RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 016934
(380 letters)
>gnl|CDD|185679 cd02064, FAD_synthetase_N, FAD synthetase, N-terminal domain of the
bifunctional enzyme. FAD synthetase_N. N-terminal
domain of the bifunctional riboflavin biosynthesis
protein riboflavin kinase/FAD synthetase. These enzymes
have both ATP:riboflavin 5'-phosphotransferase and
ATP:FMN-adenylyltransferase activities. The N-terminal
domain is believed to play a role in the adenylylation
reaction of FAD synthetases. The C-terminal domain is
thought to have kinase activity. FAD synthetase is
present among all kingdoms of life. However, the
bifunctional enzyme is not found in mammals, which use
separate enzymes for FMN and FAD formation.
Length = 180
Score = 131 bits (332), Expect = 6e-37
Identities = 57/195 (29%), Positives = 93/195 (47%), Gaps = 26/195 (13%)
Query: 107 IVALGKFDALHIGHRELAIQASKI-----GAPYLLSFIGMAEVF--GWEPRAPIVAKCDR 159
+VA+G FD +H+GH+ L KI +L+F + + ++
Sbjct: 2 VVAIGNFDGVHLGHQALIKTLKKIARERGLPSAVLTFDPHPREVFLPDKAPPRLTTLEEK 61
Query: 160 KRVLSSWAPYCGNVAPVEFQIQFSSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAA 219
+L S V + F +F+S LS ++FVE L +L + VV G ++RFG +
Sbjct: 62 LELLESLGVDYLLV--LPFDKEFAS---LSAEEFVEDLLVKLNAKHVVVGFDFRFGKGRS 116
Query: 220 GDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALAMGDMKY 279
GDA L L ++YG + ++ V + +VSSTR+R+ALA GD++
Sbjct: 117 GDAELLKELGKKYGFEVTVVPPVTL--------------DGERVSSTRIREALAEGDVEL 162
Query: 280 VSELLGRQHRLILTV 294
+ELLGR + + V
Sbjct: 163 ANELLGRPYSIEGRV 177
>gnl|CDD|235536 PRK05627, PRK05627, bifunctional riboflavin kinase/FMN
adenylyltransferase; Reviewed.
Length = 305
Score = 111 bits (280), Expect = 4e-28
Identities = 58/196 (29%), Positives = 92/196 (46%), Gaps = 37/196 (18%)
Query: 108 VALGKFDALHIGHRELAIQASKIGAPYLLSFIGMA--------EVFGWE-PRAPIVAKCD 158
+ +G FD +H GH+ L +A +I + EVF + A + D
Sbjct: 17 LTIGNFDGVHRGHQALLARAREIAR--ERGLPSVVMTFEPHPREVFAPDKAPARLTPLRD 74
Query: 159 RKRVLSSWAPYCG--NVAPVEFQIQFSSVRHLSPQQFVEKLSRE-LGVRGVVAGENYRFG 215
+ +L+ G V + F +F+ LS ++F+E L + L + VV G ++RFG
Sbjct: 75 KAELLAE----LGVDYVLVLPFDEEFA---KLSAEEFIEDLLVKGLNAKHVVVGFDFRFG 127
Query: 216 YKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQ-VSSTRVRQALAM 274
K AGD L +E+G + I+ V KE G+ VSST +RQALA
Sbjct: 128 KKRAGDFELLKEAGKEFGFEVTIVPEV---------------KEDGERVSSTAIRQALAE 172
Query: 275 GDMKYVSELLGRQHRL 290
GD++ ++LLGR + +
Sbjct: 173 GDLELANKLLGRPYSI 188
>gnl|CDD|223274 COG0196, RibF, FAD synthase [Coenzyme metabolism].
