BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016936
(380 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8L716|U2A2B_ARATH Splicing factor U2af large subunit B OS=Arabidopsis thaliana
GN=U2AF65B PE=2 SV=2
Length = 589
Score = 556 bits (1434), Expect = e-158, Method: Compositional matrix adjust.
Identities = 268/379 (70%), Positives = 306/379 (80%), Gaps = 14/379 (3%)
Query: 1 MAQNMLPF-GATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTA 59
M NM P QLGA P++PVQ MTQQATRHARRVYVGGLPP ANEQ+++TFFSQVM+A
Sbjct: 222 MFSNMFPMVPGQQLGALPVLPVQAMTQQATRHARRVYVGGLPPTANEQSVSTFFSQVMSA 281
Query: 60 IGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNP 119
IGGN+AGPGDAVVNVYINHEKKFAFVEMR+VEEASNAMALDGII EGV V+VRRPTDYNP
Sbjct: 282 IGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIILEGVPVKVRRPTDYNP 341
Query: 120 TLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTL 179
+LAA LGP QP+PNLNL AVGL+SG+ GG EGPDR+FVGGLPYYFTE QI+ELLESFG L
Sbjct: 342 SLAATLGPSQPNPNLNLGAVGLSSGSTGGLEGPDRIFVGGLPYYFTEVQIRELLESFGPL 401
Query: 180 HGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTE 239
GF+LVKDR+TGNSKGY FCVYQDP+VTDIACAALNG+KMGDKTLTVRRA + Q K E
Sbjct: 402 RGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAALNGIKMGDKTLTVRRAIQGAIQPKPE 461
Query: 240 QESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYE 299
QE +L AQQ IA+Q++ Q G T K++CLT+ +TAD L DDEEY
Sbjct: 462 QEEVLLYAQQQIALQRLMFQPGG-------------TPTKIVCLTQVVTADDLRDDEEYA 508
Query: 300 EILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFG 359
EI+EDMR+E GK+G LVNVVIPRP+ + TPGVGKVFLEY D G + A++ ++GRKFG
Sbjct: 509 EIMEDMRQEGGKFGNLVNVVIPRPNPDHDPTPGVGKVFLEYADVDGSSKARSGMNGRKFG 568
Query: 360 GNTVNAFYYPEDKYFNKDY 378
GN V A YYPEDKY DY
Sbjct: 569 GNQVVAVYYPEDKYAQGDY 587
>sp|Q9ZR39|U2A2A_NICPL Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia
GN=U2AF65A PE=2 SV=1
Length = 555
Score = 554 bits (1427), Expect = e-157, Method: Compositional matrix adjust.
Identities = 265/377 (70%), Positives = 302/377 (80%), Gaps = 13/377 (3%)
Query: 4 NMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGN 63
NM P ++Q GA P+MPVQ MTQQATRHARRVYVGGLPP ANEQ++ATFFS VM AIGGN
Sbjct: 192 NMFPLASSQFGALPMMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSHVMYAIGGN 251
Query: 64 SAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAA 123
+AGPGDAVVNVYINHEKKFAFVEMR+VEEASNAMALDG+IFEG V+VRRP+DYNP+LAA
Sbjct: 252 TAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGVIFEGGPVKVRRPSDYNPSLAA 311
Query: 124 ALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFD 183
LGP QPSPNLNLAAVG G+ GG EGPDR+FVGGLPYYFTE+QI+ELLESFG L GFD
Sbjct: 312 TLGPSQPSPNLNLAAVGSTPGSSGGLEGPDRIFVGGLPYYFTESQIRELLESFGQLRGFD 371
Query: 184 LVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESI 243
LVKDR+TGNSKGY FCVYQD +VTDIACAALNG+KMGDKTLTVRRA + Q EQES+
Sbjct: 372 LVKDRETGNSKGYAFCVYQDVSVTDIACAALNGIKMGDKTLTVRRANQGTTQPNPEQESV 431
Query: 244 LAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILE 303
L AQQ IA+Q+ LQ + T KVLCLTE +T D L DD++Y++ILE
Sbjct: 432 LLHAQQQIALQRFMLQPGALAT-------------KVLCLTEVVTVDELNDDDDYQDILE 478
Query: 304 DMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTV 363
DMR EC K+G LVNVVIPRP+ NG TPG+GKVFLEY D G + A+ L+GRKFGGN V
Sbjct: 479 DMRTECEKFGALVNVVIPRPNPNGVPTPGLGKVFLEYADVDGSSKARQGLNGRKFGGNQV 538
Query: 364 NAFYYPEDKYFNKDYSA 380
A +YPE+K+ DY A
Sbjct: 539 VAVFYPENKFSEGDYEA 555
>sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia
GN=U2AF65B PE=2 SV=1
Length = 573
Score = 553 bits (1425), Expect = e-157, Method: Compositional matrix adjust.
Identities = 265/378 (70%), Positives = 306/378 (80%), Gaps = 13/378 (3%)
Query: 1 MAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAI 60
M NM P + Q GA P+MP+Q MTQQATRHARRVYVGGLP ANEQ++ATFFS VM+AI
Sbjct: 207 MFPNMFPLASGQFGALPVMPIQAMTQQATRHARRVYVGGLPAHANEQSVATFFSHVMSAI 266
Query: 61 GGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPT 120
GGN+AGPGDAVVNVYIN+EKKFAFVEMR+VEEASNAMALDGIIFEG +VRRP+DYNP+
Sbjct: 267 GGNTAGPGDAVVNVYINYEKKFAFVEMRSVEEASNAMALDGIIFEGAPCKVRRPSDYNPS 326
Query: 121 LAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLH 180
LAA LGP QP+PNLNLAAVGL+ G+ GG EGPDR+FVGGLPYYFTE QI+ELLESFG L
Sbjct: 327 LAATLGPSQPNPNLNLAAVGLSPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLR 386
Query: 181 GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQ 240
GFDLVKDR+TGNSKGY FCVYQD +VTDIACAALNG+KMGDKTLTVRRA + Q K EQ
Sbjct: 387 GFDLVKDRETGNSKGYAFCVYQDVSVTDIACAALNGIKMGDKTLTVRRANQGTTQPKPEQ 446
Query: 241 ESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEE 300
ES+L AQQ IA+Q++ LQ + + T KVL LTE I+AD L DDE+Y++
Sbjct: 447 ESVLLHAQQQIALQRLMLQPATLAT-------------KVLSLTEVISADELNDDEDYQD 493
Query: 301 ILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGG 360
ILEDMR ECGK+G+LVNVVIPRP NG TPGVGKVFLEY D + A+ +L+GRKFGG
Sbjct: 494 ILEDMRTECGKFGSLVNVVIPRPSPNGEPTPGVGKVFLEYADVDSSSKARQSLNGRKFGG 553
Query: 361 NTVNAFYYPEDKYFNKDY 378
N V A +YPE+K++ DY
Sbjct: 554 NQVVAVFYPENKFYEGDY 571
>sp|O23212|U2A2A_ARATH Splicing factor U2af large subunit A OS=Arabidopsis thaliana
GN=U2AF65A PE=2 SV=2
Length = 573
Score = 526 bits (1354), Expect = e-148, Method: Compositional matrix adjust.
