Query 016936
Match_columns 380
No_of_seqs 139 out of 1880
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 04:09:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016936.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016936hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.2E-49 2.6E-54 394.7 36.3 344 23-378 166-509 (509)
2 TIGR01645 half-pint poly-U bin 100.0 8.9E-42 1.9E-46 331.3 33.9 322 30-380 105-612 (612)
3 TIGR01622 SF-CC1 splicing fact 100.0 4E-42 8.6E-47 336.4 31.8 313 27-375 84-452 (457)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.2E-40 2.7E-45 315.3 30.5 289 31-373 2-351 (352)
5 TIGR01648 hnRNP-R-Q heterogene 100.0 2.8E-36 6E-41 292.8 27.3 249 20-371 46-307 (578)
6 TIGR01628 PABP-1234 polyadenyl 100.0 6.9E-36 1.5E-40 299.0 29.7 274 31-372 87-365 (562)
7 TIGR01628 PABP-1234 polyadenyl 100.0 5.1E-36 1.1E-40 300.0 28.6 249 34-371 2-261 (562)
8 KOG0147 Transcriptional coacti 100.0 6.6E-38 1.4E-42 289.7 13.7 330 17-376 164-533 (549)
9 KOG0120 Splicing factor U2AF, 100.0 3E-37 6.4E-42 289.5 18.1 340 16-379 159-500 (500)
10 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.3E-35 2.8E-40 290.1 30.3 290 31-371 1-351 (481)
11 KOG0117 Heterogeneous nuclear 100.0 2.4E-35 5.2E-40 265.6 24.9 246 22-370 73-330 (506)
12 KOG0145 RNA-binding protein EL 100.0 5.4E-35 1.2E-39 246.0 20.5 293 30-372 39-359 (360)
13 KOG0144 RNA-binding protein CU 100.0 2.9E-34 6.3E-39 257.5 20.6 172 27-233 29-207 (510)
14 KOG0124 Polypyrimidine tract-b 100.0 3.5E-34 7.6E-39 251.7 16.8 324 28-380 109-544 (544)
15 KOG0148 Apoptosis-promoting RN 100.0 9.7E-34 2.1E-38 239.9 17.4 236 29-372 3-239 (321)
16 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 3E-32 6.4E-37 266.5 28.8 303 32-370 96-479 (481)
17 KOG0127 Nucleolar protein fibr 100.0 1.5E-32 3.2E-37 253.0 21.1 326 32-370 5-377 (678)
18 KOG0123 Polyadenylate-binding 100.0 9.1E-30 2E-34 237.1 20.3 243 33-370 2-245 (369)
19 TIGR01659 sex-lethal sex-letha 100.0 6.6E-30 1.4E-34 236.9 18.4 171 28-233 103-276 (346)
20 KOG0123 Polyadenylate-binding 100.0 8.3E-29 1.8E-33 230.7 19.9 287 13-372 59-350 (369)
21 TIGR01659 sex-lethal sex-letha 100.0 5.1E-27 1.1E-31 217.7 21.3 172 148-372 103-276 (346)
22 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1E-26 2.3E-31 220.1 23.4 192 29-232 86-349 (352)
23 KOG0148 Apoptosis-promoting RN 99.9 7.2E-27 1.6E-31 198.3 15.1 185 29-238 59-244 (321)
24 KOG0110 RNA-binding protein (R 99.9 1.5E-26 3.2E-31 220.2 18.2 289 28-372 381-694 (725)
25 TIGR01645 half-pint poly-U bin 99.9 9.9E-26 2.1E-30 219.6 18.5 176 152-370 107-283 (612)
26 KOG0127 Nucleolar protein fibr 99.9 6.1E-24 1.3E-28 196.4 22.2 190 32-233 117-379 (678)
27 TIGR01622 SF-CC1 splicing fact 99.9 2.1E-23 4.7E-28 204.2 18.7 178 151-370 88-265 (457)
28 KOG0131 Splicing factor 3b, su 99.9 6.6E-24 1.4E-28 170.4 11.9 165 31-235 8-180 (203)
29 KOG0144 RNA-binding protein CU 99.9 9.5E-24 2.1E-28 190.1 12.9 171 153-376 35-211 (510)
30 KOG1548 Transcription elongati 99.9 1.6E-22 3.4E-27 177.7 18.1 213 150-372 132-353 (382)
31 KOG0145 RNA-binding protein EL 99.9 2.8E-22 6E-27 169.5 17.9 199 27-231 122-357 (360)
32 TIGR01648 hnRNP-R-Q heterogene 99.9 1.8E-22 4E-27 196.6 19.0 161 30-233 136-308 (578)
33 TIGR01642 U2AF_lg U2 snRNP aux 99.9 2.9E-22 6.3E-27 198.9 19.5 194 30-231 293-501 (509)
34 KOG0117 Heterogeneous nuclear 99.9 4.9E-22 1.1E-26 180.0 16.2 165 29-236 161-335 (506)
35 KOG0131 Splicing factor 3b, su 99.9 1.3E-21 2.8E-26 157.3 13.1 172 150-373 7-179 (203)
36 KOG1190 Polypyrimidine tract-b 99.9 2.2E-21 4.8E-26 173.7 12.5 309 29-370 25-372 (492)
37 KOG0110 RNA-binding protein (R 99.9 4.4E-21 9.6E-26 183.1 12.7 168 33-232 516-693 (725)
38 KOG0109 RNA-binding protein LA 99.8 7.8E-21 1.7E-25 163.3 12.4 148 153-371 3-150 (346)
39 KOG0109 RNA-binding protein LA 99.8 6.5E-21 1.4E-25 163.8 11.0 149 33-234 3-152 (346)
40 KOG0124 Polypyrimidine tract-b 99.8 2.7E-20 5.8E-25 164.5 12.2 173 153-367 114-286 (544)
41 KOG0146 RNA-binding protein ET 99.8 4.8E-20 1E-24 156.5 13.3 81 151-232 18-101 (371)
42 KOG1190 Polypyrimidine tract-b 99.8 3.8E-19 8.3E-24 159.5 19.7 300 31-370 149-490 (492)
43 KOG4212 RNA-binding protein hn 99.8 3.4E-18 7.3E-23 154.5 21.4 189 28-228 40-290 (608)
44 KOG4211 Splicing factor hnRNP- 99.8 1.7E-17 3.6E-22 152.8 19.3 174 28-230 6-180 (510)
45 KOG4205 RNA-binding protein mu 99.8 5.2E-19 1.1E-23 159.4 7.8 175 31-235 5-179 (311)
46 KOG1456 Heterogeneous nuclear 99.8 2.2E-17 4.8E-22 146.6 17.2 285 29-371 28-363 (494)
47 KOG0146 RNA-binding protein ET 99.8 2.7E-18 5.9E-23 145.9 10.3 81 153-233 286-366 (371)
48 KOG4206 Spliceosomal protein s 99.7 8.5E-17 1.8E-21 134.9 15.5 185 30-229 7-219 (221)
49 KOG0105 Alternative splicing f 99.7 3.6E-16 7.8E-21 126.1 15.6 174 29-227 3-185 (241)
50 PLN03134 glycine-rich RNA-bind 99.7 2.4E-16 5.2E-21 128.4 13.4 86 149-234 31-116 (144)
51 KOG4206 Spliceosomal protein s 99.7 2.7E-16 5.9E-21 131.8 13.5 195 153-369 10-220 (221)
52 KOG1365 RNA-binding protein Fu 99.7 6.3E-16 1.4E-20 137.8 13.4 293 30-371 58-362 (508)
53 KOG0147 Transcriptional coacti 99.7 2.1E-16 4.6E-21 147.5 10.0 178 153-371 180-358 (549)
54 KOG4205 RNA-binding protein mu 99.7 5.9E-16 1.3E-20 139.7 10.4 172 151-372 5-177 (311)
55 KOG1457 RNA binding protein (c 99.6 3.4E-14 7.4E-19 118.2 16.1 179 28-219 30-273 (284)
56 KOG0105 Alternative splicing f 99.6 6.2E-14 1.4E-18 113.3 16.5 181 152-372 6-191 (241)
57 PF00076 RRM_1: RNA recognitio 99.6 1.3E-14 2.9E-19 103.4 9.2 70 155-225 1-70 (70)
58 KOG1548 Transcription elongati 99.6 1E-13 2.3E-18 122.5 16.2 199 24-229 126-349 (382)
59 KOG4212 RNA-binding protein hn 99.6 3.7E-14 8.1E-19 128.6 12.9 202 148-367 40-290 (608)
60 KOG0106 Alternative splicing f 99.5 1.7E-14 3.7E-19 122.4 7.6 164 33-227 2-166 (216)
61 KOG0122 Translation initiation 99.5 8.6E-14 1.9E-18 117.5 11.2 82 151-232 188-269 (270)
62 KOG0125 Ataxin 2-binding prote 99.5 6E-14 1.3E-18 123.1 10.4 88 144-233 88-175 (376)
63 PLN03134 glycine-rich RNA-bind 99.5 6.4E-14 1.4E-18 114.2 9.8 85 27-117 29-114 (144)
64 PF14259 RRM_6: RNA recognitio 99.5 1.3E-13 2.8E-18 98.5 8.7 70 155-225 1-70 (70)
65 KOG0149 Predicted RNA-binding 99.5 1E-13 2.2E-18 116.7 7.2 78 153-231 13-90 (247)
66 KOG1457 RNA binding protein (c 99.4 1.3E-12 2.8E-17 108.9 12.4 203 149-358 31-273 (284)
67 KOG0121 Nuclear cap-binding pr 99.4 2.8E-13 6.1E-18 103.0 7.7 79 151-229 35-113 (153)
68 KOG4211 Splicing factor hnRNP- 99.4 3.8E-12 8.2E-17 117.8 16.6 171 151-369 9-180 (510)
69 KOG0106 Alternative splicing f 99.4 4.5E-13 9.7E-18 113.8 8.6 168 153-371 2-171 (216)
70 KOG1456 Heterogeneous nuclear 99.4 1.2E-10 2.5E-15 104.2 24.1 300 37-372 127-492 (494)
71 KOG4207 Predicted splicing fac 99.4 4E-13 8.6E-18 110.6 7.8 85 149-233 10-94 (256)
72 PLN03120 nucleic acid binding 99.4 9.7E-13 2.1E-17 114.8 10.6 75 153-231 5-79 (260)
73 PLN03120 nucleic acid binding 99.4 8E-13 1.7E-17 115.3 9.4 77 31-119 3-82 (260)
74 KOG0114 Predicted RNA-binding 99.4 6.9E-12 1.5E-16 91.8 12.4 80 149-231 15-94 (124)
75 PF00076 RRM_1: RNA recognitio 99.4 7.3E-13 1.6E-17 94.4 6.4 64 35-110 1-70 (70)
76 PF13893 RRM_5: RNA recognitio 99.4 1.8E-12 3.9E-17 88.0 7.9 56 305-368 1-56 (56)
77 KOG1365 RNA-binding protein Fu 99.4 6.2E-13 1.4E-17 118.9 6.0 191 32-230 161-360 (508)
78 smart00362 RRM_2 RNA recogniti 99.4 4.9E-12 1.1E-16 90.0 9.5 72 154-227 1-72 (72)
79 KOG0121 Nuclear cap-binding pr 99.4 1.4E-12 3.1E-17 99.2 6.3 77 27-115 31-114 (153)
80 KOG0126 Predicted RNA-binding 99.3 1.9E-13 4.2E-18 110.3 0.8 80 153-232 36-115 (219)
81 KOG0120 Splicing factor U2AF, 99.3 8.5E-12 1.8E-16 118.4 11.9 191 29-231 286-491 (500)
82 KOG0107 Alternative splicing f 99.3 4.8E-12 1E-16 101.8 8.4 76 152-232 10-85 (195)
83 smart00360 RRM RNA recognition 99.3 8.5E-12 1.8E-16 88.4 8.7 71 157-227 1-71 (71)
84 KOG0125 Ataxin 2-binding prote 99.3 5.2E-12 1.1E-16 111.1 8.7 88 275-377 93-180 (376)
85 KOG0113 U1 small nuclear ribon 99.3 7.3E-12 1.6E-16 108.9 9.4 79 152-230 101-179 (335)
86 PLN03213 repressor of silencin 99.3 7.2E-12 1.6E-16 115.7 9.8 76 153-232 11-88 (759)
87 PLN03121 nucleic acid binding 99.3 6.9E-12 1.5E-16 107.6 9.0 78 31-120 4-84 (243)
88 PLN03121 nucleic acid binding 99.3 1.3E-11 2.8E-16 105.9 10.6 74 153-230 6-79 (243)
89 KOG0130 RNA-binding protein RB 99.3 4.2E-12 9.2E-17 97.5 6.7 84 150-233 70-153 (170)
90 KOG4307 RNA binding protein RB 99.3 4.4E-11 9.4E-16 114.7 14.3 195 29-232 308-514 (944)
91 COG0724 RNA-binding proteins ( 99.3 2.5E-11 5.5E-16 110.5 12.2 80 152-231 115-194 (306)
92 KOG0111 Cyclophilin-type pepti 99.3 2.7E-12 5.8E-17 106.7 4.4 83 151-233 9-91 (298)
93 COG0724 RNA-binding proteins ( 99.3 9.2E-11 2E-15 106.8 14.3 145 32-188 115-261 (306)
94 cd00590 RRM RRM (RNA recogniti 99.3 6.5E-11 1.4E-15 84.6 10.2 74 154-228 1-74 (74)
95 PF14259 RRM_6: RNA recognitio 99.3 9E-12 2E-16 88.8 5.4 64 35-110 1-70 (70)
96 KOG0114 Predicted RNA-binding 99.2 3E-11 6.4E-16 88.6 7.6 75 28-114 14-92 (124)
97 KOG0108 mRNA cleavage and poly 99.2 2.2E-11 4.7E-16 115.1 8.6 80 153-232 19-98 (435)
98 KOG0149 Predicted RNA-binding 99.2 8.2E-12 1.8E-16 105.3 5.1 83 28-116 8-90 (247)
99 KOG0107 Alternative splicing f 99.2 1.8E-11 4E-16 98.4 6.8 74 31-116 9-84 (195)
100 KOG0122 Translation initiation 99.2 1.6E-11 3.5E-16 103.9 6.8 82 30-117 187-269 (270)
101 PF13893 RRM_5: RNA recognitio 99.2 9.5E-11 2.1E-15 79.5 7.9 56 169-229 1-56 (56)
102 smart00361 RRM_1 RNA recogniti 99.2 1.2E-10 2.6E-15 82.8 8.4 61 166-226 2-69 (70)
103 smart00362 RRM_2 RNA recogniti 99.2 1.3E-10 2.9E-15 82.4 8.4 66 34-111 1-71 (72)
104 KOG0129 Predicted RNA-binding 99.2 4.2E-10 9.1E-15 105.2 13.0 172 28-213 255-432 (520)
105 KOG4207 Predicted splicing fac 99.1 2.5E-11 5.5E-16 100.1 3.8 74 293-369 18-91 (256)
106 smart00361 RRM_1 RNA recogniti 99.1 1.7E-10 3.8E-15 82.0 6.4 61 304-366 4-70 (70)
107 PLN03213 repressor of silencin 99.1 2.5E-10 5.3E-15 105.7 8.4 77 29-117 7-88 (759)
108 KOG0126 Predicted RNA-binding 99.1 6E-12 1.3E-16 101.7 -3.1 88 27-120 30-118 (219)
109 cd00590 RRM RRM (RNA recogniti 99.1 1E-09 2.2E-14 78.3 8.6 68 34-113 1-74 (74)
110 KOG0113 U1 small nuclear ribon 99.0 1.3E-09 2.7E-14 95.1 8.5 79 29-113 98-177 (335)
111 KOG0130 RNA-binding protein RB 99.0 4.6E-10 1E-14 86.4 4.8 85 27-117 67-152 (170)
112 KOG0111 Cyclophilin-type pepti 99.0 2.5E-10 5.5E-15 95.1 3.2 81 25-117 3-90 (298)
113 KOG4454 RNA binding protein (R 98.9 1.4E-10 3.1E-15 96.5 0.3 150 28-228 5-159 (267)
114 smart00360 RRM RNA recognition 98.9 3.5E-09 7.6E-14 74.7 7.5 64 37-112 1-71 (71)
115 KOG4208 Nucleolar RNA-binding 98.9 2.7E-09 5.8E-14 88.6 7.5 81 152-232 49-130 (214)
116 KOG0153 Predicted RNA-binding 98.9 2.3E-09 5E-14 95.4 7.4 81 24-116 220-302 (377)
117 KOG0108 mRNA cleavage and poly 98.9 1.7E-09 3.7E-14 102.4 6.6 81 33-119 19-100 (435)
118 KOG0132 RNA polymerase II C-te 98.8 5.5E-09 1.2E-13 101.9 7.3 79 27-117 416-495 (894)
119 KOG1996 mRNA splicing factor [ 98.8 2.6E-09 5.5E-14 92.8 4.3 97 275-378 278-374 (378)
120 KOG4210 Nuclear localization s 98.8 4.7E-09 1E-13 94.9 5.0 177 30-233 86-265 (285)
121 KOG0153 Predicted RNA-binding 98.8 2.1E-08 4.5E-13 89.4 8.8 75 151-231 227-302 (377)
122 KOG0128 RNA-binding protein SA 98.8 5.5E-10 1.2E-14 110.0 -1.3 151 28-231 663-814 (881)
123 KOG0112 Large RNA-binding prot 98.8 7E-09 1.5E-13 102.8 5.7 164 25-235 365-534 (975)
124 KOG4307 RNA binding protein RB 98.8 3.5E-08 7.6E-13 95.2 9.6 196 153-373 312-516 (944)
125 KOG4661 Hsp27-ERE-TATA-binding 98.7 9.5E-08 2E-12 90.2 10.4 85 149-233 402-486 (940)
126 KOG0128 RNA-binding protein SA 98.7 9.9E-10 2.1E-14 108.2 -3.2 241 28-370 567-814 (881)
127 KOG0533 RRM motif-containing p 98.7 8.9E-08 1.9E-12 83.6 9.1 86 149-235 80-165 (243)
128 KOG0415 Predicted peptidyl pro 98.7 4.3E-08 9.2E-13 87.5 7.0 81 152-232 239-319 (479)
129 KOG0226 RNA-binding proteins [ 98.7 5.1E-08 1.1E-12 83.4 6.7 132 77-231 137-269 (290)
130 KOG0132 RNA polymerase II C-te 98.7 5.5E-08 1.2E-12 95.1 7.8 78 149-232 418-495 (894)
131 KOG0112 Large RNA-binding prot 98.7 2.4E-08 5.1E-13 99.1 5.2 160 149-370 369-530 (975)
132 KOG0226 RNA-binding proteins [ 98.6 2.1E-08 4.6E-13 85.7 2.9 167 154-368 98-267 (290)
133 KOG4208 Nucleolar RNA-binding 98.6 8.9E-08 1.9E-12 79.7 5.9 66 303-371 64-130 (214)
134 KOG4660 Protein Mei2, essentia 98.5 2.5E-07 5.4E-12 87.7 7.2 188 17-231 60-249 (549)
135 KOG0415 Predicted peptidyl pro 98.5 3.1E-07 6.7E-12 82.1 6.5 81 275-370 238-318 (479)
136 KOG0129 Predicted RNA-binding 98.5 5.1E-06 1.1E-10 78.3 14.4 182 145-365 252-448 (520)
137 KOG4661 Hsp27-ERE-TATA-binding 98.4 3.6E-07 7.9E-12 86.4 6.3 83 28-116 401-484 (940)
138 KOG4454 RNA binding protein (R 98.4 1.7E-07 3.7E-12 78.4 3.0 79 149-229 6-84 (267)
139 KOG0116 RasGAP SH3 binding pro 98.4 1E-06 2.2E-11 83.2 8.3 80 152-232 288-367 (419)
140 KOG4210 Nuclear localization s 98.4 3.7E-07 8E-12 82.7 4.5 179 151-373 87-266 (285)
141 KOG2193 IGF-II mRNA-binding pr 98.4 3.6E-08 7.9E-13 89.9 -2.2 155 153-372 2-158 (584)
142 PF04059 RRM_2: RNA recognitio 98.3 5.9E-06 1.3E-10 61.8 9.7 78 153-230 2-85 (97)
143 KOG4660 Protein Mei2, essentia 98.3 7E-07 1.5E-11 84.7 5.2 68 153-225 76-143 (549)
144 KOG4209 Splicing factor RNPS1, 98.3 1E-06 2.3E-11 77.1 5.6 81 151-232 100-180 (231)
145 KOG2193 IGF-II mRNA-binding pr 98.3 7E-08 1.5E-12 88.1 -2.4 152 33-231 2-156 (584)
146 KOG4676 Splicing factor, argin 98.3 5.8E-07 1.2E-11 81.5 3.2 180 33-220 8-214 (479)
147 KOG0116 RasGAP SH3 binding pro 98.2 2.5E-06 5.4E-11 80.6 7.0 79 27-113 283-363 (419)
148 KOG2202 U2 snRNP splicing fact 98.2 9.5E-07 2.1E-11 76.1 2.4 74 298-375 78-152 (260)
149 PF11608 Limkain-b1: Limkain b 98.1 2.2E-05 4.8E-10 55.9 8.6 72 33-115 3-75 (90)
150 KOG0151 Predicted splicing reg 98.1 5.6E-06 1.2E-10 80.6 7.3 81 151-231 173-256 (877)
151 KOG4209 Splicing factor RNPS1, 98.1 2E-06 4.4E-11 75.3 3.4 81 27-113 96-176 (231)
152 PF11608 Limkain-b1: Limkain b 98.1 2.3E-05 5E-10 55.8 7.4 64 296-372 14-78 (90)
153 KOG0533 RRM motif-containing p 98.1 1.9E-05 4.2E-10 69.1 8.6 81 28-118 79-163 (243)
154 PF04059 RRM_2: RNA recognitio 98.0 1.8E-05 3.8E-10 59.3 6.7 79 33-115 2-85 (97)
155 KOG0151 Predicted splicing reg 98.0 1.1E-05 2.3E-10 78.7 5.6 78 29-118 171-258 (877)
156 PF08777 RRM_3: RNA binding mo 97.8 5.3E-05 1.2E-09 58.0 5.5 69 154-228 3-76 (105)
157 KOG1995 Conserved Zn-finger pr 97.7 4.1E-05 8.9E-10 69.3 4.9 85 149-233 63-155 (351)
158 COG5175 MOT2 Transcriptional r 97.7 9.6E-05 2.1E-09 66.1 6.5 65 306-370 138-202 (480)
159 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00022 4.8E-09 47.2 5.7 52 153-211 2-53 (53)
160 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00019 4.1E-09 47.5 5.3 53 32-97 1-53 (53)
161 PF08777 RRM_3: RNA binding mo 97.5 0.0002 4.4E-09 54.8 4.7 68 33-112 2-75 (105)
162 KOG4676 Splicing factor, argin 97.4 0.00075 1.6E-08 61.8 8.9 204 152-372 7-227 (479)
163 KOG0115 RNA-binding protein p5 97.4 0.00046 9.9E-09 59.8 6.5 100 92-228 6-110 (275)
164 COG5175 MOT2 Transcriptional r 97.3 0.00059 1.3E-08 61.2 6.6 80 153-232 115-203 (480)
165 KOG2314 Translation initiation 97.3 0.0015 3.2E-08 62.6 8.9 88 275-370 55-143 (698)
166 PF05172 Nup35_RRM: Nup53/35/4 97.3 0.0011 2.4E-08 50.0 6.6 72 30-113 4-88 (100)
167 KOG1995 Conserved Zn-finger pr 97.2 0.00037 8.1E-09 63.2 4.4 90 29-118 63-155 (351)
168 PF08952 DUF1866: Domain of un 97.2 0.0029 6.2E-08 50.7 8.9 60 300-371 48-107 (146)
169 KOG4849 mRNA cleavage factor I 97.2 0.00032 6.9E-09 63.1 3.8 77 153-229 81-159 (498)
170 PF05172 Nup35_RRM: Nup53/35/4 97.1 0.002 4.4E-08 48.6 6.3 75 153-229 7-89 (100)
171 KOG3152 TBP-binding protein, a 97.0 0.00046 1E-08 59.7 2.9 71 153-223 75-157 (278)
172 KOG2314 Translation initiation 96.8 0.0054 1.2E-07 58.9 8.4 77 151-228 57-140 (698)
173 KOG1855 Predicted RNA-binding 96.8 0.0035 7.5E-08 58.3 6.5 68 152-219 231-311 (484)
174 KOG1996 mRNA splicing factor [ 96.7 0.0061 1.3E-07 53.9 6.9 64 167-230 301-365 (378)
175 PF08675 RNA_bind: RNA binding 96.6 0.0084 1.8E-07 42.9 6.3 54 154-215 10-63 (87)
176 KOG1855 Predicted RNA-binding 96.3 0.0036 7.8E-08 58.1 3.5 63 27-101 226-307 (484)
177 PF08952 DUF1866: Domain of un 96.3 0.024 5.2E-07 45.5 7.6 56 168-232 52-107 (146)
178 PF04847 Calcipressin: Calcipr 96.2 0.016 3.4E-07 49.1 6.6 62 302-372 9-72 (184)
179 PF10309 DUF2414: Protein of u 96.1 0.04 8.7E-07 37.4 7.0 54 153-214 6-62 (62)
180 KOG3152 TBP-binding protein, a 96.0 0.004 8.7E-08 54.0 2.1 66 31-108 73-157 (278)
181 PF10309 DUF2414: Protein of u 96.0 0.045 9.8E-07 37.2 6.6 56 31-97 4-59 (62)
182 KOG2202 U2 snRNP splicing fact 95.9 0.0045 9.7E-08 53.9 2.2 65 167-232 83-148 (260)
183 KOG2135 Proteins containing th 95.6 0.011 2.4E-07 55.7 3.4 80 25-116 365-445 (526)
184 KOG2135 Proteins containing th 94.9 0.017 3.8E-07 54.4 2.4 60 302-371 387-446 (526)
185 KOG2416 Acinus (induces apopto 94.8 0.02 4.4E-07 55.5 2.8 78 28-116 440-521 (718)
186 KOG2068 MOT2 transcription fac 94.7 0.016 3.4E-07 52.6 1.5 62 307-370 99-162 (327)
187 KOG2591 c-Mpl binding protein, 94.4 0.14 3.1E-06 49.4 7.4 68 153-227 176-247 (684)
188 KOG0115 RNA-binding protein p5 94.4 0.12 2.5E-06 45.2 6.1 95 204-359 4-98 (275)
189 PF07576 BRAP2: BRCA1-associat 94.2 0.66 1.4E-05 35.7 9.3 65 154-220 15-80 (110)
190 PF15023 DUF4523: Protein of u 94.1 0.19 4.1E-06 40.0 6.1 70 153-230 87-160 (166)
191 KOG4285 Mitotic phosphoprotein 94.1 0.21 4.6E-06 44.6 7.2 73 152-232 197-270 (350)
192 KOG2416 Acinus (induces apopto 93.9 0.099 2.1E-06 50.9 5.2 75 150-230 442-520 (718)
193 KOG4285 Mitotic phosphoprotein 93.8 0.41 8.8E-06 42.9 8.3 69 32-113 197-266 (350)
194 PF04847 Calcipressin: Calcipr 92.9 0.47 1E-05 40.2 7.3 62 165-232 8-71 (184)
195 KOG2068 MOT2 transcription fac 92.7 0.048 1E-06 49.6 1.1 80 153-232 78-163 (327)
196 PF03467 Smg4_UPF3: Smg-4/UPF3 92.4 0.17 3.7E-06 42.7 4.0 79 153-231 8-97 (176)
197 KOG4849 mRNA cleavage factor I 92.4 0.17 3.8E-06 46.0 4.1 73 30-112 78-157 (498)
198 PF08675 RNA_bind: RNA binding 92.4 1.1 2.3E-05 32.4 7.3 41 303-354 23-63 (87)
199 PF03467 Smg4_UPF3: Smg-4/UPF3 92.0 0.075 1.6E-06 44.8 1.3 69 29-106 4-82 (176)
200 PF11767 SET_assoc: Histone ly 91.4 0.38 8.3E-06 33.2 4.1 51 303-365 15-65 (66)
201 PF03880 DbpA: DbpA RNA bindin 90.8 1.5 3.3E-05 31.0 6.9 59 162-229 11-74 (74)
202 KOG0804 Cytoplasmic Zn-finger 90.8 1.3 2.8E-05 42.1 8.2 68 152-221 74-142 (493)
203 PF15023 DUF4523: Protein of u 90.6 1.1 2.4E-05 35.7 6.5 71 29-113 83-158 (166)
204 PF10567 Nab6_mRNP_bdg: RNA-re 90.1 6.8 0.00015 35.3 11.6 184 149-354 12-212 (309)
205 PF07292 NID: Nmi/IFP 35 domai 89.8 0.47 1E-05 34.8 3.6 70 83-174 1-74 (88)
206 KOG2253 U1 snRNP complex, subu 88.0 0.43 9.3E-06 47.3 3.0 71 27-112 35-106 (668)
207 PF03880 DbpA: DbpA RNA bindin 87.2 1.8 3.8E-05 30.7 5.1 53 304-368 17-74 (74)
208 PF11767 SET_assoc: Histone ly 85.5 3.2 7E-05 28.7 5.5 54 43-111 11-65 (66)
209 PF07576 BRAP2: BRCA1-associat 84.9 6.9 0.00015 30.1 7.7 62 304-370 29-94 (110)
210 KOG4574 RNA-binding protein (c 84.3 0.78 1.7E-05 46.8 2.8 74 154-233 300-375 (1007)
211 KOG4574 RNA-binding protein (c 83.3 1.3 2.7E-05 45.4 3.7 70 34-115 300-372 (1007)
212 KOG2591 c-Mpl binding protein, 79.0 5.2 0.00011 39.2 6.0 72 275-366 172-247 (684)
213 KOG2891 Surface glycoprotein [ 76.7 0.63 1.4E-05 41.1 -0.6 56 303-358 176-247 (445)
214 KOG0804 Cytoplasmic Zn-finger 69.9 22 0.00047 34.2 7.6 64 32-106 74-142 (493)
215 KOG4410 5-formyltetrahydrofola 68.0 5.5 0.00012 35.6 3.1 48 33-91 331-378 (396)
216 KOG2318 Uncharacterized conser 67.0 53 0.0011 32.7 9.7 137 27-232 169-308 (650)
217 KOG2253 U1 snRNP complex, subu 65.7 3.6 7.9E-05 41.1 1.8 68 152-228 40-107 (668)
218 KOG4019 Calcineurin-mediated s 65.3 9 0.0002 32.0 3.7 59 303-370 30-89 (193)
219 KOG4410 5-formyltetrahydrofola 64.5 26 0.00056 31.5 6.5 48 153-206 331-379 (396)
220 PF10567 Nab6_mRNP_bdg: RNA-re 63.6 1.2E+02 0.0026 27.7 11.5 169 28-216 11-213 (309)
221 PF03468 XS: XS domain; Inter 59.9 14 0.00029 28.8 3.7 50 154-206 10-68 (116)
222 PF14111 DUF4283: Domain of un 57.4 7.4 0.00016 31.6 2.0 110 43-185 28-138 (153)
223 KOG4019 Calcineurin-mediated s 54.4 11 0.00025 31.4 2.5 73 32-116 10-89 (193)
224 PF15513 DUF4651: Domain of un 49.3 44 0.00095 22.7 4.2 26 300-325 6-31 (62)
225 smart00596 PRE_C2HC PRE_C2HC d 48.4 53 0.0012 22.8 4.6 61 167-230 2-63 (69)
226 KOG4483 Uncharacterized conser 47.1 47 0.001 31.5 5.5 55 152-213 391-446 (528)
227 KOG4213 RNA-binding protein La 45.2 14 0.0003 30.8 1.7 85 13-113 90-183 (205)
228 KOG4483 Uncharacterized conser 42.3 79 0.0017 30.0 6.2 59 29-99 388-446 (528)
229 PF07530 PRE_C2HC: Associated 38.3 1.1E+02 0.0023 21.3 5.0 62 167-231 2-64 (68)
230 KOG1295 Nonsense-mediated deca 34.8 37 0.00081 31.9 3.0 64 30-104 5-77 (376)
231 KOG2891 Surface glycoprotein [ 33.7 46 0.00099 29.8 3.2 41 146-186 143-195 (445)
232 PF15519 RBM39linker: linker b 33.3 28 0.00061 24.6 1.5 21 275-295 51-71 (73)
233 PF08259 Periviscerokin: Periv 31.6 23 0.00051 15.0 0.5 7 3-9 3-9 (11)
234 PF07292 NID: Nmi/IFP 35 domai 29.8 37 0.00081 24.9 1.7 26 28-53 48-73 (88)
235 KOG4365 Uncharacterized conser 29.7 10 0.00022 36.2 -1.6 77 153-230 4-80 (572)
236 PF02714 DUF221: Domain of unk 28.8 88 0.0019 29.0 4.6 56 83-175 1-57 (325)
237 TIGR03636 L23_arch archaeal ri 27.2 2.3E+02 0.0051 20.2 6.6 58 154-214 15-74 (77)
238 PRK14548 50S ribosomal protein 26.2 2.6E+02 0.0056 20.3 6.7 58 154-214 22-81 (84)
239 PF02714 DUF221: Domain of unk 25.9 73 0.0016 29.5 3.4 35 197-233 1-35 (325)
240 PF06883 RNA_pol_Rpa2_4: RNA p 24.4 84 0.0018 21.0 2.5 37 342-380 5-46 (58)
241 PHA01632 hypothetical protein 24.3 1.8E+02 0.004 19.1 3.9 22 154-175 18-39 (64)
242 PF03439 Spt5-NGN: Early trans 24.2 1.2E+02 0.0027 21.8 3.6 38 313-358 32-69 (84)
243 KOG2318 Uncharacterized conser 24.1 1.2E+02 0.0025 30.5 4.3 39 335-373 270-310 (650)
244 PRK08559 nusG transcription an 23.5 2.7E+02 0.0058 22.7 5.9 44 303-355 23-68 (153)
245 PF15407 Spo7_2_N: Sporulation 23.4 42 0.0009 23.3 0.9 31 26-56 21-51 (67)
246 KOG4213 RNA-binding protein La 21.6 2.8E+02 0.0062 23.4 5.5 52 303-359 124-175 (205)
247 PF08442 ATP-grasp_2: ATP-gras 20.8 1.8E+02 0.004 25.0 4.6 69 304-378 29-107 (202)
248 PF11823 DUF3343: Protein of u 20.2 1.5E+02 0.0034 20.5 3.4 27 335-361 3-29 (73)
No 1
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=1.2e-49 Score=394.70 Aligned_cols=344 Identities=47% Similarity=0.747 Sum_probs=269.5
Q ss_pred ccchhhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHHHcCCc
Q 016936 23 VMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGI 102 (380)
Q Consensus 23 ~~~~~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai~l~~~ 102 (380)
.+.++.++..++|||+|||+.+|+++|+++|++++...+.....++.+|..+.+.+++|||||+|.+.++|..||+|++.
T Consensus 166 ~~~~~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al~l~g~ 245 (509)
T TIGR01642 166 PYQQQATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAMALDSI 245 (509)
T ss_pred ccCccCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhhcCCCe
Confidence 44557789999999999999999999999999998777655555566789999999999999999999999999999999
Q ss_pred eecCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEE
Q 016936 103 IFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGF 182 (380)
Q Consensus 103 ~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v 182 (380)
.+.|++|+|.++..+..............+..+......+..........++|||+|||..+++++|+++|+.||.|..+
T Consensus 246 ~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~ 325 (509)
T TIGR01642 246 IYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAF 325 (509)
T ss_pred EeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEE
Confidence 99999999998776653221111111111111111111111222234556899999999999999999999999999999
Q ss_pred EEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhcC
Q 016936 183 DLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSG 262 (380)
Q Consensus 183 ~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (380)
.++.++.+|.++|||||+|.+.++|..|++.|+|..+.|+.|.|.++................. .. .....
T Consensus 326 ~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~------~~---~~~~~ 396 (509)
T TIGR01642 326 NLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAP------VT---LLAKA 396 (509)
T ss_pred EEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccc------cc---ccccc
Confidence 9999988899999999999999999999999999999999999999865433221111100000 00 00000
Q ss_pred ccccCCCCCccCCccceEEEEeccCCcccCCChHHHHHHHHHHHHhhcccCCeEEEEecCCCCCCCCCCCccEEEEEeec
Q 016936 263 MNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYD 342 (380)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~f~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~ 342 (380)
. ..........++.++.|.|+++.+++.++.+|.++.++|+++|++||.|.+|.|++........+|.|+|||+|.+
T Consensus 397 ~---~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~ 473 (509)
T TIGR01642 397 L---SQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYAD 473 (509)
T ss_pred c---hhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECC
Confidence 0 0000011245789999999999999999999999999999999999999999998865444445678899999999
Q ss_pred hhhHHHHHHHHcCcccCCeEEEEEeccccccccccC
Q 016936 343 AVGCATAKNALSGRKFGGNTVNAFYYPEDKYFNKDY 378 (380)
Q Consensus 343 ~~~A~~A~~~l~g~~i~gr~l~v~~~~~~~~~~~~~ 378 (380)
+++|++|++.|||++|+|+.|.|.|++++.|+.+.|
T Consensus 474 ~e~A~~A~~~lnGr~~~gr~v~~~~~~~~~~~~~~~ 509 (509)
T TIGR01642 474 VRSAEKAMEGMNGRKFNDRVVVAAFYGEDCYKAGDY 509 (509)
T ss_pred HHHHHHHHHHcCCCEECCeEEEEEEeCHHHhhccCC
Confidence 999999999999999999999999999999999987
No 2
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=8.9e-42 Score=331.33 Aligned_cols=322 Identities=27% Similarity=0.407 Sum_probs=233.6
Q ss_pred cccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceecCce
Q 016936 30 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 108 (380)
Q Consensus 30 ~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~g~~ 108 (380)
...|+|||+|||+++++++|+++|++||.|... ..+.+...++++|||||+|.+.++|.+|+ .+||..|.|++
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV------~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~ 178 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSI------NMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRN 178 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEE------EEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecce
Confidence 567899999999999999999999999984321 01111123568999999999999999999 79999999999
Q ss_pred EEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC
Q 016936 109 VRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDR 188 (380)
Q Consensus 109 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~ 188 (380)
|+|.++....... ..... ........++|||+|||.++++++|+++|+.||.|.+|++.+++
T Consensus 179 IkV~rp~~~p~a~----------~~~~~--------~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~ 240 (612)
T TIGR01645 179 IKVGRPSNMPQAQ----------PIIDM--------VQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAP 240 (612)
T ss_pred eeecccccccccc----------ccccc--------ccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecC
Confidence 9998754331110 00000 00112234699999999999999999999999999999999998
Q ss_pred CCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccCCCCC--------hhHHHHHHH---HHH--HHHHHHH
Q 016936 189 DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQS--------KTEQESILA---QAQ--QHIAIQK 255 (380)
Q Consensus 189 ~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~~~~~--------~~~~~~~~~---~~~--~~~~~~~ 255 (380)
.++.++|||||+|.+.++|.+|++.||+..++|+.|+|.++....... .+....... .+. .......
T Consensus 241 ~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP~~~~~pa~~~~~p~aaa~Aaaaa~a~~~a~~~~~~ 320 (612)
T TIGR01645 241 TGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAG 320 (612)
T ss_pred CCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCccccCCCCCCCCCchHHHHHHHHhhhhhhhhhhhhc
Confidence 889999999999999999999999999999999999999977532111 000000000 000 0000000
Q ss_pred HH-hh--------------------------------------------hcC-cc-----cc------------CCCC--
Q 016936 256 MA-LQ--------------------------------------------TSG-MN-----TL------------GGGM-- 270 (380)
Q Consensus 256 ~~-~~--------------------------------------------~~~-~~-----~~------------~~~~-- 270 (380)
.. .. ..+ +. .+ +...
T Consensus 321 ~a~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (612)
T TIGR01645 321 AAVLGPRAQSPATPSSSLPTDIGNKAVVSSAKKEAEEVPPLPQAAPAVVKPGPMEIPTPVPPPGLAIPSLVAPPGLVAPT 400 (612)
T ss_pred ccccccccCCCccccccccccccccccccccCCcccCCCCCccccccccCCCCcccccCCCCccccccccCCCccccCCC
Confidence 00 00 000 00 00 0000
Q ss_pred --------------------------------------------------------------------------------
Q 016936 271 -------------------------------------------------------------------------------- 270 (380)
Q Consensus 271 -------------------------------------------------------------------------------- 270 (380)
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (612)
T TIGR01645 401 EINPSFLASPRKKMKREKLPVTFGALDDTLAWKEPSKEDQTSEDGKMLAIMGEAAAALALEPKKKKKEKEGEELQPKLVM 480 (612)
T ss_pred cCchhhhcCcccccccccccccccccccchhccccchhhhhhhhhhhcccchhhHHHHhhhhhHHhhhhhhhhhcccccc
Confidence
Q ss_pred --------------------------CccCCccceEEEEeccCCcccCCChHHHHHHHHHHHHhhcccCCeEEEEecCCC
Q 016936 271 --------------------------SLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPD 324 (380)
Q Consensus 271 --------------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~f~~~G~I~~v~i~~~~ 324 (380)
.......+++++|.|+++.+++.+ ++++||+++|++||.|.+|.|....
T Consensus 481 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~rp~~S~vVvL~NMv~~~elde-----dl~eDV~eEC~K~G~V~~v~I~~~~ 555 (612)
T TIGR01645 481 NSEDASLASQEGMSIRGNSARHLVMQKLMRTNRSNVIVLRNMVTPQDIDE-----FLEGEIREECGKFGVVDRVIINFEK 555 (612)
T ss_pred cccccccccccccccccchhhHHHHHhhcCCCCCCEEEEeCCCChHHhHH-----HHHHHHHHHhhcCceeEEEEEecCC
Confidence 000123578899999998877643 3668999999999999999998854
Q ss_pred CC-CCCCCCccEEEEEeechhhHHHHHHHHcCcccCCeEEEEEeccccccccccCCC
Q 016936 325 QN-GGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFNKDYSA 380 (380)
Q Consensus 325 ~~-~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~~~~~~~~~~~~~ 380 (380)
.. .....+.|.+||+|++.++|.+|+..||||+|+||.|.++|+++++|..++|++
T Consensus 556 ~~~~~~~~~~g~VfV~F~~~~~A~~A~~~LnGR~F~GR~V~a~~yd~~~f~~~~l~~ 612 (612)
T TIGR01645 556 QGEEEDAEIIVKIFVEFSDSMEVDRAKAALDGRFFGGRTVVAEAYDQILFDHADLSG 612 (612)
T ss_pred CCccccccceEEEEEEECCHHHHHHHHHHhcCCeECCeEEEEEEcCHHHhhccccCC
Confidence 32 111234567899999999999999999999999999999999999999999986
No 3
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=4e-42 Score=336.38 Aligned_cols=313 Identities=27% Similarity=0.437 Sum_probs=236.1
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEe------cCCCcEEEEEeCCHHHHHHHHHcC
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASNAMALD 100 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~------~~~~g~afV~f~~~~~a~~ai~l~ 100 (380)
.++++.++|||+|||..+++++|+++|++||. |.++.+ ++++|||||+|.+.++|.+||.++
T Consensus 84 ~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~------------v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~ 151 (457)
T TIGR01622 84 EAERDDRTVFVLQLALKARERDLYEFFSKVGK------------VRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALT 151 (457)
T ss_pred ccccCCcEEEEeCCCCCCCHHHHHHHHHhcCC------------eeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhC
Confidence 45778899999999999999999999999997 455544 456899999999999999999999
Q ss_pred CceecCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCee
Q 016936 101 GIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLH 180 (380)
Q Consensus 101 ~~~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~ 180 (380)
+..+.|++|.|.++........... ..........++|||+|||..+++++|+++|++||.|.
T Consensus 152 g~~~~g~~i~v~~~~~~~~~~~~~~-----------------~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~ 214 (457)
T TIGR01622 152 GQMLLGRPIIVQSSQAEKNRAAKAA-----------------THQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIE 214 (457)
T ss_pred CCEECCeeeEEeecchhhhhhhhcc-----------------cccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeE
Confidence 9999999999987533211100000 00000011257999999999999999999999999999
Q ss_pred EEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccCCCCChhHHHH----------H-HHHHHH
Q 016936 181 GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQES----------I-LAQAQQ 249 (380)
Q Consensus 181 ~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~----------~-~~~~~~ 249 (380)
.|.++.++.+|.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++............. . ......
T Consensus 215 ~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (457)
T TIGR01622 215 DVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEER 294 (457)
T ss_pred EEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccch
Confidence 99999998888999999999999999999999999999999999999976332111100000 0 000000
Q ss_pred HHHHHHHHhhh--cCccccCC----------------------------------CCCcc---CCccceEEEEeccCCcc
Q 016936 250 HIAIQKMALQT--SGMNTLGG----------------------------------GMSLF---GETLAKVLCLTEAITAD 290 (380)
Q Consensus 250 ~~~~~~~~~~~--~~~~~~~~----------------------------------~~~~~---~~~~~~~~~l~~~~~~~ 290 (380)
......+.... ++...++. ..... ...+++|+.|.|+++..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~ 374 (457)
T TIGR01622 295 EQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPA 374 (457)
T ss_pred HHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCc
Confidence 00000000000 00000000 00000 23678899999999998
Q ss_pred cCCChHHHHHHHHHHHHhhcccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCCeEEEEEeccc
Q 016936 291 ALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPE 370 (380)
Q Consensus 291 ~~~~~~~~~~~~~~L~~~f~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~~~ 370 (380)
+..++.++.++++||+++|++||.|+.|.+..... .|++||+|.+.++|.+|+..|||++|+||.|.++|+++
T Consensus 375 ~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~-------~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 375 TEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNS-------AGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVN 447 (457)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCC-------ceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcH
Confidence 88888899999999999999999999999975432 37889999999999999999999999999999999999
Q ss_pred ccccc
Q 016936 371 DKYFN 375 (380)
Q Consensus 371 ~~~~~ 375 (380)
+.|..
T Consensus 448 ~~~~~ 452 (457)
T TIGR01622 448 DVYDM 452 (457)
T ss_pred HHHHh
Confidence 98864
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=1.2e-40 Score=315.30 Aligned_cols=289 Identities=19% Similarity=0.275 Sum_probs=211.2
Q ss_pred ccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEe------cCCCcEEEEEeCCHHHHHHHH-HcCCce
Q 016936 31 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASNAM-ALDGII 103 (380)
Q Consensus 31 ~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~------~~~~g~afV~f~~~~~a~~ai-~l~~~~ 103 (380)
+..+|||+|||.++++++|+++|++||+ |.++++ ++++|||||+|.+.++|.+|| .+++..
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~------------i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~ 69 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGE------------IESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLR 69 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCC------------EEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEE
Confidence 4689999999999999999999999998 444443 457799999999999999999 799999
Q ss_pred ecCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEE
Q 016936 104 FEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFD 183 (380)
Q Consensus 104 i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~ 183 (380)
+.|++|+|.++..... .....+|||+|||..+++++|+++|++||.|..++
T Consensus 70 l~g~~i~v~~a~~~~~-----------------------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~ 120 (352)
T TIGR01661 70 LQNKTIKVSYARPSSD-----------------------------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSR 120 (352)
T ss_pred ECCeeEEEEeeccccc-----------------------------ccccceEEECCccccCCHHHHHHHHhccCCEEEEE
Confidence 9999999998643211 11225899999999999999999999999999999
Q ss_pred EeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCC--eEEEEEEcccCCCCChhHHHHHHHH----HHH--------
Q 016936 184 LVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD--KTLTVRRATASSGQSKTEQESILAQ----AQQ-------- 249 (380)
Q Consensus 184 l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g--~~i~v~~~~~~~~~~~~~~~~~~~~----~~~-------- 249 (380)
++.+..++.++|||||+|.+.++|++|++.|||..+.| .+|.|.++................. ...
T Consensus 121 ~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (352)
T TIGR01661 121 ILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTIL 200 (352)
T ss_pred EEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccc
Confidence 99987788999999999999999999999999998877 6788888765431110000000000 000
Q ss_pred -------------------HHHHHHH-----Hhhhc-----CccccC----------CCCCc-cCCccceEEEEeccCCc
Q 016936 250 -------------------HIAIQKM-----ALQTS-----GMNTLG----------GGMSL-FGETLAKVLCLTEAITA 289 (380)
Q Consensus 250 -------------------~~~~~~~-----~~~~~-----~~~~~~----------~~~~~-~~~~~~~~~~l~~~~~~ 289 (380)
....... ..... ....+. .+... .......++.+.|+...
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~ 280 (352)
T TIGR01661 201 TAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPD 280 (352)
T ss_pred cccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCC
Confidence 0000000 00000 000000 00000 00122335666664322
Q ss_pred ccCCChHHHHHHHHHHHHhhcccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCCeEEEEEecc
Q 016936 290 DALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYP 369 (380)
Q Consensus 290 ~~~~~~~~~~~~~~~L~~~f~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~~ 369 (380)
.+.++|+++|++||.|.++.++++..++. ++ |+|||+|.+.++|.+|++.|||+.|+||.|+|.|+.
