RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 016934
(380 letters)
>d1mrza2 c.26.1.3 (A:2-158) FMN adenylyltransferase domain of
bifunctional FAD synthetase {Thermotoga maritima [TaxId:
2336]}
Length = 157
Score = 70.3 bits (171), Expect = 3e-15
Identities = 37/180 (20%), Positives = 68/180 (37%), Gaps = 23/180 (12%)
Query: 107 IVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSW 166
+V++G FD +HIGH+++ +I + + E P
Sbjct: 1 VVSIGVFDGVHIGHQKVLRTMKEIAFFRKDDSLIYTISYPPEYFLPDFPGLLMTVESRVE 60
Query: 167 APYCGNVAPVEFQIQFSSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELV 226
V + + + FVE+ V VV G ++RFG A+G+AS L
Sbjct: 61 MLSRYARTVVLDFFRIKDLTP---EGFVERYLSG--VSAVVVGRDFRFGKNASGNASFLR 115
Query: 227 RLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALAMGDMKYVSELLGR 286
+ ++ I V+ + + +VSS+ +R + G ++ + LGR
Sbjct: 116 KKG----VEVYEIEDVVVQGK--------------RVSSSLIRNLVQEGRVEEIPAYLGR 157
>d1lw7a1 c.26.1.3 (A:57-219) Transcriptional regulator NadR,
NMN-adenylyltransferase domain {Haemophilus influenzae
[TaxId: 727]}
Length = 163
Score = 47.5 bits (112), Expect = 3e-07
Identities = 24/171 (14%), Positives = 48/171 (28%), Gaps = 26/171 (15%)
Query: 108 VALGKFDALHIGHRELAIQASKIGAPYLLSFIG----MAEVFGWEPRAPIVAKCDRKRVL 163
V GKF +H GH + +A + ++F + DR R +
Sbjct: 6 VIFGKFYPVHTGHINMIYEAFSKVDELHVIVCSDTVRDLKLFYDSKMKRMPTVQDRLRWM 65
Query: 164 SSWAPYCGNVAPVEFQIQFSSVRHLSPQQFVE-KLSRELGVRGVVAGENYRFGYKAAGDA 222
Y N + ++ P + + + + F + A
Sbjct: 66 QQIFKYQKNQIFIHHLVEDGIP--SYPNGWQSWSEAVKTLFHEKHFEPSIVFSSEPQDKA 123
Query: 223 SELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALA 273
+ G++ ++ D D VS+T++R
Sbjct: 124 P----YEKYLGLEVSLV-----------DPDRTFFN----VSATKIRTTPF 155
>d1ej2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN)
adenylyltransferase {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 167
Score = 34.8 bits (79), Expect = 0.007
Identities = 23/169 (13%), Positives = 43/169 (25%), Gaps = 32/169 (18%)
Query: 108 VALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWA 167
+ +G+ H GH ++ + L+ IG A++ +
Sbjct: 4 LLVGRMQPFHRGHLQVIKSILEE-VDELIICIGSAQLSHSIRDPFTAGERVM-------- 54
Query: 168 PYCGNVAPVEFQIQFSSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVR 227
A E I S + Q ++ + + Y + R
Sbjct: 55 --MLTKALSENGIPASRYYIIPVQDIECNALWVGHIKMLTP--PFDRVY---SGNPLVQR 107
Query: 228 LCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALAMGD 276
L E G + R + S T VR+ +
Sbjct: 108 LFSEDGYEVTAP----------------PLFYRDRYSGTEVRRRMLDDG 140
>d1coza_ c.26.1.2 (A:) CTP:glycerol-3-phosphate cytidylyltransferase
{Bacillus subtilis [TaxId: 1423]}
Length = 126
Score = 34.1 bits (77), Expect = 0.008
Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 14/122 (11%)
Query: 107 IVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSW 166
++ G FD LH GH +L +A ++G YL+ I E + + + RK +L +
Sbjct: 4 VITYGTFDLLHWGHIKLLERAKQLG-DYLVVAISTDEFNLQKQKKAYHSYEHRKLILETI 62
Query: 167 APYCGNVAPVEFQIQFSSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELV 226
V + ++ + + V G+++ + D E+V
Sbjct: 63 RYVD-------------EVIPEKNWEQKKQDIIDHNIDVFVMGDDWEGKFDFLKDQCEVV 109
Query: 227 RL 228
L
Sbjct: 110 YL 111
>d1kama_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN)