Identities = 256/381 (67%), Positives = 294/381 (77%), Gaps = 14/381 (3%)
Query: 1 MAQNMLPFGATQ-LGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTA 59
M NM P Q G +MP+Q MTQQATRHARRVYVGGL P ANEQ++ATFFSQVM A
Sbjct: 206 MFPNMFPLPTGQSFGGLSMMPIQAMTQQATRHARRVYVGGLSPTANEQSVATFFSQVMAA 265
Query: 60 IGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNP 119
+GGN+AGPGDAVVNVYINHEKKFAFVEMR+VEEASNAM+LDGIIFEG V+VRRP+DYNP
Sbjct: 266 VGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNP 325
Query: 120 TLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTL 179
+LAA LGP QPSP+LNLAAVGL GA GG EGPDR+FVGGLPYYFTE+Q++ELLESFG L
Sbjct: 326 SLAATLGPSQPSPHLNLAAVGLTPGASGGLEGPDRIFVGGLPYYFTESQVRELLESFGGL 385
Query: 180 HGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTE 239
GFDLVKDR+TGNSKGY FCVYQD +VTDIACAALNG+KMGDKTLTVRRA + K E
Sbjct: 386 KGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGTMLQKPE 445
Query: 240 QESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYE 299
QE++L AQQ IA Q++ LQ + T V+CLT+ +T D L DDEEY
Sbjct: 446 QENVLLHAQQQIAFQRVMLQPGAVATT-------------VVCLTQVVTEDELRDDEEYG 492
Query: 300 EILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFG 359
+I+EDMR+E GK+G L NVVIPRP NG G+GKVFL+Y D G A+ ++GRKFG
Sbjct: 493 DIMEDMRQEGGKFGALTNVVIPRPSPNGEPVAGLGKVFLKYADTDGSTRARFGMNGRKFG 552
Query: 360 GNTVNAFYYPEDKYFNKDYSA 380
GN V A YYPEDK+ DY A
Sbjct: 553 GNEVVAVYYPEDKFEQGDYGA 573
>sp|Q2QKB4|U2A2B_WHEAT Splicing factor U2af large subunit B OS=Triticum aestivum
GN=U2AF65B PE=2 SV=1
Length = 543
Score = 514 bits (1325), Expect = e-145, Method: Compositional matrix adjust.
Identities = 260/380 (68%), Positives = 297/380 (78%), Gaps = 14/380 (3%)
Query: 1 MAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAI 60
M NMLPF Q+ + P Q MTQQATRHARRVYVGGLPP ANEQ++A +F+QVM AI
Sbjct: 176 MFPNMLPFADGQINPLVMQP-QAMTQQATRHARRVYVGGLPPSANEQSVAIYFNQVMAAI 234
Query: 61 GGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPT 120
GGN+AGPGDAV+NVYINH+KKFAFVEMR+VEEASNAMALDGI+FEG V+VRRPTDYNP+
Sbjct: 235 GGNTAGPGDAVLNVYINHDKKFAFVEMRSVEEASNAMALDGILFEGAPVKVRRPTDYNPS 294
Query: 121 LAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLH 180
LAAALGP QPS NLNLAAVGL G+ GG EGPDR+FVGGLPYYFTE Q++ELLESFG L
Sbjct: 295 LAAALGPSQPSSNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLR 354
Query: 181 GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQ 240
GFDLVKDR+TGNSKGY FCVYQD VTDIACAALNG+KMGDKTLTVRRA S Q + EQ
Sbjct: 355 GFDLVKDRETGNSKGYAFCVYQDLNVTDIACAALNGIKMGDKTLTVRRANQGSAQPRPEQ 414
Query: 241 ESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEE 300
E+IL QAQQ + +QK+ Q + T KV+CLT+ +TAD L DDEEYE+
Sbjct: 415 ENILLQAQQQVQLQKLVYQVGALPT-------------KVVCLTQVVTADELKDDEEYED 461
Query: 301 ILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGG 360
I+EDMR E GKYG LV VVIPRP +G GVGKVFLEY D G AK A+ GRKFGG
Sbjct: 462 IMEDMRLEAGKYGNLVKVVIPRPHPSGEPVSGVGKVFLEYADVDGSTKAKTAMHGRKFGG 521
Query: 361 NTVNAFYYPEDKYFNKDYSA 380
N V A +YPE+K+ ++DY A
Sbjct: 522 NPVVAVFYPENKFADEDYDA 541
>sp|Q2QZL4|U2A2B_ORYSJ Splicing factor U2af large subunit B OS=Oryza sativa subsp.
japonica GN=U2AF65B PE=2 SV=2
Length = 548
Score = 513 bits (1322), Expect = e-145, Method: Compositional matrix adjust.
Identities = 259/380 (68%), Positives = 297/380 (78%), Gaps = 14/380 (3%)
Query: 1 MAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAI 60
M NMLP G Q + P Q MTQQATRHARRVYVGGLPP ANEQ++A +F+QVM AI
Sbjct: 183 MFPNMLPMGVGQFNPLVIQP-QAMTQQATRHARRVYVGGLPPTANEQSVAIYFNQVMAAI 241
Query: 61 GGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPT 120
GGN+AGPGDAV+NVYINH+KKFAFVEMR+VEEASNAMALDGI+FEG V+VRRPTDYNP+
Sbjct: 242 GGNTAGPGDAVLNVYINHDKKFAFVEMRSVEEASNAMALDGILFEGAPVKVRRPTDYNPS 301
Query: 121 LAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLH 180
LAAALGP QPSPNLNLAAVGL G+ GG EGPDR+FVGGLPYYFTE Q++ELLESFG L
Sbjct: 302 LAAALGPSQPSPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLR 361
Query: 181 GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQ 240
GFDLVKDR+TGNSKGY FCVYQD VTDIACAALNG+KMGDKTLTVRRA + Q + EQ
Sbjct: 362 GFDLVKDRETGNSKGYAFCVYQDLNVTDIACAALNGIKMGDKTLTVRRANQGAAQPRPEQ 421
Query: 241 ESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEE 300
ESIL QAQQ + +QK+ Q + T KV+CLT+ ++AD L DDEEYE+
Sbjct: 422 ESILLQAQQQVQLQKLVYQVGALPT-------------KVVCLTQVVSADELKDDEEYED 468
Query: 301 ILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGG 360
I+EDMR E GKYG L+ VVIPRPD +G GVGKVFLEY D G AK A+ GRKFGG
Sbjct: 469 IMEDMRLEAGKYGNLIKVVIPRPDPSGLPVAGVGKVFLEYADVDGATKAKTAMHGRKFGG 528
Query: 361 NTVNAFYYPEDKYFNKDYSA 380
N V A +YPE+K+ + +Y A
Sbjct: 529 NPVVAVFYPENKFSSAEYDA 548
>sp|Q2R0Q1|U2A2A_ORYSJ Splicing factor U2af large subunit A OS=Oryza sativa subsp.
japonica GN=U2AF65A PE=2 SV=2
Length = 574
Score = 503 bits (1296), Expect = e-142, Method: Compositional matrix adjust.
Identities = 247/377 (65%), Positives = 285/377 (75%), Gaps = 14/377 (3%)
Query: 5 MLP--FGATQLGAFPL-MPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIG 61
MLP F TQ PL + Q MTQQATRHARRVYVGGLPP ANE +A +F+QVM A+G
Sbjct: 207 MLPNMFNLTQTPFTPLVIQPQAMTQQATRHARRVYVGGLPPTANEHTVAVYFNQVMAAVG 266
Query: 62 GNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTL 121
GN+AGPGDAV+NVYINH+KKFAFVEMR+VEEASNAMALDGI+FEG V+VRRPTDYNP+L
Sbjct: 267 GNTAGPGDAVLNVYINHDKKFAFVEMRSVEEASNAMALDGIMFEGAPVKVRRPTDYNPSL 326
Query: 122 AAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHG 181
AAALGP QP+PNLNLAAVGL G+ GG EGPDR+FVGGLPYYFTE Q++ELLESFG L G
Sbjct: 327 AAALGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRG 386
Query: 182 FDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQE 241
FDLVKDR+TGNSKGY FCVYQD VTDIACAALNG+KMGDKTLTVRRA + Q + EQE
Sbjct: 387 FDLVKDRETGNSKGYAFCVYQDLNVTDIACAALNGIKMGDKTLTVRRANQGASQPRPEQE 446
Query: 242 SILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEI 301
S+L QQ +QK+ Q G G KV+CLT+ ++ D L DDEEYE+I
Sbjct: 447 SMLLHVQQQAQMQKLMFQVGG-----------GALPTKVVCLTQVVSPDELRDDEEYEDI 495
Query: 302 LEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGN 361
++DMREE +YG LV VVIPRPD +G GVG+VFLE+ D AKN + GRKF N
Sbjct: 496 VQDMREEGCRYGNLVKVVIPRPDPSGAPVAGVGRVFLEFADVESSTKAKNGMHGRKFANN 555
Query: 362 TVNAFYYPEDKYFNKDY 378
V A +YPEDK+ Y
Sbjct: 556 QVVAVFYPEDKFAEGQY 572
>sp|Q2QKB3|U2A2A_WHEAT Splicing factor U2af large subunit A OS=Triticum aestivum
GN=U2AF65A PE=2 SV=1
Length = 591
Score = 403 bits (1035), Expect = e-111, Method: Compositional matrix adjust.