Length = 304
Score = 97.7 bits (244), Expect = 5e-23
Identities = 63/250 (25%), Positives = 117/250 (46%), Gaps = 47/250 (18%)
Query: 105 GGIVALGKFDALHIGHRELAIQASKIGAPY-----LLSF--IGMAEVFGW-EPRAPIVAK 156
G ++ +G FD +H+GH++L QA + +++F E+ +P +
Sbjct: 16 GCVLTIGNFDGVHLGHQKLLAQALEAAEKRGLPVVVITFEPHPR-ELLKPDKPPTRLTPL 74
Query: 157 CDRKRVLSSWAPYCGN--VAPVEFQIQFSSVRHLSPQQFVEKLSRELGVRGVVAGENYRF 214
++ R+L+ G + ++F ++F++ LS ++FVE L +L V+ +V G ++RF
Sbjct: 75 REKIRLLAG----YGVDALVVLDFDLEFAN---LSAEEFVELLVEKLNVKHIVVGFDFRF 127
Query: 215 GYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALAM 274
G G+A L L ++ G + I+ + ++E ++SST +RQAL
Sbjct: 128 GKGRQGNAELLRELGQK-GFEVTIVPKI--------------NEEGIRISSTAIRQALRE 172
Query: 275 GDMKYVSELLGRQHRLILTVNDHDELIS------TSNKHRVSVPKSCLLNLPPKEGFYGN 328
GD++ ++LLGR + + V H + + T+N + N+ P G Y
Sbjct: 173 GDLEEANKLLGRPYSIEGKVV-HGQKLGRTLGFPTAN-----IYLKD--NVLPAFGVYAV 224
Query: 329 SVLLFGEENP 338
V L G P
Sbjct: 225 RVKLDGGVYP 234
>gnl|CDD|219090 pfam06574, FAD_syn, FAD synthetase. This family corresponds to the
N terminal domain of the bifunctional enzyme riboflavin
kinase / FAD synthetase. These enzymes have both
ATP:riboflavin 5'-phospho transferase and
ATP:FMN-adenylyltransferase activity. They catalyze the
5'-phosphorylation of riboflavin to FMN and the
adenylylation of FMN to FAD. This domain is thought to
have the flavin mononucleotide (FMN) adenylyltransferase
activity.
Length = 158
Score = 78.0 bits (193), Expect = 3e-17
Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 33/174 (18%)
Query: 105 GGIVALGKFDALHIGHRELAIQASKIGAPYLLSFIGM------AEVFGWEPRAPIVAKCD 158
G +V +G FD +H+GH+ L A +I L + + EVF + +
Sbjct: 7 GSVVTIGNFDGVHLGHQALIAHAKEIARELGLPSVVVTFDPHPREVFAPDSAPFRLTTLR 66
Query: 159 RK-RVLSSW---APYCGNVAPVEFQIQFSSVRHLSPQQFVEKLSRE-LGVRGVVAGENYR 213
K +L+ + F +F+S LS ++F+E + + LG + VV G ++R
Sbjct: 67 EKIELLAELGVDRLLV-----LPFDKEFAS---LSAEEFIENILVDGLGAKHVVVGFDFR 118
Query: 214 FGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTR 267
FG AG+ L L +YG + ++ V + K +SSTR
Sbjct: 119 FGKGRAGNVELLRELGAKYGFEVTVVPPV----------TLDGEK----ISSTR 158
>gnl|CDD|232818 TIGR00083, ribF, riboflavin kinase/FMN adenylyltransferase.
multifunctional enzyme: riboflavin kinase (EC 2.7.1.26)
(flavokinase) / FMN adenylyltransferase (EC 2.7.7.2)
(FAD pyrophosphorylase) (FAD synthetase) [Biosynthesis
of cofactors, prosthetic groups, and carriers,
Riboflavin, FMN, and FAD].
Length = 288
Score = 70.2 bits (172), Expect = 2e-13
Identities = 66/247 (26%), Positives = 105/247 (42%), Gaps = 38/247 (15%)
Query: 109 ALGKFDALHIGHRELAIQASKIGAPYLLSFIGM------AEVFGWEPRAPIVAKCDRKRV 162
A+G FD LH+GH+ L + +I L + +E F W + D+ R
Sbjct: 3 AIGYFDGLHLGHQALLQELKQIAEEKGLPPAVLLFEPHPSEQFNWLTAPALTPLEDKARQ 62
Query: 163 LSSWAPYCGNVAPVEFQIQFSSVRHLSPQQFVEK-LSRELGVRGVVAGENYRFGYKAAGD 221
L + V F +F++ LS QF+++ + + L V+ +V G+++RFG+ GD
Sbjct: 63 LQ--IKGVEQLLVVVFDEEFAN---LSALQFIDQLIVKHLHVKFLVVGDDFRFGHDRQGD 117
Query: 222 ASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQ-VSSTRVRQALAMGDMKYV 280
L C+I + +SS+ +RQAL GD++
Sbjct: 118 FLLLQLFGNTTIF--CVIV--------------KQLFCQDIRISSSAIRQALKNGDLELA 161
Query: 281 SELLGRQHRLILTVNDHDELISTSNKHRVSVPKS--CLLN--LPPKEGFYGNSVLLFGEE 336
++LLGR + + TV +L + P + L N LP K G+Y VLL GE
Sbjct: 162 NKLLGRPYFICGTVIHGQKL-----GRTLGFPTANIKLKNQVLPLKGGYYVVVVLLNGEP 216
Query: 337 NPVKCRI 343
P I
Sbjct: 217 YPGVGNI 223
>gnl|CDD|235946 PRK07143, PRK07143, hypothetical protein; Provisional.