T Consensus 281 ----------~~e~~L~~~F~~fG~v~~v~i~~d~~t~~-sk--G~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~ 347 (352)
T TIGR01661 281 ----------TDETVLWQLFGPFGAVQNVKIIRDLTTNQ-CK--GYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKT 347 (352)
T ss_pred ----------CCHHHHHHHHHhCCCeEEEEEeEcCCCCC-cc--ceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcc
Confidence 22369999999999999999999876654 44 566999999999999999999999999999999998
Q ss_pred cccc
Q 016936 370 EDKY 373 (380)
Q Consensus 370 ~~~~ 373 (380)
.+.+
T Consensus 348 ~~~~ 351 (352)
T TIGR01661 348 NKAY 351 (352)
T ss_pred CCCC
Confidence 7643
No 5
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=2.8e-36 Score=292.82 Aligned_cols=249 Identities=19% Similarity=0.296 Sum_probs=196.4
Q ss_pred CccccchhhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEe-----cCCCcEEEEEeCCHHHHH
Q 016936 20 PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI-----NHEKKFAFVEMRTVEEAS 94 (380)
Q Consensus 20 ~~~~~~~~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~-----~~~~g~afV~f~~~~~a~ 94 (380)
|++.+........++|||+|||++++|++|+++|+++|.| .++++ ++++|||||+|.+.++|+
T Consensus 46 Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I------------~~vrl~~D~sG~sRGfaFV~F~~~e~A~ 113 (578)
T TIGR01648 46 PPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPI------------YELRLMMDFSGQNRGYAFVTFCGKEEAK 113 (578)
T ss_pred CCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCE------------EEEEEEECCCCCccceEEEEeCCHHHHH
Confidence 3334444445567999999999999999999999999984 44443 568999999999999999
Q ss_pred HHH-HcCCceec-CceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHH
Q 016936 95 NAM-ALDGIIFE-GVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKEL 172 (380)
Q Consensus 95 ~ai-~l~~~~i~-g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~ 172 (380)
+|| .||+..+. |+.|.|.++.. .++|||+|||+.+++++|.+.
T Consensus 114 ~Ai~~lng~~i~~Gr~l~V~~S~~-----------------------------------~~rLFVgNLP~~~TeeeL~ee 158 (578)
T TIGR01648 114 EAVKLLNNYEIRPGRLLGVCISVD-----------------------------------NCRLFVGGIPKNKKREEILEE 158 (578)
T ss_pred HHHHHcCCCeecCCcccccccccc-----------------------------------CceeEeecCCcchhhHHHHHH
Confidence 999 79998886 67777765321 258999999999999999999
Q ss_pred HHhcCC-eeEEEEe-eCCCCCCCceEEEEEEcChhHHHHHHHHhCC--CeeCCeEEEEEEcccCCCCChhHHHHHHHHHH
Q 016936 173 LESFGT-LHGFDLV-KDRDTGNSKGYGFCVYQDPAVTDIACAALNG--LKMGDKTLTVRRATASSGQSKTEQESILAQAQ 248 (380)
Q Consensus 173 F~~~G~-i~~v~l~-~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g--~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~ 248 (380)
|++++. +..+.+. ...+.++++|||||+|.++++|.+|+..|+. ..+.|+.|.|.|+.+.......
T Consensus 159 Fskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~~---------- 228 (578)
T TIGR01648 159 FSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDED---------- 228 (578)
T ss_pred hhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeeccccccccc----------
Confidence 999864 4444333 3334567899999999999999999998763 4678999999998654221100
Q ss_pred HHHHHHHHHhhhcCccccCCCCCccCCccceEEEEeccCCcccCCChHHHHHHHHHHHHhhccc--CCeEEEEecCCCCC
Q 016936 249 QHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKY--GTLVNVVIPRPDQN 326 (380)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~f~~~--G~I~~v~i~~~~~~ 326 (380)
.....+++.+.|.... .++++|+++|++| |.|++|.+++
T Consensus 229 -------------------------~~~~~k~LfVgNL~~~----------~tee~L~~~F~~f~~G~I~rV~~~r---- 269 (578)
T TIGR01648 229 -------------------------VMAKVKILYVRNLMTT----------TTEEIIEKSFSEFKPGKVERVKKIR---- 269 (578)
T ss_pred -------------------------ccccccEEEEeCCCCC----------CCHHHHHHHHHhcCCCceEEEEeec----
Confidence 0223456777764321 1226999999999 9999998764
Q ss_pred CCCCCCccEEEEEeechhhHHHHHHHHcCcccCCeEEEEEecccc
Q 016936 327 GGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 371 (380)
Q Consensus 327 ~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~~~~ 371 (380)
++|||+|.+.++|.+|++.|||..|+|+.|+|+|+...
T Consensus 270 -------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~ 307 (578)
T TIGR01648 270 -------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPV 307 (578)
T ss_pred -------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCC
Confidence 47899999999999999999999999999999999763
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=6.9e-36 Score=299.01 Aligned_cols=274 Identities=20% Similarity=0.313 Sum_probs=208.1
Q ss_pred ccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceecCceE
Q 016936 31 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAV 109 (380)
Q Consensus 31 ~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~g~~i 109 (380)
..++|||+|||.++++++|+++|+.||.|.... +.....++++|||||+|.+.++|.+|+ .+++..+.++.|
T Consensus 87 ~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~-------i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i 159 (562)
T TIGR01628 87 GVGNIFVKNLDKSVDNKALFDTFSKFGNILSCK-------VATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEV 159 (562)
T ss_pred CCCceEEcCCCccCCHHHHHHHHHhcCCcceeE-------eeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceE
Confidence 456899999999999999999999999854311 111112457899999999999999999 899999999999
Q ss_pred EEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC
Q 016936 110 RVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRD 189 (380)
Q Consensus 110 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~ 189 (380)
.|.+...+..... ......++|||+|||.++++++|+++|+.||.|..+.+..+.
T Consensus 160 ~v~~~~~~~~~~~------------------------~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~- 214 (562)
T TIGR01628 160 YVGRFIKKHEREA------------------------APLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG- 214 (562)
T ss_pred EEecccccccccc------------------------ccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-
Confidence 9976443322110 011223689999999999999999999999999999999985
Q ss_pred CCCCceEEEEEEcChhHHHHHHHHhCCCeeC----CeEEEEEEcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhcCccc
Q 016936 190 TGNSKGYGFCVYQDPAVTDIACAALNGLKMG----DKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNT 265 (380)
Q Consensus 190 ~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (380)
++.++|||||.|.+.++|.+|++.++|..+. |+.+.|.++..+. ++................
T Consensus 215 ~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~-----er~~~~~~~~~~~~~~~~--------- 280 (562)
T TIGR01628 215 SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRA-----EREAELRRKFEELQQERK--------- 280 (562)
T ss_pred CCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChh-----hhHHHHHhhHHhhhhhhh---------
Confidence 6899999999999999999999999999999 9999999875432 221111111111100000
Q ss_pred cCCCCCccCCccceEEEEeccCCcccCCChHHHHHHHHHHHHhhcccCCeEEEEecCCCCCCCCCCCccEEEEEeechhh
Q 016936 266 LGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVG 345 (380)
Q Consensus 266 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~f~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~ 345 (380)
.......+.+.|.... .+.++|+++|++||.|.+|+++.+. ++. ++ |+|||+|++.++
T Consensus 281 --------~~~~~~~l~V~nl~~~----------~~~~~L~~~F~~~G~i~~~~i~~d~-~g~-~~--g~gfV~f~~~~~ 338 (562)
T TIGR01628 281 --------MKAQGVNLYVKNLDDT----------VTDEKLRELFSECGEITSAKVMLDE-KGV-SR--GFGFVCFSNPEE 338 (562)
T ss_pred --------cccCCCEEEEeCCCCc----------cCHHHHHHHHHhcCCeEEEEEEECC-CCC-cC--CeEEEEeCCHHH
Confidence 0122233555553221 1226999999999999999999874 332 44 566999999999
Q ss_pred HHHHHHHHcCcccCCeEEEEEeccccc
Q 016936 346 CATAKNALSGRKFGGNTVNAFYYPEDK 372 (380)
Q Consensus 346 A~~A~~~l~g~~i~gr~l~v~~~~~~~ 372 (380)
|.+|+..|||+.|+|++|.|.|+..+.
T Consensus 339 A~~A~~~~~g~~~~gk~l~V~~a~~k~ 365 (562)
T TIGR01628 339 ANRAVTEMHGRMLGGKPLYVALAQRKE 365 (562)
T ss_pred HHHHHHHhcCCeeCCceeEEEeccCcH
Confidence 999999999999999999999998753
No 7
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=5.1e-36 Score=299.98 Aligned_cols=249 Identities=19% Similarity=0.341 Sum_probs=201.7
Q ss_pred eEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEe------cCCCcEEEEEeCCHHHHHHHH-HcCCceecC
Q 016936 34 RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 106 (380)
Q Consensus 34 ~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~------~~~~g~afV~f~~~~~a~~ai-~l~~~~i~g 106 (380)
+|||+|||.++||++|+++|++||. |.++++ .+++|||||+|.+.++|++|+ .+++..+.|
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~------------v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~g 69 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGP------------VLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGG 69 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCC------------EEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 6999999999999999999999998 444444 456799999999999999999 799999999
Q ss_pred ceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEee
Q 016936 107 VAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVK 186 (380)
Q Consensus 107 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~ 186 (380)
++|+|.|+...... ......+|||+|||.++++++|+++|+.||.|..|++..
T Consensus 70 k~i~i~~s~~~~~~---------------------------~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~ 122 (562)
T TIGR01628 70 KPIRIMWSQRDPSL---------------------------RRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVAT 122 (562)
T ss_pred eeEEeecccccccc---------------------------cccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeee
Confidence 99999995421100 011235899999999999999999999999999999998
Q ss_pred CCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhcCcccc
Q 016936 187 DRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTL 266 (380)
Q Consensus 187 ~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (380)
+. +|+++|||||+|.+.++|.+|++.++|..+.|+.|.|.....+.....
T Consensus 123 ~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~~----------------------------- 172 (562)
T TIGR01628 123 DE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHEREA----------------------------- 172 (562)
T ss_pred cC-CCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecccccccccc-----------------------------
Confidence 85 688999999999999999999999999999999999987543321110
Q ss_pred CCCCCccCCccceEEEEeccCCcccCCChHHHHHHHHHHHHhhcccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhH
Q 016936 267 GGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGC 346 (380)
Q Consensus 267 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~f~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A 346 (380)
......+.+.+.|.... .+.++|+++|++||.|.++.+.++.. + +..|+|||+|.+.++|
T Consensus 173 ------~~~~~~~~l~V~nl~~~----------~tee~L~~~F~~fG~i~~~~i~~~~~-g---~~~G~afV~F~~~e~A 232 (562)
T TIGR01628 173 ------APLKKFTNLYVKNLDPS----------VNEDKLRELFAKFGEITSAAVMKDGS-G---RSRGFAFVNFEKHEDA 232 (562)
T ss_pred ------ccccCCCeEEEeCCCCc----------CCHHHHHHHHHhcCCEEEEEEEECCC-C---CcccEEEEEECCHHHH
Confidence 00222234555553211 12269999999999999999988753 2 2346779999999999
Q ss_pred HHHHHHHcCcccC----CeEEEEEecccc
Q 016936 347 ATAKNALSGRKFG----GNTVNAFYYPED 371 (380)
Q Consensus 347 ~~A~~~l~g~~i~----gr~l~v~~~~~~ 371 (380)
.+|++.|||..|. |+.|.|.++...
T Consensus 233 ~~Av~~l~g~~i~~~~~g~~l~v~~a~~k 261 (562)
T TIGR01628 233 AKAVEEMNGKKIGLAKEGKKLYVGRAQKR 261 (562)
T ss_pred HHHHHHhCCcEecccccceeeEeecccCh
Confidence 9999999999999 999999988654
No 8
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=100.00 E-value=6.6e-38 Score=289.74 Aligned_cols=330 Identities=25% Similarity=0.353 Sum_probs=248.4
Q ss_pred CCCCccccchhhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHH
Q 016936 17 PLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNA 96 (380)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~a 96 (380)
|..........++++.||||+-.|+..+++.||.+||+..|++.. +.+|-+.....++|.|||+|.+.+++..|
T Consensus 164 p~r~~~~~l~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrd------VriI~Dr~s~rskgi~Yvef~D~~sVp~a 237 (549)
T KOG0147|consen 164 PPREASRILSPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRD------VRIIGDRNSRRSKGIAYVEFCDEQSVPLA 237 (549)
T ss_pred CcccccccCCchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcce------eEeeccccchhhcceeEEEEecccchhhH
Confidence 444444555578999999999999999999999999999999532 22333333456789999999999999999
Q ss_pred HHcCCceecCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCC-CEEEEcCCCCCCCHHHHHHHHHh
Q 016936 97 MALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGP-DRVFVGGLPYYFTETQIKELLES 175 (380)
Q Consensus 97 i~l~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~V~nlp~~~t~~~l~~~F~~ 175 (380)
|.|.|..+.|.+|.|..+..-... .... .+....++...+ ..+||+||.+.+++++|+.+|++
T Consensus 238 iaLsGqrllg~pv~vq~sEaeknr-~a~~---------------s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifep 301 (549)
T KOG0147|consen 238 IALSGQRLLGVPVIVQLSEAEKNR-AANA---------------SPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEP 301 (549)
T ss_pred hhhcCCcccCceeEecccHHHHHH-HHhc---------------cccccccccccchhhhhhcccccCchHHHHhhhccC
Confidence 999999999999999864321111 1100 000011111222 23999999999999999999999
Q ss_pred cCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccCCCCChh-----HHH-----HHHH
Q 016936 176 FGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKT-----EQE-----SILA 245 (380)
Q Consensus 176 ~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~~~~~~~-----~~~-----~~~~ 245 (380)
||.|..|.++.|..+|+++|||||+|.+.++|++|+..|||.++.|+.|+|.....+...+.. +.+ ....
T Consensus 302 fg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~ 381 (549)
T KOG0147|consen 302 FGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSL 381 (549)
T ss_pred cccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecccccccccccccchhhcccccc
Confidence 999999999999889999999999999999999999999999999999999976665433311 000 0000
Q ss_pred HHHHHHHHHHHHhhhcCc---------------------cccCCC-CCccCC-------ccceEEEEeccCCcccCCChH
Q 016936 246 QAQQHIAIQKMALQTSGM---------------------NTLGGG-MSLFGE-------TLAKVLCLTEAITADALADDE 296 (380)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~---------------------~~~~~~-~~~~~~-------~~~~~~~l~~~~~~~~~~~~~ 296 (380)
......++........+. ..++.. ....+. .++.|+.|+|++++....+.+
T Consensus 382 ~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n 461 (549)
T KOG0147|consen 382 GSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPN 461 (549)
T ss_pred ccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcc
Confidence 000001111111111000 000000 111122 789999999999999999999
Q ss_pred HHHHHHHHHHHhhcccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCCeEEEEEeccccccccc
Q 016936 297 EYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFNK 376 (380)
Q Consensus 297 ~~~~~~~~L~~~f~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~~~~~~~~~ 376 (380)
|-.++++|+.+.|++||.|.+|.+.+++. |++||.|.+.+.|..|+.+|||+||.||.|.+.|.+.+.|+..
T Consensus 462 ~d~eI~edV~Eec~k~g~v~hi~vd~ns~--------g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~~~Y~~~ 533 (549)
T KOG0147|consen 462 WDQEIREDVIEECGKHGKVCHIFVDKNSA--------GCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPLERYHSK 533 (549)
T ss_pred hhhHHHHHHHHHHHhcCCeeEEEEccCCC--------ceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeehhhhhhh
Confidence 99999999999999999999999988763 6999999999999999999999999999999999999998864
No 9
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=3e-37 Score=289.50 Aligned_cols=340 Identities=48% Similarity=0.833 Sum_probs=289.5
Q ss_pred CCCCCccccchhhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHH
Q 016936 16 FPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASN 95 (380)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ 95 (380)
.+..|.+.+..+.+...+.++|+++|..+.++....+|..--...+.+..+.++.+..+.++..+++||++|.+.++|..
T Consensus 159 ~~~~~~~~~~~~~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~nfa~ie~~s~~~at~ 238 (500)
T KOG0120|consen 159 LPQLPTPPMDSQATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEKNFAFIEFRSISEATE 238 (500)
T ss_pred cccCCCCccCcchhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccccceeEEecCCCchhh
Confidence 56677788888999999999999999999999999999998888887777777889999999999999999999999999
Q ss_pred HHHcCCceecCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHh
Q 016936 96 AMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLES 175 (380)
Q Consensus 96 ai~l~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~ 175 (380)
|+.+++..+.|.++++..+..++..........+ ....+.....+....+...+||++||...++.+++++...
T Consensus 239 ~~~~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~------~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~ 312 (500)
T KOG0120|consen 239 AMALDGIIFEGRPLKIRRPHDYQPVPGITLSPSQ------LGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDS 312 (500)
T ss_pred hhcccchhhCCCCceecccccccCCccchhhhcc------ccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHh
Confidence 9999999999999999988887765443333222 1112233344455667789999999999999999999999
Q ss_pred cCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccCCCCChhHHHHHHHHHHHHHHHHH
Q 016936 176 FGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQK 255 (380)
Q Consensus 176 ~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (380)
||.+....++.+..+|.++||||.+|.+......|++.|||+.+++..+.|..+.........+.. . . +.
T Consensus 313 fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~-~-~-~~------- 382 (500)
T KOG0120|consen 313 FGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFN-I-S-QS------- 382 (500)
T ss_pred cccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCC-c-c-cc-------
Confidence 999999999999888999999999999999999999999999999999999998765433322222 0 0 00
Q ss_pred HHhhhcCccccCCCC--CccCCccceEEEEeccCCcccCCChHHHHHHHHHHHHhhcccCCeEEEEecCCCCCCCCCCCc
Q 016936 256 MALQTSGMNTLGGGM--SLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGV 333 (380)
Q Consensus 256 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~f~~~G~I~~v~i~~~~~~~~~~~g~ 333 (380)
..++... ......++.+++|.|+++++++.++.+|.++.|+++..|++||.|.+|.+++....+...+|.
T Consensus 383 --------~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~ 454 (500)
T KOG0120|consen 383 --------QVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGT 454 (500)
T ss_pred --------ccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCc
Confidence 1111111 133478899999999999999999999999999999999999999999999986677778899
Q ss_pred cEEEEEeechhhHHHHHHHHcCcccCCeEEEEEeccccccccccCC
Q 016936 334 GKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFNKDYS 379 (380)
Q Consensus 334 g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~~~~~~~~~~~~ 379 (380)
|.+||+|++.+++++|+++|+|++|.||+|.++|+++++||+++|+
T Consensus 455 GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeDkY~~r~~~ 500 (500)
T KOG0120|consen 455 GKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDEDKYHAREFE 500 (500)
T ss_pred ccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHHHhhccccC
Confidence 9999999999999999999999999999999999999999999985
No 10
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=1.3e-35 Score=290.13 Aligned_cols=290 Identities=17% Similarity=0.146 Sum_probs=205.9
Q ss_pred ccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHHH---cCCceecCc
Q 016936 31 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA---LDGIIFEGV 107 (380)
Q Consensus 31 ~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai~---l~~~~i~g~ 107 (380)
++++|||+|||+++++++|+++|++||. |.++.+.+++++|||+|.+.++|.+|+. +++..+.|+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~------------V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~ 68 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGP------------VSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQ 68 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCC------------eeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCe
Confidence 5799999999999999999999999998 7778888899999999999999999994 578999999
Q ss_pred eEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeC
Q 016936 108 AVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKD 187 (380)
Q Consensus 108 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~ 187 (380)
+|+|.|+.......... . . ..........+|||.||++.+++++|+++|+.||.|.+|.+.++
T Consensus 69 ~l~v~~s~~~~~~~~~~---~----~----------~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~ 131 (481)
T TIGR01649 69 PAFFNYSTSQEIKRDGN---S----D----------FDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTK 131 (481)
T ss_pred EEEEEecCCcccccCCC---C----c----------ccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEec
Confidence 99999976543221100 0 0 00111223358999999999999999999999999999999876
Q ss_pred CCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCC--eEEEEEEcccCCCC-----Chh----------HHHHHHHHHHHH
Q 016936 188 RDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD--KTLTVRRATASSGQ-----SKT----------EQESILAQAQQH 250 (380)
Q Consensus 188 ~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g--~~i~v~~~~~~~~~-----~~~----------~~~~~~~~~~~~ 250 (380)
. + +|+|||+|.+.++|.+|++.|||..+.+ +.|+|.++....-. ... ++..........
T Consensus 132 ~--~--~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~ 207 (481)
T TIGR01649 132 N--N--VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQ 207 (481)
T ss_pred C--C--ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccc
Confidence 3 2 4689999999999999999999999954 58999988753210 000 000000000000
Q ss_pred HHHHHHHh------hhcCcccc-----------------------C-----CCCC-------ccCCccceEEEEeccCCc
Q 016936 251 IAIQKMAL------QTSGMNTL-----------------------G-----GGMS-------LFGETLAKVLCLTEAITA 289 (380)
Q Consensus 251 ~~~~~~~~------~~~~~~~~-----------------------~-----~~~~-------~~~~~~~~~~~l~~~~~~ 289 (380)
....... ...+.+.. . ...+ .....+..++.+.|....
T Consensus 208 -~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~ 286 (481)
T TIGR01649 208 -RQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQE 286 (481)
T ss_pred -cccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCC
Confidence 0000000 00000000 0 0000 001234557777775321
Q ss_pred ccCCChHHHHHHHHHHHHhhcccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCCeEEEEEecc
Q 016936 290 DALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYP 369 (380)
Q Consensus 290 ~~~~~~~~~~~~~~~L~~~f~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~~ 369 (380)
. .++++|+++|++||.|.+|+++++.+ |+|||+|.+.++|.+|++.|||..|.|++|+|+++.
T Consensus 287 ~---------vt~~~L~~lF~~yG~V~~vki~~~~~--------g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~ 349 (481)
T TIGR01649 287 K---------VNCDRLFNLFCVYGNVERVKFMKNKK--------ETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSK 349 (481)
T ss_pred C---------CCHHHHHHHHHhcCCeEEEEEEeCCC--------CEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 0 12269999999999999999988642 578999999999999999999999999999999985
Q ss_pred cc
Q 016936 370 ED 371 (380)
Q Consensus 370 ~~ 371 (380)
.+
T Consensus 350 ~~ 351 (481)
T TIGR01649 350 QQ 351 (481)
T ss_pred cc
Confidence 54
No 11
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.4e-35 Score=265.64 Aligned_cols=246 Identities=19% Similarity=0.318 Sum_probs=208.0
Q ss_pred cccchhhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEe------cCCCcEEEEEeCCHHHHHH
Q 016936 22 QVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASN 95 (380)
Q Consensus 22 ~~~~~~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~------~~~~g~afV~f~~~~~a~~ 95 (380)
+.+........|.|||+.||.++.|+||.-+|.+.|. |.++++ +.++|||||.|.+.++|++
T Consensus 73 P~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~------------I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~ 140 (506)
T KOG0117|consen 73 PGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGK------------IYELRLMMDPFSGDNRGYAFVTFCTKEEAQE 140 (506)
T ss_pred CcccCCCCCCCceEEecCCCccccchhhHHHHHhccc------------eeeEEEeecccCCCCcceEEEEeecHHHHHH
Confidence 3477777799999999999999999999999999998 555555 3568999999999999999
Q ss_pred HH-HcCCceec-CceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHH
Q 016936 96 AM-ALDGIIFE-GVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELL 173 (380)
Q Consensus 96 ai-~l~~~~i~-g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F 173 (380)
|+ .||+..|+ |+.|.|..+.. .++|||+|+|+.+++++|++.+
T Consensus 141 Aik~lnn~Eir~GK~igvc~Sva-----------------------------------n~RLFiG~IPK~k~keeIlee~ 185 (506)
T KOG0117|consen 141 AIKELNNYEIRPGKLLGVCVSVA-----------------------------------NCRLFIGNIPKTKKKEEILEEM 185 (506)
T ss_pred HHHHhhCccccCCCEeEEEEeee-----------------------------------cceeEeccCCccccHHHHHHHH
Confidence 99 79998875 68898876332 2699999999999999999999
Q ss_pred HhcCC-eeEEEEeeCCC-CCCCceEEEEEEcChhHHHHHHHHhC-C-CeeCCeEEEEEEcccCCCCChhHHHHHHHHHHH
Q 016936 174 ESFGT-LHGFDLVKDRD-TGNSKGYGFCVYQDPAVTDIACAALN-G-LKMGDKTLTVRRATASSGQSKTEQESILAQAQQ 249 (380)
Q Consensus 174 ~~~G~-i~~v~l~~~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~-g-~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~ 249 (380)
++.++ |..|.+...++ ..+++|||||+|.++..|..|..+|- + ..+.|..+.|.||.+........
T Consensus 186 ~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~---------- 255 (506)
T KOG0117|consen 186 KKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDT---------- 255 (506)
T ss_pred HhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhh----------
Confidence 99987 77777777654 46899999999999999999999874 3 58899999999998764332210
Q ss_pred HHHHHHHHhhhcCccccCCCCCccCCccceEEEEeccCCcccCCChHHHHHHHHHHHHhhcccCCeEEEEecCCCCCCCC
Q 016936 250 HIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGE 329 (380)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~f~~~G~I~~v~i~~~~~~~~~ 329 (380)
-...+++.+.|+ ...+|++.|+++|++||.|++|+.+++
T Consensus 256 -------------------------ms~VKvLYVRNL----------~~~tTeE~lk~~F~~~G~veRVkk~rD------ 294 (506)
T KOG0117|consen 256 -------------------------MSKVKVLYVRNL----------MESTTEETLKKLFNEFGKVERVKKPRD------ 294 (506)
T ss_pred -------------------------hhheeeeeeecc----------chhhhHHHHHHHHHhccceEEeecccc------
Confidence 234567777773 334456899999999999999999864
Q ss_pred CCCccEEEEEeechhhHHHHHHHHcCcccCCeEEEEEeccc
Q 016936 330 TPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPE 370 (380)
Q Consensus 330 ~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~~~ 370 (380)
+|||.|.+.++|.+|++.|||+.|+|..|.|.+|.+
T Consensus 295 -----YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP 330 (506)
T KOG0117|consen 295 -----YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKP 330 (506)
T ss_pred -----eeEEeecchHHHHHHHHHhcCceecCceEEEEecCC
Confidence 779999999999999999999999999999999987
No 12
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=5.4e-35 Score=246.02 Aligned_cols=293 Identities=18% Similarity=0.276 Sum_probs=215.4
Q ss_pred cccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceecCce
Q 016936 30 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 108 (380)
Q Consensus 30 ~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~g~~ 108 (380)
...+.|-|--||..+|+++++.+|...|.|..++ .|.+...+.+.||+||.|.+++||++|+ .+||..+..+.
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScK------LvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KT 112 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCK------LVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKT 112 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeee------eeeccccccccccceeeecChHHHHHHHhhhcceeeccce
Confidence 3445589999999999999999999999954432 2344445667899999999999999999 89999999999
Q ss_pred EEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC
Q 016936 109 VRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDR 188 (380)
Q Consensus 109 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~ 188 (380)
|+|.++...... -...+|||.+||+..|..+|..+|++||.|..-+++.|.
T Consensus 113 IKVSyARPSs~~-----------------------------Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dq 163 (360)
T KOG0145|consen 113 IKVSYARPSSDS-----------------------------IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQ 163 (360)
T ss_pred EEEEeccCChhh-----------------------------hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhc
Confidence 999986553211 122589999999999999999999999999988999998
Q ss_pred CCCCCceEEEEEEcChhHHHHHHHHhCCCeeCC--eEEEEEEcccCCCCChhHH--HHH-----------HHHHHHHHHH
Q 016936 189 DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD--KTLTVRRATASSGQSKTEQ--ESI-----------LAQAQQHIAI 253 (380)
Q Consensus 189 ~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g--~~i~v~~~~~~~~~~~~~~--~~~-----------~~~~~~~~~~ 253 (380)
.+|.++|.+||+|....+|+.||..|||..-.| .+|.|+++..........- .-. ..+.++ ..+
T Consensus 164 vtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r-~r~ 242 (360)
T KOG0145|consen 164 VTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQR-FRL 242 (360)
T ss_pred ccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhh-hcc
Confidence 899999999999999999999999999987755 4799998865432111000 000 000000 000
Q ss_pred HHH------HhhhcCccccC------CCCCccCCccceEEEEeccCCcccCCChHHHHHHHHHHHHhhcccCCeEEEEec
Q 016936 254 QKM------ALQTSGMNTLG------GGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIP 321 (380)
Q Consensus 254 ~~~------~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~f~~~G~I~~v~i~ 321 (380)
..+ ....+.+...+ ...+. ......|+.+-|.....+. .-|.++|++||.|..|+++
T Consensus 243 ~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~-~~~~g~ciFvYNLspd~de----------~~LWQlFgpFGAv~nVKvi 311 (360)
T KOG0145|consen 243 DNLLNPHAAQARFSPMTIDGMSGLAGVNLPG-GPGGGWCIFVYNLSPDADE----------SILWQLFGPFGAVTNVKVI 311 (360)
T ss_pred ccccchhhhhccCCCccccccceeeeeccCC-CCCCeeEEEEEecCCCchH----------hHHHHHhCcccceeeEEEE
Confidence 000 00111111111 11111 2233567766664333221 4799999999999999999
Q ss_pred CCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCCeEEEEEeccccc
Q 016936 322 RPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDK 372 (380)
Q Consensus 322 ~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~~~~~ 372 (380)
++..+ .+|.|++||.+.+.++|..|+..|||+.+++|.|.|+|.+.+.
T Consensus 312 rD~tt---nkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk~ 359 (360)
T KOG0145|consen 312 RDFTT---NKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKA 359 (360)
T ss_pred ecCCc---ccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCCC
Confidence 98754 3455666999999999999999999999999999999987654
No 13
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.9e-34 Score=257.47 Aligned_cols=172 Identities=24% Similarity=0.390 Sum_probs=145.0
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCce-e
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGII-F 104 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~-i 104 (380)
.++.+.-++||+-||..|+|.||+++|.+||.+.+. .++.|..++.++|||||.|.+.++|.+|+ +||++. |
T Consensus 29 ~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~ei------nl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktl 102 (510)
T KOG0144|consen 29 NPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEI------NLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTL 102 (510)
T ss_pred CCCchhhhheeccCCccccHHHHHHHHHHhCceeEE------EeecccccCcccceEEEEeccHHHHHHHHHHhhccccc
Confidence 456777889999999999999999999999985442 23445555677899999999999999999 898865 6
Q ss_pred cC--ceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEE
Q 016936 105 EG--VAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGF 182 (380)
Q Consensus 105 ~g--~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v 182 (380)
-| .+|+|.++.....+. ...++|||+.|++.+++.+++++|++||.|++|
T Consensus 103 pG~~~pvqvk~Ad~E~er~----------------------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~ 154 (510)
T KOG0144|consen 103 PGMHHPVQVKYADGERERI----------------------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDC 154 (510)
T ss_pred CCCCcceeecccchhhhcc----------------------------ccchhhhhhhccccccHHHHHHHHHhhCccchh
Confidence 56 789999865432221 122689999999999999999999999999999
Q ss_pred EEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCC-eeCC--eEEEEEEcccCC
Q 016936 183 DLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGL-KMGD--KTLTVRRATASS 233 (380)
Q Consensus 183 ~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~-~~~g--~~i~v~~~~~~~ 233 (380)
.|++|+ .+.+||||||.|.+.+.|..||+.|||. .+.| .+|.|+|+.+..
T Consensus 155 ~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqk 207 (510)
T KOG0144|consen 155 YILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQK 207 (510)
T ss_pred hheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCC
Confidence 999996 5999999999999999999999999985 5555 579999998865
No 14
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=3.5e-34 Score=251.73 Aligned_cols=324 Identities=27% Similarity=0.424 Sum_probs=236.5
Q ss_pred hhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceecC
Q 016936 28 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 106 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~g 106 (380)
+-.-.|+|||+.|.+++.|+.|+..|..||+|...+- --+-.+.++||||||+|.-+|.|+.|+ .+|+..+.|
T Consensus 109 ALaiMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInM------SWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGG 182 (544)
T KOG0124|consen 109 ALAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINM------SWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGG 182 (544)
T ss_pred HHHHhHheeeeeeEEEechHHHHhhccCCCCcceeec------ccccccccccceEEEEEeCcHHHHHHHHHhccccccC
Confidence 3456799999999999999999999999998543210 001124678999999999999999999 799999999
Q ss_pred ceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEee
Q 016936 107 VAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVK 186 (380)
Q Consensus 107 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~ 186 (380)
|.|+|.++.+- .+.++...... .++..-.+|||..+..+++++||+..|+.||+|..|.+-+
T Consensus 183 RNiKVgrPsNm----------pQAQpiID~vq--------eeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr 244 (544)
T KOG0124|consen 183 RNIKVGRPSNM----------PQAQPIIDMVQ--------EEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLAR 244 (544)
T ss_pred ccccccCCCCC----------cccchHHHHHH--------HHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeec
Confidence 99999876542 11111111100 1123346999999999999999999999999999999999
Q ss_pred CCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccCCCC---C-----hhHHHHHHHHHH--HHHHHHHH
Q 016936 187 DRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQ---S-----KTEQESILAQAQ--QHIAIQKM 256 (380)
Q Consensus 187 ~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~~~~---~-----~~~~~~~~~~~~--~~~~~~~~ 256 (380)
++..+.++||+|++|.+..+-..|+..||=+.++|.-++|..+...... + .+........+- +.......
T Consensus 245 ~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAv 324 (544)
T KOG0124|consen 245 APTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAV 324 (544)
T ss_pred cCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHh
Confidence 9988899999999999999999999999999999999999986554311 0 000000000000 00000000
Q ss_pred Hhhh----------------------------------------------------------------------------
Q 016936 257 ALQT---------------------------------------------------------------------------- 260 (380)
Q Consensus 257 ~~~~---------------------------------------------------------------------------- 260 (380)
+...
T Consensus 325 Ag~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeK 404 (544)
T KOG0124|consen 325 AGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEK 404 (544)
T ss_pred ccCCcccccCCccccCccccccCCCCCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhh
Confidence 0000
Q ss_pred ------------------cCccccCCC------CCccCCccceEEEEeccCCcccCCChHHHHHHHHHHHHhhcccCCeE
Q 016936 261 ------------------SGMNTLGGG------MSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLV 316 (380)
Q Consensus 261 ------------------~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~f~~~G~I~ 316 (380)
.++...|.. .-......+++++|.|+++++++.++.+ .+|++.|++||.|.
T Consensus 405 e~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~Le-----gEi~EECgKfG~V~ 479 (544)
T KOG0124|consen 405 EEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLE-----GEITEECGKFGAVN 479 (544)
T ss_pred hHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhccccCcEEEEeccCChhhhhhHHH-----HHHHHHHhccccee
Confidence 000000000 0001456688999999999998766554 68999999999999
Q ss_pred EEEecCCCCCCCCCCC-ccEEEEEeechhhHHHHHHHHcCcccCCeEEEEEeccccccccccCCC
Q 016936 317 NVVIPRPDQNGGETPG-VGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFNKDYSA 380 (380)
Q Consensus 317 ~v~i~~~~~~~~~~~g-~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~~~~~~~~~~~~~ 380 (380)
+|.|.....++...-. .-..||+|+...++.+|.++|+|++|+||++..+.++-..|.+++|++
T Consensus 480 rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~VvAE~YDQ~~FD~~Dlsg 544 (544)
T KOG0124|consen 480 RVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRKVVAEVYDQERFDNSDLSG 544 (544)
T ss_pred EEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceecCceeehhhhhhhcccccccCC
Confidence 9999876654421000 123699999999999999999999999999999999999999999986
No 15
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.7e-34 Score=239.94 Aligned_cols=236 Identities=23% Similarity=0.394 Sum_probs=182.6
Q ss_pred hcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHHHcCCceecCce
Q 016936 29 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVA 108 (380)
Q Consensus 29 ~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai~l~~~~i~g~~ 108 (380)
+.+.|||||+||+.++||+-|..+|++.|. |..+++. |+ .
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~------------v~~~k~i---------~~-------------------e 42 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGS------------VTKTKVI---------FD-------------------E 42 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccc------------cccceee---------hh-------------------h
Confidence 467899999999999999999999999998 5554433 22 6
Q ss_pred EEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC
Q 016936 109 VRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDR 188 (380)
Q Consensus 109 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~ 188 (380)
|+|.|+..... +..+ .....-.|||+.|...++-++|++.|.+||.|.++++++|.
T Consensus 43 ~~v~wa~~p~n---------Qsk~---------------t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~ 98 (321)
T KOG0148|consen 43 LKVNWATAPGN---------QSKP---------------TSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDM 98 (321)
T ss_pred hccccccCccc---------CCCC---------------ccccceeEEehhcchhcchHHHHHHhccccccccceEeecc
Confidence 67777544210 0000 11223589999999999999999999999999999999999
Q ss_pred CCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhcCccccCC
Q 016936 189 DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGG 268 (380)
Q Consensus 189 ~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (380)
.+++++|||||.|.+.++|++||..|||.=|++|.|+-.|+..+........ ........+.
T Consensus 99 ~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~~----------ltfdeV~NQs-------- 160 (321)
T KOG0148|consen 99 NTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNGKP----------LTFDEVYNQS-------- 160 (321)
T ss_pred cCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCccccCCCC----------ccHHHHhccC--------
Confidence 9999999999999999999999999999999999999999976541110000 0011111111
Q ss_pred CCCccCCccceEEEEeccCC-cccCCChHHHHHHHHHHHHhhcccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHH
Q 016936 269 GMSLFGETLAKVLCLTEAIT-ADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCA 347 (380)
Q Consensus 269 ~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~L~~~f~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~ 347 (380)
...++.++ +.++.. +.+ ++|++.|++||.|.+|+++++. |+|||+|.+.|.|.
T Consensus 161 -----sp~NtsVY-~G~I~~~lte-----------~~mr~~Fs~fG~I~EVRvFk~q---------GYaFVrF~tkEaAa 214 (321)
T KOG0148|consen 161 -----SPDNTSVY-VGNIASGLTE-----------DLMRQTFSPFGPIQEVRVFKDQ---------GYAFVRFETKEAAA 214 (321)
T ss_pred -----CCCCceEE-eCCcCccccH-----------HHHHHhcccCCcceEEEEeccc---------ceEEEEecchhhHH
Confidence 13333333 344333 322 5899999999999999999875 69999999999999
Q ss_pred HHHHHHcCcccCCeEEEEEeccccc
Q 016936 348 TAKNALSGRKFGGNTVNAFYYPEDK 372 (380)
Q Consensus 348 ~A~~~l~g~~i~gr~l~v~~~~~~~ 372 (380)
+||..|||..|+|+.++++|-.+..
T Consensus 215 hAIv~mNntei~G~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 215 HAIVQMNNTEIGGQLVRCSWGKEGD 239 (321)
T ss_pred HHHHHhcCceeCceEEEEeccccCC
Confidence 9999999999999999999988743
No 16
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=3e-32 Score=266.46 Aligned_cols=303 Identities=17% Similarity=0.182 Sum_probs=201.2
Q ss_pred cceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCC--CcEEEEEeCCHHHHHHHH-HcCCceecC--
Q 016936 32 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE--KKFAFVEMRTVEEASNAM-ALDGIIFEG-- 106 (380)
Q Consensus 32 ~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~--~g~afV~f~~~~~a~~ai-~l~~~~i~g-- 106 (380)
..+|||+||++.+|+++|+++|+.||. |..+.+.+. .++|||+|.+.++|.+|+ .|||..|.+
T Consensus 96 ~~~v~v~nl~~~vt~~~L~~~F~~~G~------------V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~~ 163 (481)
T TIGR01649 96 VLRVIVENPMYPITLDVLYQIFNPYGK------------VLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYNGC 163 (481)
T ss_pred eEEEEEcCCCCCCCHHHHHHHHhccCC------------EEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccCCc
Confidence 347999999999999999999999998 555555433 369999999999999999 799999975
Q ss_pred ceEEEecCCCCCccc------ccc-----C-CCCCCCCC----cccc-------------c----------------cc-
Q 016936 107 VAVRVRRPTDYNPTL------AAA-----L-GPGQPSPN----LNLA-------------A----------------VG- 140 (380)
Q Consensus 107 ~~i~v~~~~~~~~~~------~~~-----~-~~~~~~~~----~~~~-------------~----------------~~- 140 (380)
..|+|.|+....... ... . +....... .... . .+
T Consensus 164 ~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 243 (481)
T TIGR01649 164 CTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGP 243 (481)
T ss_pred eEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCC
Confidence 578888876433211 000 0 00000000 0000 0 00
Q ss_pred ---CCC---------C--------CCCCCCCCCEEEEcCCCC-CCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEE
Q 016936 141 ---LAS---------G--------AIGGAEGPDRVFVGGLPY-YFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 199 (380)
Q Consensus 141 ---~~~---------~--------~~~~~~~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV 199 (380)
.+. . .........+|||+|||+ .+++++|+++|+.||.|.+|++++++ +|+|||
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV 318 (481)
T TIGR01649 244 PHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALI 318 (481)
T ss_pred cccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEE
Confidence 000 0 000112446999999997 69999999999999999999998763 589999
Q ss_pred EEcChhHHHHHHHHhCCCeeCCeEEEEEEcccCCCCChhHHH-HHHHHHHHHHHHHHHHhhhcCccccCCCCCccCCccc
Q 016936 200 VYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQE-SILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLA 278 (380)
Q Consensus 200 ~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (380)
+|.+.++|+.|+..|||..+.|++|+|.++............ .......+... .........+..........++
T Consensus 319 ~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~----~~~~~r~~~~~~~~~~~~~~ps 394 (481)
T TIGR01649 319 EMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYS----SSRNHRFKKPGSANKNNIQPPS 394 (481)
T ss_pred EECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCccccccc----CCccccCCCcccccccccCCCC
Confidence 999999999999999999999999999997654322111000 00000000000 0000000000000000112355
Q ss_pred eEEEEeccCCcccCCChHHHHHHHHHHHHhhcccCC--eEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCc
Q 016936 279 KVLCLTEAITADALADDEEYEEILEDMREECGKYGT--LVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGR 356 (380)
Q Consensus 279 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~f~~~G~--I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~ 356 (380)
..+.+.|.... .+.++|+++|+.||. |..+++.+... + .+ |+|||+|.+.++|.+|+..|||+
T Consensus 395 ~~L~v~NLp~~----------~tee~L~~lF~~~G~~~i~~ik~~~~~~-~--~~--~~gfVeF~~~e~A~~Al~~ln~~ 459 (481)
T TIGR01649 395 ATLHLSNIPLS----------VSEEDLKELFAENGVHKVKKFKFFPKDN-E--RS--KMGLLEWESVEDAVEALIALNHH 459 (481)
T ss_pred cEEEEecCCCC----------CCHHHHHHHHHhcCCccceEEEEecCCC-C--cc--eeEEEEcCCHHHHHHHHHHhcCC
Confidence 67777774321 112699999999998 88888876442 2 23 46699999999999999999999
Q ss_pred ccCCeE------EEEEeccc
Q 016936 357 KFGGNT------VNAFYYPE 370 (380)
Q Consensus 357 ~i~gr~------l~v~~~~~ 370 (380)
.|+|+. |+|+|+..
T Consensus 460 ~l~~~~~~~~~~lkv~fs~~ 479 (481)
T TIGR01649 460 QLNEPNGSAPYHLKVSFSTS 479 (481)
T ss_pred ccCCCCCCccceEEEEeccC
Confidence 999985 99999864
No 17
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.5e-32 Score=253.01 Aligned_cols=326 Identities=16% Similarity=0.230 Sum_probs=219.0
Q ss_pred cceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceecCceEE
Q 016936 32 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVR 110 (380)
Q Consensus 32 ~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~g~~i~ 110 (380)
..||||++||++++.++|.++|+.+|+|..+.. |..--...++||+||.|.-.+|++.|+ .+++..+.|+.|+
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~v------Vt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~ 78 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVV------VTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILN 78 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEE------ecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecc
Confidence 379999999999999999999999999754310 111112346899999999999999999 7999999999999
Q ss_pred EecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC
Q 016936 111 VRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 190 (380)
Q Consensus 111 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~ 190 (380)
|..+..+..+...+.+........ .......-........+|.|+|||+.+...+|+.+|+.||.|.++.|++.++
T Consensus 79 v~~A~~R~r~e~~~~~e~~~veK~---~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d- 154 (678)
T KOG0127|consen 79 VDPAKKRARSEEVEKGENKAVEKP---IEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD- 154 (678)
T ss_pred cccccccccchhcccccchhhhcc---cccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-
Confidence 998766544432111111000000 0000000000111246899999999999999999999999999999998875
Q ss_pred CCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhcCcc----cc
Q 016936 191 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMN----TL 266 (380)
Q Consensus 191 ~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 266 (380)
|+-.|||||+|....+|..|++.+|+..|.||+|-|.||.++..........-..-.....-............ -.
T Consensus 155 gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed 234 (678)
T KOG0127|consen 155 GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEED 234 (678)
T ss_pred CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhc
Confidence 66669999999999999999999999999999999999998876554332110000000000000000000000 00
Q ss_pred C---------------------C------CCC----ccCCccceEEEE---ecc--CCcccCCChHHHHHHHHHHHHhhc
Q 016936 267 G---------------------G------GMS----LFGETLAKVLCL---TEA--ITADALADDEEYEEILEDMREECG 310 (380)
Q Consensus 267 ~---------------------~------~~~----~~~~~~~~~~~l---~~~--~~~~~~~~~~~~~~~~~~L~~~f~ 310 (380)
+ . ... +......+-... ... .....++.|.+|.++++.|.++|+
T Consensus 235 ~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fs 314 (678)
T KOG0127|consen 235 GEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFS 314 (678)
T ss_pred ccccccccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHH
Confidence 0 0 000 000000000011 111 112224557788888899999999
Q ss_pred ccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHH-----cC-cccCCeEEEEEeccc
Q 016936 311 KYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNAL-----SG-RKFGGNTVNAFYYPE 370 (380)
Q Consensus 311 ~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l-----~g-~~i~gr~l~v~~~~~ 370 (380)
+||.|.++.++.++.+++ + .|+|||.|.+..+|+.||... .| ..|.||.|+|..+-.
T Consensus 315 kFG~v~ya~iV~~k~T~~-s--kGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~ 377 (678)
T KOG0127|consen 315 KFGEVKYAIIVKDKDTGH-S--KGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVT 377 (678)
T ss_pred hhccceeEEEEeccCCCC-c--ccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccc
Confidence 999999999999988776 3 467799999999999999876 34 679999999998743
No 18
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=9.1e-30 Score=237.09 Aligned_cols=243 Identities=19% Similarity=0.351 Sum_probs=195.3
Q ss_pred ceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceecCceEEE
Q 016936 33 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRV 111 (380)
Q Consensus 33 ~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~g~~i~v 111 (380)
..|||+ +++|+..|++.|+.+|+++.. ..+.+. .+.|||||.|.++++|++|| ++|...+.|++|+|
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~------rvc~d~---tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~ri 69 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSI------RVCRDA---TSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRI 69 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeE------EEeecC---CccceEEEecCCHHHHHHHHHHcCCcccCCcEEEe
Confidence 368998 899999999999999996541 122333 28899999999999999999 89999999999999
Q ss_pred ecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCC
Q 016936 112 RRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTG 191 (380)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~ 191 (380)
+|+... + ..|||.||+.+++..+|++.|+.||.|.+|++..+. .|
T Consensus 70 m~s~rd--------------~--------------------~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g 114 (369)
T KOG0123|consen 70 MWSQRD--------------P--------------------SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG 114 (369)
T ss_pred ehhccC--------------C--------------------ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC
Confidence 995321 1 239999999999999999999999999999999995 35
Q ss_pred CCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhcCccccCCCCC
Q 016936 192 NSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMS 271 (380)
Q Consensus 192 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (380)
++|| ||+|.+++.|++|+..+||..+.+.+|.|.....+.....+... ..