Identities = 208/329 (63%), Positives = 245/329 (74%), Gaps = 25/329 (7%)
Query: 1 MAQNMLP--FGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMT 58
M NMLP LG PL MTQQATRHARRVYVGGLPP+ANEQ +A FF+QVM
Sbjct: 243 MFPNMLPNLVNVPALGQ-PL----AMTQQATRHARRVYVGGLPPIANEQTVAVFFNQVMA 297
Query: 59 AIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYN 118
AIGGN+ G AVVNVYINH+KKFAFVEMR+VEEASNAMALDGI+FEG V+VRRPTDYN
Sbjct: 298 AIGGNTFALGHAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIMFEGAPVKVRRPTDYN 357
Query: 119 PTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGT 178
P+ AAALGP QP+PNLNLAAVGL GA GG EGPDR+FVGGLPYYFTE Q++ELLE+FG
Sbjct: 358 PSQAAALGPSQPNPNLNLAAVGLTPGAGGGLEGPDRIFVGGLPYYFTEAQVRELLETFGP 417
Query: 179 LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKT 238
L GFD+VKD++TGNSKGY FC+Y+D VTDIACAALNG+++GD+TLTVRRA + +
Sbjct: 418 LRGFDIVKDKETGNSKGYAFCLYKDGTVTDIACAALNGIQLGDRTLTVRRAN-QGAEPRP 476
Query: 239 EQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETL-AKVLCLTEAITADALADDEE 297
EQE+IL QAQQ ++++ + G TL KV+CLT+ ++AD L DDEE
Sbjct: 477 EQENILLQAQQEAQMKRLVYEV-------------GRTLTTKVVCLTQVVSADDLRDDEE 523
Query: 298 YEEILEDMREECGKY---GTLVNVVIPRP 323
Y +ILEDM E KY T+ I RP
Sbjct: 524 YNDILEDMTLEGHKYVPHSTIAESFIIRP 552
>sp|Q24562|U2AF2_DROME Splicing factor U2AF 50 kDa subunit OS=Drosophila melanogaster
GN=U2af50 PE=2 SV=1
Length = 416
Score = 266 bits (680), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 150/366 (40%), Positives = 212/366 (57%), Gaps = 30/366 (8%)
Query: 17 PLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI 76
P V V+ TR ARR+YVG +P E+ + FF+Q M +G A G V+ I
Sbjct: 77 PQTAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQMHLVGLAQAA-GSPVLACQI 135
Query: 77 NHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPG-QPSPNLN 135
N +K FAF+E R+++E + AMA DGI +G ++++RRP DY P PG +P +
Sbjct: 136 NLDKNFAFLEFRSIDETTQAMAFDGINLKGQSLKIRRPHDYQPM------PGITDTPAIK 189
Query: 136 LAAVGLASGAIGGA--EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNS 193
A V +SG I + P ++F+GGLP Y + Q+KELL SFG L F+LVKD TG S
Sbjct: 190 PAVV--SSGVISTVVPDSPHKIFIGGLPNYLNDDQVKELLLSFGKLRAFNLVKDAATGLS 247
Query: 194 KGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAI 253
KGY FC Y D ++TD + A LNG+++GDK L V+RA+ + ++ +
Sbjct: 248 KGYAFCEYVDLSITDQSIAGLNGMQLGDKKLIVQRASVGAKNAQNAANT----------T 297
Query: 254 QKMALQTSGM-NTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKY 312
Q + LQ G+ N + G +VLCL +T D L D+EEYE+ILED++EEC KY
Sbjct: 298 QSVMLQVPGLSNVVTSGPP------TEVLCLLNMVTPDELRDEEEYEDILEDIKEECTKY 351
Query: 313 GTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDK 372
G + +V IPRP + G E PG GKVF+E+ + C A+ AL+GRKF V Y+ DK
Sbjct: 352 GVVRSVEIPRPIE-GVEVPGCGKVFVEFNSVLDCQKAQQALTGRKFSDRVVVTSYFDPDK 410
Query: 373 YFNKDY 378
Y +++
Sbjct: 411 YHRREF 416
>sp|P26368|U2AF2_HUMAN Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2 PE=1
SV=4
Length = 475
Score = 252 bits (644), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 152/359 (42%), Positives = 210/359 (58%), Gaps = 20/359 (5%)
Query: 20 PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE 79
PV V+ Q TR ARR+YVG +P E+A+ FF+ M +GG + PG+ V+ V IN +
Sbjct: 136 PVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVLAVQINQD 194
Query: 80 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 139
K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P PG S N ++
Sbjct: 195 KNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SENPSVYVP 247
Query: 140 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 199
G+ S + + ++F+GGLP Y + Q+KELL SFG L F+LVKD TG SKGY FC
Sbjct: 248 GVVSTVV--PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFC 305
Query: 200 VYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQ 259
Y D VTD A A LNG+++GDK L V+RA+ + + + L I + LQ
Sbjct: 306 EYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA------KNATLVSPPSTINQTPVTLQ 359
Query: 260 TSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVV 319
G+ + M G +VLCL + + L DDEEYEEI+ED+R+EC KYG + ++
Sbjct: 360 VPGLMSSQVQM---GGHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIE 416
Query: 320 IPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFNKDY 378
IPRP +G E PG GK+F+E+ C A L+GRKF V Y D Y +D+
Sbjct: 417 IPRP-VDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRRDF 474
>sp|P26369|U2AF2_MOUSE Splicing factor U2AF 65 kDa subunit OS=Mus musculus GN=U2af2 PE=1
SV=3
Length = 475
Score = 252 bits (643), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 152/359 (42%), Positives = 210/359 (58%), Gaps = 20/359 (5%)
Query: 20 PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE 79
PV V+ Q TR ARR+YVG +P E+A+ FF+ M +GG + PG+ V+ V IN +
Sbjct: 136 PVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVLAVQINQD 194
Query: 80 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 139
K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P PG S N ++
Sbjct: 195 KNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SENPSVYVP 247
Query: 140 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 199
G+ S + + ++F+GGLP Y + Q+KELL SFG L F+LVKD TG SKGY FC
Sbjct: 248 GVVSTVV--PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFC 305
Query: 200 VYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQ 259
Y D VTD A A LNG+++GDK L V+RA+ + + + L I + LQ
Sbjct: 306 EYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA------KNATLVSLPSTINQTPVTLQ 359
Query: 260 TSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVV 319
G+ + M G +VLCL + + L DDEEYEEI+ED+R+EC KYG + ++
Sbjct: 360 VPGLMSSQVQM---GGHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIE 416
Query: 320 IPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFNKDY 378
IPRP +G E PG GK+F+E+ C A L+GRKF V Y D Y +D+
Sbjct: 417 IPRP-VDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRRDF 474
>sp|P90727|U2AF2_CAEBR Splicing factor U2AF 65 kDa subunit OS=Caenorhabditis briggsae
GN=uaf-1 PE=3 SV=2
Length = 488
Score = 249 bits (635), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 149/370 (40%), Positives = 206/370 (55%), Gaps = 37/370 (10%)
Query: 14 GAFPLMPVQ----VMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGD 69
GA P VQ V+ T +RR+YVG +P NE+A+ FF+Q M + + PG+
Sbjct: 152 GAVPRGSVQSAVPVVGPSVTCQSRRLYVGNIPFGCNEEAMLDFFNQQM-HLCNLAQAPGN 210
Query: 70 AVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQ 129
++ IN +K FAF+E R+++E + MA DGI F G ++VRRP DY P+ Q
Sbjct: 211 PILLCQINLDKNFAFIEFRSIDETTAGMAFDGINFMGQQLKVRRPRDYQPS--------Q 262
Query: 130 PSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRD 189
+ ++N A + ++S + A +++F+GGLP Y TE Q+KELL SFG L F L D
Sbjct: 263 NTFDMN-ARMPVSSIVVDSA---NKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVD-S 317
Query: 190 TGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQ 249
GNSKGY F Y DP +TD A A LNG+++GDK L V+ A A+ + T
Sbjct: 318 QGNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLACANQTRHNTH---------- 367
Query: 250 HIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREEC 309
L S G +S ++LCL +T D L DE+YEEILED+REEC
Sbjct: 368 --------LPNSASAIAGIDLSQGAGRATEILCLMNMVTEDELRSDEDYEEILEDVREEC 419
Query: 310 GKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYP 369
KYG + ++ IPRP + PGVGKVF+E+ C A+ AL+GRKF TV YY
Sbjct: 420 SKYGIVRSLEIPRP-YDDHPVPGVGKVFVEFATTSDCQRAQAALTGRKFANRTVVTSYYD 478
Query: 370 EDKYFNKDYS 379
DKY N+ ++
Sbjct: 479 VDKYHNRQFN 488
>sp|P90978|U2AF2_CAEEL Splicing factor U2AF 65 kDa subunit OS=Caenorhabditis elegans
GN=uaf-1 PE=2 SV=2
Length = 496
