Query 016936
Match_columns 380
No_of_seqs 139 out of 1880
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 06:14:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016936.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016936hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 1.7E-42 5.8E-47 317.1 28.6 248 27-373 17-266 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 1.8E-41 6E-46 311.6 25.4 248 27-371 36-291 (292)
3 2g4b_A Splicing factor U2AF 65 100.0 1E-32 3.5E-37 233.0 22.5 171 30-230 2-172 (172)
4 2yh0_A Splicing factor U2AF 65 100.0 4E-32 1.4E-36 234.7 25.2 194 30-233 2-195 (198)
5 4f02_A Polyadenylate-binding p 100.0 6.3E-32 2.1E-36 236.3 17.8 164 27-231 10-180 (213)
6 3md3_A Nuclear and cytoplasmic 100.0 2.3E-31 8E-36 223.1 18.9 159 33-230 1-165 (166)
7 1fje_B Nucleolin RBD12, protei 100.0 1E-30 3.4E-35 221.5 19.5 167 27-232 8-174 (175)
8 1l3k_A Heterogeneous nuclear r 100.0 1.3E-30 4.4E-35 224.8 18.8 172 28-235 9-186 (196)
9 1fxl_A Paraneoplastic encephal 100.0 2.2E-30 7.6E-35 217.3 19.6 158 31-229 1-167 (167)
10 1b7f_A Protein (SXL-lethal pro 100.0 2.6E-30 8.8E-35 217.3 18.8 158 31-229 2-168 (168)
11 2qfj_A FBP-interacting repress 100.0 8E-31 2.7E-35 229.7 14.9 178 26-233 22-206 (216)
12 4f02_A Polyadenylate-binding p 100.0 4.6E-30 1.6E-34 224.5 17.2 167 151-371 14-181 (213)
13 2cjk_A Nuclear polyadenylated 100.0 1.7E-30 5.7E-35 218.3 12.8 160 30-232 1-166 (167)
14 3nmr_A Cugbp ELAV-like family 100.0 7.6E-30 2.6E-34 215.8 16.5 158 31-229 2-174 (175)
15 3md3_A Nuclear and cytoplasmic 100.0 9.6E-29 3.3E-33 207.1 20.0 166 153-370 1-166 (166)
16 1b7f_A Protein (SXL-lethal pro 100.0 1.1E-28 3.7E-33 207.4 19.7 164 152-368 3-168 (168)
17 3tyt_A Heterogeneous nuclear r 100.0 6.4E-29 2.2E-33 215.3 18.0 185 31-229 3-204 (205)
18 1fxl_A Paraneoplastic encephal 100.0 2E-28 6.8E-33 205.4 20.4 163 153-368 3-167 (167)
19 3sde_A Paraspeckle component 1 100.0 6.5E-29 2.2E-33 224.0 18.0 159 26-232 16-179 (261)
20 2adc_A Polypyrimidine tract-bi 100.0 2.8E-28 9.7E-33 215.5 21.6 186 29-232 31-228 (229)
21 3pgw_A U1-A; protein-RNA compl 100.0 2.2E-28 7.6E-33 223.1 18.7 187 27-230 4-281 (282)
22 2qfj_A FBP-interacting repress 100.0 4.8E-28 1.6E-32 212.0 19.7 179 153-373 29-207 (216)
23 1l3k_A Heterogeneous nuclear r 100.0 9.7E-28 3.3E-32 206.8 19.4 175 150-373 11-185 (196)
24 3nmr_A Cugbp ELAV-like family 100.0 1.5E-27 5.2E-32 201.6 18.9 165 152-369 3-175 (175)
25 2ghp_A U4/U6 snRNA-associated 100.0 1.4E-27 4.9E-32 218.8 18.7 168 30-232 115-291 (292)
26 1qm9_A Polypyrimidine tract-bi 100.0 8.6E-28 2.9E-32 207.6 16.2 184 31-232 2-197 (198)
27 3smz_A Protein raver-1, ribonu 100.0 3E-27 1E-31 215.8 18.1 165 30-233 93-265 (284)
28 2cjk_A Nuclear polyadenylated 99.9 2.3E-27 7.7E-32 199.1 15.0 162 153-371 4-166 (167)
29 3pgw_A U1-A; protein-RNA compl 99.9 4.1E-26 1.4E-30 208.1 22.5 198 151-369 8-281 (282)
30 2g4b_A Splicing factor U2AF 65 99.9 5.7E-26 2E-30 191.5 18.1 157 153-369 5-172 (172)
31 2yh0_A Splicing factor U2AF 65 99.9 1.6E-25 5.6E-30 193.1 20.3 181 152-372 4-195 (198)
32 1fje_B Nucleolin RBD12, protei 99.9 1.8E-26 6.2E-31 195.2 14.0 164 149-371 10-174 (175)
33 2adc_A Polypyrimidine tract-bi 99.9 2.7E-25 9.4E-30 196.3 19.3 193 150-371 32-228 (229)
34 3tyt_A Heterogeneous nuclear r 99.9 3.6E-25 1.2E-29 191.7 18.6 181 152-361 4-193 (205)
35 1qm9_A Polypyrimidine tract-bi 99.9 1.8E-25 6.2E-30 193.0 15.6 187 152-371 3-197 (198)
36 3sde_A Paraspeckle component 1 99.9 9.8E-24 3.3E-28 190.1 18.8 157 150-372 20-180 (261)
37 2kn4_A Immunoglobulin G-bindin 99.9 2.4E-21 8.1E-26 160.9 15.1 140 78-233 11-151 (158)
38 3v4m_A Splicing factor U2AF 65 99.9 1.2E-21 4.1E-26 150.4 10.9 103 275-378 2-104 (105)
39 2i2y_A Fusion protein consists 99.8 5.1E-20 1.7E-24 151.5 12.3 136 78-232 11-148 (150)
40 4fxv_A ELAV-like protein 1; RN 99.8 9.7E-20 3.3E-24 138.5 11.8 80 152-231 19-98 (99)
41 3ue2_A Poly(U)-binding-splicin 99.8 1.8E-20 6.2E-25 146.5 7.6 101 275-380 17-118 (118)
42 2lxi_A RNA-binding protein 10; 99.8 3.7E-19 1.3E-23 133.1 8.2 82 153-234 2-85 (91)
43 4f25_A Polyadenylate-binding p 99.8 3.3E-19 1.1E-23 139.6 7.9 105 31-168 4-113 (115)
44 3s8s_A Histone-lysine N-methyl 99.8 2E-18 6.9E-23 133.7 11.9 80 151-230 5-84 (110)
45 3s6e_A RNA-binding protein 39; 99.8 7.4E-19 2.5E-23 136.3 8.9 95 275-376 4-98 (114)
46 2lkz_A RNA-binding protein 5; 99.8 1.1E-18 3.9E-23 131.1 9.5 82 150-231 7-94 (95)
47 2pe8_A Splicing factor 45; RRM 99.8 1.7E-18 5.8E-23 132.7 9.2 99 275-380 5-103 (105)
48 3bs9_A Nucleolysin TIA-1 isofo 99.8 5.3E-18 1.8E-22 125.8 11.1 82 151-232 5-86 (87)
49 1x5s_A Cold-inducible RNA-bind 99.7 7.7E-18 2.6E-22 128.9 11.4 88 148-235 8-95 (102)
50 3md1_A Nuclear and cytoplasmic 99.7 9.7E-18 3.3E-22 123.2 11.4 80 153-232 2-81 (83)
51 4f25_A Polyadenylate-binding p 99.7 6.4E-18 2.2E-22 132.2 11.0 80 152-233 5-84 (115)
52 2dnz_A Probable RNA-binding pr 99.7 1E-17 3.4E-22 126.5 11.6 85 150-234 3-87 (95)
53 2dgo_A Cytotoxic granule-assoc 99.7 1.6E-17 5.4E-22 130.1 13.1 88 148-235 11-98 (115)
54 2cqb_A Peptidyl-prolyl CIS-tra 99.7 7.4E-18 2.5E-22 129.0 11.0 87 149-235 9-95 (102)
55 2e5h_A Zinc finger CCHC-type a 99.7 9.1E-18 3.1E-22 126.4 11.2 82 149-230 13-94 (94)
56 1whw_A Hypothetical protein ri 99.7 1.3E-17 4.4E-22 126.9 12.0 85 150-234 6-90 (99)
57 2cqc_A Arginine/serine-rich sp 99.7 1.2E-17 4E-22 126.1 11.6 83 149-231 12-94 (95)
58 2dnm_A SRP46 splicing factor; 99.7 1E-17 3.6E-22 128.4 11.1 85 149-233 10-94 (103)
59 2cq0_A Eukaryotic translation 99.7 1.1E-17 3.7E-22 128.3 11.2 86 149-234 12-97 (103)
60 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1E-17 3.5E-22 123.6 10.6 80 151-230 6-85 (85)
61 1x5t_A Splicing factor 3B subu 99.7 1.3E-17 4.5E-22 126.1 10.8 85 151-235 4-89 (96)
62 2dgs_A DAZ-associated protein 99.7 1.9E-17 6.6E-22 125.9 11.7 85 150-235 8-92 (99)
63 2dgp_A Bruno-like 4, RNA bindi 99.7 1.7E-17 5.7E-22 127.9 11.4 86 149-234 10-98 (106)
64 1x5u_A Splicing factor 3B subu 99.7 2.3E-17 7.9E-22 126.9 12.0 86 149-234 12-97 (105)
65 3p5t_L Cleavage and polyadenyl 99.7 2.9E-18 9.9E-23 128.1 6.6 80 153-232 2-83 (90)
66 2x1f_A MRNA 3'-END-processing 99.7 2.2E-17 7.4E-22 124.9 11.5 81 153-233 3-83 (96)
67 2div_A TRNA selenocysteine ass 99.7 1.5E-17 5.1E-22 126.5 10.5 84 149-232 6-94 (99)
68 2do4_A Squamous cell carcinoma 99.7 4.1E-17 1.4E-21 124.3 13.0 83 150-233 15-97 (100)
69 1x4h_A RNA-binding protein 28; 99.7 3E-17 1E-21 127.6 12.4 87 149-235 12-104 (111)
70 2cpz_A CUG triplet repeat RNA- 99.7 2.9E-17 9.9E-22 128.5 12.0 86 150-235 23-108 (115)
71 2jrs_A RNA-binding protein 39; 99.7 1.9E-17 6.3E-22 128.0 10.7 85 148-232 22-106 (108)
72 2ywk_A Putative RNA-binding pr 99.7 2.2E-17 7.4E-22 124.6 10.8 80 150-230 14-93 (95)
73 2cph_A RNA binding motif prote 99.7 4.4E-17 1.5E-21 125.8 12.1 87 149-235 12-100 (107)
74 2cpf_A RNA binding motif prote 99.7 2.1E-17 7.2E-22 125.5 10.1 84 151-234 4-90 (98)
75 3ns6_A Eukaryotic translation 99.7 4.8E-18 1.6E-22 129.5 6.4 80 152-231 6-92 (100)
76 2dh8_A DAZ-associated protein 99.7 2.9E-17 9.9E-22 126.3 10.6 87 148-235 12-98 (105)
77 3s7r_A Heterogeneous nuclear r 99.7 4.9E-17 1.7E-21 120.5 11.4 79 150-229 9-87 (87)
78 2dgx_A KIAA0430 protein; RRM d 99.7 6.6E-17 2.2E-21 122.2 11.9 81 150-233 7-91 (96)
79 3ucg_A Polyadenylate-binding p 99.7 5.4E-17 1.8E-21 120.8 11.3 79 153-232 7-85 (89)
80 2kn4_A Immunoglobulin G-bindin 99.7 8.5E-17 2.9E-21 133.3 13.7 150 181-373 2-152 (158)
81 2cqi_A Nucleolysin TIAR; RNA r 99.7 1.3E-16 4.4E-21 122.3 13.6 85 149-235 12-96 (103)
82 1rk8_A CG8781-PA, CG8781-PA pr 99.7 3.8E-17 1.3E-21 136.4 11.5 141 85-234 11-154 (165)
83 2la6_A RNA-binding protein FUS 99.7 5.7E-17 1.9E-21 123.3 11.5 80 151-230 12-99 (99)
84 2dng_A Eukaryotic translation 99.7 6.2E-17 2.1E-21 124.0 11.7 85 149-235 12-96 (103)
85 2dnh_A Bruno-like 5, RNA bindi 99.7 8.1E-17 2.8E-21 123.8 12.4 85 150-235 13-100 (105)
86 1p27_B RNA-binding protein 8A; 99.7 4.5E-17 1.5E-21 125.5 10.9 82 151-232 22-103 (106)
87 2lea_A Serine/arginine-rich sp 99.7 9.1E-18 3.1E-22 135.1 7.0 124 81-234 5-129 (135)
88 2ek1_A RNA-binding protein 12; 99.7 1.4E-17 4.8E-22 125.6 7.6 82 149-230 12-93 (95)
89 2cqp_A RNA-binding protein 12; 99.7 3.3E-17 1.1E-21 124.4 9.6 84 149-232 12-95 (98)
90 2cq3_A RNA-binding protein 9; 99.7 1.7E-16 5.7E-21 121.6 13.5 85 149-235 12-96 (103)
91 4a8x_A RNA-binding protein wit 99.7 4.5E-17 1.6E-21 120.9 10.1 81 152-232 4-85 (88)
92 1oo0_B CG8781-PA, drosophila Y 99.7 6.1E-17 2.1E-21 125.6 11.1 83 151-233 25-107 (110)
93 2d9p_A Polyadenylate-binding p 99.7 6.5E-17 2.2E-21 123.9 11.2 85 149-235 12-96 (103)
94 1wi8_A EIF-4B, eukaryotic tran 99.7 6E-17 2E-21 124.3 10.9 84 150-235 13-97 (104)
95 2dgv_A HnRNP M, heterogeneous 99.7 7.4E-17 2.5E-21 120.9 11.0 82 150-233 6-87 (92)
96 2cpe_A RNA-binding protein EWS 99.7 8.9E-17 3.1E-21 125.3 11.8 85 150-234 13-105 (113)
97 2khc_A Testis-specific RNP-typ 99.7 9.3E-17 3.2E-21 126.2 11.8 82 148-229 36-117 (118)
98 2fy1_A RNA-binding motif prote 99.7 7.7E-17 2.6E-21 126.2 11.0 83 150-233 5-87 (116)
99 2cqd_A RNA-binding region cont 99.7 1.2E-16 4E-21 125.2 12.0 83 149-232 14-96 (116)
100 3ulh_A THO complex subunit 4; 99.7 1.2E-16 3.9E-21 123.4 11.7 82 148-230 25-106 (107)
101 2wbr_A GW182, gawky, LD47780P; 99.7 7.7E-17 2.6E-21 116.8 9.9 73 152-230 7-79 (89)
102 2i2y_A Fusion protein consists 99.7 1.4E-16 4.6E-21 130.9 12.7 139 190-372 9-149 (150)
103 2do0_A HnRNP M, heterogeneous 99.7 2E-16 6.7E-21 123.6 13.0 83 149-232 12-94 (114)
104 2cqg_A TDP-43, TAR DNA-binding 99.7 2.2E-16 7.4E-21 121.0 12.9 85 149-235 12-96 (103)
105 1s79_A Lupus LA protein; RRM, 99.7 3.1E-17 1.1E-21 125.3 8.0 77 152-230 11-87 (103)
106 2kxn_B Transformer-2 protein h 99.7 5.5E-17 1.9E-21 129.4 9.7 84 149-232 43-126 (129)
107 2mss_A Protein (musashi1); RNA 99.7 2.4E-17 8.3E-22 118.5 6.9 75 154-229 1-75 (75)
108 2rs2_A Musashi-1, RNA-binding 99.7 7.9E-17 2.7E-21 124.7 10.1 85 150-235 23-107 (109)
109 3n9u_C Cleavage and polyadenyl 99.7 9.3E-17 3.2E-21 132.3 11.0 81 151-231 54-136 (156)
110 2dhg_A TRNA selenocysteine ass 99.7 7.4E-17 2.5E-21 123.8 9.7 84 151-235 8-93 (104)
111 1u6f_A Tcubp1, RNA-binding pro 99.7 1.9E-16 6.4E-21 128.3 12.3 87 149-235 39-125 (139)
112 1p1t_A Cleavage stimulation fa 99.7 6.9E-17 2.4E-21 124.0 8.8 80 153-232 9-88 (104)
113 2dgw_A Probable RNA-binding pr 99.7 3.1E-16 1.1E-20 117.2 12.0 81 150-233 8-88 (91)
114 1sjq_A Polypyrimidine tract-bi 99.7 1.3E-16 4.3E-21 121.2 9.8 79 151-235 15-95 (105)
115 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 2.6E-16 8.9E-21 127.6 12.5 83 147-229 58-140 (140)
116 1x4e_A RNA binding motif, sing 99.7 1.4E-17 4.9E-22 122.9 4.5 80 151-230 4-83 (85)
117 2wbr_A GW182, gawky, LD47780P; 99.7 1.3E-16 4.5E-21 115.5 9.4 73 31-115 6-79 (89)
118 2err_A Ataxin-2-binding protei 99.7 1.6E-16 5.5E-21 123.0 10.6 82 149-232 26-107 (109)
119 3lqv_A PRE-mRNA branch site pr 99.7 1.3E-16 4.5E-21 124.8 10.1 78 151-231 7-84 (115)
120 2kt5_A RNA and export factor-b 99.7 5.1E-16 1.7E-20 123.1 13.5 85 149-234 32-116 (124)
121 1uaw_A Mouse-musashi-1; RNP-ty 99.7 4.8E-17 1.7E-21 117.6 6.8 76 153-229 1-76 (77)
122 3r27_A HnRNP L, heterogeneous 99.7 2.4E-16 8.2E-21 118.5 10.6 77 150-232 19-97 (100)
123 2m2b_A RNA-binding protein 10; 99.7 5.2E-17 1.8E-21 130.1 7.4 84 149-233 20-109 (131)
124 3ex7_B RNA-binding protein 8A; 99.7 1.8E-16 6.3E-21 126.1 10.5 85 151-235 21-105 (126)
125 1sjq_A Polypyrimidine tract-bi 99.7 1.4E-16 4.8E-21 121.0 9.1 78 29-118 13-93 (105)
126 1x4a_A Splicing factor, argini 99.7 5.1E-16 1.7E-20 120.2 12.5 84 149-235 19-102 (109)
127 2hvz_A Splicing factor, argini 99.7 8.2E-17 2.8E-21 122.9 7.9 74 33-118 1-76 (101)
128 2cq4_A RNA binding motif prote 99.7 1.6E-16 5.6E-21 124.0 9.7 78 153-231 26-103 (114)
129 2ki2_A SS-DNA binding protein 99.7 3.3E-17 1.1E-21 122.3 5.3 79 153-232 2-80 (90)
130 3r27_A HnRNP L, heterogeneous 99.7 1.2E-16 4.1E-21 120.1 8.3 79 28-118 17-98 (100)
131 4fxv_A ELAV-like protein 1; RN 99.7 1.2E-16 4E-21 121.3 8.2 77 27-115 14-97 (99)
132 2cpi_A CCR4-NOT transcription 99.7 2E-16 6.8E-21 122.9 9.6 83 151-233 14-102 (111)
133 1h2v_Z 20 kDa nuclear CAP bind 99.7 6.3E-16 2.1E-20 127.7 12.8 85 150-234 37-121 (156)
134 2cpy_A RNA-binding protein 12; 99.7 1.9E-16 6.4E-21 123.6 8.9 81 149-231 12-93 (114)
135 1x4b_A Heterogeneous nuclear r 99.7 2.6E-16 8.8E-21 123.3 9.7 82 153-235 28-109 (116)
136 2cq1_A PTB-like protein L; RRM 99.7 5.8E-16 2E-20 117.5 11.3 79 150-234 13-93 (101)
137 2nlw_A Eukaryotic translation 99.7 4.2E-16 1.4E-20 119.8 10.6 80 152-233 15-101 (105)
138 2dis_A Unnamed protein product 99.7 3.9E-16 1.3E-20 120.8 10.4 83 152-234 8-94 (109)
139 2j76_E EIF-4B, EIF4B, eukaryot 99.7 8.1E-17 2.8E-21 122.6 6.2 81 150-232 17-98 (100)
140 1wez_A HnRNP H', FTP-3, hetero 99.7 2.8E-16 9.5E-21 120.0 9.1 81 149-232 12-92 (102)
141 2db1_A Heterogeneous nuclear r 99.7 3.5E-16 1.2E-20 122.8 9.7 79 150-230 15-96 (118)
142 2jwn_A Embryonic polyadenylate 99.7 4.1E-16 1.4E-20 123.7 10.0 79 153-232 37-115 (124)
143 1iqt_A AUF1, heterogeneous nuc 99.7 1.2E-16 4E-21 114.9 6.2 75 154-229 1-75 (75)
144 1wg5_A Heterogeneous nuclear r 99.7 3.9E-16 1.3E-20 119.7 9.5 81 150-232 13-94 (104)
145 3lqv_A PRE-mRNA branch site pr 99.7 1E-16 3.6E-21 125.3 6.2 101 29-178 5-109 (115)
146 1x4g_A Nucleolysin TIAR; struc 99.6 9.8E-16 3.3E-20 118.6 11.5 91 16-118 9-100 (109)
147 1wex_A Hypothetical protein (r 99.6 7.6E-16 2.6E-20 117.6 10.5 79 149-233 12-92 (104)
148 2fc9_A NCL protein; structure 99.6 7.8E-16 2.7E-20 117.4 10.6 81 149-233 12-92 (101)
149 2dnn_A RNA-binding protein 12; 99.6 3.2E-16 1.1E-20 120.7 8.4 75 153-230 17-91 (109)
150 2lxi_A RNA-binding protein 10; 99.6 2E-16 6.7E-21 118.2 6.8 80 32-117 1-83 (91)
151 2dnq_A RNA-binding protein 4B; 99.6 9.9E-16 3.4E-20 114.2 10.7 78 150-235 6-83 (90)
152 2hgl_A HNRPF protein, heteroge 99.6 3.5E-16 1.2E-20 125.4 8.6 79 150-230 42-123 (136)
153 1x4c_A Splicing factor, argini 99.6 1.8E-15 6.2E-20 116.8 12.3 78 150-234 13-95 (108)
154 1x5o_A RNA binding motif, sing 99.6 1E-15 3.5E-20 119.5 10.8 82 150-232 23-112 (114)
155 2jvr_A Nucleolar protein 3; RN 99.6 7.1E-16 2.4E-20 119.1 9.7 78 151-232 27-105 (111)
156 2la4_A Nuclear and cytoplasmic 99.6 3E-16 1E-20 119.7 7.4 76 29-116 24-100 (101)
157 2xnq_A Nuclear polyadenylated 99.6 7E-16 2.4E-20 116.7 9.2 87 16-116 6-94 (97)
158 2a3j_A U1 small nuclear ribonu 99.6 1E-15 3.6E-20 121.2 10.6 79 151-232 28-110 (127)
159 1x4d_A Matrin 3; structural ge 99.6 5.5E-16 1.9E-20 117.6 8.6 77 151-233 14-93 (102)
160 2krb_A Eukaryotic translation 99.6 1.8E-16 6.3E-21 115.7 5.7 72 153-226 2-80 (81)
161 2ytc_A PRE-mRNA-splicing facto 99.6 1.4E-15 4.7E-20 112.1 10.4 75 150-230 10-85 (85)
162 2ad9_A Polypyrimidine tract-bi 99.6 2.4E-16 8.2E-21 122.7 6.5 91 17-119 16-109 (119)
163 2ad9_A Polypyrimidine tract-bi 99.6 1.2E-15 4.1E-20 118.8 10.3 79 151-235 30-110 (119)
164 2cpz_A CUG triplet repeat RNA- 99.6 9.3E-16 3.2E-20 119.9 9.7 85 22-118 15-106 (115)
165 2cpj_A Non-POU domain-containi 99.6 1.5E-15 5.3E-20 115.3 10.6 79 149-233 12-90 (99)
166 2cq1_A PTB-like protein L; RRM 99.6 6.5E-16 2.2E-20 117.3 8.4 81 27-119 10-93 (101)
167 2dnp_A RNA-binding protein 14; 99.6 2.3E-15 7.8E-20 112.2 11.2 77 150-234 7-83 (90)
168 1why_A Hypothetical protein ri 99.6 1.1E-15 3.8E-20 115.6 9.5 77 29-117 14-93 (97)
169 2fc8_A NCL protein; structure 99.6 1.8E-15 6.3E-20 115.5 10.8 83 149-234 12-94 (102)
170 1wex_A Hypothetical protein (r 99.6 7.1E-16 2.4E-20 117.8 8.2 79 29-119 12-93 (104)
171 1fj7_A Nucleolin RBD1, protein 99.6 2.4E-15 8.3E-20 114.6 11.3 83 28-117 13-95 (101)
172 2dgt_A RNA-binding protein 30; 99.6 3.6E-15 1.2E-19 111.6 11.9 77 150-234 8-84 (92)
173 2j8a_A Histone-lysine N-methyl 99.6 1.1E-15 3.6E-20 118.3 9.0 78 153-230 3-94 (136)
174 2lmi_A GRSF-1, G-rich sequence 99.6 2.8E-16 9.4E-21 121.2 5.8 80 149-230 8-90 (107)
175 2hzc_A Splicing factor U2AF 65 99.6 1.5E-15 5E-20 112.4 9.6 85 29-114 3-87 (87)
176 1why_A Hypothetical protein ri 99.6 3.2E-15 1.1E-19 113.1 11.6 77 151-233 16-94 (97)
177 1fj7_A Nucleolin RBD1, protein 99.6 1.5E-16 5.1E-21 121.4 4.1 82 151-234 16-97 (101)
178 1x4f_A Matrin 3; structural ge 99.6 4.3E-16 1.5E-20 119.9 6.5 80 27-118 20-103 (112)
179 1wel_A RNA-binding protein 12; 99.6 6.8E-16 2.3E-20 122.4 7.9 82 149-231 22-103 (124)
180 1x4d_A Matrin 3; structural ge 99.6 3.5E-16 1.2E-20 118.7 5.8 78 29-118 12-93 (102)
181 2dgu_A Heterogeneous nuclear r 99.6 4.1E-15 1.4E-19 113.8 11.9 78 150-235 9-86 (103)
182 2cqi_A Nucleolysin TIAR; RNA r 99.6 3.9E-15 1.3E-19 113.9 11.7 80 27-118 10-94 (103)
183 2jvo_A Nucleolar protein 3; nu 99.6 1.9E-15 6.6E-20 116.5 9.9 77 149-233 28-104 (108)
184 1x4g_A Nucleolysin TIAR; struc 99.6 2.9E-15 9.9E-20 115.9 10.9 78 151-234 24-101 (109)
185 3q2s_C Cleavage and polyadenyl 99.6 1E-15 3.5E-20 134.3 9.3 81 151-231 67-149 (229)
186 2khc_A Testis-specific RNP-typ 99.6 1.3E-15 4.3E-20 119.7 8.7 76 27-114 35-117 (118)
187 2err_A Ataxin-2-binding protei 99.6 4.5E-16 1.6E-20 120.4 6.0 90 16-117 13-107 (109)
188 2cpx_A Hypothetical protein FL 99.6 6E-16 2.1E-20 121.0 6.7 86 150-235 23-108 (115)
189 1nu4_A U1A RNA binding domain; 99.6 1.2E-15 4E-20 115.5 8.1 79 151-232 7-89 (97)
190 2la4_A Nuclear and cytoplasmic 99.6 1.7E-15 6E-20 115.4 9.0 75 151-231 26-100 (101)
191 2cpx_A Hypothetical protein FL 99.6 5.7E-15 1.9E-19 115.4 12.1 85 28-118 21-106 (115)
192 2ytc_A PRE-mRNA-splicing facto 99.6 1E-15 3.5E-20 112.8 7.3 75 28-114 8-84 (85)
193 1whx_A Hypothetical protein ri 99.6 6.4E-16 2.2E-20 119.9 6.4 77 28-116 6-83 (111)
194 3s8s_A Histone-lysine N-methyl 99.6 1.2E-15 4.1E-20 118.0 7.8 77 30-118 4-87 (110)
195 2e5j_A Methenyltetrahydrofolat 99.6 3.1E-15 1.1E-19 113.1 10.0 78 150-232 17-94 (97)
196 1x4a_A Splicing factor, argini 99.6 5E-15 1.7E-19 114.5 11.2 80 27-118 17-100 (109)
197 2hvz_A Splicing factor, argini 99.6 1.7E-15 5.7E-20 115.6 8.4 76 153-233 1-76 (101)
198 2xs2_A Deleted in azoospermia- 99.6 1.2E-15 4.2E-20 116.5 7.6 79 152-233 9-87 (102)
199 2jvo_A Nucleolar protein 3; nu 99.6 1.3E-15 4.6E-20 117.5 7.8 80 24-117 23-103 (108)
200 2cqh_A IGF-II mRNA-binding pro 99.6 2.5E-15 8.7E-20 112.7 9.1 79 150-235 6-86 (93)
201 2jvr_A Nucleolar protein 3; RN 99.6 2.2E-15 7.4E-20 116.3 8.9 78 27-116 23-104 (111)
202 2lkz_A RNA-binding protein 5; 99.6 3.7E-16 1.3E-20 117.3 4.5 80 27-116 4-94 (95)
203 2cpj_A Non-POU domain-containi 99.6 8.3E-16 2.8E-20 116.8 6.3 79 27-117 10-89 (99)
204 2e5j_A Methenyltetrahydrofolat 99.6 3.6E-15 1.2E-19 112.8 9.7 79 28-117 15-94 (97)
205 2do4_A Squamous cell carcinoma 99.6 3.1E-15 1.1E-19 113.8 9.2 79 27-117 12-96 (100)
206 2xnq_A Nuclear polyadenylated 99.6 7.9E-15 2.7E-19 110.8 11.3 74 151-232 21-95 (97)
207 3pgw_S U1-70K; protein-RNA com 99.6 3.8E-16 1.3E-20 149.7 4.9 83 151-233 101-183 (437)
208 2cpf_A RNA binding motif prote 99.6 3E-15 1E-19 113.4 8.5 77 30-118 3-89 (98)
209 2dnq_A RNA-binding protein 4B; 99.6 4.5E-15 1.5E-19 110.6 9.3 76 29-118 5-81 (90)
210 2dgo_A Cytotoxic granule-assoc 99.6 6.1E-15 2.1E-19 115.2 10.5 82 26-119 9-97 (115)
211 1whx_A Hypothetical protein ri 99.6 3.4E-15 1.2E-19 115.8 8.9 76 153-234 11-86 (111)
212 2ywk_A Putative RNA-binding pr 99.6 2.2E-15 7.4E-20 113.5 7.6 79 26-116 10-94 (95)
213 2dha_A FLJ20171 protein; RRM d 99.6 1.9E-15 6.3E-20 119.0 7.4 78 151-230 22-103 (123)
214 3md1_A Nuclear and cytoplasmic 99.6 2.9E-15 9.9E-20 109.8 8.0 74 32-117 1-81 (83)
215 1x4c_A Splicing factor, argini 99.6 1.5E-14 5.1E-19 111.6 12.5 76 30-118 13-94 (108)
216 2cpd_A Apobec-1 stimulating pr 99.6 8.1E-15 2.8E-19 111.3 10.7 80 25-118 8-90 (99)
217 2cq3_A RNA-binding protein 9; 99.6 5.2E-15 1.8E-19 113.2 9.7 80 27-118 10-94 (103)
218 2lcw_A RNA-binding protein FUS 99.4 1E-16 3.4E-21 125.7 0.0 81 152-232 7-95 (116)
219 2dgx_A KIAA0430 protein; RRM d 99.6 6.3E-15 2.2E-19 111.2 10.0 76 30-117 7-90 (96)
220 2e5h_A Zinc finger CCHC-type a 99.6 3E-15 1E-19 112.5 8.1 76 27-114 11-93 (94)
221 2cqc_A Arginine/serine-rich sp 99.6 3.7E-15 1.3E-19 112.2 8.5 78 27-116 10-94 (95)
222 2hgm_A HNRPF protein, heteroge 99.6 2.3E-15 7.8E-20 118.7 7.5 80 149-231 39-120 (126)
223 3bs9_A Nucleolysin TIA-1 isofo 99.6 2.4E-15 8.4E-20 111.2 7.3 76 29-116 3-85 (87)
224 2f3j_A RNA and export factor b 99.6 5.2E-15 1.8E-19 124.5 10.2 84 148-232 84-167 (177)
225 2dgs_A DAZ-associated protein 99.6 4.2E-15 1.4E-19 112.9 8.7 79 28-118 6-90 (99)
226 2cph_A RNA binding motif prote 99.6 5.8E-15 2E-19 113.7 9.6 80 27-118 10-98 (107)
227 2x1f_A MRNA 3'-END-processing 99.6 4.9E-15 1.7E-19 111.8 9.0 77 31-119 1-84 (96)
228 1s79_A Lupus LA protein; RRM, 99.6 2.5E-15 8.7E-20 114.7 7.4 79 27-117 6-89 (103)
229 3mdf_A Peptidyl-prolyl CIS-tra 99.6 3.2E-15 1.1E-19 110.1 7.7 74 29-114 4-84 (85)
230 1whw_A Hypothetical protein ri 99.6 8.3E-15 2.9E-19 111.2 10.2 78 29-118 5-89 (99)
231 2rs2_A Musashi-1, RNA-binding 99.6 4.3E-15 1.5E-19 114.9 8.7 83 23-117 16-104 (109)
232 1jmt_A Splicing factor U2AF 35 99.6 5.9E-15 2E-19 112.8 9.3 88 278-369 1-104 (104)
233 2cq4_A RNA binding motif prote 99.6 2.5E-15 8.7E-20 117.2 7.4 80 25-116 18-103 (114)
234 1wf1_A RNA-binding protein RAL 99.6 1.1E-14 3.7E-19 112.8 10.8 73 152-232 27-100 (110)
235 2a3j_A U1 small nuclear ribonu 99.6 6.1E-15 2.1E-19 116.8 9.5 79 28-118 25-111 (127)
236 3s7r_A Heterogeneous nuclear r 99.6 3.1E-15 1.1E-19 110.7 7.3 76 27-114 6-87 (87)
237 1fjc_A Nucleolin RBD2, protein 99.6 3.4E-15 1.2E-19 112.6 7.7 78 151-233 15-92 (96)
238 2e44_A Insulin-like growth fac 99.6 9E-15 3.1E-19 110.3 10.0 78 151-232 14-92 (96)
239 1wg1_A KIAA1579 protein, homol 99.6 5.1E-15 1.7E-19 109.8 8.4 75 151-232 4-78 (88)
240 2e5g_A U6 snRNA-specific termi 99.6 8.2E-15 2.8E-19 110.1 9.6 79 150-234 6-84 (94)
241 1wf1_A RNA-binding protein RAL 99.6 4.5E-15 1.5E-19 115.0 8.3 76 28-117 23-100 (110)
242 2hgn_A Heterogeneous nuclear r 99.6 7.9E-16 2.7E-20 123.7 4.0 81 150-233 44-124 (139)
243 1x4f_A Matrin 3; structural ge 99.6 4.2E-15 1.4E-19 114.4 7.8 78 150-233 23-103 (112)
244 2dnz_A Probable RNA-binding pr 99.6 8.2E-15 2.8E-19 110.3 9.1 77 30-118 3-86 (95)
245 2dit_A HIV TAT specific factor 99.6 1.8E-14 6.2E-19 111.9 11.3 99 274-379 11-111 (112)
246 4a8x_A RNA-binding protein wit 99.6 5.7E-15 1.9E-19 109.5 8.1 75 30-116 2-84 (88)
247 1x5s_A Cold-inducible RNA-bind 99.6 6.6E-15 2.3E-19 112.4 8.6 78 29-118 9-93 (102)
248 2dnp_A RNA-binding protein 14; 99.6 1.3E-14 4.4E-19 108.1 9.9 76 28-117 5-81 (90)
249 2dnh_A Bruno-like 5, RNA bindi 99.6 4.8E-15 1.6E-19 113.8 7.8 80 27-118 10-98 (105)
250 1sjr_A Polypyrimidine tract-bi 99.6 1.4E-14 4.9E-19 118.4 11.0 78 152-233 46-125 (164)
251 2fy1_A RNA-binding motif prote 99.6 9.6E-15 3.3E-19 114.2 9.6 78 29-118 4-87 (116)
252 2kvi_A Nuclear polyadenylated 99.6 6.1E-15 2.1E-19 111.3 8.2 75 151-233 9-84 (96)
253 3zzy_A Polypyrimidine tract-bi 99.6 1.6E-14 5.3E-19 113.9 10.8 79 150-233 26-107 (130)
254 1x5u_A Splicing factor 3B subu 99.6 8.3E-15 2.8E-19 112.5 9.1 80 27-118 10-96 (105)
255 1x5t_A Splicing factor 3B subu 99.6 5.2E-15 1.8E-19 111.6 7.8 80 30-118 3-87 (96)
256 2d9p_A Polyadenylate-binding p 99.6 3.8E-15 1.3E-19 114.0 7.0 80 27-118 10-94 (103)
257 2diu_A KIAA0430 protein; struc 99.6 1.2E-14 4.1E-19 106.2 9.2 72 154-235 11-87 (96)
258 2dgu_A Heterogeneous nuclear r 99.6 2.4E-14 8.1E-19 109.5 11.2 75 30-118 9-84 (103)
259 2cpd_A Apobec-1 stimulating pr 99.6 3.4E-14 1.2E-18 107.8 12.0 77 150-234 13-91 (99)
260 2dnm_A SRP46 splicing factor; 99.6 3.9E-15 1.3E-19 113.9 6.7 79 28-118 9-94 (103)
261 2cqb_A Peptidyl-prolyl CIS-tra 99.6 5E-15 1.7E-19 113.0 7.3 78 29-118 9-93 (102)
262 3ucg_A Polyadenylate-binding p 99.6 4.6E-15 1.6E-19 110.2 6.9 76 29-116 3-84 (89)
263 1x4h_A RNA-binding protein 28; 99.6 2.4E-14 8.1E-19 111.0 11.2 79 28-118 11-102 (111)
264 2cqd_A RNA-binding region cont 99.6 3E-14 1E-18 111.4 11.7 78 27-117 12-96 (116)
265 1x4b_A Heterogeneous nuclear r 99.6 1E-14 3.5E-19 114.1 9.0 80 27-118 22-107 (116)
266 2dgp_A Bruno-like 4, RNA bindi 99.6 1.4E-14 4.8E-19 111.4 9.6 80 27-118 8-97 (106)
267 2jrs_A RNA-binding protein 39; 99.6 5.5E-15 1.9E-19 114.0 7.2 79 27-117 21-106 (108)
268 1x5p_A Negative elongation fac 99.6 3.9E-14 1.3E-18 107.0 11.8 77 150-234 13-89 (97)
269 2la6_A RNA-binding protein FUS 99.6 5.1E-15 1.7E-19 112.4 6.8 86 27-114 8-98 (99)
270 2nlw_A Eukaryotic translation 99.6 9E-15 3.1E-19 112.3 8.3 79 28-118 11-101 (105)
271 2cq2_A Hypothetical protein LO 99.6 1.5E-14 5.1E-19 111.4 9.4 77 151-233 24-107 (114)
272 3egn_A RNA-binding protein 40; 99.6 1.7E-14 5.9E-19 117.2 10.4 81 150-233 43-131 (143)
273 2dgt_A RNA-binding protein 30; 99.6 1.4E-14 4.7E-19 108.4 9.0 78 27-118 5-83 (92)
274 2fc9_A NCL protein; structure 99.6 3.4E-15 1.2E-19 113.8 5.7 81 28-118 11-92 (101)
275 2dgv_A HnRNP M, heterogeneous 99.6 5.4E-15 1.8E-19 110.6 6.6 77 29-117 5-86 (92)
276 1u6f_A Tcubp1, RNA-binding pro 99.6 2.3E-14 8E-19 115.8 10.9 80 27-118 37-123 (139)
277 2jwn_A Embryonic polyadenylate 99.5 1E-14 3.5E-19 115.5 8.5 79 27-117 31-115 (124)
278 2j76_E EIF-4B, EIF4B, eukaryot 99.5 2.2E-15 7.6E-20 114.6 4.5 86 19-117 6-98 (100)
279 2kxn_B Transformer-2 protein h 99.5 6.4E-15 2.2E-19 117.4 7.2 79 27-117 41-126 (129)
280 1p27_B RNA-binding protein 8A; 99.5 6.7E-15 2.3E-19 113.2 6.9 77 28-116 19-102 (106)
281 2pe8_A Splicing factor 45; RRM 99.5 3.8E-14 1.3E-18 108.4 10.9 81 151-231 7-93 (105)
282 2cqh_A IGF-II mRNA-binding pro 99.5 4.6E-15 1.6E-19 111.3 5.7 77 29-117 5-83 (93)
283 2cpe_A RNA-binding protein EWS 99.5 9.8E-15 3.4E-19 113.6 7.7 89 26-118 9-104 (113)
284 2div_A TRNA selenocysteine ass 99.5 1E-14 3.6E-19 110.6 7.6 78 28-117 5-94 (99)
285 1nu4_A U1A RNA binding domain; 99.5 9.7E-15 3.3E-19 110.4 7.3 77 29-117 5-89 (97)
286 3ns6_A Eukaryotic translation 99.5 5.7E-15 1.9E-19 112.3 6.0 75 30-116 4-92 (100)
287 2dnl_A Cytoplasmic polyadenyla 99.5 1.6E-14 5.4E-19 112.6 8.6 75 150-227 6-83 (114)
288 2cqp_A RNA-binding protein 12; 99.5 7.3E-15 2.5E-19 111.3 6.6 83 28-116 11-94 (98)
289 2dhg_A TRNA selenocysteine ass 99.5 1.5E-14 5.3E-19 110.7 8.4 79 28-118 5-91 (104)
290 2e5i_A Heterogeneous nuclear r 99.5 4.5E-14 1.5E-18 110.8 11.1 75 153-233 26-103 (124)
291 2cq0_A Eukaryotic translation 99.5 7.1E-15 2.4E-19 112.4 6.3 80 27-118 10-96 (103)
292 2cq2_A Hypothetical protein LO 99.5 1.8E-14 6E-19 111.0 8.5 77 29-117 22-106 (114)
293 1x5p_A Negative elongation fac 99.5 3.4E-14 1.2E-18 107.4 10.0 76 28-117 11-87 (97)
294 2dis_A Unnamed protein product 99.5 5.1E-14 1.7E-18 108.8 11.2 79 29-118 5-93 (109)
295 1wg1_A KIAA1579 protein, homol 99.5 5.4E-15 1.8E-19 109.7 5.3 75 30-117 3-78 (88)
296 1oo0_B CG8781-PA, drosophila Y 99.5 1.4E-14 4.8E-19 112.2 7.8 78 27-116 21-105 (110)
297 2cpi_A CCR4-NOT transcription 99.5 8.6E-15 3E-19 113.6 6.5 80 27-118 10-102 (111)
298 3ulh_A THO complex subunit 4; 99.5 1.5E-14 5.1E-19 111.4 7.6 76 28-115 25-106 (107)
299 2hzc_A Splicing factor U2AF 65 99.5 2.6E-14 8.9E-19 105.6 8.6 71 151-228 5-86 (87)
300 2db1_A Heterogeneous nuclear r 99.5 5.3E-15 1.8E-19 116.0 5.1 82 27-117 12-98 (118)
301 1fjc_A Nucleolin RBD2, protein 99.5 9E-15 3.1E-19 110.3 6.2 80 27-117 11-91 (96)
302 2do0_A HnRNP M, heterogeneous 99.5 2.6E-14 9E-19 111.4 9.0 78 28-117 11-94 (114)
303 1wi8_A EIF-4B, eukaryotic tran 99.5 2.8E-14 9.6E-19 109.3 8.9 76 30-118 13-95 (104)
304 3n9u_C Cleavage and polyadenyl 99.5 2.2E-14 7.6E-19 118.0 8.8 75 31-117 54-137 (156)
305 2kvi_A Nuclear polyadenylated 99.5 8.8E-15 3E-19 110.4 5.8 76 28-117 6-83 (96)
306 1wel_A RNA-binding protein 12; 99.5 4.6E-15 1.6E-19 117.5 4.4 85 27-117 20-104 (124)
307 2ek1_A RNA-binding protein 12; 99.5 6.4E-15 2.2E-19 110.9 5.0 80 30-115 13-93 (95)
308 1wg5_A Heterogeneous nuclear r 99.5 1.7E-14 5.7E-19 110.6 7.4 78 28-117 11-94 (104)
309 1p1t_A Cleavage stimulation fa 99.5 7.8E-15 2.7E-19 112.4 5.5 80 28-119 4-90 (104)
310 3d2w_A TAR DNA-binding protein 99.5 5.4E-14 1.9E-18 104.3 9.5 73 151-232 10-84 (89)
311 2krb_A Eukaryotic translation 99.5 1.3E-14 4.4E-19 105.8 6.0 68 32-111 1-80 (81)
312 3p5t_L Cleavage and polyadenyl 99.5 7E-15 2.4E-19 109.5 4.6 76 33-117 2-83 (90)
313 2dgw_A Probable RNA-binding pr 99.5 2.1E-14 7.1E-19 107.2 7.1 77 28-117 6-87 (91)
314 2mss_A Protein (musashi1); RNA 99.5 1.4E-14 4.6E-19 104.0 5.7 69 34-114 1-75 (75)
315 2cqg_A TDP-43, TAR DNA-binding 99.5 5.4E-14 1.8E-18 107.5 9.4 79 27-118 10-94 (103)
316 2dnn_A RNA-binding protein 12; 99.5 2E-14 6.8E-19 110.7 6.9 74 30-116 14-92 (109)
317 2hgl_A HNRPF protein, heteroge 99.5 5.2E-15 1.8E-19 118.5 3.7 81 27-116 39-124 (136)
318 1x4e_A RNA binding motif, sing 99.5 3.7E-15 1.3E-19 109.8 2.6 75 29-115 2-83 (85)
319 1iqt_A AUF1, heterogeneous nuc 99.5 1.2E-14 4.1E-19 104.3 5.1 69 34-114 1-75 (75)
320 2e5g_A U6 snRNA-specific termi 99.5 4.4E-14 1.5E-18 106.0 8.3 77 29-117 5-82 (94)
321 3ex7_B RNA-binding protein 8A; 99.5 3E-14 1E-18 113.1 7.7 78 28-117 18-102 (126)
322 3beg_B Splicing factor, argini 99.5 2.6E-14 9E-19 111.5 7.1 75 151-232 15-94 (115)
323 2dng_A Eukaryotic translation 99.5 3.7E-14 1.3E-18 108.4 7.6 77 29-118 12-94 (103)
324 2dh8_A DAZ-associated protein 99.5 2E-14 7E-19 110.3 6.1 80 27-118 11-96 (105)
325 2kt5_A RNA and export factor-b 99.5 1.4E-13 4.8E-18 108.9 11.0 78 28-117 31-114 (124)
326 1h2v_Z 20 kDa nuclear CAP bind 99.5 4.3E-14 1.5E-18 116.6 8.3 79 28-118 35-120 (156)
327 2cpy_A RNA-binding protein 12; 99.5 1.4E-14 4.8E-19 112.9 4.9 80 28-118 11-95 (114)
328 2diu_A KIAA0430 protein; struc 99.5 9.3E-14 3.2E-18 101.5 8.6 72 31-118 7-85 (96)
329 3dxb_A Thioredoxin N-terminall 99.5 6.3E-14 2.2E-18 122.6 9.3 101 275-380 121-222 (222)
330 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 8.4E-14 2.9E-18 112.6 8.9 76 27-114 58-140 (140)
331 1x5o_A RNA binding motif, sing 99.5 7.2E-14 2.5E-18 108.9 8.0 80 25-116 18-111 (114)
332 2ki2_A SS-DNA binding protein 99.5 1.6E-14 5.6E-19 107.5 4.1 72 33-117 2-80 (90)
333 1wf0_A TDP-43, TAR DNA-binding 99.5 4E-14 1.4E-18 104.9 6.1 78 151-235 4-81 (88)
334 2voo_A Lupus LA protein; RNA-b 99.5 1.7E-13 5.7E-18 117.0 10.5 78 153-232 110-187 (193)
335 2fc8_A NCL protein; structure 99.5 1.6E-14 5.6E-19 110.2 3.6 80 27-118 10-93 (102)
336 3egn_A RNA-binding protein 40; 99.5 6.7E-14 2.3E-18 113.7 7.5 88 29-117 42-130 (143)
337 2e44_A Insulin-like growth fac 99.5 1.6E-13 5.6E-18 103.3 9.1 77 29-117 12-92 (96)
338 2lea_A Serine/arginine-rich sp 99.5 4.7E-14 1.6E-18 113.3 6.3 79 27-117 42-127 (135)
339 2bz2_A Negative elongation fac 99.5 2.1E-13 7.2E-18 107.2 9.5 76 150-233 37-112 (121)
340 2m2b_A RNA-binding protein 10; 99.5 6.6E-14 2.3E-18 111.9 6.4 88 27-119 18-110 (131)
341 1sjr_A Polypyrimidine tract-bi 99.5 2.3E-13 8E-18 111.3 9.7 77 30-118 44-125 (164)
342 1wez_A HnRNP H', FTP-3, hetero 99.5 2.3E-14 7.7E-19 109.3 3.4 79 29-117 12-92 (102)
343 1uaw_A Mouse-musashi-1; RNP-ty 99.5 2.8E-14 9.7E-19 102.8 3.5 72 33-114 1-76 (77)
344 3d2w_A TAR DNA-binding protein 99.5 1.4E-13 4.7E-18 102.1 7.3 78 27-117 6-84 (89)
345 3beg_B Splicing factor, argini 99.4 1.2E-13 4E-18 107.8 7.1 74 30-116 14-93 (115)
346 2lmi_A GRSF-1, G-rich sequence 99.4 1.4E-14 4.6E-19 111.7 1.2 81 27-116 6-91 (107)
347 2dit_A HIV TAT specific factor 99.4 1E-12 3.5E-17 101.9 11.6 81 149-233 12-103 (112)
348 2dha_A FLJ20171 protein; RRM d 99.4 3.4E-14 1.2E-18 111.7 3.2 84 28-116 19-104 (123)
349 3v4m_A Splicing factor U2AF 65 99.4 3.9E-13 1.3E-17 102.7 8.9 81 151-231 4-96 (105)
350 2bz2_A Negative elongation fac 99.4 1.2E-13 4.2E-18 108.5 6.3 76 28-117 35-111 (121)
351 2e5i_A Heterogeneous nuclear r 99.4 5.9E-13 2E-17 104.4 10.0 74 33-118 26-103 (124)
352 1rk8_A CG8781-PA, CG8781-PA pr 99.4 1.9E-13 6.5E-18 113.8 7.3 78 28-117 68-152 (165)
353 2voo_A Lupus LA protein; RNA-b 99.4 2.1E-13 7.2E-18 116.4 7.6 90 17-118 92-188 (193)
354 3zzy_A Polypyrimidine tract-bi 99.4 3.9E-13 1.3E-17 105.9 8.3 77 30-118 26-107 (130)
355 1wf0_A TDP-43, TAR DNA-binding 99.4 1.4E-13 4.8E-18 101.9 5.4 76 30-118 3-79 (88)
356 2lcw_A RNA-binding protein FUS 99.1 1.5E-14 5.1E-19 113.2 0.0 91 27-117 2-95 (116)
357 2hgm_A HNRPF protein, heteroge 99.4 1.4E-13 4.7E-18 108.5 5.1 75 28-115 38-119 (126)
358 2xs2_A Deleted in azoospermia- 99.4 6.4E-14 2.2E-18 106.9 3.1 77 28-117 5-86 (102)
359 3u1l_A PRE-mRNA-splicing facto 99.4 3.7E-13 1.3E-17 117.5 8.2 77 150-232 132-229 (240)