adenylyltransferase {Bacillus subtilis [TaxId: 1423]}
Length = 189
Score = 33.9 bits (76), Expect = 0.017
Identities = 16/167 (9%), Positives = 36/167 (21%), Gaps = 11/167 (6%)
Query: 111 GKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYC 170
G FD H GH +A + + F+ + + + + +
Sbjct: 9 GTFDPPHNGHLLMANEVLYQAGLDEIWFMPNQIPPHKQNEDYTDSFHRVEMLKLAIQSNP 68
Query: 171 GNVAPVEFQIQFSSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCE 230
+ + ++ + F A
Sbjct: 69 SFKLELVEMEREGPSYTFDTVSL---------LKQRYPNDQLFFIIGADMIEYLPKWYKL 119
Query: 231 EYGMDACIINSVMDKHQDSRDIDCND--SKERGQVSSTRVRQALAMG 275
+ ++ V +VSST +R+
Sbjct: 120 DELLNLIQFIGVKRPGFHVETPYPLLFADVPEFEVSSTMIRERFKSK 166
>d1jhda2 c.26.1.5 (A:174-396) ATP sulfurylase catalytic domain
{Sulfur-oxidizing endosymbiont of Riftia pachyptila
[TaxId: 35843]}
Length = 223
Score = 32.9 bits (74), Expect = 0.045
Identities = 25/177 (14%), Positives = 51/177 (28%), Gaps = 8/177 (4%)
Query: 107 IVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSW 166
+VA + +H H EL A + + + V + + +
Sbjct: 22 VVAFQTRNPMHRAHEELCRMAMESLDADGVVVHMLLGKLKKGDIPAPVRDAAIRTMAEVY 81
Query: 167 APYCGNV-APVEFQIQFSSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASEL 225
P + F + ++ R + + Y A +
Sbjct: 82 FPPNTVMVTGYGFDMLYAGPREAVLHAYFRQNMGATHFIIGRDHAGVGDYYGAFDAQTIF 141
Query: 226 VRLCEEYGM-------DACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALAMG 275
E M D + ++K RD+ + ++ +S T+VR+ L G
Sbjct: 142 DDEVPEGAMEIEIFRADHTAYSKKLNKIVMMRDVPDHTKEDFVLLSGTKVREMLGQG 198
>d1f9aa_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN)
adenylyltransferase {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 164
Score = 32.1 bits (72), Expect = 0.059
Identities = 16/169 (9%), Positives = 43/169 (25%), Gaps = 35/169 (20%)
Query: 108 VALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWA 167
+G+F H GH E+ + ++ I+ ++ +
Sbjct: 4 FIIGRFQPFHKGHLEVIKKIAEEV------------------DEIIIGIGSAQKSHTLEN 45
Query: 168 PYCGNVAPVEFQIQFSSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVR 227
P+ + ++ + V F
Sbjct: 46 PFTAGERILMITQSLKDYDLTYYPIPIKDIEFNSIWVSYVESLTPPFDI----------- 94
Query: 228 LCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALAMGD 276
Y + + ++ + + + R + S T +R+ + G+
Sbjct: 95 ---VYSGNPLVRVLFEERGYEVKRPE---MFNRKEYSGTEIRRRMLNGE 137
>d1k4ma_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN)
adenylyltransferase {Escherichia coli [TaxId: 562]}
Length = 213
Score = 29.7 bits (65), Expect = 0.44
Identities = 19/192 (9%), Positives = 46/192 (23%), Gaps = 21/192 (10%)
Query: 111 GKFDALHIGHRELAIQASKI------------------GAPYLLSFIGMAEVFGWEPRAP 152
G FD +H GH + + + +
Sbjct: 10 GTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPPHRPQPEANSVQRKHMLELAIADKPL 69
Query: 153 IVAKCDRKRVLSSWAPYCGNVAPVEFQIQFSSVRHLSPQQFVEKLSRELGVRGVVAGENY 212
+ + + Q + + Q + ++ +
Sbjct: 70 FTLDERELKRNAPSYTAQTLKEWRQEQGPDVPLAFIIGQDSLLTFPTWYEYETILDNAHL 129
Query: 213 RFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQAL 272
+ +++ D N Q + I ++ +S+T +R+ L
Sbjct: 130 IVCRRPGYPLEMAQPQYQQWLEDHLTHNPEDLHLQPAGKIYLAETP-WFNISATIIRERL 188
Query: 273 AMGDMKYVSELL 284
G + +LL
Sbjct: 189 QNG--ESCEDLL 198
>d1vlha_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase
{Thermotoga maritima [TaxId: 2336]}
