Query 016935
Match_columns 380
No_of_seqs 172 out of 409
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 04:08:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016935.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016935hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04755 PAP_fibrillin: PAP_fi 100.0 1.3E-43 2.9E-48 322.7 22.5 196 155-371 1-198 (198)
2 PF14869 DUF4488: Domain of un 51.5 1.4E+02 0.0031 26.9 9.1 75 204-289 2-77 (133)
3 PF08212 Lipocalin_2: Lipocali 29.6 3.7E+02 0.0081 23.3 10.2 30 346-375 82-115 (143)
4 COG2088 SpoVG Uncharacterized 28.3 49 0.0011 28.0 2.4 26 346-371 18-47 (95)
5 TIGR02116 toxin_Txe_YoeB toxin 27.9 1.4E+02 0.003 23.6 4.8 32 176-209 17-48 (80)
6 COG3040 Blc Bacterial lipocali 26.2 3.8E+02 0.0082 25.3 8.0 28 347-374 111-142 (174)
7 PF07624 PSD2: Protein of unkn 25.4 1.1E+02 0.0025 24.2 4.0 41 154-194 20-60 (76)
8 PF06251 Caps_synth_GfcC: Caps 17.6 1.3E+02 0.0028 28.5 3.3 66 151-219 52-130 (229)
9 PF05015 Plasmid_killer: Plasm 17.5 4.8E+02 0.01 21.3 6.2 31 162-192 10-40 (93)
10 PF05973 Gp49: Phage derived p 16.3 4E+02 0.0087 21.2 5.5 42 175-217 7-50 (91)
No 1
>PF04755 PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843 This family identifies a conserved domain found in a number of plastid lipid-associated proteins (PAPs) that are thought to form together with other plastoglobulins a coat on the surface of the lipoprotein particle. The coat may contain receptors for attachment to the thylakoid membrane as well as regulatory proteins that may function in the transfer of lipids to and from the thylakoid membranes.). This entry also represents a number of putative fibrillin proteins.; GO: 0005198 structural molecule activity, 0009507 chloroplast
Probab=100.00 E-value=1.3e-43 Score=322.71 Aligned_cols=196 Identities=45% Similarity=0.794 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHhcCCCCccCChhhHHHHHHHHHHHHHhCCCCCCCCcccCCcceEEEEEeccccchhhhhcCCCCcceec
Q 016935 155 GDLKRCLVDTVYGTELGFRAGSDVRAEVLELVNQLEALNPTPNPVNAAGVLDGNWVLVYTAFSELLPLLAAGAIPLLKVE 234 (380)
Q Consensus 155 ~~lK~~LL~aiagT~RG~~As~e~R~eVeeLI~qLEalNPtp~Pt~sp~lL~G~W~LvYTSs~~~~plLa~GrlPfv~vG 234 (380)
+++|++||+++++++||+.+++++|++|+++|++||++||++.|+++.++|+|+|+|+|||+.++.+.+..++.+++.++
T Consensus 1 ~~~K~~Ll~~~~~~~rG~~~~~~~~~~i~~~v~~LE~~np~~~p~~s~~~L~G~W~Lvytt~~~~~~~l~~~~~~~~~~~ 80 (198)
T PF04755_consen 1 QDLKQELLQAVAGTNRGLRASPEDREEIEELVEELEALNPTPDPADSLPLLDGRWELVYTTSPEIRSLLQRGRLPGVRVG 80 (198)
T ss_pred ChHHHHHHHHHhccCCCccCCHHHHHHHHHHHHHHHHhCCCCCCcCCchhcCcEEEEEeecCCCcccccccccccccccc
Confidence 36999999999999999999999999999999999999999999987679999999999999998866666777888999
Q ss_pred ceEEEEeCCCCeEEEEEEecC-CCcceEEEEEEEEEEcCCCeEEEEEeeeeecCCCCCcccCCCCccccccccccCcccc
Q 016935 235 KICQKIDTSSLTIENSTTLSS-PFASFSFSATASFEVRSPSRIQVQFKEGTLQPPDIKSTVDLPGNLNIFGQNINLSPVQ 313 (380)
Q Consensus 235 ~I~Q~ID~~~~~v~N~Vefs~-P~l~~sv~v~Asfev~s~~Rv~V~Fe~~~l~pp~i~~~~~lP~~v~ifGq~I~l~~l~ 313 (380)
++||+||.+++++.|+|+|.. |++.+.+.+.+++++.+++|+.|+|+++.+.++.+ +.