360 2f3j_A RNA and export factor b 99.4 4E-13 1.4E-17 112.9 7.8 76 29-116 85-166 (177)
361 3ue2_A Poly(U)-binding-splicin 99.4 7.8E-13 2.7E-17 103.0 8.5 79 152-230 20-107 (118)
362 3q2s_C Cleavage and polyadenyl 99.4 3E-13 1E-17 118.6 6.7 76 30-117 66-150 (229)
363 3u1l_A PRE-mRNA-splicing facto 99.4 3.7E-13 1.3E-17 117.5 7.1 78 28-117 130-229 (240)
364 2hgn_A Heterogeneous nuclear r 99.4 9.6E-14 3.3E-18 111.5 2.4 78 27-117 41-123 (139)
365 2dnl_A Cytoplasmic polyadenyla 99.4 9.1E-13 3.1E-17 102.6 7.4 69 29-112 5-83 (114)
366 1jmt_A Splicing factor U2AF 35 99.4 3.2E-13 1.1E-17 103.1 4.5 72 157-229 20-103 (104)
367 3pgw_S U1-70K; protein-RNA com 99.3 4.2E-12 1.4E-16 121.7 9.9 76 30-117 100-182 (437)
368 2d9o_A DNAJ (HSP40) homolog, s 99.3 5.7E-11 2E-15 89.5 11.4 76 152-234 10-92 (100)
369 3s6e_A RNA-binding protein 39; 99.2 8.1E-11 2.8E-15 90.9 9.8 75 152-230 7-91 (114)
370 3tht_A Alkylated DNA repair pr 99.2 6.4E-11 2.2E-15 108.9 9.6 75 150-230 16-97 (345)
371 2j8a_A Histone-lysine N-methyl 99.1 6.3E-11 2.2E-15 91.7 6.4 66 303-371 21-96 (136)
372 2dnr_A Synaptojanin-1; RRM dom 99.1 5.7E-10 1.9E-14 80.8 10.4 61 302-374 29-89 (91)
373 2d9o_A DNAJ (HSP40) homolog, s 99.1 8.3E-11 2.9E-15 88.6 6.1 60 303-372 32-91 (100)
374 3tht_A Alkylated DNA repair pr 99.1 1.1E-10 3.8E-15 107.3 8.1 75 28-114 14-96 (345)
375 2dnr_A Synaptojanin-1; RRM dom 98.9 4.6E-09 1.6E-13 76.0 8.4 70 154-232 9-86 (91)
376 1owx_A Lupus LA protein, SS-B, 98.9 5.1E-09 1.7E-13 80.9 9.1 72 152-229 18-93 (121)
377 1ufw_A Synaptojanin 2; RNP dom 98.8 7.9E-09 2.7E-13 75.1 6.8 57 302-370 38-94 (95)
378 3dxb_A Thioredoxin N-terminall 98.7 3.2E-08 1.1E-12 86.1 9.2 67 164-230 141-211 (222)
379 1owx_A Lupus LA protein, SS-B, 98.7 2.6E-08 8.9E-13 76.9 6.8 73 29-113 15-92 (121)
380 1ufw_A Synaptojanin 2; RNP dom 98.7 5.1E-08 1.7E-12 70.9 7.8 69 153-230 16-93 (95)
381 2l9w_A U4/U6 snRNA-associated- 98.5 9.2E-07 3.1E-11 65.5 10.5 72 152-229 21-97 (117)
382 2dhx_A Poly (ADP-ribose) polym 98.4 2.1E-06 7E-11 63.2 8.9 94 30-165 6-99 (104)
383 2l9w_A U4/U6 snRNA-associated- 98.3 2.8E-06 9.5E-11 63.0 8.9 78 29-113 18-96 (117)
384 1wey_A Calcipressin 1; structu 97.8 8.5E-05 2.9E-09 54.9 8.4 60 303-371 25-84 (104)
385 1wey_A Calcipressin 1; structu 97.8 9E-05 3.1E-09 54.8 7.7 77 150-232 3-84 (104)
386 2dhx_A Poly (ADP-ribose) polym 97.7 0.00046 1.6E-08 50.7 10.4 76 149-233 5-85 (104)
387 1whv_A Poly(A)-specific ribonu 97.4 0.00063 2.2E-08 49.3 7.9 54 153-214 16-69 (100)
388 1wwh_A Nucleoporin 35, nucleop 97.3 0.00088 3E-08 50.9 8.0 77 24-113 16-93 (119)
389 1uw4_A UPF3X; nonsense mediate 97.2 0.0017 5.7E-08 47.1 8.0 68 153-220 2-71 (91)
390 1wwh_A Nucleoporin 35, nucleop 97.2 0.0011 3.8E-08 50.3 7.1 71 152-230 24-95 (119)
391 3ctr_A Poly(A)-specific ribonu 97.1 0.00078 2.7E-08 49.0 5.4 54 154-215 7-60 (101)
392 1uw4_A UPF3X; nonsense mediate 96.8 0.0012 4.2E-08 47.9 4.2 62 33-106 2-72 (91)
393 1whv_A Poly(A)-specific ribonu 96.2 0.0055 1.9E-07 44.4 4.5 53 31-98 15-67 (100)
394 3pq1_A Poly(A) RNA polymerase; 95.9 0.0022 7.6E-08 60.9 1.6 68 27-107 48-116 (464)
395 3p3d_A Nucleoporin 53; structu 95.9 0.012 4.2E-07 45.2 5.3 76 153-230 8-97 (132)
396 2l08_A Regulator of nonsense t 95.7 0.011 3.9E-07 43.0 4.1 68 152-219 9-78 (97)
397 3p3d_A Nucleoporin 53; structu 95.6 0.0091 3.1E-07 46.0 3.7 82 32-114 7-96 (132)
398 3pq1_A Poly(A) RNA polymerase; 95.3 0.0098 3.3E-07 56.5 3.7 55 153-213 54-108 (464)
399 3ctr_A Poly(A)-specific ribonu 94.9 0.011 3.7E-07 43.1 1.9 52 32-98 6-57 (101)
400 2l08_A Regulator of nonsense t 94.9 0.012 4E-07 42.9 2.2 64 31-106 8-80 (97)
401 3d45_A Poly(A)-specific ribonu 88.1 1.4 4.8E-05 42.5 8.3 54 154-215 441-494 (507)
402 3d45_A Poly(A)-specific ribonu 71.1 5.8 0.0002 38.2 5.9 54 32-100 440-494 (507)
403 4eyt_A Telomerase associated p 69.6 26 0.00089 24.5 8.5 54 153-214 13-66 (129)
404 2g0c_A ATP-dependent RNA helic 52.8 19 0.00066 24.2 4.3 44 314-369 32-75 (76)
405 2g0c_A ATP-dependent RNA helic 50.4 53 0.0018 21.9 6.7 59 162-229 11-74 (76)
406 4e8u_A Putative uncharacterize 44.8 43 0.0015 26.8 5.7 51 153-206 13-74 (172)
407 4eyt_A Telomerase associated p 36.9 93 0.0032 21.7 5.6 68 29-112 9-77 (129)
408 3lpe_A Putative transcription 24.4 1.8E+02 0.0063 20.2 5.8 34 315-356 40-73 (92)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=1.7e-42 Score=317.12 Aligned_cols=248 Identities=23% Similarity=0.327 Sum_probs=215.0
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceec
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFE 105 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~ 105 (380)
.....+++|||+|||+++|+++|+++|++|| |..+.+.+++|||||+|.+.++|.+|+ .+++..+.
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-------------i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 83 (284)
T 3smz_A 17 RQFRNRRKILIRGLPGDVTNQEVHDLLSDYE-------------LKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLR 83 (284)
T ss_dssp HHHHCCCEEEEECCCTTCCHHHHHHHTTTSC-------------EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHHcC-------------CEEEEEecCCCEEEEEeCCHHHHHHHHHHcCCCeeC
Confidence 4557889999999999999999999999997 456667899999999999999999999 79999999
Q ss_pred CceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEe
Q 016936 106 GVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLV 185 (380)
Q Consensus 106 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~ 185 (380)
|++|+|.++.. ..+|||+|||+.+++++|+++|++||.|..+.++
T Consensus 84 g~~i~v~~~~~-----------------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~ 128 (284)
T 3smz_A 84 ERELSVQLQPT-----------------------------------DALLCVANLPPSLTQQQFEELVRPFGSLERCFLV 128 (284)
T ss_dssp TEECEEEECCC-----------------------------------SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE
T ss_pred CeEEEEEecCC-----------------------------------CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEE
Confidence 99999998432 2599999999999999999999999999999999
Q ss_pred eCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhcCccc
Q 016936 186 KDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNT 265 (380)
Q Consensus 186 ~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (380)
.++.+|.++|+|||+|.+.++|.+|+..++|..+.|+.|.|.++.......
T Consensus 129 ~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~~----------------------------- 179 (284)
T 3smz_A 129 YSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTP----------------------------- 179 (284)
T ss_dssp ECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCCT-----------------------------
T ss_pred eeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCCc-----------------------------
Confidence 998889999999999999999999999999999999999999986542211
Q ss_pred cCCCCCccCCccceEEEEeccCCc-ccCCChHHHHHHHHHHHHhhcccCCeEEEEecCCCCCCCCCCCccEEEEEeechh
Q 016936 266 LGGGMSLFGETLAKVLCLTEAITA-DALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAV 344 (380)
Q Consensus 266 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~L~~~f~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~ 344 (380)
......++.+.|.... .. +++|+++|++||.|.++.++++. ++ +..|+|||+|.+.+
T Consensus 180 --------~~~~~~~l~v~nlp~~~~~----------~~~l~~~f~~~G~i~~v~i~~~~-~g---~~~g~afV~f~~~~ 237 (284)
T 3smz_A 180 --------ALLHSRCLCVDRLPPGFND----------VDALCRALSAVHSPTFCQLACGQ-DG---QLKGFAVLEYETAE 237 (284)
T ss_dssp --------TTTSCSEEEEECCCTTCCC----------HHHHHHHTCSSSCCSEEEEEECS-SC---CEEEEEEEECSSHH
T ss_pred --------ccCCccEEEEecCCcccCC----------HHHHHHHhhCCCCeEEEEEEECC-CC---CcccEEEEEeCCHH
Confidence 1344566777774332 11 16999999999999999998875 33 23577899999999
Q ss_pred hHHHHHHHHcCcccCCeEEEEEecccccc
Q 016936 345 GCATAKNALSGRKFGGNTVNAFYYPEDKY 373 (380)
Q Consensus 345 ~A~~A~~~l~g~~i~gr~l~v~~~~~~~~ 373 (380)
+|.+|+..|||..|+|++|+|.|+....-
T Consensus 238 ~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 238 MAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred HHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 99999999999999999999999987653
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=1.8e-41 Score=311.63 Aligned_cols=248 Identities=16% Similarity=0.239 Sum_probs=199.7
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecC----CCcEEEEEeCCHHHHHHHHHcCCc
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH----EKKFAFVEMRTVEEASNAMALDGI 102 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~----~~g~afV~f~~~~~a~~ai~l~~~ 102 (380)
..+++.++|||+|||+++|+++|+++|++||. |.++.+.. ++|||||+|.+.++|.+|+.+++.
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~------------i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~ 103 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGP------------IIHVDVADSLKKNFRFARIEFARYDGALAAITKTHK 103 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSC------------EEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCc
Confidence 45688999999999999999999999999997 66666644 579999999999999999999999
Q ss_pred eecCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcC-CeeE
Q 016936 103 IFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFG-TLHG 181 (380)
Q Consensus 103 ~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~ 181 (380)
.+.|++|.|.++. .++|||+|||..+++++|+++|+.|| .|..
T Consensus 104 ~~~g~~i~v~~~~------------------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~ 147 (292)
T 2ghp_A 104 VVGQNEIIVSHLT------------------------------------ECTLWMTNFPPSYTQRNIRDLLQDINVVALS 147 (292)
T ss_dssp EETTEECEEEECC------------------------------------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCE
T ss_pred EeCCcEEEEEECC------------------------------------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEE
Confidence 9999999999842 25999999999999999999999999 9999
Q ss_pred EEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhc
Q 016936 182 FDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTS 261 (380)
Q Consensus 182 v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (380)
|.++.++. +.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++.+.......
T Consensus 148 v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~----------------------- 203 (292)
T 2ghp_A 148 IRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRT----------------------- 203 (292)
T ss_dssp EECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC-----------------------------
T ss_pred EEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccc-----------------------
Confidence 99999864 889999999999999999999999999999999999998765322111
Q ss_pred CccccCCCCCccCCccceEEEEeccC-C-cccCCChHHHHHHHHHHHHhhcccCCeEEEEecCCCC-CCCCCCCccEEEE
Q 016936 262 GMNTLGGGMSLFGETLAKVLCLTEAI-T-ADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQ-NGGETPGVGKVFL 338 (380)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~-~~~~~~~~~~~~~~~~L~~~f~~~G~I~~v~i~~~~~-~~~~~~g~g~afV 338 (380)
.....+..++.+.|.. + .++ ++|+++|++||.|.+|.++++.. ++. + .|+|||
T Consensus 204 ----------~~~~~~~~~l~v~nlp~~~~t~-----------~~l~~~F~~~G~v~~v~i~~~~~~tg~-~--~g~afV 259 (292)
T 2ghp_A 204 ----------DSATLEGREIMIRNLSTELLDE-----------NLLRESFEGFGSIEKINIPAGQKEHSF-N--NCCAFM 259 (292)
T ss_dssp -------------CCTTTEEEEEEECTTTCCH-----------HHHHHHHGGGSCEEEEECCSCCC---C-C--CEEEEE
T ss_pred ----------cccCCCCceEEEECCCcccCCH-----------HHHHHHHhccCCeeEEEEEecCCcCCC-C--ceEEEE
Confidence 0013455667676643 2 222 69999999999999999988764 132 3 467799
Q ss_pred EeechhhHHHHHHHHcCcccCCeEEEEEecccc
Q 016936 339 EYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 371 (380)
Q Consensus 339 ~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~~~~ 371 (380)
+|.+.++|.+|+ .|||..|+|++|+|.|+..+
T Consensus 260 ~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 260 VFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp EESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred EeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 999999999999 99999999999999999764
No 3
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=1e-32 Score=232.99 Aligned_cols=171 Identities=51% Similarity=0.909 Sum_probs=152.4
Q ss_pred cccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHHHcCCceecCceE
Q 016936 30 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAV 109 (380)
Q Consensus 30 ~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai~l~~~~i~g~~i 109 (380)
+++++|||+|||+++|+++|+++|++||.+.+... .+...|.++.+.+++|||||+|.+.++|.+|+.+++..+.|++|
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~-~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i 80 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQ-APGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSL 80 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCS-SSSCSEEEEEEETTTTEEEEEESSHHHHHHHGGGTTCEETTEEC
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhccccc-CCCCceeeeEecCCCCEEEEEeCCHHHHHHHHHhCCcEecCcee
Confidence 46899999999999999999999999988765211 11224899999999999999999999999999999999999999
Q ss_pred EEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC
Q 016936 110 RVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRD 189 (380)
Q Consensus 110 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~ 189 (380)
+|.++..+... ...++|||+|||..+++++|+++|++||.|..+.++.++.
T Consensus 81 ~v~~~~~~~~~-----------------------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~ 131 (172)
T 2g4b_A 81 KIRRPHDYQPL-----------------------------PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSA 131 (172)
T ss_dssp EEECCSSCCCC-----------------------------TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTT
T ss_pred eecCCcccCCC-----------------------------CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCC
Confidence 99986554211 1246999999999999999999999999999999999987
Q ss_pred CCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcc
Q 016936 190 TGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 230 (380)
Q Consensus 190 ~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~ 230 (380)
+|.++|+|||+|.+.++|.+|++.|||..+.|+.|.|.+|.
T Consensus 132 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 132 TGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 89999999999999999999999999999999999999873
No 4
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=4e-32 Score=234.69 Aligned_cols=194 Identities=46% Similarity=0.792 Sum_probs=159.0
Q ss_pred cccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHHHcCCceecCceE
Q 016936 30 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAV 109 (380)
Q Consensus 30 ~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai~l~~~~i~g~~i 109 (380)
+.+|+|||+|||+++++++|+++|++||.+.+... .+...|.++.+.+++|||||+|.+.++|.+|+.+++..|.|++|
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~-~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i 80 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQ-APGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSL 80 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCS-SSSCSEEEEEEETTTTEEEEEESCSHHHHHHGGGTTEEETTEEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhccccc-CCCCceEEeEecCCCCEEEEEeCCHHHHHHHHHhcCCEEcCceE
Confidence 46899999999999999999999999998876321 12235899999999999999999999999999999999999999
Q ss_pred EEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC
Q 016936 110 RVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRD 189 (380)
Q Consensus 110 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~ 189 (380)
+|.++..+.........+....+ ...........++|||+|||..+++++|+++|++||.|..+.+..++.
T Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~ 151 (198)
T 2yh0_A 81 KIRRPHDYQPLPGMSENPSVYVP---------GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSA 151 (198)
T ss_dssp EEECCCCCCCCCCSSSCSSCCCT---------TSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTT
T ss_pred EEeCCCCCCCCCCCcCCCcCCCC---------CCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCC
Confidence 99998765432211000000000 001112234568999999999999999999999999999999999987
Q ss_pred CCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 016936 190 TGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 233 (380)
Q Consensus 190 ~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~~ 233 (380)
++.++|||||+|.+.++|.+|++.|+|..+.|+.|+|.++.++.
T Consensus 152 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 152 TGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp TCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 89999999999999999999999999999999999999997754
No 5
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.98 E-value=6.3e-32 Score=236.35 Aligned_cols=164 Identities=21% Similarity=0.392 Sum_probs=140.8
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEe------cCCCcEEEEEeCCHHHHHHHH-Hc
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASNAM-AL 99 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~------~~~~g~afV~f~~~~~a~~ai-~l 99 (380)
.++.+.++|||+|||+++|+++|+++|++||. |.++.+ ++++|||||+|.+.++|.+|+ .+
T Consensus 10 ~p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~------------I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~ 77 (213)
T 4f02_A 10 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGP------------ILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 77 (213)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHGGGSC------------EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhhCC------------EEEEEEecccCCCCccccccceeCCHHHHHHHHHHh
Confidence 44567789999999999999999999999998 555654 345799999999999999999 79
Q ss_pred CCceecCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCe
Q 016936 100 DGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTL 179 (380)
Q Consensus 100 ~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i 179 (380)
++..+.|+.|++.++........ ....+|||+|||+.+++++|+++|++||.|
T Consensus 78 ~~~~~~g~~i~~~~~~~~~~~~~---------------------------~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i 130 (213)
T 4f02_A 78 NFDVIKGKPVRIMWSQRDPSLRK---------------------------SGVGNIFIKNLDKSIDNKALYDTFSAFGNI 130 (213)
T ss_dssp TTCEETTEECEEEECCCCTHHHH---------------------------HCTTEEEEESCCTTCCHHHHHHHHGGGSCE
T ss_pred hhhhcCCcccccccccccccccc---------------------------cccccceECCcccccHHHHHHHHHhhcCCe
Confidence 99999999999998655432211 112589999999999999999999999999
Q ss_pred eEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEccc
Q 016936 180 HGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 231 (380)
Q Consensus 180 ~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~ 231 (380)
..|++++++ +.++|||||+|.+.++|++|++.|||..+.|++|+|.++.+
T Consensus 131 ~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 131 LSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp EEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred EEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 999999984 56899999999999999999999999999999999999854
No 6
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.3e-31 Score=223.08 Aligned_cols=159 Identities=23% Similarity=0.427 Sum_probs=143.0
Q ss_pred ceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEe-----cCCCcEEEEEeCCHHHHHHHH-HcCCceecC
Q 016936 33 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI-----NHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 106 (380)
Q Consensus 33 ~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~-----~~~~g~afV~f~~~~~a~~ai-~l~~~~i~g 106 (380)
|+|||+|||+++|+++|+++|++||. |.++.+ ++++|||||+|.+.++|.+|+ .+++..+.|
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~------------i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 68 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGP------------IANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIEN 68 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSC------------EEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCC------------eEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCC
Confidence 78999999999999999999999997 666665 345699999999999999999 899999999
Q ss_pred ceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEee
Q 016936 107 VAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVK 186 (380)
Q Consensus 107 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~ 186 (380)
++|+|.++...... .....++|||+|||..+++++|+++|++||.|..+.++.
T Consensus 69 ~~i~v~~~~~~~~~---------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~ 121 (166)
T 3md3_A 69 NIVKINWAFQSQQS---------------------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMW 121 (166)
T ss_dssp EECEEEECCCCCCC---------------------------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEE
T ss_pred CeeEEEEcCCCCCC---------------------------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEe
Confidence 99999987554321 122346899999999999999999999999999999999
Q ss_pred CCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcc
Q 016936 187 DRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 230 (380)
Q Consensus 187 ~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~ 230 (380)
++.++.++|+|||+|.+.++|.+|+..|||..+.|+.|+|.++.
T Consensus 122 ~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 122 DMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp CTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred cCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 98889999999999999999999999999999999999999985
No 7
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=1e-30 Score=221.50 Aligned_cols=167 Identities=17% Similarity=0.356 Sum_probs=147.5
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHHHcCCceecC
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEG 106 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai~l~~~~i~g 106 (380)
....+.++|||+|||.++++++|+++|++||.+.+. .+.+...++++|||||+|.+.++|.+|+++++..+.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~-------~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g 80 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDL-------AVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFG 80 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-------CCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETT
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE-------EEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCC
Confidence 456778999999999999999999999999998752 3778888999999999999999999999999999999
Q ss_pred ceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEee
Q 016936 107 VAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVK 186 (380)
Q Consensus 107 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~ 186 (380)
++|+|.++...... .....++|||+|||..+++++|+++|++||.|..+
T Consensus 81 ~~l~v~~~~~~~~~---------------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~---- 129 (175)
T 1fje_B 81 NEIKLEKPKGRDSK---------------------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV---- 129 (175)
T ss_dssp EEEEEECCCCSSCS---------------------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----
T ss_pred eEEEEecCCCcccc---------------------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----
Confidence 99999997654211 01223699999999999999999999999988666
Q ss_pred CCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 016936 187 DRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 232 (380)
Q Consensus 187 ~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~ 232 (380)
..++.++|+|||+|.+.++|.+|+..|+|..+.|+.|+|.++.++
T Consensus 130 -~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 130 -SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp -CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred -cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 347899999999999999999999999999999999999999765
No 8
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=1.3e-30 Score=224.85 Aligned_cols=172 Identities=22% Similarity=0.417 Sum_probs=143.1
Q ss_pred hhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec------CCCcEEEEEeCCHHHHHHHHHcCC
Q 016936 28 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN------HEKKFAFVEMRTVEEASNAMALDG 101 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~------~~~g~afV~f~~~~~a~~ai~l~~ 101 (380)
...+.++|||+|||+++|+++|+++|++||. |.++.+. .++|||||+|.+.++|.+|+..++
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~------------i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~ 76 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGT------------LTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARP 76 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSC------------EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCC------------EEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCC
Confidence 4567899999999999999999999999998 5555543 357899999999999999998899
Q ss_pred ceecCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeE
Q 016936 102 IIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHG 181 (380)
Q Consensus 102 ~~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~ 181 (380)
..+.|+.|.|.++........ .......++|||+|||+.+++++|+++|++||.|..
T Consensus 77 ~~~~g~~l~v~~~~~~~~~~~-----------------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~ 133 (196)
T 1l3k_A 77 HKVDGRVVEPKRAVSREDSQR-----------------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133 (196)
T ss_dssp CEETTEECEEEECCC----------------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEE
T ss_pred CEECCEEeeeecccCcccccc-----------------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEE
Confidence 999999999998765432210 011223479999999999999999999999999999
Q ss_pred EEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccCCCC
Q 016936 182 FDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQ 235 (380)
Q Consensus 182 v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~~~~ 235 (380)
|.++.++.++.++|||||+|.+.++|.+|+.. ++..+.|+.|.|.++.++...
T Consensus 134 v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 134 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp EEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC-----
T ss_pred EEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHh
Confidence 99999988899999999999999999999986 899999999999999776443
No 9
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=2.2e-30 Score=217.31 Aligned_cols=158 Identities=22% Similarity=0.386 Sum_probs=140.0
Q ss_pred ccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecC------CCcEEEEEeCCHHHHHHHH-HcCCce
Q 016936 31 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH------EKKFAFVEMRTVEEASNAM-ALDGII 103 (380)
Q Consensus 31 ~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~------~~g~afV~f~~~~~a~~ai-~l~~~~ 103 (380)
.+++|||+|||+++++++|+++|++||. |.++.+.. ++|||||+|.+.++|.+|+ .+++..
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~------------i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~ 68 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGE------------IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLR 68 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSC------------EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCC------------eEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3689999999999999999999999997 55565543 3499999999999999999 699999
Q ss_pred ecCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEE
Q 016936 104 FEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFD 183 (380)
Q Consensus 104 i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~ 183 (380)
+.|++|+|.++...... ...++|||+|||..+++++|+++|++||.|..++
T Consensus 69 ~~g~~l~v~~~~~~~~~-----------------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~ 119 (167)
T 1fxl_A 69 LQTKTIKVSYARPSSAS-----------------------------IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSR 119 (167)
T ss_dssp ETTEECEEEECCCCCGG-----------------------------GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEE
T ss_pred cCCceEEEEecCCCccc-----------------------------CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEE
Confidence 99999999987643211 1236899999999999999999999999999999
Q ss_pred EeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeE--EEEEEc
Q 016936 184 LVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKT--LTVRRA 229 (380)
Q Consensus 184 l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~--i~v~~~ 229 (380)
++.++.+|.++|+|||+|.+.++|.+|++.|||..+.|+. |+|.||
T Consensus 120 i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 120 ILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 9999878999999999999999999999999999999965 888775
No 10
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.97 E-value=2.6e-30 Score=217.28 Aligned_cols=158 Identities=21% Similarity=0.358 Sum_probs=141.6
Q ss_pred ccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec------CCCcEEEEEeCCHHHHHHHH-HcCCce
Q 016936 31 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN------HEKKFAFVEMRTVEEASNAM-ALDGII 103 (380)
Q Consensus 31 ~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~------~~~g~afV~f~~~~~a~~ai-~l~~~~ 103 (380)
+.++|||+|||+++++++|+++|++||. |.++.+. .++|||||+|.+.++|.+|+ .+++..
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~------------i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~ 69 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGP------------INTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGIT 69 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSC------------EEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCC------------eeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCE
Confidence 5789999999999999999999999997 6666543 24689999999999999999 699999
Q ss_pred ecCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEE
Q 016936 104 FEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFD 183 (380)
Q Consensus 104 i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~ 183 (380)
+.|++|+|.++..... ....++|||+|||..+++++|+++|++||.|..+.
T Consensus 70 ~~g~~l~v~~~~~~~~-----------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~ 120 (168)
T 1b7f_A 70 VRNKRLKVSYARPGGE-----------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKN 120 (168)
T ss_dssp ETTEECEEEECCCCSS-----------------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEE
T ss_pred eCCcEEEEEecCCCcc-----------------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEE
Confidence 9999999998764321 12236999999999999999999999999999999
Q ss_pred EeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCC--eEEEEEEc
Q 016936 184 LVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD--KTLTVRRA 229 (380)
Q Consensus 184 l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g--~~i~v~~~ 229 (380)
+++++.++.++|+|||+|.+.++|.+|+..|+|..+.| ++|+|.+|
T Consensus 121 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 121 ILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 99998789999999999999999999999999999977 99999875
No 11
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=8e-31 Score=229.67 Aligned_cols=178 Identities=26% Similarity=0.455 Sum_probs=150.3
Q ss_pred hhhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec------CCCcEEEEEeCCHHHHHHHH-H
Q 016936 26 QQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN------HEKKFAFVEMRTVEEASNAM-A 98 (380)
Q Consensus 26 ~~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~------~~~g~afV~f~~~~~a~~ai-~ 98 (380)
.....+.++|||+|||.++++++|+++|++||. |.++.+. .++|||||+|.+.++|.+|+ .
T Consensus 22 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~------------i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 89 (216)
T 2qfj_A 22 QGALAIMSRVYVGSIYYELGEDTIRQAFAPFGP------------IKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 89 (216)
T ss_dssp HHHHHHHTEEEEECCCTTCCHHHHHHHHGGGSC------------EEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHH
T ss_pred CcccCcCCEEEEECCCCCCCHHHHHHHHHhCCC------------EEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHH
Confidence 356778999999999999999999999999997 6666653 46899999999999999999 6
Q ss_pred cCCceecCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCC
Q 016936 99 LDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGT 178 (380)
Q Consensus 99 l~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~ 178 (380)
+++..|.|++|+|.++.......... .. ........++|||+|||..+++++|+++|++||.