Length = 157
Score = 28.4 bits (62), Expect = 0.81
Identities = 21/165 (12%), Positives = 47/165 (28%), Gaps = 34/165 (20%)
Query: 111 GKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYC 170
G FD + +GH ++ +A I D VL + P
Sbjct: 7 GSFDPITLGHVDIIKRALSI--------------------------FDELVVLVTENPRK 40
Query: 171 GNVAPVEFQIQFSSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCE 230
+ +E + + + L V + +
Sbjct: 41 KCMFTLEERKKLIEEVLSDLDGVKVDVHHGLLV------DYLKKHGIKVLVRGLRAVTDY 94
Query: 231 EYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALAMG 275
EY + + N + ++ + ++ + +SS+ V++ G
Sbjct: 95 EYELQMALANKKLYSDLETVFLIASE--KFSFISSSLVKEVALYG 137
>d1tfua_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 157
Score = 28.0 bits (61), Expect = 1.2
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 111 GKFDALHIGHRELAIQASKI 130
G FD + +GH ++ +A+
Sbjct: 8 GSFDPVTLGHVDIFERAAAQ 27
>d1qjca_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase
{Escherichia coli [TaxId: 562]}
Length = 157
Score = 28.0 bits (61), Expect = 1.2
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 111 GKFDALHIGHRELAIQASKI 130
G FD + GH ++ +A+++
Sbjct: 7 GTFDPITNGHIDIVTRATQM 26
>d1od6a_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase
{Thermus thermophilus [TaxId: 274]}
Length = 160
Score = 28.0 bits (61), Expect = 1.3
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 111 GKFDALHIGHRELAIQASKI 130
G FD L GH ++ +AS++
Sbjct: 7 GSFDPLTNGHLDVIQRASRL 26
>d1o6ba_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase
{Bacillus subtilis [TaxId: 1423]}
Length = 163
Score = 28.1 bits (61), Expect = 1.3
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 111 GKFDALHIGHRELAIQASKI 130
G FD + GH ++ + + I
Sbjct: 8 GSFDPVTYGHLDIIKRGAHI 27
>d1nuua_ c.26.1.3 (A:) Cytosolic NMN/NAMN adenylyltransferase {Human
(Homo sapiens), FKSG76 [TaxId: 9606]}
Length = 233
Score = 27.9 bits (61), Expect = 2.0
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 107 IVALGKFDALHIGHRELAIQASKI 130
++A G F+ + H + A
Sbjct: 7 LLACGSFNPITNMHLRMFEVARDH 30
>d1xe7a_ b.82.1.16 (A:) Hypothetical protein YML079W {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 26.9 bits (59), Expect = 3.6
Identities = 4/23 (17%), Positives = 6/23 (26%)
Query: 1 MLGGSSRISHHLRIRECNYHHYH 23
+L S I + H
Sbjct: 77 LLTPDSPIGKFHKNINRIIHILQ 99
>d1kr2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN)
adenylyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Length = 271
Score = 26.7 bits (58), Expect = 4.2
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 107 IVALGKFDALHIGHRELAIQASK 129
++A G F+ + H L A
Sbjct: 7 LLACGSFNPITNMHLRLFELAKD 29
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.414
Gapped
Lambda K H
0.267 0.0558 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,395,928
Number of extensions: 63552
Number of successful extensions: 150
Number of sequences better than 10.0: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 16
Length of query: 380
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 293
Effective length of database: 1,213,086
Effective search space: 355434198
Effective search space used: 355434198
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.0 bits)