T Consensus 81 ~v~Q~id~~~~~~~N~v~~~~~~~~~~~~~v~a~~~~~~~~rv~v~f~~~~l~~~~~---------------------l~ 139 (198)
T PF04755_consen 81 RVFQTIDADNGRVENVVELSGFPLLEGSVSVRASLEVRSPRRVEVTFERASLKPPSL---------------------LK 139 (198)
T ss_pred ceEEEEECCCceEEEEEEEeccCceEEEEEEEEEEEEccccEEEEEEEeeEEcccce---------------------ee
Confidence 999999999999999999984 77788999999999999999999999999987653 12
Q ss_pred cccchhhhhhhhhhccccCCCCccccCCCCCCceEEEEEEecCCeeEEeCCCc-eEEEE
Q 016935 314 QTLSPLQEAVGSISRAVSGQPPLKVPIPGERTQSWLLITYLDEDFRISRGDGG-LFVLV 371 (380)
Q Consensus 314 ~~l~P~~~~~~~i~r~isg~pPlk~Plpg~~~~GwLdtTYLDedLRIsRGdgG-vFVl~ 371 (380)
+.+.+++.....+.+.+....|+++++++..++|||+||||||||||+||++| +|||.
T Consensus 140 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~l~~tYLDedlRI~Rg~~G~~fVl~ 198 (198)
T PF04755_consen 140 GVLGPLKDALNNVPRGISDELPVPLPLPGGSPKGWLDTTYLDEDLRISRGNKGSLFVLK 198 (198)
T ss_pred ccchhhhhhhhhcccccccccccccccCCCCCceEEEEEEECCCeEEEEcCCCCEEEeC
Confidence 22334444445555555566778888887788999999999999999999999 99984
No 2
>PF14869 DUF4488: Domain of unknown function (DUF4488)
Probab=51.47 E-value=1.4e+02 Score=26.89 Aligned_cols=75 Identities=21% Similarity=0.303 Sum_probs=48.9
Q ss_pred CCcceEEEE-EeccccchhhhhcCCCCcceecceEEEEeCCCCeEEEEEEecCCCcceEEEEEEEEEEcCCCeEEEEEee
Q 016935 204 VLDGNWVLV-YTAFSELLPLLAAGAIPLLKVEKICQKIDTSSLTIENSTTLSSPFASFSFSATASFEVRSPSRIQVQFKE 282 (380)
Q Consensus 204 lL~G~W~Lv-YTSs~~~~plLa~GrlPfv~vG~I~Q~ID~~~~~v~N~Vefs~P~l~~sv~v~Asfev~s~~Rv~V~Fe~ 282 (380)
.|.|-|+|. |-+...-.+ |. ++...++.+|. +.+++.|..-.. -.+..+...+.|+..++....-..++
T Consensus 2 ~l~GVWQ~c~~~~~~~~~~----g~---l~~~~~lKilS-~Dgtf~Ni~~~~--~~~aiIt~~GtY~~~sD~~Y~E~IeK 71 (133)
T PF14869_consen 2 SLQGVWQLCHYVSESPEVP----GK---LKPSNVLKILS-DDGTFVNITMIP--KSGAIITGYGTYEQPSDNIYVESIEK 71 (133)
T ss_pred CceEEEEEEEEeecCcccC----ce---EeecccEEEEc-CCCcEEEEEEeC--CCCcEEEEeEEEEEcCCccceeeecc
Confidence 388999999 555443211 11 33445666665 467999998853 33466888999999998866555555
Q ss_pred eeecCCC
Q 016935 283 GTLQPPD 289 (380)
Q Consensus 283 ~~l~pp~ 289 (380)
.+.+|.