T Consensus 90 l~~~~~~g~~l~v~~~~~~~~~~~~~------------~~------~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~ 151 (216)
T 2qfj_A 90 MNSVMLGGRNIKVGRPSNIGQAQPII------------DQ------LAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGK 151 (216)
T ss_dssp HSSCCCC-CCCEEECCSCCGGGHHHH------------HH------HHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSC
T ss_pred ccCCeeCCeeEEEecCCCccccchhh------------hh------hhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCC
Confidence 99999999999998876543221100 00 0000123369999999999999999999999999
Q ss_pred eeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 016936 179 LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 233 (380)
Q Consensus 179 i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~~ 233 (380)
|..++++.++.+++++|||||+|.+.++|.+|+..|||..+.|+.|+|.++.+..
T Consensus 152 v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 152 IKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCS
T ss_pred eeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCC
Confidence 9999999998889999999999999999999999999999999999999987653
No 12
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.97 E-value=4.6e-30 Score=224.51 Aligned_cols=167 Identities=15% Similarity=0.219 Sum_probs=140.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcc
Q 016936 151 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 230 (380)
Q Consensus 151 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~ 230 (380)
..++|||+|||+++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++|++.+++..+.|+.|++.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 34699999999999999999999999999999999998899999999999999999999999999999999999999875
Q ss_pred cCCCCChhHHHHHHHHHHHHHHHHHHHhhhcCccccCCCCCccCCccceEEEEeccC-CcccCCChHHHHHHHHHHHHhh
Q 016936 231 ASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAI-TADALADDEEYEEILEDMREEC 309 (380)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~L~~~f 309 (380)
..... . ......+.+.|.. +.+ .++|+++|
T Consensus 94 ~~~~~-----~---------------------------------~~~~~~l~v~nl~~~~t-----------~~~l~~~F 124 (213)
T 4f02_A 94 RDPSL-----R---------------------------------KSGVGNIFIKNLDKSID-----------NKALYDTF 124 (213)
T ss_dssp CCTHH-----H---------------------------------HHCTTEEEEESCCTTCC-----------HHHHHHHH
T ss_pred ccccc-----c---------------------------------ccccccceECCcccccH-----------HHHHHHHH
Confidence 43100 0 1122345555532 222 26999999
Q ss_pred cccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCCeEEEEEecccc
Q 016936 310 GKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 371 (380)
Q Consensus 310 ~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~~~~ 371 (380)
++||.|.+|.++++... ..|+|||+|.+.++|.+|++.|||..|+|++|+|.|+...
T Consensus 125 ~~~G~i~~~~i~~d~~~-----~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 125 SAFGNILSCKVVCDENG-----SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp GGGSCEEEEEEEEETTE-----EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred hhcCCeEEEEeeccCCC-----CceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 99999999999886522 2477899999999999999999999999999999999764
No 13
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=1.7e-30 Score=218.29 Aligned_cols=160 Identities=22% Similarity=0.493 Sum_probs=141.1
Q ss_pred cccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec------CCCcEEEEEeCCHHHHHHHHHcCCce
Q 016936 30 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN------HEKKFAFVEMRTVEEASNAMALDGII 103 (380)
Q Consensus 30 ~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~------~~~g~afV~f~~~~~a~~ai~l~~~~ 103 (380)
+++++|||+|||+++|+++|+++|++||. |.++.+. .++|||||+|.+.++|.+|+. ++..
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~------------i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~ 67 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGT------------VTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK-TQHI 67 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCC------------EEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH-SCCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCC------------EEEEEEEECCCCCCccceEEEEEccHHHHHHHHh-cccc
Confidence 46899999999999999999999999997 6666653 457999999999999999996 3578
Q ss_pred ecCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEE
Q 016936 104 FEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFD 183 (380)
Q Consensus 104 i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~ 183 (380)
+.|+.|.+.++...... ...++|||+|||..+++++|+++|++||.|..++
T Consensus 68 ~~g~~i~v~~~~~~~~~-----------------------------~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~ 118 (167)
T 2cjk_A 68 LDGKVIDPKRAIPRDEQ-----------------------------DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQ 118 (167)
T ss_dssp ETTEECCCEECCCHHHH-----------------------------HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEE
T ss_pred cCCeEcccccccchhhc-----------------------------cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEE
Confidence 99999999876542211 1125899999999999999999999999999999
Q ss_pred EeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 016936 184 LVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 232 (380)
Q Consensus 184 l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~ 232 (380)
++.++.++.++|||||+|.+.++|.+|++ +++..+.|+.|.|.++.++
T Consensus 119 i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 119 LMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp CCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred EEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 99998889999999999999999999998 7999999999999999765
No 14
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.97 E-value=7.6e-30 Score=215.82 Aligned_cols=158 Identities=22% Similarity=0.354 Sum_probs=136.3
Q ss_pred ccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec--------CCCcEEEEEeCCHHHHHHHH-HcCC
Q 016936 31 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN--------HEKKFAFVEMRTVEEASNAM-ALDG 101 (380)
Q Consensus 31 ~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~--------~~~g~afV~f~~~~~a~~ai-~l~~ 101 (380)
++++|||+|||+++|+++|+++|++||. |.++.+. +++|||||+|.+.++|.+|+ .+++
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~------------i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~ 69 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGA------------VYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHN 69 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSC------------EEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCC------------EEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcC
Confidence 5789999999999999999999999998 5555442 46799999999999999999 7999
Q ss_pred ceec---CceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCC
Q 016936 102 IIFE---GVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGT 178 (380)
Q Consensus 102 ~~i~---g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~ 178 (380)
..+. ++++.+.++...... ....++|||+|||..+++++|+++|++||.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~ 121 (175)
T 3nmr_A 70 MKVLPGMHHPIQMKPADSEKNN----------------------------AVEDRKLFIGMISKKCTENDIRVMFSSFGQ 121 (175)
T ss_dssp TCCCTTCSSCCEEEECGGGCCS----------------------------CGGGSEEEEESCCTTCCHHHHHHHHGGGSC
T ss_pred cEEccCCccceEEccccccccc----------------------------cCCCCeEEEcCCCCcCCHHHHHHHHHhCCC
Confidence 8876 577888775432211 112368999999999999999999999999
Q ss_pred eeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeC---CeEEEEEEc
Q 016936 179 LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG---DKTLTVRRA 229 (380)
Q Consensus 179 i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~~i~v~~~ 229 (380)
|..+++++++ +|.++|||||+|.+.++|.+|+..|||..+. +++|.|.++
T Consensus 122 i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 122 IEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp EEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred EEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 9999999996 5999999999999999999999999998775 499999987
No 15
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9.6e-29 Score=207.09 Aligned_cols=166 Identities=17% Similarity=0.275 Sum_probs=141.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 016936 153 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 232 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~ 232 (380)
++|||+|||.++++++|+++|++||.|..+.++.++ .++++|||||+|.+.++|++|++.++|..+.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 589999999999999999999999999999999997 4889999999999999999999999999999999999998654
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHhhhcCccccCCCCCccCCccceEEEEeccCCcccCCChHHHHHHHHHHHHhhccc
Q 016936 233 SGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKY 312 (380)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~f~~~ 312 (380)
... ...+...+.+.|..... +.++|+++|++|
T Consensus 80 ~~~--------------------------------------~~~~~~~l~v~nl~~~~----------t~~~l~~~f~~~ 111 (166)
T 3md3_A 80 QQS--------------------------------------SSDDTFNLFVGDLNVNV----------DDETLRNAFKDF 111 (166)
T ss_dssp CCC--------------------------------------CCTTCEEEEEESCCTTC----------CHHHHHHHHTTS
T ss_pred CCC--------------------------------------CCCCCceEEECCCCCCC----------CHHHHHHHHhcc
Confidence 221 13455667777643221 126999999999
Q ss_pred CCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCCeEEEEEeccc
Q 016936 313 GTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPE 370 (380)
Q Consensus 313 G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~~~ 370 (380)
|.|.++.+..+..++. ..|+|||+|.+.++|.+|+..|||..++|++|+|.|+.+
T Consensus 112 G~i~~~~i~~~~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 112 PSYLSGHVMWDMQTGS---SRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp TTEEEEEEEECTTTCC---EEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCeeEEEEEecCCCCC---cceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 9999999998765543 357789999999999999999999999999999999863
No 16
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.96 E-value=1.1e-28 Score=207.37 Aligned_cols=164 Identities=23% Similarity=0.325 Sum_probs=141.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEccc
Q 016936 152 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 231 (380)
Q Consensus 152 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~ 231 (380)
.++|||+|||.++++++|+++|++||.|..+.+++++.+++++|||||+|.+.++|++|++.+++..+.|+.|.|.++.+
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 47999999999999999999999999999999999987899999999999999999999999999999999999999865
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHhhhcCccccCCCCCccCCccceEEEEeccCCcccCCChHHHHHHHHHHHHhhcc
Q 016936 232 SSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGK 311 (380)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~f~~ 311 (380)
... ......+.+.|..... +.++|+++|++
T Consensus 83 ~~~----------------------------------------~~~~~~l~v~nl~~~~----------t~~~l~~~f~~ 112 (168)
T 1b7f_A 83 GGE----------------------------------------SIKDTNLYVTNLPRTI----------TDDQLDTIFGK 112 (168)
T ss_dssp CSS----------------------------------------TTTTCEEEEESCCTTC----------CHHHHHHHHTS
T ss_pred Ccc----------------------------------------cCCCCCEEEeCCCCCC----------CHHHHHHhhhc
Confidence 321 2234566667643221 12699999999
Q ss_pred cCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCC--eEEEEEec
Q 016936 312 YGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGG--NTVNAFYY 368 (380)
Q Consensus 312 ~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~g--r~l~v~~~ 368 (380)
||.|.++.+.++..++. ..|+|||+|.+.++|.+|++.|||..+.| ++|+|.||
T Consensus 113 ~G~i~~~~i~~~~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 113 YGSIVQKNILRDKLTGR---PRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp SSCEEEEEEEECTTTCC---EEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCcEEEEEEEEcCCCCC---cceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 99999999988775543 34678999999999999999999999988 99999986
No 17
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.96 E-value=6.4e-29 Score=215.26 Aligned_cols=185 Identities=15% Similarity=0.126 Sum_probs=139.8
Q ss_pred ccceEEEcCCC-CcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecC-CCcEEEEEeCCHHHHHHHH-HcCCceecCc
Q 016936 31 HARRVYVGGLP-PLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH-EKKFAFVEMRTVEEASNAM-ALDGIIFEGV 107 (380)
Q Consensus 31 ~~~~v~V~nLp-~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~-~~g~afV~f~~~~~a~~ai-~l~~~~i~g~ 107 (380)
+.++|||+||| ..+++++|+++|++||. |.++++.+ ++|||||+|.+.++|++|+ .|||..+.|+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~------------v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 70 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGN------------VEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQ 70 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSC------------EEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCC------------eEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 57899999999 89999999999999998 77887765 4799999999999999999 7999999999
Q ss_pred eEEEecCCCCCccccccCCCCCCCCC-cccccc---cCC----CCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCe
Q 016936 108 AVRVRRPTDYNPTLAAALGPGQPSPN-LNLAAV---GLA----SGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTL 179 (380)
Q Consensus 108 ~i~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~----~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i 179 (380)
+|+|.++................... ...... ... ..........++|||+|||+.+++++|+++|++||.|
T Consensus 71 ~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v 150 (205)
T 3tyt_A 71 KMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVK 150 (205)
T ss_dssp ECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCC
T ss_pred eEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCc
Confidence 99999876543211000000000000 000000 000 0000112335789999999999999999999999999
Q ss_pred --eEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCe----EEEEEEc
Q 016936 180 --HGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDK----TLTVRRA 229 (380)
Q Consensus 180 --~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~----~i~v~~~ 229 (380)
..+++..+. +.++|+|||+|.+.++|.+|+..|||..+.|+ ++.|+++
T Consensus 151 ~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 151 RPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred ceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 899998774 56679999999999999999999999999876 5776654
No 18
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.96 E-value=2e-28 Score=205.36 Aligned_cols=163 Identities=27% Similarity=0.429 Sum_probs=139.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 016936 153 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 232 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~ 232 (380)
++|||+|||+.+++++|+++|+.||.|..+.+++++.+|.++|+|||+|.+.++|++|++.++|..+.|+.|+|.++.+.
T Consensus 3 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 82 (167)
T 1fxl_A 3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 82 (167)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCC
Confidence 69999999999999999999999999999999999888999999999999999999999999999999999999998643
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHhhhcCccccCCCCCccCCccceEEEEeccCCcccCCChHHHHHHHHHHHHhhccc
Q 016936 233 SGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKY 312 (380)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~f~~~ 312 (380)
.. ......+.+.|..... +.++|+++|++|
T Consensus 83 ~~----------------------------------------~~~~~~l~v~nl~~~~----------t~~~l~~~f~~~ 112 (167)
T 1fxl_A 83 SA----------------------------------------SIRDANLYVSGLPKTM----------TQKELEQLFSQY 112 (167)
T ss_dssp CG----------------------------------------GGTTCEEEEESCCTTC----------CHHHHHHHHGGG
T ss_pred cc----------------------------------------cCCCCcEEECCCCCcC----------CHHHHHHHHHhc
Confidence 11 2233456666643211 126999999999
Q ss_pred CCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCCeE--EEEEec
Q 016936 313 GTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNT--VNAFYY 368 (380)
Q Consensus 313 G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~--l~v~~~ 368 (380)
|.|.++.+..+..++. ..|+|||+|.+.++|.+|++.|||..++|+. |+|.||
T Consensus 113 G~i~~~~i~~~~~~g~---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 113 GRIITSRILVDQVTGV---SRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp SCEEEEEEEECTTTCC---EEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCEeEEEEEecCCCCC---ccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 9999999988765543 3477899999999999999999999999975 999886
No 19
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=6.5e-29 Score=224.00 Aligned_cols=159 Identities=21% Similarity=0.349 Sum_probs=144.7
Q ss_pred hhhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCcee
Q 016936 26 QQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIF 104 (380)
Q Consensus 26 ~~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i 104 (380)
+......++|||+|||+++|+++|+++|++||. |.++.+.+++|||||+|.+.++|.+|+ .+++..+
T Consensus 16 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~------------i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i 83 (261)
T 3sde_A 16 EKTYTQRCRLFVGNLPTDITEEDFKRLFERYGE------------PSEVFINRDRGFGFIRLESRTLAEIAKAELDGTIL 83 (261)
T ss_dssp CCSSCGGGEEEEESCCTTCCHHHHHHHTGGGCC------------CSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCC------------EEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEE
Confidence 345677899999999999999999999999997 777888899999999999999999999 6999999
Q ss_pred cCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEE
Q 016936 105 EGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDL 184 (380)
Q Consensus 105 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l 184 (380)
.|++|+|.++.. ..+|||+|||..+++++|+++|+.||.|..|.+
T Consensus 84 ~g~~l~v~~a~~-----------------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i 128 (261)
T 3sde_A 84 KSRPLRIRFATH-----------------------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVV 128 (261)
T ss_dssp TTEECEEEECCC-----------------------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred CCceeEeeeccc-----------------------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEe
Confidence 999999998543 258999999999999999999999999999999
Q ss_pred eeCCCCCCCceEEEEEEcChhHHHHHHHHhC-CCeeC---CeEEEEEEcccC
Q 016936 185 VKDRDTGNSKGYGFCVYQDPAVTDIACAALN-GLKMG---DKTLTVRRATAS 232 (380)
Q Consensus 185 ~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~-g~~~~---g~~i~v~~~~~~ 232 (380)
+.++ +|.++|||||+|.+.++|.+|+..|+ +..+. +++|.|.++...
T Consensus 129 ~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 129 VVDD-RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp EEET-TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred eeCC-CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 9994 79999999999999999999999995 55554 999999998764
No 20
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=2.8e-28 Score=215.52 Aligned_cols=186 Identities=19% Similarity=0.209 Sum_probs=144.0
Q ss_pred hcccceEEEcCCCC-cCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCC-CcEEEEEeCCHHHHHHHH-HcCCceec
Q 016936 29 TRHARRVYVGGLPP-LANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE-KKFAFVEMRTVEEASNAM-ALDGIIFE 105 (380)
Q Consensus 29 ~~~~~~v~V~nLp~-~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~-~g~afV~f~~~~~a~~ai-~l~~~~i~ 105 (380)
..++++|||+|||+ ++++++|+++|++||. |.++.+..+ +|||||+|.+.++|.+|+ .+++..+.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~------------i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~ 98 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGD------------VQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLH 98 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTC------------EEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCS
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCC------------eEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 45789999999999 9999999999999997 778887665 599999999999999999 69999999
Q ss_pred CceEEEecCCCCCccccccCCCCCCCCCcccccc---c----CCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcC-
Q 016936 106 GVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV---G----LASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFG- 177 (380)
Q Consensus 106 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G- 177 (380)
|++|+|.++................. ....... . ............++|||+|||..+++++|+++|++||
T Consensus 99 g~~l~v~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~ 177 (229)
T 2adc_A 99 GKPIRITLSKHQNVQLPREGQEDQGL-TKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGG 177 (229)
T ss_dssp SSBCEEECCSCCCCCCCCSSSSTTTT-EEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSC
T ss_pred CeEEEEEEecCccccCcccccccccc-ccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCC
Confidence 99999998765432211100000000 0000000 0 0000011123458999999999999999999999999
Q ss_pred CeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeC-CeEEEEEEcccC
Q 016936 178 TLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG-DKTLTVRRATAS 232 (380)
Q Consensus 178 ~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~-g~~i~v~~~~~~ 232 (380)
.|..+++..+ ++|+|||+|.+.++|.+|+..|+|..+. |+.|+|.++.+.
T Consensus 178 ~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 178 VVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp CEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred CeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 9999999653 3679999999999999999999999999 999999998753
No 21
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.96 E-value=2.2e-28 Score=223.13 Aligned_cols=187 Identities=20% Similarity=0.322 Sum_probs=142.6
Q ss_pred hhhcccceEEEcCCCCcCcHHHHH----HHHHHHHHhccCCCCCCCCeeEEEE---ecCCCcEEEEEeCCHHHHHHHH-H
Q 016936 27 QATRHARRVYVGGLPPLANEQAIA----TFFSQVMTAIGGNSAGPGDAVVNVY---INHEKKFAFVEMRTVEEASNAM-A 98 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~----~~f~~~G~i~~~~~~~~~~~i~~~~---~~~~~g~afV~f~~~~~a~~ai-~ 98 (380)
....+.++|||+|||+++++++|+ ++|++||. |.++. .++++|||||+|.+.++|.+|+ .
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~------------i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~ 71 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQ------------ILDILVSRSLKMRGQAFVIFKEVSSATNALRS 71 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCC------------eEEEEEcCCCCcceEEEEEECCHHHHHHHHHH
Confidence 456789999999999999999966 89999998 45555 4567899999999999999999 8
Q ss_pred cCCceecCceEEEecCCCCCccccccCCCCCCCC----------------Ccccc-------------------------
Q 016936 99 LDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSP----------------NLNLA------------------------- 137 (380)
Q Consensus 99 l~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~----------------~~~~~------------------------- 137 (380)
+++..|.|++|+|.++...........+...... .....
T Consensus 72 l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (282)
T 3pgw_A 72 MQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAP 151 (282)
T ss_pred hcCCeeCCcEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccc
Confidence 9999999999999987654421100000000000 00000
Q ss_pred --------------------cccCCC---------------------CCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhc
Q 016936 138 --------------------AVGLAS---------------------GAIGGAEGPDRVFVGGLPYYFTETQIKELLESF 176 (380)
Q Consensus 138 --------------------~~~~~~---------------------~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~ 176 (380)
..+... .........++|||+|||..+++++|+++|++|
T Consensus 152 ~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~ 231 (282)
T 3pgw_A 152 RIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQF 231 (282)
T ss_pred cccccCCCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhc
Confidence 000000 000122345789999999999999999999999
Q ss_pred CCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeC-CeEEEEEEcc
Q 016936 177 GTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG-DKTLTVRRAT 230 (380)
Q Consensus 177 G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~-g~~i~v~~~~ 230 (380)
|.|..|+++.++ +|+|||+|.+.++|.+|+..|||..+. |+.|+|.|++
T Consensus 232 G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 232 PGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 999999998653 589999999999999999999999999 9999999974
No 22
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=4.8e-28 Score=211.96 Aligned_cols=179 Identities=20% Similarity=0.348 Sum_probs=143.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 016936 153 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 232 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~ 232 (380)
++|||+|||.++++++|+++|+.||.|..|++++++.++.++|||||+|.+.++|++|++.|++..+.|+.|.|.++...
T Consensus 29 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~ 108 (216)
T 2qfj_A 29 SRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNI 108 (216)
T ss_dssp TEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCC
T ss_pred CEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCc
Confidence 69999999999999999999999999999999999878999999999999999999999999999999999999987543
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHhhhcCccccCCCCCccCCccceEEEEeccCCcccCCChHHHHHHHHHHHHhhccc
Q 016936 233 SGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKY 312 (380)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~f~~~ 312 (380)
..... .... .. . ......++.+.|..... +.++|+++|++|
T Consensus 109 ~~~~~-----~~~~------~~---~---------------~~~~~~~l~v~nlp~~~----------t~~~l~~~f~~~ 149 (216)
T 2qfj_A 109 GQAQP-----IIDQ------LA---E---------------EARAFNRIYVASVHQDL----------SDDDIKSVFEAF 149 (216)
T ss_dssp GGGHH-----HHHH------HH---H---------------HHTTSCEEEEECCCTTC----------CHHHHHHHHTTS
T ss_pred cccch-----hhhh------hh---c---------------ccCCCcEEEEeCCCCcC----------CHHHHHHHHhcc
Confidence 21110 0000 00 0 03345667777643221 126999999999
Q ss_pred CCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCCeEEEEEecccccc
Q 016936 313 GTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKY 373 (380)
Q Consensus 313 G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~~~~~~ 373 (380)
|.|.++.+.++..++. ..|+|||+|.+.++|.+|+..|||..|+|++|+|.|+.....
T Consensus 150 G~v~~v~i~~~~~~g~---~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 150 GKIKSATLARDPTTGK---HKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp SCEEEEEEEECTTTCC---EEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSS
T ss_pred CCeeEEEEEecCCCCC---cCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCC
Confidence 9999999998765543 347889999999999999999999999999999999987543
No 23
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.96 E-value=9.7e-28 Score=206.76 Aligned_cols=175 Identities=19% Similarity=0.294 Sum_probs=140.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEc
Q 016936 150 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 229 (380)
Q Consensus 150 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~ 229 (380)
...++|||+|||+++++++|+++|+.||.|..|.+++++.++.++|||||+|.+.++|++|++. ++..+.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecc
Confidence 3447999999999999999999999999999999999988899999999999999999999986 899999999999998
Q ss_pred ccCCCCChhHHHHHHHHHHHHHHHHHHHhhhcCccccCCCCCccCCccceEEEEeccCCcccCCChHHHHHHHHHHHHhh
Q 016936 230 TASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREEC 309 (380)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~f 309 (380)
........+ ........+.+.|..... +.++|+++|
T Consensus 90 ~~~~~~~~~----------------------------------~~~~~~~~l~V~nLp~~~----------t~~~l~~~F 125 (196)
T 1l3k_A 90 VSREDSQRP----------------------------------GAHLTVKKIFVGGIKEDT----------EEHHLRDYF 125 (196)
T ss_dssp CC---------------------------------------------CCSEEEEECCTTTC----------CHHHHHHHH
T ss_pred cCccccccc----------------------------------ccCCCcceEEEeCCCCCC----------CHHHHHHHH
Confidence 654221110 012344667777643211 126999999
Q ss_pred cccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCCeEEEEEecccccc
Q 016936 310 GKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKY 373 (380)
Q Consensus 310 ~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~~~~~~ 373 (380)
++||.|.+|.++.+..++. ..|+|||+|.+.++|.+|+.. +|..|+|+.|.|.|+..+.-
T Consensus 126 ~~~G~i~~v~i~~~~~~g~---~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~ 185 (196)
T 1l3k_A 126 EQYGKIEVIEIMTDRGSGK---KRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQE 185 (196)
T ss_dssp TTTSCEEEEEEEECTTTCC---EEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC----
T ss_pred hcCCCeEEEEEeecCCCCC---ccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhH
Confidence 9999999999998765543 357789999999999999987 89999999999999987543
No 24
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.96 E-value=1.5e-27 Score=201.61 Aligned_cols=165 Identities=19% Similarity=0.309 Sum_probs=137.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCC--CCceEEEEEEcChhHHHHHHHHhCCCeeC---CeEEEE
Q 016936 152 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTG--NSKGYGFCVYQDPAVTDIACAALNGLKMG---DKTLTV 226 (380)
Q Consensus 152 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~~i~v 226 (380)
.++|||+|||+++++++|+++|++||.|..|++++++.++ +++|||||+|.+.++|++|++.+++..+. ++.+.+
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~ 82 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQM 82 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEE
Confidence 3699999999999999999999999999999999998766 89999999999999999999999998775 678888
Q ss_pred EEcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhcCccccCCCCCccCCccceEEEEeccCCcccCCChHHHHHHHHHHH
Q 016936 227 RRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMR 306 (380)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~ 306 (380)
.++...... ......+.+.|..... +.++|+
T Consensus 83 ~~~~~~~~~---------------------------------------~~~~~~l~v~nl~~~~----------t~~~l~ 113 (175)
T 3nmr_A 83 KPADSEKNN---------------------------------------AVEDRKLFIGMISKKC----------TENDIR 113 (175)
T ss_dssp EECGGGCCS---------------------------------------CGGGSEEEEESCCTTC----------CHHHHH
T ss_pred ccccccccc---------------------------------------cCCCCeEEEcCCCCcC----------CHHHHH
Confidence 877543221 3345567777643211 126999
Q ss_pred HhhcccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccC---CeEEEEEecc
Q 016936 307 EECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFG---GNTVNAFYYP 369 (380)
Q Consensus 307 ~~f~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~---gr~l~v~~~~ 369 (380)
++|++||.|.++.++++.. + +..|+|||+|.+.++|.+|++.|||..+. |++|+|.|++
T Consensus 114 ~~F~~~G~i~~v~~~~~~~-g---~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 114 VMFSSFGQIEECRILRGPD-G---LSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHHGGGSCEEEEEEEECTT-S---CEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred HHHHhCCCEEEEEEEECCC-C---CEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 9999999999999988753 3 23577899999999999999999999876 4999999984
No 25
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.95 E-value=1.4e-27 Score=218.82 Aligned_cols=168 Identities=15% Similarity=0.352 Sum_probs=140.7
Q ss_pred cccceEEEcCCCCcCcHHHHHHHHHHHH-HhccCCCCCCCCeeEEEEe-----cCCCcEEEEEeCCHHHHHHHH-HcCCc
Q 016936 30 RHARRVYVGGLPPLANEQAIATFFSQVM-TAIGGNSAGPGDAVVNVYI-----NHEKKFAFVEMRTVEEASNAM-ALDGI 102 (380)
Q Consensus 30 ~~~~~v~V~nLp~~~t~~~l~~~f~~~G-~i~~~~~~~~~~~i~~~~~-----~~~~g~afV~f~~~~~a~~ai-~l~~~ 102 (380)
...++|||+|||+.+++++|+++|++|| . |..+.+ +.++|||||+|.+.++|.+|+ .+++.
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~------------i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 182 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVV------------ALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGL 182 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCC------------CCEEECC-------CCEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCC------------eEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 3689999999999999999999999999 7 444544 347899999999999999999 69999
Q ss_pred eecCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCC-CCHHHHHHHHHhcCCeeE
Q 016936 103 IFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYY-FTETQIKELLESFGTLHG 181 (380)
Q Consensus 103 ~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~ 181 (380)
.+.|++|+|.++......... .......++|||+|||.. +++++|+++|++||.|..
T Consensus 183 ~~~g~~l~v~~a~~~~~~~~~----------------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~ 240 (292)
T 2ghp_A 183 KIEGYTLVTKVSNPLEKSKRT----------------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEK 240 (292)
T ss_dssp EETTEECEEEECCCC-------------------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEE
T ss_pred EeCCcEEEEEECCCCcccccc----------------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeE
Confidence 999999999987654322110 011234479999999999 999999999999999999
Q ss_pred EEEeeCCC-CCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 016936 182 FDLVKDRD-TGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 232 (380)
Q Consensus 182 v~l~~~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~ 232 (380)
|++++++. ++.++|||||+|.+.++|.+|+ .|||..+.|+.|.|.++.++
T Consensus 241 v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 241 INIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp EECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred EEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 99999865 4999999999999999999999 99999999999999999764
No 26
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.95 E-value=8.6e-28 Score=207.61 Aligned_cols=184 Identities=19% Similarity=0.214 Sum_probs=142.0
Q ss_pred ccceEEEcCCCC-cCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCC-CcEEEEEeCCHHHHHHHH-HcCCceecCc
Q 016936 31 HARRVYVGGLPP-LANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE-KKFAFVEMRTVEEASNAM-ALDGIIFEGV 107 (380)
Q Consensus 31 ~~~~v~V~nLp~-~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~-~g~afV~f~~~~~a~~ai-~l~~~~i~g~ 107 (380)
.+++|||+|||+ ++++++|+++|++||. |.++.+..+ +|||||+|.+.++|.+|+ .+++..+.|+
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~------------i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~ 69 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGD------------VQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGK 69 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCC------------CSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCC------------EEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCe
Confidence 468999999999 9999999999999987 677776655 699999999999999999 6999999999
Q ss_pred eEEEecCCCCCccccccCCCCCCCCCcccccc---c----CCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcC-Ce
Q 016936 108 AVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV---G----LASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFG-TL 179 (380)
Q Consensus 108 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i 179 (380)
+|+|.++................ ........ . ............++|||+|||..+++++|+++|++|| .|
T Consensus 70 ~l~v~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v 148 (198)
T 1qm9_A 70 PIRITLSKHQNVQLPREGQEDQG-LTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVV 148 (198)
T ss_dssp CCEEEECCCCSCCCSSSSSSSSS-CEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCC
T ss_pred EEEEEEecCCCcCCCCcCCcccc-ccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCc
Confidence 99999876543221110000000 00000000 0 0000011123368999999999999999999999999 99
Q ss_pred eEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeC-CeEEEEEEcccC
Q 016936 180 HGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG-DKTLTVRRATAS 232 (380)
Q Consensus 180 ~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~-g~~i~v~~~~~~ 232 (380)
..+++..+ .+|+|||+|.+.++|.+|+..|+|..+. |+.|+|.++.+.
T Consensus 149 ~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 149 KGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp CEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred eEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 99999664 2689999999999999999999999999 999999998653
No 27
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.95 E-value=3e-27 Score=215.80 Aligned_cols=165 Identities=18% Similarity=0.231 Sum_probs=144.2
Q ss_pred cccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEe------cCCCcEEEEEeCCHHHHHHHH-HcCCc
Q 016936 30 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASNAM-ALDGI 102 (380)
Q Consensus 30 ~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~------~~~~g~afV~f~~~~~a~~ai-~l~~~ 102 (380)
...++|||+|||+.+++++|+++|++||. |..+.+ +.++|||||+|.+.++|.+|+ .+++.
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~------------i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~ 160 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGS------------LERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGK 160 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSC------------EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCC------------eeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 45689999999999999999999999998 454543 235789999999999999999 89999
Q ss_pred eecCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCC-CHHHHHHHHHhcCCeeE
Q 016936 103 IFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYF-TETQIKELLESFGTLHG 181 (380)
Q Consensus 103 ~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~-t~~~l~~~F~~~G~i~~ 181 (380)
.+.|++|.|.++....... .....++|||+|||..+ ++++|+++|+.||.|..
T Consensus 161 ~~~g~~i~v~~a~~~~~~~--------------------------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~ 214 (284)
T 3smz_A 161 PLGPRTLYVHWTDAGQLTP--------------------------ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTF 214 (284)
T ss_dssp EETTEECEEEECCGGGCCT--------------------------TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSE
T ss_pred EeCCcEEEEEECCCCCCCc--------------------------ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEE
Confidence 9999999999975432110 11234799999999995 99999999999999999
Q ss_pred EEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 016936 182 FDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 233 (380)
Q Consensus 182 v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~~ 233 (380)
++++.++ +|.++|+|||+|.+.++|.+|+..|+|..+.|++|+|.++.++.
T Consensus 215 v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 265 (284)
T 3smz_A 215 CQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGP 265 (284)
T ss_dssp EEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSS
T ss_pred EEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCC
Confidence 9999986 69999999999999999999999999999999999999997654
No 28
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.95 E-value=2.3e-27 Score=199.11 Aligned_cols=162 Identities=20% Similarity=0.347 Sum_probs=137.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 016936 153 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 232 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~ 232 (380)
++|||+|||+++++++|+++|++||.|..|++++++.+|+++|||||+|.+.++|++|+.. +..+.|+.|.+.++.+.
T Consensus 4 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~~~ 81 (167)
T 2cjk_A 4 CKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAIPR 81 (167)
T ss_dssp GEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECCCH
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccccch
Confidence 6999999999999999999999999999999999988899999999999999999999984 67899999999987532
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHhhhcCccccCCCCCccCCccceEEEEeccC-CcccCCChHHHHHHHHHHHHhhcc
Q 016936 233 SGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAI-TADALADDEEYEEILEDMREECGK 311 (380)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~L~~~f~~ 311 (380)
.. ..+...+.+.|.. +.+ .++|+++|++
T Consensus 82 -----~~-----------------------------------~~~~~~l~V~nlp~~~t-----------~~~l~~~F~~ 110 (167)
T 2cjk_A 82 -----DE-----------------------------------QDKTGKIFVGGIGPDVR-----------PKEFEEFFSQ 110 (167)
T ss_dssp -----HH-----------------------------------HHHCEEEEEEEECTTCC-----------HHHHHHHHHT
T ss_pred -----hh-----------------------------------ccCCCeEEECCCCCCCC-----------HHHHHHHHHh
Confidence 10 1123456666532 222 2699999999
Q ss_pred cCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCCeEEEEEecccc
Q 016936 312 YGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 371 (380)
Q Consensus 312 ~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~~~~ 371 (380)
||.|.++.+..+..++. + .|+|||+|.+.++|.+|++ |||..++|++|+|.|+.++
T Consensus 111 ~G~i~~~~i~~~~~~g~-~--~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 111 WGTIIDAQLMLDKDTGQ-S--RGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp TSCCSEEECCCSSSSST-T--SEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred CccEEEEEEEEcCCCCc-c--ceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 99999999998765543 3 4677999999999999998 8999999999999999764
No 29
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.95 E-value=4.1e-26 Score=208.09 Aligned_cols=198 Identities=16% Similarity=0.229 Sum_probs=138.9
Q ss_pred CCCEEEEcCCCCCCCHHHHH----HHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEE
Q 016936 151 GPDRVFVGGLPYYFTETQIK----ELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 226 (380)
Q Consensus 151 ~~~~l~V~nlp~~~t~~~l~----~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v 226 (380)
..++|||+|||+.+++++|+ ++|++||.|..|++.+ +++++|||||+|.+.++|++|++.|||..+.|+.|+|
T Consensus 8 ~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 34799999999999999966 8999999999999876 5889999999999999999999999999999999999
Q ss_pred EEcccCCCCChhHHHH--------HHHH--HHHHHHHHHHHhhhcC------cccc------------------------
Q 016936 227 RRATASSGQSKTEQES--------ILAQ--AQQHIAIQKMALQTSG------MNTL------------------------ 266 (380)
Q Consensus 227 ~~~~~~~~~~~~~~~~--------~~~~--~~~~~~~~~~~~~~~~------~~~~------------------------ 266 (380)
.++............. .... ................ ....
T Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (282)
T 3pgw_A 85 QYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYM 164 (282)
T ss_pred EEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCC
Confidence 9986654211100000 0000 0000000000000000 0000
Q ss_pred --------CCC-----------------------CCccCCccceEEEEeccCCcccCCChHHHHHHHHHHHHhhcccCCe
Q 016936 267 --------GGG-----------------------MSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTL 315 (380)
Q Consensus 267 --------~~~-----------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~f~~~G~I 315 (380)
.+. .......+.+++.+.|+.. ..+.++|+++|++||.|
T Consensus 165 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~----------~~~~~~l~~~F~~~G~i 234 (282)
T 3pgw_A 165 PPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPE----------ETNELMLSMLFNQFPGF 234 (282)
T ss_pred CCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCC----------cCCHHHHHHHHHhcCCe
Confidence 000 0001122345666666432 22337999999999999
Q ss_pred EEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccC-CeEEEEEecc
Q 016936 316 VNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFG-GNTVNAFYYP 369 (380)
Q Consensus 316 ~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~-gr~l~v~~~~ 369 (380)
.+|.+.++.+ |+|||+|.+.++|.+|++.|||+.|+ |+.|+|+|+.
T Consensus 235 ~~v~~~~~~~--------g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 235 KEVRLVPGRH--------DIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred EEEEEecCCC--------cEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 9999986542 58899999999999999999999999 9999999985
No 30
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.94 E-value=5.7e-26 Score=191.46 Aligned_cols=157 Identities=20% Similarity=0.304 Sum_probs=129.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhc----C-------CeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCC
Q 016936 153 DRVFVGGLPYYFTETQIKELLESF----G-------TLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD 221 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~~~F~~~----G-------~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 221 (380)
++|||+|||+++++++|+++|++| | .|..+.+. +++|||||+|.+.++|++|+ .+++..+.|
T Consensus 5 ~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~~g 77 (172)
T 2g4b_A 5 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (172)
T ss_dssp GEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred cEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEecC
Confidence 699999999999999999999999 6 66666553 44789999999999999999 799999999
Q ss_pred eEEEEEEcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhcCccccCCCCCccCCccceEEEEeccCCcccCCChHHHHHH
Q 016936 222 KTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEI 301 (380)
Q Consensus 222 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 301 (380)
+.|.|.++..... ......+.+.|..... +
T Consensus 78 ~~i~v~~~~~~~~----------------------------------------~~~~~~l~v~nlp~~~----------t 107 (172)
T 2g4b_A 78 QSLKIRRPHDYQP----------------------------------------LPGAHKLFIGGLPNYL----------N 107 (172)
T ss_dssp EECEEECCSSCCC----------------------------------------CTTTTCEEEECCCTTC----------C
T ss_pred ceeeecCCcccCC----------------------------------------CCCCCEEEEEcCCCcC----------C
Confidence 9999998754311 1224556666633211 1
Q ss_pred HHHHHHhhcccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCCeEEEEEecc
Q 016936 302 LEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYP 369 (380)
Q Consensus 302 ~~~L~~~f~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~~ 369 (380)
.++|+++|++||.|.++.+.++..++. ..|+|||+|.+.++|.+|++.|||..|+|++|+|.|+.
T Consensus 108 ~~~l~~~f~~~G~v~~v~i~~~~~~g~---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 108 DDQVKELLTSFGPLKAFNLVKDSATGL---SKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp HHHHHHHHHTTSCEEEEEEEECTTTCS---EEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHHHhcCCceEEEEEecCCCCC---cceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 269999999999999999998765543 34678999999999999999999999999999999974
No 31
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.94 E-value=1.6e-25 Score=193.07 Aligned_cols=181 Identities=18% Similarity=0.256 Sum_probs=137.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcC-----------CeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeC
Q 016936 152 PDRVFVGGLPYYFTETQIKELLESFG-----------TLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG 220 (380)
Q Consensus 152 ~~~l~V~nlp~~~t~~~l~~~F~~~G-----------~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 220 (380)
.++|||+|||+++++++|+++|++|| .|..+.+ ++++|||||+|.+.++|++|+ .|+|..+.
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEET
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 47999999999999999999999994 4544544 456899999999999999999 79999999
Q ss_pred CeEEEEEEcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhcCccccCCCCCccCCccceEEEEeccCCcccCCChHHHHH
Q 016936 221 DKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEE 300 (380)
Q Consensus 221 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 300 (380)
|+.|.|.++.......... .......++ ........+...+.+.|.....