T Consensus 115 -~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~-~~--------------------------- 164 (369)
T KOG0123|consen 115 -SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGE-YK--------------------------- 164 (369)
T ss_pred -ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccc-hh---------------------------
Confidence 9999 99999999999999999999999999999988655333222211 00
Q ss_pred ccCCccceEEEEeccCCcccCCChHHHHHHHHHHHHhhcccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHH
Q 016936 272 LFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKN 351 (380)
Q Consensus 272 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~f~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~ 351 (380)
..-+.+++.....+.++ ..|.+.|+.||.|.++.++++.... ++|+| ||.|.++++|..|++
T Consensus 165 ---~~~t~v~vk~~~~~~~~-----------~~l~~~f~~~g~i~s~~v~~~~~g~--~~~~g--fv~f~~~e~a~~av~ 226 (369)
T KOG0123|consen 165 ---KRFTNVYVKNLEEDSTD-----------EELKDLFSAYGSITSVAVMRDSIGK--SKGFG--FVNFENPEDAKKAVE 226 (369)
T ss_pred ---hhhhhhheeccccccch-----------HHHHHhhcccCcceEEEEeecCCCC--CCCcc--ceeecChhHHHHHHH
Confidence 11122222222222221 5899999999999999999877433 45555 999999999999999
Q ss_pred HHcCcccCCeEEEEEeccc
Q 016936 352 ALSGRKFGGNTVNAFYYPE 370 (380)
Q Consensus 352 ~l~g~~i~gr~l~v~~~~~ 370 (380)
.|||..+++..+.|.-+..
T Consensus 227 ~l~~~~~~~~~~~V~~aqk 245 (369)
T KOG0123|consen 227 TLNGKIFGDKELYVGRAQK 245 (369)
T ss_pred hccCCcCCccceeeccccc
Confidence 9999999999999987765
No 19
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=6.6e-30 Score=236.90 Aligned_cols=171 Identities=19% Similarity=0.308 Sum_probs=144.6
Q ss_pred hhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceecC
Q 016936 28 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 106 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~g 106 (380)
.....++|||+|||+++|+++|+++|+.||.|... .++.+..+.+++|||||+|.+.++|++|+ .|++..+.+
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v------~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~g 176 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTC------RIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRN 176 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEE------EEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCC
Confidence 44578899999999999999999999999984321 11112223457799999999999999999 799999999
Q ss_pred ceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEee
Q 016936 107 VAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVK 186 (380)
Q Consensus 107 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~ 186 (380)
++|+|.++..... ....++|||+|||..+++++|+++|++||.|..|++++
T Consensus 177 r~i~V~~a~p~~~-----------------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~ 227 (346)
T TIGR01659 177 KRLKVSYARPGGE-----------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILR 227 (346)
T ss_pred ceeeeeccccccc-----------------------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEee
Confidence 9999998643210 01125899999999999999999999999999999999
Q ss_pred CCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCC--eEEEEEEcccCC
Q 016936 187 DRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD--KTLTVRRATASS 233 (380)
Q Consensus 187 ~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g--~~i~v~~~~~~~ 233 (380)
++.+++++|||||+|.+.++|++|++.||+..+.+ ++|+|.++....
T Consensus 228 d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 228 DKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred cCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCccc
Confidence 98899999999999999999999999999998865 789999987653
No 20
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=8.3e-29 Score=230.65 Aligned_cols=287 Identities=21% Similarity=0.352 Sum_probs=217.9
Q ss_pred CCCCCCCCccccchhhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec----CCCcEEEEEeC
Q 016936 13 LGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN----HEKKFAFVEMR 88 (380)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~----~~~g~afV~f~ 88 (380)
+..+..+|+..|..+++... |||+||+++++.++|+++|+.||. |+++++- -++|| ||.|.
T Consensus 59 ~~~~~~~~~rim~s~rd~~~--~~i~nl~~~~~~~~~~d~f~~~g~------------ilS~kv~~~~~g~kg~-FV~f~ 123 (369)
T KOG0123|consen 59 FDVLKGKPIRIMWSQRDPSL--VFIKNLDESIDNKSLYDTFSEFGN------------ILSCKVATDENGSKGY-FVQFE 123 (369)
T ss_pred CcccCCcEEEeehhccCCce--eeecCCCcccCcHHHHHHHHhhcC------------eeEEEEEEcCCCceee-EEEeC
Confidence 34556677776665544444 999999999999999999999999 5555542 37899 99999
Q ss_pred CHHHHHHHH-HcCCceecCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHH
Q 016936 89 TVEEASNAM-ALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTET 167 (380)
Q Consensus 89 ~~~~a~~ai-~l~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~ 167 (380)
+.++|.+|+ .+||+.+.+++|.|......+........ ....-..+++.+++.+.+.+
T Consensus 124 ~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~---------------------~~~~~t~v~vk~~~~~~~~~ 182 (369)
T KOG0123|consen 124 SEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGE---------------------YKKRFTNVYVKNLEEDSTDE 182 (369)
T ss_pred CHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccc---------------------hhhhhhhhheeccccccchH
Confidence 999999999 89999999999999876655433221111 01122479999999999999
Q ss_pred HHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccCCCCChhHHHHHHHHH
Q 016936 168 QIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQA 247 (380)
Q Consensus 168 ~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~ 247 (380)
.|.+.|..+|.|..+.++.+. .+.++||+||.|.+.+.|..|+..+++..+.+..+.|..+.. ..++.......
T Consensus 183 ~l~~~f~~~g~i~s~~v~~~~-~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqk-----k~e~~~~l~~~ 256 (369)
T KOG0123|consen 183 ELKDLFSAYGSITSVAVMRDS-IGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQK-----KSEREAELKRK 256 (369)
T ss_pred HHHHhhcccCcceEEEEeecC-CCCCCCccceeecChhHHHHHHHhccCCcCCccceeeccccc-----chhhHHHHhhh
Confidence 999999999999999999985 577999999999999999999999999999999999998853 33333333332
Q ss_pred HHHHHHHHHHhhhcCccccCCCCCccCCccceEEEEeccCCcccCCChHHHHHHHHHHHHhhcccCCeEEEEecCCCCCC
Q 016936 248 QQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNG 327 (380)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~f~~~G~I~~v~i~~~~~~~ 327 (380)
......++.. ......+.+.| .+.... .+.|++.|+.||+|.++.++.+...
T Consensus 257 ~~~~~~~~~~-----------------~~~~~nl~vkn---ld~~~~-------~e~L~~~f~~~GeI~s~kv~~~~~g- 308 (369)
T KOG0123|consen 257 FEQEFAKRSV-----------------SLQGANLYVKN---LDETLS-------DEKLRKIFSSFGEITSAKVMVDENG- 308 (369)
T ss_pred hHhhhhhccc-----------------ccccccccccc---Cccccc-------hhHHHHHHhcccceeeEEEEeccCC-
Confidence 2222222110 11122233333 111111 1589999999999999999887642
Q ss_pred CCCCCccEEEEEeechhhHHHHHHHHcCcccCCeEEEEEeccccc
Q 016936 328 GETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDK 372 (380)
Q Consensus 328 ~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~~~~~ 372 (380)
+..|++||+|++.++|.+|+..+||+.++++.|.|.++....
T Consensus 309 ---~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~ 350 (369)
T KOG0123|consen 309 ---KSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKE 350 (369)
T ss_pred ---CccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhc
Confidence 334666999999999999999999999999999999887543
No 21
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.95 E-value=5.1e-27 Score=217.69 Aligned_cols=172 Identities=23% Similarity=0.307 Sum_probs=143.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEE
Q 016936 148 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 227 (380)
Q Consensus 148 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~ 227 (380)
.....++|||+|||+++++++|+++|+.||.|..|+|++++.+++++|||||+|.++++|++|++.|++..+.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 34556899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhcCccccCCCCCccCCccceEEEEeccCCcccCCChHHHHHHHHHHHH
Q 016936 228 RATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMRE 307 (380)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~ 307 (380)
++.+... ......+.+.|+. +..++++|++
T Consensus 183 ~a~p~~~----------------------------------------~~~~~~lfV~nLp----------~~vtee~L~~ 212 (346)
T TIGR01659 183 YARPGGE----------------------------------------SIKDTNLYVTNLP----------RTITDDQLDT 212 (346)
T ss_pred ccccccc----------------------------------------ccccceeEEeCCC----------CcccHHHHHH
Confidence 8753210 1111234444421 1223379999
Q ss_pred hhcccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCC--eEEEEEeccccc
Q 016936 308 ECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGG--NTVNAFYYPEDK 372 (380)
Q Consensus 308 ~f~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~g--r~l~v~~~~~~~ 372 (380)
+|++||.|+.+.++++..++. + .|+|||+|.+.++|++|++.||+..+.| +.|+|.++.+..
T Consensus 213 ~F~~fG~V~~v~i~~d~~tg~-~--kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 213 IFGKYGQIVQKNILRDKLTGT-P--RGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred HHHhcCCEEEEEEeecCCCCc-c--ceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCccc
Confidence 999999999999998776554 3 3677999999999999999999999866 799999998754
No 22
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.95 E-value=1e-26 Score=220.11 Aligned_cols=192 Identities=22% Similarity=0.349 Sum_probs=145.0
Q ss_pred hcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEe------cCCCcEEEEEeCCHHHHHHHH-HcCC
Q 016936 29 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASNAM-ALDG 101 (380)
Q Consensus 29 ~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~------~~~~g~afV~f~~~~~a~~ai-~l~~ 101 (380)
....++|||+|||..+++++|+++|++||.+ ..+.+ ..++|||||+|.+.++|+.|+ .|++
T Consensus 86 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i------------~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g 153 (352)
T TIGR01661 86 SIKGANLYVSGLPKTMTQHELESIFSPFGQI------------ITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNG 153 (352)
T ss_pred ccccceEEECCccccCCHHHHHHHHhccCCE------------EEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCC
Confidence 3456789999999999999999999999984 33332 346899999999999999999 8999
Q ss_pred ceecC--ceEEEecCCCCCccccccCCC--------CCCCCCcc------------------------------------
Q 016936 102 IIFEG--VAVRVRRPTDYNPTLAAALGP--------GQPSPNLN------------------------------------ 135 (380)
Q Consensus 102 ~~i~g--~~i~v~~~~~~~~~~~~~~~~--------~~~~~~~~------------------------------------ 135 (380)
..+.| .+|.+.++............. ........
T Consensus 154 ~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (352)
T TIGR01661 154 TTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQH 233 (352)
T ss_pred CccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhc
Confidence 98887 678888765432111000000 00000000
Q ss_pred -----------------cc--cccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceE
Q 016936 136 -----------------LA--AVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGY 196 (380)
Q Consensus 136 -----------------~~--~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~ 196 (380)
.. ................+|||+|||+++++++|+++|++||.|.++++++++.++.++||
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~ 313 (352)
T TIGR01661 234 AVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGY 313 (352)
T ss_pred ccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccce
Confidence 00 00000001111233457999999999999999999999999999999999889999999
Q ss_pred EEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 016936 197 GFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 232 (380)
Q Consensus 197 afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~ 232 (380)
|||+|.+.++|.+|++.|||..+.|++|+|.|+..+
T Consensus 314 aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~ 349 (352)
T TIGR01661 314 GFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNK 349 (352)
T ss_pred EEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCC
Confidence 999999999999999999999999999999998765
No 23
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=7.2e-27 Score=198.30 Aligned_cols=185 Identities=18% Similarity=0.343 Sum_probs=154.9
Q ss_pred hcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceecCc
Q 016936 29 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 107 (380)
Q Consensus 29 ~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~g~ 107 (380)
....-.|||+.|..+++.++|++.|..||.|+++ .+|.+..+.++|||+||.|.+.++|+.|| .|+|.=|.+|
T Consensus 59 ~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~a------kvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R 132 (321)
T KOG0148|consen 59 SNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDA------KVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRR 132 (321)
T ss_pred cccceeEEehhcchhcchHHHHHHhccccccccc------eEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccc
Confidence 3445679999999999999999999999999775 46888899999999999999999999999 8999999999
Q ss_pred eEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeC
Q 016936 108 AVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKD 187 (380)
Q Consensus 108 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~ 187 (380)
.|+-.|+..+........ +.....= ...+...++|||+|++..+++++|++.|++||+|.+|++.++
T Consensus 133 ~IRTNWATRKp~e~n~~~--------ltfdeV~-----NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~ 199 (321)
T KOG0148|consen 133 TIRTNWATRKPSEMNGKP--------LTFDEVY-----NQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD 199 (321)
T ss_pred eeeccccccCccccCCCC--------ccHHHHh-----ccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc
Confidence 999999988763322110 1111000 001233469999999999999999999999999999999887
Q ss_pred CCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccCCCCChh
Q 016936 188 RDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKT 238 (380)
Q Consensus 188 ~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~~~~~~~ 238 (380)
+|||||.|.+.|.|.+||-.+|+.++.|..++|.|.+.......+
T Consensus 200 ------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~~~~~ 244 (321)
T KOG0148|consen 200 ------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDGINN 244 (321)
T ss_pred ------cceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCCCCCc
Confidence 479999999999999999999999999999999998876554443
No 24
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.95 E-value=1.5e-26 Score=220.17 Aligned_cols=289 Identities=18% Similarity=0.236 Sum_probs=209.8
Q ss_pred hhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceecC
Q 016936 28 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 106 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~g 106 (380)
..+..+.|.|+|||..+..++|...|.+||. |..+-+.+.--.|+|.|.++.+|.+|+ .+....+..
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~------------i~rvllp~~G~~aiv~fl~p~eAr~Afrklaysr~k~ 448 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGE------------IGRVLLPPGGTGAIVEFLNPLEARKAFRKLAYSRFKS 448 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccc------------cceeecCcccceeeeeecCccchHHHHHHhchhhhcc
Confidence 6788899999999999999999999999998 555544544445999999999999999 799999999
Q ss_pred ceEEEecCCCCCcccc---ccC-----C-----CCCCCCCcccccc---c----CCCC-CCCCCCCCCEEEEcCCCCCCC
Q 016936 107 VAVRVRRPTDYNPTLA---AAL-----G-----PGQPSPNLNLAAV---G----LASG-AIGGAEGPDRVFVGGLPYYFT 165 (380)
Q Consensus 107 ~~i~v~~~~~~~~~~~---~~~-----~-----~~~~~~~~~~~~~---~----~~~~-~~~~~~~~~~l~V~nlp~~~t 165 (380)
.++.+.|+..--.... ... . +.......+-... . .+.- .........+|||+||+++++
T Consensus 449 ~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt 528 (725)
T KOG0110|consen 449 APLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTT 528 (725)
T ss_pred CccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccc
Confidence 9999988643222200 000 0 0000000000000 0 0000 001122223499999999999
Q ss_pred HHHHHHHHHhcCCeeEEEEeeCCCC---CCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccCCCCChhHHHH
Q 016936 166 ETQIKELLESFGTLHGFDLVKDRDT---GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQES 242 (380)
Q Consensus 166 ~~~l~~~F~~~G~i~~v~l~~~~~~---~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~ 242 (380)
.+++..+|+..|.|..+.|...++. -.+.|||||+|.+.++|+.|+..|+|..+.|+.|.|+++......... .
T Consensus 529 ~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~g--K- 605 (725)
T KOG0110|consen 529 LEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVG--K- 605 (725)
T ss_pred hhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccc--c-
Confidence 9999999999999999988765431 135699999999999999999999999999999999998611100000 0
Q ss_pred HHHHHHHHHHHHHHHhhhcCccccCCCCCccCCccceEEEEeccCCcccCCChHHHHHHHHHHHHhhcccCCeEEEEecC
Q 016936 243 ILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPR 322 (380)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~f~~~G~I~~v~i~~ 322 (380)
.. ..... ....++.|.++.++..+++.+|+.||.|.+|.|++
T Consensus 606 ----------------------------~~-~~kk~---------~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPK 647 (725)
T KOG0110|consen 606 ----------------------------KK-SKKKK---------GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPK 647 (725)
T ss_pred ----------------------------cc-ccccc---------cceeeeeccchHHHHHHHHHHHhcccceeeeccch
Confidence 00 00110 12234556778888899999999999999999988
Q ss_pred CCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCCeEEEEEeccccc
Q 016936 323 PDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDK 372 (380)
Q Consensus 323 ~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~~~~~ 372 (380)
.- .. ..++|+|||+|-++.+|.+|+++|.+.++-||+|.++|+..+.
T Consensus 648 K~-~k--~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 648 KI-GK--GAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred hh-cc--hhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccch
Confidence 62 22 3345667999999999999999999999999999999998865
No 25
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.94 E-value=9.9e-26 Score=219.62 Aligned_cols=176 Identities=20% Similarity=0.370 Sum_probs=140.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEccc
Q 016936 152 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 231 (380)
Q Consensus 152 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~ 231 (380)
.++|||+|||+.+++++|+++|++||.|.+|+++.++.+++++|||||+|.+.++|++|++.|||..+.|+.|+|.+...
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~ 186 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 186 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccccc
Confidence 36999999999999999999999999999999999988999999999999999999999999999999999999986432
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHhhhcCccccCCCCCccCCccceEEEEecc-CCcccCCChHHHHHHHHHHHHhhc
Q 016936 232 SSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEA-ITADALADDEEYEEILEDMREECG 310 (380)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~L~~~f~ 310 (380)
...... ... ...........+.+.|. .+.++ ++|+++|+
T Consensus 187 ~p~a~~-~~~----------------------------~~~~~~~~~~rLfVgnLp~~vte-----------edLk~lFs 226 (612)
T TIGR01645 187 MPQAQP-IID----------------------------MVQEEAKKFNRIYVASVHPDLSE-----------TDIKSVFE 226 (612)
T ss_pred cccccc-ccc----------------------------cccccccccceEEeecCCCCCCH-----------HHHHHHHh
Confidence 111000 000 00000112234555542 22222 69999999
Q ss_pred ccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCCeEEEEEeccc
Q 016936 311 KYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPE 370 (380)
Q Consensus 311 ~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~~~ 370 (380)
+||.|.++.+.++..++. ++ |||||+|.+.++|.+|++.|||..++|+.|+|.++..
T Consensus 227 ~FG~I~svrl~~D~~tgk-sK--GfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 227 AFGEIVKCQLARAPTGRG-HK--GYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred hcCCeeEEEEEecCCCCC-cC--CeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Confidence 999999999998775443 44 5669999999999999999999999999999998764
No 26
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=6.1e-24 Score=196.35 Aligned_cols=190 Identities=26% Similarity=0.373 Sum_probs=147.2
Q ss_pred cceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCC-----CcEEEEEeCCHHHHHHHH-HcCCceec
Q 016936 32 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE-----KKFAFVEMRTVEEASNAM-ALDGIIFE 105 (380)
Q Consensus 32 ~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~-----~g~afV~f~~~~~a~~ai-~l~~~~i~ 105 (380)
-=+|-|+|||+.+.+.||..+|++||. |..+.++.. +|||||.|....+|.+|+ .+|+..|.
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~------------V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~ 184 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGK------------VVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKID 184 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcce------------EEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceec
Confidence 557999999999999999999999998 777877642 499999999999999999 79999999
Q ss_pred CceEEEecCCCCCcccccc----------------CC-CCCC---------------CC--Ccccc-------------c
Q 016936 106 GVAVRVRRPTDYNPTLAAA----------------LG-PGQP---------------SP--NLNLA-------------A 138 (380)
Q Consensus 106 g~~i~v~~~~~~~~~~~~~----------------~~-~~~~---------------~~--~~~~~-------------~ 138 (380)
|++|-|.|+-.++.-...+ .. +... .. +.+.. .
T Consensus 185 gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~ 264 (678)
T KOG0127|consen 185 GRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDD 264 (678)
T ss_pred CceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccc
Confidence 9999999987665433211 00 0000 00 00000 0
Q ss_pred c--cCCCC------------CCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcCh
Q 016936 139 V--GLASG------------AIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDP 204 (380)
Q Consensus 139 ~--~~~~~------------~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~ 204 (380)
+ ..+++ .........+|||+|||+++++++|..+|++||.|..+.++.+++++.++|+|||.|.+.
T Consensus 265 vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~ 344 (678)
T KOG0127|consen 265 VDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQ 344 (678)
T ss_pred cccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccH
Confidence 0 00000 001112237999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHh-----CC-CeeCCeEEEEEEcccCC
Q 016936 205 AVTDIACAAL-----NG-LKMGDKTLTVRRATASS 233 (380)
Q Consensus 205 ~~A~~Ai~~l-----~g-~~~~g~~i~v~~~~~~~ 233 (380)
..|+.||.+- .| ..+.||.|.|..+..+.
T Consensus 345 ~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 345 IAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRK 379 (678)
T ss_pred HHHHHHHHhcCccCCCceEEEeccEEeeeeccchH
Confidence 9999999976 23 67899999999986653
No 27
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.91 E-value=2.1e-23 Score=204.22 Aligned_cols=178 Identities=21% Similarity=0.302 Sum_probs=141.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcc
Q 016936 151 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 230 (380)
Q Consensus 151 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~ 230 (380)
..++|||+|||..+++++|+++|++||.|..|+++.++.++.++|||||+|.+.++|.+|+. |+|..+.|++|.|.++.
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~~ 166 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSSQ 166 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeecc
Confidence 45799999999999999999999999999999999998899999999999999999999997 79999999999998753
Q ss_pred cCCCCChhHHHHHHHHHHHHHHHHHHHhhhcCccccCCCCCccCCccceEEEEeccCCcccCCChHHHHHHHHHHHHhhc
Q 016936 231 ASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECG 310 (380)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~f~ 310 (380)
....... ... ....+ .......+.+.|+... .++++|+++|+
T Consensus 167 ~~~~~~~-----------------~~~-----~~~~~------~~p~~~~l~v~nl~~~----------~te~~l~~~f~ 208 (457)
T TIGR01622 167 AEKNRAA-----------------KAA-----THQPG------DIPNFLKLYVGNLHFN----------ITEQELRQIFE 208 (457)
T ss_pred hhhhhhh-----------------hcc-----cccCC------CCCCCCEEEEcCCCCC----------CCHHHHHHHHH
Confidence 2211000 000 00000 0112456666664321 12269999999
Q ss_pred ccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCCeEEEEEeccc
Q 016936 311 KYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPE 370 (380)
Q Consensus 311 ~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~~~ 370 (380)
+||.|..|.+..+..++. ..|+|||+|.+.++|.+|++.|||..|.|+.|+|.|+.+
T Consensus 209 ~~G~i~~v~~~~d~~~g~---~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 209 PFGDIEDVQLHRDPETGR---SKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred hcCCeEEEEEEEcCCCCc---cceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 999999999998775533 346779999999999999999999999999999999764
No 28
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.91 E-value=6.6e-24 Score=170.42 Aligned_cols=165 Identities=28% Similarity=0.461 Sum_probs=143.7
Q ss_pred ccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecC------CCcEEEEEeCCHHHHHHHH-HcCCce
Q 016936 31 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH------EKKFAFVEMRTVEEASNAM-ALDGII 103 (380)
Q Consensus 31 ~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~------~~g~afV~f~~~~~a~~ai-~l~~~~ 103 (380)
...||||+||+..++++-|+++|-+.|+ |+++.+++ .+||||++|.+.|+|.=|+ -++...
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagp------------Vv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~Vk 75 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGP------------VVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVK 75 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCc------------eeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHH
Confidence 4579999999999999999999999998 77777654 5799999999999999999 688888
Q ss_pred ecCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeE-E
Q 016936 104 FEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHG-F 182 (380)
Q Consensus 104 i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~-v 182 (380)
+.|++|+|..++..+.+ .....++||+||.+.+++..|++.|+.||.+.. -
T Consensus 76 LYgrpIrv~kas~~~~n----------------------------l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P 127 (203)
T KOG0131|consen 76 LYGRPIRVNKASAHQKN----------------------------LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPP 127 (203)
T ss_pred hcCceeEEEeccccccc----------------------------ccccccccccccCcchhHHHHHHHHHhccccccCC
Confidence 99999999886632211 111258999999999999999999999999754 5
Q ss_pred EEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccCCCC
Q 016936 183 DLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQ 235 (380)
Q Consensus 183 ~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~~~~ 235 (380)
++++++++|.++|||||.|.+.+.+.+|+..++|+.+..+++.|.++..+...
T Consensus 128 ~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 128 KIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred cccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCCC
Confidence 88999989999999999999999999999999999999999999998765443
No 29
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=9.5e-24 Score=190.09 Aligned_cols=171 Identities=23% Similarity=0.351 Sum_probs=135.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCC-CeeCC--eEEEEEEc
Q 016936 153 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNG-LKMGD--KTLTVRRA 229 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g-~~~~g--~~i~v~~~ 229 (380)
-++||+.+|..|+|.||+.+|++||.|.+|.+++|+.++.++|||||.|.++++|.+|+.+|+. +.+.| .+|.|+++
T Consensus 35 vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~A 114 (510)
T KOG0144|consen 35 VKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYA 114 (510)
T ss_pred hhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeeccc
Confidence 5799999999999999999999999999999999999999999999999999999999999876 45554 56788777
Q ss_pred ccCCCCChhHHHHHHHHHHHHHHHHHHHhhhcCccccCCCCCccCCccceEEEEeccCCcccCCChHHHHHHHHHHHHhh
Q 016936 230 TASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREEC 309 (380)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~f 309 (380)
......- ....+. ++.-.....++.+++++|
T Consensus 115 d~E~er~--------------------------------------~~e~KL-----------Fvg~lsK~~te~evr~iF 145 (510)
T KOG0144|consen 115 DGERERI--------------------------------------VEERKL-----------FVGMLSKQCTENEVREIF 145 (510)
T ss_pred chhhhcc--------------------------------------ccchhh-----------hhhhccccccHHHHHHHH
Confidence 4321110 000000 111111223346999999
Q ss_pred cccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcc-cCC--eEEEEEeccccccccc
Q 016936 310 GKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRK-FGG--NTVNAFYYPEDKYFNK 376 (380)
Q Consensus 310 ~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~-i~g--r~l~v~~~~~~~~~~~ 376 (380)
++||.|++|.|.++... .++|||||+|.+.+.|..|++.|||.+ +.| .+|.|-|++.++-..+
T Consensus 146 s~fG~Ied~~ilrd~~~----~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~ 211 (510)
T KOG0144|consen 146 SRFGHIEDCYILRDPDG----LSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDG 211 (510)
T ss_pred HhhCccchhhheecccc----cccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCchH
Confidence 99999999999998753 345899999999999999999999985 666 6899999998775543
No 30
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.90 E-value=1.6e-22 Score=177.70 Aligned_cols=213 Identities=19% Similarity=0.333 Sum_probs=163.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCee--------EEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCC
Q 016936 150 EGPDRVFVGGLPYYFTETQIKELLESFGTLH--------GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD 221 (380)
Q Consensus 150 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 221 (380)
.....|||.|||.++|.+++.++|++||.|. .|+|.++. .|.-+|-|++.|...+++..|+..|++..++|
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 3446799999999999999999999999985 48999985 59999999999999999999999999999999
Q ss_pred eEEEEEEcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhcCccccCCCCCccCCccceEEEEeccCCcccCCChHH-HHH
Q 016936 222 KTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEE-YEE 300 (380)
Q Consensus 222 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~ 300 (380)
+.|+|+.|.-....................+++.+.+..-++. +...........+++++.|++++.++..+.. ..+
T Consensus 211 ~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~--pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~d 288 (382)
T KOG1548|consen 211 KKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWR--PDRDDPSKARADRTVILKNMFTPEDFEKNPDLLND 288 (382)
T ss_pred cEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccC--CCccccccccCCcEEEeeecCCHHHhccCHHHHHH
Confidence 9999998865432221111110101111112222211111111 1112222356678999999999999988844 788
Q ss_pred HHHHHHHhhcccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCCeEEEEEeccccc
Q 016936 301 ILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDK 372 (380)
Q Consensus 301 ~~~~L~~~f~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~~~~~ 372 (380)
+.++|++.|.+||.|.+|.+...++. |++-|.|.+.++|..|++.|+||+|+||.|..+......
T Consensus 289 lkedl~eec~K~G~v~~vvv~d~hPd-------GvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 289 LKEDLTEECEKFGQVRKVVVYDRHPD-------GVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKT 353 (382)
T ss_pred HHHHHHHHHHHhCCcceEEEeccCCC-------ceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcc
Confidence 99999999999999999999877664 588999999999999999999999999999999877644
No 31
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=2.8e-22 Score=169.46 Aligned_cols=199 Identities=23% Similarity=0.368 Sum_probs=152.3
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceec
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFE 105 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~ 105 (380)
.+.-..-.|||.+||+.+|.+||+..|++||.|.-.. ++.+-.++-++|.+||.|+..++|+.|| .|||..=-
T Consensus 122 s~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSR------iL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~ 195 (360)
T KOG0145|consen 122 SDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSR------ILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPS 195 (360)
T ss_pred hhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhh------hhhhcccceecceeEEEecchhHHHHHHHhccCCCCC
Confidence 3445566799999999999999999999999985432 2333345678999999999999999999 79998866
Q ss_pred C--ceEEEecCCCCCcccccc-------------CCCCCCC----------------CCccccccc-----CCCCCCCCC
Q 016936 106 G--VAVRVRRPTDYNPTLAAA-------------LGPGQPS----------------PNLNLAAVG-----LASGAIGGA 149 (380)
Q Consensus 106 g--~~i~v~~~~~~~~~~~~~-------------~~~~~~~----------------~~~~~~~~~-----~~~~~~~~~ 149 (380)
| .+|.|..+.......... .++..-+ ........+ ..-..++..
T Consensus 196 g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~ 275 (360)
T KOG0145|consen 196 GCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGP 275 (360)
T ss_pred CCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCC
Confidence 6 679998765433221100 0100000 000000000 111234455
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEc
Q 016936 150 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 229 (380)
Q Consensus 150 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~ 229 (380)
....+|||-||.+++++.-|+.+|.+||.|..|++++|..+++.+|||||.+.+-++|..||..|||..++++.+.|.+.
T Consensus 276 ~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFK 355 (360)
T KOG0145|consen 276 GGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 355 (360)
T ss_pred CCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEe
Confidence 66789999999999999999999999999999999999989999999999999999999999999999999999999986
Q ss_pred cc
Q 016936 230 TA 231 (380)
Q Consensus 230 ~~ 231 (380)
..
T Consensus 356 tn 357 (360)
T KOG0145|consen 356 TN 357 (360)
T ss_pred cC
Confidence 53
No 32
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.90 E-value=1.8e-22 Score=196.61 Aligned_cols=161 Identities=24% Similarity=0.327 Sum_probs=132.3
Q ss_pred cccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEe-------cCCCcEEEEEeCCHHHHHHHH-HcCC
Q 016936 30 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI-------NHEKKFAFVEMRTVEEASNAM-ALDG 101 (380)
Q Consensus 30 ~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~-------~~~~g~afV~f~~~~~a~~ai-~l~~ 101 (380)
...++|||+|||..+++++|.+.|++++.. ++++.+ .+++|||||+|.+.++|..|+ .++.
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~eg-----------vv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~ 204 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTEG-----------VVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMP 204 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccCC-----------ceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhc
Confidence 457899999999999999999999998641 222222 356899999999999999999 6653
Q ss_pred --ceecCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhc--C
Q 016936 102 --IIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESF--G 177 (380)
Q Consensus 102 --~~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G 177 (380)
..+.|+.|.|.|+........ ......++|||+|||..+++++|+++|++| |
T Consensus 205 gki~l~Gr~I~VdwA~p~~~~d~------------------------~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G 260 (578)
T TIGR01648 205 GRIQLWGHVIAVDWAEPEEEVDE------------------------DVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPG 260 (578)
T ss_pred cceEecCceEEEEeecccccccc------------------------cccccccEEEEeCCCCCCCHHHHHHHHHhcCCC
Confidence 458899999999765321100 001223689999999999999999999999 9
Q ss_pred CeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 016936 178 TLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 233 (380)
Q Consensus 178 ~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~~ 233 (380)
.|.+|.+++ +||||+|.+.++|++|++.||+..|.|+.|+|.++.+..
T Consensus 261 ~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~ 308 (578)
T TIGR01648 261 KVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVD 308 (578)
T ss_pred ceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCC
Confidence 999997754 499999999999999999999999999999999997753
No 33
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.89 E-value=2.9e-22 Score=198.94 Aligned_cols=194 Identities=20% Similarity=0.243 Sum_probs=138.9
Q ss_pred cccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceecCce
Q 016936 30 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 108 (380)
Q Consensus 30 ~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~g~~ 108 (380)
...++|||+|||..+++++|+++|+.||.|... .++.+...+.++|||||+|.+.++|..|+ .|++..|.|++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~------~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~ 366 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAF------NLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNK 366 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEE------EEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 456899999999999999999999999985321 11122223557899999999999999999 79999999999
Q ss_pred EEEecCCCCCccccccCCCCCCCCCcccccccCCCCC-CCCCCCCCEEEEcCCCCCC----------CHHHHHHHHHhcC
Q 016936 109 VRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGA-IGGAEGPDRVFVGGLPYYF----------TETQIKELLESFG 177 (380)
Q Consensus 109 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~V~nlp~~~----------t~~~l~~~F~~~G 177 (380)
|.|.++................ + ......+..... ..+....+.|+|.|+.... ..++|+++|++||
T Consensus 367 l~v~~a~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G 444 (509)
T TIGR01642 367 LHVQRACVGANQATIDTSNGMA-P-VTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYG 444 (509)
T ss_pred EEEEECccCCCCCCcccccccc-c-cccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcC
Confidence 9999876433221111000000 0 000000000000 0112345789999996421 1367899999999
Q ss_pred CeeEEEEeeC---CCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEccc
Q 016936 178 TLHGFDLVKD---RDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 231 (380)
Q Consensus 178 ~i~~v~l~~~---~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~ 231 (380)
.|..|.|++. ..++.+.|+|||+|.+.++|++|+..|||..|.|+.|.|.+...
T Consensus 445 ~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 445 PLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred CeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 9999999874 22356689999999999999999999999999999999998753
No 34
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=4.9e-22 Score=179.96 Aligned_cols=165 Identities=22% Similarity=0.322 Sum_probs=139.6
Q ss_pred hcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec-------CCCcEEEEEeCCHHHHHHHH-H-c
Q 016936 29 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN-------HEKKFAFVEMRTVEEASNAM-A-L 99 (380)
Q Consensus 29 ~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~-------~~~g~afV~f~~~~~a~~ai-~-l 99 (380)
+...|+|||+|||+..++++|.+.|++.+. -|+++.+. +++|||||+|.+...|.-|- + +
T Consensus 161 Svan~RLFiG~IPK~k~keeIlee~~kVte-----------GVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~ 229 (506)
T KOG0117|consen 161 SVANCRLFIGNIPKTKKKEEILEEMKKVTE-----------GVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLM 229 (506)
T ss_pred eeecceeEeccCCccccHHHHHHHHHhhCC-----------CeeEEEEecCccccccccceEEEEeecchhHHHHHhhcc
Confidence 578899999999999999999999999965 37777764 46899999999999988888 4 4
Q ss_pred CC-ceecCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCC
Q 016936 100 DG-IIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGT 178 (380)
Q Consensus 100 ~~-~~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~ 178 (380)
++ ..+-|+.+.|.|+........ ...+.-+.|||+||+..+|++.|+++|..||.
T Consensus 230 ~g~~klwgn~~tVdWAep~~e~de------------------------d~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~ 285 (506)
T KOG0117|consen 230 PGKIKLWGNAITVDWAEPEEEPDE------------------------DTMSKVKVLYVRNLMESTTEETLKKLFNEFGK 285 (506)
T ss_pred CCceeecCCcceeeccCcccCCCh------------------------hhhhheeeeeeeccchhhhHHHHHHHHHhccc
Confidence 44 458899999999876432110 01233468999999999999999999999999
Q ss_pred eeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccCCCCC
Q 016936 179 LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQS 236 (380)
Q Consensus 179 i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~~~~~ 236 (380)
|++|+.++| ||||.|.++++|.+||+.+||++|.|..|.|..|++....+
T Consensus 286 veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 286 VERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKK 335 (506)
T ss_pred eEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhc
Confidence 999998876 99999999999999999999999999999999998765443
No 35
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.87 E-value=1.3e-21 Score=157.27 Aligned_cols=172 Identities=22% Similarity=0.341 Sum_probs=137.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEc
Q 016936 150 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 229 (380)
Q Consensus 150 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~ 229 (380)
.+..+|||+||+..++++.|+++|-+.|+|..+++++|+.++..+||||++|.++|+|+.|++-||...+.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 34469999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCChhHHHHHHHHHHHHHHHHHHHhhhcCccccCCCCCccCCccceEEEEeccCCcccCCChHHHHHHHHHHHHhh
Q 016936 230 TASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREEC 309 (380)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~f 309 (380)
...... ....--+.+.| ++..+|. .-|...|
T Consensus 87 s~~~~n---------------------------------------l~vganlfvgN---Ld~~vDe-------~~L~dtF 117 (203)
T KOG0131|consen 87 SAHQKN---------------------------------------LDVGANLFVGN---LDPEVDE-------KLLYDTF 117 (203)
T ss_pred cccccc---------------------------------------ccccccccccc---cCcchhH-------HHHHHHH
Confidence 621000 00001112222 2212221 4788999
Q ss_pred cccCCeEE-EEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCCeEEEEEecccccc
Q 016936 310 GKYGTLVN-VVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKY 373 (380)
Q Consensus 310 ~~~G~I~~-v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~~~~~~ 373 (380)
+.||.+.+ -++++++.++. ++| ++||.|++.+.+.+|+..|||..+..++++|+|+-.+..
T Consensus 118 safG~l~~~P~i~rd~~tg~-~~~--~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 118 SAFGVLISPPKIMRDPDTGN-PKG--FGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDT 179 (203)
T ss_pred HhccccccCCcccccccCCC-CCC--CeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCC
Confidence 99999877 35666665443 454 559999999999999999999999999999999977543
No 36
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.86 E-value=2.2e-21 Score=173.72 Aligned_cols=309 Identities=15% Similarity=0.182 Sum_probs=194.7
Q ss_pred hcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCC--ceec
Q 016936 29 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDG--IIFE 105 (380)
Q Consensus 29 ~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~--~~i~ 105 (380)
..+++.|+++|||.+++|.||.+++.+||. |..+...+.+..||++|.+.++|...+ .... -.++
T Consensus 25 ~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~------------vtn~~~lkGknQAflem~d~~sAvtmv~~y~~~~p~lr 92 (492)
T KOG1190|consen 25 AEPSKVVHLRNLPWEVTEEELISLGLPFGK------------VTNLLMLKGKNQAFLEMADEESAVTMVNYYTSVTPVLR 92 (492)
T ss_pred cCCcceeEeccCCccccHHHHHHhcccccc------------eeeeeeeccchhhhhhhcchhhhhheeecccccCcccc
Confidence 357899999999999999999999999998 777777888899999999999999866 3333 3488
Q ss_pred CceEEEecCCCCCccccccCC------C---CCCCCCc--ccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHH
Q 016936 106 GVAVRVRRPTDYNPTLAAALG------P---GQPSPNL--NLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLE 174 (380)
Q Consensus 106 g~~i~v~~~~~~~~~~~~~~~------~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~ 174 (380)
|++|.|+++.-.......... . ....... ........-+...+.+.--+++|.++-+.++.+.|..+|+
T Consensus 93 ~~~~yiq~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS 172 (492)
T KOG1190|consen 93 GQPIYIQYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFS 172 (492)
T ss_pred CcceeehhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHh
Confidence 999999875332211100000 0 0000000 0000001111222333446789999999999999999999
Q ss_pred hcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCee--CCeEEEEEEcccCCC-CC-hh----HHHHHHHH
Q 016936 175 SFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKM--GDKTLTVRRATASSG-QS-KT----EQESILAQ 246 (380)
Q Consensus 175 ~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~i~v~~~~~~~~-~~-~~----~~~~~~~~ 246 (380)
+||.|..+.-.. ....-.|+|+|.+.+.|+.|...|+|..+ +.|.+++.++....- .+ .. +..+...+
T Consensus 173 ~fG~VlKIiTF~----Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP 248 (492)
T KOG1190|consen 173 KFGFVLKIITFT----KNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLP 248 (492)
T ss_pred hcceeEEEEEEe----cccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCC
Confidence 999998774432 22233599999999999999999999876 446677777544320 00 00 00000000
Q ss_pred HH-HHHHHHHHHhhh-------cCc--cccCC-----CC-CccCC-ccceEEEEeccCCcccCCChHHHHHHHHHHHHhh
Q 016936 247 AQ-QHIAIQKMALQT-------SGM--NTLGG-----GM-SLFGE-TLAKVLCLTEAITADALADDEEYEEILEDMREEC 309 (380)
Q Consensus 247 ~~-~~~~~~~~~~~~-------~~~--~~~~~-----~~-~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~f 309 (380)
.. .+..++...... +|. ..+.+ .. ..... ....++.++| .+. +..+.+.|..+|
T Consensus 249 ~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsn-ln~--------~~VT~d~LftlF 319 (492)
T KOG1190|consen 249 VGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSN-LNE--------EAVTPDVLFTLF 319 (492)
T ss_pred CCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEec-Cch--------hccchhHHHHHH
Confidence 00 000000000000 000 00000 00 00000 1123333333 222 223336899999
Q ss_pred cccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCCeEEEEEeccc
Q 016936 310 GKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPE 370 (380)
Q Consensus 310 ~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~~~ 370 (380)
+-||.|.+|+|+.++++ -|.|.|.+...|+-|+..|+|.++.|++|+|.|..-
T Consensus 320 gvYGdVqRVkil~nkkd--------~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 320 GVYGDVQRVKILYNKKD--------NALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred hhhcceEEEEeeecCCc--------ceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 99999999999987753 679999999999999999999999999999999754
No 37
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.85 E-value=4.4e-21 Score=183.10 Aligned_cols=168 Identities=23% Similarity=0.439 Sum_probs=141.7
Q ss_pred ceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCC---------CcEEEEEeCCHHHHHHHH-HcCCc
Q 016936 33 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE---------KKFAFVEMRTVEEASNAM-ALDGI 102 (380)
Q Consensus 33 ~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~---------~g~afV~f~~~~~a~~ai-~l~~~ 102 (380)
++|||+||+.++|.+++..+|+..|. |+++.+.+. .|||||+|.+.++|+.|+ .|+|+
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~------------VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgt 583 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGT------------VLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGT 583 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCe------------EEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCc
Confidence 34999999999999999999999988 777766543 399999999999999999 79999
Q ss_pred eecCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEE
Q 016936 103 IFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGF 182 (380)
Q Consensus 103 ~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v 182 (380)
.|.|+.|.|..+..+... +.+ ..... -.....|+|+|+|+.++..+++.+|..||.+..|
T Consensus 584 vldGH~l~lk~S~~k~~~---~~g-K~~~~----------------kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksv 643 (725)
T KOG0110|consen 584 VLDGHKLELKISENKPAS---TVG-KKKSK----------------KKKGTKILVRNIPFEATKREVRKLFTAFGQLKSV 643 (725)
T ss_pred eecCceEEEEeccCcccc---ccc-ccccc----------------ccccceeeeeccchHHHHHHHHHHHhcccceeee
Confidence 999999999986622111 111 00000 1113689999999999999999999999999999
Q ss_pred EEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 016936 183 DLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 232 (380)
Q Consensus 183 ~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~ 232 (380)
+++.-...+.++|||||.|.++.+|.+|+..|.+..+.||++.++|+...
T Consensus 644 RlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 644 RLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSD 693 (725)
T ss_pred ccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccc
Confidence 99987566788999999999999999999999999999999999999754
No 38
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.85 E-value=7.8e-21 Score=163.31 Aligned_cols=148 Identities=22% Similarity=0.407 Sum_probs=130.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 016936 153 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 232 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~ 232 (380)
..+||+|||..+++.+|+.+|++||.|.+|+|+++ ||||..++...|+.|+..|+|..|.|..|.|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999876 9999999999999999999999999999999987654
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHhhhcCccccCCCCCccCCccceEEEEeccCCcccCCChHHHHHHHHHHHHhhccc
Q 016936 233 SGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKY 312 (380)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~f~~~ 312 (380)
+..++.+.+.|+...... .+|+..|++|
T Consensus 75 ------------------------------------------sk~stkl~vgNis~tctn----------~ElRa~fe~y 102 (346)
T KOG0109|consen 75 ------------------------------------------SKASTKLHVGNISPTCTN----------QELRAKFEKY 102 (346)
T ss_pred ------------------------------------------CCCccccccCCCCccccC----------HHHhhhhccc
Confidence 334445555554333221 5899999999
Q ss_pred CCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCCeEEEEEecccc
Q 016936 313 GTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 371 (380)
Q Consensus 313 G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~~~~ 371 (380)
|+|..|.|.++ ++||.|+-.++|..|+..|+|+.|.|++++|+..+..
T Consensus 103 gpviecdivkd-----------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 103 GPVIECDIVKD-----------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred CCceeeeeecc-----------eeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 99999999873 7799999999999999999999999999999998764
No 39
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.85 E-value=6.5e-21 Score=163.80 Aligned_cols=149 Identities=24% Similarity=0.437 Sum_probs=133.9
Q ss_pred ceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceecCceEEE
Q 016936 33 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRV 111 (380)
Q Consensus 33 ~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~g~~i~v 111 (380)
-+|||+|||..+++.+|+.+|.+||+ |+.+.+. |.||||-..+...|+-|| .||+-.|+|..|.|
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygk------------VlECDIv--KNYgFVHiEdktaaedairNLhgYtLhg~nInV 68 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGK------------VLECDIV--KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINV 68 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCc------------eEeeeee--cccceEEeecccccHHHHhhcccceecceEEEE
Confidence 36899999999999999999999998 6666655 567899999999999999 69999999999999
Q ss_pred ecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCC
Q 016936 112 RRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTG 191 (380)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~ 191 (380)
+-++++++ .+.+|+|+|+.+.++.++|+..|.+||+|.+|+++++
T Consensus 69 eaSksKsk-------------------------------~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd---- 113 (346)
T KOG0109|consen 69 EASKSKSK-------------------------------ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD---- 113 (346)
T ss_pred EeccccCC-------------------------------CccccccCCCCccccCHHHhhhhcccCCceeeeeecc----
Confidence 98766532 2258999999999999999999999999999999876
Q ss_pred CCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccCCC
Q 016936 192 NSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSG 234 (380)
Q Consensus 192 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~~~ 234 (380)
|+||.|...++|..|+..|++.+|.|++|+|+.+..+..
T Consensus 114 ----y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrlr 152 (346)
T KOG0109|consen 114 ----YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLR 152 (346)
T ss_pred ----eeEEEEeeccchHHHHhcccccccccceeeeeeeccccc
Confidence 999999999999999999999999999999999877643
No 40
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=2.7e-20 Score=164.50 Aligned_cols=173 Identities=21% Similarity=0.442 Sum_probs=142.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 016936 153 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 232 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~ 232 (380)
.+|||+.+.+.+.++.|+..|..||+|.++.+.-|+.+++++|||||+|+-+|.|+.|++.|||..++||.|+|.+.+.
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN- 192 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN- 192 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC-
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999985321
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHhhhcCccccCCCCCccCCccceEEEEeccCCcccCCChHHHHHHHHHHHHhhccc
Q 016936 233 SGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKY 312 (380)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~f~~~ 312 (380)
..+-.+--+.....+ ....++++-+-..++.+ +||+.+|+-|
T Consensus 193 mpQAQpiID~vqeeA---------------------------k~fnRiYVaSvHpDLSe-----------~DiKSVFEAF 234 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEA---------------------------KKFNRIYVASVHPDLSE-----------TDIKSVFEAF 234 (544)
T ss_pred CcccchHHHHHHHHH---------------------------HhhheEEeeecCCCccH-----------HHHHHHHHhh
Confidence 111111111111111 23446676666666655 6999999999
Q ss_pred CCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCCeEEEEEe
Q 016936 313 GTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFY 367 (380)
Q Consensus 313 G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~~ 367 (380)
|.|.+|.+.+.. +++..||+| ||+|.+..+-..|+..||-..++|.-|+|--
T Consensus 235 G~I~~C~LAr~p-t~~~HkGyG--fiEy~n~qs~~eAiasMNlFDLGGQyLRVGk 286 (544)
T KOG0124|consen 235 GEIVKCQLARAP-TGRGHKGYG--FIEYNNLQSQSEAIASMNLFDLGGQYLRVGK 286 (544)
T ss_pred cceeeEEeeccC-CCCCcccee--eEEeccccchHHHhhhcchhhcccceEeccc
Confidence 999999999877 555566666 9999999999999999999999999999853
No 41
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=4.8e-20 Score=156.54 Aligned_cols=81 Identities=28% Similarity=0.492 Sum_probs=72.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCC-ee--CCeEEEEE
Q 016936 151 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGL-KM--GDKTLTVR 227 (380)
Q Consensus 151 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~-~~--~g~~i~v~ 227 (380)
..++|||+.|.+.-.|+|++.+|..||.|++|.+.+.+ .|.++|||||.|.+..+|+.||..|+|. .+ ....+.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 34799999999999999999999999999999999997 5999999999999999999999999985 34 44678898
Q ss_pred EcccC
Q 016936 228 RATAS 232 (380)
Q Consensus 228 ~~~~~ 232 (380)
++...