Length = 279
Score = 54.2 bits (131), Expect = 2e-08
Identities = 43/201 (21%), Positives = 90/201 (44%), Gaps = 34/201 (16%)
Query: 110 LGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPY 169
LG F++ H+GH EL +A + ++ + P + + S
Sbjct: 21 LGGFESFHLGHLELFKKAKESNDEIVIVIF----------KNPENLPKNTNKKFSDLNSR 70
Query: 170 CGNVAPVEFQ----IQFSS-VRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASE 224
+A + F+ + F+ +++LS F+EKL+ + V V G+++RFG A+ +A +
Sbjct: 71 LQTLANLGFKNIILLDFNEELQNLSGNDFIEKLT-KNQVSFFVVGKDFRFGKNASWNADD 129
Query: 225 LVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALAMGDMKYVSELL 284
L +EY + I+ + N K +S++ +++ + GD++ ++ LL
Sbjct: 130 L----KEYFPNVHIVEILKI----------NQQK----ISTSLLKEFIEFGDIELLNSLL 171
Query: 285 GRQHRLILTVNDHDELISTSN 305
+ + +T+N + E N
Sbjct: 172 LYNYSISITINKNFEFTYPQN 192
>gnl|CDD|232837 TIGR00125, cyt_tran_rel, cytidyltransferase-like domain. Protein
families that contain at least one copy of this domain
include citrate lyase ligase, pantoate-beta-alanine
ligase, glycerol-3-phosphate cytidyltransferase,
ADP-heptose synthase, phosphocholine
cytidylyltransferase, lipopolysaccharide core
biosynthesis protein KdtB, the bifunctional protein
NadR, and a number whose function is unknown. Many of
these proteins are known to use CTP or ATP and release
pyrophosphate.
Length = 66
Score = 39.6 bits (93), Expect = 1e-04
Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 107 IVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVL 163
++ +G FD H+GH +L +A ++ L+ +G + P+ + +R +L
Sbjct: 2 VIFVGTFDPFHLGHLDLLERAKELF-DELIVGVGSDQFVNPLKGEPVFSLEERLEML 57
>gnl|CDD|185678 cd02039, cytidylyltransferase_like, Cytidylyltransferase-like
domain. Cytidylyltransferase-like domain. Many of these
proteins are known to use CTP or ATP and release
pyrophosphate. Protein families that contain at least
one copy of this domain include citrate lyase ligase,
pantoate-beta-alanine ligase, glycerol-3-phosphate
cytidyltransferase, ADP-heptose synthase, phosphocholine
cytidylyltransferase, lipopolysaccharide core
biosynthesis protein KdtB, the bifunctional protein
NadR, and a number whose function is unknown.
Length = 143
Score = 37.0 bits (86), Expect = 0.004
Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 7/125 (5%)
Query: 108 VALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWA 167
+ +G+F+ H+GH +L +A + ++ I + P +R +L
Sbjct: 3 IIIGRFEPFHLGHLKLIKEALEEALDEVIIIIVSNPPKKKRNKDPFSLH-ERVEMLKEIL 61
Query: 168 PYCGNVAPVEFQIQFSSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAG--DASEL 225
V PV+F V+ L F+ K+ ++G VV GE++ FG A+ D EL
Sbjct: 62 KDRLKVVPVDFP----EVKILLAVVFILKILLKVGPDKVVVGEDFAFGKNASYNKDLKEL 117
Query: 226 VRLCE 230
E
Sbjct: 118 FLDIE 122
>gnl|CDD|223688 COG0615, TagD, Cytidylyltransferase [Cell envelope biogenesis,
outer membrane / Lipid metabolism].
Length = 140
Score = 35.7 bits (83), Expect = 0.012
Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Query: 107 IVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSW 166
+ A G FD LH GH E QA K+G ++ V + R PI+ + R VL S
Sbjct: 4 VWADGTFDILHPGHIEFLRQAKKLGDELIVVVARDETVIKRKKRKPIMPEEQRAEVLES- 62
Query: 167 APYCGNVAP-VEFQIQFSSVRHLSPQQFV 194
Y V + I+F + P V
Sbjct: 63 LRYVDEVILGAPWDIKFEDIEEYKPDIVV 91
>gnl|CDD|223800 COG0728, MviN, Uncharacterized membrane protein, putative virulence
factor [General function prediction only].