T Consensus 77 g~~i~v~~~~~~~~~~~~~-------------------~~~~~~~~~-~~~~~~~~~~~~l~v~nl~~~~---------- 126 (198)
T 2yh0_A 77 GQSLKIRRPHDYQPLPGMS-------------------ENPSVYVPG-VVSTVVPDSAHKLFIGGLPNYL---------- 126 (198)
T ss_dssp TEEEEEECCCCCCCCCCSS-------------------SCSSCCCTT-SSCCCSSCCCCEEEEECCCTTC----------
T ss_pred CceEEEeCCCCCCCCCCCc-------------------CCCcCCCCC-CccCCCCCCCCEEEEeCCCCCC----------
Confidence 9999999986653222110 000001111 1111223556677777743211
Q ss_pred HHHHHHHhhcccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCCeEEEEEeccccc
Q 016936 301 ILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDK 372 (380)
Q Consensus 301 ~~~~L~~~f~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~~~~~ 372 (380)
+.++|+++|++||.|.++.+..+..++. ..|+|||+|.+.++|.+|++.|||..|+|++|+|.|+....
T Consensus 127 ~~~~l~~~f~~~G~v~~~~~~~~~~~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 127 NDDQVKELLTSFGPLKAFNLVKDSATGL---SKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp CHHHHHHHHHTBSCEEEEEEEECTTTCS---EEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CHHHHHHHHHHcCCccEEEEeecCCCCC---cceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 1269999999999999999998765543 34778999999999999999999999999999999997753
No 32
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.94 E-value=1.8e-26 Score=195.19 Aligned_cols=164 Identities=17% Similarity=0.306 Sum_probs=132.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEE
Q 016936 149 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 228 (380)
Q Consensus 149 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~ 228 (380)
....++|||+|||.++++++|+++|+.||.+..+ ++.+..++.++|||||+|.+.++|++|++ |++..+.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~-~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDL-AVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 87 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-CCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE-EEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEec
Confidence 3445799999999999999999999999987763 33333468899999999999999999995 999999999999999
Q ss_pred cccCCCCChhHHHHHHHHHHHHHHHHHHHhhhcCccccCCCCCccCCccceEEEEeccC-CcccCCChHHHHHHHHHHHH
Q 016936 229 ATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAI-TADALADDEEYEEILEDMRE 307 (380)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~L~~ 307 (380)
+...... .......+.+.|.. +.++ ++|++
T Consensus 88 ~~~~~~~--------------------------------------~~~~~~~l~v~nlp~~~t~-----------~~l~~ 118 (175)
T 1fje_B 88 PKGRDSK--------------------------------------KVRAARTLLAKNLSFNITE-----------DELKE 118 (175)
T ss_dssp CCCSSCS--------------------------------------TTGGGGEEEEESCCSSCCH-----------HHHHH
T ss_pred CCCcccc--------------------------------------ccccCCEEEEeCCCCCCCH-----------HHHHH
Confidence 8754221 13345667777743 2222 69999
Q ss_pred hhcccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCCeEEEEEecccc
Q 016936 308 ECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 371 (380)
Q Consensus 308 ~f~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~~~~ 371 (380)
+|++||.|..+ . .++ +..|+|||+|.+.++|.+|+..|||..|+|++|+|+|+.++
T Consensus 119 ~F~~~g~v~~~---~--~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 119 VFEDALEIRLV---S--QDG---KSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HCTTCSEEEEE---C--SSS---SCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred HHHhcCeEEEe---c--CCC---CCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 99999999877 1 122 22367799999999999999999999999999999999764
No 33
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.93 E-value=2.7e-25 Score=196.32 Aligned_cols=193 Identities=13% Similarity=0.128 Sum_probs=138.9
Q ss_pred CCCCEEEEcCCCC-CCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEE
Q 016936 150 EGPDRVFVGGLPY-YFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 228 (380)
Q Consensus 150 ~~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~ 228 (380)
...++|||+|||+ .+++++|+++|++||.|..|++.+++ +|||||+|.+.++|++|++.|++..+.|+.|.|.+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 3457999999999 99999999999999999999998874 78999999999999999999999999999999999
Q ss_pred cccCCCCChhHHHHHHHHHHHHHHHHHHHh-hhcCccccCCCCCccCCccceEEEEeccCCcccCCChHHHHHHHHHHHH
Q 016936 229 ATASSGQSKTEQESILAQAQQHIAIQKMAL-QTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMRE 307 (380)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~ 307 (380)
+................. ...... .......+..........+..++.+.|..... +.++|++
T Consensus 107 a~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~----------t~~~l~~ 170 (229)
T 2adc_A 107 SKHQNVQLPREGQEDQGL------TKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSV----------SEEDLKV 170 (229)
T ss_dssp CSCCCCCCCCSSSSTTTT------EEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTC----------CHHHHHH
T ss_pred ecCccccCcccccccccc------ccccccCcccccCCccccccccCCCCCCEEEEeCCCccC----------CHHHHHH
Confidence 876532211000000000 000000 00000000000001112345777777743221 1269999
Q ss_pred hhcccC-CeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccC-CeEEEEEecccc
Q 016936 308 ECGKYG-TLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFG-GNTVNAFYYPED 371 (380)
Q Consensus 308 ~f~~~G-~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~-gr~l~v~~~~~~ 371 (380)
+|++|| .|.++.+.+.. + |+|||+|.+.++|.+|++.|||..++ |++|+|.|+...
T Consensus 171 ~f~~~G~~i~~v~i~~~~------~--g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 171 LFSSNGGVVKGFKFFQKD------R--KMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp HHHTTSCCEEEEEECSSS------T--TCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred HHHHcCCCeeEEEEEECC------C--cEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 999999 99999996632 2 57799999999999999999999999 999999998753
No 34
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.93 E-value=3.6e-25 Score=191.69 Aligned_cols=181 Identities=14% Similarity=0.099 Sum_probs=128.0
Q ss_pred CCEEEEcCCC-CCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcc
Q 016936 152 PDRVFVGGLP-YYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 230 (380)
Q Consensus 152 ~~~l~V~nlp-~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~ 230 (380)
..+|||+||| +.+++++|+++|++||.|.+|+++++ ++|||||+|.+.++|++|++.|||..+.|++|+|.++.
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 3699999999 89999999999999999999999865 36899999999999999999999999999999999986
Q ss_pred cCCCCChhHHHHHHHHHHHHHHHHHHHhhhcC--ccccCC---CCCccCCccceEEEEeccC-CcccCCChHHHHHHHHH
Q 016936 231 ASSGQSKTEQESILAQAQQHIAIQKMALQTSG--MNTLGG---GMSLFGETLAKVLCLTEAI-TADALADDEEYEEILED 304 (380)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~ 304 (380)
.....+....... .. .. . .....+ .+.... ........+.+.+.+.|.. +.++ ++
T Consensus 79 ~~~~~p~~~~~~~-~~-----~~-~-~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~-----------~~ 139 (205)
T 3tyt_A 79 QPAIMPGQSYGLE-DG-----SC-S-YKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTE-----------EN 139 (205)
T ss_dssp CSCCCCCSCCBCT-TS-----CB-S-EEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCH-----------HH
T ss_pred CCccCCCcccccc-cC-----Cc-c-ccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCH-----------HH
Confidence 5432111000000 00 00 0 000000 000000 0000012345567777643 2222 69
Q ss_pred HHHhhcccCCe--EEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCCe
Q 016936 305 MREECGKYGTL--VNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGN 361 (380)
Q Consensus 305 L~~~f~~~G~I--~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr 361 (380)
|+++|++||.| .++.++.+. .+ . .|+|||+|.+.++|.+|+..|||..|.|+
T Consensus 140 L~~~F~~~G~v~~~~v~~~~~~-~~--~--~g~gfV~f~~~~~A~~Ai~~lng~~~~g~ 193 (205)
T 3tyt_A 140 FFEICDELGVKRPTSVKVFSGK-SE--R--SSSGLLEWDSKSDALETLGFLNHYQMKNP 193 (205)
T ss_dssp HHHHHHHHTCCCCSEEEECSCC-SS--S--SEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred HHHHHHhcCCcceEEEEEEcCC-CC--C--ceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence 99999999999 899998764 21 2 26779999999999999999999999998
No 35
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.93 E-value=1.8e-25 Score=192.99 Aligned_cols=187 Identities=13% Similarity=0.125 Sum_probs=138.2
Q ss_pred CCEEEEcCCCC-CCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcc
Q 016936 152 PDRVFVGGLPY-YFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 230 (380)
Q Consensus 152 ~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~ 230 (380)
.++|||+|||. .+++++|+++|++||.|..|++++++ +|||||+|.+.++|++|+..|+|..+.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 36999999999 99999999999999999999998764 6899999999999999999999999999999999987
Q ss_pred cCCCCChhHHHHHHHHHHHHHHHHHHHhhhc-----CccccCCCCCccCCccceEEEEeccCCcccCCChHHHHHHHHHH
Q 016936 231 ASSGQSKTEQESILAQAQQHIAIQKMALQTS-----GMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDM 305 (380)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L 305 (380)
.............. ......+ ....++.........+..++.+.|..... +.++|
T Consensus 78 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~----------~~~~l 137 (198)
T 1qm9_A 78 HQNVQLPREGQEDQ----------GLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSV----------SEEDL 137 (198)
T ss_dssp CCSCCCSSSSSSSS----------SCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTC----------CHHHH
T ss_pred CCCcCCCCcCCccc----------cccccccCCchhhccCccccccccCCCCccEEEEeCCCCCC----------CHHHH
Confidence 65322110000000 0000000 00000000111112346777777743221 12699
Q ss_pred HHhhcccC-CeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccC-CeEEEEEecccc
Q 016936 306 REECGKYG-TLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFG-GNTVNAFYYPED 371 (380)
Q Consensus 306 ~~~f~~~G-~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~-gr~l~v~~~~~~ 371 (380)
+++|++|| .|.++.+.++. .|+|||+|.+.++|.+|++.|||..++ |++|+|.|+...
T Consensus 138 ~~~f~~~G~~v~~v~i~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 138 KVLFSSNGGVVKGFKFFQKD--------RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp HHHHHHTTSCCCEEEESSTT--------SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred HHHHHHcCCCceEEEEEeCC--------CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 99999999 99999997643 257799999999999999999999999 999999998753
No 36
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.91 E-value=9.8e-24 Score=190.05 Aligned_cols=157 Identities=24% Similarity=0.324 Sum_probs=130.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEc
Q 016936 150 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 229 (380)
Q Consensus 150 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~ 229 (380)
...++|||+|||+++|+++|+++|++||.|..|.+.++ +|||||+|.+.++|.+|+..++|..+.|+.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 34469999999999999999999999999999998543 689999999999999999999999999999999997
Q ss_pred ccCCCCChhHHHHHHHHHHHHHHHHHHHhhhcCccccCCCCCccCCccceEEEEeccCCcccCCChHHHHHHHHHHHHhh
Q 016936 230 TASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREEC 309 (380)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~f 309 (380)
.+ ...+.+.|..... +.++|+++|
T Consensus 94 ~~----------------------------------------------~~~l~v~nl~~~~----------t~~~l~~~F 117 (261)
T 3sde_A 94 TH----------------------------------------------GAALTVKNLSPVV----------SNELLEQAF 117 (261)
T ss_dssp CC----------------------------------------------SSEEEEESCCTTC----------CHHHHHHHH
T ss_pred cc----------------------------------------------CCcccccCCCCCC----------CHHHHHHHH
Confidence 42 2346666532211 126999999
Q ss_pred cccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcC-cccC---CeEEEEEeccccc
Q 016936 310 GKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSG-RKFG---GNTVNAFYYPEDK 372 (380)
Q Consensus 310 ~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g-~~i~---gr~l~v~~~~~~~ 372 (380)
++||.|.+|.++.+. ++. ..|+|||+|.+.++|.+|+..||+ ..+. ||+|.|.++....
T Consensus 118 ~~~G~i~~v~i~~~~-~g~---~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 118 SQFGPVEKAVVVVDD-RGR---ATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp GGGSCEEEEEEEEET-TSC---EEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred HhcCCeEEEEeeeCC-CCC---cCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 999999999998874 432 357789999999999999999954 4554 9999999998754
No 37
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.87 E-value=2.4e-21 Score=160.93 Aligned_cols=140 Identities=17% Similarity=0.176 Sum_probs=106.0
Q ss_pred CCCcEEEEEeCCHHHHHHHH-HcCCceecCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEE
Q 016936 78 HEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVF 156 (380)
Q Consensus 78 ~~~g~afV~f~~~~~a~~ai-~l~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 156 (380)
+++|||||+|.+.++|++|+ .+++....+..+.+............ . .............+||
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~----~------------~~~~~~~~~~~~~~l~ 74 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEG----S------------HHHHHHMDVEGMTSLK 74 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECC----C------------CCSSCCCCCCBCCEEE
T ss_pred cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCcccccccccc----c------------cccccccCCCCCCEEE
Confidence 57899999999999999999 66653322223332211110000000 0 0000111123347999
Q ss_pred EcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccCC
Q 016936 157 VGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 233 (380)
Q Consensus 157 V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~~ 233 (380)
|+|||+.+++++|+++|++||.|..|+++.++.++.++|||||+|.+.++|++|+..|||..+.|+.|+|.++.+..
T Consensus 75 v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 75 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp EESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 99999999999999999999999999999998889999999999999999999999999999999999999998754
No 38
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.86 E-value=1.2e-21 Score=150.42 Aligned_cols=103 Identities=43% Similarity=0.825 Sum_probs=94.3
Q ss_pred CccceEEEEeccCCcccCCChHHHHHHHHHHHHhhcccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHc
Q 016936 275 ETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALS 354 (380)
Q Consensus 275 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~f~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~ 354 (380)
..++++++|.|++++.++.++.+|.+++++|+++|++||.|.+|.|+++..+. ..++.|+|||+|.+.++|.+|++.||
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~-~~~~~G~~fV~f~~~~~A~~Ai~~ln 80 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGV-EVPGCGKIFVEFTSVFDCQKAMQGLT 80 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTB-CCTTTTEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCC-CcCCcEEEEEEECCHHHHHHHHHHhC
Confidence 46899999999999999999999999999999999999999999998876432 13456788999999999999999999
Q ss_pred CcccCCeEEEEEeccccccccccC
Q 016936 355 GRKFGGNTVNAFYYPEDKYFNKDY 378 (380)
Q Consensus 355 g~~i~gr~l~v~~~~~~~~~~~~~ 378 (380)
|+.|+||.|+|+|+++++|+.++|
T Consensus 81 G~~f~GR~i~v~~~~~~~f~~~~~ 104 (105)
T 3v4m_A 81 GRKFANRVVVTKYCDPDSYHRRDF 104 (105)
T ss_dssp TCEETTEECEEEEECHHHHHTTCC
T ss_pred CCEeCCCEEEEEEeCHHHHhhccC
Confidence 999999999999999999999987
No 39
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.82 E-value=5.1e-20 Score=151.45 Aligned_cols=136 Identities=15% Similarity=0.158 Sum_probs=110.1
Q ss_pred CCCcEEEEEeCCHHHHHHHH-Hc-CCceecCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEE
Q 016936 78 HEKKFAFVEMRTVEEASNAM-AL-DGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRV 155 (380)
Q Consensus 78 ~~~g~afV~f~~~~~a~~ai-~l-~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 155 (380)
+-+|+++|+|.+.++|++|+ ++ ++..+.| +|.+.++............ .............++|
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~l 76 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHH-------------HHHHMHRDSCPLDCKV 76 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSS-------------CCCCSCSSSSTTSCEE
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccccc-------------ccccccccCCCCCCEE
Confidence 56799999999999999999 78 9999999 9999976543211110000 0001111223445799
Q ss_pred EEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 016936 156 FVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 232 (380)
Q Consensus 156 ~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~ 232 (380)
||+|||+.+++++|+++|++||.|..|+++++ ++|||||+|.+.++|.+|+..|||..+.|++|+|.++.++
T Consensus 77 ~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 77 YVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp EEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred EEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 99999999999999999999999999999876 5789999999999999999999999999999999998764
No 40
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.82 E-value=9.7e-20 Score=138.48 Aligned_cols=80 Identities=31% Similarity=0.542 Sum_probs=77.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEccc
Q 016936 152 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 231 (380)
Q Consensus 152 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~ 231 (380)
.++|||+|||+++|+++|+++|++||.|..|++++++.+|+++|||||+|.+.++|++|++.|||..+.|++|+|.++.|
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 36899999999999999999999999999999999988999999999999999999999999999999999999999865
No 41
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.82 E-value=1.8e-20 Score=146.49 Aligned_cols=101 Identities=31% Similarity=0.504 Sum_probs=88.4
Q ss_pred CccceEEEEeccCCcccCCChHHHHHHHHHHHHhhcccCCeEEEEecCCCCCC-CCCCCccEEEEEeechhhHHHHHHHH
Q 016936 275 ETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNG-GETPGVGKVFLEYYDAVGCATAKNAL 353 (380)
Q Consensus 275 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~f~~~G~I~~v~i~~~~~~~-~~~~g~g~afV~f~~~~~A~~A~~~l 353 (380)
..+++|++|.|+++++++.++ ++++|+++|++||.|.+|.|+++..+. ...++.|++||+|.+.++|.+|++.|
T Consensus 17 ~~ps~vl~L~Nm~~~~el~dd-----leedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~L 91 (118)
T 3ue2_A 17 KQESTVMVLRNMVDPKDIDDD-----LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQAL 91 (118)
T ss_dssp HHSCCEEEEESCSCGGGCCTT-----HHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHH-----HHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHH
Confidence 447899999999999887654 457999999999999999999876421 12345688899999999999999999
Q ss_pred cCcccCCeEEEEEeccccccccccCCC
Q 016936 354 SGRKFGGNTVNAFYYPEDKYFNKDYSA 380 (380)
Q Consensus 354 ~g~~i~gr~l~v~~~~~~~~~~~~~~~ 380 (380)
||++|+||.|+|+|+++++|..++|++
T Consensus 92 nGr~f~GR~i~v~~~~~~~f~~~~~~~ 118 (118)
T 3ue2_A 92 NGRWFAGRKVVAEVYDQERFDNSDLSA 118 (118)
T ss_dssp TTCEETTEECEEEEECHHHHHTTCCCC
T ss_pred CCCEECCcEEEEEEcChHhccccccCC
Confidence 999999999999999999999999986
No 42
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.78 E-value=3.7e-19 Score=133.12 Aligned_cols=82 Identities=20% Similarity=0.328 Sum_probs=76.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcC-CeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHh-CCCeeCCeEEEEEEcc
Q 016936 153 DRVFVGGLPYYFTETQIKELLESFG-TLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL-NGLKMGDKTLTVRRAT 230 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l-~g~~~~g~~i~v~~~~ 230 (380)
++|||+|||+++|+++|+++|++|| .|.+|++++++.++.++|||||+|.+.++|++|++.+ ++..+.|++|+|.++.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 6899999999999999999999999 7999999999989999999999999999999999976 4678999999999998
Q ss_pred cCCC
Q 016936 231 ASSG 234 (380)
Q Consensus 231 ~~~~ 234 (380)
++..
T Consensus 82 ~~~~ 85 (91)
T 2lxi_A 82 PKPK 85 (91)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7644
No 43
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.78 E-value=3.3e-19 Score=139.59 Aligned_cols=105 Identities=18% Similarity=0.237 Sum_probs=66.2
Q ss_pred ccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec----CCCcEEEEEeCCHHHHHHHH-HcCCceec
Q 016936 31 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN----HEKKFAFVEMRTVEEASNAM-ALDGIIFE 105 (380)
Q Consensus 31 ~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~----~~~g~afV~f~~~~~a~~ai-~l~~~~i~ 105 (380)
.+.+|||+|||+++++++|+++|++||. |.++++. .++|||||+|.+.++|++|+ .|++..|.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~------------v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~ 71 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGN------------ILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN 71 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSC------------EEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCC------------EEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEEC
Confidence 4678999999999999999999999998 5555543 34789999999999999999 79999999
Q ss_pred CceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHH
Q 016936 106 GVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQ 168 (380)
Q Consensus 106 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~ 168 (380)
|++|+|.++.......... ........+|||+|||+.+|++.
T Consensus 72 g~~i~V~~a~~~~~~~~~~---------------------~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 72 DRKVFVGRFKSRKEREAEL---------------------GARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp TEECEEEESSCCCC-------------------------------------------------
T ss_pred CEEEEEEECCCcccccccc---------------------ccccCCCCceEeCCCCCCccccc
Confidence 9999999876543211100 00112235799999999998763
No 44
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.78 E-value=2e-18 Score=133.72 Aligned_cols=80 Identities=11% Similarity=0.139 Sum_probs=77.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcc
Q 016936 151 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 230 (380)
Q Consensus 151 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~ 230 (380)
..++|||+|||+.+++++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++|++.|||..+.|+.|+|.++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 34799999999999999999999999999999999999899999999999999999999999999999999999999985
No 45
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.77 E-value=7.4e-19 Score=136.32 Aligned_cols=95 Identities=25% Similarity=0.419 Sum_probs=87.1
Q ss_pred CccceEEEEeccCCcccCCChHHHHHHHHHHHHhhcccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHc
Q 016936 275 ETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALS 354 (380)
Q Consensus 275 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~f~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~ 354 (380)
+.+++|++|.|+++++++.++.++.++++||+++|++||.|.+|.+.++. + .|+|||+|.+.++|.+|++.||
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~-----~--~G~~fV~f~~~e~A~~Ai~~ln 76 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS-----A--QGNVYVKCPSIAAAIAAVNALH 76 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC-----T--TCCEEEECSSHHHHHHHHHHHT
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC-----C--cEEEEEEECCHHHHHHHHHHhC
Confidence 57899999999999999999999999999999999999999999997754 2 3677999999999999999999
Q ss_pred CcccCCeEEEEEeccccccccc
Q 016936 355 GRKFGGNTVNAFYYPEDKYFNK 376 (380)
Q Consensus 355 g~~i~gr~l~v~~~~~~~~~~~ 376 (380)
|++|+||.|+|+|++++.|+++
T Consensus 77 G~~f~GR~i~v~~~~~~~y~~~ 98 (114)
T 3s6e_A 77 GRWFAGKMITAAYVPLPTYHNL 98 (114)
T ss_dssp TCEETTEECEEEEECHHHHHHH
T ss_pred CCEECCEEEEEEEEcHHHHHHh
Confidence 9999999999999999888653
No 46
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=131.11 Aligned_cols=82 Identities=20% Similarity=0.320 Sum_probs=75.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCC--eeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCC----eeCCeE
Q 016936 150 EGPDRVFVGGLPYYFTETQIKELLESFGT--LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGL----KMGDKT 223 (380)
Q Consensus 150 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~--i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~----~~~g~~ 223 (380)
....+|||+|||+.+|+++|+++|++||. +..|++++|+.+++++|||||+|.+.++|++|++.||+. .+.|++
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 44579999999999999999999999995 678999999989999999999999999999999999986 589999
Q ss_pred EEEEEccc
Q 016936 224 LTVRRATA 231 (380)
Q Consensus 224 i~v~~~~~ 231 (380)
|.|.+|+.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999864
No 47
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.76 E-value=1.7e-18 Score=132.68 Aligned_cols=99 Identities=29% Similarity=0.453 Sum_probs=84.6
Q ss_pred CccceEEEEeccCCcccCCChHHHHHHHHHHHHhhcccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHc
Q 016936 275 ETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALS 354 (380)
Q Consensus 275 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~f~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~ 354 (380)
..+++++.+.|+++++++.++ +.++|+++|++||.|.+|.+++++..+. +..|+|||+|.+.++|.+|++.||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd-----~~~dl~~~f~~~G~V~~v~i~~~~~~~~--~~~G~~FV~f~~~~~A~~Ai~~ln 77 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDED-----LEVETKEECEKYGKVGKCVIFEIPGAPD--DEAVRIFLEFERVESAIKAVVDLN 77 (105)
T ss_dssp GSCCSEEEEESSSCSCCC--------CHHHHHHHGGGGSCEEEEEEEECSSCCT--TTSEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCEEEEEcCCChHHhhHH-----HHHHHHHHHHhcCCEEEEEEecCCCCCC--CCcEEEEEEECCHHHHHHHHHHHC
Confidence 567899999999988776543 4579999999999999999988754332 234677999999999999999999
Q ss_pred CcccCCeEEEEEeccccccccccCCC
Q 016936 355 GRKFGGNTVNAFYYPEDKYFNKDYSA 380 (380)
Q Consensus 355 g~~i~gr~l~v~~~~~~~~~~~~~~~ 380 (380)
|+.|+||.|+|.|++++.|..++|++
T Consensus 78 G~~~~Gr~i~v~~a~~~~f~~~~~~~ 103 (105)
T 2pe8_A 78 GRYFGGRVVKACFYNLDKFRVLDLAE 103 (105)
T ss_dssp TCEETTEECEEEECCHHHHHTTCCCC
T ss_pred CCEECCcEEEEEEcCHHHhhhhhccc
Confidence 99999999999999999999999974
No 48
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.76 E-value=5.3e-18 Score=125.75 Aligned_cols=82 Identities=30% Similarity=0.455 Sum_probs=76.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcc
Q 016936 151 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 230 (380)
Q Consensus 151 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~ 230 (380)
..++|||+|||..+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++|++.|++..+.|+.|+|.++.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 34699999999999999999999999999999999998889999999999999999999999999999999999999986
Q ss_pred cC
Q 016936 231 AS 232 (380)
Q Consensus 231 ~~ 232 (380)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 54
No 49
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.7e-18 Score=128.87 Aligned_cols=88 Identities=28% Similarity=0.536 Sum_probs=81.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEE
Q 016936 148 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 227 (380)
Q Consensus 148 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~ 227 (380)
.....++|||+|||..+++++|+++|++||.|..|+++.++.++.++|||||+|.+.++|++|++.||+..+.|+.|+|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34556899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred EcccCCCC
Q 016936 228 RATASSGQ 235 (380)
Q Consensus 228 ~~~~~~~~ 235 (380)
++.++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 1x5s_A 88 QAGKSSDN 95 (102)
T ss_dssp EEECCCCC
T ss_pred ECCCCCCC
Confidence 99776433
No 50
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.75 E-value=9.7e-18 Score=123.16 Aligned_cols=80 Identities=21% Similarity=0.408 Sum_probs=77.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 016936 153 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 232 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~ 232 (380)
.+|||+|||..+++++|+++|++||.|..+.+++++.++.++|||||+|.+.++|++|+..|+|..+.|+.|+|.++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 48999999999999999999999999999999999888999999999999999999999999999999999999999765
No 51
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.75 E-value=6.4e-18 Score=132.24 Aligned_cols=80 Identities=23% Similarity=0.473 Sum_probs=74.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEccc
Q 016936 152 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 231 (380)
Q Consensus 152 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~ 231 (380)
..+|||+|||+.+++++|+++|++||.|..|++++++ +.++|||||+|.+.++|++|++.|++..+.|++|+|.++.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4689999999999999999999999999999999984 56899999999999999999999999999999999999876
Q ss_pred CC
Q 016936 232 SS 233 (380)
Q Consensus 232 ~~ 233 (380)
+.
T Consensus 83 ~~ 84 (115)
T 4f25_A 83 RK 84 (115)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 52
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1e-17 Score=126.47 Aligned_cols=85 Identities=33% Similarity=0.644 Sum_probs=79.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEc
Q 016936 150 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 229 (380)
Q Consensus 150 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~ 229 (380)
..+++|||+|||..+++++|+++|++||.|..|.++.++.+++++|||||+|.+.++|++|++.||+..+.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 34579999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 016936 230 TASSG 234 (380)
Q Consensus 230 ~~~~~ 234 (380)
.++..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 77643
No 53
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.75 E-value=1.6e-17 Score=130.05 Aligned_cols=88 Identities=30% Similarity=0.437 Sum_probs=81.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEE
Q 016936 148 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 227 (380)
Q Consensus 148 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~ 227 (380)
.....++|||+|||..+++++|+++|++||.|..|+++.++.++.++|||||+|.+.++|++|++.|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34556899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred EcccCCCC
Q 016936 228 RATASSGQ 235 (380)
Q Consensus 228 ~~~~~~~~ 235 (380)
++..+...
T Consensus 91 ~a~~~~~~ 98 (115)
T 2dgo_A 91 WATRKPPA 98 (115)
T ss_dssp ESSCCCCC
T ss_pred EccCCCCC
Confidence 99876443
No 54
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.4e-18 Score=128.96 Aligned_cols=87 Identities=18% Similarity=0.306 Sum_probs=80.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEE
Q 016936 149 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 228 (380)
Q Consensus 149 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~ 228 (380)
....++|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++|++.|++..+.|+.|+|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 44568999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred cccCCCC
Q 016936 229 ATASSGQ 235 (380)
Q Consensus 229 ~~~~~~~ 235 (380)
+.+....
T Consensus 89 a~~~~~~ 95 (102)
T 2cqb_A 89 AKPMRIK 95 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9876433
No 55
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=9.1e-18 Score=126.43 Aligned_cols=82 Identities=23% Similarity=0.448 Sum_probs=77.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEE
Q 016936 149 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 228 (380)
Q Consensus 149 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~ 228 (380)
....++|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++|++.||+..+.|++|+|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 34557999999999999999999999999999999999988899999999999999999999999999999999999998
Q ss_pred cc
Q 016936 229 AT 230 (380)
Q Consensus 229 ~~ 230 (380)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 56
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.3e-17 Score=126.90 Aligned_cols=85 Identities=26% Similarity=0.431 Sum_probs=79.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEc
Q 016936 150 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 229 (380)
Q Consensus 150 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~ 229 (380)
...++|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++|++.|++..+.|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34579999999999999999999999999999999999878999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 016936 230 TASSG 234 (380)
Q Consensus 230 ~~~~~ 234 (380)
.++..
T Consensus 86 ~~~~~ 90 (99)
T 1whw_A 86 TIKKE 90 (99)
T ss_dssp CCCST
T ss_pred CCCcc
Confidence 87643
No 57
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=126.05 Aligned_cols=83 Identities=20% Similarity=0.418 Sum_probs=77.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEE
Q 016936 149 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 228 (380)
Q Consensus 149 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~ 228 (380)
....++|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++|++.|++..+.|++|+|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34457999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ccc
Q 016936 229 ATA 231 (380)
Q Consensus 229 ~~~ 231 (380)
+.+
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 853
No 58
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1e-17 Score=128.39 Aligned_cols=85 Identities=20% Similarity=0.382 Sum_probs=79.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEE
Q 016936 149 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 228 (380)
Q Consensus 149 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~ 228 (380)
....++|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++|++.||+..+.|+.|+|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34558999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred cccCC
Q 016936 229 ATASS 233 (380)
Q Consensus 229 ~~~~~ 233 (380)
+....
T Consensus 90 a~~~~ 94 (103)
T 2dnm_A 90 ARYGR 94 (103)
T ss_dssp CSSCC
T ss_pred CCcCC
Confidence 97654
No 59
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-17 Score=128.29 Aligned_cols=86 Identities=29% Similarity=0.436 Sum_probs=80.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEE
Q 016936 149 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 228 (380)
Q Consensus 149 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~ 228 (380)
....++|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++|+..|++..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 44557999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred cccCCC
Q 016936 229 ATASSG 234 (380)
Q Consensus 229 ~~~~~~ 234 (380)
+.++..
T Consensus 92 a~~~~~ 97 (103)
T 2cq0_A 92 AKPSTN 97 (103)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 977643
No 60
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.74 E-value=1e-17 Score=123.64 Aligned_cols=80 Identities=19% Similarity=0.341 Sum_probs=76.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcc
Q 016936 151 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 230 (380)
Q Consensus 151 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~ 230 (380)
..++|||+|||..+++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.|||..+.|+.|+|++++
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 44799999999999999999999999999999999998889999999999999999999999999999999999999873
No 61
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-17 Score=126.06 Aligned_cols=85 Identities=29% Similarity=0.518 Sum_probs=79.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEE-EEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEc
Q 016936 151 GPDRVFVGGLPYYFTETQIKELLESFGTLHGF-DLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 229 (380)
Q Consensus 151 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v-~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~ 229 (380)
..++|||+|||..+++++|+++|++||.|..+ +++.++.++.++|||||+|.+.++|++|+..|++..+.|+.|+|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 44799999999999999999999999999999 99999888999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 016936 230 TASSGQ 235 (380)
Q Consensus 230 ~~~~~~ 235 (380)
.++...
T Consensus 84 ~~~~~~ 89 (96)
T 1x5t_A 84 FKKDSK 89 (96)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 776433
No 62
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.9e-17 Score=125.90 Aligned_cols=85 Identities=25% Similarity=0.537 Sum_probs=79.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEc
Q 016936 150 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 229 (380)
Q Consensus 150 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~ 229 (380)
...++|||+|||..+++++|+++|++||.|..|.++.++.+++++|||||+|.+.++|++|++ +++..+.|+.|+|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 345799999999999999999999999999999999998889999999999999999999999 8999999999999999
Q ss_pred ccCCCC
Q 016936 230 TASSGQ 235 (380)
Q Consensus 230 ~~~~~~ 235 (380)
.++...
T Consensus 87 ~~~~~~ 92 (99)
T 2dgs_A 87 EPRDSK 92 (99)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 876443
No 63
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.74 E-value=1.7e-17 Score=127.93 Aligned_cols=86 Identities=29% Similarity=0.463 Sum_probs=79.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCee---CCeEEE
Q 016936 149 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKM---GDKTLT 225 (380)
Q Consensus 149 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~~i~ 225 (380)
....++|||+|||..+++++|+++|++||.|..|+++.++.+++++|||||+|.+.++|++|++.|++..+ .|+.|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 34457999999999999999999999999999999999988899999999999999999999999999987 899999
Q ss_pred EEEcccCCC
Q 016936 226 VRRATASSG 234 (380)
Q Consensus 226 v~~~~~~~~ 234 (380)
|.++.....
T Consensus 90 v~~a~~~~~ 98 (106)
T 2dgp_A 90 VKPADSESR 98 (106)
T ss_dssp EEECCCCSC
T ss_pred EEECCcccc
Confidence 999977643
No 64
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.3e-17 Score=126.91 Aligned_cols=86 Identities=29% Similarity=0.436 Sum_probs=80.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEE
Q 016936 149 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 228 (380)
Q Consensus 149 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~ 228 (380)
....++|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++|++.|++..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34558999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred cccCCC
Q 016936 229 ATASSG 234 (380)
Q Consensus 229 ~~~~~~ 234 (380)
+.+...
T Consensus 92 a~~~~~ 97 (105)
T 1x5u_A 92 ASAHNK 97 (105)
T ss_dssp TTTTSC
T ss_pred CCCCCc
Confidence 977643
No 65
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.73 E-value=2.9e-18 Score=128.07 Aligned_cols=80 Identities=18% Similarity=0.342 Sum_probs=72.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcC--CeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcc
Q 016936 153 DRVFVGGLPYYFTETQIKELLESFG--TLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 230 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~ 230 (380)
.+|||+|||+++++++|+++|++|| .|.+++++.++.+|+++|||||+|.+.++|++|++.|||..+.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999998899999999999999999999999999999999999999987
Q ss_pred cC
Q 016936 231 AS 232 (380)
Q Consensus 231 ~~ 232 (380)
+.
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 65
No 66
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.73 E-value=2.2e-17 Score=124.86 Aligned_cols=81 Identities=32% Similarity=0.556 Sum_probs=77.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 016936 153 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 232 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~ 232 (380)
++|||+|||..+++++|+++|++||.|..|+++.++.++.++|||||+|.+.++|++|++.|+|..+.|+.|+|.++.++
T Consensus 3 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 82 (96)
T 2x1f_A 3 RVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNS 82 (96)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred cEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCC
Confidence 69999999999999999999999999999999999888999999999999999999999999999999999999999775
Q ss_pred C
Q 016936 233 S 233 (380)
Q Consensus 233 ~ 233 (380)
.
T Consensus 83 ~ 83 (96)
T 2x1f_A 83 D 83 (96)
T ss_dssp S
T ss_pred C
Confidence 4
No 67
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=126.51 Aligned_cols=84 Identities=24% Similarity=0.396 Sum_probs=79.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCee-EEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeE----
Q 016936 149 AEGPDRVFVGGLPYYFTETQIKELLESFGTLH-GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKT---- 223 (380)
Q Consensus 149 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~---- 223 (380)
....++|||+|||..+++++|+++|++||.|. .|++++++.++.++|||||+|.+.++|++|++.||+..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 44558999999999999999999999999999 9999999888999999999999999999999999999999999
Q ss_pred EEEEEcccC
Q 016936 224 LTVRRATAS 232 (380)
Q Consensus 224 i~v~~~~~~ 232 (380)
|+|.++.+.
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999998764
No 68
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=4.1e-17 Score=124.34 Aligned_cols=83 Identities=22% Similarity=0.542 Sum_probs=78.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEc
Q 016936 150 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 229 (380)
Q Consensus 150 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~ 229 (380)
...++|||+|||..+++++|+++|++||.|..|+++.++ +++++|||||+|.+.++|++|++.|++..+.|+.|+|.++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 345799999999999999999999999999999999997 7999999999999999999999999999999999999999
Q ss_pred ccCC
Q 016936 230 TASS 233 (380)
Q Consensus 230 ~~~~ 233 (380)
.++.
T Consensus 94 ~~~~ 97 (100)
T 2do4_A 94 NSGP 97 (100)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7654
No 69
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=3e-17 Score=127.62 Aligned_cols=87 Identities=28% Similarity=0.410 Sum_probs=80.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhC------CCeeCCe
Q 016936 149 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALN------GLKMGDK 222 (380)
Q Consensus 149 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~------g~~~~g~ 222 (380)
....++|||+|||+.+++++|+++|++||.|..|+++.++.++.++|||||+|.+.++|++|++.++ +..+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 3455799999999999999999999999999999999998889999999999999999999999999 9999999
Q ss_pred EEEEEEcccCCCC
Q 016936 223 TLTVRRATASSGQ 235 (380)
Q Consensus 223 ~i~v~~~~~~~~~ 235 (380)
.|+|.++.++...
T Consensus 92 ~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 92 QLKVDLAVTRDEA 104 (111)
T ss_dssp EEEEECCCCCCCC
T ss_pred EEEEEECCCCccC
Confidence 9999999876443
No 70
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.73 E-value=2.9e-17 Score=128.55 Aligned_cols=86 Identities=24% Similarity=0.475 Sum_probs=80.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEc
Q 016936 150 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 229 (380)
Q Consensus 150 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~ 229 (380)
...++|||+|||.++++++|+++|++||.|..|+++.++.+++++|||||+|.+.++|++|++.||+..+.|+.|+|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 34479999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 016936 230 TASSGQ 235 (380)
Q Consensus 230 ~~~~~~ 235 (380)
.++...
T Consensus 103 ~~~~~~ 108 (115)
T 2cpz_A 103 RSKNDS 108 (115)
T ss_dssp CCSCCC
T ss_pred CCCCcC
Confidence 876543
No 71
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.73 E-value=1.9e-17 Score=127.99 Aligned_cols=85 Identities=34% Similarity=0.711 Sum_probs=79.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEE
Q 016936 148 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 227 (380)
Q Consensus 148 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~ 227 (380)
+...+++|||+|||..+++++|+++|++||.|..|.++.++.+++++|||||+|.+.++|++|++.++|..+.|+.|+|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34556899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred EcccC
Q 016936 228 RATAS 232 (380)
Q Consensus 228 ~~~~~ 232 (380)
++.++
T Consensus 102 ~a~~k 106 (108)
T 2jrs_A 102 HVTER 106 (108)
T ss_dssp CSCSS
T ss_pred EcccC
Confidence 98765
No 72
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.73 E-value=2.2e-17 Score=124.62 Aligned_cols=80 Identities=31% Similarity=0.553 Sum_probs=75.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEc
Q 016936 150 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 229 (380)
Q Consensus 150 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~ 229 (380)
...++|||+|||+.+++++|+++|++||.|..|+++.++. ++++|||||+|.+.++|++|++.|++..+.|+.|+|.++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 4457999999999999999999999999999999999975 999999999999999999999999999999999999997
Q ss_pred c
Q 016936 230 T 230 (380)
Q Consensus 230 ~ 230 (380)
.