T Consensus 72 -nv~lp~ 77 (133)
T PF14869_consen 72 -NVHLPF 77 (133)
T ss_pred -eecCcc
Confidence 454444
No 3
>PF08212 Lipocalin_2: Lipocalin-like domain; InterPro: IPR000566 Proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids, and lipids share limited regions of sequence homology and a common tertiary structure architecture [, , , , ]. This is an eight stranded antiparallel beta-barrel with a repeated + 1 topology enclosing a internal ligand binding site [, ]. The name 'lipocalin' has been proposed [] for this protein family, but cytosolic fatty-acid binding proteins are also included. The sequences of most members of the family, the core or kernal lipocalins, are characterised by three short conserved stretches of residues, while others, the outlier lipocalin group, share only one or two of these [, ]. Proteins known to belong to this family include alpha-1-microglobulin (protein HC); alpha-1-acid glycoprotein (orosomucoid) []; aphrodisin; apolipoprotein D; beta-lactoglobulin; complement component C8 gamma chain []; crustacyanin []; epididymal-retinoic acid binding protein (E-RABP) []; insectacyanin; odorant-binding protein (OBP); human pregnancy-associated endometrial alpha-2 globulin; probasin (PB), a rat prostatic protein; prostaglandin D synthase (5.3.99.2 from EC) []; purpurin; Von Ebner's gland protein (VEGP) []; and lizard epididymal secretory protein IV (LESP IV) [].; GO: 0005488 binding; PDB: 3EBW_B 1QWD_A 2ACO_A 3MBT_A.
Probab=29.60 E-value=3.7e+02 Score=23.25 Aligned_cols=30 Identities=20% Similarity=0.388 Sum_probs=21.8
Q ss_pred ceEEEEEEecCCe---eEEeCCCc-eEEEEecCC
Q 016935 346 QSWLLITYLDEDF---RISRGDGG-LFVLVKEGS 375 (380)
Q Consensus 346 ~GwLdtTYLDedL---RIsRGdgG-vFVl~R~~s 375 (380)
.+=..|.|+|.|- -|+-.++. +|||.|+..
T Consensus 82 ~~~YwVl~~D~dY~~~iv~~~~~~~~WILsR~p~ 115 (143)
T PF08212_consen 82 KGNYWVLYTDYDYSWAIVGSPDREYLWILSRTPQ 115 (143)
T ss_dssp EEEEEEEEEBTTSSEEEEEECCCCEEEEEESSSS
T ss_pred CcceEEEEEcCCccEEEEecCCCCEEEEEeCCCC
Confidence 5566799999983 33444555 999999865
No 4
>COG2088 SpoVG Uncharacterized protein, involved in the regulation of septum location [Cell envelope biogenesis, outer membrane]
Probab=28.33 E-value=49 Score=28.00 Aligned_cols=26 Identities=31% Similarity=0.758 Sum_probs=18.6
Q ss_pred ceEEEEE----EecCCeeEEeCCCceEEEE
Q 016935 346 QSWLLIT----YLDEDFRISRGDGGLFVLV 371 (380)
Q Consensus 346 ~GwLdtT----YLDedLRIsRGdgGvFVl~ 371 (380)
+.+..+| |+=.+||+.-|++|+||-.
T Consensus 18 kA~vsvT~D~efVvhdirVi~G~~GlfVAM 47 (95)
T COG2088 18 KAYVSVTLDNEFVVHDIRVIEGNNGLFVAM 47 (95)
T ss_pred EEEEEEEecceEEEeccEEEeCCcceEEEc
Confidence 3454444 4445899999999999963
No 5
>TIGR02116 toxin_Txe_YoeB toxin-antitoxin system, toxin component, Txe/YoeB family. The Axe-Txe pair in Enterococcus faecium and the homologous YefM-YoeB pair in Escherichia coli have been shown to act as an antitoxin-toxin pair. This model describes the toxin component. Nearly every example found is next to an identifiable antitoxin, as indicated by matches to TIGR01552 and/or pfam02604.