T Consensus 97 ~ADTd 101 (371)
T KOG0146|consen 97 FADTD 101 (371)
T ss_pred eccch
Confidence 88654
No 42
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.83 E-value=3.8e-19 Score=159.48 Aligned_cols=300 Identities=17% Similarity=0.158 Sum_probs=198.3
Q ss_pred ccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcE-EEEEeCCHHHHHHHH-HcCCceecC--
Q 016936 31 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKF-AFVEMRTVEEASNAM-ALDGIIFEG-- 106 (380)
Q Consensus 31 ~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~-afV~f~~~~~a~~ai-~l~~~~i~g-- 106 (380)
.--++.|.|+-+.++-+-|...|++||.+ ...+++.++.+| |+|.|.+.+.|+.|- .|+|+.|..
T Consensus 149 ~vLr~iie~m~ypVslDVLHqvFS~fG~V-----------lKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngc 217 (492)
T KOG1190|consen 149 PVLRTIIENMFYPVSLDVLHQVFSKFGFV-----------LKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGC 217 (492)
T ss_pred eeEEEEeccceeeeEHHHHHHHHhhccee-----------EEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCce
Confidence 44567899999999999999999999984 445556677776 999999999999999 899998765
Q ss_pred ceEEEecCCCCC------cccccc-----CCCCCCCCCccc--c------------cccCCC---------CCCCCCCCC
Q 016936 107 VAVRVRRPTDYN------PTLAAA-----LGPGQPSPNLNL--A------------AVGLAS---------GAIGGAEGP 152 (380)
Q Consensus 107 ~~i~v~~~~~~~------~~~~~~-----~~~~~~~~~~~~--~------------~~~~~~---------~~~~~~~~~ 152 (380)
..|+|.++.... ..+.++ .+....++.+.. . ..+.++ +........
T Consensus 218 CtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n 297 (492)
T KOG1190|consen 218 CTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSAN 297 (492)
T ss_pred eEEEeehhhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCc
Confidence 567777543211 111111 111101111000 0 000000 000111124
Q ss_pred CEEEEcCC-CCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEccc
Q 016936 153 DRVFVGGL-PYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 231 (380)
Q Consensus 153 ~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~ 231 (380)
..|.|.|| +..+|.+.|..+|..||.|.+|+|+..+. .-|+|++.+..+|+.|+..|+|..+.|++|+|.+++.
T Consensus 298 ~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 298 VVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred eEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 56888888 67799999999999999999999998742 3699999999999999999999999999999999876
Q ss_pred CCCCChhH-HHH-HHHHHHHHHHHHHHHhhhcCccccCCCCCccCCccceEEEEeccCCcccCCChHHHHHHHHHHHHhh
Q 016936 232 SSGQSKTE-QES-ILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREEC 309 (380)
Q Consensus 232 ~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~f 309 (380)
..-+...+ +.. -.........+. ....+++......-.++..+.++|+..- .++++|+++|
T Consensus 373 ~~vqlp~egq~d~glT~dy~~spLh-------rfkkpgsKN~~ni~PpsatlHlsnip~s----------vsee~lk~~f 435 (492)
T KOG1190|consen 373 TNVQLPREGQEDQGLTKDYGNSPLH-------RFKKPGSKNYQNIFPPSATLHLSNIPPS----------VSEEDLKNLF 435 (492)
T ss_pred ccccCCCCCCccccccccCCCCchh-------hccCcccccccccCCchhheeeccCCcc----------cchhHHHHhh
Confidence 65433221 100 000000000000 0011222222222345556667764322 1237999999
Q ss_pred cccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCCe-EEEEEeccc
Q 016936 310 GKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGN-TVNAFYYPE 370 (380)
Q Consensus 310 ~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr-~l~v~~~~~ 370 (380)
..-|...+....-... .-.|.+.+.++++|..|+..||.+.++.. .|||+|...
T Consensus 436 ~~~g~~vkafkff~kd-------~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 436 QEPGGQVKAFKFFQKD-------RKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred hcCCceEEeeeecCCC-------cceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 9999887766544321 12789999999999999999999999875 999999753
No 43
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.81 E-value=3.4e-18 Score=154.55 Aligned_cols=189 Identities=21% Similarity=0.290 Sum_probs=137.9
Q ss_pred hhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEe-----cCCCcEEEEEeCCHHHHHHHH-HcCC
Q 016936 28 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI-----NHEKKFAFVEMRTVEEASNAM-ALDG 101 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~-----~~~~g~afV~f~~~~~a~~ai-~l~~ 101 (380)
.....|.+||+|||+++.++||+++|++..- .|.-+.+ .+.+|||.|+|.++|.+++|+ .||.
T Consensus 40 ~~~r~R~vfItNIpyd~rWqdLKdLvrekvG-----------ev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk 108 (608)
T KOG4212|consen 40 VAARDRSVFITNIPYDYRWQDLKDLVREKVG-----------EVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNK 108 (608)
T ss_pred cccccceEEEecCcchhhhHhHHHHHHHhcC-----------ceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhh
Confidence 4566778999999999999999999998732 2555554 467899999999999999999 7999
Q ss_pred ceecCceEEEecCCCCCcccccc---------------------------------CCCCCC-----CCCccccccc---
Q 016936 102 IIFEGVAVRVRRPTDYNPTLAAA---------------------------------LGPGQP-----SPNLNLAAVG--- 140 (380)
Q Consensus 102 ~~i~g~~i~v~~~~~~~~~~~~~---------------------------------~~~~~~-----~~~~~~~~~~--- 140 (380)
..+.|++|.|+...+.+...-.. -+.+.. +...+.....
T Consensus 109 ~~~~GR~l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~ 188 (608)
T KOG4212|consen 109 YEVNGRELVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDY 188 (608)
T ss_pred ccccCceEEEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCcccccccc
Confidence 99999999998654422211000 000000 0000000000
Q ss_pred ------------CCCCCC-C--CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChh
Q 016936 141 ------------LASGAI-G--GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPA 205 (380)
Q Consensus 141 ------------~~~~~~-~--~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~ 205 (380)
.+-..+ . .+.-..++||.||.+.+..+.|++.|.--|.++.+.+..++. |.++|+|.++|.++-
T Consensus 189 ~~~~~~~lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKe-G~s~G~~vi~y~hpv 267 (608)
T KOG4212|consen 189 NNSSNYNLFGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKE-GNSRGFAVIEYDHPV 267 (608)
T ss_pred ccchhhhcccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccc-cccCCeeEEEecchH
Confidence 000000 0 112225799999999999999999999999999999999985 899999999999999
Q ss_pred HHHHHHHHhCCCeeCCeEEEEEE
Q 016936 206 VTDIACAALNGLKMGDKTLTVRR 228 (380)
Q Consensus 206 ~A~~Ai~~l~g~~~~g~~i~v~~ 228 (380)
.|-.||.++++.-+..+++.++.
T Consensus 268 eavqaIsml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 268 EAVQAISMLDRQGLFDRRMTVRL 290 (608)
T ss_pred HHHHHHHhhccCCCccccceeec
Confidence 99999999998777777776665
No 44
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.78 E-value=1.7e-17 Score=152.81 Aligned_cols=174 Identities=21% Similarity=0.273 Sum_probs=133.9
Q ss_pred hhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHHHcCCceecCc
Q 016936 28 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGV 107 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai~l~~~~i~g~ 107 (380)
.-....-|.+++||+.+|++||.+||+.++.- ..++.....+..|-|||+|.+.+++++|++++...+..+
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~I~---------~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~R 76 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCGIE---------NLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHR 76 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCcee---------EEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCc
Confidence 44566789999999999999999999999631 112222335667999999999999999999999999999
Q ss_pred eEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeE-EEEee
Q 016936 108 AVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHG-FDLVK 186 (380)
Q Consensus 108 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~-v~l~~ 186 (380)
-|.|-.+...+....... .....+.....|-+++||+.++++||.++|+..-.+.. +.++.
T Consensus 77 YIEVf~~~~~e~d~~~~~------------------~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~ 138 (510)
T KOG4211|consen 77 YIEVFTAGGAEADWVMRP------------------GGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPM 138 (510)
T ss_pred eEEEEccCCccccccccC------------------CCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeec
Confidence 999987654432211100 00011123358999999999999999999997655544 66677
Q ss_pred CCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcc
Q 016936 187 DRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 230 (380)
Q Consensus 187 ~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~ 230 (380)
++ .+++.|-|||+|++.+.|++|+.. |...++.|-|+|..+.
T Consensus 139 d~-rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 139 DQ-RGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRSS 180 (510)
T ss_pred cC-CCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehhH
Confidence 75 588999999999999999999997 6788899999998754
No 45
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.77 E-value=5.2e-19 Score=159.42 Aligned_cols=175 Identities=22% Similarity=0.384 Sum_probs=144.5
Q ss_pred ccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHHHcCCceecCceEE
Q 016936 31 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVR 110 (380)
Q Consensus 31 ~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai~l~~~~i~g~~i~ 110 (380)
+.++|||++|+++++++.|+++|.+||.+..+. ++.+....+++||+||+|.+++.+..++....+.|.|+.|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~------vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve 78 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCV------VMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVE 78 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEE------EeccCCCCCcccccceecCCCcchheeecccccccCCcccc
Confidence 889999999999999999999999999853311 11111234578999999999999999998888889999999
Q ss_pred EecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC
Q 016936 111 VRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 190 (380)
Q Consensus 111 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~ 190 (380)
+..+......... ......+.|||++||.++++++++++|.+||.|..+.++.|+.+
T Consensus 79 ~k~av~r~~~~~~-----------------------~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~ 135 (311)
T KOG4205|consen 79 PKRAVSREDQTKV-----------------------GRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTT 135 (311)
T ss_pred ceeccCccccccc-----------------------ccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccc
Confidence 9876543221100 00113468999999999999999999999999999999999999
Q ss_pred CCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccCCCC
Q 016936 191 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQ 235 (380)
Q Consensus 191 ~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~~~~ 235 (380)
.+++||+||.|.+++.+.+++.. ..+.|.++.+.|..|.++...
T Consensus 136 ~~~rgFgfv~~~~e~sVdkv~~~-~f~~~~gk~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 136 SRPRGFGFVTFDSEDSVDKVTLQ-KFHDFNGKKVEVKRAIPKEVM 179 (311)
T ss_pred cccccceeeEeccccccceeccc-ceeeecCceeeEeeccchhhc
Confidence 99999999999999999999984 789999999999999876433
No 46
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.77 E-value=2.2e-17 Score=146.58 Aligned_cols=285 Identities=18% Similarity=0.161 Sum_probs=192.9
Q ss_pred hcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH---HcCCceec
Q 016936 29 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM---ALDGIIFE 105 (380)
Q Consensus 29 ~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai---~l~~~~i~ 105 (380)
...+-.|.|++|-..++|.||.+-++.||+ |.-+...+.+..|.|+|.+.+.|..|+ +-+..++.
T Consensus 28 ~~~spvvhvr~l~~~v~eadl~eal~~fG~------------i~yvt~~P~~r~alvefedi~~akn~Vnfaa~n~i~i~ 95 (494)
T KOG1456|consen 28 PNPSPVVHVRGLHQGVVEADLVEALSNFGP------------IAYVTCMPHKRQALVEFEDIEGAKNCVNFAADNQIYIA 95 (494)
T ss_pred CCCCceEEEeccccccchhHHHHHHhcCCc------------eEEEEeccccceeeeeeccccchhhheehhccCccccc
Confidence 455678999999999999999999999998 666777788899999999999999999 25557788
Q ss_pred CceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEe
Q 016936 106 GVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLV 185 (380)
Q Consensus 106 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~ 185 (380)
|..-.+.++.+...++.. +.... ...---+-|-|--+.+|.+.|+.+.-..|.|.+|.|.
T Consensus 96 gq~Al~NyStsq~i~R~g---~es~~-----------------pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIf 155 (494)
T KOG1456|consen 96 GQQALFNYSTSQCIERPG---DESAT-----------------PNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIF 155 (494)
T ss_pred CchhhcccchhhhhccCC---CCCCC-----------------CCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEE
Confidence 888888776554333211 01111 1111123455656778999999999999999999987
Q ss_pred eCCCCCCCceEEEEEEcChhHHHHHHHHhCCCee--CCeEEEEEEcccCC-----CCChhHHHHHHHH------HHHHHH
Q 016936 186 KDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKM--GDKTLTVRRATASS-----GQSKTEQESILAQ------AQQHIA 252 (380)
Q Consensus 186 ~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~i~v~~~~~~~-----~~~~~~~~~~~~~------~~~~~~ 252 (380)
+. +|. .|.|+|.+.+.|++|.+.|||..| +.+.|+|+++++.. ..+..+.-..... ......
T Consensus 156 kk--ngV---QAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~ 230 (494)
T KOG1456|consen 156 KK--NGV---QAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYD 230 (494)
T ss_pred ec--cce---eeEEeechhHHHHHHHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCc
Confidence 65 333 799999999999999999999877 56789999998764 0111111000000 000000
Q ss_pred HHHH-------HhhhcC-c--------cccCCC--------------CCcc----CCccceEEEEecc-CCcccCCChHH
Q 016936 253 IQKM-------ALQTSG-M--------NTLGGG--------------MSLF----GETLAKVLCLTEA-ITADALADDEE 297 (380)
Q Consensus 253 ~~~~-------~~~~~~-~--------~~~~~~--------------~~~~----~~~~~~~~~l~~~-~~~~~~~~~~~ 297 (380)
.++. ...+.| - ..++.. .+.+ +...-.++.|... .+.
T Consensus 231 r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~-------- 302 (494)
T KOG1456|consen 231 RQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNC-------- 302 (494)
T ss_pred cccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccch--------
Confidence 0000 000011 0 001000 0000 1111223333321 122
Q ss_pred HHHHHHHHHHhhcccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCCeEEEEEecccc
Q 016936 298 YEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 371 (380)
Q Consensus 298 ~~~~~~~L~~~f~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~~~~ 371 (380)
+.|.++|..||.|++|+.++..+ |.|.|++-+....++|+..||+-.+-|.+|.|....-.
T Consensus 303 -----drlFNl~ClYGNV~rvkFmkTk~--------gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~ 363 (494)
T KOG1456|consen 303 -----DRLFNLFCLYGNVERVKFMKTKP--------GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQN 363 (494)
T ss_pred -----hhhhhhhhhcCceeeEEEeeccc--------ceeEEEcCcHHHHHHHHHHhccCccccceEEEeecccc
Confidence 48999999999999999998654 57799999999999999999999999999999876543
No 47
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.76 E-value=2.7e-18 Score=145.93 Aligned_cols=81 Identities=28% Similarity=0.525 Sum_probs=76.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 016936 153 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 232 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~ 232 (380)
.+|||-.||......+|..+|-.||.|.+.++..|+.++++++|+||.|.++.+|+.||..|||.+|+=++++|....++
T Consensus 286 CNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPk 365 (371)
T KOG0146|consen 286 CNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPK 365 (371)
T ss_pred ceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999877655
Q ss_pred C
Q 016936 233 S 233 (380)
Q Consensus 233 ~ 233 (380)
+
T Consensus 366 d 366 (371)
T KOG0146|consen 366 D 366 (371)
T ss_pred c
Confidence 3
No 48
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.74 E-value=8.5e-17 Score=134.87 Aligned_cols=185 Identities=21% Similarity=0.299 Sum_probs=141.3
Q ss_pred cccceEEEcCCCCcCcHHHHHH----HHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCcee
Q 016936 30 RHARRVYVGGLPPLANEQAIAT----FFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIF 104 (380)
Q Consensus 30 ~~~~~v~V~nLp~~~t~~~l~~----~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i 104 (380)
.+..||||.||...+..++|+. +|++||.|+. |..+...+.+|.|||.|.+.+.|..|+ .|+|..+
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ild---------I~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpF 77 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILD---------ISAFKTPKMRGQAFVVFKETEAASAALRALQGFPF 77 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEE---------EEecCCCCccCceEEEecChhHHHHHHHHhcCCcc
Confidence 3455999999999999999998 9999998543 555667788999999999999999999 8999999
Q ss_pred cCceEEEecCCCCCccccccCCC---CCCC---CCcc----------------cccccCCCCCCCCCCCCCEEEEcCCCC
Q 016936 105 EGVAVRVRRPTDYNPTLAAALGP---GQPS---PNLN----------------LAAVGLASGAIGGAEGPDRVFVGGLPY 162 (380)
Q Consensus 105 ~g~~i~v~~~~~~~~~~~~~~~~---~~~~---~~~~----------------~~~~~~~~~~~~~~~~~~~l~V~nlp~ 162 (380)
.|++++|.++...........+. ..+. .... ........ ..........+++.|||.
T Consensus 78 ygK~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~-~~~~~ppn~ilf~~niP~ 156 (221)
T KOG4206|consen 78 YGKPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPF-LAQMAPPNNILFLTNIPS 156 (221)
T ss_pred cCchhheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCc-cccCCCCceEEEEecCCc
Confidence 99999999987766544332111 0000 0000 00000000 012234456899999999
Q ss_pred CCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeC-CeEEEEEEc
Q 016936 163 YFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG-DKTLTVRRA 229 (380)
Q Consensus 163 ~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~-g~~i~v~~~ 229 (380)
.++.+.+..+|.+|..-.+++++... .+.|||+|.+...|..|...+.+..+. ...|.+.++
T Consensus 157 es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 157 ESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred chhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 99999999999999999999997652 468999999999999999999988775 777777765
No 49
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.72 E-value=3.6e-16 Score=126.12 Aligned_cols=174 Identities=26% Similarity=0.366 Sum_probs=128.4
Q ss_pred hcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCC---CcEEEEEeCCHHHHHHHH-HcCCcee
Q 016936 29 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE---KKFAFVEMRTVEEASNAM-ALDGIIF 104 (380)
Q Consensus 29 ~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~---~g~afV~f~~~~~a~~ai-~l~~~~i 104 (380)
.+.+|+|||+|||.++-+.||.++|-+||. |.++.+... -.||||+|.++.+|+.|| ..++-.+
T Consensus 3 gr~~~~iyvGNLP~diRekeieDlFyKyg~------------i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdy 70 (241)
T KOG0105|consen 3 GRNSRRIYVGNLPGDIREKEIEDLFYKYGR------------IREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDY 70 (241)
T ss_pred CcccceEEecCCCcchhhccHHHHHhhhcc------------eEEEEeccCCCCCCeeEEEecCccchhhhhhccccccc
Confidence 356899999999999999999999999998 555655432 469999999999999999 7999999
Q ss_pred cCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCC---CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeE
Q 016936 105 EGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAI---GGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHG 181 (380)
Q Consensus 105 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~ 181 (380)
.|..|+|+.+.....+-. .....+.. ...+...... ....+..+|.|.+||...+++||+++...-|.|..
T Consensus 71 dg~rLRVEfprggr~s~~-----~~G~y~gg-grgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCf 144 (241)
T KOG0105|consen 71 DGCRLRVEFPRGGRSSSD-----RRGSYSGG-GRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCF 144 (241)
T ss_pred CcceEEEEeccCCCcccc-----cccccCCC-CCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeee
Confidence 999999998765432100 00000000 0000000010 11123358999999999999999999999999988
Q ss_pred EEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCee--CCeEEEEE
Q 016936 182 FDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKM--GDKTLTVR 227 (380)
Q Consensus 182 v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~i~v~ 227 (380)
..+.+| |.+.|+|...|+-+.|+.+|+...+ .|....+.
T Consensus 145 adv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yir 185 (241)
T KOG0105|consen 145 ADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIR 185 (241)
T ss_pred eeeecc-------cceeeeeeehhhHHHHHHhhccccccCcCcEeeEE
Confidence 888776 3789999999999999999987655 34444333
No 50
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.70 E-value=2.4e-16 Score=128.40 Aligned_cols=86 Identities=22% Similarity=0.536 Sum_probs=80.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEE
Q 016936 149 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 228 (380)
Q Consensus 149 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~ 228 (380)
....++|||+|||+.+++++|+++|++||.|..|+++.++.+++++|||||+|.+.++|++|++.|++..+.|+.|+|.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34457999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cccCCC
Q 016936 229 ATASSG 234 (380)
Q Consensus 229 ~~~~~~ 234 (380)
+..+..
T Consensus 111 a~~~~~ 116 (144)
T PLN03134 111 ANDRPS 116 (144)
T ss_pred CCcCCC
Confidence 876543
No 51
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.70 E-value=2.7e-16 Score=131.83 Aligned_cols=195 Identities=17% Similarity=0.271 Sum_probs=137.4
Q ss_pred CEEEEcCCCCCCCHHHHHH----HHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEE
Q 016936 153 DRVFVGGLPYYFTETQIKE----LLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 228 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~~----~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~ 228 (380)
.+|||.||+..+..++|+. +|++||.|..|...+ +.+.+|.|||.|.+.+.|-.|+..|+|..+.|..|++.+
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 4999999999999998877 999999998887764 477899999999999999999999999999999999999
Q ss_pred cccCCCCChhHHHHHH--HHHHHHHHHHHHHhh---------hcCccccCCCCCccCCccceEEEEeccCCcccCCChHH
Q 016936 229 ATASSGQSKTEQESIL--AQAQQHIAIQKMALQ---------TSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEE 297 (380)
Q Consensus 229 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 297 (380)
|..+.......+.... ............... ...++.+.... .....+..++.+.|+....
T Consensus 87 A~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~-~~~~ppn~ilf~~niP~es------- 158 (221)
T KOG4206|consen 87 AKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFL-AQMAPPNNILFLTNIPSES------- 158 (221)
T ss_pred ccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCcc-ccCCCCceEEEEecCCcch-------
Confidence 9877543322111000 000000000000000 00011111111 2223445555555544332
Q ss_pred HHHHHHHHHHhhcccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccC-CeEEEEEecc
Q 016936 298 YEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFG-GNTVNAFYYP 369 (380)
Q Consensus 298 ~~~~~~~L~~~f~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~-gr~l~v~~~~ 369 (380)
..+.|..+|++|.....+.++...+ +.|||+|.+...|..|.+.|.|..|. ...+.+.|+.
T Consensus 159 ---~~e~l~~lf~qf~g~keir~i~~~~--------~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 159 ---ESEMLSDLFEQFPGFKEIRLIPPRS--------GIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred ---hHHHHHHHHhhCcccceeEeccCCC--------ceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 2357788899999999999887553 58899999999999999999999998 8999998875
No 52
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.68 E-value=6.3e-16 Score=137.82 Aligned_cols=293 Identities=19% Similarity=0.223 Sum_probs=190.1
Q ss_pred cccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEe-cCCCcEEEEEeCCHHHHHHHHHcCCceecCce
Q 016936 30 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI-NHEKKFAFVEMRTVEEASNAMALDGIIFEGVA 108 (380)
Q Consensus 30 ~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~-~~~~g~afV~f~~~~~a~~ai~l~~~~i~g~~ 108 (380)
.+...|..++||+..+..+|..||.-.-...++ ..+.... +.+.|+|.|.|.+.|.-.-|++.+.+.+.++.
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg-------~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ry 130 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGG-------RALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRY 130 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccc-------eeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCc
Confidence 344567889999999999999999876443222 2333332 45668999999999999999999999999999
Q ss_pred EEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCC-CC--CCCEEEEcCCCCCCCHHHHHHHHHhc----CCeeE
Q 016936 109 VRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGG-AE--GPDRVFVGGLPYYFTETQIKELLESF----GTLHG 181 (380)
Q Consensus 109 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~ 181 (380)
|.|..+.......-. +.++..... .. .--.|.+++||+++++.|+.++|.+- |..+.
T Consensus 131 ievYka~ge~f~~ia----------------gg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~eg 194 (508)
T KOG1365|consen 131 IEVYKATGEEFLKIA----------------GGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEG 194 (508)
T ss_pred eeeeccCchhheEec----------------CCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccc
Confidence 999865443221100 111111111 11 11357889999999999999999742 24556
Q ss_pred EEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhc
Q 016936 182 FDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTS 261 (380)
Q Consensus 182 v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (380)
+.++..+ +|+..|-|||.|..+++|+.|+.+ |...++.|-|++-++... +.....+.. ....+.....
T Consensus 195 vLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFRSTaa------Evqqvlnr~----~s~pLi~~~~ 262 (508)
T KOG1365|consen 195 VLFVTRP-DGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFRSTAA------EVQQVLNRE----VSEPLIPGLT 262 (508)
T ss_pred eEEEECC-CCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHHHhHH------HHHHHHHhh----ccccccCCCC
Confidence 7777776 599999999999999999999997 555666666666543210 000000000 0000000000
Q ss_pred CccccCCCCC-ccCCccceEEEEeccCCcccCCChHHHHHHHHHHHHhhcccCCeEE---EEecCCCCCCCCCCCccEEE
Q 016936 262 GMNTLGGGMS-LFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVN---VVIPRPDQNGGETPGVGKVF 337 (380)
Q Consensus 262 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~f~~~G~I~~---v~i~~~~~~~~~~~g~g~af 337 (380)
..-.++.... .+....+.|+.|.. .+|.++.+||..+|..|-.-.+ |.+..+. +|+. .|-||
T Consensus 263 sp~~p~~p~~~~p~~~~kdcvRLRG----------LPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrP---SGeAF 328 (508)
T KOG1365|consen 263 SPLLPGGPARLVPPTRSKDCVRLRG----------LPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRP---SGEAF 328 (508)
T ss_pred CCCCCCCccccCCCCCCCCeeEecC----------CChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCc---Chhhh
Confidence 0011111111 11233366777666 4677788999999998864322 5554443 4443 37889
Q ss_pred EEeechhhHHHHHHHHcCcccCCeEEEEEecccc
Q 016936 338 LEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 371 (380)
Q Consensus 338 V~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~~~~ 371 (380)
|+|.+.++|..|.+.-|.....+|-|.|--...+
T Consensus 329 Iqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~e 362 (508)
T KOG1365|consen 329 IQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVE 362 (508)
T ss_pred hhhhhhHHHHHHHHHHHHhhcccceEEEeeccHH
Confidence 9999999999999999988888999988766543
No 53
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.67 E-value=2.1e-16 Score=147.46 Aligned_cols=178 Identities=19% Similarity=0.314 Sum_probs=139.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 016936 153 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 232 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~ 232 (380)
+++|+-.++...++.+|.++|+.+|.|..|+++.|+.+++++|.|||+|.+.++...|+. |.|..+.|.+|.|......
T Consensus 180 Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~sEae 258 (549)
T KOG0147|consen 180 RTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLSEAE 258 (549)
T ss_pred HHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecccHHH
Confidence 688888899899999999999999999999999999999999999999999999999996 8999999999999875321
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHhhhcCccccCCCCCccCCccceEEEEec-cCCcccCCChHHHHHHHHHHHHhhcc
Q 016936 233 SGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTE-AITADALADDEEYEEILEDMREECGK 311 (380)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~L~~~f~~ 311 (380)
... .+ ..+.+-.++ ....+... +.+.| .++.++ .+|+..|++
T Consensus 259 knr-----------------~a----~~s~a~~~k---~~~~p~~r--l~vgnLHfNite-----------~~lr~ifep 301 (549)
T KOG0147|consen 259 KNR-----------------AA----NASPALQGK---GFTGPMRR--LYVGNLHFNITE-----------DMLRGIFEP 301 (549)
T ss_pred HHH-----------------HH----hcccccccc---ccccchhh--hhhcccccCchH-----------HHHhhhccC
Confidence 000 00 000000000 00001111 22232 344443 699999999
Q ss_pred cCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCCeEEEEEecccc
Q 016936 312 YGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 371 (380)
Q Consensus 312 ~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~~~~ 371 (380)
||.|+.|.+..+.++|. ++|+| ||+|.+.++|++|++.|||..+.||.|+|.-.++.
T Consensus 302 fg~Ie~v~l~~d~~tG~-skgfG--fi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 302 FGKIENVQLTKDSETGR-SKGFG--FITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred cccceeeeecccccccc-ccCcc--eEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 99999999999987776 67766 99999999999999999999999999999988763
No 54
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.65 E-value=5.9e-16 Score=139.69 Aligned_cols=172 Identities=22% Similarity=0.404 Sum_probs=140.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcc
Q 016936 151 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 230 (380)
Q Consensus 151 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~ 230 (380)
...++||++|++.++++.|+++|++||.|..|.+++++.+++++||+||+|.+++....++.. ..+.+.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 446999999999999999999999999999999999999999999999999999999999885 5789999999999998
Q ss_pred cCCCCChhHHHHHHHHHHHHHHHHHHHhhhcCccccCCCCCccCCccceEEEEec-cCCcccCCChHHHHHHHHHHHHhh
Q 016936 231 ASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTE-AITADALADDEEYEEILEDMREEC 309 (380)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~L~~~f 309 (380)
++..+....+ ...++.+.+.. ..+..+ +++++.|
T Consensus 84 ~r~~~~~~~~----------------------------------~~~tkkiFvGG~~~~~~e-----------~~~r~yf 118 (311)
T KOG4205|consen 84 SREDQTKVGR----------------------------------HLRTKKIFVGGLPPDTTE-----------EDFKDYF 118 (311)
T ss_pred Cccccccccc----------------------------------ccceeEEEecCcCCCCch-----------HHHhhhh
Confidence 7755533211 11233343333 223322 6999999
Q ss_pred cccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCCeEEEEEeccccc
Q 016936 310 GKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDK 372 (380)
Q Consensus 310 ~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~~~~~ 372 (380)
.+||.|..+.++.+....+ .+|+| ||.|.+++...+++. .+-+.|.|+.+.|--|..+.
T Consensus 119 e~~g~v~~~~~~~d~~~~~-~rgFg--fv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~pk~ 177 (311)
T KOG4205|consen 119 EQFGKVADVVIMYDKTTSR-PRGFG--FVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIPKE 177 (311)
T ss_pred hccceeEeeEEeecccccc-cccce--eeEeccccccceecc-cceeeecCceeeEeeccchh
Confidence 9999999999988876554 55555 999999999999988 58889999999998887744
No 55
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.61 E-value=3.4e-14 Score=118.18 Aligned_cols=179 Identities=21% Similarity=0.298 Sum_probs=124.0
Q ss_pred hhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCC----CcEEEEEeCCHHHHHHHH-HcCCc
Q 016936 28 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE----KKFAFVEMRTVEEASNAM-ALDGI 102 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~----~g~afV~f~~~~~a~~ai-~l~~~ 102 (380)
+.-.-|||||.+||-++...+|+.+|++|-...+ .....+.+. +-+|||.|.+..+|..|+ +|||+
T Consensus 30 ~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEg---------slLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGv 100 (284)
T KOG1457|consen 30 EPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEG---------SLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGV 100 (284)
T ss_pred cccccceeeeccCCcccCHHHHHHHhccCCCccc---------eeeeeccCCCccccceEEEEecchHHHHHHHHHhcCe
Confidence 3455899999999999999999999999843211 222222222 369999999999999999 89999
Q ss_pred eec---CceEEEecCCCCCccccccCCC-CCCCCCccccc----------------------------------------
Q 016936 103 IFE---GVAVRVRRPTDYNPTLAAALGP-GQPSPNLNLAA---------------------------------------- 138 (380)
Q Consensus 103 ~i~---g~~i~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~---------------------------------------- 138 (380)
.|. +..|+|+.++...+......+. ..+++......
T Consensus 101 rFDpE~~stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~ 180 (284)
T KOG1457|consen 101 RFDPETGSTLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKS 180 (284)
T ss_pred eeccccCceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccch
Confidence 885 5789998776544433221111 00000000000
Q ss_pred ----------------ccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEc
Q 016936 139 ----------------VGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQ 202 (380)
Q Consensus 139 ----------------~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~ 202 (380)
...++....++....+|||.||...+++++|+.+|+.|..-..++|... .....||++|+
T Consensus 181 ~~l~a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~----~g~~vaf~~~~ 256 (284)
T KOG1457|consen 181 EALSAPDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR----GGMPVAFADFE 256 (284)
T ss_pred hhhhhhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC----CCcceEeecHH
Confidence 0011112234555679999999999999999999999987666666432 22357999999
Q ss_pred ChhHHHHHHHHhCCCee
Q 016936 203 DPAVTDIACAALNGLKM 219 (380)
Q Consensus 203 ~~~~A~~Ai~~l~g~~~ 219 (380)
..+.|..||..|+|..+
T Consensus 257 ~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 257 EIEQATDAMNHLQGNLL 273 (284)
T ss_pred HHHHHHHHHHHhhccee
Confidence 99999999999988665
No 56
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=6.2e-14 Score=113.29 Aligned_cols=181 Identities=18% Similarity=0.292 Sum_probs=124.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEccc
Q 016936 152 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 231 (380)
Q Consensus 152 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~ 231 (380)
.++|||+|||.++.+.+|.++|-+||.|..|.|... -..-+||||+|+++-+|+.||..-+|..+.|+.|+|+++..
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 479999999999999999999999999999988543 23456999999999999999999999999999999999765
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHhhhcCcc--ccCCCCC-ccCCccceEEEEeccCCcccCCChHHHHHHHHHHHHh
Q 016936 232 SSGQSKTEQESILAQAQQHIAIQKMALQTSGMN--TLGGGMS-LFGETLAKVLCLTEAITADALADDEEYEEILEDMREE 308 (380)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ 308 (380)
-....... ....++.. .++++.. .+.-....-++++....--. | +||+++
T Consensus 83 gr~s~~~~-----------------G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgS------W----QDLKDH 135 (241)
T KOG0105|consen 83 GRSSSDRR-----------------GSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGS------W----QDLKDH 135 (241)
T ss_pred CCcccccc-----------------cccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCc------h----HHHHHH
Confidence 42111100 00000000 1111111 11122223333443222111 1 599999
Q ss_pred hcccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccC--CeEEEEEeccccc
Q 016936 309 CGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFG--GNTVNAFYYPEDK 372 (380)
Q Consensus 309 f~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~--gr~l~v~~~~~~~ 372 (380)
+.+-|.|....+.++. +..|+|...++.+.|+.+|....+. |.+..+....++.
T Consensus 136 mReaGdvCfadv~rDg----------~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv~~~~~ 191 (241)
T KOG0105|consen 136 MREAGDVCFADVQRDG----------VGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRVRGDEN 191 (241)
T ss_pred HHhhCCeeeeeeeccc----------ceeeeeeehhhHHHHHHhhccccccCcCcEeeEEecccCC
Confidence 9999999999987752 4499999999999999999887764 4444444444433
No 57
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.58 E-value=1.3e-14 Score=103.45 Aligned_cols=70 Identities=27% Similarity=0.644 Sum_probs=67.0
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEE
Q 016936 155 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 225 (380)
Q Consensus 155 l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~ 225 (380)
|||+|||.++++++|+++|++||.|..+.+..+ .++..+|+|||+|.+.++|++|++.++|..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999987 4789999999999999999999999999999999986
No 58
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.57 E-value=1e-13 Score=122.54 Aligned_cols=199 Identities=18% Similarity=0.161 Sum_probs=136.5
Q ss_pred cchhhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEE---ecCCCcEEEEEeCCHHHHHHHH-Hc
Q 016936 24 MTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY---INHEKKFAFVEMRTVEEASNAM-AL 99 (380)
Q Consensus 24 ~~~~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~---~~~~~g~afV~f~~~~~a~~ai-~l 99 (380)
+......-...|||.|||.++|-+++.++|+.||.|.....-+. +-+.+. -++-||-|++.|...+++..|+ -|
T Consensus 126 ~~~~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~e--pk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~il 203 (382)
T KOG1548|consen 126 WFNPEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGE--PKVKLYRDNQGKLKGDALCCYIKRESVELAIKIL 203 (382)
T ss_pred ccCcccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCC--eeEEEEecCCCCccCceEEEeecccHHHHHHHHh
Confidence 33334555667999999999999999999999999754322111 111111 1345799999999999999999 79
Q ss_pred CCceecCceEEEecCCCCCccc-cccCCC---CCCCC------CcccccccCCCCCCCCCCCCCEEEEcCC--C--CCCC
Q 016936 100 DGIIFEGVAVRVRRPTDYNPTL-AAALGP---GQPSP------NLNLAAVGLASGAIGGAEGPDRVFVGGL--P--YYFT 165 (380)
Q Consensus 100 ~~~~i~g~~i~v~~~~~~~~~~-~~~~~~---~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~V~nl--p--~~~t 165 (380)
++..++|++|+|..+.-..+.. ...... ..+.. ...+.+...- ....-....++|.++|+ | ...+
T Consensus 204 De~~~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~-~~~sk~r~~~tVi~kn~Ftp~~~~~~ 282 (382)
T KOG1548|consen 204 DEDELRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDR-DDPSKARADRTVILKNMFTPEDFEKN 282 (382)
T ss_pred CcccccCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCc-cccccccCCcEEEeeecCCHHHhccC
Confidence 9999999999999774322211 111000 00000 0001111111 12233455689999998 2 2233
Q ss_pred -------HHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEc
Q 016936 166 -------ETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 229 (380)
Q Consensus 166 -------~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~ 229 (380)
.++|++-.++||.|..|.+.-. .+.|.+.|.|.+.+.|..||+.|+|+.|.||.|.....
T Consensus 283 ~~l~~dlkedl~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~ 349 (382)
T KOG1548|consen 283 PDLLNDLKEDLTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIW 349 (382)
T ss_pred HHHHHHHHHHHHHHHHHhCCcceEEEecc----CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEe
Confidence 2467778889999999988644 35678999999999999999999999999999998864
No 59
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.56 E-value=3.7e-14 Score=128.64 Aligned_cols=202 Identities=18% Similarity=0.292 Sum_probs=134.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHH-hcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEE
Q 016936 148 GAEGPDRVFVGGLPYYFTETQIKELLE-SFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 226 (380)
Q Consensus 148 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v 226 (380)
.+...+.+||+|+|+++.+.+|+++|+ +.|.|+.|.|+.|. .|+++|||.|+|+++|.+++|++.||.+.+.||+|.|
T Consensus 40 ~~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~v 118 (608)
T KOG4212|consen 40 VAARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVV 118 (608)
T ss_pred cccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEE
Confidence 344556799999999999999999999 69999999999995 7999999999999999999999999999999999999
Q ss_pred EEcccCCCCChhHHHHHHHHHHHHHHHHHHHh-----------hhcCccccC--CC----CCcc----------------
Q 016936 227 RRATASSGQSKTEQESILAQAQQHIAIQKMAL-----------QTSGMNTLG--GG----MSLF---------------- 273 (380)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~--~~----~~~~---------------- 273 (380)
+-..... ++.+.. .-+... .+.+.+..+ .+ ....
T Consensus 119 KEd~d~q------~~~~~~-------~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~ 185 (608)
T KOG4212|consen 119 KEDHDEQ------RDQYGR-------IVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMS 185 (608)
T ss_pred eccCchh------hhhhhh-------eeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccc
Confidence 8654311 000000 000000 000000000 00 0000
Q ss_pred ----CCccceEEEE-----------eccCCcccCCChHHHHHHHHHHHHhhcccCCeEEEEecCCCCCCCCCCCccEEEE
Q 016936 274 ----GETLAKVLCL-----------TEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFL 338 (380)
Q Consensus 274 ----~~~~~~~~~l-----------~~~~~~~~~~~~~~~~~~~~~L~~~f~~~G~I~~v~i~~~~~~~~~~~g~g~afV 338 (380)
....-..+.+ ..+.....++-+..|..-..+|.+.|.--|.|+.+.+-.++.. .++ |++.+
T Consensus 186 ~~~~~~~~~~lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG--~s~--G~~vi 261 (608)
T KOG4212|consen 186 NDYNNSSNYNLFGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEG--NSR--GFAVI 261 (608)
T ss_pred cccccchhhhcccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeecccc--ccC--CeeEE
Confidence 0000000000 0111111222233333334699999999999999998776643 244 57799
Q ss_pred EeechhhHHHHHHHHcCcccCCeEEEEEe
Q 016936 339 EYYDAVGCATAKNALSGRKFGGNTVNAFY 367 (380)
Q Consensus 339 ~f~~~~~A~~A~~~l~g~~i~gr~l~v~~ 367 (380)
+|+++-+|.+|+..|++.-+..++..+.+
T Consensus 262 ~y~hpveavqaIsml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 262 EYDHPVEAVQAISMLDRQGLFDRRMTVRL 290 (608)
T ss_pred EecchHHHHHHHHhhccCCCccccceeec
Confidence 99999999999999998777778777766
No 60
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=1.7e-14 Score=122.40 Aligned_cols=164 Identities=21% Similarity=0.299 Sum_probs=127.4
Q ss_pred ceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceecCceEEE
Q 016936 33 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRV 111 (380)
Q Consensus 33 ~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~g~~i~v 111 (380)
.+|||++||+.+.+.||..||..||.+ .++. .-.||+||+|.+..+|.-|+ .+++..+.|-.+-+
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~------------~d~~--mk~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vv 67 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKI------------PDAD--MKNGFGFVEFEDPRDADDAVHDLDGKELCGERLVV 67 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccc------------ccce--eecccceeccCchhhhhcccchhcCceecceeeee
Confidence 579999999999999999999999984 3332 34578899999999999999 89999999977888
Q ss_pred ecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCC
Q 016936 112 RRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTG 191 (380)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~ 191 (380)
.|+...+.......+. ... +....-..+......+.+.+++..+.+.+|.++|+.+|.+....+
T Consensus 68 e~~r~~~~~~g~~~~g----~r~-----~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~------- 131 (216)
T KOG0106|consen 68 EHARGKRRGRGRPRGG----DRR-----SDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA------- 131 (216)
T ss_pred ecccccccccCCCCCC----Ccc-----chhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh-------
Confidence 8877644332110000 000 001111122445578999999999999999999999999955544
Q ss_pred CCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEE
Q 016936 192 NSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 227 (380)
Q Consensus 192 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~ 227 (380)
..+++||+|.+.++|.+|+..+++..+.++.|.+.
T Consensus 132 -~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~ 166 (216)
T KOG0106|consen 132 -RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVE 166 (216)
T ss_pred -hccccceeehhhhhhhhcchhccchhhcCceeeec
Confidence 23589999999999999999999999999999994
No 61
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=8.6e-14 Score=117.53 Aligned_cols=82 Identities=29% Similarity=0.441 Sum_probs=78.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcc
Q 016936 151 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 230 (380)
Q Consensus 151 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~ 230 (380)
...+|-|.||+.++++++|.++|.+||.|.++.+.+|+.+|.++|||||.|.++++|.+||+.|||.-+..-.|+|+|+.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 44689999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cC
Q 016936 231 AS 232 (380)
Q Consensus 231 ~~ 232 (380)
++
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 64
No 62
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=6e-14 Score=123.13 Aligned_cols=88 Identities=27% Similarity=0.564 Sum_probs=80.3
Q ss_pred CCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeE
Q 016936 144 GAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKT 223 (380)
Q Consensus 144 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 223 (380)
..+.....+++|+|.|||+...+.||+.+|.+||.|.+|.|+.+ ...+||||||.|++.++|++|-++|||..+.||+
T Consensus 88 t~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRk 165 (376)
T KOG0125|consen 88 TNSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRK 165 (376)
T ss_pred CcCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceE
Confidence 34455677899999999999999999999999999999999987 3568999999999999999999999999999999
Q ss_pred EEEEEcccCC
Q 016936 224 LTVRRATASS 233 (380)
Q Consensus 224 i~v~~~~~~~ 233 (380)
|+|+.+..+.
T Consensus 166 IEVn~ATarV 175 (376)
T KOG0125|consen 166 IEVNNATARV 175 (376)
T ss_pred EEEeccchhh
Confidence 9999988764
No 63
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.52 E-value=6.4e-14 Score=114.16 Aligned_cols=85 Identities=19% Similarity=0.380 Sum_probs=69.1
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceec
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFE 105 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~ 105 (380)
.....+++|||+|||+++++++|+++|++||.|... .++.+....+++|||||+|.+.++|+.|+ .+++..|.
T Consensus 29 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v------~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~ 102 (144)
T PLN03134 29 SLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDA------KVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELN 102 (144)
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEE------EEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 455678899999999999999999999999984321 01111123457899999999999999999 79999999
Q ss_pred CceEEEecCCCC
Q 016936 106 GVAVRVRRPTDY 117 (380)
Q Consensus 106 g~~i~v~~~~~~ 117 (380)
|++|+|.++...
T Consensus 103 Gr~l~V~~a~~~ 114 (144)
T PLN03134 103 GRHIRVNPANDR 114 (144)
T ss_pred CEEEEEEeCCcC
Confidence 999999997654
No 64
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.50 E-value=1.3e-13 Score=98.47 Aligned_cols=70 Identities=27% Similarity=0.580 Sum_probs=65.0
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEE
Q 016936 155 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 225 (380)
Q Consensus 155 l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~ 225 (380)
|||+|||+.+++++|+++|+.||.|..+++..+++ ++.+|+|||+|.+.++|.+|++.+++..+.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999976 89999999999999999999999999999999885
No 65
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=1e-13 Score=116.74 Aligned_cols=78 Identities=27% Similarity=0.571 Sum_probs=72.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEccc
Q 016936 153 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 231 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~ 231 (380)
++|||++|+|.++.++|+++|++||.|.+..++.|+.+|+++|||||.|.+.++|.+|++.- .-.|+||+..|+.+..
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccchhhh
Confidence 58999999999999999999999999999999999999999999999999999999999863 4688999999998765
No 66
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.45 E-value=1.3e-12 Score=108.91 Aligned_cols=203 Identities=16% Similarity=0.184 Sum_probs=121.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEee-CCCCCCCceEEEEEEcChhHHHHHHHHhCCCee---CCeEE
Q 016936 149 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVK-DRDTGNSKGYGFCVYQDPAVTDIACAALNGLKM---GDKTL 224 (380)
Q Consensus 149 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~-~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~~i 224 (380)
...-++|||.+||-++...+|+.+|+.|-.-+.+.|-. ++...-.+.+|||.|.+..+|..|+.+|||..| .+..+
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 44568999999999999999999999987777665533 333334567999999999999999999999988 47889
Q ss_pred EEEEcccCCCCChhHHHH------HHH------HHHHHHHHHHHHhhhcCccccCCCCCccCCccceEE-----------
Q 016936 225 TVRRATASSGQSKTEQES------ILA------QAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVL----------- 281 (380)
Q Consensus 225 ~v~~~~~~~~~~~~~~~~------~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 281 (380)
+++.++.+...+++.... ... ...+...++-..........+-.+.......+....
T Consensus 111 hiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~ 190 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKA 190 (284)
T ss_pred EeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcC
Confidence 999988765443322111 000 000000000000000000000000000000000000
Q ss_pred -----EE-------eccCC-cccCCChHHHHHHHHHHHHhhcccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHH
Q 016936 282 -----CL-------TEAIT-ADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCAT 348 (380)
Q Consensus 282 -----~l-------~~~~~-~~~~~~~~~~~~~~~~L~~~f~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~ 348 (380)
.+ ...-. -+-++-|.-.+.+++.|+.+|+.|......+|-.. . |+-+||++|.+.+.|..
T Consensus 191 P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~-----g~~vaf~~~~~~~~at~ 263 (284)
T KOG1457|consen 191 PSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--G-----GMPVAFADFEEIEQATD 263 (284)
T ss_pred CcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--C-----CcceEeecHHHHHHHHH
Confidence 00 00000 00011122223355799999999999988888442 2 34589999999999999
Q ss_pred HHHHHcCccc
Q 016936 349 AKNALSGRKF 358 (380)
Q Consensus 349 A~~~l~g~~i 358 (380)
|+..|+|..+
T Consensus 264 am~~lqg~~~ 273 (284)
T KOG1457|consen 264 AMNHLQGNLL 273 (284)
T ss_pred HHHHhhccee
Confidence 9999999876
No 67
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=2.8e-13 Score=102.99 Aligned_cols=79 Identities=25% Similarity=0.405 Sum_probs=75.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEc
Q 016936 151 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 229 (380)
Q Consensus 151 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~ 229 (380)
.+.+|||+||++.+++++|+++|+.+|.|..|.+=.|+.+..+.|||||+|.+.++|+.|+..++|..+..++|++.|.
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 3469999999999999999999999999999999888888899999999999999999999999999999999999985
No 68
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.45 E-value=3.8e-12 Score=117.84 Aligned_cols=171 Identities=16% Similarity=0.234 Sum_probs=124.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcc
Q 016936 151 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 230 (380)
Q Consensus 151 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~ 230 (380)
...-|-+++|||.+|++||+++|+.++ |+.+.+.+. +|+..|-|||+|.+.+++++|+++ +...+..|-|+|-.+.
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTAG 84 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEccC
Confidence 346799999999999999999999865 666777765 799999999999999999999995 8899999999998875
Q ss_pred cCCCCChhHHHHHHHHHHHHHHHHHHHhhhcCccccCCCCCccCCccceEEEEec-cCCcccCCChHHHHHHHHHHHHhh
Q 016936 231 ASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTE-AITADALADDEEYEEILEDMREEC 309 (380)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~L~~~f 309 (380)
.....-. +. ........+.-++.|.. ++.++ ++||.++|
T Consensus 85 ~~e~d~~-------------------~~----------~~g~~s~~~d~vVRLRGLPfsct-----------e~dI~~FF 124 (510)
T KOG4211|consen 85 GAEADWV-------------------MR----------PGGPNSSANDGVVRLRGLPFSCT-----------EEDIVEFF 124 (510)
T ss_pred Ccccccc-------------------cc----------CCCCCCCCCCceEEecCCCccCc-----------HHHHHHHh
Confidence 4321000 00 00000112444566665 33443 47999999
Q ss_pred cccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCCeEEEEEecc
Q 016936 310 GKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYP 369 (380)
Q Consensus 310 ~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~~ 369 (380)
+.---|....++...+.++ -.|-|||+|++.+.|++|+.. |...|+.|-|.|--+.