T Consensus 93 ~ 93 (95)
T 2ywk_A 93 S 93 (95)
T ss_dssp C
T ss_pred C
Confidence 5
No 73
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=4.4e-17 Score=125.76 Aligned_cols=87 Identities=23% Similarity=0.438 Sum_probs=80.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeC-CCCCCCceEEEEEEcChhHHHHHHHHh-CCCeeCCeEEEE
Q 016936 149 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKD-RDTGNSKGYGFCVYQDPAVTDIACAAL-NGLKMGDKTLTV 226 (380)
Q Consensus 149 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~-~~~~~~~g~afV~f~~~~~A~~Ai~~l-~g~~~~g~~i~v 226 (380)
....++|||+|||..+++++|+++|++||.|..|+++.+ +.++.++|||||+|.+.++|++|+..| ++..+.|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 344579999999999999999999999999999999998 678999999999999999999999999 999999999999
Q ss_pred EEcccCCCC
Q 016936 227 RRATASSGQ 235 (380)
Q Consensus 227 ~~~~~~~~~ 235 (380)
.++.++...
T Consensus 92 ~~a~~~~~~ 100 (107)
T 2cph_A 92 EWADSEVTV 100 (107)
T ss_dssp EECCCCCCC
T ss_pred EeCCCCCCC
Confidence 999876443
No 74
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.1e-17 Score=125.45 Aligned_cols=84 Identities=24% Similarity=0.452 Sum_probs=77.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC---CCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEE
Q 016936 151 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRD---TGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 227 (380)
Q Consensus 151 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~---~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~ 227 (380)
..++|||+|||..+++++|+++|++||.|..|.+..++. ++.++|||||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 447999999999999999999999999999999998865 55899999999999999999999999999999999999
Q ss_pred EcccCCC
Q 016936 228 RATASSG 234 (380)
Q Consensus 228 ~~~~~~~ 234 (380)
++.++..
T Consensus 84 ~a~~~~~ 90 (98)
T 2cpf_A 84 ISERATK 90 (98)
T ss_dssp CSSCSSC
T ss_pred EccCCCC
Confidence 9977643
No 75
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.72 E-value=4.8e-18 Score=129.47 Aligned_cols=80 Identities=16% Similarity=0.268 Sum_probs=76.6
Q ss_pred CCEEEEcCCCC------CCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCC-eEE
Q 016936 152 PDRVFVGGLPY------YFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD-KTL 224 (380)
Q Consensus 152 ~~~l~V~nlp~------~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-~~i 224 (380)
.++|||+|||. .+++++|+++|++||.|..|+++.++.+++++|||||+|.+.++|++|++.|||..+.| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 36999999999 99999999999999999999999998889999999999999999999999999999999 999
Q ss_pred EEEEccc
Q 016936 225 TVRRATA 231 (380)
Q Consensus 225 ~v~~~~~ 231 (380)
+|.++.+
T Consensus 86 ~V~~a~~ 92 (100)
T 3ns6_A 86 FLYTMKD 92 (100)
T ss_dssp EEEESHH
T ss_pred EEEECch
Confidence 9999854
No 76
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.9e-17 Score=126.35 Aligned_cols=87 Identities=24% Similarity=0.521 Sum_probs=80.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEE
Q 016936 148 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 227 (380)
Q Consensus 148 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~ 227 (380)
.....++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++|+.. ++..+.|+.|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 345568999999999999999999999999999999999988899999999999999999999998 9999999999999
Q ss_pred EcccCCCC
Q 016936 228 RATASSGQ 235 (380)
Q Consensus 228 ~~~~~~~~ 235 (380)
++.++...
T Consensus 91 ~a~~~~~~ 98 (105)
T 2dh8_A 91 PCTPRGMQ 98 (105)
T ss_dssp CSCCSSCC
T ss_pred EccCCCCC
Confidence 99876544
No 77
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.72 E-value=4.9e-17 Score=120.54 Aligned_cols=79 Identities=24% Similarity=0.572 Sum_probs=74.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEc
Q 016936 150 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 229 (380)
Q Consensus 150 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~ 229 (380)
...++|||+|||+.+++++|+++|++||.|..|+++.++.+++++|||||+|.+.++|++|++. ++..+.|+.|.|++|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEEEEEeC
Confidence 4457999999999999999999999999999999999988899999999999999999999975 888999999999875
No 78
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6.6e-17 Score=122.17 Aligned_cols=81 Identities=20% Similarity=0.256 Sum_probs=74.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHH----HHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEE
Q 016936 150 EGPDRVFVGGLPYYFTETQIK----ELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 225 (380)
Q Consensus 150 ~~~~~l~V~nlp~~~t~~~l~----~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~ 225 (380)
....+|||+|||+.+++++|+ ++|++||.|..|+++.++.+ +|||||+|.+.++|++|++.|||..+.|++|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 344799999999999999999 99999999999999988654 88999999999999999999999999999999
Q ss_pred EEEcccCC
Q 016936 226 VRRATASS 233 (380)
Q Consensus 226 v~~~~~~~ 233 (380)
|.++.+..
T Consensus 84 V~~a~~~~ 91 (96)
T 2dgx_A 84 VSLATGAS 91 (96)
T ss_dssp EEECCCSS
T ss_pred EEEcCCCC
Confidence 99997653
No 79
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.72 E-value=5.4e-17 Score=120.83 Aligned_cols=79 Identities=16% Similarity=0.377 Sum_probs=75.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 016936 153 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 232 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~ 232 (380)
++|||+|||..+++++|+++|++||.|..++++.++.+++++|||||+|.+.++|++|+ .+++..+.|+.|+|.++.+.
T Consensus 7 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 7 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp TEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccCC
Confidence 69999999999999999999999999999999999888999999999999999999999 89999999999999998764
No 80
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.72 E-value=8.5e-17 Score=133.30 Aligned_cols=150 Identities=17% Similarity=0.145 Sum_probs=102.8
Q ss_pred EEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccCCCCChhHHHHHHHHHHHHHHHHHHHhhh
Q 016936 181 GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQT 260 (380)
Q Consensus 181 ~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (380)
.+++..+ .+.++|||||+|.+.++|++|+..+++....+..+.+.........
T Consensus 2 ~~kl~ln--~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 54 (158)
T 2kn4_A 2 QYKLILN--GKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTV------------------------- 54 (158)
T ss_dssp EEEEEEE--CSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEE-------------------------
T ss_pred cEEEEec--CccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccc-------------------------
Confidence 3566666 3478999999999999999999887754332233322211100000
Q ss_pred cCccccCCCCCccCCccceEEEEeccC-CcccCCChHHHHHHHHHHHHhhcccCCeEEEEecCCCCCCCCCCCccEEEEE
Q 016936 261 SGMNTLGGGMSLFGETLAKVLCLTEAI-TADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLE 339 (380)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~L~~~f~~~G~I~~v~i~~~~~~~~~~~g~g~afV~ 339 (380)
..................+.+.|.. +.+ .++|+++|++||.|.+|.++.+..++. + .|+|||+
T Consensus 55 --~~~~~~~~~~~~~~~~~~l~v~nl~~~~~-----------~~~l~~~F~~~G~v~~~~i~~~~~~g~-~--~g~afV~ 118 (158)
T 2kn4_A 55 --TEGSHHHHHHMDVEGMTSLKVDNLTYRTS-----------PDTLRRVFEKYGRVGDVYIPRDRYTKE-S--RGFAFVR 118 (158)
T ss_dssp --ECCCCCSSCCCCCCBCCEEEEESCCTTCC-----------HHHHHHHHHHHSCEEEEECCCCSSCTT-S--CCEEEEE
T ss_pred --cccccccccccCCCCCCEEEEeCCCCCCC-----------HHHHHHHHHhcCCeEEEEEeecCCCCc-c--ceEEEEE
Confidence 0000000111123445677777643 222 269999999999999999998875554 3 4677999
Q ss_pred eechhhHHHHHHHHcCcccCCeEEEEEecccccc
Q 016936 340 YYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKY 373 (380)
Q Consensus 340 f~~~~~A~~A~~~l~g~~i~gr~l~v~~~~~~~~ 373 (380)
|.+.++|.+|++.|||..|+|++|+|.|+....-
T Consensus 119 f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 119 FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp ESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred ECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 9999999999999999999999999999987643
No 81
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.3e-16 Score=122.26 Aligned_cols=85 Identities=27% Similarity=0.397 Sum_probs=77.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEE
Q 016936 149 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 228 (380)
Q Consensus 149 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~ 228 (380)
....++|||+|||..+++++|+++|++||.|..|+++.++ +.++|||||+|.+.++|++|+..|++..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH--TSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCC--CSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecC--CCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 3455899999999999999999999999999999999985 44789999999999999999999999999999999999
Q ss_pred cccCCCC
Q 016936 229 ATASSGQ 235 (380)
Q Consensus 229 ~~~~~~~ 235 (380)
+.+....
T Consensus 90 a~~~~~~ 96 (103)
T 2cqi_A 90 ATTPSSQ 96 (103)
T ss_dssp CCCTTCC
T ss_pred CCCCccc
Confidence 9876443
No 82
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.71 E-value=3.8e-17 Score=136.37 Aligned_cols=141 Identities=20% Similarity=0.177 Sum_probs=79.6
Q ss_pred EEeCCHHHHHHHH-HcCCceec--CceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCC
Q 016936 85 VEMRTVEEASNAM-ALDGIIFE--GVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLP 161 (380)
Q Consensus 85 V~f~~~~~a~~ai-~l~~~~i~--g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp 161 (380)
.+|.+.++|..|+ .+++.... |+-....+........-.....+.+ ......+......++|||+|||
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~---------~~~~~~~~~~~~~~~l~V~nLp 81 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDD---------DELEPGPQRSVEGWILFVTSIH 81 (165)
T ss_dssp ----------------------------------------------------------------CCCCC-CEEEEEESCC
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCC---------CCCCCCCCCCCCCCEEEEeCCC
Confidence 7899999999999 77775544 5555554422111000000000000 0000011122344789999999
Q ss_pred CCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccCCC
Q 016936 162 YYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSG 234 (380)
Q Consensus 162 ~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~~~ 234 (380)
+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.....
T Consensus 82 ~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 82 EEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp TTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred CCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 9999999999999999999999999988999999999999999999999999999999999999999977643
No 83
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.71 E-value=5.7e-17 Score=123.28 Aligned_cols=80 Identities=25% Similarity=0.431 Sum_probs=76.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeE--------EEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCe
Q 016936 151 GPDRVFVGGLPYYFTETQIKELLESFGTLHG--------FDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDK 222 (380)
Q Consensus 151 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 222 (380)
..++|||+|||.++++++|+++|++||.|.. ++++.++.+++++|||||+|.+.++|++|++.|+|..+.|+
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~ 91 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 91 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 3479999999999999999999999999999 99999988899999999999999999999999999999999
Q ss_pred EEEEEEcc
Q 016936 223 TLTVRRAT 230 (380)
Q Consensus 223 ~i~v~~~~ 230 (380)
.|+|++++
T Consensus 92 ~l~V~~A~ 99 (99)
T 2la6_A 92 PIKVSFAT 99 (99)
T ss_dssp BCEEEECC
T ss_pred EEEEEecC
Confidence 99999873
No 84
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=6.2e-17 Score=124.04 Aligned_cols=85 Identities=25% Similarity=0.502 Sum_probs=78.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEE
Q 016936 149 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 228 (380)
Q Consensus 149 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~ 228 (380)
....++|||+|||+.+++++|+++|++|| |..|+++.++.+++++|||||+|.+.++|++|+ .|++..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 34457999999999999999999999997 999999999888999999999999999999999 7999999999999999
Q ss_pred cccCCCC
Q 016936 229 ATASSGQ 235 (380)
Q Consensus 229 ~~~~~~~ 235 (380)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2dng_A 90 AEGRKQD 96 (103)
T ss_dssp CCCCCCC
T ss_pred ecCCCCC
Confidence 9776433
No 85
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.71 E-value=8.1e-17 Score=123.81 Aligned_cols=85 Identities=24% Similarity=0.384 Sum_probs=78.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCC---eEEEE
Q 016936 150 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD---KTLTV 226 (380)
Q Consensus 150 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g---~~i~v 226 (380)
...++|||+|||..+++++|+++|++||.|..|+++.++ ++.++|||||+|.+.++|++|++.|++..+.| +.|+|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 345799999999999999999999999999999999997 69999999999999999999999999999988 99999
Q ss_pred EEcccCCCC
Q 016936 227 RRATASSGQ 235 (380)
Q Consensus 227 ~~~~~~~~~ 235 (380)
.++......
T Consensus 92 ~~a~~~~~~ 100 (105)
T 2dnh_A 92 KFADTDKES 100 (105)
T ss_dssp EESCSSCCC
T ss_pred EECccCccc
Confidence 999876443
No 86
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.5e-17 Score=125.50 Aligned_cols=82 Identities=26% Similarity=0.359 Sum_probs=78.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcc
Q 016936 151 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 230 (380)
Q Consensus 151 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~ 230 (380)
..++|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++|+..|+|..+.|+.|.|.++.
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 101 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 101 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeec
Confidence 34689999999999999999999999999999999998889999999999999999999999999999999999999987
Q ss_pred cC
Q 016936 231 AS 232 (380)
Q Consensus 231 ~~ 232 (380)
++
T Consensus 102 ~~ 103 (106)
T 1p27_B 102 VR 103 (106)
T ss_dssp ES
T ss_pred CC
Confidence 65
No 87
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.71 E-value=9.1e-18 Score=135.13 Aligned_cols=124 Identities=19% Similarity=0.302 Sum_probs=80.1
Q ss_pred cEEEEEeCCHHHHHHHH-HcCCceecCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcC
Q 016936 81 KFAFVEMRTVEEASNAM-ALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGG 159 (380)
Q Consensus 81 g~afV~f~~~~~a~~ai-~l~~~~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~n 159 (380)
-++|.+|.+...+..|+ .+++....|+.- +.+. .+ .......++|||+|
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~--------------~~---------------~~~~~~~~~l~V~n 54 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYG--------------RP---------------PPDVEGMTSLKVDN 54 (135)
T ss_dssp -------------------------------CCSC--------------CS---------------CSSGGGCCCEEEEC
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCC-CCcC--------------CC---------------CCCCCCCCEEEEeC
Confidence 46788888888899999 677755444321 1110 00 01122346999999
Q ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccCCC
Q 016936 160 LPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSG 234 (380)
Q Consensus 160 lp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~~~ 234 (380)
||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++|+..|++..+.|+.|+|.++.+...
T Consensus 55 Lp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~ 129 (135)
T 2lea_A 55 LTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 129 (135)
T ss_dssp CCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCC
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 999999999999999999999999999988899999999999999999999999999999999999999976543
No 88
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.71 E-value=1.4e-17 Score=125.64 Aligned_cols=82 Identities=16% Similarity=0.339 Sum_probs=75.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEE
Q 016936 149 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 228 (380)
Q Consensus 149 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~ 228 (380)
...+++|||+|||+.+++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.||+..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 34457999999999999999999999999999998888878899999999999999999999999999999999999998
Q ss_pred cc
Q 016936 229 AT 230 (380)
Q Consensus 229 ~~ 230 (380)
+.
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 89
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=3.3e-17 Score=124.37 Aligned_cols=84 Identities=15% Similarity=0.322 Sum_probs=77.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEE
Q 016936 149 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 228 (380)
Q Consensus 149 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~ 228 (380)
....++|||+|||+.+++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.|++..+.|+.|+|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34457899999999999999999999999999888888878899999999999999999999999999999999999999
Q ss_pred cccC
Q 016936 229 ATAS 232 (380)
Q Consensus 229 ~~~~ 232 (380)
+..+
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8654
No 90
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.7e-16 Score=121.61 Aligned_cols=85 Identities=25% Similarity=0.547 Sum_probs=77.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEE
Q 016936 149 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 228 (380)
Q Consensus 149 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~ 228 (380)
....++|||+|||..+++++|+++|++||.|..|+++.++ +.++|||||+|.+.++|++|+..|++..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCT--TTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC--CCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4455899999999999999999999999999999999885 34899999999999999999999999999999999999
Q ss_pred cccCCCC
Q 016936 229 ATASSGQ 235 (380)
Q Consensus 229 ~~~~~~~ 235 (380)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cq3_A 90 ATARVMT 96 (103)
T ss_dssp CCSSCCC
T ss_pred cccCCCC
Confidence 9876443
No 91
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.71 E-value=4.5e-17 Score=120.93 Aligned_cols=81 Identities=23% Similarity=0.491 Sum_probs=75.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCC-CceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcc
Q 016936 152 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN-SKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 230 (380)
Q Consensus 152 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~-~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~ 230 (380)
+++|||+|||..+++++|+++|++||.|..+.++.++.++. ++|||||+|.+.++|++|++.|||..+.|+.|+|.++.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 46999999999999999999999999999999999876655 89999999999999999999999999999999999986
Q ss_pred cC
Q 016936 231 AS 232 (380)
Q Consensus 231 ~~ 232 (380)
+.
T Consensus 84 ~~ 85 (88)
T 4a8x_A 84 AP 85 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 92
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.71 E-value=6.1e-17 Score=125.64 Aligned_cols=83 Identities=28% Similarity=0.340 Sum_probs=78.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcc
Q 016936 151 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 230 (380)
Q Consensus 151 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~ 230 (380)
..++|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++|+..|+|..+.|+.|.|.++.
T Consensus 25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 104 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 104 (110)
T ss_dssp TBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcc
Confidence 34789999999999999999999999999999999998889999999999999999999999999999999999999987
Q ss_pred cCC
Q 016936 231 ASS 233 (380)
Q Consensus 231 ~~~ 233 (380)
++.
T Consensus 105 ~~~ 107 (110)
T 1oo0_B 105 VKG 107 (110)
T ss_dssp ESS
T ss_pred cCC
Confidence 653
No 93
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=6.5e-17 Score=123.90 Aligned_cols=85 Identities=22% Similarity=0.400 Sum_probs=78.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEE
Q 016936 149 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 228 (380)
Q Consensus 149 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~ 228 (380)
....++|||+|||+.+++++|+++|++||.|..|+++.+ ++.++|||||+|.+.++|++|++.|++..+.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 345579999999999999999999999999999999988 799999999999999999999999999999999999999
Q ss_pred cccCCCC
Q 016936 229 ATASSGQ 235 (380)
Q Consensus 229 ~~~~~~~ 235 (380)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2d9p_A 90 AQRKEER 96 (103)
T ss_dssp CSSCCCC
T ss_pred ecccccC
Confidence 9876443
No 94
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6e-17 Score=124.35 Aligned_cols=84 Identities=27% Similarity=0.492 Sum_probs=77.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC-CCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEE
Q 016936 150 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT-GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 228 (380)
Q Consensus 150 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~-~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~ 228 (380)
...++|||+|||+.+++++|+++|++|| |..|.++.++.+ ++++|||||+|.+.++|++|+ .|++..+.|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4457999999999999999999999999 999999999877 899999999999999999999 8999999999999999
Q ss_pred cccCCCC
Q 016936 229 ATASSGQ 235 (380)
Q Consensus 229 ~~~~~~~ 235 (380)
+.++...
T Consensus 91 a~~~~~~ 97 (104)
T 1wi8_A 91 ADQAQDK 97 (104)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9876543
No 95
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.71 E-value=7.4e-17 Score=120.89 Aligned_cols=82 Identities=30% Similarity=0.589 Sum_probs=76.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEc
Q 016936 150 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 229 (380)
Q Consensus 150 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~ 229 (380)
...++|||+|||..+++++|+++|++||.|..+++.++ +++++|||||+|.+.++|++|++.|++..+.|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 44579999999999999999999999999999999985 7899999999999999999999999999999999999998
Q ss_pred ccCC
Q 016936 230 TASS 233 (380)
Q Consensus 230 ~~~~ 233 (380)
.+..
T Consensus 84 ~~~~ 87 (92)
T 2dgv_A 84 RNAS 87 (92)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 7654
No 96
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=8.9e-17 Score=125.32 Aligned_cols=85 Identities=21% Similarity=0.368 Sum_probs=79.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCee--------EEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCC
Q 016936 150 EGPDRVFVGGLPYYFTETQIKELLESFGTLH--------GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD 221 (380)
Q Consensus 150 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 221 (380)
...++|||+|||..+++++|+++|++||.|. .|+++.++.+++++|||||+|.+.++|++|++.||+..+.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 4457999999999999999999999999999 69999998889999999999999999999999999999999
Q ss_pred eEEEEEEcccCCC
Q 016936 222 KTLTVRRATASSG 234 (380)
Q Consensus 222 ~~i~v~~~~~~~~ 234 (380)
+.|+|.++..+..
T Consensus 93 ~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 93 SKLKVSLARKKPP 105 (113)
T ss_dssp EECEEECSSCCCC
T ss_pred CEEEEEECCCCCC
Confidence 9999999877643
No 97
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.70 E-value=9.3e-17 Score=126.23 Aligned_cols=82 Identities=28% Similarity=0.498 Sum_probs=77.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEE
Q 016936 148 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 227 (380)
Q Consensus 148 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~ 227 (380)
.....++|||+|||+++++++|+++|++||.|..|++++++.+++++|||||+|.+.++|++|++.||+..+.|+.|+|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34455899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred Ec
Q 016936 228 RA 229 (380)
Q Consensus 228 ~~ 229 (380)
++
T Consensus 116 ~a 117 (118)
T 2khc_A 116 LK 117 (118)
T ss_dssp EC
T ss_pred ec
Confidence 86
No 98
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.70 E-value=7.7e-17 Score=126.19 Aligned_cols=83 Identities=30% Similarity=0.572 Sum_probs=78.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEc
Q 016936 150 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 229 (380)
Q Consensus 150 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~ 229 (380)
...++|||+|||..+++++|+++|++||.|..|.+..++ +++++|||||+|.+.++|++|++.|+|..+.|+.|.|.++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 344799999999999999999999999999999999997 8999999999999999999999999999999999999999
Q ss_pred ccCC
Q 016936 230 TASS 233 (380)
Q Consensus 230 ~~~~ 233 (380)
....
T Consensus 84 ~~~~ 87 (116)
T 2fy1_A 84 KKPS 87 (116)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7654
No 99
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.2e-16 Score=125.24 Aligned_cols=83 Identities=33% Similarity=0.605 Sum_probs=77.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEE
Q 016936 149 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 228 (380)
Q Consensus 149 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~ 228 (380)
....++|||+|||..+++++|+++|++||.|..|++++++.+++++|||||+|.+.++|++|++.+++ .+.|+.|+|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 34458999999999999999999999999999999999988899999999999999999999999998 89999999999
Q ss_pred cccC
Q 016936 229 ATAS 232 (380)
Q Consensus 229 ~~~~ 232 (380)
+...
T Consensus 93 a~~~ 96 (116)
T 2cqd_A 93 AYLG 96 (116)
T ss_dssp STTT
T ss_pred cccC
Confidence 8654
No 100
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.70 E-value=1.2e-16 Score=123.40 Aligned_cols=82 Identities=26% Similarity=0.415 Sum_probs=77.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEE
Q 016936 148 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 227 (380)
Q Consensus 148 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~ 227 (380)
.....++|||+|||+.+++++|+++|++||.|..|.++.++ ++.++|||||+|.+.++|++|++.|++..+.|+.|+|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34556799999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred Ecc
Q 016936 228 RAT 230 (380)
Q Consensus 228 ~~~ 230 (380)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 975
No 101
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.70 E-value=7.7e-17 Score=116.76 Aligned_cols=73 Identities=18% Similarity=0.301 Sum_probs=69.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcc
Q 016936 152 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 230 (380)
Q Consensus 152 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~ 230 (380)
+..|||+||++.+++++|+++|.+||+|.++++.. ++|||||+|.++++|.+|++.||+..+.|+.|+|.++.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 46899999999999999999999999999999854 58999999999999999999999999999999999984
No 102
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.70 E-value=1.4e-16 Score=130.87 Aligned_cols=139 Identities=22% Similarity=0.218 Sum_probs=104.5
Q ss_pred CCCCceEEEEEEcChhHHHHHHHHh-CCCeeCCeEEEEEEcccCCCCChhHHHHHHHHHHHHHHHHHHHhhhcCccccCC
Q 016936 190 TGNSKGYGFCVYQDPAVTDIACAAL-NGLKMGDKTLTVRRATASSGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGG 268 (380)
Q Consensus 190 ~~~~~g~afV~f~~~~~A~~Ai~~l-~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (380)
....+|+++|+|.+.++|++|++.+ +|..+.| .|.+.++........ .......
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~------------------------~~~~~~~ 63 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTE------------------------GSHHHHH 63 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEEC------------------------SSSSCCC
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccc------------------------ccccccc
Confidence 3567899999999999999999999 9999999 999998754211000 0000001
Q ss_pred CCCccCCccceEEEEeccC-CcccCCChHHHHHHHHHHHHhhcccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHH
Q 016936 269 GMSLFGETLAKVLCLTEAI-TADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCA 347 (380)
Q Consensus 269 ~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~L~~~f~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~ 347 (380)
........+.+.+.+.|.. +.++ ++|+++|++||.|.+|.+++++ + |+|||+|.+.++|.
T Consensus 64 ~~~~~~~~~~~~l~V~nl~~~~t~-----------~~l~~~F~~~G~i~~v~i~~~~------~--g~afV~f~~~~~a~ 124 (150)
T 2i2y_A 64 HMHRDSCPLDCKVYVGNLGNNGNK-----------TELERAFGYYGPLRSVWVARNP------P--GFAFVEFEDPRDAA 124 (150)
T ss_dssp CSCSSSSTTSCEEEEESCCSCCSC-----------HHHHHHHHHHSCEEEEEECSSS------C--SEEEEEESSHHHHH
T ss_pred cccccCCCCCCEEEEeCCCCCCCH-----------HHHHHHHHhhCCEEEEEEeeCC------C--cEEEEEECCHHHHH
Confidence 1111224455667777743 3322 6999999999999999998762 2 67899999999999
Q ss_pred HHHHHHcCcccCCeEEEEEeccccc
Q 016936 348 TAKNALSGRKFGGNTVNAFYYPEDK 372 (380)
Q Consensus 348 ~A~~~l~g~~i~gr~l~v~~~~~~~ 372 (380)
+|++.|||..|+|++|+|+|+...+
T Consensus 125 ~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 125 DAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHcCCCEECCeEEEEEEcCCCC
Confidence 9999999999999999999997653
No 103
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=2e-16 Score=123.58 Aligned_cols=83 Identities=23% Similarity=0.372 Sum_probs=77.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEE
Q 016936 149 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 228 (380)
Q Consensus 149 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~ 228 (380)
....++|||+|||..+++++|+++|++||.|..|+++.++ +++++|||||+|.+.++|++|++.|++..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3445799999999999999999999999999999999997 599999999999999999999999999999999999999
Q ss_pred cccC
Q 016936 229 ATAS 232 (380)
Q Consensus 229 ~~~~ 232 (380)
+...
T Consensus 91 a~~~ 94 (114)
T 2do0_A 91 DERA 94 (114)
T ss_dssp CSCC
T ss_pred cccC
Confidence 8654
No 104
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.2e-16 Score=120.96 Aligned_cols=85 Identities=24% Similarity=0.393 Sum_probs=78.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEE
Q 016936 149 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 228 (380)
Q Consensus 149 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~ 228 (380)
....++|||+|||+.+++++|+++|++||.|..|+++.++.++.++|||||+|.+.++|++|+. ++..+.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 4455799999999999999999999999999999999998889999999999999999999998 47899999999999
Q ss_pred cccCCCC
Q 016936 229 ATASSGQ 235 (380)
Q Consensus 229 ~~~~~~~ 235 (380)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cqg_A 90 PNSKQSQ 96 (103)
T ss_dssp CCTTCCC
T ss_pred cCCCCcC
Confidence 9876543
No 105
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.1e-17 Score=125.33 Aligned_cols=77 Identities=22% Similarity=0.266 Sum_probs=73.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcc
Q 016936 152 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 230 (380)
Q Consensus 152 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~ 230 (380)
.++|||+|||+++++++|+++|++||.|..|.+++++. ++++|||||+|.+.++|++|+. +++..+.|+.|.|.++.
T Consensus 11 ~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 11 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp GGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 36999999999999999999999999999999999986 9999999999999999999999 89999999999999864
No 106
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.70 E-value=5.5e-17 Score=129.42 Aligned_cols=84 Identities=20% Similarity=0.397 Sum_probs=79.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEE
Q 016936 149 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 228 (380)
Q Consensus 149 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~ 228 (380)
....++|||+|||..+++++|+++|++||.|..|+++.++.+++++|||||+|.+.++|++|++.|++..+.|++|.|.+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44557999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred cccC
Q 016936 229 ATAS 232 (380)
Q Consensus 229 ~~~~ 232 (380)
+.++
T Consensus 123 a~~~ 126 (129)
T 2kxn_B 123 SITK 126 (129)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 8765
No 107
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.70 E-value=2.4e-17 Score=118.55 Aligned_cols=75 Identities=25% Similarity=0.585 Sum_probs=71.9
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEc
Q 016936 154 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 229 (380)
Q Consensus 154 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~ 229 (380)
+|||+|||+.+++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++ +++..+.|++|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999998889999999999999999999998 8999999999999875
No 108
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.69 E-value=7.9e-17 Score=124.69 Aligned_cols=85 Identities=26% Similarity=0.437 Sum_probs=77.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEc
Q 016936 150 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 229 (380)
Q Consensus 150 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~ 229 (380)
...++|||+|||..+++++|+++|+.||.|..|++++++.+|+++|||||+|.+.++|++|+..+ +..+.|+.|.|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 44579999999999999999999999999999999999888999999999999999999999975 59999999999999
Q ss_pred ccCCCC
Q 016936 230 TASSGQ 235 (380)
Q Consensus 230 ~~~~~~ 235 (380)
.++..+
T Consensus 102 ~~~~~~ 107 (109)
T 2rs2_A 102 FPRRAQ 107 (109)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 876544
No 109
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.69 E-value=9.3e-17 Score=132.29 Aligned_cols=81 Identities=25% Similarity=0.430 Sum_probs=76.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcC--CeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEE
Q 016936 151 GPDRVFVGGLPYYFTETQIKELLESFG--TLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 228 (380)
Q Consensus 151 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~ 228 (380)
..++|||+|||+++++++|+++|++|| .|..|+++.++.+|+++|||||+|.+.++|++|++.|||..+.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 999999999988999999999999999999999999999999999999999
Q ss_pred ccc
Q 016936 229 ATA 231 (380)
Q Consensus 229 ~~~ 231 (380)
+.+
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 853
No 110
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=7.4e-17 Score=123.83 Aligned_cols=84 Identities=26% Similarity=0.403 Sum_probs=78.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHh-cCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCe-eCCeEEEEEE
Q 016936 151 GPDRVFVGGLPYYFTETQIKELLES-FGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLK-MGDKTLTVRR 228 (380)
Q Consensus 151 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~-~~g~~i~v~~ 228 (380)
..++|||+|||+.+++++|+++|++ ||.|..|+++.++ ++.++|||||+|.+.++|.+|++.|++.. +.|+.|+|.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 3479999999999999999999999 9999999999998 89999999999999999999999999999 9999999999
Q ss_pred cccCCCC
Q 016936 229 ATASSGQ 235 (380)
Q Consensus 229 ~~~~~~~ 235 (380)
+.++...
T Consensus 87 a~~~~~~ 93 (104)
T 2dhg_A 87 AIPKASR 93 (104)
T ss_dssp CCCCCSC
T ss_pred ccCCCcC
Confidence 8766433
No 111
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.69 E-value=1.9e-16 Score=128.29 Aligned_cols=87 Identities=30% Similarity=0.521 Sum_probs=81.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEE
Q 016936 149 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 228 (380)
Q Consensus 149 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~ 228 (380)
....++|||+|||..+++++|+++|+.||.|..|+++.++.+++++|||||+|.+.++|.+|++.|++..+.|+.|+|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 44558999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred cccCCCC
Q 016936 229 ATASSGQ 235 (380)
Q Consensus 229 ~~~~~~~ 235 (380)
+.+....
T Consensus 119 a~~~~~~ 125 (139)
T 1u6f_A 119 AASGHQR 125 (139)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9876443
No 112
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=6.9e-17 Score=123.98 Aligned_cols=80 Identities=43% Similarity=0.746 Sum_probs=76.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 016936 153 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 232 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~ 232 (380)
++|||+|||..+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++|++.|+|..+.|+.|+|.++.+.
T Consensus 9 ~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 88 (104)
T 1p1t_A 9 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASE 88 (104)
T ss_dssp SCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCT
T ss_pred cEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCc
Confidence 69999999999999999999999999999999999888999999999999999999999999999999999999998654
No 113
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=3.1e-16 Score=117.22 Aligned_cols=81 Identities=23% Similarity=0.365 Sum_probs=75.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEc
Q 016936 150 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 229 (380)
Q Consensus 150 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~ 229 (380)
...++|||+|||+.+++++|+++|+.| .|..|+++.+ .+|+++|||||+|.+.++|++|+. +++..+.|+.|.|.++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 345799999999999999999999999 9999999999 579999999999999999999999 9999999999999998
Q ss_pred ccCC
Q 016936 230 TASS 233 (380)
Q Consensus 230 ~~~~ 233 (380)
..+.
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 7653
No 114
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.3e-16 Score=121.22 Aligned_cols=79 Identities=13% Similarity=0.172 Sum_probs=71.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhC--CCeeCCeEEEEEE
Q 016936 151 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALN--GLKMGDKTLTVRR 228 (380)
Q Consensus 151 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~--g~~~~g~~i~v~~ 228 (380)
..++|||+|||+++++++|+++|++||.|.+|+++++ +|||||+|.+.++|++|++.++ +..+.|++|+|.+
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 3479999999999999999999999999999999865 6899999999999999999886 4789999999999
Q ss_pred cccCCCC
Q 016936 229 ATASSGQ 235 (380)
Q Consensus 229 ~~~~~~~ 235 (380)
+..+...
T Consensus 89 A~~~~~~ 95 (105)
T 1sjq_A 89 SNHKELK 95 (105)
T ss_dssp CSSSSCC
T ss_pred cCCCCCC
Confidence 9876444
No 115
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.68 E-value=2.6e-16 Score=127.56 Aligned_cols=83 Identities=20% Similarity=0.365 Sum_probs=77.4
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEE
Q 016936 147 GGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 226 (380)
Q Consensus 147 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v 226 (380)
......++|||+|||..+++++|+++|++||.|..+++++++.+++++|||||+|.+.++|++|++.|++..+.|+.|+|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34556689999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EEc
Q 016936 227 RRA 229 (380)
Q Consensus 227 ~~~ 229 (380)
++|
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 875
No 116
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.4e-17 Score=122.86 Aligned_cols=80 Identities=21% Similarity=0.424 Sum_probs=75.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcc
Q 016936 151 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 230 (380)
Q Consensus 151 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~ 230 (380)
..++|||+|||+.+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++|++.|||..+.|+.+++.+..
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 45799999999999999999999999999999999998889999999999999999999999999999999999887653
No 117
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.68 E-value=1.3e-16 Score=115.53 Aligned_cols=73 Identities=18% Similarity=0.223 Sum_probs=69.0
Q ss_pred ccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceecCceE
Q 016936 31 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAV 109 (380)
Q Consensus 31 ~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~g~~i 109 (380)
.+.-|||+||++++||++|+++|.+||+ |.++.+..++|||||+|.++++|.+|+ .||+..+.|++|
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~------------V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I 73 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGP------------LVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTI 73 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSC------------EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCC------------EEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEE
Confidence 3678999999999999999999999998 888999999999999999999999999 899999999999
Q ss_pred EEecCC
Q 016936 110 RVRRPT 115 (380)
Q Consensus 110 ~v~~~~ 115 (380)
+|..+.
T Consensus 74 ~V~~A~ 79 (89)
T 2wbr_A 74 FAESPS 79 (89)
T ss_dssp EEECCC
T ss_pred EEEECC
Confidence 999874
No 118
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.6e-16 Score=122.98 Aligned_cols=82 Identities=26% Similarity=0.585 Sum_probs=75.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEE
Q 016936 149 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 228 (380)
Q Consensus 149 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~ 228 (380)
....++|||+|||..+++++|+++|++||.|..|++..++ +.++|||||+|.+.++|++|++.|+|..+.|+.|+|.+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4455899999999999999999999999999999999884 45899999999999999999999999999999999999
Q ss_pred cccC
Q 016936 229 ATAS 232 (380)
Q Consensus 229 ~~~~ 232 (380)
+.++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8764
No 119
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.68 E-value=1.3e-16 Score=124.76 Aligned_cols=78 Identities=19% Similarity=0.398 Sum_probs=72.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcc
Q 016936 151 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 230 (380)
Q Consensus 151 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~ 230 (380)
..++|||+|||..+++++|+++|++||.|..|.++.+ +.++|||||+|.+.++|.+|+..|||..+.|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 3479999999999999999999999999999999875 5568999999999999999999999999999999999986
Q ss_pred c
Q 016936 231 A 231 (380)
Q Consensus 231 ~ 231 (380)
+
T Consensus 84 ~ 84 (115)
T 3lqv_A 84 A 84 (115)
T ss_dssp H
T ss_pred C
Confidence 4
No 120
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.68 E-value=5.1e-16 Score=123.11 Aligned_cols=85 Identities=21% Similarity=0.345 Sum_probs=79.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEE
Q 016936 149 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 228 (380)
Q Consensus 149 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~ 228 (380)
....++|||+|||..+++++|+++|++||.|..|++..++ +++++|||||+|.+.++|++|+..|++..+.|+.|+|.+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4555799999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred cccCCC
Q 016936 229 ATASSG 234 (380)
Q Consensus 229 ~~~~~~ 234 (380)
+.....
T Consensus 111 a~~~~~ 116 (124)
T 2kt5_A 111 VASQID 116 (124)
T ss_dssp ECCTTC
T ss_pred eCCCCC
Confidence 876543
No 121
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=4.8e-17 Score=117.57 Aligned_cols=76 Identities=28% Similarity=0.494 Sum_probs=72.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEc
Q 016936 153 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 229 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~ 229 (380)
++|||+|||..+++++|+++|++||.|..+.+++++.+++++|+|||+|.+.++|++|++.++ ..+.|+.|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 379999999999999999999999999999999998889999999999999999999999998 9999999999986
No 122
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.68 E-value=2.4e-16 Score=118.46 Aligned_cols=77 Identities=17% Similarity=0.161 Sum_probs=69.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCe--eCCeEEEEE
Q 016936 150 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLK--MGDKTLTVR 227 (380)
Q Consensus 150 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~--~~g~~i~v~ 227 (380)
..+++|||+|||.++++++|+++|++||.|.+++++++ +|+|||+|.+.++|.+|++.+++.. +.|++|.|.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 34479999999999999999999999999999999753 6799999999999999999999875 789999999
Q ss_pred EcccC
Q 016936 228 RATAS 232 (380)
Q Consensus 228 ~~~~~ 232 (380)
++..+
T Consensus 93 ~S~~k 97 (100)
T 3r27_A 93 YSTSQ 97 (100)
T ss_dssp ECSCS
T ss_pred ecccc
Confidence 98764
No 123
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.68 E-value=5.2e-17 Score=130.12 Aligned_cols=84 Identities=21% Similarity=0.288 Sum_probs=78.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeE--EEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCC----eeCCe
Q 016936 149 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHG--FDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGL----KMGDK 222 (380)
Q Consensus 149 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~----~~~g~ 222 (380)
....++|||+|||+.+++++|+++|++||.|.. |++++++.+|+++|||||+|.+. +|.+|+..|||. .+.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 345579999999999999999999999999976 99999988999999999999999 999999999999 99999
Q ss_pred EEEEEEcccCC
Q 016936 223 TLTVRRATASS 233 (380)
Q Consensus 223 ~i~v~~~~~~~ 233 (380)
.|.|.++.+..
T Consensus 99 ~l~V~~a~~~~ 109 (131)
T 2m2b_A 99 TINVEFAKGSK 109 (131)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999997653
No 124
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.68 E-value=1.8e-16 Score=126.06 Aligned_cols=85 Identities=25% Similarity=0.341 Sum_probs=79.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcc
Q 016936 151 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 230 (380)
Q Consensus 151 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~ 230 (380)
..++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++|++.||+..+.|+.|.|.++.
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 100 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 100 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEec
Confidence 34799999999999999999999999999999999998889999999999999999999999999999999999999998
Q ss_pred cCCCC
Q 016936 231 ASSGQ 235 (380)
Q Consensus 231 ~~~~~ 235 (380)
.....