Length = 518
Score = 34.2 bits (79), Expect = 0.10
Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 10/91 (10%)
Query: 97 AEGFSPVAGGIVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAK 156
F+P ++ FD LA+ ++I PYLL FI ++ +FG +
Sbjct: 108 GILFAPWLVRLLLAPGFDETDKF---LAVLLTRILFPYLL-FISLSALFG------AILN 157
Query: 157 CDRKRVLSSWAPYCGNVAPVEFQIQFSSVRH 187
+ + ++AP NV+ + +
Sbjct: 158 SRNRFFIPAFAPVLLNVSVIGLALFLGPYFD 188
>gnl|CDD|234834 PRK00777, PRK00777, phosphopantetheine adenylyltransferase;
Provisional.
Length = 153
Score = 32.1 bits (74), Expect = 0.24
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 108 VALG-KFDALHIGHRELAIQASKIG 131
VA+G FD LH GHR L +A ++G
Sbjct: 4 VAVGGTFDPLHDGHRALLRKAFELG 28
>gnl|CDD|217323 pfam03023, MVIN, MviN-like protein. Deletion of the mviN virulence
gene in Salmonella enterica serovar. Typhimurium greatly
reduces virulence in a mouse model of typhoid-like
disease. Open reading frames encoding homologues of MviN
have since been identified in a variety of bacteria,
including pathogens and non-pathogens and
plant-symbionts. In the nitrogen-fixing symbiont
Rhizobium tropici, mviN is required for motility. The
MviM protein is predicted to be membrane-associated.
Length = 452
Score = 33.0 bits (76), Expect = 0.25
Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 17/82 (20%)
Query: 103 VAGGIVALGKFDALHI------GH----RELAIQASKIGAPYLLSFIGMAEVFGWEPRAP 152
V + LG A + G L + +I PYLL + ++ VFG
Sbjct: 66 VLLLVTLLGILAAPWVIRLLAPGFDAETFSLTVSLLRITFPYLL-LVSLSAVFG------ 118
Query: 153 IVAKCDRKRVLSSWAPYCGNVA 174
V +K +++P N+
Sbjct: 119 AVLNARKKFFAPAFSPVLLNIG 140
>gnl|CDD|223950 COG1019, COG1019, Predicted nucleotidyltransferase [General
function prediction only].
Length = 158
Score = 30.3 bits (69), Expect = 0.96
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 107 IVALG-KFDALHIGHRELAIQASKIG 131
VA+G FD LH GH++L A +IG
Sbjct: 7 KVAVGGTFDRLHDGHKKLLEVAFEIG 32
>gnl|CDD|216517 pfam01467, CTP_transf_2, Cytidylyltransferase. This family
includes: Cholinephosphate cytidylyltransferase.
Glycerol-3-phosphate cytidylyltransferase.
Length = 148
Score = 29.7 bits (67), Expect = 1.5
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 111 GKFDALHIGHRELAIQASKIGAPYLLSFIGMA 142
G FD +H+GH L QA ++ L +G+
Sbjct: 4 GTFDPIHLGHLRLLEQAKELFD--LDKIVGVP 33
>gnl|CDD|129003 smart00764, Citrate_ly_lig, Citrate lyase ligase C-terminal domain.
Proteins of this family contain the C-terminal domain
of citrate lyase ligase EC:6.2.1.22.
Length = 182
Score = 29.5 bits (67), Expect = 2.1
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 237 CIINSVMDKHQDSRDIDCND---SKERGQ-VSSTRVRQALAMGDMKYVSELL 284
I N M + S I+ + K GQ +S++ VR+ L G+++ +++L+
Sbjct: 123 AIYNQTMKQTLLSPAIEVVEIERKKANGQPISASTVRKLLKEGNLEELAKLV 174
>gnl|CDD|173915 cd02164, PPAT_CoAS, phosphopantetheine adenylyltransferase domain
of eukaryotic and archaeal bifunctional enzymes. The
PPAT domain of the bifunctional enzyme with PPAT and
DPCK functions. The final two steps of the CoA
biosynthesis pathway are catalyzed by phosphopantetheine
adenylyltransferase (PPAT) and dephospho-CoA (dPCoA)
kinase (DPCK). The PPAT reaction involves the reversible
adenylation of 4'-phosphopantetheine to form 3'-dPCoA
and PPi, and DPCK catalyses phosphorylation of the
3'-hydroxy group of the ribose moiety of dPCoA. In
eukaryotes the two enzymes are part of a large
multienzyme complex . Studies in Corynebacterium
ammoniagenes suggested that separate enzymes were
present, and this was confirmed through identification
of the bacterial PPAT/CoAD.