Score = 247 bits (630), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 143/358 (39%), Positives = 203/358 (56%), Gaps = 33/358 (9%)
Query: 21 VQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEK 80
V V+ T +RR+YVG +P NE+A+ FF+Q M + G + PG+ ++ IN +K
Sbjct: 172 VPVVGPSVTCQSRRLYVGNIPFGCNEEAMLDFFNQQM-HLCGLAQAPGNPILLCQINLDK 230
Query: 81 KFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVG 140
FAF+E R+++E + MA DGI F G ++VRRP DY P+ Q + ++N + +
Sbjct: 231 NFAFIEFRSIDETTAGMAFDGINFMGQQLKVRRPRDYQPS--------QNTFDMN-SRMP 281
Query: 141 LASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCV 200
+++ + A +++F+GGLP Y TE Q+KELL SFG L F L D GNSKGY F
Sbjct: 282 VSTIVVDSA---NKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVD-SQGNSKGYAFAE 337
Query: 201 YQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQT 260
Y DP +TD A A LNG+++GDK L V+ A A+ + T L
Sbjct: 338 YLDPTLTDQAIAGLNGMQLGDKQLVVQLACANQQRHNTN------------------LPN 379
Query: 261 SGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVI 320
S G +S ++LCL +T D L D+EYEEILED+R+EC KYG + ++ I
Sbjct: 380 SASAIAGIDLSQGAGRATEILCLMNMVTEDELKADDEYEEILEDVRDECSKYGIVRSLEI 439
Query: 321 PRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFNKDY 378
PRP ++ PGVGKVF+E+ C A+ AL+GRKF TV YY DKY N+ +
Sbjct: 440 PRPYED-HPVPGVGKVFVEFASTSDCQRAQAALTGRKFANRTVVTSYYDVDKYHNRQF 496
>sp|P36629|U2AF2_SCHPO Splicing factor U2AF 59 kDa subunit OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=prp2 PE=1 SV=1
Length = 517
Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 96/374 (25%), Positives = 168/374 (44%), Gaps = 34/374 (9%)
Query: 3 QNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGG 62
+ +L F + G+ + P + A+R ARR+ V G+P E A +F + +
Sbjct: 170 EKLLEFARSAEGSI-IAPPPPLQPGASRQARRLVVTGIPNEFVEDAFVSFIEDLFISTTY 228
Query: 63 NSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEG-VAVRVRRPTDYNPTL 121
+ +V + E+ FA +E+ T E+A+ L + V ++ +R +Y
Sbjct: 229 HKPE-TKHFSSVNVCKEENFAILEVATPEDATFLWGLQSESYSNDVFLKFQRIQNY---- 283
Query: 122 AAALGPGQPSPNLNLA-AVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLH 180
+ P Q +P ++ + A + + D++++ LP E Q+ ELL+ FG L
Sbjct: 284 ---IVP-QITPEVSQKRSDDYAKNDV--LDSKDKIYISNLPLNLGEDQVVELLKPFGDLL 337
Query: 181 GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQ 240
F L+K+ G+SKG+ FC +++P+ ++A + L+G L + A Q+
Sbjct: 338 SFQLIKNIADGSSKGFCFCEFKNPSDAEVAISGLDGKDTYGNKLHAQFACVGLNQA---- 393
Query: 241 ESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETL-AKVLCLTEAITADALADDEEYE 299
M +++GM L +++ +VL L IT D + D +EYE
Sbjct: 394 ---------------MIDKSNGMAILTELAKASSQSIPTRVLQLHNLITGDEIMDVQEYE 438
Query: 300 EILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFG 359
+I E ++ + YG L+++ IPR G GKVF+ Y D A + G KF
Sbjct: 439 DIYESVKTQFSNYGPLIDIKIPRSIGTRNSGLGTGKVFVRYSDIRSAEVAMEEMKGCKFN 498
Query: 360 GNTVNAFYYPEDKY 373
T+ +Y ED Y
Sbjct: 499 DRTIVIAFYGEDCY 512
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
Length = 524
Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 96/398 (24%), Positives = 150/398 (37%), Gaps = 73/398 (18%)
Query: 20 PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE 79
P+ +T + R AR V+ L + + FFS V + +
Sbjct: 141 PIDNLTPEE-RDARTVFCMQLAARIRPRDLEEFFSTV------GKVRDVRMISDRNSRRS 193
Query: 80 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 139
K A+VE V A+ L G GV + V Q S A
Sbjct: 194 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV-----------------QASQAEKNRAA 236
Query: 140 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 199
+A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF
Sbjct: 237 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 296
Query: 200 VYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQS---------------KTEQ 240
+ D A LNG ++ + + V R ASS S T +
Sbjct: 297 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGR 356
Query: 241 ESILAQAQQHIAIQ-----KMALQTSGMNTLGGGMSLFGETLAK---------------- 279
++A+ + +Q + ALQ SG G L +
Sbjct: 357 LQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVADLQTRLSQQTEASALAAAASVQPLA 416
Query: 280 VLCLTEAITADALADDE--EYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVF 337
C + + ++E EI +D+ EEC K+G ++++ + D+N + G V+
Sbjct: 417 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYV---DKNSAQ----GNVY 469
Query: 338 LEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFN 375
++ A NAL GR F G + A Y P Y N
Sbjct: 470 VKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHN 507
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
Length = 530
Score = 81.6 bits (200), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 100/404 (24%), Positives = 155/404 (38%), Gaps = 79/404 (19%)
Query: 20 PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE 79
P+ +T + R AR V+ L + + FFS V + +
Sbjct: 141 PIDNLTPEE-RDARTVFCMQLAARIRPRDLEEFFSTV------GKVRDVRMISDRNSRRS 193
Query: 80 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 139
K A+VE V A+ L G GV + V Q S A
Sbjct: 194 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV-----------------QASQAEKNRAA 236
Query: 140 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 199
+A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF
Sbjct: 237 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 296
Query: 200 VYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQS---------------KTEQ 240
+ D A LNG ++ + + V R ASS S T +
Sbjct: 297 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGR 356
Query: 241 ESILAQAQQHIAIQ-----KMALQTSGMNTLG--GGMSLFGETLAKVLCLTE-------- 285
++A+ + +Q + ALQ SG G S + ++ TE
Sbjct: 357 LQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAA 416
Query: 286 -----AITADALAD------DEEY---EEILEDMREECGKYGTLVNVVIPRPDQNGGETP 331
A L++ +EE EI +D+ EEC K+G ++++ + D+N +
Sbjct: 417 SVQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYV---DKNSAQ-- 471
Query: 332 GVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFN 375
G V+++ A NAL GR F G + A Y P Y N
Sbjct: 472 --GNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHN 513
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2
Length = 530
Score = 81.6 bits (200), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 100/404 (24%), Positives = 155/404 (38%), Gaps = 79/404 (19%)
Query: 20 PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE 79
P+ +T + R AR V+ L + + FFS V + +
Sbjct: 141 PIDNLTPEE-RDARTVFCMQLAARIRPRDLEEFFSTV------GKVRDVRMISDRNSRRS 193
Query: 80 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 139
K A+VE V A+ L G GV + V Q S A
Sbjct: 194 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV-----------------QASQAEKNRAA 236
Query: 140 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 199
+A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF
Sbjct: 237 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 296
Query: 200 VYQDPAVTDIACAALNGLKMGDKTLTV----RRATASSGQS---------------KTEQ 240
+ D A LNG ++ + + V R ASS S T +
Sbjct: 297 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGR 356
Query: 241 ESILAQAQQHIAIQ-----KMALQTSGMNTLG--GGMSLFGETLAKVLCLTE-------- 285
++A+ + +Q + ALQ SG G S + ++ TE
Sbjct: 357 LQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAA 416
Query: 286 -----AITADALAD------DEEY---EEILEDMREECGKYGTLVNVVIPRPDQNGGETP 331
A L++ +EE EI +D+ EEC K+G ++++ + D+N +
Sbjct: 417 SVQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYV---DKNSAQ-- 471
Query: 332 GVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFN 375
G V+++ A NAL GR F G + A Y P Y N
Sbjct: 472 --GNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHN 513