T Consensus 101 ~~~~~ 105 (126)
T 3ex7_B 101 VRGPP 105 (126)
T ss_dssp ESSSC
T ss_pred CCCCC
Confidence 76544
No 125
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.4e-16 Score=120.96 Aligned_cols=78 Identities=19% Similarity=0.223 Sum_probs=70.4
Q ss_pred hcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcC--Cceec
Q 016936 29 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALD--GIIFE 105 (380)
Q Consensus 29 ~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~--~~~i~ 105 (380)
..+.++|||+|||+++|+++|+++|++||. |.++.+.+++|||||+|.+.++|++|+ .++ +..+.
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~------------V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~ 80 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGK------------VTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLR 80 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCC------------EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------EEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 456799999999999999999999999998 888888889999999999999999999 575 47899
Q ss_pred CceEEEecCCCCC
Q 016936 106 GVAVRVRRPTDYN 118 (380)
Q Consensus 106 g~~i~v~~~~~~~ 118 (380)
|++|+|.++..+.
T Consensus 81 Gr~l~V~~A~~~~ 93 (105)
T 1sjq_A 81 GQPIYIQFSNHKE 93 (105)
T ss_dssp TEECCBCCCSSSS
T ss_pred CEEEEEEEcCCCC
Confidence 9999999986654
No 126
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=5.1e-16 Score=120.19 Aligned_cols=84 Identities=20% Similarity=0.411 Sum_probs=75.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEE
Q 016936 149 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 228 (380)
Q Consensus 149 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~ 228 (380)
....++|||+|||..+++++|+++|++||.|..|.+..+ +.++|||||+|.+.++|++|++.||+..+.|+.|+|.+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 344579999999999999999999999999999999654 56899999999999999999999999999999999999
Q ss_pred cccCCCC
Q 016936 229 ATASSGQ 235 (380)
Q Consensus 229 ~~~~~~~ 235 (380)
+.+....
T Consensus 96 a~~~~~~ 102 (109)
T 1x4a_A 96 PRSGRGT 102 (109)
T ss_dssp CCCCCCC
T ss_pred cccCCCC
Confidence 9776433
No 127
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=8.2e-17 Score=122.87 Aligned_cols=74 Identities=34% Similarity=0.468 Sum_probs=66.9
Q ss_pred ceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecC-CCcEEEEEeCCHHHHHHHH-HcCCceecCceEE
Q 016936 33 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH-EKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVR 110 (380)
Q Consensus 33 ~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~-~~g~afV~f~~~~~a~~ai-~l~~~~i~g~~i~ 110 (380)
++|||+|||+++++++|+++|++||. |..+.+.. ++|||||+|.+.++|++|+ .+++..+.|++|+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~------------i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 68 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGP------------LRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVR 68 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCC------------CSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEE
Confidence 58999999999999999999999997 66666665 4999999999999999999 6999999999999
Q ss_pred EecCCCCC
Q 016936 111 VRRPTDYN 118 (380)
Q Consensus 111 v~~~~~~~ 118 (380)
|.++....
T Consensus 69 V~~a~~~~ 76 (101)
T 2hvz_A 69 VELSTGMP 76 (101)
T ss_dssp EEESSSCC
T ss_pred EEEccCCC
Confidence 99977654
No 128
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.6e-16 Score=124.04 Aligned_cols=78 Identities=18% Similarity=0.368 Sum_probs=75.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEccc
Q 016936 153 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 231 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~ 231 (380)
++|||+|||..+++++|+++|++||.|..|+++.++.++.++|||||+|.+.++|++|+ .|++..+.|+.|+|.++.+
T Consensus 26 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 26 RTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp TEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 79999999999999999999999999999999999888999999999999999999999 8999999999999999854
No 129
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.67 E-value=3.3e-17 Score=122.26 Aligned_cols=79 Identities=33% Similarity=0.567 Sum_probs=74.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 016936 153 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 232 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~ 232 (380)
++|||+|||..+++++|+++|++||.|..+.+.+++.+++++|||||+|.+.+ |.+|+..|||..+.|+.|+|.++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999888999999999999999 99999999999999999999998765
No 130
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.67 E-value=1.2e-16 Score=120.09 Aligned_cols=79 Identities=22% Similarity=0.156 Sum_probs=71.3
Q ss_pred hhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCce--e
Q 016936 28 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGII--F 104 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~--i 104 (380)
...++++|||+|||.++|+++|+++|++||. |.++.+.++||+|||+|.+.++|.+|+ .+++.. +
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~------------V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i 84 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGP------------ISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYI 84 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSC------------EEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCC------------EEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCcee
Confidence 4567899999999999999999999999998 888888889999999999999999999 788764 7
Q ss_pred cCceEEEecCCCCC
Q 016936 105 EGVAVRVRRPTDYN 118 (380)
Q Consensus 105 ~g~~i~v~~~~~~~ 118 (380)
.|++|+|.++..++
T Consensus 85 ~Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 85 AGHPAFVNYSTSQK 98 (100)
T ss_dssp TTEEEEEEECSCSC
T ss_pred CCcEEEEEeccccc
Confidence 89999999977653
No 131
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.67 E-value=1.2e-16 Score=121.32 Aligned_cols=77 Identities=19% Similarity=0.357 Sum_probs=66.7
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEe------cCCCcEEEEEeCCHHHHHHHH-Hc
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASNAM-AL 99 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~------~~~~g~afV~f~~~~~a~~ai-~l 99 (380)
..-...++|||+|||+++|+++|+++|++||. |.++.+ +.++|||||+|.+.++|.+|+ .+
T Consensus 14 n~~~~gt~lfV~nLp~~~te~~L~~~F~~~G~------------I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~l 81 (99)
T 4fxv_A 14 NLYFQGTNLIVNYLPQNMTQDELRSLFSSIGE------------VESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81 (99)
T ss_dssp --CCCCSEEEEESCCTTCCHHHHHHHHHTTSC------------EEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------EEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHh
Confidence 34456789999999999999999999999998 555554 345789999999999999999 79
Q ss_pred CCceecCceEEEecCC
Q 016936 100 DGIIFEGVAVRVRRPT 115 (380)
Q Consensus 100 ~~~~i~g~~i~v~~~~ 115 (380)
|+..|.|++|+|.|+.
T Consensus 82 ng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 82 NGLRLQSKTIKVSYAR 97 (99)
T ss_dssp TTCEETTEECEEEECC
T ss_pred CCCEECCEEEEEEEee
Confidence 9999999999999864
No 132
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=2e-16 Score=122.87 Aligned_cols=83 Identities=18% Similarity=0.281 Sum_probs=76.1
Q ss_pred CCCEEEEcCCCCCCCHHHHH---HHHHhcCCeeEEEEeeCCCCC---CCceEEEEEEcChhHHHHHHHHhCCCeeCCeEE
Q 016936 151 GPDRVFVGGLPYYFTETQIK---ELLESFGTLHGFDLVKDRDTG---NSKGYGFCVYQDPAVTDIACAALNGLKMGDKTL 224 (380)
Q Consensus 151 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~l~~~~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i 224 (380)
..++|||+|||+.+++++|+ ++|++||.|..|.+++++.++ +++|||||+|.+.++|++|++.||+..+.|+.|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 44799999999999999999 999999999999999886543 566999999999999999999999999999999
Q ss_pred EEEEcccCC
Q 016936 225 TVRRATASS 233 (380)
Q Consensus 225 ~v~~~~~~~ 233 (380)
+|.++.++.
T Consensus 94 ~V~~a~~k~ 102 (111)
T 2cpi_A 94 KASLGTTKY 102 (111)
T ss_dssp EEESCCCCS
T ss_pred EEEeccccc
Confidence 999998764
No 133
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.67 E-value=6.3e-16 Score=127.75 Aligned_cols=85 Identities=24% Similarity=0.372 Sum_probs=79.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEc
Q 016936 150 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 229 (380)
Q Consensus 150 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~ 229 (380)
...++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|++.|++..+.|+.|+|.++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34579999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 016936 230 TASSG 234 (380)
Q Consensus 230 ~~~~~ 234 (380)
.+...
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 87543
No 134
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.9e-16 Score=123.64 Aligned_cols=81 Identities=12% Similarity=0.215 Sum_probs=75.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCe-eEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEE
Q 016936 149 AEGPDRVFVGGLPYYFTETQIKELLESFGTL-HGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 227 (380)
Q Consensus 149 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~ 227 (380)
....++|||+|||+.+++++|+++|+.||.| ..|+++.++ +++++|||||+|.+.++|++|++. ++..+.|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 3445799999999999999999999999999 899999998 899999999999999999999997 9999999999999
Q ss_pred Eccc
Q 016936 228 RATA 231 (380)
Q Consensus 228 ~~~~ 231 (380)
++..
T Consensus 90 ~a~~ 93 (114)
T 2cpy_A 90 VVTL 93 (114)
T ss_dssp EECH
T ss_pred ECCH
Confidence 9853
No 135
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.6e-16 Score=123.30 Aligned_cols=82 Identities=27% Similarity=0.518 Sum_probs=77.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 016936 153 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 232 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~ 232 (380)
++|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++|+.. ++..+.|+.|+|.++.++
T Consensus 28 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~~ 106 (116)
T 1x4b_A 28 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAR 106 (116)
T ss_dssp TEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCCC
Confidence 7999999999999999999999999999999999988899999999999999999999998 999999999999999876
Q ss_pred CCC
Q 016936 233 SGQ 235 (380)
Q Consensus 233 ~~~ 235 (380)
...
T Consensus 107 ~~~ 109 (116)
T 1x4b_A 107 EES 109 (116)
T ss_dssp CCC
T ss_pred ccC
Confidence 543
No 136
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=5.8e-16 Score=117.54 Aligned_cols=79 Identities=14% Similarity=0.140 Sum_probs=70.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHh--CCCeeCCeEEEEE
Q 016936 150 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL--NGLKMGDKTLTVR 227 (380)
Q Consensus 150 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l--~g~~~~g~~i~v~ 227 (380)
...++|||+|||+.+++++|+++|++||.|..|.++++ +|||||+|.+.++|.+|++.+ ++..+.|++|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 34579999999999999999999999999999988764 689999999999999999976 4678999999999
Q ss_pred EcccCCC
Q 016936 228 RATASSG 234 (380)
Q Consensus 228 ~~~~~~~ 234 (380)
++..+..
T Consensus 87 ~a~~~~~ 93 (101)
T 2cq1_A 87 YSNHKEL 93 (101)
T ss_dssp ECSCSSC
T ss_pred EcCcccC
Confidence 9986643
No 137
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.66 E-value=4.2e-16 Score=119.78 Aligned_cols=80 Identities=24% Similarity=0.344 Sum_probs=73.9
Q ss_pred CCEEEEcCCCCCC------CHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCe-EE
Q 016936 152 PDRVFVGGLPYYF------TETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDK-TL 224 (380)
Q Consensus 152 ~~~l~V~nlp~~~------t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~-~i 224 (380)
.++|||+|||+.+ ++++|+++|++||.|..|.+++ .+|+++|||||+|.+.++|++|+..|||..+.|+ .|
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 4799999999999 7899999999999999999984 4799999999999999999999999999999998 99
Q ss_pred EEEEcccCC
Q 016936 225 TVRRATASS 233 (380)
Q Consensus 225 ~v~~~~~~~ 233 (380)
+|.++....
T Consensus 93 ~V~~a~~~~ 101 (105)
T 2nlw_A 93 RVNLFTDFD 101 (105)
T ss_dssp EEECSCCCC
T ss_pred EEEEcchHh
Confidence 999987543
No 138
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.9e-16 Score=120.81 Aligned_cols=83 Identities=18% Similarity=0.312 Sum_probs=76.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCC-eeEEEEe-eCCCCCCCceEEEEEEcChhHHHHHHHHhC--CCeeCCeEEEEE
Q 016936 152 PDRVFVGGLPYYFTETQIKELLESFGT-LHGFDLV-KDRDTGNSKGYGFCVYQDPAVTDIACAALN--GLKMGDKTLTVR 227 (380)
Q Consensus 152 ~~~l~V~nlp~~~t~~~l~~~F~~~G~-i~~v~l~-~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~--g~~~~g~~i~v~ 227 (380)
.++|||+|||..+++++|+++|++||. |..+.++ .++.++.++|||||+|.+.++|.+|+..|+ +..+.|+.|+|.
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~ 87 (109)
T 2dis_A 8 NCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVD 87 (109)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEE
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEE
Confidence 479999999999999999999999998 9999998 777788999999999999999999999996 589999999999
Q ss_pred EcccCCC
Q 016936 228 RATASSG 234 (380)
Q Consensus 228 ~~~~~~~ 234 (380)
++.++..
T Consensus 88 ~a~~~~~ 94 (109)
T 2dis_A 88 WAEPEID 94 (109)
T ss_dssp ESCSSCS
T ss_pred EcCCCCC
Confidence 9987643
No 139
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.66 E-value=8.1e-17 Score=122.63 Aligned_cols=81 Identities=27% Similarity=0.506 Sum_probs=74.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEE
Q 016936 150 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDR-DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 228 (380)
Q Consensus 150 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~-~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~ 228 (380)
...++|||+|||+.+++++|+++|++|| |..|+++.++ .+|+++|||||+|.+.++|.+|+ .|+|..+.|+.|+|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 3447999999999999999999999999 9999999987 58999999999999999999999 7999999999999999
Q ss_pred cccC
Q 016936 229 ATAS 232 (380)
Q Consensus 229 ~~~~ 232 (380)
+.++
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 8765
No 140
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.8e-16 Score=119.96 Aligned_cols=81 Identities=16% Similarity=0.207 Sum_probs=74.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEE
Q 016936 149 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 228 (380)
Q Consensus 149 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~ 228 (380)
....++|||+|||+++++++|+++|++||.+ .|+++.++ +++++|||||+|.+.++|++|++ +|+..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3445799999999999999999999999955 99999997 79999999999999999999996 699999999999998
Q ss_pred cccC
Q 016936 229 ATAS 232 (380)
Q Consensus 229 ~~~~ 232 (380)
+...
T Consensus 89 ~~~~ 92 (102)
T 1wez_A 89 NSTA 92 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 8654
No 141
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.66 E-value=3.5e-16 Score=122.83 Aligned_cols=79 Identities=18% Similarity=0.315 Sum_probs=74.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCC---eeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEE
Q 016936 150 EGPDRVFVGGLPYYFTETQIKELLESFGT---LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 226 (380)
Q Consensus 150 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~---i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v 226 (380)
...++|||+|||+.+++++|+++|+.||. |..|+++.++. ++++|||||+|.+.++|++|++ +++..+.|+.|+|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 34579999999999999999999999999 89999999976 9999999999999999999999 8999999999999
Q ss_pred EEcc
Q 016936 227 RRAT 230 (380)
Q Consensus 227 ~~~~ 230 (380)
.++.
T Consensus 93 ~~a~ 96 (118)
T 2db1_A 93 FKSH 96 (118)
T ss_dssp EEEC
T ss_pred EECC
Confidence 9984
No 142
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.65 E-value=4.1e-16 Score=123.68 Aligned_cols=79 Identities=22% Similarity=0.430 Sum_probs=75.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 016936 153 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 232 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~ 232 (380)
++|||+|||.++++++|+++|++||.|..|+++.++.++.++|||||+|.+.++|++|+ .|+|..+.|+.|+|.++...
T Consensus 37 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~ 115 (124)
T 2jwn_A 37 RSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRTN 115 (124)
T ss_dssp TEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCCC
Confidence 79999999999999999999999999999999999888999999999999999999999 79999999999999998764
No 143
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.65 E-value=1.2e-16 Score=114.95 Aligned_cols=75 Identities=23% Similarity=0.439 Sum_probs=71.4
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEc
Q 016936 154 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 229 (380)
Q Consensus 154 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~ 229 (380)
+|||+|||..+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++|++. ++..+.|+.|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999988899999999999999999999995 899999999999875
No 144
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.9e-16 Score=119.71 Aligned_cols=81 Identities=16% Similarity=0.332 Sum_probs=74.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeE-EEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEE
Q 016936 150 EGPDRVFVGGLPYYFTETQIKELLESFGTLHG-FDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 228 (380)
Q Consensus 150 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~-v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~ 228 (380)
....+|||+|||+.+++++|+++|++||.|.. |+++.+ .+++++|||||+|.+.++|++|+.. ++..+.|+.|+|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 44579999999999999999999999999987 888888 5899999999999999999999997 99999999999999
Q ss_pred cccC
Q 016936 229 ATAS 232 (380)
Q Consensus 229 ~~~~ 232 (380)
+...
T Consensus 91 ~~~~ 94 (104)
T 1wg5_A 91 SSRA 94 (104)
T ss_dssp ECTT
T ss_pred CCHH
Confidence 8654
No 145
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.65 E-value=1e-16 Score=125.35 Aligned_cols=101 Identities=19% Similarity=0.232 Sum_probs=85.4
Q ss_pred hcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEe---cCCCcEEEEEeCCHHHHHHHH-HcCCcee
Q 016936 29 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI---NHEKKFAFVEMRTVEEASNAM-ALDGIIF 104 (380)
Q Consensus 29 ~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~---~~~~g~afV~f~~~~~a~~ai-~l~~~~i 104 (380)
+...++|||+|||..+++++|+++|++||. |.++.+ ..++|||||+|.+.++|.+|+ .+|+..+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 72 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGP------------IRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNV 72 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSC------------EEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEE
Confidence 346789999999999999999999999998 566665 456899999999999999999 6999999
Q ss_pred cCceEEEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCC
Q 016936 105 EGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGT 178 (380)
Q Consensus 105 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~ 178 (380)
.|+.|+|.++...... ++++...++++|..+|++||.
T Consensus 73 ~g~~l~v~~a~~~~~~-------------------------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 73 SNRYLVVLYYNANRAF-------------------------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp SSCBCEEEECCHHHHT-------------------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred CCeEEEEEEecCChhh-------------------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 9999999986542110 455666788999999999985
No 146
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=9.8e-16 Score=118.57 Aligned_cols=91 Identities=22% Similarity=0.360 Sum_probs=79.4
Q ss_pred CCCCCccccchhhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHH
Q 016936 16 FPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASN 95 (380)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ 95 (380)
.+..+...+........++|||+|||..+++++|+++|++||. |..+.+..++|||||+|.+.++|.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~------------i~~v~i~~~~g~afV~f~~~~~a~~ 76 (109)
T 1x4g_A 9 TKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQ------------IMEIRVFPEKGYSFVRFSTHESAAH 76 (109)
T ss_dssp SCSCCHHHHHHHSCSSCCEEEEECCSSCCCHHHHHHHHHHHSC------------EEEEEEETTTTEEEEEESSHHHHHH
T ss_pred cccCCccccccCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEeCCCCEEEEEECCHHHHHH
Confidence 3334444455566788999999999999999999999999997 8888888889999999999999999
Q ss_pred HH-HcCCceecCceEEEecCCCCC
Q 016936 96 AM-ALDGIIFEGVAVRVRRPTDYN 118 (380)
Q Consensus 96 ai-~l~~~~i~g~~i~v~~~~~~~ 118 (380)
|+ .|++..|.|++|+|.|+....
T Consensus 77 A~~~l~g~~~~g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 77 AIVSVNGTTIEGHVVKCYWGKESP 100 (109)
T ss_dssp HHHHHTTCEETTEECEEECCCCCC
T ss_pred HHHHcCCCEECCcEEEEEecCCCC
Confidence 99 899999999999999977653
No 147
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=7.6e-16 Score=117.64 Aligned_cols=79 Identities=16% Similarity=0.153 Sum_probs=70.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCC--CeeCCeEEEE
Q 016936 149 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNG--LKMGDKTLTV 226 (380)
Q Consensus 149 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g--~~~~g~~i~v 226 (380)
....++|||+|||+.+++++|+++|++||.|..|.++++ +|||||+|.+.++|.+|++.|++ ..+.|++|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 344579999999999999999999999999999998754 68999999999999999998865 4599999999
Q ss_pred EEcccCC
Q 016936 227 RRATASS 233 (380)
Q Consensus 227 ~~~~~~~ 233 (380)
.++..+.
T Consensus 86 ~~a~~~~ 92 (104)
T 1wex_A 86 NYSTSKR 92 (104)
T ss_dssp EECSSSS
T ss_pred EEccCcc
Confidence 9997654
No 148
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=7.8e-16 Score=117.38 Aligned_cols=81 Identities=17% Similarity=0.308 Sum_probs=73.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEE
Q 016936 149 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 228 (380)
Q Consensus 149 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~ 228 (380)
....++|||+|||..+++++|+++|++||.| +++.+ .+++++|||||+|.+.++|++|+..|++..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 3456899999999999999999999999977 56666 4789999999999999999999999999999999999999
Q ss_pred cccCC
Q 016936 229 ATASS 233 (380)
Q Consensus 229 ~~~~~ 233 (380)
+.++.
T Consensus 88 a~~~~ 92 (101)
T 2fc9_A 88 QGPRG 92 (101)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 97764
No 149
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=3.2e-16 Score=120.72 Aligned_cols=75 Identities=25% Similarity=0.381 Sum_probs=71.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcc
Q 016936 153 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 230 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~ 230 (380)
.+|||+|||+.+++++|+++|+.| .|..|+|+.++. |+++|||||+|.+.++|++|+ .+|+..+.|+.|+|..+.
T Consensus 17 ~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 17 LYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 689999999999999999999999 899999999975 999999999999999999999 589999999999998874
No 150
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.65 E-value=2e-16 Score=118.21 Aligned_cols=80 Identities=23% Similarity=0.206 Sum_probs=64.4
Q ss_pred cceEEEcCCCCcCcHHHHHHHHHHHH-HhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-Hc-CCceecCce
Q 016936 32 ARRVYVGGLPPLANEQAIATFFSQVM-TAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-AL-DGIIFEGVA 108 (380)
Q Consensus 32 ~~~v~V~nLp~~~t~~~l~~~f~~~G-~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l-~~~~i~g~~ 108 (380)
+++|||+|||+++|+++|+++|++|| .|... ..+.+-..+.++|||||+|.+.++|++|+ .+ ++..+.|++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v------~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~ 74 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREV------RLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQK 74 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBC------CSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEE------EEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEE
Confidence 57999999999999999999999999 54321 11222234567899999999999999999 45 456799999
Q ss_pred EEEecCCCC
Q 016936 109 VRVRRPTDY 117 (380)
Q Consensus 109 i~v~~~~~~ 117 (380)
|+|.++..+
T Consensus 75 i~V~~a~~~ 83 (91)
T 2lxi_A 75 VSMHYSDPK 83 (91)
T ss_dssp EEEECCCSC
T ss_pred EEEEEcCCC
Confidence 999997654
No 151
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=9.9e-16 Score=114.20 Aligned_cols=78 Identities=28% Similarity=0.503 Sum_probs=71.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEc
Q 016936 150 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 229 (380)
Q Consensus 150 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~ 229 (380)
...++|||+|||..+++++|+++|++||.|..|.+. +|||||+|.+.++|++|++.|++..+.|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 445799999999999999999999999999999987 469999999999999999999999999999999999
Q ss_pred ccCCCC
Q 016936 230 TASSGQ 235 (380)
Q Consensus 230 ~~~~~~ 235 (380)
.++...
T Consensus 78 ~~~~~~ 83 (90)
T 2dnq_A 78 KNKSKA 83 (90)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 776443
No 152
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.64 E-value=3.5e-16 Score=125.37 Aligned_cols=79 Identities=18% Similarity=0.286 Sum_probs=74.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCC---eeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEE
Q 016936 150 EGPDRVFVGGLPYYFTETQIKELLESFGT---LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 226 (380)
Q Consensus 150 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~---i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v 226 (380)
...++|||+|||+++|+++|+++|++||. |..|+++.++. |+++|||||+|.+.++|++|++ +++..+.|+.|+|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 44579999999999999999999999999 89999999986 9999999999999999999999 9999999999999
Q ss_pred EEcc
Q 016936 227 RRAT 230 (380)
Q Consensus 227 ~~~~ 230 (380)
.++.
T Consensus 120 ~~a~ 123 (136)
T 2hgl_A 120 FKSH 123 (136)
T ss_dssp EECC
T ss_pred EECC
Confidence 9974
No 153
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=1.8e-15 Score=116.83 Aligned_cols=78 Identities=22% Similarity=0.279 Sum_probs=72.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCC-----eEE
Q 016936 150 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD-----KTL 224 (380)
Q Consensus 150 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-----~~i 224 (380)
....+|||+|||+++++++|+++|++||.|..|.++.+ |||||+|.+.++|++|++.||+..+.| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 44579999999999999999999999999999999865 799999999999999999999999999 999
Q ss_pred EEEEcccCCC
Q 016936 225 TVRRATASSG 234 (380)
Q Consensus 225 ~v~~~~~~~~ 234 (380)
+|.++.++..
T Consensus 86 ~V~~a~~~~~ 95 (108)
T 1x4c_A 86 RVKVDGPRSP 95 (108)
T ss_dssp EEEESSCCSC
T ss_pred EEEeCCCCCC
Confidence 9999987643
No 154
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1e-15 Score=119.46 Aligned_cols=82 Identities=21% Similarity=0.484 Sum_probs=76.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCee--------CC
Q 016936 150 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKM--------GD 221 (380)
Q Consensus 150 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~--------~g 221 (380)
...++|||+|||..+++++|+++|++||.|..|+++.++ ++.++|||||+|.+.++|++|++.|||..+ .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 345799999999999999999999999999999999998 899999999999999999999999999999 67
Q ss_pred eEEEEEEcccC
Q 016936 222 KTLTVRRATAS 232 (380)
Q Consensus 222 ~~i~v~~~~~~ 232 (380)
++|.|.++.++
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 88999998754
No 155
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.64 E-value=7.1e-16 Score=119.07 Aligned_cols=78 Identities=17% Similarity=0.157 Sum_probs=70.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcC-CeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEc
Q 016936 151 GPDRVFVGGLPYYFTETQIKELLESFG-TLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 229 (380)
Q Consensus 151 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~ 229 (380)
...+|||+|||+++++++|+++|++|| .|..+.+.. +.++|||||+|.+.++|++|++.|||..+.|+.|+|.++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 346999999999999999999999999 899998853 347899999999999999999999999999999999998
Q ss_pred ccC
Q 016936 230 TAS 232 (380)
Q Consensus 230 ~~~ 232 (380)
...
T Consensus 103 ~~~ 105 (111)
T 2jvr_A 103 DNP 105 (111)
T ss_dssp CC-
T ss_pred CCC
Confidence 643
No 156
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.64 E-value=3e-16 Score=119.70 Aligned_cols=76 Identities=22% Similarity=0.400 Sum_probs=69.9
Q ss_pred hcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceecCc
Q 016936 29 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 107 (380)
Q Consensus 29 ~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~g~ 107 (380)
....++|||+|||.++++++|+++|++||. |.++.+.+++|||||+|.+.++|.+|+ .+++..+.|+
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~------------i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 91 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGF------------ILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGR 91 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSC------------CSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCC------------EEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 455789999999999999999999999997 677777899999999999999999999 8999999999
Q ss_pred eEEEecCCC
Q 016936 108 AVRVRRPTD 116 (380)
Q Consensus 108 ~i~v~~~~~ 116 (380)
+|+|.|+..
T Consensus 92 ~l~V~~a~~ 100 (101)
T 2la4_A 92 NLRTGWGKE 100 (101)
T ss_dssp ECCCCBCCC
T ss_pred EEEEEeccC
Confidence 999998754
No 157
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.64 E-value=7e-16 Score=116.67 Aligned_cols=87 Identities=13% Similarity=0.264 Sum_probs=68.4
Q ss_pred CCCCCccccchhhhcccceEEEcCCCC-cCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHH
Q 016936 16 FPLMPVQVMTQQATRHARRVYVGGLPP-LANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEAS 94 (380)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~v~V~nLp~-~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~ 94 (380)
.+.+|.+........+.++|||+|||. ++++++|+++|++||. |.++.+ .+|||||+|.+.++|.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~------------v~~v~i--~~g~afV~f~~~~~A~ 71 (97)
T 2xnq_A 6 HHHHHSSGLVPRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGH------------IMQINI--KNAFGFIQFDNPQSVR 71 (97)
T ss_dssp -------------CCTTCEEEEESCCSSCCCHHHHHHHHGGGSC------------EEEEEE--CSSEEEEEESSHHHHH
T ss_pred CCCCCCcccccCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCC------------EEEEEE--eCCEEEEEECCHHHHH
Confidence 344455555667788999999999998 9999999999999997 677766 4899999999999999
Q ss_pred HHH-HcCCceecCceEEEecCCC
Q 016936 95 NAM-ALDGIIFEGVAVRVRRPTD 116 (380)
Q Consensus 95 ~ai-~l~~~~i~g~~i~v~~~~~ 116 (380)
+|+ .+++..+.|++|+|.++..
T Consensus 72 ~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 72 DAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp HHHHHHTTSEETTEECEEEECCC
T ss_pred HHHHHcCCCEECCEEEEEEecCC
Confidence 999 6999999999999998654
No 158
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=1e-15 Score=121.19 Aligned_cols=79 Identities=11% Similarity=0.219 Sum_probs=71.7
Q ss_pred CCCEEEEcCCCCCCCHHHHH----HHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEE
Q 016936 151 GPDRVFVGGLPYYFTETQIK----ELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 226 (380)
Q Consensus 151 ~~~~l~V~nlp~~~t~~~l~----~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v 226 (380)
..++|||+|||+.+++++|+ ++|++||.|..|.+.. +++++|||||+|.+.++|.+|+..|||..+.|++|+|
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 34799999999999999865 7999999999988753 5789999999999999999999999999999999999
Q ss_pred EEcccC
Q 016936 227 RRATAS 232 (380)
Q Consensus 227 ~~~~~~ 232 (380)
.++..+
T Consensus 105 ~~a~~~ 110 (127)
T 2a3j_A 105 TFSETP 110 (127)
T ss_dssp EECCCC
T ss_pred EEccCc
Confidence 999754
No 159
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=5.5e-16 Score=117.59 Aligned_cols=77 Identities=13% Similarity=0.088 Sum_probs=69.5
Q ss_pred CCCEEEEcCCCC-CCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCC--CeeCCeEEEEE
Q 016936 151 GPDRVFVGGLPY-YFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNG--LKMGDKTLTVR 227 (380)
Q Consensus 151 ~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g--~~~~g~~i~v~ 227 (380)
..++|||+|||+ .+++++|+++|++||.|.+|.++++ +|||||+|.+.++|..|++.|++ ..+.|++|+|.
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 457999999999 9999999999999999999999865 47999999999999999999885 46999999999
Q ss_pred EcccCC
Q 016936 228 RATASS 233 (380)
Q Consensus 228 ~~~~~~ 233 (380)
++....
T Consensus 88 ~a~~~~ 93 (102)
T 1x4d_A 88 LSQKYK 93 (102)
T ss_dssp EECCCT
T ss_pred ECCCCC
Confidence 997543
No 160
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.64 E-value=1.8e-16 Score=115.71 Aligned_cols=72 Identities=25% Similarity=0.405 Sum_probs=67.2
Q ss_pred CEEEEcCCCCCC------CHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCe-EEE
Q 016936 153 DRVFVGGLPYYF------TETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDK-TLT 225 (380)
Q Consensus 153 ~~l~V~nlp~~~------t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~-~i~ 225 (380)
++|||+|||..+ ++++|+++|++||.|..+.+++ .+|+++|||||+|.+.++|++|+..|||..+.|+ +|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 589999999999 7799999999999999999884 4799999999999999999999999999999999 887
Q ss_pred E
Q 016936 226 V 226 (380)
Q Consensus 226 v 226 (380)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 161
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.4e-15 Score=112.08 Aligned_cols=75 Identities=21% Similarity=0.403 Sum_probs=69.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHh-CCCeeCCeEEEEEE
Q 016936 150 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL-NGLKMGDKTLTVRR 228 (380)
Q Consensus 150 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l-~g~~~~g~~i~v~~ 228 (380)
...++|||+|||..+++++|+++|++||.|..|.+.++ +|||||+|.+.++|++|+..| ++..+.|++|+|++
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 34579999999999999999999999999999999864 689999999999999999998 99999999999998
Q ss_pred cc
Q 016936 229 AT 230 (380)
Q Consensus 229 ~~ 230 (380)
++
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 162
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.4e-16 Score=122.74 Aligned_cols=91 Identities=19% Similarity=0.178 Sum_probs=73.7
Q ss_pred CCCCccccchhhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHH
Q 016936 17 PLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNA 96 (380)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~a 96 (380)
..+-..........++++|||+|||+++++++|+++|++||. |.++.+.+++|||||+|.+.++|.+|
T Consensus 16 ~~~~~~~~~~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~------------V~~v~i~~~kG~AFVeF~~~e~A~~A 83 (119)
T 2ad9_A 16 PRGSHMGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGK------------VTNLLMLKGKNQAFIEMNTEEAANTM 83 (119)
T ss_dssp ------CCTTSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSC------------CCEEEEEGGGTEEEEECSCHHHHHHH
T ss_pred CcccccccccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------EEEEEEeCCCCEEEEEECCHHHHHHH
Confidence 333344444456677899999999999999999999999998 77777778899999999999999999
Q ss_pred H-HcC--CceecCceEEEecCCCCCc
Q 016936 97 M-ALD--GIIFEGVAVRVRRPTDYNP 119 (380)
Q Consensus 97 i-~l~--~~~i~g~~i~v~~~~~~~~ 119 (380)
+ .++ +..+.|++|+|.++..+..
T Consensus 84 i~~l~~~~~~l~Gr~l~V~~a~~k~~ 109 (119)
T 2ad9_A 84 VNYYTSVTPVLRGQPIYIQFSNHKEL 109 (119)
T ss_dssp HHHHHHHCCCBTTBCCEEEECSSSSC
T ss_pred HHHhccCCceECCeEEEEEEccCCCC
Confidence 9 576 4679999999999876543
No 163
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.2e-15 Score=118.78 Aligned_cols=79 Identities=13% Similarity=0.172 Sum_probs=71.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhC--CCeeCCeEEEEEE
Q 016936 151 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALN--GLKMGDKTLTVRR 228 (380)
Q Consensus 151 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~--g~~~~g~~i~v~~ 228 (380)
..++|||+|||+++++++|+++|++||.|..|.++++ +|||||+|.+.++|++|++.++ +..+.|++|+|.+
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~ 103 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 103 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEE
Confidence 3479999999999999999999999999999999875 6899999999999999999887 4789999999999
Q ss_pred cccCCCC
Q 016936 229 ATASSGQ 235 (380)
Q Consensus 229 ~~~~~~~ 235 (380)
+..+...
T Consensus 104 a~~k~~~ 110 (119)
T 2ad9_A 104 SNHKELK 110 (119)
T ss_dssp CSSSSCC
T ss_pred ccCCCCC
Confidence 9776433
No 164
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.63 E-value=9.3e-16 Score=119.89 Aligned_cols=85 Identities=19% Similarity=0.266 Sum_probs=71.7
Q ss_pred cccchhhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEe------cCCCcEEEEEeCCHHHHHH
Q 016936 22 QVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASN 95 (380)
Q Consensus 22 ~~~~~~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~------~~~~g~afV~f~~~~~a~~ 95 (380)
+...+....+.++|||+|||.++++++|+++|++||.| ..+.+ ..++|||||+|.+.++|++
T Consensus 15 ~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i------------~~v~i~~~~~~g~~~g~afV~f~~~~~a~~ 82 (115)
T 2cpz_A 15 AAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNV------------VSAKVFIDKQTNLSKCFGFVSYDNPVSAQA 82 (115)
T ss_dssp CBSCCCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCC------------SEEEEEECSSSCSEEEEEEEECSSHHHHHH
T ss_pred cCccCcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCe------------EEEEEEECCCCCCcCccEEEEECCHHHHHH
Confidence 34444566788999999999999999999999999984 33433 3446899999999999999
Q ss_pred HH-HcCCceecCceEEEecCCCCC
Q 016936 96 AM-ALDGIIFEGVAVRVRRPTDYN 118 (380)
Q Consensus 96 ai-~l~~~~i~g~~i~v~~~~~~~ 118 (380)
|+ .|++..|.|++|+|.++....
T Consensus 83 A~~~l~g~~~~g~~l~V~~a~~~~ 106 (115)
T 2cpz_A 83 AIQSMNGFQIGMKRLKVQLKRSKN 106 (115)
T ss_dssp HHHHHTTCEETTEECEEECCCCSC
T ss_pred HHHHcCCCEECCEEEEEEEcCCCC
Confidence 99 899999999999999977654
No 165
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.5e-15 Score=115.29 Aligned_cols=79 Identities=33% Similarity=0.532 Sum_probs=72.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEE
Q 016936 149 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 228 (380)
Q Consensus 149 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~ 228 (380)
....++|||+|||..+++++|+++|++||.|..|++.++ +|||||+|.+.++|++|++.|++..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 344579999999999999999999999999999999754 67999999999999999999999999999999999
Q ss_pred cccCC
Q 016936 229 ATASS 233 (380)
Q Consensus 229 ~~~~~ 233 (380)
+.++.
T Consensus 86 a~~~~ 90 (99)
T 2cpj_A 86 ACHSA 90 (99)
T ss_dssp SSCCS
T ss_pred cCCCC
Confidence 97754
No 166
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=6.5e-16 Score=117.30 Aligned_cols=81 Identities=16% Similarity=0.136 Sum_probs=71.3
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-Hc--CCce
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-AL--DGII 103 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l--~~~~ 103 (380)
....++++|||+|||+++++++|+++|++||. |.++.+.+++|||||+|.+.++|.+|+ .+ ++..
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~------------v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~ 77 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGK------------VTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPH 77 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSC------------EEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------EEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCce
Confidence 34456899999999999999999999999998 778888888999999999999999999 55 5678
Q ss_pred ecCceEEEecCCCCCc
Q 016936 104 FEGVAVRVRRPTDYNP 119 (380)
Q Consensus 104 i~g~~i~v~~~~~~~~ 119 (380)
+.|++|+|.++.....
T Consensus 78 ~~Gr~l~V~~a~~~~~ 93 (101)
T 2cq1_A 78 LRNQPIYIQYSNHKEL 93 (101)
T ss_dssp ETTEECEEEECSCSSC
T ss_pred ECCcEEEEEEcCcccC
Confidence 9999999999876543
No 167
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=2.3e-15 Score=112.19 Aligned_cols=77 Identities=29% Similarity=0.417 Sum_probs=70.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEc
Q 016936 150 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 229 (380)
Q Consensus 150 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~ 229 (380)
...++|||+|||..+++++|+++|++||.|..|++.++ ||||+|.+.++|++|++.|++..+.|+.|+|.++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 34579999999999999999999999999999999743 9999999999999999999999999999999999
Q ss_pred ccCCC
Q 016936 230 TASSG 234 (380)
Q Consensus 230 ~~~~~ 234 (380)
.+...
T Consensus 79 ~~~~~ 83 (90)
T 2dnp_A 79 TKGQK 83 (90)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 77643
No 168
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.1e-15 Score=115.58 Aligned_cols=77 Identities=21% Similarity=0.347 Sum_probs=70.8
Q ss_pred hcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceec--
Q 016936 29 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFE-- 105 (380)
Q Consensus 29 ~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~-- 105 (380)
..+.++|||+|||.++++++|+++|++||. |.++.+..++|||||+|.+.++|++|+ .+|+..+.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~ 81 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGS------------IRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGP 81 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSC------------EEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------eeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCC
Confidence 456799999999999999999999999997 788888888999999999999999999 69999999
Q ss_pred CceEEEecCCCC
Q 016936 106 GVAVRVRRPTDY 117 (380)
Q Consensus 106 g~~i~v~~~~~~ 117 (380)
|++|+|.++...
T Consensus 82 g~~l~V~~a~~~ 93 (97)
T 1why_A 82 DRRLRVDFAKSG 93 (97)
T ss_dssp SCBCEEEECCCC
T ss_pred CcEEEEEECCCC
Confidence 999999997654
No 169
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.8e-15 Score=115.51 Aligned_cols=83 Identities=27% Similarity=0.393 Sum_probs=74.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEE
Q 016936 149 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 228 (380)
Q Consensus 149 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~ 228 (380)
....++|||+|||..+++++|+++|+.|+ .+.++.++.++.++|||||+|.+.++|++|++.|++..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34457999999999999999999999773 677888877899999999999999999999999999999999999999
Q ss_pred cccCCC
Q 016936 229 ATASSG 234 (380)
Q Consensus 229 ~~~~~~ 234 (380)
+.++..
