3333234666677788999998875
No 139
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=20.41 E-value=2.5e+02 Score=27.81 Aligned_cols=62 Identities=18% Similarity=0.213 Sum_probs=36.8
Q ss_pred hcCCccCeEEEE--eccccccccCCCCHHHHHHHHHHhhCccEEEEcCCCCCCCCCCCCHHHHHHHHhhcCcEEEEEcce
Q 016934 165 SWAPYCGNVAPV--EFQIQFSSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSV 242 (380)
Q Consensus 165 ~lg~~vD~vv~~--~F~~~Fa~i~~ls~e~Fie~L~~~L~vk~IVVG~DFrFG~~r~Gd~~~Lk~l~~~~G~~v~iV~~v 242 (380)
.++...+.++.. ||+.++. ..|+++++++.||.= | .+.+|....=.+-|.+.|+.|..|++-
T Consensus 168 ~~~~p~~~Iia~~GPfs~~~n-----------~all~q~~id~vItK-~----SG~~Gg~~~Ki~aA~eLgi~VI~I~Rp 231 (257)
T COG2099 168 DLGVPPARIIAMRGPFSEEDN-----------KALLEQYRIDVVVTK-N----SGGAGGTYEKIEAARELGIPVIMIERP 231 (257)
T ss_pred hcCCChhhEEEecCCcChHHH-----------HHHHHHhCCCEEEEc-c----CCcccCcHHHHHHHHHcCCcEEEEecC
Confidence 334334555555 6665433 226677899999872 1 223322233334578999999999764
No 140
>PRK01526 Maf-like protein; Reviewed
Probab=20.33 E-value=1.7e+02 Score=27.74 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=24.2
Q ss_pred HHHHHHHHhcCCcc-Ce-EEEEeccccccccCCCCHHHHHHHH
Q 016934 157 CDRKRVLSSWAPYC-GN-VAPVEFQIQFSSVRHLSPQQFVEKL 197 (380)
Q Consensus 157 ~~R~~lL~~lg~~v-D~-vv~~~F~~~Fa~i~~ls~e~Fie~L 197 (380)
..|.++|+.+| + +. ++..+|+... +...+|++++..+
T Consensus 17 prR~elL~~~g--~~~~~v~~~~iDE~~--~~~~~p~~~v~~l 55 (205)
T PRK01526 17 PARIELLNRIK--IIPSQIIPADIDETP--NLRELPAPLAIRL 55 (205)
T ss_pred HHHHHHHHhcC--CCCceEecCCCCCCC--CCCCCHHHHHHHH
Confidence 35889999998 5 33 4445555432 3356799998764
No 141
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=20.30 E-value=7.3e+02 Score=23.54 Aligned_cols=15 Identities=7% Similarity=0.007 Sum_probs=7.8
Q ss_pred HHHHHHHHhCCCEEE
Q 016934 122 ELAIQASKIGAPYLL 136 (380)
Q Consensus 122 ~LI~~A~~~g~~~Vv 136 (380)
++++.+++.|...++
T Consensus 120 ~~~~~~~~~Gl~~~~ 134 (244)
T PRK13125 120 KYVEIIKNKGLKPVF 134 (244)
T ss_pred HHHHHHHHcCCCEEE
Confidence 445555555555444
Done!