Probab=27.91 E-value=1.4e+02 Score=23.60 Aligned_cols=32 Identities=16% Similarity=0.345 Sum_probs=18.9
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCCCCcccCCcceE
Q 016935 176 SDVRAEVLELVNQLEALNPTPNPVNAAGVLDGNW 209 (380)
Q Consensus 176 ~e~R~eVeeLI~qLEalNPtp~Pt~sp~lL~G~W 209 (380)
+..+..|.++|++|+ .||.+.... ...|.|.|
T Consensus 17 ~~~~~~i~~~i~~l~-~~P~~~~~~-~~~L~G~~ 48 (80)
T TIGR02116 17 KKLKKKINELIKDVR-RDPFKGKGK-PEPLKGDL 48 (80)
T ss_pred HHHHHHHHHHHHHHH-cCCCCCCCC-cccCCCCC
Confidence 456788999999887 466532122 13455544
No 6
>COG3040 Blc Bacterial lipocalin [Cell envelope biogenesis, outer membrane]
Probab=26.23 E-value=3.8e+02 Score=25.27 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=22.1
Q ss_pred eEEEEEEecCCeeEEe-C--CCc-eEEEEecC
Q 016935 347 SWLLITYLDEDFRISR-G--DGG-LFVLVKEG 374 (380)
Q Consensus 347 GwLdtTYLDedLRIsR-G--dgG-vFVl~R~~ 374 (380)
|-+.++|+|+|-+..= | |+- +|+|.|.-
T Consensus 111 g~Y~Vl~~d~eYs~aiVgsPdr~ylWlLsRtP 142 (174)
T COG3040 111 GDYWVLALDPEYSWAIVGSPDREYLWLLSRTP 142 (174)
T ss_pred ccEEEEEECCCccEEEEeCCCcceEEEEecCC
Confidence 5567999999988765 4 566 99999965
No 7
>PF07624 PSD2: Protein of unknown function (DUF1585); InterPro: IPR011478 This entry represents a conserved region at the C terminus of a family of cytochrome-like proteins found in bacteria such as Rhodopirellula baltica and Solibacter usitatus. These proteins also contain IPR013036 from INTERPRO, IPR013039 from INTERPRO, IPR013042 from INTERPRO and IPR013043 from INTERPRO.
Probab=25.44 E-value=1.1e+02 Score=24.20 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhcCCCCccCChhhHHHHHHHHHHHHHhCC
Q 016935 154 LGDLKRCLVDTVYGTELGFRAGSDVRAEVLELVNQLEALNP 194 (380)
Q Consensus 154 ~~~lK~~LL~aiagT~RG~~As~e~R~eVeeLI~qLEalNP 194 (380)
.++..+++.+.+....-|...+..++..|+++++++++.+-
T Consensus 20 ~~~~~~~~~~kl~~YAlGR~~~~~D~~~i~~i~~~~~~~~y 60 (76)
T PF07624_consen 20 KDQFARCFAEKLLTYALGRPLEFSDRCEIDRIVEAFKANGY 60 (76)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHcCC
Confidence 35555666666655555666668899999999999998763
No 8
>PF06251 Caps_synth_GfcC: Capsule biosynthesis GfcC; InterPro: IPR010425 This entry represents uncharacterised bacterial proteins that contain a central beta-grasp like domain related to the SLBB domain [].; PDB: 3P42_B.