T Consensus 89 a~~~~~ 94 (102)
T 2fc8_A 89 AKPKGE 94 (102)
T ss_dssp CCCCCS
T ss_pred ecCCCC
Confidence 987643
No 170
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=7.1e-16 Score=117.82 Aligned_cols=79 Identities=18% Similarity=0.157 Sum_probs=69.7
Q ss_pred hcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCC--ceec
Q 016936 29 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDG--IIFE 105 (380)
Q Consensus 29 ~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~--~~i~ 105 (380)
..++++|||+|||+++++++|+++|++||. |.++.+.+++|||||+|.+.++|.+|+ .+++ ..+.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~------------V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~ 79 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGT------------ICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIA 79 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSC------------EEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCC------------EEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 345799999999999999999999999997 778888888999999999999999999 5765 4599
Q ss_pred CceEEEecCCCCCc
Q 016936 106 GVAVRVRRPTDYNP 119 (380)
Q Consensus 106 g~~i~v~~~~~~~~ 119 (380)
|++|+|.++..+..
T Consensus 80 Gr~l~V~~a~~~~~ 93 (104)
T 1wex_A 80 GQQAFFNYSTSKRI 93 (104)
T ss_dssp SSBCEEEECSSSSC
T ss_pred CEEEEEEEccCccc
Confidence 99999999876543
No 171
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.63 E-value=2.4e-15 Score=114.63 Aligned_cols=83 Identities=20% Similarity=0.421 Sum_probs=74.2
Q ss_pred hhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHHHcCCceecCc
Q 016936 28 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGV 107 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai~l~~~~i~g~ 107 (380)
.....++|||+|||.++++++|+++|++||.+... .+.+...+.++|||||+|.+.++|.+|+++++..|.|+
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~-------~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~ 85 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDL-------AVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGN 85 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-------CCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTB
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceE-------EEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCc
Confidence 34567899999999999999999999999998651 36677788999999999999999999999999999999
Q ss_pred eEEEecCCCC
Q 016936 108 AVRVRRPTDY 117 (380)
Q Consensus 108 ~i~v~~~~~~ 117 (380)
+|+|.++..+
T Consensus 86 ~l~V~~a~~~ 95 (101)
T 1fj7_A 86 EIKLEKPKGR 95 (101)
T ss_dssp CCEEECCSCC
T ss_pred EEEEEEcCCC
Confidence 9999997654
No 172
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=3.6e-15 Score=111.59 Aligned_cols=77 Identities=21% Similarity=0.357 Sum_probs=70.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEc
Q 016936 150 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 229 (380)
Q Consensus 150 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~ 229 (380)
...++|||+|||..+++++|+++|++||.|..|.+.++ ||||+|.+.++|++|+..||+..+.|+.|+|.++
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 34479999999999999999999999999999999743 9999999999999999999999999999999999
Q ss_pred ccCCC
Q 016936 230 TASSG 234 (380)
Q Consensus 230 ~~~~~ 234 (380)
.++..
T Consensus 80 ~~~~~ 84 (92)
T 2dgt_A 80 TSRLR 84 (92)
T ss_dssp SCCCS
T ss_pred cCCCC
Confidence 77643
No 173
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.1e-15 Score=118.27 Aligned_cols=78 Identities=13% Similarity=0.097 Sum_probs=71.3
Q ss_pred CEEEEcCC----CCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcC----hhH----HHHHHH--HhCCCe
Q 016936 153 DRVFVGGL----PYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQD----PAV----TDIACA--ALNGLK 218 (380)
Q Consensus 153 ~~l~V~nl----p~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~----~~~----A~~Ai~--~l~g~~ 218 (380)
..|||+|| |+.+++++|+++|++||.|.+|.++.|+.+|+++|||||+|.+ +++ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 9999999999999999999999999999999999999999996 433 889988 789999
Q ss_pred eCCeEEEEEEcc
Q 016936 219 MGDKTLTVRRAT 230 (380)
Q Consensus 219 ~~g~~i~v~~~~ 230 (380)
|.|+.|+|..-.
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999754
No 174
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.62 E-value=2.8e-16 Score=121.23 Aligned_cols=80 Identities=16% Similarity=0.270 Sum_probs=74.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCC---eeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEE
Q 016936 149 AEGPDRVFVGGLPYYFTETQIKELLESFGT---LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 225 (380)
Q Consensus 149 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~---i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~ 225 (380)
.....+|||+|||+++++++|+++|+.||. |..|+++.++. |+++|||||+|.+.++|++|+. +++..+.|+.|+
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 344579999999999999999999999998 89999999986 9999999999999999999999 899999999999
Q ss_pred EEEcc
Q 016936 226 VRRAT 230 (380)
Q Consensus 226 v~~~~ 230 (380)
|.++.
T Consensus 86 V~~a~ 90 (107)
T 2lmi_A 86 VYEIN 90 (107)
T ss_dssp CEECC
T ss_pred EEECC
Confidence 99985
No 175
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.62 E-value=1.5e-15 Score=112.45 Aligned_cols=85 Identities=46% Similarity=0.810 Sum_probs=72.3
Q ss_pred hcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHHHcCCceecCce
Q 016936 29 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVA 108 (380)
Q Consensus 29 ~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai~l~~~~i~g~~ 108 (380)
+++.++|||+|||+++++++|+++|++||.+.+... .+...|.++.+.+++|||||+|.+.++|.+|+.+++..+.|++
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~-~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~~l~g~~~~g~~ 81 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQ-APGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQS 81 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCS-SSSCSEEEEEECSSSSEEEEEESSHHHHHHHGGGTTCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhccccc-CCCCcceEEEecCCCcEEEEEcCCHHHHHHHHhcCCCEECCeE
Confidence 467899999999999999999999999965433111 1122489999999999999999999999999999999999999
Q ss_pred EEEecC
Q 016936 109 VRVRRP 114 (380)
Q Consensus 109 i~v~~~ 114 (380)
|+|.++
T Consensus 82 l~V~rp 87 (87)
T 2hzc_A 82 LKIRRP 87 (87)
T ss_dssp CEEECC
T ss_pred EEEeCC
Confidence 999763
No 176
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=3.2e-15 Score=113.07 Aligned_cols=77 Identities=26% Similarity=0.526 Sum_probs=71.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeC--CeEEEEEE
Q 016936 151 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG--DKTLTVRR 228 (380)
Q Consensus 151 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~--g~~i~v~~ 228 (380)
..++|||+|||..+++++|+++|++||.|..|.+..+ +|||||+|.+.++|++|++.||+..+. |+.|+|.+
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 4479999999999999999999999999999998754 679999999999999999999999999 99999999
Q ss_pred cccCC
Q 016936 229 ATASS 233 (380)
Q Consensus 229 ~~~~~ 233 (380)
+.++.
T Consensus 90 a~~~~ 94 (97)
T 1why_A 90 AKSGP 94 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 97753
No 177
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.62 E-value=1.5e-16 Score=121.40 Aligned_cols=82 Identities=20% Similarity=0.335 Sum_probs=74.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcc
Q 016936 151 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 230 (380)
Q Consensus 151 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~ 230 (380)
..++|||+|||+.+++++|+++|++||.|.. .++.++.+++++|||||+|.+.++|++|++ |++..+.|+.|+|.++.
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 4579999999999999999999999999888 566665678999999999999999999999 99999999999999997
Q ss_pred cCCC
Q 016936 231 ASSG 234 (380)
Q Consensus 231 ~~~~ 234 (380)
++..
T Consensus 94 ~~~~ 97 (101)
T 1fj7_A 94 GRDG 97 (101)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 178
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=4.3e-16 Score=119.93 Aligned_cols=80 Identities=24% Similarity=0.314 Sum_probs=70.9
Q ss_pred hhhcccceEEEcCCCCc-CcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcC--Cc
Q 016936 27 QATRHARRVYVGGLPPL-ANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALD--GI 102 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~-~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~--~~ 102 (380)
....++++|||+|||++ +++++|+++|++||. |.++.+.+++|||||+|.+.++|++|+ .++ +.
T Consensus 20 ~~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~------------V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~ 87 (112)
T 1x4f_A 20 QKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGK------------IKNYILMRMKSQAFIEMETREDAMAMVDHCLKKAL 87 (112)
T ss_dssp CSSCCCCEEEEESCCCSSCCSHHHHTTTTTTSC------------CSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCC
T ss_pred ccCCCCCEEEEeCCCCccCCHHHHHHHHHhcCC------------EEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCc
Confidence 45678999999999998 999999999999998 777888889999999999999999999 665 46
Q ss_pred eecCceEEEecCCCCC
Q 016936 103 IFEGVAVRVRRPTDYN 118 (380)
Q Consensus 103 ~i~g~~i~v~~~~~~~ 118 (380)
.|.|++|+|.++..+.
T Consensus 88 ~l~Gr~l~V~~a~~~~ 103 (112)
T 1x4f_A 88 WFQGRCVKVDLSEKYK 103 (112)
T ss_dssp CSSSSCCEEEEECSCS
T ss_pred eECCEEEEEEECcccc
Confidence 6999999999976543
No 179
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=6.8e-16 Score=122.37 Aligned_cols=82 Identities=18% Similarity=0.309 Sum_probs=74.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEE
Q 016936 149 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 228 (380)
Q Consensus 149 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~ 228 (380)
.....+|||+|||+.+++++|+++|+.||.|..+.++.+..+++++|||||+|.+.++|++|+. +|+..+.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3445799999999999999999999999999886666665689999999999999999999999 999999999999999
Q ss_pred ccc
Q 016936 229 ATA 231 (380)
Q Consensus 229 ~~~ 231 (380)
+..
T Consensus 101 a~~ 103 (124)
T 1wel_A 101 ITK 103 (124)
T ss_dssp ECH
T ss_pred CCH
Confidence 853
No 180
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=3.5e-16 Score=118.71 Aligned_cols=78 Identities=22% Similarity=0.232 Sum_probs=70.4
Q ss_pred hcccceEEEcCCCC-cCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCC--cee
Q 016936 29 TRHARRVYVGGLPP-LANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDG--IIF 104 (380)
Q Consensus 29 ~~~~~~v~V~nLp~-~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~--~~i 104 (380)
..++++|||+|||+ +++++||+++|++||. |.++.+.+++|||||+|.+.++|..|+ .+++ ..|
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~------------V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~ 79 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGV------------ISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALV 79 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSC------------EEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCC------------EEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceE
Confidence 45789999999999 9999999999999998 888888899999999999999999999 6775 459
Q ss_pred cCceEEEecCCCCC
Q 016936 105 EGVAVRVRRPTDYN 118 (380)
Q Consensus 105 ~g~~i~v~~~~~~~ 118 (380)
.|++|+|.++..+.
T Consensus 80 ~Gr~l~V~~a~~~~ 93 (102)
T 1x4d_A 80 FGKPVRVHLSQKYK 93 (102)
T ss_dssp TTEECEEEEECCCT
T ss_pred CCcEEEEEECCCCC
Confidence 99999999987543
No 181
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.62 E-value=4.1e-15 Score=113.77 Aligned_cols=78 Identities=19% Similarity=0.314 Sum_probs=71.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEc
Q 016936 150 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 229 (380)
Q Consensus 150 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~ 229 (380)
...++|||+|||..+++++|+++|++||.|..|++++ |||||+|.+.++|++|++.|++..+.|+.|.|.++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 3457999999999999999999999999999999863 49999999999999999999999999999999999
Q ss_pred ccCCCC
Q 016936 230 TASSGQ 235 (380)
Q Consensus 230 ~~~~~~ 235 (380)
.+....
T Consensus 81 ~~~~~~ 86 (103)
T 2dgu_A 81 KPPDQK 86 (103)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 876544
No 182
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=3.9e-15 Score=113.87 Aligned_cols=80 Identities=26% Similarity=0.382 Sum_probs=70.5
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecC----CCcEEEEEeCCHHHHHHHH-HcCC
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH----EKKFAFVEMRTVEEASNAM-ALDG 101 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~----~~g~afV~f~~~~~a~~ai-~l~~ 101 (380)
......++|||+|||+.+++++|+++|++||. |..+.+.. ++|||||+|.+.++|.+|+ .+++
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 77 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGP------------CKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNG 77 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSC------------EEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCC------------EeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCC
Confidence 34567899999999999999999999999998 66666644 5799999999999999999 6999
Q ss_pred ceecCceEEEecCCCCC
Q 016936 102 IIFEGVAVRVRRPTDYN 118 (380)
Q Consensus 102 ~~i~g~~i~v~~~~~~~ 118 (380)
..|.|++|+|.++....
T Consensus 78 ~~~~g~~l~V~~a~~~~ 94 (103)
T 2cqi_A 78 RKILGKEVKVNWATTPS 94 (103)
T ss_dssp EEETTEEEEEEECCCTT
T ss_pred CCcCCCeEEEEECCCCc
Confidence 99999999999976643
No 183
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.62 E-value=1.9e-15 Score=116.55 Aligned_cols=77 Identities=18% Similarity=0.446 Sum_probs=71.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEE
Q 016936 149 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 228 (380)
Q Consensus 149 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~ 228 (380)
....++|||+|||..+++++|+++|++||.|..|.+. +|||||+|.+.++|++|+..|+|..+.|+.|.|.+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3455899999999999999999999999999999987 57999999999999999999999999999999999
Q ss_pred cccCC
Q 016936 229 ATASS 233 (380)
Q Consensus 229 ~~~~~ 233 (380)
+.+..
T Consensus 100 a~~~~ 104 (108)
T 2jvo_A 100 SKLPA 104 (108)
T ss_dssp CSCCC
T ss_pred ecCCC
Confidence 87653
No 184
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.9e-15 Score=115.88 Aligned_cols=78 Identities=18% Similarity=0.379 Sum_probs=72.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcc
Q 016936 151 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 230 (380)
Q Consensus 151 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~ 230 (380)
..++|||+|||..+++++|+++|++||.|..|++..+ +|||||+|.+.++|++|+..|++..+.|+.|+|.++.
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 97 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecC
Confidence 3479999999999999999999999999999999875 6799999999999999999999999999999999998
Q ss_pred cCCC
Q 016936 231 ASSG 234 (380)
Q Consensus 231 ~~~~ 234 (380)
++..
T Consensus 98 ~~~~ 101 (109)
T 1x4g_A 98 ESPD 101 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7643
No 185
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.62 E-value=1e-15 Score=134.31 Aligned_cols=81 Identities=17% Similarity=0.334 Sum_probs=76.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcC--CeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEE
Q 016936 151 GPDRVFVGGLPYYFTETQIKELLESFG--TLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 228 (380)
Q Consensus 151 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~ 228 (380)
..++|||+|||+.+++++|+++|++|| .|..|+|++++.+++++|||||+|.+.++|++||+.||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 456899999999999999999999999 999999999988999999999999999999999999999999999999999
Q ss_pred ccc
Q 016936 229 ATA 231 (380)
Q Consensus 229 ~~~ 231 (380)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 853
No 186
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.61 E-value=1.3e-15 Score=119.74 Aligned_cols=76 Identities=18% Similarity=0.270 Sum_probs=68.0
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec------CCCcEEEEEeCCHHHHHHHH-Hc
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN------HEKKFAFVEMRTVEEASNAM-AL 99 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~------~~~g~afV~f~~~~~a~~ai-~l 99 (380)
....+.++|||+|||+++++++|+++|++||. |.++.+. +++|||||+|.+.++|++|+ .+
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 102 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGN------------VISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAM 102 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCE------------EEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------EEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHc
Confidence 45677899999999999999999999999997 6666654 45799999999999999999 79
Q ss_pred CCceecCceEEEecC
Q 016936 100 DGIIFEGVAVRVRRP 114 (380)
Q Consensus 100 ~~~~i~g~~i~v~~~ 114 (380)
|+..|.|++|+|.++
T Consensus 103 ~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 103 NGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCCEETTEECCEEEC
T ss_pred CCCEECCEEEEEEec
Confidence 999999999999875
No 187
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=4.5e-16 Score=120.40 Aligned_cols=90 Identities=22% Similarity=0.316 Sum_probs=71.1
Q ss_pred CCCCCccccchhhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec----CCCcEEEEEeCCHH
Q 016936 16 FPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN----HEKKFAFVEMRTVE 91 (380)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~----~~~g~afV~f~~~~ 91 (380)
.+.++...+........++|||+|||.++++++|+++|++||. |..+.+. .++|||||+|.+.+
T Consensus 13 ~~~~~~~S~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~------------i~~v~i~~~~~~~kg~afV~f~~~~ 80 (109)
T 2err_A 13 GLVPRGSHMNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGK------------ILDVEIIFNERGSKGFGFVTFENSA 80 (109)
T ss_dssp ---------CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCC------------CSCEEECCBTTBCTTEEEEECCCSH
T ss_pred CCCCCCCCCCccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCC------------EEEEEEEECCCCCceEEEEEECCHH
Confidence 3444455566677888999999999999999999999999998 4445543 34899999999999
Q ss_pred HHHHHH-HcCCceecCceEEEecCCCC
Q 016936 92 EASNAM-ALDGIIFEGVAVRVRRPTDY 117 (380)
Q Consensus 92 ~a~~ai-~l~~~~i~g~~i~v~~~~~~ 117 (380)
+|++|+ .+++..+.|++|+|.++..+
T Consensus 81 ~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 107 (109)
T 2err_A 81 DADRAREKLHGTVVEGRKIEVNNATAR 107 (109)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred HHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 999999 69999999999999997643
No 188
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=6e-16 Score=120.99 Aligned_cols=86 Identities=20% Similarity=0.261 Sum_probs=73.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEc
Q 016936 150 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 229 (380)
Q Consensus 150 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~ 229 (380)
...++|||+|||..+++++|+++|++||.|..+.+..+..+++++|||||+|.+.++|++|+..|++..+.|+.|+|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 34579999999999999999999999999954433322236889999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 016936 230 TASSGQ 235 (380)
Q Consensus 230 ~~~~~~ 235 (380)
.++...
T Consensus 103 ~~~~~~ 108 (115)
T 2cpx_A 103 KNKKQR 108 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCC
Confidence 876543
No 189
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.61 E-value=1.2e-15 Score=115.47 Aligned_cols=79 Identities=14% Similarity=0.362 Sum_probs=73.1
Q ss_pred CCCEEEEcCCCCCCCHHHHH----HHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEE
Q 016936 151 GPDRVFVGGLPYYFTETQIK----ELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 226 (380)
Q Consensus 151 ~~~~l~V~nlp~~~t~~~l~----~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v 226 (380)
..++|||+|||..+++++|+ ++|++||.|..|.+.+ ++.++|||||+|.+.++|++|+..|+|..+.|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34799999999999999999 9999999999998874 4778899999999999999999999999999999999
Q ss_pred EEcccC
Q 016936 227 RRATAS 232 (380)
Q Consensus 227 ~~~~~~ 232 (380)
.++.+.
T Consensus 84 ~~a~~~ 89 (97)
T 1nu4_A 84 QYAKTD 89 (97)
T ss_dssp EECSSC
T ss_pred EEccCC
Confidence 999765
No 190
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.7e-15 Score=115.43 Aligned_cols=75 Identities=20% Similarity=0.401 Sum_probs=69.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcc
Q 016936 151 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 230 (380)
Q Consensus 151 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~ 230 (380)
..++|||+|||..+++++|+++|++||.|..+++. +++|||||+|.+.++|.+|+..|+|..+.|+.|+|.++.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 34799999999999999999999999999999987 347899999999999999999999999999999999986
Q ss_pred c
Q 016936 231 A 231 (380)
Q Consensus 231 ~ 231 (380)
+
T Consensus 100 ~ 100 (101)
T 2la4_A 100 E 100 (101)
T ss_dssp C
T ss_pred C
Confidence 5
No 191
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=5.7e-15 Score=115.38 Aligned_cols=85 Identities=15% Similarity=0.260 Sum_probs=71.8
Q ss_pred hhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceecC
Q 016936 28 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 106 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~g 106 (380)
...+.++|||+|||.++++++|+++|++||.|... .........+++|||||+|.+.++|.+|+ .|++..|.|
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~------~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 94 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGP------PIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYG 94 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSS------CCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccce------EEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 34577999999999999999999999999996431 11334445678899999999999999999 799999999
Q ss_pred ceEEEecCCCCC
Q 016936 107 VAVRVRRPTDYN 118 (380)
Q Consensus 107 ~~i~v~~~~~~~ 118 (380)
++|+|.++....
T Consensus 95 ~~l~v~~a~~~~ 106 (115)
T 2cpx_A 95 KILVIEFGKNKK 106 (115)
T ss_dssp CBCEEEECCCCS
T ss_pred cEEEEEEccCCC
Confidence 999999987653
No 192
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1e-15 Score=112.76 Aligned_cols=75 Identities=21% Similarity=0.357 Sum_probs=69.2
Q ss_pred hhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-Hc-CCceec
Q 016936 28 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-AL-DGIIFE 105 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l-~~~~i~ 105 (380)
.....++|||+|||.++++++|+++|++||. |..+.+.+++|||||+|.+.++|.+|+ .+ ++..+.
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~------------i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~ 75 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGE------------IRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVN 75 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSC------------EEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEET
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCC------------EeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeEC
Confidence 3456799999999999999999999999987 788888889999999999999999999 58 999999
Q ss_pred CceEEEecC
Q 016936 106 GVAVRVRRP 114 (380)
Q Consensus 106 g~~i~v~~~ 114 (380)
|++|+|.|+
T Consensus 76 g~~l~v~~a 84 (85)
T 2ytc_A 76 GRRLNVKWG 84 (85)
T ss_dssp TEECCEEEC
T ss_pred CCEEEEEec
Confidence 999999985
No 193
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=6.4e-16 Score=119.92 Aligned_cols=77 Identities=21% Similarity=0.156 Sum_probs=71.7
Q ss_pred hhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceecC
Q 016936 28 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 106 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~g 106 (380)
..+..++|||+|||+++++++|+++|++||. |..+.+.+++|||||+|.+.++|++|+ .||+..+.|
T Consensus 6 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~------------i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 73 (111)
T 1whx_A 6 SGRSKTVILAKNLPAGTLAAEIQETFSRFGS------------LGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHH 73 (111)
T ss_dssp TSEEEEEEEEESCCTTCCHHHHHHHHHTTSC------------EEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------EEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 4567899999999999999999999999997 788888889999999999999999999 799999999
Q ss_pred ceEEEecCCC
Q 016936 107 VAVRVRRPTD 116 (380)
Q Consensus 107 ~~i~v~~~~~ 116 (380)
++|+|.|+..
T Consensus 74 ~~l~V~~a~~ 83 (111)
T 1whx_A 74 VPLYLEWAPI 83 (111)
T ss_dssp SBCEEEEEET
T ss_pred eEEEEEECCC
Confidence 9999999754
No 194
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.61 E-value=1.2e-15 Score=118.02 Aligned_cols=77 Identities=14% Similarity=0.061 Sum_probs=68.0
Q ss_pred cccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEe------cCCCcEEEEEeCCHHHHHHHH-HcCCc
Q 016936 30 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASNAM-ALDGI 102 (380)
Q Consensus 30 ~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~------~~~~g~afV~f~~~~~a~~ai-~l~~~ 102 (380)
.+.++|||+|||+++++++|+++|++||. |.++.+ ++++|||||+|.+.++|.+|+ .||+.
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~------------i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~ 71 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGE------------VEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLT 71 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSC------------EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCC------------eeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCC
Confidence 45789999999999999999999999998 555554 456799999999999999999 79999
Q ss_pred eecCceEEEecCCCCC
Q 016936 103 IFEGVAVRVRRPTDYN 118 (380)
Q Consensus 103 ~i~g~~i~v~~~~~~~ 118 (380)
.+.|++|+|.++....
T Consensus 72 ~~~gr~i~V~~a~~~~ 87 (110)
T 3s8s_A 72 SVMGNIIHAQLDIKGQ 87 (110)
T ss_dssp EETTEECEEEECSTTH
T ss_pred EECCeEEEEEECCCCc
Confidence 9999999999876543
No 195
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=3.1e-15 Score=113.13 Aligned_cols=78 Identities=28% Similarity=0.433 Sum_probs=70.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEc
Q 016936 150 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 229 (380)
Q Consensus 150 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~ 229 (380)
...++|||+|||+.+++++|+++|++||.|. +.++. ++++|||||+|.+.++|++|++.|||..+.|+.|+|.++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3457999999999999999999999999997 66664 467899999999999999999999999999999999998
Q ss_pred ccC
Q 016936 230 TAS 232 (380)
Q Consensus 230 ~~~ 232 (380)
.++
T Consensus 92 ~~~ 94 (97)
T 2e5j_A 92 RQQ 94 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 196
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=5e-15 Score=114.53 Aligned_cols=80 Identities=29% Similarity=0.499 Sum_probs=70.3
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecC---CCcEEEEEeCCHHHHHHHH-HcCCc
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH---EKKFAFVEMRTVEEASNAM-ALDGI 102 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~---~~g~afV~f~~~~~a~~ai-~l~~~ 102 (380)
....+.++|||+|||.++++++|+++|++||. |..+.+.. ++|||||+|.+.++|++|+ .+++.
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~------------v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 84 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGA------------IRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 84 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSC------------EEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCC
Confidence 45567899999999999999999999999998 56666543 5789999999999999999 89999
Q ss_pred eecCceEEEecCCCCC
Q 016936 103 IFEGVAVRVRRPTDYN 118 (380)
Q Consensus 103 ~i~g~~i~v~~~~~~~ 118 (380)
.|.|++|+|.++....
T Consensus 85 ~~~g~~l~V~~a~~~~ 100 (109)
T 1x4a_A 85 DYDGYRLRVEFPRSGR 100 (109)
T ss_dssp EETTEECEEECCCCCC
T ss_pred EECCeEEEEEEcccCC
Confidence 9999999999976643
No 197
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=1.7e-15 Score=115.56 Aligned_cols=76 Identities=20% Similarity=0.375 Sum_probs=71.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 016936 153 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 232 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~ 232 (380)
++|||+|||.++++++|+++|++||.|..|.++.+ ++|||||+|.+.++|++|++.|++..+.|+.|+|.++.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 37999999999999999999999999999999876 6889999999999999999999999999999999999775
Q ss_pred C
Q 016936 233 S 233 (380)
Q Consensus 233 ~ 233 (380)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 198
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.60 E-value=1.2e-15 Score=116.48 Aligned_cols=79 Identities=29% Similarity=0.586 Sum_probs=74.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEccc
Q 016936 152 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 231 (380)
Q Consensus 152 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~ 231 (380)
.++|||+|||..+++++|+++|++||.|..|+++.++ ++.++|||||+|.+.++|++|+. ++..+.|+.|.|.++..
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 9 PNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCc
Confidence 3699999999999999999999999999999999998 89999999999999999999999 89999999999999876
Q ss_pred CC
Q 016936 232 SS 233 (380)
Q Consensus 232 ~~ 233 (380)
+.
T Consensus 86 ~~ 87 (102)
T 2xs2_A 86 KQ 87 (102)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 199
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.60 E-value=1.3e-15 Score=117.45 Aligned_cols=80 Identities=24% Similarity=0.316 Sum_probs=68.4
Q ss_pred cchhhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCc
Q 016936 24 MTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGI 102 (380)
Q Consensus 24 ~~~~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~ 102 (380)
..+..+...++|||+|||.++++++|+++|++||. |..+.+. +|||||+|.+.++|++|+ .+++.
T Consensus 23 ~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~------------i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~ 88 (108)
T 2jvo_A 23 HRQEGELSNTRLFVRPFPLDVQESELNEIFGPFGP------------MKEVKIL--NGFAFVEFEEAESAAKAIEEVHGK 88 (108)
T ss_dssp -----CCSCSEEEECSSCTTCCHHHHHHHHTTTSC------------CCEEEEE--TTEEEEECSSHHHHHHHHHHHTTC
T ss_pred cccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCC------------EEEEEEE--CCEEEEEECCHHHHHHHHHHcCCC
Confidence 33456788999999999999999999999999998 5555555 899999999999999999 79999
Q ss_pred eecCceEEEecCCCC
Q 016936 103 IFEGVAVRVRRPTDY 117 (380)
Q Consensus 103 ~i~g~~i~v~~~~~~ 117 (380)
.+.|++|+|.++...
T Consensus 89 ~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 89 SFANQPLEVVYSKLP 103 (108)
T ss_dssp EETTEECEEESCSCC
T ss_pred EECCeEEEEEEecCC
Confidence 999999999997654
No 200
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.5e-15 Score=112.68 Aligned_cols=79 Identities=23% Similarity=0.394 Sum_probs=69.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCC-eeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCC-CeeCCeEEEEE
Q 016936 150 EGPDRVFVGGLPYYFTETQIKELLESFGT-LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNG-LKMGDKTLTVR 227 (380)
Q Consensus 150 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~-i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g-~~~~g~~i~v~ 227 (380)
...++|||+|||..+++++|+++|++||. |..+.+. ++|||||+|.+.++|++|++.||+ ..+.|+.|+|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 44579999999999999999999999999 6666653 367999999999999999999999 99999999999
Q ss_pred EcccCCCC
Q 016936 228 RATASSGQ 235 (380)
Q Consensus 228 ~~~~~~~~ 235 (380)
++.++...
T Consensus 79 ~a~~~~~~ 86 (93)
T 2cqh_A 79 YSVSKKLR 86 (93)
T ss_dssp ECCCCCCC
T ss_pred EccCcccc
Confidence 99876433
No 201
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.60 E-value=2.2e-15 Score=116.33 Aligned_cols=78 Identities=18% Similarity=0.205 Sum_probs=67.4
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHH-HhccCCCCCCCCeeEEEEec--CCCcEEEEEeCCHHHHHHHH-HcCCc
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVM-TAIGGNSAGPGDAVVNVYIN--HEKKFAFVEMRTVEEASNAM-ALDGI 102 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G-~i~~~~~~~~~~~i~~~~~~--~~~g~afV~f~~~~~a~~ai-~l~~~ 102 (380)
......++|||+|||+++++++|+++|++|| . |..+.+. .++|||||+|.+.++|++|+ .+|+.
T Consensus 23 ~~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~------------v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~ 90 (111)
T 2jvr_A 23 KLPAKRYRITMKNLPEGCSWQDLKDLARENSLE------------TTFSSVNTRDFDGTGALEFPSEEILVEALERLNNI 90 (111)
T ss_dssp --CCCCEEEEEECSSCCCCHHHHHHHHHHHTCC------------CSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHhCCe------------eEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCC
Confidence 3445678999999999999999999999999 6 4555553 57899999999999999999 79999
Q ss_pred eecCceEEEecCCC
Q 016936 103 IFEGVAVRVRRPTD 116 (380)
Q Consensus 103 ~i~g~~i~v~~~~~ 116 (380)
.+.|++|+|.++..
T Consensus 91 ~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 91 EFRGSVITVERDDN 104 (111)
T ss_dssp EETTEEEEEEESCC
T ss_pred EECCeEEEEEECCC
Confidence 99999999998654
No 202
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.60 E-value=3.7e-16 Score=117.32 Aligned_cols=80 Identities=20% Similarity=0.344 Sum_probs=67.2
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEE------ecCCCcEEEEEeCCHHHHHHHH-Hc
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY------INHEKKFAFVEMRTVEEASNAM-AL 99 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~------~~~~~g~afV~f~~~~~a~~ai-~l 99 (380)
.......||||+|||+.+|+++|+++|++||.+. +.+++ .++++|||||+|.+.++|++|+ .+
T Consensus 4 ~~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~----------v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~l 73 (95)
T 2lkz_A 4 HHHHHMDTIILRNIAPHTVVDSIMTALSPYASLA----------VNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQIL 73 (95)
T ss_dssp CSSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCC----------GGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHH
T ss_pred ccCCccCEEEEeCCCCcCCHHHHHHHHHhhCCcc----------EEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHh
Confidence 4566788999999999999999999999999631 23333 3567899999999999999999 78
Q ss_pred CCc----eecCceEEEecCCC
Q 016936 100 DGI----IFEGVAVRVRRPTD 116 (380)
Q Consensus 100 ~~~----~i~g~~i~v~~~~~ 116 (380)
|+. .+.|++|.|.++.+
T Consensus 74 ng~~~~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 74 QSLHPPLKIDGKTIGVDFAKS 94 (95)
T ss_dssp HSSSSCEEETTEEEEEEECCC
T ss_pred cCCCCCceECCEEEEEEEccC
Confidence 886 58999999999764
No 203
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=8.3e-16 Score=116.78 Aligned_cols=79 Identities=28% Similarity=0.476 Sum_probs=72.2
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceec
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFE 105 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~ 105 (380)
....+.++|||+|||+.+++++|+++|++||. |..+.+.+++|||||+|.+.++|.+|+ .+++..|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~ 77 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGK------------AGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLR 77 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCC------------CSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBT
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCC------------eEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 34467799999999999999999999999987 777888889999999999999999999 89999999
Q ss_pred CceEEEecCCCC
Q 016936 106 GVAVRVRRPTDY 117 (380)
Q Consensus 106 g~~i~v~~~~~~ 117 (380)
|++|+|.++...
T Consensus 78 g~~l~v~~a~~~ 89 (99)
T 2cpj_A 78 GKQLRVRFACHS 89 (99)
T ss_dssp TBCCEEEESSCC
T ss_pred CceEEEEEcCCC
Confidence 999999997654
No 204
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=3.6e-15 Score=112.76 Aligned_cols=79 Identities=20% Similarity=0.272 Sum_probs=69.2
Q ss_pred hhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceecC
Q 016936 28 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 106 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~g 106 (380)
.....++|||+|||+++++++|+++|++||.|. ..+....++|||||+|.+.++|++|+ .||+..|.|
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-----------~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 83 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-----------LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGT 83 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-----------SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSS
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-----------EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 345678999999999999999999999999851 23445688999999999999999999 899999999
Q ss_pred ceEEEecCCCC
Q 016936 107 VAVRVRRPTDY 117 (380)
Q Consensus 107 ~~i~v~~~~~~ 117 (380)
++|+|.++...
T Consensus 84 ~~l~V~~a~~~ 94 (97)
T 2e5j_A 84 DTLRVALARQQ 94 (97)
T ss_dssp SCCEEEECCCC
T ss_pred cEEEEEEcCCC
Confidence 99999997654
No 205
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=3.1e-15 Score=113.82 Aligned_cols=79 Identities=19% Similarity=0.341 Sum_probs=69.2
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec-----CCCcEEEEEeCCHHHHHHHH-HcC
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN-----HEKKFAFVEMRTVEEASNAM-ALD 100 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~-----~~~g~afV~f~~~~~a~~ai-~l~ 100 (380)
....+.++|||+|||+++++++|+++|++||. |..+.+. +++|||||+|.+.++|.+|+ .++
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~------------i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 79 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGT------------VKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMD 79 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSC------------EEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCC------------eEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhC
Confidence 44567899999999999999999999999997 5556553 34599999999999999999 899
Q ss_pred CceecCceEEEecCCCC
Q 016936 101 GIIFEGVAVRVRRPTDY 117 (380)
Q Consensus 101 ~~~i~g~~i~v~~~~~~ 117 (380)
+..+.|++|+|.++...
T Consensus 80 g~~~~g~~l~v~~a~~~ 96 (100)
T 2do4_A 80 GMTIKENIIKVAISNSG 96 (100)
T ss_dssp TEESSSCEEEEEECCCC
T ss_pred CCEECCEEEEEEECCCC
Confidence 99999999999997654
No 206
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.60 E-value=7.9e-15 Score=110.82 Aligned_cols=74 Identities=16% Similarity=0.366 Sum_probs=68.9
Q ss_pred CCCEEEEcCCCC-CCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEc
Q 016936 151 GPDRVFVGGLPY-YFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 229 (380)
Q Consensus 151 ~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~ 229 (380)
..++|||+|||. .+++++|+++|++||.|..+++. +|||||+|.+.++|++|+..|+|..+.|+.|+|.++
T Consensus 21 ~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (97)
T 2xnq_A 21 MKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVS 92 (97)
T ss_dssp TTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 347999999998 99999999999999999999883 679999999999999999999999999999999998
Q ss_pred ccC
Q 016936 230 TAS 232 (380)
Q Consensus 230 ~~~ 232 (380)
..+
T Consensus 93 ~~~ 95 (97)
T 2xnq_A 93 SSN 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 207
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.60 E-value=3.8e-16 Score=149.73 Aligned_cols=83 Identities=20% Similarity=0.420 Sum_probs=78.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcc
Q 016936 151 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 230 (380)
Q Consensus 151 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~ 230 (380)
..++|||+|||+.+++++|.++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..|.|+.|.|.++.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 34699999999999999999999999999999999998889999999999999999999999999999999999999997
Q ss_pred cCC
Q 016936 231 ASS 233 (380)
Q Consensus 231 ~~~ 233 (380)
...
T Consensus 181 ~~~ 183 (437)
T 3pgw_S 181 GRT 183 (437)
T ss_pred CCC
Confidence 653
No 208
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=3e-15 Score=113.45 Aligned_cols=77 Identities=23% Similarity=0.362 Sum_probs=67.4
Q ss_pred cccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec---------CCCcEEEEEeCCHHHHHHHH-Hc
Q 016936 30 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN---------HEKKFAFVEMRTVEEASNAM-AL 99 (380)
Q Consensus 30 ~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~---------~~~g~afV~f~~~~~a~~ai-~l 99 (380)
.+.++|||+|||+++++++|+++|++||. |..+.+. .++|||||+|.+.++|++|+ .|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~------------i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l 70 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGA------------IKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQL 70 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSC------------EEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHh
Confidence 46799999999999999999999999998 4444432 45789999999999999999 69
Q ss_pred CCceecCceEEEecCCCCC
Q 016936 100 DGIIFEGVAVRVRRPTDYN 118 (380)
Q Consensus 100 ~~~~i~g~~i~v~~~~~~~ 118 (380)
++..|.|++|+|.++....
T Consensus 71 ~g~~~~g~~l~V~~a~~~~ 89 (98)
T 2cpf_A 71 QGHTVDGHKLEVRISERAT 89 (98)
T ss_dssp TTCEETTEECEEECSSCSS
T ss_pred CCCeeCCeEEEEEEccCCC
Confidence 9999999999999976643
No 209
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=4.5e-15 Score=110.61 Aligned_cols=76 Identities=26% Similarity=0.449 Sum_probs=68.9
Q ss_pred hcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceecCc
Q 016936 29 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 107 (380)
Q Consensus 29 ~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~g~ 107 (380)
..+.++|||+|||.++++++|+++|++||. |..+.+. +|||||+|.+.++|++|+ .+++..+.|+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 70 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGK------------VLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLHGV 70 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSC------------EEEEEEE--TTEEEEEESSHHHHHHHHHHHTTCBCSSC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCC------------EEEEEEE--CCEEEEEECCHHHHHHHHHHhcCCccCCc
Confidence 456799999999999999999999999997 6667666 799999999999999999 7999999999
Q ss_pred eEEEecCCCCC
Q 016936 108 AVRVRRPTDYN 118 (380)
Q Consensus 108 ~i~v~~~~~~~ 118 (380)
+|+|.++....
T Consensus 71 ~l~v~~a~~~~ 81 (90)
T 2dnq_A 71 NINVEASKNKS 81 (90)
T ss_dssp BCEEECSSCCC
T ss_pred EEEEEECCCCC
Confidence 99999976653
No 210
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.59 E-value=6.1e-15 Score=115.20 Aligned_cols=82 Identities=23% Similarity=0.376 Sum_probs=71.0
Q ss_pred hhhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecC------CCcEEEEEeCCHHHHHHHH-H
Q 016936 26 QQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH------EKKFAFVEMRTVEEASNAM-A 98 (380)
Q Consensus 26 ~~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~------~~g~afV~f~~~~~a~~ai-~ 98 (380)
+....+.++|||+|||..+++++|+++|++||. |..+.+.. ++|||||+|.+.++|++|+ .
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 76 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGR------------ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 76 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSC------------EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 345567899999999999999999999999998 55555543 3689999999999999999 7
Q ss_pred cCCceecCceEEEecCCCCCc
Q 016936 99 LDGIIFEGVAVRVRRPTDYNP 119 (380)
Q Consensus 99 l~~~~i~g~~i~v~~~~~~~~ 119 (380)
+++..|.|+.|+|.++.....