T Consensus 125 aGL~Iv~~gi~l~~d~rgR---~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 125 AGLEIVPDGILLPMDQRGR---PTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRSS 180 (510)
T ss_pred cCCcccccceeeeccCCCC---cccceEEEecCHHHHHHHHHH-HHHhhccceEEeehhH
Confidence 9876666644344443443 347889999999999999996 8888999988886554
No 69
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=4.5e-13 Score=113.82 Aligned_cols=168 Identities=21% Similarity=0.375 Sum_probs=120.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 016936 153 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 232 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~ 232 (380)
..+||++||+.+.+.+|..+|..||.+..+.+.. ||+||+|.+.-+|..|+..++++.|.|-.+.|.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 3799999999999999999999999999887743 48999999999999999999999999999888887643
Q ss_pred CCCC-hhHHHHHHHHHHHHHHHHHHHhhhcCccccC-CCCCccCCccceEEEEeccCCcccCCChHHHHHHHHHHHHhhc
Q 016936 233 SGQS-KTEQESILAQAQQHIAIQKMALQTSGMNTLG-GGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECG 310 (380)
Q Consensus 233 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~f~ 310 (380)
.... .+. +| .-.+ ......+......+++.+. .......+|.+.|+
T Consensus 74 ~~~~g~~~---------------------~g-~r~~~~~~~~~p~~s~~r~~~~~~----------~~r~~~qdl~d~~~ 121 (216)
T KOG0106|consen 74 RRGRGRPR---------------------GG-DRRSDSRRYRPPSRTHFRLIVRNL----------SLRVSWQDLKDHFR 121 (216)
T ss_pred ccccCCCC---------------------CC-CccchhhccCCcccccceeeeccc----------hhhhhHHHHhhhhc
Confidence 1110 000 00 0000 0000001111222233331 11222269999999
Q ss_pred ccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCCeEEEEEecccc
Q 016936 311 KYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 371 (380)
Q Consensus 311 ~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~~~~ 371 (380)
++|.+....+.. +.+||+|.+.++|.+|+..|+|..+.+++|.+.+...+
T Consensus 122 ~~g~~~~~~~~~-----------~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~~~d 171 (216)
T KOG0106|consen 122 PAGEVTYVDARR-----------NFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKNSRD 171 (216)
T ss_pred ccCCCchhhhhc-----------cccceeehhhhhhhhcchhccchhhcCceeeecccCcc
Confidence 999996655522 36699999999999999999999999999999655543
No 70
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.43 E-value=1.2e-10 Score=104.24 Aligned_cols=300 Identities=15% Similarity=0.124 Sum_probs=181.9
Q ss_pred EcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCc-EEEEEeCCHHHHHHHH-HcCCceecC--ceEEEe
Q 016936 37 VGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKK-FAFVEMRTVEEASNAM-ALDGIIFEG--VAVRVR 112 (380)
Q Consensus 37 V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g-~afV~f~~~~~a~~ai-~l~~~~i~g--~~i~v~ 112 (380)
|-|=-+.+|-+-|+......|. |..+.+.+..| .|.|+|++.+.|++|- .|||..|.- ..|+|+
T Consensus 127 IlNp~YpItvDVly~Icnp~Gk------------VlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIe 194 (494)
T KOG1456|consen 127 ILNPQYPITVDVLYTICNPQGK------------VLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIE 194 (494)
T ss_pred eecCccccchhhhhhhcCCCCc------------eEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccceeEEEE
Confidence 4455566899999999999988 66666655555 6999999999999999 899988753 678888
Q ss_pred cCCCCCcccc---------------ccCCCCC------CC-CC-----ccccc--ccCCC--------------------
Q 016936 113 RPTDYNPTLA---------------AALGPGQ------PS-PN-----LNLAA--VGLAS-------------------- 143 (380)
Q Consensus 113 ~~~~~~~~~~---------------~~~~~~~------~~-~~-----~~~~~--~~~~~-------------------- 143 (380)
+++....+.- ...++.. .. .. .++.. .+..+
T Consensus 195 yAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~ 274 (494)
T KOG1456|consen 195 YAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRD 274 (494)
T ss_pred ecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCcccccc
Confidence 7654332210 0000000 00 00 00000 00000
Q ss_pred ----CCCCCCCCCCEEEEcCCCCC-CCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCe
Q 016936 144 ----GAIGGAEGPDRVFVGGLPYY-FTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLK 218 (380)
Q Consensus 144 ----~~~~~~~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~ 218 (380)
..+.+.....-++|-+|... .+-+.|.++|-.||.|++|++++-+ .|.|+|++.+....++|+..||+..
T Consensus 275 ~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~ 349 (494)
T KOG1456|consen 275 GRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIP 349 (494)
T ss_pred CCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCc
Confidence 11123344467889999654 5667899999999999999999875 3689999999999999999999999
Q ss_pred eCCeEEEEEEcccCCCCChhHH-HHHHHHHHHHHHHHHHHhhhcCccccCCCCCccCCccceEEEEeccCCcccCCChHH
Q 016936 219 MGDKTLTVRRATASSGQSKTEQ-ESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEE 297 (380)
Q Consensus 219 ~~g~~i~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 297 (380)
+.|.+|.|..++...-.+-..- -.......+.....+- .....+....-..-..+++++..=| ....
T Consensus 350 lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkN----nRFssp~qAsKNrIq~Ps~vLHffN---aP~~----- 417 (494)
T KOG1456|consen 350 LFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKN----NRFSSPEQASKNRIQPPSNVLHFFN---APLG----- 417 (494)
T ss_pred cccceEEEeeccccccccCCceecCCCCcchhhcccccc----cccCChhHhhcccccCCcceeEEec---CCCc-----
Confidence 9999999998765431111000 0000000000000000 0000000000001134455554433 1111
Q ss_pred HHHHHHHHHHhhcccCC-eEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCC------eEEEEEeccc
Q 016936 298 YEEILEDMREECGKYGT-LVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGG------NTVNAFYYPE 370 (380)
Q Consensus 298 ~~~~~~~L~~~f~~~G~-I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~g------r~l~v~~~~~ 370 (380)
.+++.|..+|..-+. -.+++++..+ +.+.+ .| .++|.+.++|..|+..+|.+.|.+ -.|++.|++.
T Consensus 418 --vtEe~l~~i~nek~v~~~svkvFp~k-serSs--sG--llEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts 490 (494)
T KOG1456|consen 418 --VTEEQLIGICNEKDVPPTSVKVFPLK-SERSS--SG--LLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTS 490 (494)
T ss_pred --cCHHHHHHHhhhcCCCcceEEeeccc-ccccc--cc--eeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeeccc
Confidence 122577777765442 4566666544 33322 24 999999999999999999999877 4677777766
Q ss_pred cc
Q 016936 371 DK 372 (380)
Q Consensus 371 ~~ 372 (380)
..
T Consensus 491 ~~ 492 (494)
T KOG1456|consen 491 KH 492 (494)
T ss_pred cc
Confidence 54
No 71
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.43 E-value=4e-13 Score=110.62 Aligned_cols=85 Identities=24% Similarity=0.425 Sum_probs=80.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEE
Q 016936 149 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 228 (380)
Q Consensus 149 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~ 228 (380)
.++...|.|-||.+.++.++|+.+|++||.|..|.|++|+-+++++|||||.|....+|+.|+++|+|..+.|+.|+|++
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 45667999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccCC
Q 016936 229 ATASS 233 (380)
Q Consensus 229 ~~~~~ 233 (380)
|....
T Consensus 90 arygr 94 (256)
T KOG4207|consen 90 ARYGR 94 (256)
T ss_pred hhcCC
Confidence 86543
No 72
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.43 E-value=9.7e-13 Score=114.75 Aligned_cols=75 Identities=21% Similarity=0.352 Sum_probs=69.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEccc
Q 016936 153 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 231 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~ 231 (380)
++|||+|||+.+++++|+++|+.||.|.+|.|+.++ .++|||||+|.++++|+.|+. |+|..|.|+.|+|.++..
T Consensus 5 rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~---~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 5 RTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN---ERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC---CCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 699999999999999999999999999999998874 357899999999999999996 899999999999999764
No 73
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.41 E-value=8e-13 Score=115.26 Aligned_cols=77 Identities=25% Similarity=0.356 Sum_probs=68.5
Q ss_pred ccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecC---CCcEEEEEeCCHHHHHHHHHcCCceecCc
Q 016936 31 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH---EKKFAFVEMRTVEEASNAMALDGIIFEGV 107 (380)
Q Consensus 31 ~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~---~~g~afV~f~~~~~a~~ai~l~~~~i~g~ 107 (380)
..++|||+|||+.+++++|+++|+.||. |.++.+.. .+|||||+|.++++|..|+.|+|..|.|+
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~------------I~~V~I~~d~~~~GfAFVtF~d~eaAe~AllLnG~~l~gr 70 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGD------------IEYVEMQSENERSQIAYVTFKDPQGAETALLLSGATIVDQ 70 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEeecCCCCCEEEEEeCcHHHHHHHHHhcCCeeCCc
Confidence 3689999999999999999999999998 56666543 46999999999999999999999999999
Q ss_pred eEEEecCCCCCc
Q 016936 108 AVRVRRPTDYNP 119 (380)
Q Consensus 108 ~i~v~~~~~~~~ 119 (380)
.|+|.++.++..
T Consensus 71 ~V~Vt~a~~~~~ 82 (260)
T PLN03120 71 SVTITPAEDYQL 82 (260)
T ss_pred eEEEEeccCCCC
Confidence 999999877653
No 74
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=6.9e-12 Score=91.84 Aligned_cols=80 Identities=23% Similarity=0.453 Sum_probs=72.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEE
Q 016936 149 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 228 (380)
Q Consensus 149 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~ 228 (380)
+...+.|||+|||+++|.++..++|.+||+|..+++=.. ...+|.|||.|++..+|.+|++.|+|..+.++.+.|-+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~---k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT---KETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCc---cCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 445578999999999999999999999999999998543 55789999999999999999999999999999999998
Q ss_pred ccc
Q 016936 229 ATA 231 (380)
Q Consensus 229 ~~~ 231 (380)
-.+
T Consensus 92 yq~ 94 (124)
T KOG0114|consen 92 YQP 94 (124)
T ss_pred cCH
Confidence 643
No 75
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.39 E-value=7.3e-13 Score=94.36 Aligned_cols=64 Identities=36% Similarity=0.658 Sum_probs=56.6
Q ss_pred EEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec-----CCCcEEEEEeCCHHHHHHHH-HcCCceecCce
Q 016936 35 VYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN-----HEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 108 (380)
Q Consensus 35 v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~-----~~~g~afV~f~~~~~a~~ai-~l~~~~i~g~~ 108 (380)
|||+|||+++++++|+++|++||. +..+.+. +.+++|||+|.+.++|.+|+ .+++..+.|++
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~------------i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ 68 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGK------------IESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRK 68 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTST------------EEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhh------------cccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccC
Confidence 799999999999999999999998 4444433 34799999999999999999 69999999999
Q ss_pred EE
Q 016936 109 VR 110 (380)
Q Consensus 109 i~ 110 (380)
|+
T Consensus 69 ir 70 (70)
T PF00076_consen 69 IR 70 (70)
T ss_dssp EE
T ss_pred cC
Confidence 86
No 76
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.39 E-value=1.8e-12 Score=88.03 Aligned_cols=56 Identities=23% Similarity=0.438 Sum_probs=50.6
Q ss_pred HHHhhcccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCCeEEEEEec
Q 016936 305 MREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYY 368 (380)
Q Consensus 305 L~~~f~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~ 368 (380)
|+++|++||+|.++.+.+.. .++|||+|.+.++|.+|++.|||..++|++|+|+|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~--------~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK--------RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS--------TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999998765 158899999999999999999999999999999986
No 77
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.37 E-value=6.2e-13 Score=118.92 Aligned_cols=191 Identities=21% Similarity=0.219 Sum_probs=135.0
Q ss_pred cceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec--CCCcEEEEEeCCHHHHHHHHHcCCceecCceE
Q 016936 32 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN--HEKKFAFVEMRTVEEASNAMALDGIIFEGVAV 109 (380)
Q Consensus 32 ~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~--~~~g~afV~f~~~~~a~~ai~l~~~~i~g~~i 109 (380)
.-.|.+++||.++++.|+.+||..-..+.++ ++-|+-++-. +-.|-|||.|..+++|+.|+..|...+..|-|
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g-----~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYI 235 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGG-----TEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYI 235 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCC-----ccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHH
Confidence 3468899999999999999999855554322 3346666543 34589999999999999999888888888888
Q ss_pred EEecCCCCCc--cccccCC-CCCCCCCccccccc-CCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCC-eeE--E
Q 016936 110 RVRRPTDYNP--TLAAALG-PGQPSPNLNLAAVG-LASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGT-LHG--F 182 (380)
Q Consensus 110 ~v~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~-i~~--v 182 (380)
.+.++...+. ..+.... +-.+.. ...... ....-.-......+|.+++||+..+.++|.++|..|-. |.. |
T Consensus 236 ElFRSTaaEvqqvlnr~~s~pLi~~~--~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gV 313 (508)
T KOG1365|consen 236 ELFRSTAAEVQQVLNREVSEPLIPGL--TSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGV 313 (508)
T ss_pred HHHHHhHHHHHHHHHhhccccccCCC--CCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhccccee
Confidence 8766543211 1111100 000000 000000 01111112333568999999999999999999999876 443 7
Q ss_pred EEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcc
Q 016936 183 DLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 230 (380)
Q Consensus 183 ~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~ 230 (380)
+++.+. .|+..|-|||+|.+.+.|..|+.+.+.+...+|.|+|-.++
T Consensus 314 Hmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 314 HMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred EEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeecc
Confidence 787774 69999999999999999999999988777789999998864
No 78
>smart00362 RRM_2 RNA recognition motif.
Probab=99.37 E-value=4.9e-12 Score=90.01 Aligned_cols=72 Identities=39% Similarity=0.691 Sum_probs=67.2
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEE
Q 016936 154 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 227 (380)
Q Consensus 154 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~ 227 (380)
+|+|+|||..++.++|+++|++||.+..+.+..++ +.++|+|||+|.+.++|++|+..+++..+.|+.+.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999998875 7788999999999999999999999999999998873
No 79
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=1.4e-12 Score=99.18 Aligned_cols=77 Identities=25% Similarity=0.414 Sum_probs=67.2
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec------CCCcEEEEEeCCHHHHHHHH-Hc
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN------HEKKFAFVEMRTVEEASNAM-AL 99 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~------~~~g~afV~f~~~~~a~~ai-~l 99 (380)
.+.+.+|||||+||+.-++|++|+++|+++|.| ..+.++ .-.|||||+|-+.++|+.|+ -+
T Consensus 31 ~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~i------------rriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryi 98 (153)
T KOG0121|consen 31 EALRKSCTVYVGNLSFYTTEEQIYELFSKCGDI------------RRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYI 98 (153)
T ss_pred HHHhhcceEEEeeeeeeecHHHHHHHHHhccch------------heeEeccccCCcCccceEEEEEecchhHHHHHHHh
Confidence 356899999999999999999999999999985 334333 23599999999999999999 79
Q ss_pred CCceecCceEEEecCC
Q 016936 100 DGIIFEGVAVRVRRPT 115 (380)
Q Consensus 100 ~~~~i~g~~i~v~~~~ 115 (380)
++..+..++|++.|.-
T Consensus 99 sgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 99 SGTRLDDRPIRIDWDA 114 (153)
T ss_pred ccCcccccceeeeccc
Confidence 9999999999999843
No 80
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.34 E-value=1.9e-13 Score=110.25 Aligned_cols=80 Identities=34% Similarity=0.674 Sum_probs=76.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 016936 153 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 232 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~ 232 (380)
.-|||+|||+.+|+.||.-+|++||.|..|.|++|+.+|+++||||+.|++--+...|+..|||..+.||.|+|......
T Consensus 36 A~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~Y 115 (219)
T KOG0126|consen 36 AYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSNY 115 (219)
T ss_pred eEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecccc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999986543
No 81
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=8.5e-12 Score=118.43 Aligned_cols=191 Identities=16% Similarity=0.240 Sum_probs=135.5
Q ss_pred hcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceecCc
Q 016936 29 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 107 (380)
Q Consensus 29 ~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~g~ 107 (380)
.-..++++|++||...++.++.+.+..||.+.. ...+.+..++-++||||.+|.++.....|+ .|||+.+.++
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~------f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~ 359 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKA------FRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDK 359 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchh------heeecccccccccceeeeeeeCCcchhhhhcccchhhhcCc
Confidence 455678999999999999999999999999754 445666666678999999999999999999 7999999999
Q ss_pred eEEEecCCCCCccccccCCCCCCCCCcccccccCCCC-CCCCCCCCCEEEEcCC--CCCCCH--------HHHHHHHHhc
Q 016936 108 AVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASG-AIGGAEGPDRVFVGGL--PYYFTE--------TQIKELLESF 176 (380)
Q Consensus 108 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~V~nl--p~~~t~--------~~l~~~F~~~ 176 (380)
++.++.+.............+. ....+.... ........+.+.+.|+ |..+.. ++++..+.+|
T Consensus 360 ~lvvq~A~~g~~~~~~~~~~~~------~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~ 433 (500)
T KOG0120|consen 360 KLVVQRAIVGASNANVNFNISQ------SQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKF 433 (500)
T ss_pred eeEeehhhccchhccccCCccc------cccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhccc
Confidence 9999987654332211111000 001111111 0111122234445554 222111 3556677789
Q ss_pred CCeeEEEEeeC-C--CCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEccc
Q 016936 177 GTLHGFDLVKD-R--DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 231 (380)
Q Consensus 177 G~i~~v~l~~~-~--~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~ 231 (380)
|.|..|.+++. . ...-..|..||+|.+.+++++|++.|+|..|.++.+...+...
T Consensus 434 g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 434 GAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred CceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 99999999876 2 2234667899999999999999999999999999999998643
No 82
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=4.8e-12 Score=101.79 Aligned_cols=76 Identities=21% Similarity=0.430 Sum_probs=69.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEccc
Q 016936 152 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 231 (380)
Q Consensus 152 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~ 231 (380)
.++|||+||+..+++.||..+|..||.|..|-+-+. +.|||||+|+++-+|+.|+..|+|..|.|..|+|+.+.-
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 369999999999999999999999999998877554 468999999999999999999999999999999998754
Q ss_pred C
Q 016936 232 S 232 (380)
Q Consensus 232 ~ 232 (380)
.
T Consensus 85 ~ 85 (195)
T KOG0107|consen 85 R 85 (195)
T ss_pred C
Confidence 3
No 83
>smart00360 RRM RNA recognition motif.
Probab=99.33 E-value=8.5e-12 Score=88.40 Aligned_cols=71 Identities=38% Similarity=0.700 Sum_probs=66.4
Q ss_pred EcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEE
Q 016936 157 VGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 227 (380)
Q Consensus 157 V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~ 227 (380)
|+|||..+++++|+++|++||.|..+.+..++.++.++|+|||+|.+.++|..|+..+++..+.|+.+.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57899999999999999999999999999887678999999999999999999999999999999998873
No 84
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.32 E-value=5.2e-12 Score=111.13 Aligned_cols=88 Identities=18% Similarity=0.238 Sum_probs=72.1
Q ss_pred CccceEEEEeccCCcccCCChHHHHHHHHHHHHhhcccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHc
Q 016936 275 ETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALS 354 (380)
Q Consensus 275 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~f~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~ 354 (380)
....+.+.++|+...--. .||+.+|.+||.|.+|.|+.+++. +||+| ||.|++++||.+|-++||
T Consensus 93 ~~~pkRLhVSNIPFrFRd----------pDL~aMF~kfG~VldVEIIfNERG---SKGFG--FVTmen~~dadRARa~LH 157 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRD----------PDLRAMFEKFGKVLDVEIIFNERG---SKGFG--FVTMENPADADRARAELH 157 (376)
T ss_pred CCCCceeEeecCCccccC----------ccHHHHHHhhCceeeEEEEeccCC---CCccc--eEEecChhhHHHHHHHhh
Confidence 444566777775432111 499999999999999999997654 77777 999999999999999999
Q ss_pred CcccCCeEEEEEecccccccccc
Q 016936 355 GRKFGGNTVNAFYYPEDKYFNKD 377 (380)
Q Consensus 355 g~~i~gr~l~v~~~~~~~~~~~~ 377 (380)
|.++.||+|.|.-++...+.+++
T Consensus 158 gt~VEGRkIEVn~ATarV~n~K~ 180 (376)
T KOG0125|consen 158 GTVVEGRKIEVNNATARVHNKKK 180 (376)
T ss_pred cceeeceEEEEeccchhhccCCc
Confidence 99999999999999987665543
No 85
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=7.3e-12 Score=108.87 Aligned_cols=79 Identities=28% Similarity=0.519 Sum_probs=75.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcc
Q 016936 152 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 230 (380)
Q Consensus 152 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~ 230 (380)
-+||||.-|++++++.+|+..|+.||.|..|+|+.++.+|+++|||||+|+++-+-.+|.+..+|..|.|+.|.|.+-.
T Consensus 101 y~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvER 179 (335)
T KOG0113|consen 101 YKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVER 179 (335)
T ss_pred cceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEecc
Confidence 3699999999999999999999999999999999999999999999999999999999999999999999999998743
No 86
>PLN03213 repressor of silencing 3; Provisional
Probab=99.32 E-value=7.2e-12 Score=115.65 Aligned_cols=76 Identities=17% Similarity=0.357 Sum_probs=70.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcCh--hHHHHHHHHhCCCeeCCeEEEEEEcc
Q 016936 153 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDP--AVTDIACAALNGLKMGDKTLTVRRAT 230 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~--~~A~~Ai~~l~g~~~~g~~i~v~~~~ 230 (380)
-+|||+||++.+++++|...|..||.|..|.|++. +| +|||||+|.+. .++.+||..|||..+.|+.|+|..|+
T Consensus 11 MRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 11 VRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 58999999999999999999999999999999954 66 89999999988 78999999999999999999999986
Q ss_pred cC
Q 016936 231 AS 232 (380)
Q Consensus 231 ~~ 232 (380)
+.
T Consensus 87 P~ 88 (759)
T PLN03213 87 EH 88 (759)
T ss_pred HH
Confidence 53
No 87
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.32 E-value=6.9e-12 Score=107.63 Aligned_cols=78 Identities=23% Similarity=0.258 Sum_probs=68.8
Q ss_pred ccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecC---CCcEEEEEeCCHHHHHHHHHcCCceecCc
Q 016936 31 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH---EKKFAFVEMRTVEEASNAMALDGIIFEGV 107 (380)
Q Consensus 31 ~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~---~~g~afV~f~~~~~a~~ai~l~~~~i~g~ 107 (380)
...+|||+||++.+|++||++||+.||. |.++.+.. .+++|||+|.++++|..|+.|+|..|.++
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~------------I~~V~I~~D~et~gfAfVtF~d~~aaetAllLnGa~l~d~ 71 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGA------------IEHVEIIRSGEYACTAYVTFKDAYALETAVLLSGATIVDQ 71 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCC------------eEEEEEecCCCcceEEEEEECCHHHHHHHHhcCCCeeCCc
Confidence 4579999999999999999999999998 55565543 45899999999999999999999999999
Q ss_pred eEEEecCCCCCcc
Q 016936 108 AVRVRRPTDYNPT 120 (380)
Q Consensus 108 ~i~v~~~~~~~~~ 120 (380)
+|.|.+...++..
T Consensus 72 ~I~It~~~~y~~~ 84 (243)
T PLN03121 72 RVCITRWGQYEDE 84 (243)
T ss_pred eEEEEeCcccccC
Confidence 9999987776653
No 88
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.32 E-value=1.3e-11 Score=105.94 Aligned_cols=74 Identities=16% Similarity=0.298 Sum_probs=68.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcc
Q 016936 153 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 230 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~ 230 (380)
.+|||+||++.+|+++|+++|+.||.|..|+|.++ +..+++|||+|.++++|+.|+. |+|..|.+++|.|....
T Consensus 6 ~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 6 YTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred eEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 69999999999999999999999999999999987 4556899999999999999996 89999999999999854
No 89
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=4.2e-12 Score=97.47 Aligned_cols=84 Identities=26% Similarity=0.370 Sum_probs=78.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEc
Q 016936 150 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 229 (380)
Q Consensus 150 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~ 229 (380)
.....|||.++...+++++|.+.|..||+|..+.|-.|+.+|-.+|||+|+|.+.++|+.|+..+||..+.|..|.|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 34468999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred ccCC
Q 016936 230 TASS 233 (380)
Q Consensus 230 ~~~~ 233 (380)
..+.
T Consensus 150 Fv~g 153 (170)
T KOG0130|consen 150 FVKG 153 (170)
T ss_pred EecC
Confidence 7653
No 90
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.30 E-value=4.4e-11 Score=114.66 Aligned_cols=195 Identities=12% Similarity=0.058 Sum_probs=142.5
Q ss_pred hcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCC-CcEEEEEeCCHHHHHHHHHcCCceecCc
Q 016936 29 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE-KKFAFVEMRTVEEASNAMALDGIIFEGV 107 (380)
Q Consensus 29 ~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~-~g~afV~f~~~~~a~~ai~l~~~~i~g~ 107 (380)
..+.+.+-+++++...++.|+++||-..-. ..+. +.......+ .|-++|+|....++++|+..+.+.+..+
T Consensus 308 v~d~~y~~~~gm~fn~~~nd~rkfF~g~~~-------~~~~-l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R 379 (944)
T KOG4307|consen 308 VSDKYYNNYKGMEFNNDFNDGRKFFPGRNA-------QSTD-LSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNR 379 (944)
T ss_pred cchhheeeecccccccccchhhhhcCcccc-------cccc-hhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhc
Confidence 477899999999999999999999875421 1111 222223333 6999999999999999999999999999
Q ss_pred eEEEecCCCCCccccccCCCCCCCCCc-------cccc---ccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcC
Q 016936 108 AVRVRRPTDYNPTLAAALGPGQPSPNL-------NLAA---VGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFG 177 (380)
Q Consensus 108 ~i~v~~~~~~~~~~~~~~~~~~~~~~~-------~~~~---~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G 177 (380)
.+++..+.+.+...+.......+.... .-.. .+..............|||..||..+++.++.+.|+.--
T Consensus 380 ~~q~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~ 459 (944)
T KOG4307|consen 380 PFQTGPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAA 459 (944)
T ss_pred ceeecCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhh
Confidence 999998887776654332222111000 0000 011111223344557999999999999999999999877
Q ss_pred CeeE-EEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 016936 178 TLHG-FDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 232 (380)
Q Consensus 178 ~i~~-v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~ 232 (380)
.|+. |.|.+.+ +++-++.|||.|.+++.+.+|...-+.++++.+.|+|......
T Consensus 460 ~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~ 514 (944)
T KOG4307|consen 460 AVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADY 514 (944)
T ss_pred hhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEeechhhH
Confidence 7766 8887776 6888999999999999999998866667888899999876544
No 91
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.30 E-value=2.5e-11 Score=110.51 Aligned_cols=80 Identities=35% Similarity=0.710 Sum_probs=76.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEccc
Q 016936 152 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 231 (380)
Q Consensus 152 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~ 231 (380)
..+|||+|||..+++++|+++|..||.|..+.+..++.++.++|+|||.|.+.++|..|+..+++..+.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 47999999999999999999999999999999999987899999999999999999999999999999999999999653
No 92
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=2.7e-12 Score=106.69 Aligned_cols=83 Identities=20% Similarity=0.402 Sum_probs=79.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcc
Q 016936 151 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 230 (380)
Q Consensus 151 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~ 230 (380)
..++|||++|...+++.-|...|-+||.|..+.++.|-.+++++|||||+|.-.|+|..||..||+.++.||.|+|.++.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 34799999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred cCC
Q 016936 231 ASS 233 (380)
Q Consensus 231 ~~~ 233 (380)
+..
T Consensus 89 P~k 91 (298)
T KOG0111|consen 89 PEK 91 (298)
T ss_pred Ccc
Confidence 864
No 93
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.27 E-value=9.2e-11 Score=106.79 Aligned_cols=145 Identities=25% Similarity=0.342 Sum_probs=102.3
Q ss_pred cceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceecCceEE
Q 016936 32 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVR 110 (380)
Q Consensus 32 ~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~g~~i~ 110 (380)
.++|||+|||.++++++|.++|.+||.+... ....+......+|+|||+|.+.++|..|+ .+++..|.|++|+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~------~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~ 188 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRV------RLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLR 188 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEE------EeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeE
Confidence 6999999999999999999999999985321 01111124567899999999999999999 7999999999999
Q ss_pred EecCCC-CCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC
Q 016936 111 VRRPTD-YNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDR 188 (380)
Q Consensus 111 v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~ 188 (380)
|.+... ......... . ......................+++.+++..++..++..+|..+|.+....+....
T Consensus 189 v~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (306)
T COG0724 189 VQKAQPASQPRSELSN-----N-LDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSK 261 (306)
T ss_pred eecccccccccccccc-----c-cchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCC
Confidence 998643 111000000 0 00000000112222334455789999999999999999999999999766665543
No 94
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.26 E-value=6.5e-11 Score=84.59 Aligned_cols=74 Identities=36% Similarity=0.673 Sum_probs=68.4
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEE
Q 016936 154 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 228 (380)
Q Consensus 154 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~ 228 (380)
+|+|+|||..+++++|+++|+.||.|..+.+..++. +.++|+|||+|.+.++|..|+..+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~-~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKD-TKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999999999998764 47789999999999999999999999999999998864
No 95
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.26 E-value=9e-12 Score=88.81 Aligned_cols=64 Identities=36% Similarity=0.637 Sum_probs=54.4
Q ss_pred EEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCC-----CcEEEEEeCCHHHHHHHH-HcCCceecCce
Q 016936 35 VYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE-----KKFAFVEMRTVEEASNAM-ALDGIIFEGVA 108 (380)
Q Consensus 35 v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~-----~g~afV~f~~~~~a~~ai-~l~~~~i~g~~ 108 (380)
|||+|||+.+++++|+++|+.+|. |..+.+..+ +++|||+|.+.++|.+|+ ..++..++|+.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~------------v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~ 68 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGP------------VEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRK 68 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSB------------EEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCC------------cceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEE
Confidence 799999999999999999999986 666665544 699999999999999999 67779999998
Q ss_pred EE
Q 016936 109 VR 110 (380)
Q Consensus 109 i~ 110 (380)
|+
T Consensus 69 l~ 70 (70)
T PF14259_consen 69 LR 70 (70)
T ss_dssp EE
T ss_pred cC
Confidence 75
No 96
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.24 E-value=3e-11 Score=88.57 Aligned_cols=75 Identities=20% Similarity=0.255 Sum_probs=67.5
Q ss_pred hhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecC---CCcEEEEEeCCHHHHHHHH-HcCCce
Q 016936 28 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH---EKKFAFVEMRTVEEASNAM-ALDGII 103 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~---~~g~afV~f~~~~~a~~ai-~l~~~~ 103 (380)
+..-.+.|||+|||.++|.++++++|.+||+ |.+++++- .+|.|||.|.+..+|.+|+ .|+|-.
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~------------IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n 81 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGT------------IRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYN 81 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccc------------eEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccc
Confidence 4556789999999999999999999999998 77788764 5799999999999999999 899999
Q ss_pred ecCceEEEecC
Q 016936 104 FEGVAVRVRRP 114 (380)
Q Consensus 104 i~g~~i~v~~~ 114 (380)
+.++.+.|-+.
T Consensus 82 ~~~ryl~vlyy 92 (124)
T KOG0114|consen 82 VDNRYLVVLYY 92 (124)
T ss_pred cCCceEEEEec
Confidence 99999999763
No 97
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.24 E-value=2.2e-11 Score=115.11 Aligned_cols=80 Identities=36% Similarity=0.684 Sum_probs=77.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 016936 153 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 232 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~ 232 (380)
+.|||+|+|+++++++|.++|+..|.|..+++..|+.+|+.+||||++|.+.++|.+|++.|||.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999998654
No 98
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.24 E-value=8.2e-12 Score=105.31 Aligned_cols=83 Identities=18% Similarity=0.313 Sum_probs=71.1
Q ss_pred hhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHHHcCCceecCc
Q 016936 28 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGV 107 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai~l~~~~i~g~ 107 (380)
-+..-++|||+||++++..++|+++|.+||.|++.. .|.+..++++|||+||.|.+.++|.+|++-.+-.|.||
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eav------vitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR 81 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAV------VITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGR 81 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEE------EEeccCCccccceeeEEeecHHHHHHHhcCCCCccccc
Confidence 345668999999999999999999999999986642 34555578899999999999999999998888889999
Q ss_pred eEEEecCCC
Q 016936 108 AVRVRRPTD 116 (380)
Q Consensus 108 ~i~v~~~~~ 116 (380)
+-.+..+..
T Consensus 82 ~aNcnlA~l 90 (247)
T KOG0149|consen 82 KANCNLASL 90 (247)
T ss_pred ccccchhhh
Confidence 988887654
No 99
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=1.8e-11 Score=98.45 Aligned_cols=74 Identities=31% Similarity=0.452 Sum_probs=64.3
Q ss_pred ccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec-CCCcEEEEEeCCHHHHHHHH-HcCCceecCce
Q 016936 31 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN-HEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 108 (380)
Q Consensus 31 ~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~-~~~g~afV~f~~~~~a~~ai-~l~~~~i~g~~ 108 (380)
-.++|||+||+..+++.||...|..||+| .++-+- .--|||||+|.++.||+.|+ .|+|..|.|..
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~l------------rsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r 76 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPL------------RSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSR 76 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcc------------eeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCce
Confidence 37899999999999999999999999984 333332 34699999999999999999 89999999999
Q ss_pred EEEecCCC
Q 016936 109 VRVRRPTD 116 (380)
Q Consensus 109 i~v~~~~~ 116 (380)
|+|+.+..
T Consensus 77 ~rVE~S~G 84 (195)
T KOG0107|consen 77 IRVELSTG 84 (195)
T ss_pred EEEEeecC
Confidence 99987543
No 100
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=1.6e-11 Score=103.90 Aligned_cols=82 Identities=20% Similarity=0.252 Sum_probs=70.1
Q ss_pred cccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceecCce
Q 016936 30 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 108 (380)
Q Consensus 30 ~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~g~~ 108 (380)
.+.++|.|.||+.+++|.||.++|..||.|...+ ...+-.++.++|||||.|.+.++|++|| .|+|.-+..-.
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvy------lardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LI 260 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVY------LARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLI 260 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeE------EEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEE
Confidence 3788899999999999999999999999964421 1233346788999999999999999999 79999999999
Q ss_pred EEEecCCCC
Q 016936 109 VRVRRPTDY 117 (380)
Q Consensus 109 i~v~~~~~~ 117 (380)
|+|+|+.++
T Consensus 261 LrvEwskP~ 269 (270)
T KOG0122|consen 261 LRVEWSKPS 269 (270)
T ss_pred EEEEecCCC
Confidence 999997653
No 101
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.20 E-value=9.5e-11 Score=79.49 Aligned_cols=56 Identities=23% Similarity=0.486 Sum_probs=50.6
Q ss_pred HHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEc
Q 016936 169 IKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 229 (380)
Q Consensus 169 l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~ 229 (380)
|+++|++||.|..+.+.... +++|||+|.+.++|++|++.|||..+.|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999997653 579999999999999999999999999999999985
No 102
>smart00361 RRM_1 RNA recognition motif.
Probab=99.19 E-value=1.2e-10 Score=82.83 Aligned_cols=61 Identities=15% Similarity=0.289 Sum_probs=54.6
Q ss_pred HHHHHHHHH----hcCCeeEEE-EeeCCCC--CCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEE
Q 016936 166 ETQIKELLE----SFGTLHGFD-LVKDRDT--GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 226 (380)
Q Consensus 166 ~~~l~~~F~----~~G~i~~v~-l~~~~~~--~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v 226 (380)
+++|+++|+ +||.|.++. +..++.+ +.++|+|||.|.+.++|.+|+..|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 567888888 999999985 6666556 889999999999999999999999999999999986
No 103
>smart00362 RRM_2 RNA recognition motif.
Probab=99.18 E-value=1.3e-10 Score=82.44 Aligned_cols=66 Identities=38% Similarity=0.655 Sum_probs=58.3
Q ss_pred eEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCC----CcEEEEEeCCHHHHHHHH-HcCCceecCce
Q 016936 34 RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE----KKFAFVEMRTVEEASNAM-ALDGIIFEGVA 108 (380)
Q Consensus 34 ~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~----~g~afV~f~~~~~a~~ai-~l~~~~i~g~~ 108 (380)
+|+|+|||..+++++|+++|++||. +..+.+... +|+|||+|.+.++|..|+ .+++..+.|++
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~------------v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~ 68 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGP------------IESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRP 68 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCC------------EEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEE
Confidence 5899999999999999999999997 555555443 599999999999999999 79999999999
Q ss_pred EEE
Q 016936 109 VRV 111 (380)
Q Consensus 109 i~v 111 (380)
|+|
T Consensus 69 i~v 71 (72)
T smart00362 69 LRV 71 (72)
T ss_pred Eee
Confidence 887
No 104
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=4.2e-10 Score=105.20 Aligned_cols=172 Identities=24% Similarity=0.281 Sum_probs=115.0
Q ss_pred hhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCc---EEEEEeCCHHHHHHHH-H-cCCc
Q 016936 28 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKK---FAFVEMRTVEEASNAM-A-LDGI 102 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g---~afV~f~~~~~a~~ai-~-l~~~ 102 (380)
..+-+++|||++||++++|+.|...|.+||.+.-.+ |+ ..........+| |+|+.|+++.+++.-+ + ..+
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdW---P~-k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~- 329 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDW---PG-KANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEG- 329 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceEeec---CC-CccccccCCCCCcccEEEEEecchHHHHHHHHHHhhc-
Confidence 457789999999999999999999999999863211 00 011111123456 9999999999988877 2 221
Q ss_pred eecCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHH-hcCCeeE
Q 016936 103 IFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLE-SFGTLHG 181 (380)
Q Consensus 103 ~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~ 181 (380)
-.+--+.|.-+..+.+.. +. .-+...............+..+||||++||.-++.++|-.+|+ -||.|..
T Consensus 330 -~~~~yf~vss~~~k~k~V-------QI-rPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~y 400 (520)
T KOG0129|consen 330 -EGNYYFKVSSPTIKDKEV-------QI-RPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLY 400 (520)
T ss_pred -ccceEEEEecCcccccce-------eE-EeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEE
Confidence 111112222111111000 00 0000001111112333455668999999999999999999999 6999999
Q ss_pred EEEeeCCCCCCCceEEEEEEcChhHHHHHHHH
Q 016936 182 FDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 213 (380)
Q Consensus 182 v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~ 213 (380)
+-|=.|+..+-++|.|-|.|.+..+-.+||.+
T Consensus 401 aGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 401 VGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred EEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 99988877788999999999999999999986
No 105
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.15 E-value=2.5e-11 Score=100.09 Aligned_cols=74 Identities=24% Similarity=0.403 Sum_probs=64.0
Q ss_pred CChHHHHHHHHHHHHhhcccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCCeEEEEEecc
Q 016936 293 ADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYP 369 (380)
Q Consensus 293 ~~~~~~~~~~~~L~~~f~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~~ 369 (380)
++|+.|.++-++|+.+|++||.|-+|.|+.+..+.. ++ |||||.|....+|+.|+++|+|..++|+.|+|+++-
T Consensus 18 VdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~-sR--gFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 18 VDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQ-SR--GFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred ecceeccCCHHHHHHHHHHhCcccceeccccccccc-cc--ceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 344556666689999999999999999999886554 55 566999999999999999999999999999999874
No 106
>smart00361 RRM_1 RNA recognition motif.
Probab=99.11 E-value=1.7e-10 Score=82.00 Aligned_cols=61 Identities=26% Similarity=0.394 Sum_probs=47.1
Q ss_pred HHHHhhc----ccCCeEEEE-ecCCCCC-CCCCCCccEEEEEeechhhHHHHHHHHcCcccCCeEEEEE
Q 016936 304 DMREECG----KYGTLVNVV-IPRPDQN-GGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAF 366 (380)
Q Consensus 304 ~L~~~f~----~~G~I~~v~-i~~~~~~-~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~ 366 (380)
+|+++|+ +||.|.++. +..++.+ ...++ |++||+|.+.++|.+|+..|||+.+.||.|+++
T Consensus 4 ~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~r--G~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 4 DFEREFSEEEEYFGEVGKINKIYIDNVGYENHKR--GNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred hHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCc--EEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 5555555 999999995 4443333 12244 567999999999999999999999999999874
No 107
>PLN03213 repressor of silencing 3; Provisional
Probab=99.10 E-value=2.5e-10 Score=105.67 Aligned_cols=77 Identities=19% Similarity=0.375 Sum_probs=66.1
Q ss_pred hcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec--CCCcEEEEEeCCH--HHHHHHH-HcCCce
Q 016936 29 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN--HEKKFAFVEMRTV--EEASNAM-ALDGII 103 (380)
Q Consensus 29 ~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~--~~~g~afV~f~~~--~~a~~ai-~l~~~~ 103 (380)
....-+|||+||+++++++||...|.+||. |.++.+. ..+|||||+|.+. .++.+|| .|+|..
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGs------------VkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAE 74 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGT------------VDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCV 74 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCC------------eeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCe
Confidence 445678999999999999999999999998 4545443 3489999999987 7899999 899999
Q ss_pred ecCceEEEecCCCC
Q 016936 104 FEGVAVRVRRPTDY 117 (380)
Q Consensus 104 i~g~~i~v~~~~~~ 117 (380)
|+|+.|+|..+...
T Consensus 75 WKGR~LKVNKAKP~ 88 (759)
T PLN03213 75 WKGGRLRLEKAKEH 88 (759)
T ss_pred ecCceeEEeeccHH
Confidence 99999999977643
No 108
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.07 E-value=6e-12 Score=101.68 Aligned_cols=88 Identities=27% Similarity=0.391 Sum_probs=75.9
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceec
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFE 105 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~ 105 (380)
+.=.++--|||+|||+++||.||.-.|++||.+++.+ .|.+-.+++++||||+.|.+-.+...|+ .+||..|.
T Consensus 30 ~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdin------LiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~ 103 (219)
T KOG0126|consen 30 QEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDIN------LIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKIL 103 (219)
T ss_pred hhcccceEEEECCCcccccCCcEEEEeeccCceEEEE------EEecCCCCcccceEEEEecCccceEEEEeccCCceec
Confidence 3446777899999999999999999999999976532 3555567899999999999999999999 89999999
Q ss_pred CceEEEecCCCCCcc
Q 016936 106 GVAVRVRRPTDYNPT 120 (380)
Q Consensus 106 g~~i~v~~~~~~~~~ 120 (380)
|+.|+|.+-..|...
T Consensus 104 gRtirVDHv~~Yk~p 118 (219)
T KOG0126|consen 104 GRTIRVDHVSNYKKP 118 (219)
T ss_pred ceeEEeeecccccCC
Confidence 999999987776554
No 109
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.06 E-value=1e-09 Score=78.25 Aligned_cols=68 Identities=38% Similarity=0.589 Sum_probs=59.5
Q ss_pred eEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecC-----CCcEEEEEeCCHHHHHHHH-HcCCceecCc
Q 016936 34 RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH-----EKKFAFVEMRTVEEASNAM-ALDGIIFEGV 107 (380)
Q Consensus 34 ~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~-----~~g~afV~f~~~~~a~~ai-~l~~~~i~g~ 107 (380)
+|+|+|||+.+++++|+++|+++|. +..+.+.. .+++|||+|.+.++|..|+ .+++..+.|+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~------------i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~ 68 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGK------------VESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGR 68 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCC------------EEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 5899999999999999999999987 55555443 3799999999999999999 7999999999
Q ss_pred eEEEec
Q 016936 108 AVRVRR 113 (380)
Q Consensus 108 ~i~v~~ 113 (380)
++.|.+
T Consensus 69 ~~~v~~ 74 (74)
T cd00590 69 PLRVEF 74 (74)
T ss_pred EEEEeC
Confidence 998864
No 110
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.01 E-value=1.3e-09 Score=95.14 Aligned_cols=79 Identities=19% Similarity=0.213 Sum_probs=70.3
Q ss_pred hcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceecCc
Q 016936 29 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 107 (380)
Q Consensus 29 ~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~g~ 107 (380)
.-+.|||||.-|+++++|.+|+..|+.||.|.... .|.+..+++++|||||+|.+..+...|. ..+|..|.|+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~Ikrir------lV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgr 171 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIR------LVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGR 171 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEE------EeeecccCCccceEEEEeccHHHHHHHHHhccCceecCc
Confidence 36789999999999999999999999999986532 3555567899999999999999999999 7999999999
Q ss_pred eEEEec
Q 016936 108 AVRVRR 113 (380)
Q Consensus 108 ~i~v~~ 113 (380)
.|-|..
T Consensus 172 ri~VDv 177 (335)
T KOG0113|consen 172 RILVDV 177 (335)
T ss_pred EEEEEe
Confidence 999976
No 111
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.00 E-value=4.6e-10 Score=86.37 Aligned_cols=85 Identities=25% Similarity=0.225 Sum_probs=70.0
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceec
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFE 105 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~ 105 (380)
+.+.+.=.|||+++...++|+||.+.|..||.|.+.. .-++.+++-.||||+|+|.+.++|++|+ .+|+..+.
T Consensus 67 qrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNih------LNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll 140 (170)
T KOG0130|consen 67 QRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIH------LNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELL 140 (170)
T ss_pred ccceeeEEEEEeccCcchhHHHHHHHHhhccccccee------eccccccccccceeeeehHhHHHHHHHHHhccchhhh
Confidence 3445556799999999999999999999999965432 1234445566899999999999999999 89999999
Q ss_pred CceEEEecCCCC
Q 016936 106 GVAVRVRRPTDY 117 (380)
Q Consensus 106 g~~i~v~~~~~~ 117 (380)
|.+|.|.|...+
T Consensus 141 ~q~v~VDw~Fv~ 152 (170)
T KOG0130|consen 141 GQNVSVDWCFVK 152 (170)
T ss_pred CCceeEEEEEec
Confidence 999999996543
No 112
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=2.5e-10 Score=95.05 Aligned_cols=81 Identities=26% Similarity=0.432 Sum_probs=71.3
Q ss_pred chhhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEe------cCCCcEEEEEeCCHHHHHHHH-
Q 016936 25 TQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASNAM- 97 (380)
Q Consensus 25 ~~~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~------~~~~g~afV~f~~~~~a~~ai- 97 (380)
.++....-|+|||++|..+++|.-|...|-.||. |.++.+ .+++|||||+|...|||..||
T Consensus 3 ~~~~a~~KrtlYVGGladeVtekvLhaAFIPFGD------------I~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiD 70 (298)
T KOG0111|consen 3 QQQMANQKRTLYVGGLADEVTEKVLHAAFIPFGD------------IKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAID 70 (298)
T ss_pred cccccccceeEEeccchHHHHHHHHHhccccccc------------hhhcccccchhcccccceeEEEeeccchhHHHhh
Confidence 3455667899999999999999999999999998 555555 467999999999999999999
Q ss_pred HcCCceecCceEEEecCCCC
Q 016936 98 ALDGIIFEGVAVRVRRPTDY 117 (380)
Q Consensus 98 ~l~~~~i~g~~i~v~~~~~~ 117 (380)
.+|...+.|+.|+|.++.+-
T Consensus 71 NMnesEL~GrtirVN~AkP~ 90 (298)
T KOG0111|consen 71 NMNESELFGRTIRVNLAKPE 90 (298)
T ss_pred cCchhhhcceeEEEeecCCc
Confidence 89999999999999987653
No 113
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.95 E-value=1.4e-10 Score=96.54 Aligned_cols=150 Identities=22% Similarity=0.273 Sum_probs=121.7
Q ss_pred hhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCC----cEEEEEeCCHHHHHHHH-HcCCc
Q 016936 28 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEK----KFAFVEMRTVEEASNAM-ALDGI 102 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~----g~afV~f~~~~~a~~ai-~l~~~ 102 (380)
+....+||||.|+...++|+-|.++|-+-|+ |+.+.+.+.+ .||||.|.++-++.-|+ -+||.