Probab=17.59 E-value=1.3e+02 Score=28.54 Aligned_cols=66 Identities=24% Similarity=0.260 Sum_probs=39.2
Q ss_pred hhhHHHHHHHHHHHHhcCCCCccCChhhHHHHHHHHHHHHHhCCCCC-------------CCCcccCCcceEEEEEeccc
Q 016935 151 DDKLGDLKRCLVDTVYGTELGFRAGSDVRAEVLELVNQLEALNPTPN-------------PVNAAGVLDGNWVLVYTAFS 217 (380)
Q Consensus 151 ~~~~~~lK~~LL~aiagT~RG~~As~e~R~eVeeLI~qLEalNPtp~-------------Pt~sp~lL~G~W~LvYTSs~ 217 (380)
..+.++.|++|+..++.... ....+..+.+..++++|+....+.+ +...+ +|.|.++|.....+
T Consensus 52 ~~~~~~~~~~ll~~L~~l~~--~~~~~~~~~~~~l~~qL~~~~~~gR~~i~lD~d~~r~~~~~n~-~L~ggd~L~vP~rp 128 (229)
T PF06251_consen 52 QAEAEQQKQQLLAQLAQLEQ--SADSDQAAAAQQLIQQLQSLEATGRVVINLDPDWVRLNPEYNP-LLEGGDRLYVPPRP 128 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HS-HHHHHHHHHHHHHHTT--B----S----TTS-EESTTSS--B-ECEEEEE-----
T ss_pred hHHHHHHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHHHhccccceEEEecCHHHhhccccCCC-cCCCCcEEEECCCC
Confidence 45688888888888776433 4456778889999999988875432 12233 78999999998876
Q ss_pred cc
Q 016935 218 EL 219 (380)
Q Consensus 218 ~~ 219 (380)
..
T Consensus 129 ~~ 130 (229)
T PF06251_consen 129 NT 130 (229)
T ss_dssp SE
T ss_pred CE
Confidence 54
No 9
>PF05015 Plasmid_killer: Plasmid maintenance system killer protein; InterPro: IPR007711 Several plasmids with proteic killer gene systems have been reported. All of them encode a stable toxin and an unstable antidote. Upon loss of the plasmid, the less stable inhibitor is inactivated more rapidly than the toxin, allowing the toxin to be activated. The activation of those systems result in cell filamentation and cessation of viable cell production. It has been verified that both the stable killer and the unstable inhibitor of the systems are short polypeptides. This family corresponds to the toxin.
Probab=17.51 E-value=4.8e+02 Score=21.34 Aligned_cols=31 Identities=13% Similarity=0.273 Sum_probs=18.1
Q ss_pred HHHHhcCCCCccCChhhHHHHHHHHHHHHHh
Q 016935 162 VDTVYGTELGFRAGSDVRAEVLELVNQLEAL 192 (380)
Q Consensus 162 L~aiagT~RG~~As~e~R~eVeeLI~qLEal 192 (380)
|+.+..++.-....++-...+...+++|++.
T Consensus 10 l~~l~~~~~~k~~~~~~~~~~~~~L~~L~aa 40 (93)
T PF05015_consen 10 LEKLFEDGKTKKIPADIAKKLRRRLDQLDAA 40 (93)
T ss_pred HHHHHCCCCcCCcCHHHHHHHHHHHHHHHhC
Confidence 4455555544444555566666777777665
No 10
>PF05973 Gp49: Phage derived protein Gp49-like (DUF891); InterPro: IPR009241 This entry consists of several hypothetical viral and bacterial proteins some are annotated as addiction module killer proteins.
Probab=16.32 E-value=4e+02 Score=21.16 Aligned_cols=42 Identities=26% Similarity=0.248 Sum_probs=29.8
Q ss_pred ChhhHHHHHHHHHHHHHhCCCCCCCCcccCC--cceEEEEEeccc
Q 016935 175 GSDVRAEVLELVNQLEALNPTPNPVNAAGVL--DGNWVLVYTAFS 217 (380)
Q Consensus 175 s~e~R~eVeeLI~qLEalNPtp~Pt~sp~lL--~G~W~LvYTSs~ 217 (380)
+...+++|...++.|+..++....... ..| +|-|+|......
T Consensus 7 ~~~~~~~i~~~l~~l~~~G~~l~~~~~-k~l~~~~i~ElR~~~~~ 50 (91)
T PF05973_consen 7 PDKERAKILAQLERLEEHGPSLGEPLF-KHLKGDGIYELRVRGGS 50 (91)
T ss_pred CHHHHHHHHHHHHHHHhcCCccCCCcc-cccCcCCeEEEEEeecC
Confidence 466789999999999988854322222 234 599999987765
Done!