>sp|Q63285|UHMK1_RAT Serine/threonine-protein kinase Kist OS=Rattus norvegicus GN=Uhmk1
PE=1 SV=1
Length = 419
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 59/94 (62%), Gaps = 6/94 (6%)
Query: 280 VLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLE 339
VL L + D L +++EYE+++ED++EEC KYG +V++++P+ E PG G+VF+E
Sbjct: 322 VLRLLNVLDDDYLENEDEYEDVVEDVKEECQKYGPVVSLLVPK------ENPGRGQVFVE 375
Query: 340 YYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKY 373
Y +A A+ L+GR F G V A +YP Y
Sbjct: 376 YANAGDSKAAQKLLTGRMFDGKFVVATFYPLSAY 409
>sp|P97343|UHMK1_MOUSE Serine/threonine-protein kinase Kist OS=Mus musculus GN=Uhmk1 PE=1
SV=3
Length = 419
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 59/94 (62%), Gaps = 6/94 (6%)
Query: 280 VLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLE 339
VL L + D L +++EYE+++ED++EEC KYG +V++++P+ E PG G+VF+E
Sbjct: 322 VLRLLNVLDDDYLENEDEYEDVVEDVKEECQKYGPVVSLLVPK------ENPGRGQVFVE 375
Query: 340 YYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKY 373
Y +A A+ L+GR F G V A +YP Y
Sbjct: 376 YANAGDSKAAQKLLTGRMFDGKFVVATFYPLSAY 409
>sp|Q8BIQ5|CSTF2_MOUSE Cleavage stimulation factor subunit 2 OS=Mus musculus GN=Cstf2 PE=1
SV=2
Length = 580
Score = 72.4 bits (176), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 155 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 214
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 215 NGLKMGDKTLTVRRATASSGQSKTEQESI 243
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRV--DNAASEKNKEELKSL 104
Score = 32.3 bits (72), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 30 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY---INHEKKFAFVE 86
R R V+VG +P A E+ + FS+V GP + VY K + F E
Sbjct: 13 RSLRSVFVGNIPYEATEEQLKDIFSEV---------GPVVSFRLVYDRETGKPKGYGFCE 63
Query: 87 MRTVEEASNAMA-LDGIIFEGVAVRV 111
+ E A +AM L+G F G A+RV
Sbjct: 64 YQDQETALSAMRNLNGREFSGRALRV 89
>sp|Q8HXM1|CSTF2_BOVIN Cleavage stimulation factor subunit 2 OS=Bos taurus GN=CSTF2 PE=2
SV=1
Length = 572
Score = 72.0 bits (175), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 155 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 214
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 215 NGLKMGDKTLTVRRATASSGQSKTEQESI 243
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRV--DNAASEKNKEELKSL 104
Score = 32.3 bits (72), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 30 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY---INHEKKFAFVE 86
R R V+VG +P A E+ + FS+V GP + VY K + F E
Sbjct: 13 RSLRSVFVGNIPYEATEEQLKDIFSEV---------GPVVSFRLVYDRETGKPKGYGFCE 63
Query: 87 MRTVEEASNAMA-LDGIIFEGVAVRV 111
+ E A +AM L+G F G A+RV
Sbjct: 64 YQDQETALSAMRNLNGREFSGRALRV 89
>sp|Q8C7E9|CSTFT_MOUSE Cleavage stimulation factor subunit 2 tau variant OS=Mus musculus
GN=Cstf2t PE=1 SV=2
Length = 632
Score = 72.0 bits (175), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 155 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 214
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 215 NGLKMGDKTLTVRRATASSGQSKTEQESI 243
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRV--DNAASEKNKEELKSL 104
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 30 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRT 89
R R V+VG +P A E+ + FS+V + + V + K + F E +
Sbjct: 13 RSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFR------LVYDRETGKPKGYGFCEYQD 66
Query: 90 VEEASNAMA-LDGIIFEGVAVRVRR-PTDYNPTLAAALGPGQP 130
E A +AM L+G F G A+RV ++ N +LGP P
Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGPAAP 109
>sp|Q5RDA3|CSTF2_PONAB Cleavage stimulation factor subunit 2 OS=Pongo abelii GN=CSTF2 PE=2
SV=1
Length = 577
Score = 72.0 bits (175), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 155 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 214
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 215 NGLKMGDKTLTVRRATASSGQSKTEQESI 243
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRV--DNAASEKNKEELKSL 104
Score = 32.3 bits (72), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 30 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY---INHEKKFAFVE 86
R R V+VG +P A E+ + FS+V GP + VY K + F E
Sbjct: 13 RSLRSVFVGNIPYEATEEQLKDIFSEV---------GPVVSFRLVYDRETGKPKGYGFCE 63
Query: 87 MRTVEEASNAMA-LDGIIFEGVAVRV 111
+ E A +AM L+G F G A+RV
Sbjct: 64 YQDQETALSAMRNLNGREFSGRALRV 89
>sp|P33240|CSTF2_HUMAN Cleavage stimulation factor subunit 2 OS=Homo sapiens GN=CSTF2 PE=1
SV=1
Length = 577
Score = 72.0 bits (175), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 155 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 214
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 215 NGLKMGDKTLTVRRATASSGQSKTEQESI 243
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRV--DNAASEKNKEELKSL 104
Score = 32.3 bits (72), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 30 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY---INHEKKFAFVE 86
R R V+VG +P A E+ + FS+V GP + VY K + F E
Sbjct: 13 RSLRSVFVGNIPYEATEEQLKDIFSEV---------GPVVSFRLVYDRETGKPKGYGFCE 63
Query: 87 MRTVEEASNAMA-LDGIIFEGVAVRV 111
+ E A +AM L+G F G A+RV
Sbjct: 64 YQDQETALSAMRNLNGREFSGRALRV 89
>sp|Q9H0L4|CSTFT_HUMAN Cleavage stimulation factor subunit 2 tau variant OS=Homo sapiens
GN=CSTF2T PE=1 SV=1
Length = 616
Score = 71.6 bits (174), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 155 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 214
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 215 NGLKMGDKTLTVRRATASSGQSKTEQESI 243
NG + + L V A+S ++K E +S+
Sbjct: 78 NGREFSGRALRV--DNAASEKNKEELKSL 104
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 30 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRT 89
R R V+VG +P A E+ + FS+V + + V + K + F E +
Sbjct: 13 RSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFR------LVYDRETGKPKGYGFCEYQD 66
Query: 90 VEEASNAMA-LDGIIFEGVAVRVRR-PTDYNPTLAAALGPGQP 130
E A +AM L+G F G A+RV ++ N +LGP P
Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGPAAP 109
>sp|Q28FX0|ELAV3_XENTR ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl3 PE=2 SV=1
Length = 343
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 76/171 (44%), Gaps = 25/171 (14%)
Query: 123 AALGPGQPSPNLNLAAVGLASGAIGGAE-GPDRVFVGGLPYYFTETQIKELLESFGTLHG 181
A+ GPG +VG+ +G G A+ + V LP T+ + K L S G +
Sbjct: 13 ASNGPG---------SVGILNGTNGAADDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIES 63
Query: 182 FDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQ------ 235
LV+D+ TG S GYGF Y DP D A LNGLK+ KT+ V A SS
Sbjct: 64 CKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANL 123
Query: 236 ---------SKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETL 277
++ E E + +Q + I + + Q +G + G G F + +
Sbjct: 124 YVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGSVSRGVGFIRFDKRI 174
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 86/221 (38%), Gaps = 29/221 (13%)
Query: 35 VYVGGLPPLANEQAIATFFSQ----------VMTAIGGNSAGPGDAVVNVYI-------- 76
+YV LP N++ + FSQ V G S G G + I
Sbjct: 123 LYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGSVSRGVGFIRFDKRIEAEEAIKG 182
Query: 77 -NHEKKFAFVEMRTVEEASN-----AMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQP 130
N +K E TV+ A+N AL +++ A R P ++ T P
Sbjct: 183 LNGQKPLGASEPITVKFANNPSQKTGQALLTHLYQTTARRYTGPL-HHQTQRFRFSPITI 241
Query: 131 SPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 190
NLA V L G +FV L E+ + +L FG + +++D T
Sbjct: 242 DSVTNLAGVSLTGPTTAGW----CIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTT 297
Query: 191 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 231