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGP------------V~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~ 72 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGP------------VYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGD 72 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCc------------eEEEeCCCCccCCCceeeeecccccchhhhhhhcccc
Confidence 4456799999999999999999999999987 7777776542 49999999999999999 58999
Q ss_pred eecCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEE
Q 016936 103 IFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGF 182 (380)
Q Consensus 103 ~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v 182 (380)
.+.+.+++++.-...+.. - |...++.+.+...|+.-|++..+
T Consensus 73 ~l~~~e~q~~~r~G~sha---------------------------------p-----ld~r~~~ei~~~v~s~a~p~~~~ 114 (267)
T KOG4454|consen 73 DLEEDEEQRTLRCGNSHA---------------------------------P-----LDERVTEEILYEVFSQAGPIEGV 114 (267)
T ss_pred hhccchhhcccccCCCcc---------------------------------h-----hhhhcchhhheeeecccCCCCCc
Confidence 999999999752211000 0 33456888899999999999999
Q ss_pred EEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEE
Q 016936 183 DLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 228 (380)
Q Consensus 183 ~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~ 228 (380)
++..+. +|+++.++|+.+....+...++..+.+....-+++.+.-
T Consensus 115 R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~~~gg 159 (267)
T KOG4454|consen 115 RIPTDN-DGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKVTIGG 159 (267)
T ss_pred cccccc-cCCccCccchhhhhhhcCcHHhhhhcccCcCCCCccccc
Confidence 998885 489999999999999999999998888777666665543
No 114
>smart00360 RRM RNA recognition motif.
Probab=98.94 E-value=3.5e-09 Score=74.71 Aligned_cols=64 Identities=36% Similarity=0.629 Sum_probs=54.8
Q ss_pred EcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec------CCCcEEEEEeCCHHHHHHHH-HcCCceecCceE
Q 016936 37 VGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN------HEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAV 109 (380)
Q Consensus 37 V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~------~~~g~afV~f~~~~~a~~ai-~l~~~~i~g~~i 109 (380)
|+|||..+++++|+++|++||. +..+.+. .++|+|||+|.+.++|..|+ .+++..+.|++|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~------------v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~ 68 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGK------------IESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPL 68 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCC------------EeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEE
Confidence 5799999999999999999997 4444433 23689999999999999999 799999999998
Q ss_pred EEe
Q 016936 110 RVR 112 (380)
Q Consensus 110 ~v~ 112 (380)
+|.
T Consensus 69 ~v~ 71 (71)
T smart00360 69 KVK 71 (71)
T ss_pred EeC
Confidence 873
No 115
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.94 E-value=2.7e-09 Score=88.57 Aligned_cols=81 Identities=31% Similarity=0.534 Sum_probs=75.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhc-CCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcc
Q 016936 152 PDRVFVGGLPYYFTETQIKELLESF-GTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 230 (380)
Q Consensus 152 ~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~ 230 (380)
..-+|+..+|..+.+.++..+|++| |.+..+++.+++.+|.++|||||+|.+++.|+-|.+.||...+.++.|.|.+..
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmp 128 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMP 128 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeC
Confidence 3579999999999999999999998 778899999999999999999999999999999999999999999999999875
Q ss_pred cC
Q 016936 231 AS 232 (380)
Q Consensus 231 ~~ 232 (380)
+.
T Consensus 129 pe 130 (214)
T KOG4208|consen 129 PE 130 (214)
T ss_pred ch
Confidence 43
No 116
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.93 E-value=2.3e-09 Score=95.42 Aligned_cols=81 Identities=23% Similarity=0.370 Sum_probs=73.0
Q ss_pred cchhhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-H-cCC
Q 016936 24 MTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-A-LDG 101 (380)
Q Consensus 24 ~~~~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~-l~~ 101 (380)
+...++...++|||++|-..++|.||+++|-+||. |.++.+...++||||+|.+.++|++|. + ++.
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGe------------irsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~ 287 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGE------------IRSIRILPRKGCAFVTFTTREAAEKAAEKSFNK 287 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCC------------eeeEEeecccccceeeehhhHHHHHHHHhhcce
Confidence 33456788999999999989999999999999998 888888899999999999999999999 4 777
Q ss_pred ceecCceEEEecCCC
Q 016936 102 IIFEGVAVRVRRPTD 116 (380)
Q Consensus 102 ~~i~g~~i~v~~~~~ 116 (380)
..|.|+.|.|.|...
T Consensus 288 lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 288 LVINGFRLKIKWGRP 302 (377)
T ss_pred eeecceEEEEEeCCC
Confidence 779999999999776
No 117
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.92 E-value=1.7e-09 Score=102.36 Aligned_cols=81 Identities=27% Similarity=0.415 Sum_probs=71.8
Q ss_pred ceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceecCceEEE
Q 016936 33 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRV 111 (380)
Q Consensus 33 ~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~g~~i~v 111 (380)
+.|||+|||+++++++|.+.|+..|.|.. ...+.+...++.+||||++|.+.++|..|+ .||+..+.|++|+|
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s------~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v 92 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLS------FRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRV 92 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccce------eeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEe
Confidence 99999999999999999999999999654 234556666788999999999999999999 79999999999999
Q ss_pred ecCCCCCc
Q 016936 112 RRPTDYNP 119 (380)
Q Consensus 112 ~~~~~~~~ 119 (380)
.|+.....
T Consensus 93 ~~~~~~~~ 100 (435)
T KOG0108|consen 93 NYASNRKN 100 (435)
T ss_pred ecccccch
Confidence 99876554
No 118
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.85 E-value=5.5e-09 Score=101.88 Aligned_cols=79 Identities=19% Similarity=0.397 Sum_probs=73.6
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceec
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFE 105 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~ 105 (380)
....-+|||||++|+..+++.||.++|..||. |.++.++..++||||...+..+|.+|+ +|++..+.
T Consensus 416 ~isV~SrTLwvG~i~k~v~e~dL~~~feefGe------------iqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~ 483 (894)
T KOG0132|consen 416 HISVCSRTLWVGGIPKNVTEQDLANLFEEFGE------------IQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVA 483 (894)
T ss_pred ceeEeeeeeeeccccchhhHHHHHHHHHhccc------------ceeEeeccCCceeEEEEeehhHHHHHHHHHhccccc
Confidence 45677899999999999999999999999998 888999999999999999999999999 89999999
Q ss_pred CceEEEecCCCC
Q 016936 106 GVAVRVRRPTDY 117 (380)
Q Consensus 106 g~~i~v~~~~~~ 117 (380)
++.|+|.|+-.+
T Consensus 484 ~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 484 DKTIKIAWAVGK 495 (894)
T ss_pred ceeeEEeeeccC
Confidence 999999997654
No 119
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.84 E-value=2.6e-09 Score=92.84 Aligned_cols=97 Identities=30% Similarity=0.517 Sum_probs=80.1
Q ss_pred CccceEEEEeccCCcccCCChHHHHHHHHHHHHhhcccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHc
Q 016936 275 ETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALS 354 (380)
Q Consensus 275 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~f~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~ 354 (380)
.++++++.+.|++...+..++.+ .++++.|++||.|.+|.|+-.+..... . ---.||+|..+++|.+|+-.||
T Consensus 278 ~~ptkvlllrnmVg~gevd~ele-----de~keEceKyg~V~~viifeip~~p~d-e-avRiFveF~r~e~aiKA~Vdln 350 (378)
T KOG1996|consen 278 KCPTKVLLLRNMVGAGEVDEELE-----DETKEECEKYGKVGNVIIFEIPSQPED-E-AVRIFVEFERVESAIKAVVDLN 350 (378)
T ss_pred hcchHHHHhhhhcCcccccHHHH-----HHHHHHHHhhcceeeEEEEecCCCccc-h-hheeeeeeccHHHHHHHHHhcC
Confidence 67888999999998877655443 588999999999999998876432211 0 1136999999999999999999
Q ss_pred CcccCCeEEEEEeccccccccccC
Q 016936 355 GRKFGGNTVNAFYYPEDKYFNKDY 378 (380)
Q Consensus 355 g~~i~gr~l~v~~~~~~~~~~~~~ 378 (380)
|++|+||.++..|++.++|.+.++
T Consensus 351 GRyFGGr~v~A~Fyn~ekfs~~el 374 (378)
T KOG1996|consen 351 GRYFGGRVVSACFYNLEKFSNLEL 374 (378)
T ss_pred CceecceeeeheeccHHhhhhhhh
Confidence 999999999999999999998765
No 120
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.80 E-value=4.7e-09 Score=94.93 Aligned_cols=177 Identities=18% Similarity=0.223 Sum_probs=134.6
Q ss_pred cccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEE-EEecCCCcEEEEEeCCHHHHHHHHHcCCc-eecCc
Q 016936 30 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVN-VYINHEKKFAFVEMRTVEEASNAMALDGI-IFEGV 107 (380)
Q Consensus 30 ~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~-~~~~~~~g~afV~f~~~~~a~~ai~l~~~-~i~g~ 107 (380)
...++.|++++...+.+.+...++..+|...... ... -....++|++++.|...+.+..|+.+.+. ...++
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~-------~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~ 158 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDAR-------SSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGN 158 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccch-------hhhhccccccccceeeccccHHHHHHHHHhhhccccccc
Confidence 4689999999999999999999999999743211 111 12345789999999999999999977775 34444
Q ss_pred eEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEE-EcCCCCCCCHHHHHHHHHhcCCeeEEEEee
Q 016936 108 AVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVF-VGGLPYYFTETQIKELLESFGTLHGFDLVK 186 (380)
Q Consensus 108 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~ 186 (380)
.+........... ..+ ...........++| +.+++..+++++|+.+|..+|.|..++++.
T Consensus 159 ~~~~dl~~~~~~~------------~~n-------~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~ 219 (285)
T KOG4210|consen 159 KGEKDLNTRRGLR------------PKN-------KLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPT 219 (285)
T ss_pred cccCccccccccc------------ccc-------hhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCC
Confidence 4444332221100 000 00011123335666 999999999999999999999999999999
Q ss_pred CCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 016936 187 DRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 233 (380)
Q Consensus 187 ~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~~ 233 (380)
++.++..+|+|+|.|.....+.+++.. ....+.++.+.+....++.
T Consensus 220 ~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 220 DEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred CCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCCc
Confidence 999999999999999999999999987 8889999999999887654
No 121
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.80 E-value=2.1e-08 Score=89.43 Aligned_cols=75 Identities=17% Similarity=0.380 Sum_probs=67.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHh-CCCeeCCeEEEEEEc
Q 016936 151 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL-NGLKMGDKTLTVRRA 229 (380)
Q Consensus 151 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l-~g~~~~g~~i~v~~~ 229 (380)
.-++|||++|-..+++.+|+++|-+||.|..+++... ++||||+|.+.+.|+.|.++. +-..+.|++|.|.|+
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg 300 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWG 300 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeC
Confidence 3479999999889999999999999999999999776 359999999999999999984 445779999999999
Q ss_pred cc
Q 016936 230 TA 231 (380)
Q Consensus 230 ~~ 231 (380)
.+
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 77
No 122
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.80 E-value=5.5e-10 Score=109.96 Aligned_cols=151 Identities=23% Similarity=0.282 Sum_probs=124.1
Q ss_pred hhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeE-EEEecCCCcEEEEEeCCHHHHHHHHHcCCceecC
Q 016936 28 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV-NVYINHEKKFAFVEMRTVEEASNAMALDGIIFEG 106 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~-~~~~~~~~g~afV~f~~~~~a~~ai~l~~~~i~g 106 (380)
..++.+++||+||++.+.+.||...|..+|.+... . +. -+....-+|+|||+|..++++.+|+.+....+.|
T Consensus 663 ~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~v------q-i~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 663 EIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVV------Q-IVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHHHHHhhcchhhcCchhhhhcCccchhhhH------H-HHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 34788999999999999999999999999885310 0 11 1111234799999999999999999776666665
Q ss_pred ceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEee
Q 016936 107 VAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVK 186 (380)
Q Consensus 107 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~ 186 (380)
. ..++|.|.|+..|.++++.+++++|.+..++++.
T Consensus 736 -----K----------------------------------------~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt 770 (881)
T KOG0128|consen 736 -----K----------------------------------------ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVT 770 (881)
T ss_pred -----h----------------------------------------hhhheeCCCCCCchHHHHhhccccCCccccchhh
Confidence 1 2789999999999999999999999999998877
Q ss_pred CCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEccc
Q 016936 187 DRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 231 (380)
Q Consensus 187 ~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~ 231 (380)
.+ .|.++|-|+|.|.++.+|.++....+...+.-+.+.|..+.+
T Consensus 771 ~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 771 VR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hh-ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 76 599999999999999999999998887777777777776544
No 123
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.78 E-value=7e-09 Score=102.75 Aligned_cols=164 Identities=20% Similarity=0.345 Sum_probs=131.0
Q ss_pred chhhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEe---cCCCcEEEEEeCCHHHHHHHH-HcC
Q 016936 25 TQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI---NHEKKFAFVEMRTVEEASNAM-ALD 100 (380)
Q Consensus 25 ~~~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~---~~~~g~afV~f~~~~~a~~ai-~l~ 100 (380)
...+....+|||++||+..+++.+|+-.|..+|.+.. +++.. +...-||||.|.+...+-.|. .+.
T Consensus 365 ~~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~----------VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s 434 (975)
T KOG0112|consen 365 KLDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEE----------VDIKTPHIKTESAYAFVSLLNTDMTPSAKFEES 434 (975)
T ss_pred cccchhhhhhhhhcCcccchhhhhhhhhhhhhccccc----------cccccCCCCcccchhhhhhhccccCcccchhhc
Confidence 3346688999999999999999999999999998432 22332 334579999999999999999 888
Q ss_pred CceecCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCee
Q 016936 101 GIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLH 180 (380)
Q Consensus 101 ~~~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~ 180 (380)
+..|....+++.....+ ....+.+++++|+.++....+...|..||+|.
T Consensus 435 ~~~I~~g~~r~glG~~k-------------------------------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir 483 (975)
T KOG0112|consen 435 GPLIGNGTHRIGLGQPK-------------------------------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIR 483 (975)
T ss_pred CCccccCcccccccccc-------------------------------cccceeeccCCCCCCChHHHHHHHhhccCcce
Confidence 88887766666552110 12336899999999999999999999999999
Q ss_pred EEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCC--eEEEEEEcccCCCC
Q 016936 181 GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD--KTLTVRRATASSGQ 235 (380)
Q Consensus 181 ~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g--~~i~v~~~~~~~~~ 235 (380)
.|.+-. | ..||+|+|++...|+.|+..+.|..+++ +.++|.++.+....
T Consensus 484 ~Idy~h----g--q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~~~~ 534 (975)
T KOG0112|consen 484 IIDYRH----G--QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPPGAT 534 (975)
T ss_pred eeeccc----C--CcceeeecccCccchhhHHHHhcCcCCCCCcccccccccCCCCC
Confidence 887733 2 3499999999999999999999999976 56888888765444
No 124
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.76 E-value=3.5e-08 Score=95.15 Aligned_cols=196 Identities=9% Similarity=0.016 Sum_probs=123.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 016936 153 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 232 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~ 232 (380)
..+-++++++.+...|++++|-.. .+..+.|..+...+.-.|-++|.|....++++|+.. +...+-.|.+.+..+...
T Consensus 312 ~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~g~~ 389 (944)
T KOG4307|consen 312 YYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPPGNL 389 (944)
T ss_pred heeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCCCcc
Confidence 345678889999999999998632 244556666554344478899999999999999986 667777888888776544
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHhhhc--------CccccCCCCCccCCccceEEEEeccCCcccCCChHHHHHHHHH
Q 016936 233 SGQSKTEQESILAQAQQHIAIQKMALQTS--------GMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILED 304 (380)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 304 (380)
..........-.-. ....... +...++...+ .+...+.|+.+....-.... .+
T Consensus 390 ~~~~a~~~~~~~~~--------~~~~~~hg~p~~~pr~~~~~gq~vp-~P~~ag~~lyv~~lP~~t~~----------~~ 450 (944)
T KOG4307|consen 390 GRNGAPPFQAGVPP--------PVIQNNHGRPIAPPRAMVRPGQNVP-FPGGAGGALYVFQLPVMTPI----------VP 450 (944)
T ss_pred ccccCccccccCCC--------CcccccCCCCCCCcccccCCCCCCC-CCCCccceEEeccCCccccc----------cc
Confidence 32221111000000 0000000 0001111111 12344566666653322222 37
Q ss_pred HHHhhcccCCeEE-EEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCCeEEEEEecccccc
Q 016936 305 MREECGKYGTLVN-VVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKY 373 (380)
Q Consensus 305 L~~~f~~~G~I~~-v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~~~~~~ 373 (380)
+.+.|..--.|++ |.|.+ ..++.. .+.|||.|..++++.+|...-+-.+++.|.|+|.-+.++..
T Consensus 451 ~v~~f~~~~~Ved~I~lt~-~P~~~~---~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~~m 516 (944)
T KOG4307|consen 451 PVNKFMGAAAVEDFIELTR-LPTDLL---RPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADYAM 516 (944)
T ss_pred hhhhhhhhhhhhheeEecc-CCcccc---cchhhheeccccccchhhhcccccccCceEEEeechhhHHH
Confidence 8899988888888 55544 334332 35679999999999999998888899999999998887543
No 125
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.71 E-value=9.5e-08 Score=90.24 Aligned_cols=85 Identities=19% Similarity=0.360 Sum_probs=75.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEE
Q 016936 149 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 228 (380)
Q Consensus 149 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~ 228 (380)
+...++|||.+|...+-..+|+++|++||.|...+++.+..+-..++|+||.+.+.++|.+||..|+..+|.|+.|.|..
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 44558999999999999999999999999999988888755556788999999999999999999999999999999998
Q ss_pred cccCC
Q 016936 229 ATASS 233 (380)
Q Consensus 229 ~~~~~ 233 (380)
++...
T Consensus 482 aKNEp 486 (940)
T KOG4661|consen 482 AKNEP 486 (940)
T ss_pred cccCc
Confidence 76543
No 126
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.69 E-value=9.9e-10 Score=108.19 Aligned_cols=241 Identities=15% Similarity=0.135 Sum_probs=175.3
Q ss_pred hhcccceEEEcCCCCcCcHH-HHHHHHHHHHHhccCCCCCCCCeeEEEEecC------CCcEEEEEeCCHHHHHHHHHcC
Q 016936 28 ATRHARRVYVGGLPPLANEQ-AIATFFSQVMTAIGGNSAGPGDAVVNVYINH------EKKFAFVEMRTVEEASNAMALD 100 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~~~t~~-~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~------~~g~afV~f~~~~~a~~ai~l~ 100 (380)
.....+...+.++.+..... ..+..|..+|. +..++..+ ...++++.++...+++.|....
T Consensus 567 ~~~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~------------vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa 634 (881)
T KOG0128|consen 567 APLERREKESTNVYPEQQKKEIQRRQFKGEGN------------VEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPA 634 (881)
T ss_pred hhhhhhhhcccCCCcchhhHHhhHHHhhcccc------------cccccCccccccccccchhhhhhccccchhhccccc
Confidence 45566778888998887666 56788888877 55555544 1238999999999999999888
Q ss_pred CceecCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCee
Q 016936 101 GIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLH 180 (380)
Q Consensus 101 ~~~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~ 180 (380)
+..+.++.+.+..+........... .++. .....++|++||+....+.+|...|..+|.+.
T Consensus 635 ~~~~a~~~~av~~ad~~~~~~~~kv-----s~n~--------------~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e 695 (881)
T KOG0128|consen 635 GGALANRSAAVGLADAEEKEENFKV-----SPNE--------------IRDLIKIFVSNLSPKMSEEDLSERFSPSGTIE 695 (881)
T ss_pred ccccCCccccCCCCCchhhhhccCc-----CchH--------------HHHHHHHHHhhcchhhcCchhhhhcCccchhh
Confidence 8788888888876544432211110 0000 01113789999999999999999999999988
Q ss_pred EEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccCCCCChhHHHHHHHHHHHHHHHHHHHhhh
Q 016936 181 GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQT 260 (380)
Q Consensus 181 ~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (380)
.+++....+.++.+|.|++.|..++++.+|+...+++.++...+.++-.
T Consensus 696 ~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i~g~------------------------------- 744 (881)
T KOG0128|consen 696 VVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAISGP------------------------------- 744 (881)
T ss_pred hHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhheeCC-------------------------------
Confidence 7766544557899999999999999999999976555544222222211
Q ss_pred cCccccCCCCCccCCccceEEEEeccCCcccCCChHHHHHHHHHHHHhhcccCCeEEEEecCCCCCCCCCCCccEEEEEe
Q 016936 261 SGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEY 340 (380)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~f~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f 340 (380)
.+.. |.+.|+.+|.++|++.+..++... .|. -.|.|||.|
T Consensus 745 -------------------------pf~g-----------t~e~~k~l~~~~gn~~~~~~vt~r-~gk---pkg~a~v~y 784 (881)
T KOG0128|consen 745 -------------------------PFQG-----------TKEELKSLASKTGNVTSLRLVTVR-AGK---PKGKARVDY 784 (881)
T ss_pred -------------------------CCCC-----------chHHHHhhccccCCccccchhhhh-ccc---cccceeccC
Confidence 1111 225899999999999999876544 433 346789999
Q ss_pred echhhHHHHHHHHcCcccCCeEEEEEeccc
Q 016936 341 YDAVGCATAKNALSGRKFGGNTVNAFYYPE 370 (380)
Q Consensus 341 ~~~~~A~~A~~~l~g~~i~gr~l~v~~~~~ 370 (380)
.++.+|.++...+.+..++-+.+.|...++
T Consensus 785 ~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 785 NTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred CCcchhhhhcccchhhhhhhcCccccccCC
Confidence 999999999999999998888888877433
No 127
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.69 E-value=8.9e-08 Score=83.58 Aligned_cols=86 Identities=23% Similarity=0.396 Sum_probs=77.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEE
Q 016936 149 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 228 (380)
Q Consensus 149 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~ 228 (380)
...+.+|+|.|||+.++.+||+++|..||.+..+-+..++ .|++.|+|-|.|...++|.+|++.+++..+.|+.|.+..
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 3444789999999999999999999999999999999996 699999999999999999999999999999999999998
Q ss_pred cccCCCC
Q 016936 229 ATASSGQ 235 (380)
Q Consensus 229 ~~~~~~~ 235 (380)
.......
T Consensus 159 i~~~~~~ 165 (243)
T KOG0533|consen 159 ISSPSQS 165 (243)
T ss_pred ecCcccc
Confidence 7665444
No 128
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=4.3e-08 Score=87.52 Aligned_cols=81 Identities=20% Similarity=0.413 Sum_probs=76.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEccc
Q 016936 152 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 231 (380)
Q Consensus 152 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~ 231 (380)
.+-|||=-|.+.++.++|.-+|+.||.|.+|.+++|..+|.+-.||||+|.+.++.++|.-+|+...|..++|+|.++..
T Consensus 239 eNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQS 318 (479)
T KOG0415|consen 239 ENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQS 318 (479)
T ss_pred cceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhh
Confidence 36799999999999999999999999999999999998999999999999999999999999999999999999999765
Q ss_pred C
Q 016936 232 S 232 (380)
Q Consensus 232 ~ 232 (380)
-
T Consensus 319 V 319 (479)
T KOG0415|consen 319 V 319 (479)
T ss_pred h
Confidence 4
No 129
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.67 E-value=5.1e-08 Score=83.41 Aligned_cols=132 Identities=22% Similarity=0.360 Sum_probs=104.9
Q ss_pred cCCCcEEEEEeCCHHHHHHHH-HcCCceecCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEE
Q 016936 77 NHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRV 155 (380)
Q Consensus 77 ~~~~g~afV~f~~~~~a~~ai-~l~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 155 (380)
.+-.+++|+.|.....-.++- .-++.++...+|++-........ ...+| .....+|
T Consensus 137 ~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtswedP-----------sl~ew------------~~~DfRI 193 (290)
T KOG0226|consen 137 QPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSWEDP-----------SLAEW------------DEDDFRI 193 (290)
T ss_pred CccCcccccCcchhhhhhhhccccccccccCcceeeccccccCCc-----------ccccC------------cccccee
Confidence 445689999998777777766 56667777777776543322111 01112 2223699
Q ss_pred EEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEccc
Q 016936 156 FVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 231 (380)
Q Consensus 156 ~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~ 231 (380)
|++.|.-.++.+.|-..|.+|-.-...++++++.+|+++||+||.|.+..++.+|+..++|++++.++|.++....
T Consensus 194 fcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~w 269 (290)
T KOG0226|consen 194 FCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEW 269 (290)
T ss_pred ecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhH
Confidence 9999999999999999999999988889999999999999999999999999999999999999999999986543
No 130
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.67 E-value=5.5e-08 Score=95.09 Aligned_cols=78 Identities=26% Similarity=0.457 Sum_probs=71.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEE
Q 016936 149 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 228 (380)
Q Consensus 149 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~ 228 (380)
...++||||++|+..+++.||.++|+.||.|.+|.+.. ++|||||.+.+..+|.+|+.+|+...+.++.|+|.|
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~W 491 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAW 491 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEee
Confidence 34558999999999999999999999999999998854 468999999999999999999999999999999999
Q ss_pred cccC
Q 016936 229 ATAS 232 (380)
Q Consensus 229 ~~~~ 232 (380)
+.-.
T Consensus 492 a~g~ 495 (894)
T KOG0132|consen 492 AVGK 495 (894)
T ss_pred eccC
Confidence 8654
No 131
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.66 E-value=2.4e-08 Score=99.09 Aligned_cols=160 Identities=15% Similarity=0.238 Sum_probs=122.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEE
Q 016936 149 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 228 (380)
Q Consensus 149 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~ 228 (380)
...+++||++||+..+++.+|+..|..+|.|.+|.|-.-+ -+...-||||.|.+..++-.|...+.+..|....+++.+
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 4455899999999999999999999999999999885543 344455899999999999999999988887666666655
Q ss_pred cccCCCCChhHHHHHHHHHHHHHHHHHHHhhhcCccccCCCCCccCCccceEEEEeccCCcccCCChHHHHHHHHHHHHh
Q 016936 229 ATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREE 308 (380)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ 308 (380)
.... ..+++-+........... ..|..+
T Consensus 448 G~~k------------------------------------------st~ttr~~sgglg~w~p~----------~~l~r~ 475 (975)
T KOG0112|consen 448 GQPK------------------------------------------STPTTRLQSGGLGPWSPV----------SRLNRE 475 (975)
T ss_pred cccc------------------------------------------cccceeeccCCCCCCChH----------HHHHHH
Confidence 4321 112222222222111111 478899
Q ss_pred hcccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCC--eEEEEEeccc
Q 016936 309 CGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGG--NTVNAFYYPE 370 (380)
Q Consensus 309 f~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~g--r~l~v~~~~~ 370 (380)
|..||.|..|.+.... -+|||.|.+...|+.|+..|-|..|+| ++++|.|+.+
T Consensus 476 fd~fGpir~Idy~hgq---------~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 476 FDRFGPIRIIDYRHGQ---------PYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASP 530 (975)
T ss_pred hhccCcceeeecccCC---------cceeeecccCccchhhHHHHhcCcCCCCCcccccccccC
Confidence 9999999997774322 389999999999999999999999988 8899999976
No 132
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.61 E-value=2.1e-08 Score=85.68 Aligned_cols=167 Identities=14% Similarity=0.181 Sum_probs=116.7
Q ss_pred EEEEcCCCCCCCHHH---HHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcc
Q 016936 154 RVFVGGLPYYFTETQ---IKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 230 (380)
Q Consensus 154 ~l~V~nlp~~~t~~~---l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~ 230 (380)
..++.++-..+..+- +...|+.+..+....++++. -+.-.+++|+.|.....-.++...-+++.++.+.+++..+.
T Consensus 98 ~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gt 176 (290)
T KOG0226|consen 98 RPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGT 176 (290)
T ss_pred cccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceeecccc
Confidence 344555533333332 36677777777777787774 47778899999999988888887777788887776665443
Q ss_pred cCCCCChhHHHHHHHHHHHHHHHHHHHhhhcCccccCCCCCccCCccceEEEEeccCCcccCCChHHHHHHHHHHHHhhc
Q 016936 231 ASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECG 310 (380)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~f~ 310 (380)
.-..-.-. .+ ........|-.+.|.++. +.|...|.
T Consensus 177 swedPsl~------------------------------ew-~~~DfRIfcgdlgNevnd-------------~vl~raf~ 212 (290)
T KOG0226|consen 177 SWEDPSLA------------------------------EW-DEDDFRIFCGDLGNEVND-------------DVLARAFK 212 (290)
T ss_pred ccCCcccc------------------------------cC-ccccceeecccccccccH-------------HHHHHHHH
Confidence 21100000 00 000122233345554444 48889999
Q ss_pred ccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCCeEEEEEec
Q 016936 311 KYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYY 368 (380)
Q Consensus 311 ~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~ 368 (380)
+|-.....++++++.++. ++|+| ||.|.++.|+.+|+..|+|..++.|.|++.-.
T Consensus 213 Kfpsf~~akviRdkRTgK-Skgyg--fVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 213 KFPSFQKAKVIRDKRTGK-SKGYG--FVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred hccchhhccccccccccc-cccce--eeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 999999999999998876 67766 99999999999999999999999999987543
No 133
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.59 E-value=8.9e-08 Score=79.66 Aligned_cols=66 Identities=14% Similarity=0.303 Sum_probs=59.0
Q ss_pred HHHHHhhccc-CCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCCeEEEEEecccc
Q 016936 303 EDMREECGKY-GTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 371 (380)
Q Consensus 303 ~~L~~~f~~~-G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~~~~ 371 (380)
..+...|.+| |.|..+.+.++..+|. ++| ||||+|.+++.|.-|-+.||++-++++.|.|.+.+++
T Consensus 64 ~~~~~~~~q~~g~v~r~rlsRnkrTGN-SKg--YAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmppe 130 (214)
T KOG4208|consen 64 TEILNYFRQFGGTVTRFRLSRNKRTGN-SKG--YAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPPE 130 (214)
T ss_pred HHHhhhhhhcCCeeEEEEeecccccCC-cCc--eEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCch
Confidence 4788888888 7888888889888887 554 5599999999999999999999999999999999998
No 134
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.50 E-value=2.5e-07 Score=87.69 Aligned_cols=188 Identities=14% Similarity=0.107 Sum_probs=112.7
Q ss_pred CCCCccccchhhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEE-ecCCCcEEEEEeCCHHHHHH
Q 016936 17 PLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY-INHEKKFAFVEMRTVEEASN 95 (380)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~-~~~~~g~afV~f~~~~~a~~ 95 (380)
|.++.+.++...+...++|+|-|||..+++++|...|+.||.|.+ ++ +....|..||+|-+..+|+.
T Consensus 60 ~~p~~~~np~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~------------ir~t~~~~~~~~v~FyDvR~A~~ 127 (549)
T KOG4660|consen 60 NKPLRPDNPSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIRE------------IRETPNKRGIVFVEFYDVRDAER 127 (549)
T ss_pred CCCCCcCCCCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhh------------hhcccccCceEEEEEeehHhHHH
Confidence 344444566566788999999999999999999999999999543 33 34567999999999999999
Q ss_pred HH-HcCCceecCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHH
Q 016936 96 AM-ALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLE 174 (380)
Q Consensus 96 ai-~l~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~ 174 (380)
|+ +|++..+.|+.|+ ........... .....-++-......+...++-.. ..+++ .|++..+..-+...+.
T Consensus 128 Alk~l~~~~~~~~~~k-~~~~~~~~~~~-----~~~~~~~~~~~~p~a~s~pgg~~~-~~~~g-~l~P~~s~~~~~~~~~ 199 (549)
T KOG4660|consen 128 ALKALNRREIAGKRIK-RPGGARRAMGL-----QSGTSFLNHFGSPLANSPPGGWPR-GQLFG-MLSPTRSSILLEHISS 199 (549)
T ss_pred HHHHHHHHHhhhhhhc-CCCcccccchh-----cccchhhhhccchhhcCCCCCCcC-Cccee-eeccchhhhhhhcchh
Confidence 99 8999999998888 21111111100 000000000000111111222221 22332 2777766655566666
Q ss_pred hcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEccc
Q 016936 175 SFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 231 (380)
Q Consensus 175 ~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~ 231 (380)
-+|.+.. +.. +.-.-.-|+.|.+..++..+.... |+.+.+....+.+...
T Consensus 200 ~~~~~~~-~~~-----~~~~hq~~~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 200 VDGSSPG-RET-----PLLNHQRFVEFADNRSYAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred ccCcccc-ccc-----cchhhhhhhhhccccchhhcccCC-ceecCCCCceEEecCC
Confidence 7777654 321 111114567777777775555432 5666666655555433
No 135
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=3.1e-07 Score=82.12 Aligned_cols=81 Identities=15% Similarity=0.325 Sum_probs=70.0
Q ss_pred CccceEEEEeccCCcccCCChHHHHHHHHHHHHhhcccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHc
Q 016936 275 ETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALS 354 (380)
Q Consensus 275 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~f~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~ 354 (380)
+.+...++-.|+++.++ ||.-+|+.||+|.+|.++++.++|.. .-+|||+|.+.++..+|.-+|+
T Consensus 238 PeNVLFVCKLNPVTtDe------------DLeiIFSrFG~i~sceVIRD~ktgds---LqyaFiEFen~escE~AyFKMd 302 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDE------------DLEIIFSRFGKIVSCEVIRDRKTGDS---LQYAFIEFENKESCEQAYFKMD 302 (479)
T ss_pred CcceEEEEecCCccccc------------chhhHHhhcccceeeeEEecccccch---hheeeeeecchhhHHHHHhhhc
Confidence 44555556667777774 99999999999999999999988863 3478999999999999999999
Q ss_pred CcccCCeEEEEEeccc
Q 016936 355 GRKFGGNTVNAFYYPE 370 (380)
Q Consensus 355 g~~i~gr~l~v~~~~~ 370 (380)
+-.|+.|+|+|.|...
T Consensus 303 NvLIDDrRIHVDFSQS 318 (479)
T KOG0415|consen 303 NVLIDDRRIHVDFSQS 318 (479)
T ss_pred ceeeccceEEeehhhh
Confidence 9999999999999876
No 136
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=5.1e-06 Score=78.34 Aligned_cols=182 Identities=18% Similarity=0.184 Sum_probs=114.3
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC---CCCCce---EEEEEEcChhHHHHHHHHhCCCe
Q 016936 145 AIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRD---TGNSKG---YGFCVYQDPAVTDIACAALNGLK 218 (380)
Q Consensus 145 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~---~~~~~g---~afV~f~~~~~A~~Ai~~l~g~~ 218 (380)
......-++.|||++||+++++++|...|..||.+. +.++.... .--++| |+|+.|+++.+.+.-+.++.-
T Consensus 252 ~~~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~-- 328 (520)
T KOG0129|consen 252 GYRSPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE-- 328 (520)
T ss_pred CCCccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh--
Confidence 334455568999999999999999999999999973 55653211 113556 999999999999888887542
Q ss_pred eCCeEEEEEEcccCC----CCChhHHHHHHHHHHHHHHHHHHHhhhcCccccCCCCCccCCccceEEEEeccCCcccCCC
Q 016936 219 MGDKTLTVRRATASS----GQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALAD 294 (380)
Q Consensus 219 ~~g~~i~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 294 (380)
....+.+....+.. .+.+++.-.. ............+.+++.+.....+-
T Consensus 329 -~~~~~yf~vss~~~k~k~VQIrPW~laD---------------------s~fv~d~sq~lDprrTVFVGgvprpl---- 382 (520)
T KOG0129|consen 329 -GEGNYYFKVSSPTIKDKEVQIRPWVLAD---------------------SDFVLDHNQPIDPRRTVFVGGLPRPL---- 382 (520)
T ss_pred -cccceEEEEecCcccccceeEEeeEecc---------------------chhhhccCcccCccceEEecCCCCcc----
Confidence 33333333322221 1112221100 00111122235666777665532221
Q ss_pred hHHHHHHHHHHHHhhc-ccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHH----HcCcccCCeEEEE
Q 016936 295 DEEYEEILEDMREECG-KYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNA----LSGRKFGGNTVNA 365 (380)
Q Consensus 295 ~~~~~~~~~~L~~~f~-~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~----l~g~~i~gr~l~v 365 (380)
+.++|..+|+ -||.|..+.|..+++-.- .+|-| -|.|.+-..-.+||.+ |+...|.. +|.|
T Consensus 383 ------~A~eLA~imd~lyGgV~yaGIDtD~k~KY-PkGaG--RVtFsnqqsYi~AIsarFvql~h~d~~K-RVEI 448 (520)
T KOG0129|consen 383 ------TAEELAMIMEDLFGGVLYVGIDTDPKLKY-PKGAG--RVTFSNQQAYIKAISARFVQLDHTDIDK-RVEI 448 (520)
T ss_pred ------hHHHHHHHHHHhcCceEEEEeccCcccCC-CCCcc--eeeecccHHHHHHHhhheEEEeccccce-eeee
Confidence 1158888888 899999999999864433 56666 9999999999999873 34444444 4443
No 137
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.43 E-value=3.6e-07 Score=86.39 Aligned_cols=83 Identities=22% Similarity=0.398 Sum_probs=70.8
Q ss_pred hhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceecC
Q 016936 28 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 106 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~g 106 (380)
.....|.|||.+|+..+--.||+.+|++||.+++.+ .|+..+..-.+.|+||...+.++|.+|| .||.+.|+|
T Consensus 401 rs~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAK------VVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHG 474 (940)
T KOG4661|consen 401 RSTLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAK------VVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHG 474 (940)
T ss_pred ccccccceeeeccccchhhhHHHHHHHHhcceecee------eeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcc
Confidence 356678899999999999999999999999988754 3444445555779999999999999999 799999999
Q ss_pred ceEEEecCCC
Q 016936 107 VAVRVRRPTD 116 (380)
Q Consensus 107 ~~i~v~~~~~ 116 (380)
+.|.|..+++
T Consensus 475 rmISVEkaKN 484 (940)
T KOG4661|consen 475 RMISVEKAKN 484 (940)
T ss_pred eeeeeeeccc
Confidence 9999987653
No 138
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.40 E-value=1.7e-07 Score=78.44 Aligned_cols=79 Identities=15% Similarity=0.209 Sum_probs=71.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEE
Q 016936 149 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 228 (380)
Q Consensus 149 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~ 228 (380)
+...++|||.|+-..++++-|.++|-+-|+|..+.|..+++ +..+ ||||.|.++.....|++.+||..+.+..+.+.+
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 34458999999999999999999999999999999998874 5566 999999999999999999999999999999887
Q ss_pred c
Q 016936 229 A 229 (380)
Q Consensus 229 ~ 229 (380)
-
T Consensus 84 r 84 (267)
T KOG4454|consen 84 R 84 (267)
T ss_pred c
Confidence 5
No 139
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.39 E-value=1e-06 Score=83.24 Aligned_cols=80 Identities=23% Similarity=0.404 Sum_probs=67.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEccc
Q 016936 152 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 231 (380)
Q Consensus 152 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~ 231 (380)
..+|||+|||.+++.++|.+.|..||.|....|....-.+...+||||+|.+.+.++.|+++ +...++++++.|+-...
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 34599999999999999999999999999887766432244448999999999999999997 68899999999997655
Q ss_pred C
Q 016936 232 S 232 (380)
Q Consensus 232 ~ 232 (380)
.
T Consensus 367 ~ 367 (419)
T KOG0116|consen 367 G 367 (419)
T ss_pred c
Confidence 3
No 140
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.36 E-value=3.7e-07 Score=82.70 Aligned_cols=179 Identities=15% Similarity=0.142 Sum_probs=130.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcc
Q 016936 151 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 230 (380)
Q Consensus 151 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~ 230 (380)
...+.|++++.....+.+...++..+|......+........++|++.+.|...+.+..|+.........++.+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 45689999999998888889999999988877777766678999999999999999999999644456666666555443
Q ss_pred cCCCCChhHHHHHHHHHHHHHHHHHHHhhhcCccccCCCCCccCCccceEEEEec-cCCcccCCChHHHHHHHHHHHHhh
Q 016936 231 ASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTE-AITADALADDEEYEEILEDMREEC 309 (380)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~L~~~f 309 (380)
........... ........+.+.+.+ .++. ++++|..+|
T Consensus 167 ~~~~~~~n~~~-----------------------------~~~~~~s~~~~~~~~~~f~~-----------~~d~~~~~~ 206 (285)
T KOG4210|consen 167 RRGLRPKNKLS-----------------------------RLSSGPSDTIFFVGELDFSL-----------TRDDLKEHF 206 (285)
T ss_pred cccccccchhc-----------------------------ccccCccccceeeccccccc-----------chHHHhhhc
Confidence 33211100000 000022223332222 2222 236888999
Q ss_pred cccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCCeEEEEEecccccc
Q 016936 310 GKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKY 373 (380)
Q Consensus 310 ~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~~~~~~ 373 (380)
..+|.|..+.++....++. .+ |+|||+|.+...+..|+.. ....+.++.+++.+......
T Consensus 207 ~~~~~i~~~r~~~~~~s~~-~k--g~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 207 VSSGEITSVRLPTDEESGD-SK--GFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred cCcCcceeeccCCCCCccc-hh--hhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCCcc
Confidence 9999999999999887765 44 5559999999999999998 99999999999999887643
No 141
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.35 E-value=3.6e-08 Score=89.86 Aligned_cols=155 Identities=19% Similarity=0.304 Sum_probs=113.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCC-eeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCC-eeCCeEEEEEEcc
Q 016936 153 DRVFVGGLPYYFTETQIKELLESFGT-LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGL-KMGDKTLTVRRAT 230 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~~~F~~~G~-i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~-~~~g~~i~v~~~~ 230 (380)
..+|++||....+..++..+|...-- ...-.++ ..||+||.+.+...|.+|++.++|+ ++.|.++.+....
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 36899999999999999999986421 1111222 2369999999999999999999985 8899999998875
Q ss_pred cCCCCChhHHHHHHHHHHHHHHHHHHHhhhcCccccCCCCCccCCccceEEEEeccCCcccCCChHHHHHHHHHHHHhhc
Q 016936 231 ASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECG 310 (380)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~f~ 310 (380)
++..+.+. +.+.|+... ..| +-|..+..
T Consensus 75 ~kkqrsrk------------------------------------------~Qirnippq------l~w----evld~Ll~ 102 (584)
T KOG2193|consen 75 PKKQRSRK------------------------------------------IQIRNIPPQ------LQW----EVLDSLLA 102 (584)
T ss_pred hHHHHhhh------------------------------------------hhHhcCCHH------HHH----HHHHHHHh
Confidence 43111110 011111110 111 46778899
Q ss_pred ccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCCeEEEEEeccccc
Q 016936 311 KYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDK 372 (380)
Q Consensus 311 ~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~~~~~ 372 (380)
.||+++.|......... ...-|.|.+.+.++.|+..|+|..++...+++.|.|++.
T Consensus 103 qyg~ve~~eqvnt~~et------avvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPdeq 158 (584)
T KOG2193|consen 103 QYGTVENCEQVNTDSET------AVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPDEQ 158 (584)
T ss_pred ccCCHhHhhhhccchHH------HHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCchhh
Confidence 99999999874432221 345689999999999999999999999999999999854
No 142
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.34 E-value=5.9e-06 Score=61.80 Aligned_cols=78 Identities=23% Similarity=0.337 Sum_probs=66.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHh--cCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeC----CeEEEE
Q 016936 153 DRVFVGGLPYYFTETQIKELLES--FGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG----DKTLTV 226 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~~~F~~--~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~i~v 226 (380)
++|.|+|+|-..+.++|.+++.. .|...-+-++.|..++.+.|||||-|.+++.|.+..+.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 58999999999999999998885 355666778888778899999999999999999999999998774 455677
Q ss_pred EEcc
Q 016936 227 RRAT 230 (380)
Q Consensus 227 ~~~~ 230 (380)
.+|.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 7764
No 143
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.31 E-value=7e-07 Score=84.72 Aligned_cols=68 Identities=18% Similarity=0.308 Sum_probs=63.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEE
Q 016936 153 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 225 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~ 225 (380)
++|+|-|||..++.++|+.+|+.||.|..++..+. .+|..||+|.+.-+|++|++.|++.++.|++|.
T Consensus 76 ~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 76 GTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 69999999999999999999999999999776444 467899999999999999999999999999998
No 144
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.30 E-value=1e-06 Score=77.13 Aligned_cols=81 Identities=22% Similarity=0.409 Sum_probs=75.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcc
Q 016936 151 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 230 (380)
Q Consensus 151 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~ 230 (380)
..+.+||+|+.+.++.+++..+|+.||.|..+.++.++..+.++|||||+|.+.+.++.++. |++..+.|+.+.|.+..
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKR 178 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeee
Confidence 34689999999999999999999999999999999999888999999999999999999999 89999999999999865
Q ss_pred cC
Q 016936 231 AS 232 (380)
Q Consensus 231 ~~ 232 (380)
.+
T Consensus 179 ~~ 180 (231)
T KOG4209|consen 179 TN 180 (231)
T ss_pred ee
Confidence 54
No 145
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.27 E-value=7e-08 Score=88.07 Aligned_cols=152 Identities=19% Similarity=0.309 Sum_probs=119.8
Q ss_pred ceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCc-eecCceEE
Q 016936 33 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGI-IFEGVAVR 110 (380)
Q Consensus 33 ~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~-~i~g~~i~ 110 (380)
.++|++||.+.++.+||...|..--. -.+-.+..-.||+||.+.+...|.+|+ .+++. .+.|+.+.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~------------~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e 69 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKI------------PGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQE 69 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccC------------CCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceee
Confidence 46899999999999999999987621 122223345699999999999999999 68774 48899999
Q ss_pred EecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEee-CCC
Q 016936 111 VRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVK-DRD 189 (380)
Q Consensus 111 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~-~~~ 189 (380)
+...-.++.. ++.+-|+|+|....++.+..+..+||.++.|.... ++.
T Consensus 70 ~~~sv~kkqr-------------------------------srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e 118 (584)
T KOG2193|consen 70 VEHSVPKKQR-------------------------------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE 118 (584)
T ss_pred ccchhhHHHH-------------------------------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH
Confidence 9875443221 25799999999999999999999999999886532 322
Q ss_pred CCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEccc
Q 016936 190 TGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 231 (380)
Q Consensus 190 ~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~ 231 (380)
+- ..=|+|.+.++++.|+..++|.++....+.+.+..+
T Consensus 119 ta----vvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 119 TA----VVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPD 156 (584)
T ss_pred HH----HHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCch
Confidence 11 122589999999999999999999999999988543
No 146
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.26 E-value=5.8e-07 Score=81.47 Aligned_cols=180 Identities=15% Similarity=0.071 Sum_probs=120.9
Q ss_pred ceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHHHcCCceecCceEEEe
Q 016936 33 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVR 112 (380)
Q Consensus 33 ~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai~l~~~~i~g~~i~v~ 112 (380)
..|.|.||.+.+|.++++.+|...|.|-....++. +-++.++.....|||.|.+...+..|--|.++.+-++-|.|.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~---~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~ 84 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPN---VDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVR 84 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCC---CCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEE
Confidence 47999999999999999999999999877766665 444555556789999999999999998888888777666555
Q ss_pred cC-CCCCcccc-------ccCCCCCCCCCcccc------ccc-CCCC------------CCCCCCCCCEEEEcCCCCCCC
Q 016936 113 RP-TDYNPTLA-------AALGPGQPSPNLNLA------AVG-LASG------------AIGGAEGPDRVFVGGLPYYFT 165 (380)
Q Consensus 113 ~~-~~~~~~~~-------~~~~~~~~~~~~~~~------~~~-~~~~------------~~~~~~~~~~l~V~nlp~~~t 165 (380)
+. ..-..... .+..+....++.-+. ..+ .... +..-....++++|.+|+..|.
T Consensus 85 p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~ 164 (479)
T KOG4676|consen 85 PYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAI 164 (479)
T ss_pred ecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhc
Confidence 32 22211110 001110000000000 000 0000 001112237899999999999
Q ss_pred HHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeC
Q 016936 166 ETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG 220 (380)
Q Consensus 166 ~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 220 (380)
..++.+.|..+|.|...++-. +....+|-+.|....+...|+.. +|..+.
T Consensus 165 l~e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr~-~gre~k 214 (479)
T KOG4676|consen 165 LPESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALRS-HGRERK 214 (479)
T ss_pred chhhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHHh-cchhhh
Confidence 999999999999998777643 33344677999998888888885 666654
No 147
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.23 E-value=2.5e-06 Score=80.64 Aligned_cols=79 Identities=22% Similarity=0.338 Sum_probs=64.2
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEe--cCCCcEEEEEeCCHHHHHHHHHcCCcee
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI--NHEKKFAFVEMRTVEEASNAMALDGIIF 104 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~--~~~~g~afV~f~~~~~a~~ai~l~~~~i 104 (380)
.+.+...+|||+|||.++++++|+++|.+||.|... =..++. .+...||||+|.+.+++..||..+...+
T Consensus 283 ~~~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~--------~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~i 354 (419)
T KOG0116|consen 283 EPRADGLGIFVKNLPPDATPAELEEVFKQFGPIKEG--------GIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEI 354 (419)
T ss_pred ceeecccceEeecCCCCCCHHHHHHHHhhccccccc--------ceEEeccCCCcCceEEEEEeecchhhhhhhcCcccc
Confidence 345666779999999999999999999999997643 122222 2333899999999999999998888889
Q ss_pred cCceEEEec
Q 016936 105 EGVAVRVRR 113 (380)
Q Consensus 105 ~g~~i~v~~ 113 (380)
.++++.|+.