Length = 143
Score = 28.8 bits (65), Expect = 2.5
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 107 IVAL-GKFDALHIGHRELAIQASKIG 131
VA+ G FD LH GH+ L A +
Sbjct: 1 KVAVGGTFDRLHDGHKILLSVAFLLA 26
>gnl|CDD|173922 cd02171, G3P_Cytidylyltransferase, glycerol-3-phosphate
cytidylyltransferase. Glycerol-3-phosphate
cytidylyltransferase,(CDP-glycerol pyrophosphorylase).
Glycerol-3-phosphate cytidyltransferase acts in pathways
of teichoic acid biosynthesis. Teichoic acids are
substituted polymers, linked by phosphodiester bonds, of
glycerol, ribitol, etc. An example is poly(glycerol
phosphate), the major teichoic acid of the Bacillus
subtilis cell wall. Most, but not all, species encoding
proteins in this family are Gram-positive bacteria. A
closely related protein assigned a different function
experimentally is a human ethanolamine-phosphate
cytidylyltransferase.
Length = 129
Score = 28.2 bits (63), Expect = 3.2
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 10/58 (17%)
Query: 107 IVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAE---------VFGWEPRAPIVA 155
++ G FD LHIGH L +A +G L+ + E V +E RA I+
Sbjct: 4 VITYGTFDLLHIGHLNLLERAKALGD-KLIVAVSTDEFNAGKGKKAVIPYEQRAEILE 60
>gnl|CDD|173924 cd02173, ECT, CTP:phosphoethanolamine cytidylyltransferase (ECT).
CTP:phosphoethanolamine cytidylyltransferase (ECT)
catalyzes the conversion of phosphoethanolamine to
CDP-ethanolamine as part of the CDP-ethanolamine
biosynthesis pathway. ECT expression in hepatocytes is
localized predominantly to areas of the cytoplasm that
are rich in rough endoplasmic reticulum. Several ECTs,
including yeast and human ECT, have large repetitive
sequences located within their N- and C-termini.
Length = 152
Score = 28.8 bits (65), Expect = 3.2
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 111 GKFDALHIGHRELAIQASKIGAPYLL 136
G FD HIGH E +A ++G YL+
Sbjct: 9 GAFDLFHIGHIEFLEKARELG-DYLI 33
>gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter. [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 429
Score = 29.3 bits (66), Expect = 3.7
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 96 PAEGFSPVAGGIVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGW 147
PA S V G+ AL F AL + ELA G+PY ++ M E+ +
Sbjct: 36 PAVILSFVLAGLTAL--FIAL--VYAELAAMLPVAGSPYTYAYEAMGELTAF 83
>gnl|CDD|235118 PRK03348, PRK03348, DNA polymerase IV; Provisional.
Length = 454
Score = 29.1 bits (66), Expect = 3.8
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 17/63 (26%)
Query: 184 SVRHLSPQQF---VEKLSRE-----------LGVRGVVAGENY---RFGYKAAGDASELV 226
V HL F VE+L+R LG RGVVAG +Y FG ++A +
Sbjct: 6 WVLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARVFGARSAMPMHQAR 65
Query: 227 RLC 229
RL
Sbjct: 66 RLV 68
>gnl|CDD|104071 PRK09629, PRK09629, bifunctional thiosulfate
sulfurtransferase/phosphatidylserine decarboxylase;
Provisional.
Length = 610
Score = 29.3 bits (65), Expect = 4.0
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 14/103 (13%)
Query: 101 SPVAGGIVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRK 160
PVAGG V L D RE YL S +G A++ W+ RAP + +
Sbjct: 132 PPVAGGPVTLTLHDE-PTATRE-----------YLQSRLGAADLAIWDARAP--TEYSGE 177
Query: 161 RVLSSWAPYCGNVAPVEFQIQFSSVRHLSPQQFVEKLSRELGV 203
+V+++ + E+ R+L +Q + ++ R+LG+
Sbjct: 178 KVVAAKGGHIPGAVNFEWTAGMDKARNLRIRQDMPEILRDLGI 220
>gnl|CDD|240528 cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug
and toxic compound extrusion (MATE)-like proteins.