KG+GF + +A A+LNG ++GD+ L V T+
Sbjct: 298 NKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTS 338
>sp|Q9P6P7|YKCG_SCHPO Uncharacterized RNA-binding protein C644.16 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC644.16 PE=4 SV=1
Length = 422
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 41/77 (53%)
Query: 155 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 214
V+VG +PY E Q+ ++ + G + F LV D ++G KGYGFC Y DPA A L
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 215 NGLKMGDKTLTVRRATA 231
N G + L V TA
Sbjct: 67 NNYDAGTRRLRVDFPTA 83
>sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1
Length = 439
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 83/203 (40%), Gaps = 35/203 (17%)
Query: 30 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFA 83
R AR V+ L + + FFS A+G V +V I K A
Sbjct: 163 RDARTVFCMQLAARIRPRDLEDFFS----AVG--------KVRDVRIISDRNSRRSKGIA 210
Query: 84 FVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLAS 143
+VE ++ A+ L G GV + V+ LAA +A+
Sbjct: 211 YVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA-----------------MAN 253
Query: 144 GAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQD 203
G GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF + D
Sbjct: 254 NLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSD 313
Query: 204 PAVTDIACAALNGLKMGDKTLTV 226
A LNG ++ + + V
Sbjct: 314 SECARRALEQLNGFELAGRPMRV 336
>sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 291
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 94/216 (43%), Gaps = 20/216 (9%)
Query: 21 VQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY---IN 77
V+V Q +++VG LP + A+A F + AG + V +Y
Sbjct: 75 VEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFER---------AGNVEMVEVIYDKLTG 125
Query: 78 HEKKFAFVEMRTVEEASNA-MALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNL 136
+ F FV M T EE A +G +G A+RV ++ G G+ N +
Sbjct: 126 RSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGG-NSSY 184
Query: 137 AAVGLASGAIGGAEG------PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 190
+ + GGA G +RV+VG L + + +KEL G + +V DRD+
Sbjct: 185 GGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDS 244
Query: 191 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 226
G S+G+GF Y + A +LNG+ + +++ V
Sbjct: 245 GRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRV 280
>sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 292
Score = 65.5 bits (158), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 94/216 (43%), Gaps = 20/216 (9%)
Query: 21 VQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN--- 77
V+V Q +++VG LP + A+A F + AG + V +Y
Sbjct: 76 VEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFER---------AGNVEIVEVIYDKLSG 126
Query: 78 HEKKFAFVEMRTVEEASNA-MALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNL 136
+ F FV M T EE A +G +G A+RV ++ G G+ N +
Sbjct: 127 RSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGG-NSSY 185
Query: 137 AAVGLASGAIGGAEG------PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 190
+ + GGA G +RV+VG L + + +KEL G + +V DRD+
Sbjct: 186 GGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDS 245
Query: 191 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 226
G S+G+GF Y + A +LNG+ + +++ V
Sbjct: 246 GRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRV 281
>sp|O43040|CTF1_SCHPO Cleavage and termination factor 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ctf1 PE=1 SV=1
Length = 363
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%)
Query: 155 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 214
VFVG +PY +E Q+ E+ G + F LV D +TG+ KGYGFC + D T +A L
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 215 NGLKMGDKTLTV 226
N ++G + + V
Sbjct: 69 NNSELGPRKIRV 80
>sp|Q9WV25|PUF60_RAT Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus GN=Puf60
PE=2 SV=2
Length = 564
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 96/221 (43%), Gaps = 36/221 (16%)
Query: 17 PLMPVQVMTQQATRHAR---RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV- 72
PL P+Q M Q R RVYVG + E I F+ GP ++
Sbjct: 115 PLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPF---------GPIKSIDM 165
Query: 73 ---NVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRVRRPTDYNPTLAAALGPG 128
+V + H K FAFVE E A A+ ++ ++ G ++V RP++ G
Sbjct: 166 SWDSVTMKH-KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNI----------G 214
Query: 129 QPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDR 188
Q P ++ A A +R++V + ++ IK + E+FG + L +D
Sbjct: 215 QAQPIIDQLA--------EEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDP 266
Query: 189 DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 229
TG KGYGF Y+ + A +++N +G + L V +A
Sbjct: 267 TTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 307
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 68/147 (46%), Gaps = 24/147 (16%)
Query: 236 SKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADD 295
S+ E SI + +H+ +QK L + + V+ L + + DD
Sbjct: 440 SEQEHMSISGSSARHMVMQK----------------LLRKQESTVMVLRNMVDPKDIDDD 483
Query: 296 EEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPG--VGKVFLEYYDAVGCATAKNAL 353
E E + EECGK+G VN VI ++ G E + K+F+E+ A A AL
Sbjct: 484 LEGE-----VTEECGKFGA-VNRVIIYQEKQGEEEDAEIIVKIFVEFSMASETHKAIQAL 537
Query: 354 SGRKFGGNTVNAFYYPEDKYFNKDYSA 380
+GR FGG V A Y ++++ N D SA
Sbjct: 538 NGRWFGGRKVVAEVYDQERFDNSDLSA 564
>sp|Q3UEB3|PUF60_MOUSE Poly(U)-binding-splicing factor PUF60 OS=Mus musculus GN=Puf60 PE=2
SV=2
Length = 564
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 96/221 (43%), Gaps = 36/221 (16%)
Query: 17 PLMPVQVMTQQATRHAR---RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV- 72
PL P+Q M Q R RVYVG + E I F+ GP ++
Sbjct: 115 PLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPF---------GPIKSIDM 165
Query: 73 ---NVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRVRRPTDYNPTLAAALGPG 128
+V + H K FAFVE E A A+ ++ ++ G ++V RP++ G
Sbjct: 166 SWDSVTMKH-KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNI----------G 214
Query: 129 QPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDR 188
Q P ++ A A +R++V + ++ IK + E+FG + L +D
Sbjct: 215 QAQPIIDQLA--------EEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDP 266
Query: 189 DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 229
TG KGYGF Y+ + A +++N +G + L V +A
Sbjct: 267 TTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 307
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 68/147 (46%), Gaps = 24/147 (16%)
Query: 236 SKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADD 295
S+ E SI + +H+ +QK L + + V+ L + + DD
Sbjct: 440 SEQEHMSISGSSARHMVMQK----------------LLRKQESTVMVLRNMVDPKDIDDD 483
Query: 296 EEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPG--VGKVFLEYYDAVGCATAKNAL 353
E E + EECGK+G VN VI ++ G E + K+F+E+ A A AL
Sbjct: 484 LEGE-----VTEECGKFGA-VNRVIIYQEKQGEEEDAEIIVKIFVEFSMASETHKAIQAL 537
Query: 354 SGRKFGGNTVNAFYYPEDKYFNKDYSA 380
+GR FGG V A Y ++++ N D SA
Sbjct: 538 NGRWFGGRKVVAEVYDQERFDNSDLSA 564
>sp|Q5R469|PUF60_PONAB Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii GN=PUF60 PE=2
SV=1
Length = 558
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 96/222 (43%), Gaps = 36/222 (16%)
Query: 17 PLMPVQVMTQQATRHAR---RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV- 72
PL P+Q M Q R RVYVG + E I F+ GP ++
Sbjct: 109 PLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPF---------GPIKSIDM 159
Query: 73 ---NVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRVRRPTDYNPTLAAALGPG 128
+V + H K FAFVE E A A+ ++ ++ G ++V RP++ G
Sbjct: 160 SWDSVTMKH-KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNI----------G 208
Query: 129 QPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDR 188
Q P ++ A A +R++V + ++ IK + E+FG + L +D
Sbjct: 209 QAQPIIDQLA--------EEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDP 260
Query: 189 DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 230
TG KGYGF Y+ + A +++N +G + L V +A
Sbjct: 261 TTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 302
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 67/147 (45%), Gaps = 24/147 (16%)
Query: 236 SKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADD 295
S+ E SI + +H+ +QK L + + V+ L + + DD
Sbjct: 434 SEQEHMSISGSSARHMVMQK----------------LLRKQESTVMVLRNMVDPKDIDDD 477
Query: 296 EEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPG--VGKVFLEYYDAVGCATAKNAL 353
E E + EECGK+G VN VI ++ G E + K+F+E+ A A AL
Sbjct: 478 LEGE-----VTEECGKFGA-VNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQAL 531
Query: 354 SGRKFGGNTVNAFYYPEDKYFNKDYSA 380
+GR F G V A Y ++++ N D SA
Sbjct: 532 NGRWFAGRKVVAEVYDQERFDNSDLSA 558
>sp|Q2HJG2|PUF60_BOVIN Poly(U)-binding-splicing factor PUF60 OS=Bos taurus GN=PUF60 PE=2
SV=1
Length = 530
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 96/222 (43%), Gaps = 36/222 (16%)
Query: 17 PLMPVQVMTQQATRHAR---RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV- 72
PL P+Q M Q R RVYVG + E I F+ GP ++
Sbjct: 81 PLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPF---------GPIKSIDM 131
Query: 73 ---NVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRVRRPTDYNPTLAAALGPG 128
+V + H K FAFVE E A A+ ++ ++ G ++V RP++ G
Sbjct: 132 SWDSVTMKH-KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNI----------G 180
Query: 129 QPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDR 188
Q P ++ A A +R++V + ++ IK + E+FG + L +D
Sbjct: 181 QAQPIIDQLA--------EEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDP 232
Query: 189 DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 230
TG KGYGF Y+ + A +++N +G + L V +A
Sbjct: 233 TTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 274
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 66/147 (44%), Gaps = 24/147 (16%)
Query: 236 SKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADD 295
S+ E SI + +H+ +QK L + + V+ L + + DD
Sbjct: 406 SEQEHMSISGSSARHMVMQK----------------LLRKQESTVMVLRNMVDPKDIDDD 449
Query: 296 EEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPG--VGKVFLEYYDAVGCATAKNAL 353
E E + EECGK+G VN VI ++ G E + K+F+E+ A A L
Sbjct: 450 LEGE-----VTEECGKFGA-VNRVIIYQEKQGEEEDAEIIVKIFVEFSVASETHKAIQDL 503
Query: 354 SGRKFGGNTVNAFYYPEDKYFNKDYSA 380
+GR F G V A Y ++++ N D SA
Sbjct: 504 NGRWFAGRKVVAEVYDQERFDNSDLSA 530
>sp|Q9UHX1|PUF60_HUMAN Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens GN=PUF60 PE=1
SV=1
Length = 559
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 96/221 (43%), Gaps = 36/221 (16%)
Query: 17 PLMPVQVMTQQATRHAR---RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV- 72
PL P+Q M Q R RVYVG + E I F+ GP ++
Sbjct: 110 PLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPF---------GPIKSIDM 160
Query: 73 ---NVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRVRRPTDYNPTLAAALGPG 128
+V + H K FAFVE E A A+ ++ ++ G ++V RP++ G
Sbjct: 161 SWDSVTMKH-KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNI----------G 209
Query: 129 QPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDR 188
Q P ++ A A +R++V + ++ IK + E+FG + L +D
Sbjct: 210 QAQPIIDQLA--------EEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDP 261
Query: 189 DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 229
TG KGYGF Y+ + A +++N +G + L V +A
Sbjct: 262 TTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 302
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 67/147 (45%), Gaps = 24/147 (16%)
Query: 236 SKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADD 295
S+ E SI + +H+ +QK L + + V+ L + + DD
Sbjct: 435 SEQEHMSISGSSARHMVMQK----------------LLRKQESTVMVLRNMVDPKDIDDD 478
Query: 296 EEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPG--VGKVFLEYYDAVGCATAKNAL 353
E E + EECGK+G VN VI ++ G E + K+F+E+ A A AL
Sbjct: 479 LEGE-----VTEECGKFGA-VNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQAL 532
Query: 354 SGRKFGGNTVNAFYYPEDKYFNKDYSA 380
+GR F G V A Y ++++ N D SA
Sbjct: 533 NGRWFAGRKVVAEVYDQERFDNSDLSA 559
>sp|Q91584|ELAV3_XENLA ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1
Length = 348
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 138 AVGLASGAIGGAE-GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGY 196
VG+ +G G A+ + V LP T+ + K L S G + LV+D+ TG S GY
Sbjct: 18 CVGILNGTNGEADDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGY 77
Query: 197 GFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 233
GF Y DP D A LNGLK+ KT+ V A SS
Sbjct: 78 GFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSS 114
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 88/226 (38%), Gaps = 33/226 (14%)
Query: 35 VYVGGLPPLANEQAIATFFSQ---------VMTAIGGNSAGPGDAVVNVYI--------- 76
+YV LP N++ + FSQ ++ + G S G G + I
Sbjct: 122 LYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 181
Query: 77 NHEKKFAFVEMRTVEEASN-----AMALDGIIFEGVAVRVRRPTDYNP------TLAAAL 125
N +K E TV+ A+N AL +++ A R P + ++
Sbjct: 182 NGQKPLGASEPITVKFANNPSQKTGQALLTHLYQTTARRYTGPLHHQTQRFSPLSILPRF 241
Query: 126 GPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLV 185
P NLA V L G +FV L E+ + +L FG + ++
Sbjct: 242 SPITIDSVTNLAGVSLTGPTTAGW----CIFVYNLSPEADESVLWQLFGPFGAVTNVKVI 297
Query: 186 KDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 231
+D T KG+GF + +A A+LNG ++GD+ L V T+
Sbjct: 298 RDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTS 343
Score = 37.7 bits (86), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 88/223 (39%), Gaps = 30/223 (13%)
Query: 155 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 214
++V LP + ++++L +G + ++ D+ TG S+G GF + + A L
Sbjct: 122 LYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 181
Query: 215 NGLKM--GDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLG----- 267
NG K + +TV+ A S ++ + L Q + QT + L
Sbjct: 182 NGQKPLGASEPITVKFANNPSQKTGQALLTHLYQTTARRYTGPLHHQTQRFSPLSILPRF 241
Query: 268 -----------GGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLV 316
G+SL G T A ++ +A DE + + G +G +
Sbjct: 242 SPITIDSVTNLAGVSLTGPTTAGWCIFVYNLSPEA---DESV------LWQLFGPFGAVT 292
Query: 317 NVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFG 359
NV + R D + G G V + YD A A +L+G + G
Sbjct: 293 NVKVIR-DFTTNKCKGFGFVTMTNYDEAAMAIA--SLNGYRLG 332
>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1
SV=1
Length = 233
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 89/197 (45%), Gaps = 34/197 (17%)
Query: 34 RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGP---GDAVVNVYINHEKKFAFVEMRTV 90
+++VG LP + + +A F ++AG + + N + + F FV M TV
Sbjct: 56 KLFVGNLPYDVDSEKLAGIF---------DAAGVVEIAEVIYNRETDRSRGFGFVTMSTV 106
Query: 91 EEASNAMAL-DGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGA 149
EEA A+ L +G +G + V + AA G + +P G
Sbjct: 107 EEAEKAVELLNGYDMDGRQLTVNK--------AAPRGSPERAPR-------------GDF 145
Query: 150 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDI 209
E RV+VG LP+ +++++L G + +V DR+TG S+G+GF + +
Sbjct: 146 EPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVND 205
Query: 210 ACAALNGLKMGDKTLTV 226
A AAL+G + + + V
Sbjct: 206 AIAALDGQTLDGRAVRV 222