T Consensus 355 g~~kl~Vee 363 (419)
T KOG0116|consen 355 GGRKLNVEE 363 (419)
T ss_pred CCeeEEEEe
Confidence 999999975
No 148
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=98.16 E-value=9.5e-07 Score=76.11 Aligned_cols=74 Identities=22% Similarity=0.347 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhhc-ccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCCeEEEEEecccccccc
Q 016936 298 YEEILEDMREECG-KYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFN 375 (380)
Q Consensus 298 ~~~~~~~L~~~f~-~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~~~~~~~~ 375 (380)
+.+.-+++..+|+ +||.|+.+.+..+-.... .|-+||.|...++|.+|++.|||++|.|++|.+++.+...|..
T Consensus 78 ~defyEd~f~E~~~kygEiee~~Vc~Nl~~hl----~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~re 152 (260)
T KOG2202|consen 78 EDEFYEDVFTELEDKYGEIEELNVCDNLGDHL----VGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDFRE 152 (260)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhcccchhh----hhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCchhh
Confidence 4455578888888 999999998877654332 4778999999999999999999999999999999999876643
No 149
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.15 E-value=2.2e-05 Score=55.90 Aligned_cols=72 Identities=24% Similarity=0.294 Sum_probs=50.9
Q ss_pred ceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceecCceEEE
Q 016936 33 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRV 111 (380)
Q Consensus 33 ~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~g~~i~v 111 (380)
..|+|.|||.+.+...|+.-+++...--|+ .|..+ ..+.|+|.|.+.+.|.+|. .|+|..+.|++|.|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGG-------kVl~v----~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v 71 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGG-------KVLSV----SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISV 71 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT---------EEE------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCC-------EEEEE----eCCEEEEEeCCHHHHHHHHHhhcccccccceEEE
Confidence 468999999999999999888876553333 27776 4688999999999999999 89999999999999
Q ss_pred ecCC
Q 016936 112 RRPT 115 (380)
Q Consensus 112 ~~~~ 115 (380)
.+..
T Consensus 72 ~~~~ 75 (90)
T PF11608_consen 72 SFSP 75 (90)
T ss_dssp ESS-
T ss_pred EEcC
Confidence 8753
No 150
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.14 E-value=5.6e-06 Score=80.58 Aligned_cols=81 Identities=17% Similarity=0.315 Sum_probs=70.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeC---CCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEE
Q 016936 151 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKD---RDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 227 (380)
Q Consensus 151 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~---~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~ 227 (380)
..+++||+||++.++++.|...|..||+|..++++-- -...+.+.||||-|.+..+|++|++.|+|..+.++.+++.
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 3478999999999999999999999999998877542 1234566799999999999999999999999999999999
Q ss_pred Eccc
Q 016936 228 RATA 231 (380)
Q Consensus 228 ~~~~ 231 (380)
|+..
T Consensus 253 Wgk~ 256 (877)
T KOG0151|consen 253 WGKA 256 (877)
T ss_pred cccc
Confidence 9854
No 151
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.11 E-value=2e-06 Score=75.34 Aligned_cols=81 Identities=27% Similarity=0.306 Sum_probs=69.6
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHHHcCCceecC
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEG 106 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai~l~~~~i~g 106 (380)
+...+.+.|||+|+...+|.+++..+|+.||.+.. +++..+-...+.+|||||+|.+.+.+++++.|++..|.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~------~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~ 169 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINR------VTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPG 169 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccc------eeeeccccCCCcceeEEEecccHhhhHHHhhcCCccccc
Confidence 67889999999999999999999999999998643 222333334567899999999999999999999999999
Q ss_pred ceEEEec
Q 016936 107 VAVRVRR 113 (380)
Q Consensus 107 ~~i~v~~ 113 (380)
+.+.+.+
T Consensus 170 ~~i~vt~ 176 (231)
T KOG4209|consen 170 PAIEVTL 176 (231)
T ss_pred ccceeee
Confidence 9999986
No 152
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.07 E-value=2.3e-05 Score=55.81 Aligned_cols=64 Identities=19% Similarity=0.409 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhhcccC-CeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCCeEEEEEeccccc
Q 016936 296 EEYEEILEDMREECGKYG-TLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDK 372 (380)
Q Consensus 296 ~~~~~~~~~L~~~f~~~G-~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~~~~~ 372 (380)
.+...+...|++++.-+| .|.+|. + +.|+|.|.+.+.|.+|...|+|..+-|++|.|+|.+...
T Consensus 14 ~d~~~I~~RL~qLsdNCGGkVl~v~-------~------~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~r 78 (90)
T PF11608_consen 14 KDPSSIKNRLRQLSDNCGGKVLSVS-------G------GTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKNR 78 (90)
T ss_dssp S-HHHHHHHHHHHHHTTT--EEE---------T------T-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S-
T ss_pred CCHHHHHHHHHHHhhccCCEEEEEe-------C------CEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCcc
Confidence 345667789999999886 566552 1 478999999999999999999999999999999997754
No 153
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.06 E-value=1.9e-05 Score=69.07 Aligned_cols=81 Identities=16% Similarity=0.226 Sum_probs=65.4
Q ss_pred hhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEe---cCCCcEEEEEeCCHHHHHHHH-HcCCce
Q 016936 28 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI---NHEKKFAFVEMRTVEEASNAM-ALDGII 103 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~---~~~~g~afV~f~~~~~a~~ai-~l~~~~ 103 (380)
.+..+.+|+|.|||+.++++||+++|..||.+. -..+.. +.+.|+|-|.|...+||..|+ .+++..
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~----------r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ 148 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELK----------RVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVA 148 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccce----------EEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcc
Confidence 344557899999999999999999999998531 223332 356799999999999999999 899999
Q ss_pred ecCceEEEecCCCCC
Q 016936 104 FEGVAVRVRRPTDYN 118 (380)
Q Consensus 104 i~g~~i~v~~~~~~~ 118 (380)
+.|+++++.......
T Consensus 149 ldG~~mk~~~i~~~~ 163 (243)
T KOG0533|consen 149 LDGRPMKIEIISSPS 163 (243)
T ss_pred cCCceeeeEEecCcc
Confidence 999999887654433
No 154
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.04 E-value=1.8e-05 Score=59.26 Aligned_cols=79 Identities=11% Similarity=0.180 Sum_probs=57.8
Q ss_pred ceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceecC----c
Q 016936 33 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG----V 107 (380)
Q Consensus 33 ~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~g----~ 107 (380)
+||+|+|||-..|.++|.+.+..... +..++ .=.-.+.....+.|||||.|.++++|.+.. ..+|..|.. +
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~--g~yDF--~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~K 77 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFK--GKYDF--FYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKK 77 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhcc--CcceE--EEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCc
Confidence 68999999999999999999998632 11000 000112223346799999999999999999 899988863 6
Q ss_pred eEEEecCC
Q 016936 108 AVRVRRPT 115 (380)
Q Consensus 108 ~i~v~~~~ 115 (380)
.+.|.+|.
T Consensus 78 vc~i~yAr 85 (97)
T PF04059_consen 78 VCEISYAR 85 (97)
T ss_pred EEEEehhH
Confidence 67887764
No 155
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.97 E-value=1.1e-05 Score=78.68 Aligned_cols=78 Identities=23% Similarity=0.366 Sum_probs=66.1
Q ss_pred hcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEe--c-------CCCcEEEEEeCCHHHHHHHH-H
Q 016936 29 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI--N-------HEKKFAFVEMRTVEEASNAM-A 98 (380)
Q Consensus 29 ~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~--~-------~~~g~afV~f~~~~~a~~ai-~ 98 (380)
+...+.|||+||++.++++.|...|.+||+| ..+++ . ..+.|+||.|.+..||++|+ .
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPl------------asvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~ 238 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPL------------ASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKE 238 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcc------------cceeeecccchhhhccccccceeeehhhhhHHHHHHH
Confidence 3455779999999999999999999999984 44443 2 23579999999999999999 8
Q ss_pred cCCceecCceEEEecCCCCC
Q 016936 99 LDGIIFEGVAVRVRRPTDYN 118 (380)
Q Consensus 99 l~~~~i~g~~i~v~~~~~~~ 118 (380)
|+|+.+.+.++++.|...-.
T Consensus 239 lqg~iv~~~e~K~gWgk~V~ 258 (877)
T KOG0151|consen 239 LQGIIVMEYEMKLGWGKAVP 258 (877)
T ss_pred hcceeeeeeeeeeccccccc
Confidence 99999999999999975543
No 156
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.77 E-value=5.3e-05 Score=58.01 Aligned_cols=69 Identities=23% Similarity=0.347 Sum_probs=44.5
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCC-----CeeCCeEEEEEE
Q 016936 154 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNG-----LKMGDKTLTVRR 228 (380)
Q Consensus 154 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g-----~~~~g~~i~v~~ 228 (380)
.|.|.+++..++.++|++.|+.||.|..|.+.++. ..|+|.|.+++.|++|+..+.. ..+.+..+.++.
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 68899999999999999999999999999997653 2699999999999999998743 355666665554
No 157
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.73 E-value=4.1e-05 Score=69.30 Aligned_cols=85 Identities=22% Similarity=0.379 Sum_probs=76.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCee--------EEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeC
Q 016936 149 AEGPDRVFVGGLPYYFTETQIKELLESFGTLH--------GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG 220 (380)
Q Consensus 149 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 220 (380)
.....+|||.++|..+++++|.++|.++|.|. .+.+.+++.+++++|-|.|.|.+...|+.|+.-++++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 34446899999999999999999999999985 3677888889999999999999999999999999999999
Q ss_pred CeEEEEEEcccCC
Q 016936 221 DKTLTVRRATASS 233 (380)
Q Consensus 221 g~~i~v~~~~~~~ 233 (380)
+..|.|..+..+.
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999999887654
No 158
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.69 E-value=9.6e-05 Score=66.06 Aligned_cols=65 Identities=20% Similarity=0.369 Sum_probs=52.0
Q ss_pred HHhhcccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCCeEEEEEeccc
Q 016936 306 REECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPE 370 (380)
Q Consensus 306 ~~~f~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~~~ 370 (380)
.++|++||.|..|.+-+.-.+.....+..-+||.|.+.+||.+||+..+|..++||.|++.|-+-
T Consensus 138 ~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~lkatYGTT 202 (480)
T COG5175 138 HEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVLKATYGTT 202 (480)
T ss_pred hhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceEeeecCch
Confidence 48899999999999876543222222222249999999999999999999999999999999764
No 159
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.59 E-value=0.00022 Score=47.18 Aligned_cols=52 Identities=17% Similarity=0.290 Sum_probs=42.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHH
Q 016936 153 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIAC 211 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai 211 (380)
+.|-|.+.+.. ..+.+..+|..||+|..+.+... ..+.+|.|.++.+|++|+
T Consensus 2 ~wI~V~Gf~~~-~~~~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPD-LAEEVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECch-HHHHHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 57899999877 45667779999999999887522 338999999999999985
No 160
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.59 E-value=0.00019 Score=47.51 Aligned_cols=53 Identities=17% Similarity=0.501 Sum_probs=44.8
Q ss_pred cceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH
Q 016936 32 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM 97 (380)
Q Consensus 32 ~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai 97 (380)
++.|-|.|.|++.. +++..+|.+||. |............||.|.++.+|++|+
T Consensus 1 ~~wI~V~Gf~~~~~-~~vl~~F~~fGe------------I~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLA-EEVLEHFASFGE------------IVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHH-HHHHHHHHhcCC------------EEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 36789999997766 455569999998 788888888899999999999999985
No 161
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.45 E-value=0.0002 Score=54.81 Aligned_cols=68 Identities=24% Similarity=0.285 Sum_probs=43.1
Q ss_pred ceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-Hc--C---CceecC
Q 016936 33 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-AL--D---GIIFEG 106 (380)
Q Consensus 33 ~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l--~---~~~i~g 106 (380)
+.|+|.+++..++-++|++.|++||. |.-|.+......|||.|.+.++|++|+ .+ . +..+.+
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~------------V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~ 69 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGE------------VAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKG 69 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--------------EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTS
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCC------------cceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcC
Confidence 57899999999999999999999987 777777788889999999999999999 42 2 345666
Q ss_pred ceEEEe
Q 016936 107 VAVRVR 112 (380)
Q Consensus 107 ~~i~v~ 112 (380)
..+.+.
T Consensus 70 ~~~~~~ 75 (105)
T PF08777_consen 70 KEVTLE 75 (105)
T ss_dssp SSEEEE
T ss_pred ceEEEE
Confidence 666655
No 162
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.44 E-value=0.00075 Score=61.75 Aligned_cols=204 Identities=12% Similarity=0.113 Sum_probs=114.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC---CCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEE
Q 016936 152 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT---GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 228 (380)
Q Consensus 152 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~---~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~ 228 (380)
...|-|.||.+.++.++++.+|.-.|.|..+.|+...+. ....-.|||.|.+...+..|... -...+-++.|.|.+
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhL-tntvfvdraliv~p 85 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHL-TNTVFVDRALIVRP 85 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhh-ccceeeeeeEEEEe
Confidence 348999999999999999999999999999998774321 12334799999999999988874 45566667776665
Q ss_pred cccCCCCChhHHHHHHHHHHHHHHHHHHHhhhcCccccCCCCCcc--CCccceEEEEeccCCcc------------cCCC
Q 016936 229 ATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLF--GETLAKVLCLTEAITAD------------ALAD 294 (380)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~------------~~~~ 294 (380)
+-... .+..... .........+.+. .++.-+++ ..++. ...+..++.-. .+++. ..+.
T Consensus 86 ~~~~~---~p~r~af-~~l~~~navprll--~pdg~Lp~-~~~lt~~nh~p~ailktP-~Lp~~~~A~kleeirRt~~v~ 157 (479)
T KOG4676|consen 86 YGDEV---IPDRFAF-VELADQNAVPRLL--PPDGVLPG-DRPLTKINHSPNAILKTP-ELPPQAAAKKLEEIRRTREVQ 157 (479)
T ss_pred cCCCC---CccHHHH-HhcCccccccccc--CCCCccCC-CCccccccCCccceecCC-CCChHhhhhhhHHHHhhhhhh
Confidence 43221 1111100 0000000000000 00000000 00110 01111111111 01100 0112
Q ss_pred hHHHHHHHHHHHHhhcccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCCeEEEEEeccccc
Q 016936 295 DEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDK 372 (380)
Q Consensus 295 ~~~~~~~~~~L~~~f~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~~~~~ 372 (380)
+.....+..++.+.|..+|.|.+....-..... ++-|+|..-.....|+. ++|+.+.-...+...+.+++
T Consensus 158 sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~-------~c~~sf~~qts~~halr-~~gre~k~qhsr~ai~kP~k 227 (479)
T KOG4676|consen 158 SLISAAILPESGESFERKGEVSYAHTASKSRSS-------SCSHSFRKQTSSKHALR-SHGRERKRQHSRRAIIKPHK 227 (479)
T ss_pred cchhhhcchhhhhhhhhcchhhhhhhhccCCCc-------chhhhHhhhhhHHHHHH-hcchhhhhhhhhhhhcCccc
Confidence 333344557888999999999987775544322 34589998888888888 58887775555554444433
No 163
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.39 E-value=0.00046 Score=59.75 Aligned_cols=100 Identities=21% Similarity=0.257 Sum_probs=81.3
Q ss_pred HHHHHH-HcCCceecCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHH
Q 016936 92 EASNAM-ALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIK 170 (380)
Q Consensus 92 ~a~~ai-~l~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~ 170 (380)
-|+.|- +|.++...++.++|.++.. ..|||.||+..++.+.+.
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~------------------------------------a~l~V~nl~~~~sndll~ 49 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH------------------------------------AELYVVNLMQGASNDLLE 49 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc------------------------------------ceEEEEecchhhhhHHHH
Confidence 355666 7999999999999998554 389999999999999999
Q ss_pred HHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhC--C--CeeCCeEEEEEE
Q 016936 171 ELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALN--G--LKMGDKTLTVRR 228 (380)
Q Consensus 171 ~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~--g--~~~~g~~i~v~~ 228 (380)
..|+.||+|..-.+..| +.++..+-++|.|...-.|.+|...+. + ....+++.-|.+
T Consensus 50 ~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 50 QAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred HhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 99999999988766666 468888999999999999999999874 2 233455555554
No 164
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.32 E-value=0.00059 Score=61.16 Aligned_cols=80 Identities=15% Similarity=0.296 Sum_probs=62.9
Q ss_pred CEEEEcCCCCCCCHHH----H--HHHHHhcCCeeEEEEeeCC-CCCCCceE--EEEEEcChhHHHHHHHHhCCCeeCCeE
Q 016936 153 DRVFVGGLPYYFTETQ----I--KELLESFGTLHGFDLVKDR-DTGNSKGY--GFCVYQDPAVTDIACAALNGLKMGDKT 223 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~----l--~~~F~~~G~i~~v~l~~~~-~~~~~~g~--afV~f~~~~~A~~Ai~~l~g~~~~g~~ 223 (380)
.-+||-+||+.+..++ | .++|.+||.|..+.+-+.- ......+. .+|.|.+.++|.+||+..+|..++|+.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 5799999988777665 2 4799999999998875542 11122222 389999999999999999999999999
Q ss_pred EEEEEcccC
Q 016936 224 LTVRRATAS 232 (380)
Q Consensus 224 i~v~~~~~~ 232 (380)
|+..+...+
T Consensus 195 lkatYGTTK 203 (480)
T COG5175 195 LKATYGTTK 203 (480)
T ss_pred EeeecCchH
Confidence 999986554
No 165
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.26 E-value=0.0015 Score=62.63 Aligned_cols=88 Identities=20% Similarity=0.357 Sum_probs=66.5
Q ss_pred CccceEEEEeccCCcccCCChHHHHHHHHHHHHhhcccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHc
Q 016936 275 ETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALS 354 (380)
Q Consensus 275 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~f~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~ 354 (380)
..-..|+++.+..-.. ..-....+.-|..+|+++|+|+.+.++.++.+| +.|++|++|.+..+|+.|++.||
T Consensus 55 eg~D~vVvv~g~PvV~----~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg----tkG~lf~E~~~~~~A~~aVK~l~ 126 (698)
T KOG2314|consen 55 EGFDSVVVVDGAPVVG----PARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG----TKGYLFVEYASMRDAKKAVKSLN 126 (698)
T ss_pred CCcceEEEECCCcccC----hhHHHHHHHHHHHHHHhhccccceeeccCccCC----eeeEEEEEecChhhHHHHHHhcc
Confidence 4556677776643322 222445556788999999999999999888766 35888999999999999999999
Q ss_pred CcccCC-eEEEEEeccc
Q 016936 355 GRKFGG-NTVNAFYYPE 370 (380)
Q Consensus 355 g~~i~g-r~l~v~~~~~ 370 (380)
|+.+.. ++..|....+
T Consensus 127 G~~ldknHtf~v~~f~d 143 (698)
T KOG2314|consen 127 GKRLDKNHTFFVRLFKD 143 (698)
T ss_pred cceecccceEEeehhhh
Confidence 999865 6666655443
No 166
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.25 E-value=0.0011 Score=49.97 Aligned_cols=72 Identities=22% Similarity=0.304 Sum_probs=52.4
Q ss_pred cccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEE------------EecCCCcEEEEEeCCHHHHHHHH
Q 016936 30 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNV------------YINHEKKFAFVEMRTVEEASNAM 97 (380)
Q Consensus 30 ~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~------------~~~~~~g~afV~f~~~~~a~~ai 97 (380)
...+-|.|=+.|+. ....|.++|++||.| +... ..........|.|+++.+|.+||
T Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~I-----------le~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL 71 (100)
T PF05172_consen 4 DSETWVTVFGFPPS-ASNQVLRHFSSFGTI-----------LEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL 71 (100)
T ss_dssp GGCCEEEEE---GG-GHHHHHHHHHCCS-E-----------ECEEGGG----------E-CCTTEEEEEESSHHHHHHHH
T ss_pred cCCeEEEEEccCHH-HHHHHHHHHHhcceE-----------EEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH
Confidence 45667889999977 667889999999985 2232 34556789999999999999999
Q ss_pred HcCCceecCceE-EEec
Q 016936 98 ALDGIIFEGVAV-RVRR 113 (380)
Q Consensus 98 ~l~~~~i~g~~i-~v~~ 113 (380)
..||..+.|.-+ =|.+
T Consensus 72 ~~NG~i~~g~~mvGV~~ 88 (100)
T PF05172_consen 72 QKNGTIFSGSLMVGVKP 88 (100)
T ss_dssp TTTTEEETTCEEEEEEE
T ss_pred HhCCeEEcCcEEEEEEE
Confidence 999999998654 4544
No 167
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.22 E-value=0.00037 Score=63.24 Aligned_cols=90 Identities=19% Similarity=0.138 Sum_probs=72.4
Q ss_pred hcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCC--CCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceec
Q 016936 29 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSA--GPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFE 105 (380)
Q Consensus 29 ~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~--~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~ 105 (380)
....-+|||-+||..+++.+|.++|.++|.|.--+.- +...+.++.++.+.|+-|.|.|.+...|+.|+ -+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 5677789999999999999999999999987533222 12222334556678899999999999999999 79999999
Q ss_pred CceEEEecCCCCC
Q 016936 106 GVAVRVRRPTDYN 118 (380)
Q Consensus 106 g~~i~v~~~~~~~ 118 (380)
+.+|+|-.+...+
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999998766554
No 168
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.22 E-value=0.0029 Score=50.70 Aligned_cols=60 Identities=18% Similarity=0.386 Sum_probs=48.0
Q ss_pred HHHHHHHHhhcccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCCeEEEEEecccc
Q 016936 300 EILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 371 (380)
Q Consensus 300 ~~~~~L~~~f~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~~~~ 371 (380)
.....|.+.|..||.+.-+++.. +.-+|.|.+-+.|.+|+. |+|..++|+.|+|...+++
T Consensus 48 ~l~~~ll~~~~~~GevvLvRfv~-----------~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 48 NLMDELLQKFAQYGEVVLVRFVG-----------DTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHHHHHCCS-ECEEEEET-----------TCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE----
T ss_pred HHHHHHHHHHHhCCceEEEEEeC-----------CeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCcc
Confidence 34568999999999999887764 245999999999999998 7999999999999998764
No 169
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.21 E-value=0.00032 Score=63.10 Aligned_cols=77 Identities=25% Similarity=0.389 Sum_probs=67.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCC--eeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEc
Q 016936 153 DRVFVGGLPYYFTETQIKELLESFGT--LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 229 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~~~F~~~G~--i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~ 229 (380)
-.+||+||-|.+|.+||.+.....|- +.++++..++.+|+++|||+|...+.....+.|+.|-.+++.|..=.|...
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 46999999999999999999988774 778899999889999999999999999999999999888998876555443
No 170
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.07 E-value=0.002 Score=48.56 Aligned_cols=75 Identities=20% Similarity=0.283 Sum_probs=51.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEE-EeeCC------CCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEE
Q 016936 153 DRVFVGGLPYYFTETQIKELLESFGTLHGFD-LVKDR------DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 225 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~-l~~~~------~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~ 225 (380)
+.|.|=+.|.. ....|..+|++||.|.+.. +.++. ..-.....--|+|.++.+|.+|+.. ||..+.|..|-
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~mv 84 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSLMV 84 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEEE
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEEE
Confidence 57899999988 7788999999999997764 11100 0011234788999999999999996 99999887664
Q ss_pred -EEEc
Q 016936 226 -VRRA 229 (380)
Q Consensus 226 -v~~~ 229 (380)
|.++
T Consensus 85 GV~~~ 89 (100)
T PF05172_consen 85 GVKPC 89 (100)
T ss_dssp EEEE-
T ss_pred EEEEc
Confidence 5565
No 171
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.03 E-value=0.00046 Score=59.69 Aligned_cols=71 Identities=21% Similarity=0.443 Sum_probs=60.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC--------CCCce----EEEEEEcChhHHHHHHHHhCCCeeC
Q 016936 153 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT--------GNSKG----YGFCVYQDPAVTDIACAALNGLKMG 220 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~--------~~~~g----~afV~f~~~~~A~~Ai~~l~g~~~~ 220 (380)
.-||+++||+.....-|+++|+.||.|.+|.|.....+ |.+.. -|+|+|.+--.|.++.+.||+..|+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 57999999999999999999999999999988775444 22222 3889999999999999999999998
Q ss_pred CeE
Q 016936 221 DKT 223 (380)
Q Consensus 221 g~~ 223 (380)
|++
T Consensus 155 gkk 157 (278)
T KOG3152|consen 155 GKK 157 (278)
T ss_pred CCC
Confidence 875
No 172
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.83 E-value=0.0054 Score=58.94 Aligned_cols=77 Identities=25% Similarity=0.349 Sum_probs=62.8
Q ss_pred CCCEEEEcCCCCCCCH------HHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeC-CeE
Q 016936 151 GPDRVFVGGLPYYFTE------TQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG-DKT 223 (380)
Q Consensus 151 ~~~~l~V~nlp~~~t~------~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~-g~~ 223 (380)
-...|+|.|+|---.. .-|.++|+++|.+....++.+.. |..+|+.|++|.+..+|+.|++.|||+.+. .+.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 3368999999865332 24678999999999999998865 669999999999999999999999999885 456
Q ss_pred EEEEE
Q 016936 224 LTVRR 228 (380)
Q Consensus 224 i~v~~ 228 (380)
..|..
T Consensus 136 f~v~~ 140 (698)
T KOG2314|consen 136 FFVRL 140 (698)
T ss_pred EEeeh
Confidence 66654
No 173
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.77 E-value=0.0035 Score=58.25 Aligned_cols=68 Identities=15% Similarity=0.287 Sum_probs=55.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeC---CCC--CC--------CceEEEEEEcChhHHHHHHHHhCCCe
Q 016936 152 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKD---RDT--GN--------SKGYGFCVYQDPAVTDIACAALNGLK 218 (380)
Q Consensus 152 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~---~~~--~~--------~~g~afV~f~~~~~A~~Ai~~l~g~~ 218 (380)
.++|.+.|||.+-..+.|.++|+.+|.|..|+|..= +.+ +. .+-||+|+|...+.|.+|.+.++...
T Consensus 231 srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e~ 310 (484)
T KOG1855|consen 231 SRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPEQ 310 (484)
T ss_pred cceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchhh
Confidence 479999999999999999999999999999998653 222 22 24579999999999999999886543
Q ss_pred e
Q 016936 219 M 219 (380)
Q Consensus 219 ~ 219 (380)
-
T Consensus 311 ~ 311 (484)
T KOG1855|consen 311 N 311 (484)
T ss_pred h
Confidence 3
No 174
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.66 E-value=0.0061 Score=53.87 Aligned_cols=64 Identities=16% Similarity=0.153 Sum_probs=52.6
Q ss_pred HHHHHHHHhcCCeeEEEEeeCCCCCCC-ceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcc
Q 016936 167 TQIKELLESFGTLHGFDLVKDRDTGNS-KGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 230 (380)
Q Consensus 167 ~~l~~~F~~~G~i~~v~l~~~~~~~~~-~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~ 230 (380)
+++.+.+++||.|..|.|..++..-.. .---||+|.+.++|.+|+-.|||.+|+|+.++..+..
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 578889999999999988877432111 1137999999999999999999999999999988754
No 175
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.64 E-value=0.0084 Score=42.94 Aligned_cols=54 Identities=19% Similarity=0.372 Sum_probs=42.5
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhC
Q 016936 154 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALN 215 (380)
Q Consensus 154 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~ 215 (380)
.||--.+|..|...||.++|+.||.| .|.++.+- -|||.+.+.+.|..|+..++
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEeCchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 56655599999999999999999998 47777652 69999999999999999875
No 176
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.30 E-value=0.0036 Score=58.14 Aligned_cols=63 Identities=24% Similarity=0.296 Sum_probs=52.2
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCC-------------------CcEEEEEe
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE-------------------KKFAFVEM 87 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~-------------------~g~afV~f 87 (380)
.++.++|+|.+.|||.+-..+.|.++|+.+|. |..++|.+- +-||+|+|
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~------------IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEy 293 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGS------------IKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEY 293 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccc------------eeeeeecCCCCCCcccccCCccchhhhhhhhhhhhh
Confidence 34568999999999999999999999999998 555555432 46999999
Q ss_pred CCHHHHHHHHHcCC
Q 016936 88 RTVEEASNAMALDG 101 (380)
Q Consensus 88 ~~~~~a~~ai~l~~ 101 (380)
...+.|.+|.++.+
T Consensus 294 e~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 294 EEVEAARKARELLN 307 (484)
T ss_pred hhhHHHHHHHHhhc
Confidence 99999999996543
No 177
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.27 E-value=0.024 Score=45.49 Aligned_cols=56 Identities=20% Similarity=0.367 Sum_probs=44.9
Q ss_pred HHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 016936 168 QIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 232 (380)
Q Consensus 168 ~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~ 232 (380)
+|.+.|..||.+.=+++..+ .-+|.|.+-.+|-+|+. ++|.++.|+.|.|+..++.
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE----
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCcc
Confidence 77888999998877777654 47899999999999999 6999999999999986543
No 178
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.20 E-value=0.016 Score=49.08 Aligned_cols=62 Identities=15% Similarity=0.311 Sum_probs=47.6
Q ss_pred HHHHHHhhcccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHc--CcccCCeEEEEEeccccc
Q 016936 302 LEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALS--GRKFGGNTVNAFYYPEDK 372 (380)
Q Consensus 302 ~~~L~~~f~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~--g~~i~gr~l~v~~~~~~~ 372 (380)
+..|+++|..|+.+.....++. ++-+.|.|.+.++|.+|.+.|+ +..++|..+++.|+....
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~s---------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKS---------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETT---------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred HHHHHHHHHhcCCceEEEEcCC---------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 3689999999999998888763 4578999999999999999999 999999999999996543
No 179
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.12 E-value=0.04 Score=37.42 Aligned_cols=54 Identities=19% Similarity=0.309 Sum_probs=44.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhc---CCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHh
Q 016936 153 DRVFVGGLPYYFTETQIKELLESF---GTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 214 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~~~F~~~---G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l 214 (380)
..|.|.|+. ..+.++|+.+|..| .....+.++.|. -|=|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 589999985 47899999999998 235578898774 3779999999999999764
No 180
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.00 E-value=0.004 Score=54.03 Aligned_cols=66 Identities=21% Similarity=0.315 Sum_probs=53.4
Q ss_pred ccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecC--------------C--C--cEEEEEeCCHHH
Q 016936 31 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH--------------E--K--KFAFVEMRTVEE 92 (380)
Q Consensus 31 ~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~--------------~--~--g~afV~f~~~~~ 92 (380)
..-.||+++||+.+...-|+++|++||.| -.+.+-+ + . .-|+|+|.+...
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeV------------GRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~Krv 140 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEV------------GRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRV 140 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhcccc------------ceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHH
Confidence 55789999999999999999999999984 3333321 1 1 238999999999
Q ss_pred HHHHH-HcCCceecCce
Q 016936 93 ASNAM-ALDGIIFEGVA 108 (380)
Q Consensus 93 a~~ai-~l~~~~i~g~~ 108 (380)
|..+. .||+..|.|++
T Consensus 141 AK~iAe~Lnn~~Iggkk 157 (278)
T KOG3152|consen 141 AKRIAELLNNTPIGGKK 157 (278)
T ss_pred HHHHHHHhCCCccCCCC
Confidence 99988 79999999965
No 181
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.96 E-value=0.045 Score=37.17 Aligned_cols=56 Identities=16% Similarity=0.249 Sum_probs=41.9
Q ss_pred ccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH
Q 016936 31 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM 97 (380)
Q Consensus 31 ~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai 97 (380)
...+|+|+|+. +++.+||+.+|..|... .....+.+..+. .|=|.|.+.+.|.+||
T Consensus 4 rpeavhirGvd-~lsT~dI~~y~~~y~~~---------~~~~~IEWIdDt-ScNvvf~d~~~A~~AL 59 (62)
T PF10309_consen 4 RPEAVHIRGVD-ELSTDDIKAYFSEYFDE---------EGPFRIEWIDDT-SCNVVFKDEETAARAL 59 (62)
T ss_pred eeceEEEEcCC-CCCHHHHHHHHHHhccc---------CCCceEEEecCC-cEEEEECCHHHHHHHH
Confidence 45689999995 89999999999999221 113455655443 3667799999999999
No 182
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.94 E-value=0.0045 Score=53.87 Aligned_cols=65 Identities=11% Similarity=0.225 Sum_probs=52.1
Q ss_pred HHHHHHHH-hcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 016936 167 TQIKELLE-SFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 232 (380)
Q Consensus 167 ~~l~~~F~-~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~ 232 (380)
++|...|+ +||.|+++.+-.+. ...-.|-++|.|..+++|++|++.||+..+.|++|.+.+....
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 45555566 89999988665542 2345677999999999999999999999999999999986543
No 183
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.57 E-value=0.011 Score=55.73 Aligned_cols=80 Identities=16% Similarity=0.167 Sum_probs=68.7
Q ss_pred chhhhcccceEEEcCCCCcC-cHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHHHcCCce
Q 016936 25 TQQATRHARRVYVGGLPPLA-NEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGII 103 (380)
Q Consensus 25 ~~~~~~~~~~v~V~nLp~~~-t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai~l~~~~ 103 (380)
+-....+.|.+.+.-.|..+ +..+|..+|.+||. |.++.+..+.-.|.|.|.+..+|-+|...++..
T Consensus 365 ~g~~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~------------i~n~qv~~~~~~a~vTF~t~aeag~a~~s~~av 432 (526)
T KOG2135|consen 365 PGHAVVDHSPLALEKSPFGLNTIADLNPHFAQFGE------------IENIQVDYSSLHAVVTFKTRAEAGEAYASHGAV 432 (526)
T ss_pred CcchhcccchhhhhccCCCCchHhhhhhhhhhcCc------------cccccccCchhhheeeeeccccccchhccccce
Confidence 33566788888888888887 78999999999998 666666666677999999999999999999999
Q ss_pred ecCceEEEecCCC
Q 016936 104 FEGVAVRVRRPTD 116 (380)
Q Consensus 104 i~g~~i~v~~~~~ 116 (380)
|.++.|+|.|...
T Consensus 433 lnnr~iKl~whnp 445 (526)
T KOG2135|consen 433 LNNRFIKLFWHNP 445 (526)
T ss_pred ecCceeEEEEecC
Confidence 9999999999665
No 184
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.85 E-value=0.017 Score=54.45 Aligned_cols=60 Identities=10% Similarity=0.269 Sum_probs=51.7
Q ss_pred HHHHHHhhcccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCCeEEEEEecccc
Q 016936 302 LEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 371 (380)
Q Consensus 302 ~~~L~~~f~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~~~~ 371 (380)
.++|...|.+||.|+.|.+..... -|.|.|.+..+|-+|.. .++..|++|.|+|.|....
T Consensus 387 ~a~ln~hfA~fG~i~n~qv~~~~~---------~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 387 IADLNPHFAQFGEIENIQVDYSSL---------HAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred HhhhhhhhhhcCccccccccCchh---------hheeeeeccccccchhc-cccceecCceeEEEEecCC
Confidence 469999999999999999965422 34999999999988887 4999999999999998773
No 185
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=94.84 E-value=0.02 Score=55.45 Aligned_cols=78 Identities=13% Similarity=0.149 Sum_probs=63.4
Q ss_pred hhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceec-
Q 016936 28 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFE- 105 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~- 105 (380)
.-..+..|+|.||-.-.|.-+|+.++.+-|.+ |...-+-+-|..|||.|.+.++|.... +|||..|-
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~-----------Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~ 508 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGN-----------VEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPP 508 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCc-----------hHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCC
Confidence 55778899999999999999999999987764 555544456788999999999999999 89998773
Q ss_pred --CceEEEecCCC
Q 016936 106 --GVAVRVRRPTD 116 (380)
Q Consensus 106 --g~~i~v~~~~~ 116 (380)
.+.|.+.+...
T Consensus 509 sNPK~L~adf~~~ 521 (718)
T KOG2416|consen 509 SNPKHLIADFVRA 521 (718)
T ss_pred CCCceeEeeecch
Confidence 36677776543
No 186
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.66 E-value=0.016 Score=52.62 Aligned_cols=62 Identities=16% Similarity=0.270 Sum_probs=50.0
Q ss_pred HhhcccCCeEEEEecCCC--CCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCCeEEEEEeccc
Q 016936 307 EECGKYGTLVNVVIPRPD--QNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPE 370 (380)
Q Consensus 307 ~~f~~~G~I~~v~i~~~~--~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~~~ 370 (380)
+.|.+||.|..|.+.++. ..+.... .-+||.|...++|..||+..+|..+.|+.|+++|.+-
T Consensus 99 eyfgqygki~ki~~~~~~S~~s~~~~~--~s~yITy~~~eda~rci~~v~g~~~dg~~lka~~gtt 162 (327)
T KOG2068|consen 99 EYFGQYGKINKIVKNKDPSSSSSSGGT--CSVYITYEEEEDADRCIDDVDGFVDDGRALKASLGTT 162 (327)
T ss_pred ccccccccceEEeecCCcccccCCCCC--CcccccccchHhhhhHHHHhhhHHhhhhhhHHhhCCC
Confidence 679999999999998865 2221111 1269999999999999999999999999998888654
No 187
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.44 E-value=0.14 Score=49.42 Aligned_cols=68 Identities=12% Similarity=0.152 Sum_probs=55.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHh--cCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCC--CeeCCeEEEEE
Q 016936 153 DRVFVGGLPYYFTETQIKELLES--FGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNG--LKMGDKTLTVR 227 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~~~F~~--~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g--~~~~g~~i~v~ 227 (380)
+.|.|+-||..+..++++.+|+. +-.+.+|.+-.+. -.||.|++..+|+.|...|.. ++|.|++|..+
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 46888999999999999999994 7788899886552 389999999999999998753 56777776443
No 188
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=94.38 E-value=0.12 Score=45.24 Aligned_cols=95 Identities=18% Similarity=0.215 Sum_probs=66.4
Q ss_pred hhHHHHHHHHhCCCeeCCeEEEEEEcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhcCccccCCCCCccCCccceEEEE
Q 016936 204 PAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCL 283 (380)
Q Consensus 204 ~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 283 (380)
..-|..|...|++....++.++|.++.. ..+.+
T Consensus 4 rt~ae~ak~eLd~~~~~~~~lr~rfa~~-----------------------------------------------a~l~V 36 (275)
T KOG0115|consen 4 RTLAEIAKRELDGRFPKGRSLRVRFAMH-----------------------------------------------AELYV 36 (275)
T ss_pred ccHHHHHHHhcCCCCCCCCceEEEeecc-----------------------------------------------ceEEE
Confidence 3457778888999999999999999841 22222
Q ss_pred eccCCcccCCChHHHHHHHHHHHHhhcccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccC
Q 016936 284 TEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFG 359 (380)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~L~~~f~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~ 359 (380)
.|.. ..+ ..+.|.+.|+.||.|....+..+... ++.+-.+|+|...-.|.+|+...+-.-|.
T Consensus 37 ~nl~---~~~-------sndll~~~f~~fg~~e~av~~vD~r~----k~t~eg~v~~~~k~~a~~a~rr~~~~g~~ 98 (275)
T KOG0115|consen 37 VNLM---QGA-------SNDLLEQAFRRFGPIERAVAKVDDRG----KPTREGIVEFAKKPNARKAARRCREGGFG 98 (275)
T ss_pred Eecc---hhh-------hhHHHHHhhhhcCccchheeeecccc----cccccchhhhhcchhHHHHHHHhccCccc
Confidence 2211 111 11578899999999999777665532 22344599999999999999988544443
No 189
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.18 E-value=0.66 Score=35.71 Aligned_cols=65 Identities=12% Similarity=0.181 Sum_probs=47.0
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcC-CeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeC
Q 016936 154 RVFVGGLPYYFTETQIKELLESFG-TLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG 220 (380)
Q Consensus 154 ~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 220 (380)
.+.+...|..++.++|..+.+.+- .|..++++++. ..++-.+++.|.+.+.|......+||+.+.
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 344444455555566665555544 47788998873 335556999999999999999999998874
No 190
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.08 E-value=0.19 Score=39.98 Aligned_cols=70 Identities=14% Similarity=0.188 Sum_probs=52.0
Q ss_pred CEEEEcCCCCCC----CHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEE
Q 016936 153 DRVFVGGLPYYF----TETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 228 (380)
Q Consensus 153 ~~l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~ 228 (380)
.+|.|+=|.... +...+..-++.||+|.+|.+.-. ..|.|.|.+..+|-+|+.+++. ...|..+.|.|
T Consensus 87 sTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr-------qsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 87 STIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR-------QSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred eeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC-------ceEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 477776554443 33455566778999999977432 2699999999999999999764 66788888888
Q ss_pred cc
Q 016936 229 AT 230 (380)
Q Consensus 229 ~~ 230 (380)
-.
T Consensus 159 qq 160 (166)
T PF15023_consen 159 QQ 160 (166)
T ss_pred cc
Confidence 53
No 191
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.07 E-value=0.21 Score=44.64 Aligned_cols=73 Identities=18% Similarity=0.195 Sum_probs=57.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeE-EEEEEcc
Q 016936 152 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKT-LTVRRAT 230 (380)
Q Consensus 152 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~-i~v~~~~ 230 (380)
...|.|-++|.. .-.-|..+|++||.|....... +| .+-.|.|.+.-+|++|+.+ +|+.|+|.. |=|..+.
T Consensus 197 D~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~~---ng---NwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTPS---NG---NWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCcc-chhHHHHHHHhhCeeeeeecCC---CC---ceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecC
Confidence 467888898876 5567889999999998776542 23 3889999999999999996 999998765 4566665
Q ss_pred cC
Q 016936 231 AS 232 (380)
Q Consensus 231 ~~ 232 (380)
++
T Consensus 269 Dk 270 (350)
T KOG4285|consen 269 DK 270 (350)
T ss_pred CH
Confidence 44
No 192
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=93.90 E-value=0.099 Score=50.92 Aligned_cols=75 Identities=24% Similarity=0.273 Sum_probs=59.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHh-cCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCee---CCeEEE
Q 016936 150 EGPDRVFVGGLPYYFTETQIKELLES-FGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKM---GDKTLT 225 (380)
Q Consensus 150 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~~i~ 225 (380)
..++.|+|.||-.-+|.-+|+.++.. .|.|... +.|+ -+..|||.|.+.++|.....+|||... +.+.|.
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHH--HHHH----hhcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 34468999999998999999999994 5666665 3343 245799999999999999999999766 567788
Q ss_pred EEEcc
Q 016936 226 VRRAT 230 (380)
Q Consensus 226 v~~~~ 230 (380)
+.|..
T Consensus 516 adf~~ 520 (718)
T KOG2416|consen 516 ADFVR 520 (718)
T ss_pred eeecc
Confidence 87764
No 193
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.75 E-value=0.41 Score=42.92 Aligned_cols=69 Identities=22% Similarity=0.337 Sum_probs=54.3
Q ss_pred cceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHHHcCCceecCce-EE
Q 016936 32 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVA-VR 110 (380)
Q Consensus 32 ~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai~l~~~~i~g~~-i~ 110 (380)
..=|-|=++|+.. -.-|..+|.+||. |++......-.+-+|.|.+..+|.+||..+|+.|.|.. |=
T Consensus 197 D~WVTVfGFppg~-~s~vL~~F~~cG~------------Vvkhv~~~ngNwMhirYssr~~A~KALskng~ii~g~vmiG 263 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ-VSIVLNLFSRCGE------------VVKHVTPSNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIG 263 (350)
T ss_pred cceEEEeccCccc-hhHHHHHHHhhCe------------eeeeecCCCCceEEEEecchhHHHHhhhhcCeeeccceEEe
Confidence 4557777887654 4677889999998 66666665567999999999999999999999999854 44
Q ss_pred Eec
Q 016936 111 VRR 113 (380)
Q Consensus 111 v~~ 113 (380)
|..
T Consensus 264 Vkp 266 (350)
T KOG4285|consen 264 VKP 266 (350)
T ss_pred eee
Confidence 443
No 194
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=92.94 E-value=0.47 Score=40.21 Aligned_cols=62 Identities=19% Similarity=0.263 Sum_probs=45.7
Q ss_pred CHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhC--CCeeCCeEEEEEEcccC
Q 016936 165 TETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALN--GLKMGDKTLTVRRATAS 232 (380)
Q Consensus 165 t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~--g~~~~g~~i~v~~~~~~ 232 (380)
..+.|+++|..|+.+..+..++. - +-..|.|.+.+.|.+|...|+ +..+.|..++|.++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s--F----rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS--F----RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT--T----TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC--C----CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 45789999999999887777654 1 248899999999999999999 89999999999998543
No 195
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=92.70 E-value=0.048 Score=49.56 Aligned_cols=80 Identities=18% Similarity=0.330 Sum_probs=61.9
Q ss_pred CEEEEcCCCCCCCHHHHH---HHHHhcCCeeEEEEeeCCC--CCC-CceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEE
Q 016936 153 DRVFVGGLPYYFTETQIK---ELLESFGTLHGFDLVKDRD--TGN-SKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 226 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~l~~~~~--~~~-~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v 226 (380)
+-+||-+|+.....+.+. ++|.+||.|..+.+.+++. .+. ...-++|.|...++|..||...+|..+.|+.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 468999998887766654 5899999999998887652 111 1113899999999999999999999999988777
Q ss_pred EEcccC
Q 016936 227 RRATAS 232 (380)
Q Consensus 227 ~~~~~~ 232 (380)
.+...+
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 665544
No 196
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=92.41 E-value=0.17 Score=42.67 Aligned_cols=79 Identities=15% Similarity=0.110 Sum_probs=50.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHh-cCCe---eEEEEeeCCC-CC-CCceEEEEEEcChhHHHHHHHHhCCCeeCC-----
Q 016936 153 DRVFVGGLPYYFTETQIKELLES-FGTL---HGFDLVKDRD-TG-NSKGYGFCVYQDPAVTDIACAALNGLKMGD----- 221 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~~~F~~-~G~i---~~v~l~~~~~-~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----- 221 (380)
..|.|++||+.+|++++.+.++. ++.- ..+.-..... .. ..-.-|+|.|.+.+++......++|+.|.+
T Consensus 8 ~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~~ 87 (176)
T PF03467_consen 8 TKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGNE 87 (176)
T ss_dssp -EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-E
T ss_pred ceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCCC
Confidence 58999999999999999997776 6655 2333112211 11 123459999999999999999999977732
Q ss_pred eEEEEEEccc
Q 016936 222 KTLTVRRATA 231 (380)
Q Consensus 222 ~~i~v~~~~~ 231 (380)
.+-.|++|..
T Consensus 88 ~~~~VE~Apy 97 (176)
T PF03467_consen 88 YPAVVEFAPY 97 (176)
T ss_dssp EEEEEEE-SS
T ss_pred cceeEEEcch
Confidence 3456666543
No 197
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=92.40 E-value=0.17 Score=46.00 Aligned_cols=73 Identities=15% Similarity=0.168 Sum_probs=56.4
Q ss_pred cccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEE------ecCCCcEEEEEeCCHHHHHHHH-HcCCc
Q 016936 30 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY------INHEKKFAFVEMRTVEEASNAM-ALDGI 102 (380)
Q Consensus 30 ~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~------~~~~~g~afV~f~~~~~a~~ai-~l~~~ 102 (380)
-..-.+||+||-+-+|.+||.+.+...|.-. +.+++ .+.+||||+|..-+.....+.+ -|..+
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~----------~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k 147 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQSTGLAQ----------FADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTK 147 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhhhHHH----------HhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccc
Confidence 3344589999999999999999999888631 33333 3467999999999999888888 57778
Q ss_pred eecCceEEEe
Q 016936 103 IFEGVAVRVR 112 (380)
Q Consensus 103 ~i~g~~i~v~ 112 (380)
.|+|..-.|.
T Consensus 148 ~iHGQ~P~V~ 157 (498)
T KOG4849|consen 148 TIHGQSPTVL 157 (498)
T ss_pred eecCCCCeee
Confidence 8998654443
No 198
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=92.37 E-value=1.1 Score=32.37 Aligned_cols=41 Identities=15% Similarity=0.202 Sum_probs=35.3
Q ss_pred HHHHHhhcccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHc
Q 016936 303 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALS 354 (380)
Q Consensus 303 ~~L~~~f~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~ 354 (380)
.||.++|+.||.|.-.-|.. ..|||...+.+.|..|+..+.