Escherichia coli MurJ (MviN) has been identified as
essential for murein biosynthesis. It has been suggested
that MurJ functions as the peptidoglycan lipid II
flippase which is involved in translocation of
lipid-anchored peptidoglycan precursors across the
cytoplasmic membrane, though results obtained in
Bacillus subtilis seem to indicate that its MurJ
homologs are not essential for growth. Some MviN family
members (e.g. in Mycobacterium tuberculosis) possess an
extended C-terminal region that contains an
intracellular pseudo-kinase domain and an extracellular
domain resembling carbohydrate-binding proteins.
Proteins from the MATE family are involved in exporting
metabolites across the cell membrane and are often
responsible for multidrug resistance (MDR).
Length = 420
Score = 28.6 bits (65), Expect = 5.7
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 97 AEGFSPVAGGIVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFG 146
F+P+ ++A G F ELA+ ++I PYLL FI ++ + G
Sbjct: 92 GILFAPLLVKLLAPG-FSG---DKFELAVALTRIMFPYLL-FISLSALLG 136
>gnl|CDD|227808 COG5521, COG5521, Predicted integral membrane protein [Function
unknown].
Length = 275
Score = 28.3 bits (63), Expect = 6.8
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 270 QALAMGDMKYVSELLGRQHRLILTVNDHDELISTSNKH--RVSVPK 313
Q + + DMK+ E LG + + +I+ + RVS K
Sbjct: 101 QNVMVVDMKHEYETLGENFENQIIFQPDELVITDQSGTGFRVSYRK 146
>gnl|CDD|237016 PRK11903, PRK11903, aldehyde dehydrogenase; Provisional.
Length = 521
Score = 28.5 bits (64), Expect = 7.4
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 104 AGGIVALGKFDALHIGHRELAIQASK 129
AGG LG AL HR A+QAS
Sbjct: 483 AGGGEELGGLRALAFYHRRSAVQASP 508
>gnl|CDD|201250 pfam00476, DNA_pol_A, DNA polymerase family A.
Length = 383
Score = 28.1 bits (63), Expect = 9.1
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 9/43 (20%)
Query: 272 LAMGDMKYVSELLGRQHRLILTVNDHDELISTSNKHRVSVPKS 314
LAM + G R+ L V HDE+ VPK
Sbjct: 314 LAMIKLDEALVEKGLDARMCLQV--HDEI-------VFEVPKE 347
>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine
Kinase, Tie2. Protein Tyrosine Kinase (PTK) family;
Tie2; catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tie2 is a receptor tyr
kinase (RTK) containing an extracellular region, a
transmembrane segment, and an intracellular catalytic
domain. The extracellular region contains an
immunoglobulin (Ig)-like domain, three epidermal growth
factor (EGF)-like domains, a second Ig-like domain, and
three fibronectin type III repeats. Tie2 is expressed
mainly in endothelial cells and hematopoietic stem
cells. It is also found in a subset of tumor-associated
monocytes and eosinophils. The angiopoietins (Ang-1 to
Ang-4) serve as ligands for Tie2. The binding of Ang-1
to Tie2 leads to receptor autophosphorylation and
activation, promoting cell migration and survival. In
contrast, Ang-2 binding to Tie2 does not result in the
same response, suggesting that Ang-2 may function as an
antagonist. Tie2 signaling plays key regulatory roles in
vascular integrity and quiescence, and in inflammation.
Length = 303
Score = 27.7 bits (61), Expect = 9.7
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 13/96 (13%)
Query: 117 HIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPV 176
H G+ LAI+ + G LL F+ + V +P I + +VA
Sbjct: 79 HRGYLYLAIEYAPHGN--LLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVA-- 134
Query: 177 EFQIQFSSVRHLSPQQFVEKLSRELGVRGVVAGENY 212
+ +LS +QF+ R+L R ++ GENY
Sbjct: 135 ------RGMDYLSQKQFIH---RDLAARNILVGENY 161
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.414
Gapped
Lambda K H
0.267 0.0763 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,188,763
Number of extensions: 1828784
Number of successful extensions: 1649
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1640
Number of HSP's successfully gapped: 33
Length of query: 380
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 281
Effective length of database: 6,546,556
Effective search space: 1839582236
Effective search space used: 1839582236
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.8 bits)