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 140 GLASGAIGGAEGPD--RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYG 197
G G G +E P+ ++FVG LPY ++ + ++ G + +++ +R+T S+G+G
Sbjct: 40 GGVEGGQGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFG 99
Query: 198 FCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 229
F + A LNG M + LTV +A
Sbjct: 100 FVTMSTVEEAEKAVELLNGYDMDGRQLTVNKA 131
>sp|Q14576|ELAV3_HUMAN ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3
Length = 367
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 58/125 (46%), Gaps = 15/125 (12%)
Query: 155 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 214
+ V LP T+ + K L S G + LV+D+ TG S GYGF Y DP D A L
Sbjct: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100
Query: 215 NGLKMGDKTLTVRRATASSGQ---------------SKTEQESILAQAQQHIAIQKMALQ 259
NGLK+ KT+ V A SS S+ E E + +Q + I + + Q
Sbjct: 101 NGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQ 160
Query: 260 TSGMN 264
+G++
Sbjct: 161 VTGVS 165
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%)
Query: 155 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 214
+FV L E+ + +L FG + +++D T KG+GF + +A A+L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 215 NGLKMGDKTLTVRRATA 231
NG ++G++ L V T+
Sbjct: 346 NGYRLGERVLQVSFKTS 362
>sp|Q8R0F5|RBMX2_MOUSE RNA-binding motif protein, X-linked 2 OS=Mus musculus GN=Rbmx2 PE=1
SV=1
Length = 326
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 155 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 214
+FVGGLPY TE I + +G + +LV+D+ TG SKG+ F Y+D T +A
Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97
Query: 215 NGLKMGDKTLTV 226
NG+K+ +T+ V
Sbjct: 98 NGIKIKGRTIRV 109
>sp|Q60900|ELAV3_MOUSE ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1
Length = 367
Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 58/125 (46%), Gaps = 15/125 (12%)
Query: 155 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 214
+ V LP T+ + K L S G + LV+D+ TG S GYGF Y DP D A L
Sbjct: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100
Query: 215 NGLKMGDKTLTVRRATASSGQ---------------SKTEQESILAQAQQHIAIQKMALQ 259
NGLK+ KT+ V A SS S+ E E + +Q + I + + Q
Sbjct: 101 NGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQ 160
Query: 260 TSGMN 264
+G++
Sbjct: 161 ATGVS 165
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%)
Query: 155 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 214
+FV L E+ + +L FG + +++D T KG+GF + +A A+L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 215 NGLKMGDKTLTVRRATA 231
NG ++G++ L V T+
Sbjct: 346 NGYRLGERVLQVSFKTS 362
Score = 37.0 bits (84), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%)
Query: 155 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 214
++V GLP ++ ++++L +G + ++ D+ TG S+G GF + + A L
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 215 NGLK 218
NG K
Sbjct: 187 NGQK 190
>sp|Q9Y388|RBMX2_HUMAN RNA-binding motif protein, X-linked 2 OS=Homo sapiens GN=RBMX2 PE=1
SV=2
Length = 322
Score = 62.0 bits (149), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 133 NLNLAAVGLASGAIGGAEGPDR--VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 190
N +G+A +E D +F+GGLPY TE I + +G + +LV+D+ T
Sbjct: 14 NEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKT 73
Query: 191 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 226
G SKG+ F Y+D T +A NG+K+ +T+ V
Sbjct: 74 GKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRV 109
>sp|B0BN49|RBMX2_RAT RNA-binding motif protein, X-linked 2 OS=Rattus norvegicus GN=Rbmx2
PE=2 SV=1
Length = 328
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 133 NLNLAAVGLASGAIGGAEGPDR--VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 190
N +G+A +E D +F+GGLPY TE I + +G + +LV+D+ T
Sbjct: 14 NEREVQLGVAEKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKT 73
Query: 191 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 226
G SKG+ F Y+D T +A NG+K+ +T+ V
Sbjct: 74 GKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRV 109
>sp|Q3SZM1|MK67I_BOVIN MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Bos taurus
GN=MKI67IP PE=2 SV=1
Length = 296
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 40/73 (54%)
Query: 152 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIAC 211
P ++VG LP ETQI+ FGT+ F L + + TGNSKGYGF ++ V IA
Sbjct: 44 PGVIYVGHLPPTLYETQIRAYFSQFGTVTRFRLSRSKKTGNSKGYGFVEFESEDVAKIAA 103
Query: 212 AALNGLKMGDKTL 224
+N G++ L
Sbjct: 104 ETMNNYLFGERLL 116
>sp|Q76LC6|RBM24_DANRE RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1
Length = 230
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%)
Query: 154 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 213
++FVGGLPY+ T++ +++ E FG + ++ DR TG S+GYGF D + D AC
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACKD 71
Query: 214 LNGLKMGDK 222
N + G K
Sbjct: 72 PNPIIDGRK 80
>sp|Q9H0Z9|RBM38_HUMAN RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE=1 SV=2
Length = 239
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Query: 125 LGPGQPSPNLNLAAVGLASGAIGGAEGPD---RVFVGGLPYYFTETQIKELLESFGTLHG 181
L P +P+ A GA+ G++ ++FVGGLPY+ T+ +++ E FG +
Sbjct: 3 LQPAPCAPSAGFPRPLAAPGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEE 62
Query: 182 FDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDK 222
++ DR TG S+GYGF D A + AC N + G K
Sbjct: 63 AVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRK 103
>sp|Q9I8B3|RB24B_XENLA RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-b PE=2 SV=1
Length = 224
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%)
Query: 154 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 213
++FVGGLPY+ T++ +++ E FG + ++ DR TG S+GYGF D A + AC
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 214 LNGLKMGDK 222
N + G K
Sbjct: 72 PNPIIDGRK 80
>sp|Q6GQD3|RB24A_XENLA RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-a PE=2 SV=1
Length = 225
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%)
Query: 154 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 213
++FVGGLPY+ T++ +++ E FG + ++ DR TG S+GYGF D A + AC
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 214 LNGLKMGDK 222
N + G K
Sbjct: 72 PNPIIDGRK 80
>sp|Q5ZJX4|RBM38_CHICK RNA-binding protein 38 OS=Gallus gallus GN=RBM38 PE=2 SV=1
Length = 215
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%)
Query: 154 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 213
++FVGGLPY+ T++ +++ E FG + ++ DR TG S+GYGF D A + AC
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 214 LNGLKMGDK 222
N + G K
Sbjct: 72 PNPIIDGRK 80
>sp|Q6P8A7|RBM24_XENTR RNA-binding protein 24 OS=Xenopus tropicalis GN=rbm24 PE=2 SV=1
Length = 226
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%)
Query: 154 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 213
++FVGGLPY+ T++ +++ E FG + ++ DR TG S+GYGF D A + AC
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 214 LNGLKMGDK 222
N + G K
Sbjct: 72 PNPIIDGRK 80
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 146,032,157
Number of Sequences: 539616
Number of extensions: 6359336
Number of successful extensions: 17448
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 211
Number of HSP's that attempted gapping in prelim test: 15985
Number of HSP's gapped (non-prelim): 1442
length of query: 380
length of database: 191,569,459
effective HSP length: 119
effective length of query: 261
effective length of database: 127,355,155
effective search space: 33239695455
effective search space used: 33239695455
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)