T Consensus 23 ~DI~qlFspfG~I~VsWi~d-----------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 23 SDIYQLFSPFGQIYVSWIND-----------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp HHHHHHCCCCCCEEEEEECT-----------TEEEEEECCCHHHHHHHHHHT
T ss_pred hhHHHHhccCCcEEEEEEcC-----------CcEEEEeecHHHHHHHHHHhc
Confidence 59999999999998777733 277999999999999998875
No 199
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=91.97 E-value=0.075 Score=44.83 Aligned_cols=69 Identities=16% Similarity=0.229 Sum_probs=42.2
Q ss_pred hcccceEEEcCCCCcCcHHHHHHHHHH-HHHhccCCCCCCCCeeEEEE--ecC------CCcEEEEEeCCHHHHHHHH-H
Q 016936 29 TRHARRVYVGGLPPLANEQAIATFFSQ-VMTAIGGNSAGPGDAVVNVY--INH------EKKFAFVEMRTVEEASNAM-A 98 (380)
Q Consensus 29 ~~~~~~v~V~nLp~~~t~~~l~~~f~~-~G~i~~~~~~~~~~~i~~~~--~~~------~~g~afV~f~~~~~a~~ai-~ 98 (380)
.....+|.|++||+.+|++++.+.++. ++.... -..+. ... .-.-|||.|.+.+++.... .
T Consensus 4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~---------w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~ 74 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWD---------WYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDR 74 (176)
T ss_dssp -----EEEEEEE-TTS-HHHHCCCCSS--SSE------------EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHH
T ss_pred cccCceEEEeCCCCCCCHHHHHHHhhhhcccccc---------eEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHh
Confidence 345669999999999999999886665 322100 12222 111 1246999999999999988 7
Q ss_pred cCCceecC
Q 016936 99 LDGIIFEG 106 (380)
Q Consensus 99 l~~~~i~g 106 (380)
++|..+.+
T Consensus 75 ~~g~~F~D 82 (176)
T PF03467_consen 75 FDGHVFVD 82 (176)
T ss_dssp CTTEEEE-
T ss_pred cCCcEEEC
Confidence 99988755
No 200
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=91.38 E-value=0.38 Score=33.21 Aligned_cols=51 Identities=22% Similarity=0.297 Sum_probs=40.7
Q ss_pred HHHHHhhcccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCCeEEEE
Q 016936 303 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNA 365 (380)
Q Consensus 303 ~~L~~~f~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v 365 (380)
+|++..+.+|+... | ....+ |+ ||.|.+..+|+++....+|+.+.+.++..
T Consensus 15 ~d~K~~Lr~y~~~~-I---~~d~t-------Gf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 15 EDFKKRLRKYRWDR-I---RDDRT-------GF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred HHHHHHHhcCCcce-E---EecCC-------EE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 68999999998765 2 22223 44 99999999999999999999988877654
No 201
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=90.84 E-value=1.5 Score=31.03 Aligned_cols=59 Identities=24% Similarity=0.318 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHHHhcCCe-----eEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEc
Q 016936 162 YYFTETQIKELLESFGTL-----HGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 229 (380)
Q Consensus 162 ~~~t~~~l~~~F~~~G~i-----~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~ 229 (380)
..++..+|..++...+.| -.+++... |+||+.... .|..++..|++..+.|+++.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 457889999999976554 46777543 899988766 699999999999999999999864
No 202
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=90.81 E-value=1.3 Score=42.08 Aligned_cols=68 Identities=18% Similarity=0.292 Sum_probs=58.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcC-CeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCC
Q 016936 152 PDRVFVGGLPYYFTETQIKELLESFG-TLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD 221 (380)
Q Consensus 152 ~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 221 (380)
.+.|+|-.+|...+..||..+...+- .|..++++++.. -++-..+|.|.+.++|......+||+.|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 57999999999999999999999765 488999999732 234458999999999999999999998843
No 203
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=90.62 E-value=1.1 Score=35.68 Aligned_cols=71 Identities=14% Similarity=0.133 Sum_probs=51.2
Q ss_pred hcccceEEEcCCCCcC----cHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCce
Q 016936 29 TRHARRVYVGGLPPLA----NEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGII 103 (380)
Q Consensus 29 ~~~~~~v~V~nLp~~~----t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~ 103 (380)
+.+..||.|+=|...+ +-+.+-..++.||+ |.++.. -++..|.|.|.+..+|=+|+ +++. .
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGp------------I~SVT~-cGrqsavVvF~d~~SAC~Av~Af~s-~ 148 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGP------------IQSVTL-CGRQSAVVVFKDITSACKAVSAFQS-R 148 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCC------------cceeee-cCCceEEEEehhhHHHHHHHHhhcC-C
Confidence 5677889998777666 33445556666766 566554 37788999999999999999 5554 5
Q ss_pred ecCceEEEec
Q 016936 104 FEGVAVRVRR 113 (380)
Q Consensus 104 i~g~~i~v~~ 113 (380)
.-|..++..|
T Consensus 149 ~pgtm~qCsW 158 (166)
T PF15023_consen 149 APGTMFQCSW 158 (166)
T ss_pred CCCceEEeec
Confidence 5667777766
No 204
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=90.12 E-value=6.8 Score=35.33 Aligned_cols=184 Identities=9% Similarity=0.079 Sum_probs=104.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-------CCCCCceEEEEEEcChhHHHHHHH----HhC--
Q 016936 149 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDR-------DTGNSKGYGFCVYQDPAVTDIACA----ALN-- 215 (380)
Q Consensus 149 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~-------~~~~~~g~afV~f~~~~~A~~Ai~----~l~-- 215 (380)
....|.|...|+...++...+...|-+||+|++|.++.+. +........++.|-+.+.+-.... .|.
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf 91 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF 91 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH
Confidence 4455789999999999999999999999999999998764 112334568889998887644332 222
Q ss_pred CCeeCCeEEEEEEcccCCCCChh-HHHHHHHHHHHHHHHHHHHhhhcCccccCCCCCccCCccceEEEEeccCCcccCCC
Q 016936 216 GLKMGDKTLTVRRATASSGQSKT-EQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALAD 294 (380)
Q Consensus 216 g~~~~g~~i~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 294 (380)
...+....+.+.+..-+...... ..+.... +......+. ........++++.+.-..... .
T Consensus 92 K~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~---~~~~~~~L~------------~~i~~~gATRSl~IeF~~~~~---~ 153 (309)
T PF10567_consen 92 KTKLKSESLTLSFVSLNYQKKTDPNDEEADF---SDYLVASLQ------------YNIINRGATRSLAIEFKDPVD---K 153 (309)
T ss_pred HHhcCCcceeEEEEEEeccccccccccccch---hhHHhhhhh------------heeecCCcceEEEEEecCccc---h
Confidence 24667788888876643222111 0000000 000000000 011124556666554321111 1
Q ss_pred hHHHHHHHHHHHHhhccc---CCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHc
Q 016936 295 DEEYEEILEDMREECGKY---GTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALS 354 (380)
Q Consensus 295 ~~~~~~~~~~L~~~f~~~---G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~ 354 (380)
+. .+...|.-+...- -.+++|.++...+... .=|..+|.+.|-+...|...++-|.
T Consensus 154 ~d---l~~~kL~fL~~~~n~RYVlEsIDlVna~~~~~-~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 154 DD---LIEKKLPFLKNSNNKRYVLESIDLVNADEPSK-HFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred hH---HHHHhhhhhccCCCceEEEEEEEEeccCcccc-cCCcceEEEeehhHHhHHHHHHHHH
Confidence 11 1223342222221 3577777776433211 1123478999999999999998776
No 205
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=89.83 E-value=0.47 Score=34.78 Aligned_cols=70 Identities=20% Similarity=0.236 Sum_probs=44.1
Q ss_pred EEEEeCCHHHHHHHHHc--CCceecCceEEEe--cCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEc
Q 016936 83 AFVEMRTVEEASNAMAL--DGIIFEGVAVRVR--RPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVG 158 (380)
Q Consensus 83 afV~f~~~~~a~~ai~l--~~~~i~g~~i~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~ 158 (380)
|+|.|.+..-|++.+.+ +...+.+..+.|. +..........- ...-++++|.|.
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv----------------------~~~vs~rtVlvs 58 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQV----------------------FSGVSKRTVLVS 58 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEE----------------------EEcccCCEEEEe
Confidence 68999999999998853 3344666554443 322211110000 002334799999
Q ss_pred CCCCCCCHHHHHHHHH
Q 016936 159 GLPYYFTETQIKELLE 174 (380)
Q Consensus 159 nlp~~~t~~~l~~~F~ 174 (380)
|||...++++|++..+
T Consensus 59 gip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 59 GIPDVLDEEELRDKLE 74 (88)
T ss_pred CCCCCCChhhheeeEE
Confidence 9999999999877654
No 206
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=87.95 E-value=0.43 Score=47.33 Aligned_cols=71 Identities=17% Similarity=0.160 Sum_probs=57.4
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceec
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFE 105 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~ 105 (380)
++-.+.-+|||+|+...+..+-++.....+|. |.++.. --|+|..|.....+..|+ .++...+.
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~------------v~s~kr---~~fgf~~f~~~~~~~ra~r~~t~~~~~ 99 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGF------------VPSWKR---DKFGFCEFLKHIGDLRASRLLTELNID 99 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCc------------chhhhh---hhhcccchhhHHHHHHHHHHhcccCCC
Confidence 45567789999999999999999999999987 344332 229999999999999999 67778888
Q ss_pred CceEEEe
Q 016936 106 GVAVRVR 112 (380)
Q Consensus 106 g~~i~v~ 112 (380)
|.++.+.
T Consensus 100 ~~kl~~~ 106 (668)
T KOG2253|consen 100 DQKLIEN 106 (668)
T ss_pred cchhhcc
Confidence 8776664
No 207
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=87.15 E-value=1.8 Score=30.69 Aligned_cols=53 Identities=19% Similarity=0.129 Sum_probs=31.1
Q ss_pred HHHHhhcccC-----CeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCCeEEEEEec
Q 016936 304 DMREECGKYG-----TLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYY 368 (380)
Q Consensus 304 ~L~~~f~~~G-----~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~ 368 (380)
+|..++..-+ .|-.|.+... ++||+-. .+.|..+++.|++..+.|++|+|+.|
T Consensus 17 ~iv~~i~~~~gi~~~~IG~I~I~~~-----------~S~vev~-~~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 17 DIVGAICNEAGIPGRDIGRIDIFDN-----------FSFVEVP-EEVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp HHHHHHHTCTTB-GGGEEEEEE-SS------------EEEEE--TT-HHHHHHHHTT--SSS----EEE-
T ss_pred HHHHHHHhccCCCHHhEEEEEEeee-----------EEEEEEC-HHHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 5555555443 4667777542 6688866 56899999999999999999999864
No 208
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=85.53 E-value=3.2 Score=28.66 Aligned_cols=54 Identities=11% Similarity=0.140 Sum_probs=41.2
Q ss_pred cCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceecCceEEE
Q 016936 43 LANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRV 111 (380)
Q Consensus 43 ~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~g~~i~v 111 (380)
.++-+|++..++.|+- ..+. .++-=-||.|.+.++|++|. .-+++.+.+..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-------------~~I~--~d~tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-------------DRIR--DDRTGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-------------ceEE--ecCCEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 5788999999999963 3332 23333589999999999999 78888888877655
No 209
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=84.94 E-value=6.9 Score=30.13 Aligned_cols=62 Identities=11% Similarity=0.176 Sum_probs=44.6
Q ss_pred HHHHhhccc-CCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCC---eEEEEEeccc
Q 016936 304 DMREECGKY-GTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGG---NTVNAFYYPE 370 (380)
Q Consensus 304 ~L~~~f~~~-G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~g---r~l~v~~~~~ 370 (380)
+|..+.+.+ ..|..+++.++....+ =.+.++|.+.++|..=....||+.|.. ...+|-|...
T Consensus 29 ~l~~f~~~~~~~i~~~riird~~pnr-----ymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~ChvvfV~~ 94 (110)
T PF07576_consen 29 FLLFFGAPFREDIEHIRIIRDGTPNR-----YMVLIKFRDQESADEFYEEFNGKPFNSLEPETCHVVFVKS 94 (110)
T ss_pred HHHHhhhcccccEEEEEEeeCCCCce-----EEEEEEECCHHHHHHHHHHhCCCccCCCCCceeEEEEEEE
Confidence 565555555 4677888888654332 247999999999999999999998754 5566655544
No 210
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=84.27 E-value=0.78 Score=46.85 Aligned_cols=74 Identities=14% Similarity=0.174 Sum_probs=59.3
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCee--CCeEEEEEEccc
Q 016936 154 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKM--GDKTLTVRRATA 231 (380)
Q Consensus 154 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~i~v~~~~~ 231 (380)
+.++.|.+-..+---|..+|++||.+.+...+++-+ .|.|.|.+.+.|..|.++++|+++ -|-+.+|.+++.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 344555555666678899999999999988877743 799999999999999999999866 677788888766
Q ss_pred CC
Q 016936 232 SS 233 (380)
Q Consensus 232 ~~ 233 (380)
-.
T Consensus 374 ~~ 375 (1007)
T KOG4574|consen 374 LP 375 (1007)
T ss_pred cc
Confidence 44
No 211
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=83.28 E-value=1.3 Score=45.43 Aligned_cols=70 Identities=23% Similarity=0.252 Sum_probs=58.1
Q ss_pred eEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCcee--cCceEE
Q 016936 34 RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIF--EGVAVR 110 (380)
Q Consensus 34 ~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i--~g~~i~ 110 (380)
+.++.|.+-..+...|..+|++||. +.+..+.++...|.|+|.+.+.|..|+ +++|+.+ -|.+.+
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~------------v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~ 367 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGS------------VASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSR 367 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcc------------hhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCcee
Confidence 3455577778899999999999998 677777778889999999999999999 8999774 567788
Q ss_pred EecCC
Q 016936 111 VRRPT 115 (380)
Q Consensus 111 v~~~~ 115 (380)
|..++
T Consensus 368 V~~ak 372 (1007)
T KOG4574|consen 368 VSFAK 372 (1007)
T ss_pred EEecc
Confidence 87654
No 212
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=79.00 E-value=5.2 Score=39.19 Aligned_cols=72 Identities=13% Similarity=0.173 Sum_probs=50.2
Q ss_pred CccceEEEEeccCCcccCCChHHHHHHHHHHHHhhcc--cCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHH
Q 016936 275 ETLAKVLCLTEAITADALADDEEYEEILEDMREECGK--YGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNA 352 (380)
Q Consensus 275 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~f~~--~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~ 352 (380)
.....+++|..+.....+ ++++.+|.. +-.+.+|...-+. ++ ||.|.+..||++|...
T Consensus 172 ~~kRcIvilREIpettp~----------e~Vk~lf~~encPk~iscefa~N~---------nW-yITfesd~DAQqAyky 231 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPI----------EVVKALFKGENCPKVISCEFAHND---------NW-YITFESDTDAQQAYKY 231 (684)
T ss_pred CcceeEEEEeecCCCChH----------HHHHHHhccCCCCCceeeeeeecC---------ce-EEEeecchhHHHHHHH
Confidence 444445566665444332 689999975 7889999986643 13 9999999999999998
Q ss_pred HcCc--ccCCeEEEEE
Q 016936 353 LSGR--KFGGNTVNAF 366 (380)
Q Consensus 353 l~g~--~i~gr~l~v~ 366 (380)
|... .|-|+.|-..
T Consensus 232 lreevk~fqgKpImAR 247 (684)
T KOG2591|consen 232 LREEVKTFQGKPIMAR 247 (684)
T ss_pred HHHHHHhhcCcchhhh
Confidence 8654 3666665443
No 213
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=76.66 E-value=0.63 Score=41.13 Aligned_cols=56 Identities=30% Similarity=0.524 Sum_probs=43.4
Q ss_pred HHHHHhhcccCCeEEEEecCCCC---------CCCCCCCccE-------EEEEeechhhHHHHHHHHcCccc
Q 016936 303 EDMREECGKYGTLVNVVIPRPDQ---------NGGETPGVGK-------VFLEYYDAVGCATAKNALSGRKF 358 (380)
Q Consensus 303 ~~L~~~f~~~G~I~~v~i~~~~~---------~~~~~~g~g~-------afV~f~~~~~A~~A~~~l~g~~i 358 (380)
+.|+..|..||.|..|.|+--.+ +|...+|+|+ |||.|-....-..|+.+|.|+.+
T Consensus 176 ~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 176 DRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHHHHHHhHHHHHHHHhcchH
Confidence 58999999999999998865332 3334566665 67888888888899999998865
No 214
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=69.86 E-value=22 Score=34.17 Aligned_cols=64 Identities=11% Similarity=0.328 Sum_probs=52.8
Q ss_pred cceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecC----CCcEEEEEeCCHHHHHHHH-HcCCceecC
Q 016936 32 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH----EKKFAFVEMRTVEEASNAM-ALDGIIFEG 106 (380)
Q Consensus 32 ~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~----~~g~afV~f~~~~~a~~ai-~l~~~~i~g 106 (380)
+..|+|-.+|..++..||..|...+-.. |.++++.+ ++.-.++.|.+-++|..+. .+||..|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~-----------I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQ-----------ISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhh-----------hheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 8899999999999999999999977553 55555433 3456999999999999999 899988754
No 215
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=68.03 E-value=5.5 Score=35.56 Aligned_cols=48 Identities=4% Similarity=0.013 Sum_probs=40.0
Q ss_pred ceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHH
Q 016936 33 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVE 91 (380)
Q Consensus 33 ~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~ 91 (380)
.-|+++|||.++--.||+..++.-+-. -.++.+.-..|-||+-|.+..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~-----------pm~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECT-----------PMSISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCC-----------ceeEeeecCCcceeEecCCcc
Confidence 349999999999999999999988652 456777778899999998754
No 216
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.05 E-value=53 Score=32.73 Aligned_cols=137 Identities=11% Similarity=0.131 Sum_probs=84.6
Q ss_pred hhhcccceEEEcCCCCc-CcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHHHcCCceec
Q 016936 27 QATRHARRVYVGGLPPL-ANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFE 105 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~-~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai~l~~~~i~ 105 (380)
......++|-|.||.++ +.-.||.-+|+.|-+. +..|++|.+.++. |-.. .|..-.+.
T Consensus 169 ~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~--------gGsilSV~IYpSe------FGke-------RM~eEeV~ 227 (650)
T KOG2318|consen 169 VLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPK--------GGSILSVKIYPSE------FGKE-------RMKEEEVH 227 (650)
T ss_pred ccccccceeeEeccccccccHHHHHHHHHhhcCC--------CCceeEEEechhh------hhHH-------Hhhhhccc
Confidence 34667899999999998 7899999999999663 3358899887763 2211 23333455
Q ss_pred CceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEe
Q 016936 106 GVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLV 185 (380)
Q Consensus 106 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~ 185 (380)
|.++.+-.+....... . .....-++..+.-+++|+.= .++.
T Consensus 228 GP~~el~~~~e~~~~s--------------------------------~-----sD~ee~~~~~~~kLR~Yq~~-rLkY- 268 (650)
T KOG2318|consen 228 GPPKELFKPVEEYKES--------------------------------E-----SDDEEEEDVDREKLRQYQLN-RLKY- 268 (650)
T ss_pred CChhhhccccccCccc--------------------------------c-----cchhhhhhHHHHHHHHHHhh-hhee-
Confidence 6655554322211110 0 01111122345555655521 1111
Q ss_pred eCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCC--eEEEEEEcccC
Q 016936 186 KDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD--KTLTVRRATAS 232 (380)
Q Consensus 186 ~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g--~~i~v~~~~~~ 232 (380)
=||.|+|.+.+.|.+....|+|.+|.. ..+-+++....
T Consensus 269 ---------YyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPDd 308 (650)
T KOG2318|consen 269 ---------YYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPDD 308 (650)
T ss_pred ---------EEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCCC
Confidence 179999999999999999999999864 55666665443
No 217
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=65.69 E-value=3.6 Score=41.07 Aligned_cols=68 Identities=26% Similarity=0.432 Sum_probs=58.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEE
Q 016936 152 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 228 (380)
Q Consensus 152 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~ 228 (380)
..++||+|+...+..+-++.+...+|.|-.+.... |||..|..+.-+.+|+..+.-..++|..+.+..
T Consensus 40 ~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 40 RDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 35899999999999999999999999997764432 899999999999999999888888888776665
No 218
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=65.30 E-value=9 Score=32.00 Aligned_cols=59 Identities=12% Similarity=0.219 Sum_probs=46.2
Q ss_pred HHHHHhhcccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCCe-EEEEEeccc
Q 016936 303 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGN-TVNAFYYPE 370 (380)
Q Consensus 303 ~~L~~~f~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr-~l~v~~~~~ 370 (380)
.+..++|.+|-...-..+++ +++..-|-|.+++.|..|...+|++.|.|+ .+...|+..
T Consensus 30 ~~~~~lFrq~n~~~~fq~lr---------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 30 ALFENLFRQINEDATFQLLR---------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQP 89 (193)
T ss_pred HHHHhHHhhhCcchHHHHHH---------hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccC
Confidence 45567777777666655554 345778999999999999999999999999 777777765
No 219
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=64.53 E-value=26 Score=31.50 Aligned_cols=48 Identities=10% Similarity=0.043 Sum_probs=36.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCe-eEEEEeeCCCCCCCceEEEEEEcChhH
Q 016936 153 DRVFVGGLPYYFTETQIKELLESFGTL-HGFDLVKDRDTGNSKGYGFCVYQDPAV 206 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~l~~~~~~~~~~g~afV~f~~~~~ 206 (380)
.-|+++|||.++.-.||+..+++.+-+ .++.| ..+.|-||+.|.+...
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~~~ 379 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNRKG 379 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCccC
Confidence 469999999999999999999987753 34444 2245679999976543
No 220
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=63.62 E-value=1.2e+02 Score=27.68 Aligned_cols=169 Identities=9% Similarity=0.080 Sum_probs=98.2
Q ss_pred hhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCC-------------cEEEEEeCCHHHHH
Q 016936 28 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEK-------------KFAFVEMRTVEEAS 94 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~-------------g~afV~f~~~~~a~ 94 (380)
.+=..|.|...|+..+++-..+...|.+||+ |.++.+..+. ....+.|-+.+.+.
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~p------------IESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CL 78 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGP------------IESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICL 78 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCc------------eeEEEEecCCCcccccccccccceEEEEeeechHHHH
Confidence 3445678999999999999999999999988 6666654433 78999999999987
Q ss_pred HHH-H-cCC-----ceecCceEEEecCCC-CCccccccCCCCCCCCCcccc--cccCCCC-CCCCCCCCCEEEEcCCCCC
Q 016936 95 NAM-A-LDG-----IIFEGVAVRVRRPTD-YNPTLAAALGPGQPSPNLNLA--AVGLASG-AIGGAEGPDRVFVGGLPYY 163 (380)
Q Consensus 95 ~ai-~-l~~-----~~i~g~~i~v~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~l~V~nlp~~ 163 (380)
-.. . |+. ..++-..+.+....- |...... +.+..+. ....... ........|.|.|.-- ..
T Consensus 79 dFYNnvLQrLsEfK~~L~S~~L~lsFV~l~y~~~~~~-------~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~ 150 (309)
T PF10567_consen 79 DFYNNVLQRLSEFKTKLKSESLTLSFVSLNYQKKTDP-------NDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DP 150 (309)
T ss_pred HHHHHHHHHHHHHHHhcCCcceeEEEEEEeccccccc-------cccccchhhHHhhhhhheeecCCcceEEEEEec-Cc
Confidence 776 3 222 224455565554321 1111100 0000000 0000000 1112334467777654 33
Q ss_pred CCHHHH-HH---HHHhcCC----eeEEEEeeC--CCCCCCceEEEEEEcChhHHHHHHHHhCC
Q 016936 164 FTETQI-KE---LLESFGT----LHGFDLVKD--RDTGNSKGYGFCVYQDPAVTDIACAALNG 216 (380)
Q Consensus 164 ~t~~~l-~~---~F~~~G~----i~~v~l~~~--~~~~~~~g~afV~f~~~~~A~~Ai~~l~g 216 (380)
+..+++ .+ ++..=+. ++++.++.- +...-++.||++.|-+...|...++.+..
T Consensus 151 ~~~~dl~~~kL~fL~~~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~ 213 (309)
T PF10567_consen 151 VDKDDLIEKKLPFLKNSNNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKS 213 (309)
T ss_pred cchhHHHHHhhhhhccCCCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHh
Confidence 434333 22 3333332 567777653 22234667999999999999999998763
No 221
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=59.93 E-value=14 Score=28.83 Aligned_cols=50 Identities=10% Similarity=0.220 Sum_probs=28.5
Q ss_pred EEEEcCCCCCC---------CHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhH
Q 016936 154 RVFVGGLPYYF---------TETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAV 206 (380)
Q Consensus 154 ~l~V~nlp~~~---------t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~ 206 (380)
.+.|.|+|... +.++|.+.|+.|.++. ++.+.++ ..+.|+++|.|.+.-.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWS 68 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChH
Confidence 67777775543 4578999999999985 4444553 4578899999976544
No 222
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=57.36 E-value=7.4 Score=31.59 Aligned_cols=110 Identities=15% Similarity=0.101 Sum_probs=71.0
Q ss_pred cCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHHHcCCceecCceEEEecCCCCCcccc
Q 016936 43 LANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLA 122 (380)
Q Consensus 43 ~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai~l~~~~i~g~~i~v~~~~~~~~~~~ 122 (380)
..+-..|...+.+.=...+ .+.-.. -+.++..+.|.+.+++.+++......+.+..+.+..=......
T Consensus 28 ~~~~~~l~~~l~~~W~~~~--------~~~i~~--l~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~~~~-- 95 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKG--------GVKIRD--LGDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPDFNP-- 95 (153)
T ss_pred CCCHHHHHHHHHHHhCCCC--------cEEEEE--eCCCeEEEEEEeccceeEEEecccccccccchhhhhhcccccc--
Confidence 4667777777776411111 022222 2568899999999999999987777888887777532211000
Q ss_pred ccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCC-CCHHHHHHHHHhcCCeeEEEEe
Q 016936 123 AALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYY-FTETQIKELLESFGTLHGFDLV 185 (380)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~l~ 185 (380)
.... .....--|-|.|||.. ++++-+..+-+.+|.+..++..
T Consensus 96 -----~~~~----------------~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~ 138 (153)
T PF14111_consen 96 -----SEVK----------------FEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDEN 138 (153)
T ss_pred -----cccc----------------eeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcC
Confidence 0000 0011135778999977 7778899999999999888664
No 223
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=54.43 E-value=11 Score=31.43 Aligned_cols=73 Identities=11% Similarity=0.137 Sum_probs=50.7
Q ss_pred cceEEEcCCCCcC-c----HHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceec
Q 016936 32 ARRVYVGGLPPLA-N----EQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFE 105 (380)
Q Consensus 32 ~~~v~V~nLp~~~-t----~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~ 105 (380)
..++.+.+++..+ + .....++|.+|-. ..-..+.++.+...|.|.+++.|..|. .++...+.
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~------------~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~ 77 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINE------------DATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFN 77 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCc------------chHHHHHHhhceeEEeccChhHHHHHHHHhhhcccC
Confidence 3557777777664 2 2233455554421 333445678889999999999999999 89999999
Q ss_pred Cc-eEEEecCCC
Q 016936 106 GV-AVRVRRPTD 116 (380)
Q Consensus 106 g~-~i~v~~~~~ 116 (380)
|+ .++...+-.
T Consensus 78 ~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 78 GKNELKLYFAQP 89 (193)
T ss_pred CCceEEEEEccC
Confidence 87 677765443
No 224
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=49.33 E-value=44 Score=22.69 Aligned_cols=26 Identities=15% Similarity=0.310 Sum_probs=20.7
Q ss_pred HHHHHHHHhhcccCCeEEEEecCCCC
Q 016936 300 EILEDMREECGKYGTLVNVVIPRPDQ 325 (380)
Q Consensus 300 ~~~~~L~~~f~~~G~I~~v~i~~~~~ 325 (380)
.+..+||++|+..|.|.-+.+.....
T Consensus 6 ~i~~~iR~~fs~lG~I~vLYvn~~eS 31 (62)
T PF15513_consen 6 EITAEIRQFFSQLGEIAVLYVNPYES 31 (62)
T ss_pred HHHHHHHHHHHhcCcEEEEEEccccc
Confidence 35579999999999999888765543
No 225
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=48.39 E-value=53 Score=22.83 Aligned_cols=61 Identities=26% Similarity=0.234 Sum_probs=43.3
Q ss_pred HHHHHHHHhcCC-eeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcc
Q 016936 167 TQIKELLESFGT-LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 230 (380)
Q Consensus 167 ~~l~~~F~~~G~-i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~ 230 (380)
.+|.+.|...|. +..+.-+..+++..+...-+|......+-.. -++=+.++|+++.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 468889999996 7777777776666666677777766543333 244577899999998754
No 226
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.15 E-value=47 Score=31.46 Aligned_cols=55 Identities=15% Similarity=0.234 Sum_probs=46.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCe-eEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHH
Q 016936 152 PDRVFVGGLPYYFTETQIKELLESFGTL-HGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 213 (380)
Q Consensus 152 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~ 213 (380)
..-|-|-++|.....+||...|+.|+.- -.|.|+.|. .||-.|.+...|..|+-.
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 3568899999999999999999999874 467787763 699999999999999874
No 227
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=45.18 E-value=14 Score=30.84 Aligned_cols=85 Identities=16% Similarity=0.048 Sum_probs=56.5
Q ss_pred CCCCCCCCccccchh--hhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEe---c----CCCcEE
Q 016936 13 LGAFPLMPVQVMTQQ--ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI---N----HEKKFA 83 (380)
Q Consensus 13 ~~~~~~~~~~~~~~~--~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~---~----~~~g~a 83 (380)
..-.|..|+|..+.. .....|++|.+ |.+..-++|..|-+ |. +..+.. . ..+|..
T Consensus 90 ~rr~~skplpEvt~e~~~~~~~r~v~~K--~td~ql~~l~qw~~--~k------------~~nv~mr~~~~k~~~fkGsv 153 (205)
T KOG4213|consen 90 IRRSPSKPLPEVTDEYKEGIKERTVYKK--ITDDQLDDLNQWAS--GK------------GHNVKMRRHGNKAHPFKGSV 153 (205)
T ss_pred hhcCcCCCCccccHHHHHHHHHhhhhcc--CCHHHHHHHHHHhc--cc------------ceEeeccccCCCCCCCCCce
Confidence 344677888777653 45667888888 55556666666666 33 333332 2 346899
Q ss_pred EEEeCCHHHHHHHHHcCCceecCceEEEec
Q 016936 84 FVEMRTVEEASNAMALDGIIFEGVAVRVRR 113 (380)
Q Consensus 84 fV~f~~~~~a~~ai~l~~~~i~g~~i~v~~ 113 (380)
||.|.+.+.|..++.-+........+...+
T Consensus 154 kv~f~tk~qa~a~~~~~e~~~~e~el~r~~ 183 (205)
T KOG4213|consen 154 KVTFQTKEQAFANDDTHEEKGAETELKRSG 183 (205)
T ss_pred EEEeecHHHHHhhhhhhhhhccchHHHHHH
Confidence 999999999999886666555555555544
No 228
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.34 E-value=79 Score=30.00 Aligned_cols=59 Identities=12% Similarity=0.175 Sum_probs=47.6
Q ss_pred hcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHHHc
Q 016936 29 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMAL 99 (380)
Q Consensus 29 ~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai~l 99 (380)
..-.+.|-|-++|....-+||...|..|+.- =-++++. +.-.||-.|.+...|..||.+
T Consensus 388 ~dlpHVlEIydfp~efkteDll~~f~~yq~k-----------gfdIkWv-DdthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 388 SDLPHVLEIYDFPDEFKTEDLLKAFETYQNK-----------GFDIKWV-DDTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccccceeEeccCchhhccHHHHHHHHHhhcC-----------CceeEEe-ecceeEEeecchHHHHHHhhc
Confidence 3477889999999999999999999999761 2234443 445799999999999999965
No 229
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=38.26 E-value=1.1e+02 Score=21.26 Aligned_cols=62 Identities=16% Similarity=0.179 Sum_probs=43.5
Q ss_pred HHHHHHHHhcCC-eeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEccc
Q 016936 167 TQIKELLESFGT-LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 231 (380)
Q Consensus 167 ~~l~~~F~~~G~-i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~ 231 (380)
++|.+.|...|. |..+.-+..+.++.....-||++....+...+ ++=+.+++..+.|++...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCC
Confidence 578888898885 66776666654566667788888777663333 445778899999987643
No 230
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=34.83 E-value=37 Score=31.92 Aligned_cols=64 Identities=22% Similarity=0.350 Sum_probs=45.3
Q ss_pred cccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec--------CCCcEEEEEeCCHHHHHHHH-HcC
Q 016936 30 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN--------HEKKFAFVEMRTVEEASNAM-ALD 100 (380)
Q Consensus 30 ~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~--------~~~g~afV~f~~~~~a~~ai-~l~ 100 (380)
...+.|.|.+||+..+++++.+....+-.- +.-..+. .-.+.|||.|...++..... ..+
T Consensus 5 ~~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~-----------v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~ 73 (376)
T KOG1295|consen 5 EAKVKVVVRRLPPKLTEEQLLEQINPFPEH-----------VNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFD 73 (376)
T ss_pred ccceeeeeecCCCcccHHHHhhhcCCCccc-----------cchheeccccccchhhhhhhhhhccccHHHHHHHHhhCC
Confidence 345789999999999999999888875221 1111111 11368999999999988877 577
Q ss_pred Ccee
Q 016936 101 GIIF 104 (380)
Q Consensus 101 ~~~i 104 (380)
|..+
T Consensus 74 g~if 77 (376)
T KOG1295|consen 74 GYIF 77 (376)
T ss_pred ceEE
Confidence 7554
No 231
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=33.71 E-value=46 Score=29.80 Aligned_cols=41 Identities=24% Similarity=0.575 Sum_probs=31.4
Q ss_pred CCCCCCCCEEEEcCCCCC------------CCHHHHHHHHHhcCCeeEEEEee
Q 016936 146 IGGAEGPDRVFVGGLPYY------------FTETQIKELLESFGTLHGFDLVK 186 (380)
Q Consensus 146 ~~~~~~~~~l~V~nlp~~------------~t~~~l~~~F~~~G~i~~v~l~~ 186 (380)
..+...+.+|++.+||-. .+++.|+..|+.||.|..|.++.
T Consensus 143 mkpgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 143 MKPGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred cCCCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 344566678999888843 35678999999999999888753
No 232
>PF15519 RBM39linker: linker between RRM2 and RRM3 domains in RBM39 protein; PDB: 3S6E_A 2LQ5_A.
Probab=33.32 E-value=28 Score=24.57 Aligned_cols=21 Identities=5% Similarity=0.115 Sum_probs=13.7
Q ss_pred CccceEEEEeccCCcccCCCh
Q 016936 275 ETLAKVLCLTEAITADALADD 295 (380)
Q Consensus 275 ~~~~~~~~l~~~~~~~~~~~~ 295 (380)
...++|+.|+|+|++.+..+.
T Consensus 51 ~~aS~C~lLkNMFDP~~Ete~ 71 (73)
T PF15519_consen 51 PIASRCFLLKNMFDPAEETEP 71 (73)
T ss_dssp S---SEEEEESSS-TTCGGST
T ss_pred CCCCceeeeecCCCcccccCC
Confidence 478999999999999875443
No 233
>PF08259 Periviscerokin: Periviscerokinin family; InterPro: IPR013231 Perviscerokinin neuropeptides are found in the abdominal perisympathetic organs of insects. They mediate visceral muscle contractile activity (myotropic activity). CAPA, which are in the periviscerokinin and pyrokinin peptide families, has potential medical importance. This is due to its myotropic effects on, for example, heart muscles and due to its occurrence in the Ixodoidea (ticks), which are important vectors in the transmission of many animal diseases []. These peptides also have a strong diuretic or anti-diuretic effect, suggesting they have significant medical implications [].
Probab=31.61 E-value=23 Score=15.01 Aligned_cols=7 Identities=29% Similarity=0.913 Sum_probs=4.4
Q ss_pred CCCCCCC
Q 016936 3 QNMLPFG 9 (380)
Q Consensus 3 ~~~~~~~ 9 (380)
+||.|||
T Consensus 3 sGlI~fp 9 (11)
T PF08259_consen 3 SGLIPFP 9 (11)
T ss_pred ccccccC
Confidence 5666665
No 234
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=29.78 E-value=37 Score=24.92 Aligned_cols=26 Identities=23% Similarity=0.442 Sum_probs=21.8
Q ss_pred hhcccceEEEcCCCCcCcHHHHHHHH
Q 016936 28 ATRHARRVYVGGLPPLANEQAIATFF 53 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~~~t~~~l~~~f 53 (380)
.....|+|-|.|||..+++++|++.+
T Consensus 48 ~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 48 SGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred EcccCCEEEEeCCCCCCChhhheeeE
Confidence 45778999999999999999987643
No 235
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.70 E-value=10 Score=36.19 Aligned_cols=77 Identities=5% Similarity=-0.239 Sum_probs=58.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcc
Q 016936 153 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 230 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~ 230 (380)
.+.++..+|..+++.++.=.|..||.|..+.+.+--+.+...-.+||.-.+.. |..++..+....+.|..+++..+.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~~~-~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKKAN-GPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeeccC-cccccCHHHHhhhhhhhhhhhcCc
Confidence 35678889999999999999999999998887765445666667888876654 777777776666777777666543
No 236
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=28.80 E-value=88 Score=28.95 Aligned_cols=56 Identities=20% Similarity=0.258 Sum_probs=36.5
Q ss_pred EEEEeCCHHHHHHHHH-cCCceecCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCC
Q 016936 83 AFVEMRTVEEASNAMA-LDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLP 161 (380)
Q Consensus 83 afV~f~~~~~a~~ai~-l~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp 161 (380)
|||.|++..+|..|++ +.... .+.+++..+.+ ++-|.-.||.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APe-----------------------------------P~DI~W~NL~ 43 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPE-----------------------------------PDDIIWENLS 43 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCC-----------------------------------cccccccccC
Confidence 7999999999999994 22211 24456654322 2467888887
Q ss_pred CCCCHHHHHHHHHh
Q 016936 162 YYFTETQIKELLES 175 (380)
Q Consensus 162 ~~~t~~~l~~~F~~ 175 (380)
....+..++.++..
T Consensus 44 ~~~~~r~~R~~~~~ 57 (325)
T PF02714_consen 44 ISSKQRFLRRIIVN 57 (325)
T ss_pred CChHHHHHHHHHHH
Confidence 66666666655543
No 237
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=27.23 E-value=2.3e+02 Score=20.15 Aligned_cols=58 Identities=12% Similarity=0.129 Sum_probs=42.3
Q ss_pred EEEEcCCCCCCCHHHHHHHHHh-cCC-eeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHh
Q 016936 154 RVFVGGLPYYFTETQIKELLES-FGT-LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 214 (380)
Q Consensus 154 ~l~V~nlp~~~t~~~l~~~F~~-~G~-i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l 214 (380)
+-|+-..+...+..+|+..++. ||. |..|..+.-+. + .--|||.+...+.|...-..+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~-~--~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR-G--EKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-C--ceEEEEEECCCCcHHHHHHhh
Confidence 3555567888999999999997 664 67776665542 2 124999999999888776654
No 238
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=26.17 E-value=2.6e+02 Score=20.32 Aligned_cols=58 Identities=12% Similarity=0.126 Sum_probs=42.4
Q ss_pred EEEEcCCCCCCCHHHHHHHHHh-cCC-eeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHh
Q 016936 154 RVFVGGLPYYFTETQIKELLES-FGT-LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 214 (380)
Q Consensus 154 ~l~V~nlp~~~t~~~l~~~F~~-~G~-i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l 214 (380)
+-|.--.+...+..+|+..++. ||. |..|..+.-+. + .--|+|.+...+.|......+
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~-~--~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK-G--EKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-C--cEEEEEEeCCCCcHHHHHHhh
Confidence 3455556788999999999997 674 77777665542 2 225999999999998876554
No 239
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=25.88 E-value=73 Score=29.53 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=26.1
Q ss_pred EEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 016936 197 GFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 233 (380)
Q Consensus 197 afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~~ 233 (380)
|||.|++..+|+.|.+.+.... .+.+++..|.+..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~ 35 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPD 35 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcc
Confidence 7999999999999999755443 3555777665543
No 240
>PF06883 RNA_pol_Rpa2_4: RNA polymerase I, Rpa2 specific domain ; InterPro: IPR009674 This domain is found between domain 3 and domain 5, but shows no homology to domain 4 of Rpb2. The external domains in multisubunit RNA polymerase (those most distant from the active site) are known to demonstrate more sequence variability [].; GO: 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent, 0005634 nucleus
Probab=24.42 E-value=84 Score=21.04 Aligned_cols=37 Identities=19% Similarity=0.221 Sum_probs=26.6
Q ss_pred chhhHHHHHHHHcCcccCC-----eEEEEEeccccccccccCCC
Q 016936 342 DAVGCATAKNALSGRKFGG-----NTVNAFYYPEDKYFNKDYSA 380 (380)
Q Consensus 342 ~~~~A~~A~~~l~g~~i~g-----r~l~v~~~~~~~~~~~~~~~ 380 (380)
+.+.|.+..+.|.-.++.| ..+.|-|.+.. ..++|++
T Consensus 5 ~~~~a~~~~~~LR~~Kv~~~~~vP~~lEI~~VP~~--~~g~yPG 46 (58)
T PF06883_consen 5 SPEEAEQIADQLRYLKVEGEHGVPPTLEIGYVPPS--KGGQYPG 46 (58)
T ss_pred cHHHHHHHHHHHHHHHHcCCCCCCCceEEEEEECC--CCCCCCe
Confidence 4667777777775555554 67899999988 6688864
No 241
>PHA01632 hypothetical protein
Probab=24.31 E-value=1.8e+02 Score=19.12 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=18.1
Q ss_pred EEEEcCCCCCCCHHHHHHHHHh
Q 016936 154 RVFVGGLPYYFTETQIKELLES 175 (380)
Q Consensus 154 ~l~V~nlp~~~t~~~l~~~F~~ 175 (380)
-|.|..+|...|+++|+..+.+
T Consensus 18 yilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 18 YILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EEehhhcCCCCCHHHHHHHHHH
Confidence 4667889999999999987663
No 242
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=24.22 E-value=1.2e+02 Score=21.82 Aligned_cols=38 Identities=11% Similarity=0.107 Sum_probs=24.4
Q ss_pred CCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCccc
Q 016936 313 GTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKF 358 (380)
Q Consensus 313 G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i 358 (380)
-.|.++.....- .|+.|||=.+..+...|++.+.+-..
T Consensus 32 l~I~Si~~~~~l--------kGyIyVEA~~~~~V~~ai~gi~~i~~ 69 (84)
T PF03439_consen 32 LNIYSIFAPDSL--------KGYIYVEAERESDVKEAIRGIRHIRG 69 (84)
T ss_dssp ----EEEE-TTS--------TSEEEEEESSHHHHHHHHTT-TTEEE
T ss_pred CceEEEEEeCCC--------ceEEEEEeCCHHHHHHHHhcccceee
Confidence 367777775542 27889999999999999987765543
No 243
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.15 E-value=1.2e+02 Score=30.47 Aligned_cols=39 Identities=15% Similarity=0.234 Sum_probs=34.4
Q ss_pred EEEEEeechhhHHHHHHHHcCcccC--CeEEEEEecccccc
Q 016936 335 KVFLEYYDAVGCATAKNALSGRKFG--GNTVNAFYYPEDKY 373 (380)
Q Consensus 335 ~afV~f~~~~~A~~A~~~l~g~~i~--gr~l~v~~~~~~~~ 373 (380)
||.|+|++++.|.+......|..|. +..|-+.|+|.+-.
T Consensus 270 yAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPDdm~ 310 (650)
T KOG2318|consen 270 YAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPDDMT 310 (650)
T ss_pred EEEEEecCchHHHHHHHhcCcceeccccceeeeeecCCCCc
Confidence 7899999999999999999999985 57788889998653
No 244
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=23.46 E-value=2.7e+02 Score=22.71 Aligned_cols=44 Identities=11% Similarity=0.101 Sum_probs=30.2
Q ss_pred HHHHHhhc--ccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcC
Q 016936 303 EDMREECG--KYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSG 355 (380)
Q Consensus 303 ~~L~~~f~--~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g 355 (380)
+.|.+... ... |.++.++..-+ ||.||+....+++..++..+.|
T Consensus 23 ~~L~~~~~~~~~~-i~~i~vp~~fp--------GYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 23 LMLAMRAKKENLP-IYAILAPPELK--------GYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred HHHHHHHHhCCCc-EEEEEccCCCC--------cEEEEEEEChHHHHHHHhcCCC
Confidence 34444443 233 77777766432 7889999988889889887765
No 245
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=23.43 E-value=42 Score=23.26 Aligned_cols=31 Identities=16% Similarity=0.478 Sum_probs=24.2
Q ss_pred hhhhcccceEEEcCCCCcCcHHHHHHHHHHH
Q 016936 26 QQATRHARRVYVGGLPPLANEQAIATFFSQV 56 (380)
Q Consensus 26 ~~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~ 56 (380)
......+++||||++|..+-.+.=..++...
T Consensus 21 ~~Ls~tSr~vflG~IP~~W~~~~~~~~~k~~ 51 (67)
T PF15407_consen 21 EELSLTSRRVFLGPIPEIWLQDHRKSWYKSL 51 (67)
T ss_pred HHHHHcCceEEECCCChHHHHcCcchHHHHH
Confidence 3556889999999999998777666666655
No 246
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=21.62 E-value=2.8e+02 Score=23.36 Aligned_cols=52 Identities=15% Similarity=0.166 Sum_probs=35.1
Q ss_pred HHHHHhhcccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccC
Q 016936 303 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFG 359 (380)
Q Consensus 303 ~~L~~~f~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~ 359 (380)
++|.++-+ |.+..+..-+..+.....+ |-.||.|.+.++|.+.++. ++-.+.
T Consensus 124 ~~l~qw~~--~k~~nv~mr~~~~k~~~fk--Gsvkv~f~tk~qa~a~~~~-~e~~~~ 175 (205)
T KOG4213|consen 124 DDLNQWAS--GKGHNVKMRRHGNKAHPFK--GSVKVTFQTKEQAFANDDT-HEEKGA 175 (205)
T ss_pred HHHHHHhc--ccceEeeccccCCCCCCCC--CceEEEeecHHHHHhhhhh-hhhhcc
Confidence 56766666 8999988866544322233 5669999999999887764 444333
No 247
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=20.84 E-value=1.8e+02 Score=25.01 Aligned_cols=69 Identities=19% Similarity=0.263 Sum_probs=42.2
Q ss_pred HHHHhhcccCC---eEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccC-------CeEEEEEecccccc
Q 016936 304 DMREECGKYGT---LVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFG-------GNTVNAFYYPEDKY 373 (380)
Q Consensus 304 ~L~~~f~~~G~---I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~-------gr~l~v~~~~~~~~ 373 (380)
++++...+.|. |....+... ...|+=| .-...++++|..+...|=|+.+. |..++--+..+...
T Consensus 29 ea~~~~~~l~~~~~VvKaQvl~G----gRGK~Gg--Vk~~~s~~ea~~~a~~mlg~~l~T~Qtg~~G~~v~~vlvee~v~ 102 (202)
T PF08442_consen 29 EAREAAKELGGKPLVVKAQVLAG----GRGKAGG--VKIAKSPEEAKEAAKEMLGKTLKTKQTGPKGEKVNKVLVEEFVD 102 (202)
T ss_dssp HHHHHHHHHTTSSEEEEE-SSSS----TTTTTTC--EEEESSHHHHHHHHHTTTTSEEE-TTSTTTEEEE--EEEEE---
T ss_pred HHHHHHHHhCCCcEEEEEeEeec----CcccCCc--eeecCCHHHHHHHHHHHhCCceEeeecCCCCCEeeEEEEEecCc
Confidence 55555555553 666666542 2234434 33455899999999999999997 88888888877766
Q ss_pred ccccC
Q 016936 374 FNKDY 378 (380)
Q Consensus 374 ~~~~~ 378 (380)
+.++|
T Consensus 103 ~~~E~ 107 (202)
T PF08442_consen 103 IKREY 107 (202)
T ss_dssp CCEEE
T ss_pred cCceE
Confidence 66554
No 248
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=20.19 E-value=1.5e+02 Score=20.50 Aligned_cols=27 Identities=7% Similarity=0.057 Sum_probs=22.3
Q ss_pred EEEEEeechhhHHHHHHHHcCcccCCe
Q 016936 335 KVFLEYYDAVGCATAKNALSGRKFGGN 361 (380)
Q Consensus 335 ~afV~f~~~~~A~~A~~~l~g~~i~gr 361 (380)
..+|.|.+..+|-+|-+.|...-+..+
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~~ 29 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPVR 29 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcEE
Confidence 459999999999999999987766443
Done!