T Consensus 77 l~g~~~~g~~l~V~~a~~~~~ 97 (115)
T 2dgo_A 77 MGGQWLGGRQIRTNWATRKPP 97 (115)
T ss_dssp TTTCEETTEECEEEESSCCCC
T ss_pred hCCCEECCEEEEEEEccCCCC
Confidence 999999999999999876543
No 211
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=3.4e-15 Score=115.77 Aligned_cols=76 Identities=18% Similarity=0.145 Sum_probs=70.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 016936 153 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 232 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~ 232 (380)
++|||+|||+.+++++|+++|++||.|..|.++. ++|||||+|.+.++|++|+..|||..+.|+.|.|.|+...
T Consensus 11 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 11 TVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 6899999999999999999999999999998864 4679999999999999999999999999999999998765
Q ss_pred CC
Q 016936 233 SG 234 (380)
Q Consensus 233 ~~ 234 (380)
..
T Consensus 85 ~~ 86 (111)
T 1whx_A 85 VF 86 (111)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 212
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.59 E-value=2.2e-15 Score=113.52 Aligned_cols=79 Identities=29% Similarity=0.441 Sum_probs=68.1
Q ss_pred hhhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecC-----CCcEEEEEeCCHHHHHHHH-Hc
Q 016936 26 QQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH-----EKKFAFVEMRTVEEASNAM-AL 99 (380)
Q Consensus 26 ~~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~-----~~g~afV~f~~~~~a~~ai-~l 99 (380)
.....+.++|||+|||+.+++++|+++|++||. |.++.+.. ++|||||+|.+.++|.+|+ .+
T Consensus 10 ~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~------------i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l 77 (95)
T 2ywk_A 10 PAQEEADRTVFVGNLEARVREEILYELFLQAGP------------LTKVTICKDREGKPKSFGFVCFKHPESVSYAIALL 77 (95)
T ss_dssp --CTTGGGEEEEECCCTTCCHHHHHHHHGGGSC------------EEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHH
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCC------------EEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHh
Confidence 345567899999999999999999999999997 56666543 4789999999999999999 69
Q ss_pred CCceecCceEEEecCCC
Q 016936 100 DGIIFEGVAVRVRRPTD 116 (380)
Q Consensus 100 ~~~~i~g~~i~v~~~~~ 116 (380)
++..+.|++|+|.++..
T Consensus 78 ~g~~~~g~~l~V~~a~~ 94 (95)
T 2ywk_A 78 NGIRLYGRPINVSGPSS 94 (95)
T ss_dssp TTCEETTEECEEECCCC
T ss_pred CCCEECCCEEEEEEcCC
Confidence 99999999999998653
No 213
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=1.9e-15 Score=118.97 Aligned_cols=78 Identities=18% Similarity=0.274 Sum_probs=72.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCe----eEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEE
Q 016936 151 GPDRVFVGGLPYYFTETQIKELLESFGTL----HGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 226 (380)
Q Consensus 151 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i----~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v 226 (380)
...+|||+|||+++++++|+++|++||.| ..|+|+.++ +|+++|||||+|.+.++|++|++. ++..+.|+.|+|
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 34799999999999999999999999985 689999985 799999999999999999999996 999999999999
Q ss_pred EEcc
Q 016936 227 RRAT 230 (380)
Q Consensus 227 ~~~~ 230 (380)
..+.
T Consensus 100 ~~a~ 103 (123)
T 2dha_A 100 FRST 103 (123)
T ss_dssp EEEC
T ss_pred EECC
Confidence 9874
No 214
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.59 E-value=2.9e-15 Score=109.79 Aligned_cols=74 Identities=18% Similarity=0.388 Sum_probs=65.5
Q ss_pred cceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec------CCCcEEEEEeCCHHHHHHHH-HcCCcee
Q 016936 32 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN------HEKKFAFVEMRTVEEASNAM-ALDGIIF 104 (380)
Q Consensus 32 ~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~------~~~g~afV~f~~~~~a~~ai-~l~~~~i 104 (380)
+++|||+|||.++++++|+++|++||. |.++.+. .++|||||+|.+.++|++|+ .+++..+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~------------i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~ 68 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPS------------YLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL 68 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTT------------EEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCC------------eeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCee
Confidence 468999999999999999999999998 5555543 33799999999999999999 6999999
Q ss_pred cCceEEEecCCCC
Q 016936 105 EGVAVRVRRPTDY 117 (380)
Q Consensus 105 ~g~~i~v~~~~~~ 117 (380)
.|++|+|.++..+
T Consensus 69 ~g~~l~v~~a~~~ 81 (83)
T 3md1_A 69 NGRPLRINWAAKL 81 (83)
T ss_dssp TTEECEEEECCCC
T ss_pred CCcEEEEEecCcC
Confidence 9999999997654
No 215
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=1.5e-14 Score=111.62 Aligned_cols=76 Identities=25% Similarity=0.339 Sum_probs=69.4
Q ss_pred cccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceecC--
Q 016936 30 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG-- 106 (380)
Q Consensus 30 ~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~g-- 106 (380)
...++|||+|||+++++++|+++|++||. |..+.+..+ |||||+|.+.++|++|| .||+..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~------------i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 79 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGD------------VCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 79 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSC------------EEEEEEETT-TEEEEEESSHHHHHHHHHHSSSEEEECTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------EeEEEEecC-CEEEEEECCHHHHHHHHHHHCcCCccCCc
Confidence 45799999999999999999999999997 777887766 99999999999999999 699999999
Q ss_pred ---ceEEEecCCCCC
Q 016936 107 ---VAVRVRRPTDYN 118 (380)
Q Consensus 107 ---~~i~v~~~~~~~ 118 (380)
++|+|.++..+.
T Consensus 80 ~~~~~i~V~~a~~~~ 94 (108)
T 1x4c_A 80 GETAYIRVKVDGPRS 94 (108)
T ss_dssp SCEEEEEEEESSCCS
T ss_pred CcceEEEEEeCCCCC
Confidence 999999987643
No 216
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=8.1e-15 Score=111.26 Aligned_cols=80 Identities=25% Similarity=0.394 Sum_probs=69.8
Q ss_pred chhhhcccceEEEcCCCCcCcHHHHHHHHHHH--HHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCC
Q 016936 25 TQQATRHARRVYVGGLPPLANEQAIATFFSQV--MTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDG 101 (380)
Q Consensus 25 ~~~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~--G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~ 101 (380)
.+....+.++|||+|||+.+++++|+++|++| |. |..+.+ .+|||||+|.+.++|.+|+ .+++
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~------------v~~~~~--~~g~afV~f~~~~~A~~A~~~l~g 73 (99)
T 2cpd_A 8 DEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGA------------VERVKK--IRDYAFVHFSNREDAVEAMKALNG 73 (99)
T ss_dssp CCSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTC------------EEEEEE--CSSEEEEEESSHHHHHHHHHHHSS
T ss_pred cccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcc------------eEEEEE--eCCeEEEEeCCHHHHHHHHHHhCC
Confidence 33556678999999999999999999999999 55 666655 4789999999999999999 6999
Q ss_pred ceecCceEEEecCCCCC
Q 016936 102 IIFEGVAVRVRRPTDYN 118 (380)
Q Consensus 102 ~~i~g~~i~v~~~~~~~ 118 (380)
..|.|++|+|.++....
T Consensus 74 ~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpd_A 74 KVLDGSPIEVTLAKPVD 90 (99)
T ss_dssp EEETTEEEEEECCCCCC
T ss_pred CEeCCcEEEEEECCCCC
Confidence 99999999999976643
No 217
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=5.2e-15 Score=113.21 Aligned_cols=80 Identities=24% Similarity=0.390 Sum_probs=70.8
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecC----CCcEEEEEeCCHHHHHHHH-HcCC
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH----EKKFAFVEMRTVEEASNAM-ALDG 101 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~----~~g~afV~f~~~~~a~~ai-~l~~ 101 (380)
....+.++|||+|||+++++++|+++|++||. |..+.+.. ++|||||+|.+.++|.+|+ .+++
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~------------v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 77 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGK------------ILDVEIIFNERGSKGFGFVTFENSADADRAREKLHG 77 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSC------------EEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 44567899999999999999999999999997 66777654 3899999999999999999 7999
Q ss_pred ceecCceEEEecCCCCC
Q 016936 102 IIFEGVAVRVRRPTDYN 118 (380)
Q Consensus 102 ~~i~g~~i~v~~~~~~~ 118 (380)
..|.|++|+|.++....
T Consensus 78 ~~~~g~~l~v~~a~~~~ 94 (103)
T 2cq3_A 78 TVVEGRKIEVNNATARV 94 (103)
T ss_dssp CEETTEECEEEECCSSC
T ss_pred CEECCEEEEEEEcccCC
Confidence 99999999999976643
No 218
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.37 E-value=1e-16 Score=125.67 Aligned_cols=81 Identities=25% Similarity=0.422 Sum_probs=76.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeE--------EEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeE
Q 016936 152 PDRVFVGGLPYYFTETQIKELLESFGTLHG--------FDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKT 223 (380)
Q Consensus 152 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 223 (380)
.++|||+|||..+++++|+++|++||.|.. |.++.++.+++++|||||+|.+.++|++|+..|++..+.|+.
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 86 (116)
T 2lcw_A 7 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNP 86 (116)
Confidence 469999999999999999999999999998 899998878999999999999999999999999999999999
Q ss_pred EEEEEcccC
Q 016936 224 LTVRRATAS 232 (380)
Q Consensus 224 i~v~~~~~~ 232 (380)
|+|.++.++
T Consensus 87 l~V~~a~~~ 95 (116)
T 2lcw_A 87 IKVSFATRR 95 (116)
Confidence 999998765
No 219
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=6.3e-15 Score=111.19 Aligned_cols=76 Identities=17% Similarity=0.167 Sum_probs=68.5
Q ss_pred cccceEEEcCCCCcCcHHHHH----HHHHHHHHhccCCCCCCCCeeEEEEecCC---CcEEEEEeCCHHHHHHHH-HcCC
Q 016936 30 RHARRVYVGGLPPLANEQAIA----TFFSQVMTAIGGNSAGPGDAVVNVYINHE---KKFAFVEMRTVEEASNAM-ALDG 101 (380)
Q Consensus 30 ~~~~~v~V~nLp~~~t~~~l~----~~f~~~G~i~~~~~~~~~~~i~~~~~~~~---~g~afV~f~~~~~a~~ai-~l~~ 101 (380)
.+.++|||+|||+++++++|+ ++|++||. |.++.+..+ +|||||+|.+.++|++|+ .+|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~------------v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g 74 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGK------------VKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHR 74 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSC------------EEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCc------------EEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCC
Confidence 456899999999999999999 99999997 777777644 899999999999999999 7999
Q ss_pred ceecCceEEEecCCCC
Q 016936 102 IIFEGVAVRVRRPTDY 117 (380)
Q Consensus 102 ~~i~g~~i~v~~~~~~ 117 (380)
..+.|++|+|.++...
T Consensus 75 ~~~~gr~l~V~~a~~~ 90 (96)
T 2dgx_A 75 YKIGSKKILVSLATGA 90 (96)
T ss_dssp EEETTEEEEEEECCCS
T ss_pred CEECCeEEEEEEcCCC
Confidence 9999999999997543
No 220
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=3e-15 Score=112.49 Aligned_cols=76 Identities=24% Similarity=0.293 Sum_probs=67.6
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec------CCCcEEEEEeCCHHHHHHHH-Hc
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN------HEKKFAFVEMRTVEEASNAM-AL 99 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~------~~~g~afV~f~~~~~a~~ai-~l 99 (380)
....+.++|||+|||+++++++|+++|++||. |..+.+. .++|||||+|.+.++|.+|+ .+
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~------------v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 78 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGK------------VVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI 78 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSC------------EEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHT
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCC------------eEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHc
Confidence 34457799999999999999999999999997 6666664 35789999999999999999 79
Q ss_pred CCceecCceEEEecC
Q 016936 100 DGIIFEGVAVRVRRP 114 (380)
Q Consensus 100 ~~~~i~g~~i~v~~~ 114 (380)
++..|.|++|+|.++
T Consensus 79 ~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 79 NNKQLFGRVIKASIA 93 (94)
T ss_dssp TTEEETTEEEEEEEC
T ss_pred CCCeeCCcEEEEEec
Confidence 999999999999985
No 221
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.7e-15 Score=112.22 Aligned_cols=78 Identities=26% Similarity=0.392 Sum_probs=68.0
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec------CCCcEEEEEeCCHHHHHHHH-Hc
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN------HEKKFAFVEMRTVEEASNAM-AL 99 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~------~~~g~afV~f~~~~~a~~ai-~l 99 (380)
....+.++|||+|||+++++++|+++|++||. |..+.+. +++|||||+|.+.++|.+|+ .+
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~------------v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 77 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGP------------IADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 77 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSC------------EEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCC------------eeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHh
Confidence 34556899999999999999999999999997 5555553 45789999999999999999 69
Q ss_pred CCceecCceEEEecCCC
Q 016936 100 DGIIFEGVAVRVRRPTD 116 (380)
Q Consensus 100 ~~~~i~g~~i~v~~~~~ 116 (380)
++..+.|++|+|.++..
T Consensus 78 ~g~~~~g~~l~v~~a~~ 94 (95)
T 2cqc_A 78 NGMELDGRRIRVSGPSS 94 (95)
T ss_dssp TTEEETTEEEEEECCSC
T ss_pred CCCEECCEEEEEEecCC
Confidence 99999999999998653
No 222
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.58 E-value=2.3e-15 Score=118.72 Aligned_cols=80 Identities=19% Similarity=0.383 Sum_probs=72.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCee--EEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEE
Q 016936 149 AEGPDRVFVGGLPYYFTETQIKELLESFGTLH--GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 226 (380)
Q Consensus 149 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v 226 (380)
.....+|||+|||+.+++++|+++|++| .|. .|+|+.++. |+++|||||+|.+.++|++|++. ++..+.|+.|+|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V 115 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEV 115 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEE
Confidence 3455799999999999999999999999 666 899999986 99999999999999999999995 779999999999
Q ss_pred EEccc
Q 016936 227 RRATA 231 (380)
Q Consensus 227 ~~~~~ 231 (380)
.++..
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 98753
No 223
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.58 E-value=2.4e-15 Score=111.23 Aligned_cols=76 Identities=25% Similarity=0.363 Sum_probs=64.8
Q ss_pred hcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec------CCCcEEEEEeCCHHHHHHHH-HcCC
Q 016936 29 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN------HEKKFAFVEMRTVEEASNAM-ALDG 101 (380)
Q Consensus 29 ~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~------~~~g~afV~f~~~~~a~~ai-~l~~ 101 (380)
..+.++|||+|||.++++++|+++|++||. |.++.+. .++|||||+|.+.++|++|+ .+++
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~------------i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 70 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFGR------------ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG 70 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGSC------------EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcCC------------EeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC
Confidence 346789999999999999999999999998 5555553 24689999999999999999 6999
Q ss_pred ceecCceEEEecCCC
Q 016936 102 IIFEGVAVRVRRPTD 116 (380)
Q Consensus 102 ~~i~g~~i~v~~~~~ 116 (380)
..+.|++|+|.++..
T Consensus 71 ~~~~g~~l~v~~a~~ 85 (87)
T 3bs9_A 71 QWLGGRQIRTNWATR 85 (87)
T ss_dssp CEETTEECEEEEEC-
T ss_pred CEECCeEEEEEecCC
Confidence 999999999998654
No 224
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.58 E-value=5.2e-15 Score=124.49 Aligned_cols=84 Identities=23% Similarity=0.382 Sum_probs=78.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEE
Q 016936 148 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 227 (380)
Q Consensus 148 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~ 227 (380)
.....++|||+|||+.+++++|+++|++||.|..|.++.++ ++.++|||||+|.+.++|++|++.|++..+.|+.|.|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34556799999999999999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred EcccC
Q 016936 228 RATAS 232 (380)
Q Consensus 228 ~~~~~ 232 (380)
++...
T Consensus 163 ~a~~~ 167 (177)
T 2f3j_A 163 LVASQ 167 (177)
T ss_dssp EESSG
T ss_pred EecCC
Confidence 98654
No 225
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=4.2e-15 Score=112.86 Aligned_cols=79 Identities=19% Similarity=0.402 Sum_probs=70.0
Q ss_pred hhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec------CCCcEEEEEeCCHHHHHHHHHcCC
Q 016936 28 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN------HEKKFAFVEMRTVEEASNAMALDG 101 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~------~~~g~afV~f~~~~~a~~ai~l~~ 101 (380)
...+.++|||+|||..+++++|+++|++||. |..+.+. .++|||||+|.+.++|.+|+.+++
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~ 73 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGV------------VTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHF 73 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSC------------EEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCC
Confidence 3456799999999999999999999999987 6667664 357999999999999999999999
Q ss_pred ceecCceEEEecCCCCC
Q 016936 102 IIFEGVAVRVRRPTDYN 118 (380)
Q Consensus 102 ~~i~g~~i~v~~~~~~~ 118 (380)
..|.|++|+|.++..+.
T Consensus 74 ~~~~g~~l~V~~a~~~~ 90 (99)
T 2dgs_A 74 HDIMGKKVEVKRAEPRD 90 (99)
T ss_dssp CBSSSCBCEEEECCCCC
T ss_pred CEECCeEEEEEECCCCc
Confidence 99999999999977653
No 226
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=5.8e-15 Score=113.72 Aligned_cols=80 Identities=21% Similarity=0.330 Sum_probs=70.9
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCC-------CcEEEEEeCCHHHHHHHH-H
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE-------KKFAFVEMRTVEEASNAM-A 98 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~-------~g~afV~f~~~~~a~~ai-~ 98 (380)
....+.++|||+|||..+++++|+++|++||. |..+.+..+ +|||||+|.+.++|.+|+ .
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 77 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGE------------LKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNA 77 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSC------------EEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCC------------eEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHH
Confidence 44567899999999999999999999999997 677776544 799999999999999999 7
Q ss_pred c-CCceecCceEEEecCCCCC
Q 016936 99 L-DGIIFEGVAVRVRRPTDYN 118 (380)
Q Consensus 99 l-~~~~i~g~~i~v~~~~~~~ 118 (380)
+ ++..|.|++|+|.++....
T Consensus 78 l~~~~~~~g~~l~v~~a~~~~ 98 (107)
T 2cph_A 78 LCHSTHLYGRRLVLEWADSEV 98 (107)
T ss_dssp HHTCCBSSSCBCEEEECCCCC
T ss_pred hccCCeECCCEEEEEeCCCCC
Confidence 8 9999999999999976643
No 227
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.58 E-value=4.9e-15 Score=111.79 Aligned_cols=77 Identities=26% Similarity=0.444 Sum_probs=68.8
Q ss_pred ccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec------CCCcEEEEEeCCHHHHHHHH-HcCCce
Q 016936 31 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN------HEKKFAFVEMRTVEEASNAM-ALDGII 103 (380)
Q Consensus 31 ~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~------~~~g~afV~f~~~~~a~~ai-~l~~~~ 103 (380)
++++|||+|||.++++++|+++|++||. |.++.+. .++|||||+|.+.++|.+|+ .+++..
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~------------i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 68 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGP------------VINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQ 68 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSC------------EEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCC------------EEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCe
Confidence 4689999999999999999999999997 6677664 34799999999999999999 799999
Q ss_pred ecCceEEEecCCCCCc
Q 016936 104 FEGVAVRVRRPTDYNP 119 (380)
Q Consensus 104 i~g~~i~v~~~~~~~~ 119 (380)
+.|++|+|.++.....
T Consensus 69 ~~g~~l~V~~a~~~~~ 84 (96)
T 2x1f_A 69 LGSRFLKCGYSSNSDI 84 (96)
T ss_dssp ETTEECEEEECSCSSG
T ss_pred ECCeEEEEEEcCCCCC
Confidence 9999999999876543
No 228
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.5e-15 Score=114.67 Aligned_cols=79 Identities=22% Similarity=0.331 Sum_probs=69.5
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec-----CCCcEEEEEeCCHHHHHHHHHcCC
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN-----HEKKFAFVEMRTVEEASNAMALDG 101 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~-----~~~g~afV~f~~~~~a~~ai~l~~ 101 (380)
..+...++|||+|||+++|+++|+++|++||. |.++.+. .++|||||+|.+.++|.+|+.+++
T Consensus 6 ~~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~------------v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~ 73 (103)
T 1s79_A 6 KNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQ------------VLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG 73 (103)
T ss_dssp SSCSGGGCEEEECCCTTCCHHHHHHHHHTSSC------------EEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSC
T ss_pred cccCCCCEEEEECCCCCCCHHHHHHHHhhcCC------------EEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCC
Confidence 34566799999999999999999999999998 6666654 468999999999999999999999
Q ss_pred ceecCceEEEecCCCC
Q 016936 102 IIFEGVAVRVRRPTDY 117 (380)
Q Consensus 102 ~~i~g~~i~v~~~~~~ 117 (380)
..+.|++|.|.++.++
T Consensus 74 ~~~~gr~l~V~~~~~~ 89 (103)
T 1s79_A 74 QKYKETDLLILFKDDY 89 (103)
T ss_dssp CCCTTTTCEEEEHHHH
T ss_pred CEECCEEEEEEEchHH
Confidence 9999999999986553
No 229
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.58 E-value=3.2e-15 Score=110.07 Aligned_cols=74 Identities=26% Similarity=0.458 Sum_probs=66.5
Q ss_pred hcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec------CCCcEEEEEeCCHHHHHHHH-HcCC
Q 016936 29 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN------HEKKFAFVEMRTVEEASNAM-ALDG 101 (380)
Q Consensus 29 ~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~------~~~g~afV~f~~~~~a~~ai-~l~~ 101 (380)
..+.++|||+|||+++++++|+++|++||. |.++.+. .++|||||+|.+.++|.+|+ .+++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~------------i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 71 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGD------------ITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNE 71 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSC------------EEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCC------------EEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCC
Confidence 457899999999999999999999999997 6666653 35799999999999999999 8999
Q ss_pred ceecCceEEEecC
Q 016936 102 IIFEGVAVRVRRP 114 (380)
Q Consensus 102 ~~i~g~~i~v~~~ 114 (380)
..+.|++|+|.++
T Consensus 72 ~~~~g~~l~v~~a 84 (85)
T 3mdf_A 72 SELFGRTIRVNLA 84 (85)
T ss_dssp CEETTEECEEEEC
T ss_pred CEECCcEEEEEEc
Confidence 9999999999985
No 230
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=8.3e-15 Score=111.17 Aligned_cols=78 Identities=26% Similarity=0.349 Sum_probs=69.7
Q ss_pred hcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecC------CCcEEEEEeCCHHHHHHHH-HcCC
Q 016936 29 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH------EKKFAFVEMRTVEEASNAM-ALDG 101 (380)
Q Consensus 29 ~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~------~~g~afV~f~~~~~a~~ai-~l~~ 101 (380)
..+.++|||+|||+++++++|+++|++||. |..+.+.. ++|||||+|.+.++|.+|+ .+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 72 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGP------------LSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDG 72 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSC------------EEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------EeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCC
Confidence 457899999999999999999999999997 66777643 4699999999999999999 8999
Q ss_pred ceecCceEEEecCCCCC
Q 016936 102 IIFEGVAVRVRRPTDYN 118 (380)
Q Consensus 102 ~~i~g~~i~v~~~~~~~ 118 (380)
..|.|++|+|.++....
T Consensus 73 ~~~~g~~l~V~~a~~~~ 89 (99)
T 1whw_A 73 QVFQGRMLHVLPSTIKK 89 (99)
T ss_dssp EESSSCEEEEEECCCCS
T ss_pred CEECCcEEEEEEcCCCc
Confidence 99999999999977654
No 231
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.58 E-value=4.3e-15 Score=114.86 Aligned_cols=83 Identities=12% Similarity=0.233 Sum_probs=64.9
Q ss_pred ccchhhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec------CCCcEEEEEeCCHHHHHHH
Q 016936 23 VMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN------HEKKFAFVEMRTVEEASNA 96 (380)
Q Consensus 23 ~~~~~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~------~~~g~afV~f~~~~~a~~a 96 (380)
........+.++|||+|||.++++++|+++|++||. |..+.+. .++|||||+|.+.++|.+|
T Consensus 16 ~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~------------i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~A 83 (109)
T 2rs2_A 16 PRGSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGE------------VKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 83 (109)
T ss_dssp ----------CCEEEESCCTTCCHHHHHHHHTTTSC------------EEEEEECCCTTTCCCTTCEEEEESSHHHHHHH
T ss_pred ccccccCCCCCEEEEeCCCCCCCHHHHHHHHHccCC------------eEEEEEEECCCCCCcCcEEEEEECCHHHHHHH
Confidence 344466778999999999999999999999999998 6666653 4579999999999999999
Q ss_pred HHcCCceecCceEEEecCCCC
Q 016936 97 MALDGIIFEGVAVRVRRPTDY 117 (380)
Q Consensus 97 i~l~~~~i~g~~i~v~~~~~~ 117 (380)
+...+..+.|+.|+|.++..+
T Consensus 84 i~~~~~~l~g~~l~V~~a~~~ 104 (109)
T 2rs2_A 84 LAQSRHELDSKTIDPKVAFPR 104 (109)
T ss_dssp HHSSCEEETTEEEEEEECCCC
T ss_pred HHHCCCcCCCEEEEEEEccCC
Confidence 966679999999999987654
No 232
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.58 E-value=5.9e-15 Score=112.78 Aligned_cols=88 Identities=23% Similarity=0.371 Sum_probs=69.1
Q ss_pred ceEEEEeccCC-cccCC---Ch-----------HHHHHHHHHHHHhh-cccCCeEEEEecCCCCCCCCCCCccEEEEEee
Q 016936 278 AKVLCLTEAIT-ADALA---DD-----------EEYEEILEDMREEC-GKYGTLVNVVIPRPDQNGGETPGVGKVFLEYY 341 (380)
Q Consensus 278 ~~~~~l~~~~~-~~~~~---~~-----------~~~~~~~~~L~~~f-~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~ 341 (380)
++++.+.|++. ++... ++ ..+.++.++|+++| ++||.|.+|.++++.. + +..|+|||+|.
T Consensus 1 s~~~~l~nm~~~p~~~~~~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~---~~~G~~fV~f~ 76 (104)
T 1jmt_A 1 SQTIALLNIYRNPQNSSQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-D---HLVGNVYVKFR 76 (104)
T ss_dssp CCEEEEEEEEECCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-S---SSEEEEEEEES
T ss_pred CcEEEEeeccCCccccccccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-C---CccEEEEEEEC
Confidence 36788888883 44322 22 22456668888888 9999999999988653 2 34577899999
Q ss_pred chhhHHHHHHHHcCcccCCeEEEEEecc
Q 016936 342 DAVGCATAKNALSGRKFGGNTVNAFYYP 369 (380)
Q Consensus 342 ~~~~A~~A~~~l~g~~i~gr~l~v~~~~ 369 (380)
+.++|.+|+..|||+.|+||.|+|+|+|
T Consensus 77 ~~~~A~~A~~~lng~~~~Gr~i~v~~sp 104 (104)
T 1jmt_A 77 REEDAEKAVIDLNNRWFNGQPIHAELSP 104 (104)
T ss_dssp CHHHHHHHHHHHTTCEETTEECCEEECC
T ss_pred CHHHHHHHHHHHCCCEECCEEEEEEEcC
Confidence 9999999999999999999999999986
No 233
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.5e-15 Score=117.20 Aligned_cols=80 Identities=28% Similarity=0.372 Sum_probs=70.9
Q ss_pred chhhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec------CCCcEEEEEeCCHHHHHHHHH
Q 016936 25 TQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN------HEKKFAFVEMRTVEEASNAMA 98 (380)
Q Consensus 25 ~~~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~------~~~g~afV~f~~~~~a~~ai~ 98 (380)
....+...++|||+|||.++++++|+++|++||. |..+.+. .++|||||+|.+.++|.+|+.
T Consensus 18 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 85 (114)
T 2cq4_A 18 LSPEERDARTVFCMQLAARIRPRDLEDFFSAVGK------------VRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG 85 (114)
T ss_dssp CCTTHHHHTEEEEESCCTTCCHHHHHHHHTTTSC------------EEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHH
T ss_pred cCcccCCCCEEEEeCCCCCCCHHHHHHHHHhCCC------------EeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHH
Confidence 3356778899999999999999999999999997 6666663 467999999999999999999
Q ss_pred cCCceecCceEEEecCCC
Q 016936 99 LDGIIFEGVAVRVRRPTD 116 (380)
Q Consensus 99 l~~~~i~g~~i~v~~~~~ 116 (380)
+++..|.|++|+|.++..
T Consensus 86 l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 86 LTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTTEEETTEEEEEEEHHH
T ss_pred cCCCEeCCeEEEEEecCC
Confidence 999999999999998644
No 234
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.58 E-value=1.1e-14 Score=112.82 Aligned_cols=73 Identities=25% Similarity=0.493 Sum_probs=68.5
Q ss_pred CCEEEEcCCCCC-CCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcc
Q 016936 152 PDRVFVGGLPYY-FTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 230 (380)
Q Consensus 152 ~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~ 230 (380)
.++|||+|||+. +++++|+++|++||.|..|.+ ++|||||+|.+.++|++|+..|++..+.|+.|+|.++.
T Consensus 27 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 27 NSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp SSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 479999999999 999999999999999999988 36799999999999999999999999999999999987
Q ss_pred cC
Q 016936 231 AS 232 (380)
Q Consensus 231 ~~ 232 (380)
..
T Consensus 99 ~~ 100 (110)
T 1wf1_A 99 EP 100 (110)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 235
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=6.1e-15 Score=116.75 Aligned_cols=79 Identities=15% Similarity=0.267 Sum_probs=68.6
Q ss_pred hhcccceEEEcCCCCcCcHHHHH----HHHHHHHHhccCCCCCCCCeeEEEEe---cCCCcEEEEEeCCHHHHHHHH-Hc
Q 016936 28 ATRHARRVYVGGLPPLANEQAIA----TFFSQVMTAIGGNSAGPGDAVVNVYI---NHEKKFAFVEMRTVEEASNAM-AL 99 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~~~t~~~l~----~~f~~~G~i~~~~~~~~~~~i~~~~~---~~~~g~afV~f~~~~~a~~ai-~l 99 (380)
...+.++|||+|||+.+++++|+ ++|++||. |.++.+ .+++|||||+|.+.++|..|+ .+
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~------------I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~l 92 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGD------------ILDIVVDLSDDNSGKAYIVFATQESAQAFVEAF 92 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSC------------EEEEEECCCCSSCCCEEEEESSHHHHHHHHHHS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCC------------eEEEEeccCCCcCCEEEEEECCHHHHHHHHHHH
Confidence 34568999999999999999876 69999998 555554 467899999999999999999 89
Q ss_pred CCceecCceEEEecCCCCC
Q 016936 100 DGIIFEGVAVRVRRPTDYN 118 (380)
Q Consensus 100 ~~~~i~g~~i~v~~~~~~~ 118 (380)
||..|.|++|+|.|+....
T Consensus 93 ng~~l~gr~l~V~~a~~~~ 111 (127)
T 2a3j_A 93 QGYPFQGNPLVITFSETPQ 111 (127)
T ss_dssp TTCCCTTSCCEEEECCCCC
T ss_pred CCCEeCCCEEEEEEccCcc
Confidence 9999999999999987654
No 236
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.58 E-value=3.1e-15 Score=110.70 Aligned_cols=76 Identities=16% Similarity=0.392 Sum_probs=66.2
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEe------cCCCcEEEEEeCCHHHHHHHHHcC
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASNAMALD 100 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~------~~~~g~afV~f~~~~~a~~ai~l~ 100 (380)
..+.+.++|||+|||+++++++|+++|++||. |..+.+ ++++|||||+|.+.++|.+|++++
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~ 73 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGE------------VVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 73 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSC------------EEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCC------------EEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhC
Confidence 45678899999999999999999999999998 555554 334789999999999999999889
Q ss_pred CceecCceEEEecC
Q 016936 101 GIIFEGVAVRVRRP 114 (380)
Q Consensus 101 ~~~i~g~~i~v~~~ 114 (380)
+..+.|++|+|.++
T Consensus 74 ~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 74 EHRLDGRVIDPKKA 87 (87)
T ss_dssp CEEETTEEEEEEEC
T ss_pred CCEECCEEEEEEeC
Confidence 99999999999864
No 237
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.58 E-value=3.4e-15 Score=112.65 Aligned_cols=78 Identities=15% Similarity=0.307 Sum_probs=71.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcc
Q 016936 151 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 230 (380)
Q Consensus 151 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~ 230 (380)
..++|||+|||..+++++|+++|++||.|..+ . .++.++|||||+|.+.++|++|+..|+|..+.|+.|+|.++.
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~---~--~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV---S--QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE---E--ETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe---C--CCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 34799999999999999999999999988766 2 368899999999999999999999999999999999999997
Q ss_pred cCC
Q 016936 231 ASS 233 (380)
Q Consensus 231 ~~~ 233 (380)
++.
T Consensus 90 ~~~ 92 (96)
T 1fjc_A 90 EKG 92 (96)
T ss_dssp SSC
T ss_pred CCC
Confidence 654
No 238
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=9e-15 Score=110.33 Aligned_cols=78 Identities=18% Similarity=0.252 Sum_probs=70.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEE-EEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEc
Q 016936 151 GPDRVFVGGLPYYFTETQIKELLESFGTLHGF-DLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 229 (380)
Q Consensus 151 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v-~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~ 229 (380)
..++|||+|||+.+++++|+++|++||.|..| .++.++.+ |.|||+|.+.++|++|+..|||..+.|+.|+|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45799999999999999999999999999999 47776543 34999999999999999999999999999999999
Q ss_pred ccC
Q 016936 230 TAS 232 (380)
Q Consensus 230 ~~~ 232 (380)
.++
T Consensus 90 ~~~ 92 (96)
T 2e44_A 90 PDE 92 (96)
T ss_dssp CCC
T ss_pred Ccc
Confidence 776
No 239
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.58 E-value=5.1e-15 Score=109.79 Aligned_cols=75 Identities=17% Similarity=0.241 Sum_probs=69.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcc
Q 016936 151 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 230 (380)
Q Consensus 151 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~ 230 (380)
..++|||+|||+.+++++|+++|++| .|..+++. +++|||||+|.+.++|++|++.|||..+.|++|+|.++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 34799999999999999999999999 99999884 568999999999999999999999999999999999986
Q ss_pred cC
Q 016936 231 AS 232 (380)
Q Consensus 231 ~~ 232 (380)
..
T Consensus 77 ~~ 78 (88)
T 1wg1_A 77 TD 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 240
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=8.2e-15 Score=110.11 Aligned_cols=79 Identities=24% Similarity=0.393 Sum_probs=69.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEc
Q 016936 150 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 229 (380)
Q Consensus 150 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~ 229 (380)
...++|||+|||+.+++++|+++|++||.|..| +.++.+++ ||||+|.+.++|++|+. |++..+.|+.|.|.++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 344799999999999999999999999999987 44544554 99999999999999999 9999999999999988
Q ss_pred ccCCC
Q 016936 230 TASSG 234 (380)
Q Consensus 230 ~~~~~ 234 (380)
..+..
T Consensus 80 ~~~~~ 84 (94)
T 2e5g_A 80 EQKEF 84 (94)
T ss_dssp CCSCC
T ss_pred CcCCC
Confidence 76543
No 241
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.57 E-value=4.5e-15 Score=115.00 Aligned_cols=76 Identities=21% Similarity=0.380 Sum_probs=67.9
Q ss_pred hhcccceEEEcCCCCc-CcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceec
Q 016936 28 ATRHARRVYVGGLPPL-ANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFE 105 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~~-~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~ 105 (380)
+....++|||+|||++ +++++|+++|++||. |..+.+ ++|||||+|.+.++|++|+ .+++..|.
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~------------v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~ 88 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGR------------VAGCSV--HKGYAFVQYSNERHARAAVLGENGRVLA 88 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSC------------CSEEEE--ETTEEEEECSSSHHHHHHHHHHTTCEET
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCC------------eEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 4455699999999999 999999999999998 555655 7899999999999999999 89999999
Q ss_pred CceEEEecCCCC
Q 016936 106 GVAVRVRRPTDY 117 (380)
Q Consensus 106 g~~i~v~~~~~~ 117 (380)
|++|+|.++...
T Consensus 89 g~~l~V~~a~~~ 100 (110)
T 1wf1_A 89 GQTLDINMAGEP 100 (110)
T ss_dssp TEECCEEESCCC
T ss_pred CeEEEEEECCCC
Confidence 999999997643
No 242
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.57 E-value=7.9e-16 Score=123.73 Aligned_cols=81 Identities=16% Similarity=0.197 Sum_probs=73.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEc
Q 016936 150 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 229 (380)
Q Consensus 150 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~ 229 (380)
...++|||+|||+++++++|+++|++|| |..|+|+.+++ ++++|||||+|.+.++|++|+ .+++..+.|+.|+|..+
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 3457999999999999999999999999 66999999975 999999999999999999999 68999999999999998
Q ss_pred ccCC
Q 016936 230 TASS 233 (380)
Q Consensus 230 ~~~~ 233 (380)
....
T Consensus 121 ~~~~ 124 (139)
T 2hgn_A 121 STTG 124 (139)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7653
No 243
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=4.2e-15 Score=114.41 Aligned_cols=78 Identities=14% Similarity=0.224 Sum_probs=69.4
Q ss_pred CCCCEEEEcCCCCC-CCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhC--CCeeCCeEEEE
Q 016936 150 EGPDRVFVGGLPYY-FTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALN--GLKMGDKTLTV 226 (380)
Q Consensus 150 ~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~--g~~~~g~~i~v 226 (380)
...++|||+|||++ +++++|+++|++||.|..|.+.+ ++|||||+|.+.++|++|++.|+ +..+.|++|+|
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 34579999999998 99999999999999999999964 36899999999999999999885 46799999999
Q ss_pred EEcccCC
Q 016936 227 RRATASS 233 (380)
Q Consensus 227 ~~~~~~~ 233 (380)
.++..+.
T Consensus 97 ~~a~~~~ 103 (112)
T 1x4f_A 97 DLSEKYK 103 (112)
T ss_dssp EEECSCS
T ss_pred EECcccc
Confidence 9987653
No 244
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=8.2e-15 Score=110.31 Aligned_cols=77 Identities=23% Similarity=0.361 Sum_probs=68.2
Q ss_pred cccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec------CCCcEEEEEeCCHHHHHHHH-HcCCc
Q 016936 30 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN------HEKKFAFVEMRTVEEASNAM-ALDGI 102 (380)
Q Consensus 30 ~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~------~~~g~afV~f~~~~~a~~ai-~l~~~ 102 (380)
.++++|||+|||.++++++|+++|++||. |..+.+. +++|||||+|.+.++|.+|+ .+++.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~------------v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 70 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGK------------IDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGF 70 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSC------------EEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCC------------EeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCC
Confidence 46799999999999999999999999997 5666653 35789999999999999999 69999
Q ss_pred eecCceEEEecCCCCC
Q 016936 103 IFEGVAVRVRRPTDYN 118 (380)
Q Consensus 103 ~i~g~~i~v~~~~~~~ 118 (380)
.|.|++|+|.++..+.
T Consensus 71 ~~~g~~l~V~~a~~~~ 86 (95)
T 2dnz_A 71 ELAGRPMRVGHVTERL 86 (95)
T ss_dssp CSSSSCCEEEESSCCC
T ss_pred eeCCcEEEEEEccccc
Confidence 9999999999976653
No 245
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.8e-14 Score=111.92 Aligned_cols=99 Identities=22% Similarity=0.356 Sum_probs=81.3
Q ss_pred CCccceEEEEeccCCcccCC-ChHHHHHHHHHHHHhhcccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHH
Q 016936 274 GETLAKVLCLTEAITADALA-DDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNA 352 (380)
Q Consensus 274 ~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~L~~~f~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~ 352 (380)
.+.+++++.+.|++...++. +..++.+++++|+++|++||.|.+|.+... . + .|+|||+|.+.++|.+|++.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~-~----~--~G~afV~f~~~~~A~~Ai~~ 83 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDR-H----P--DGVASVSFRDPEEADYCIQT 83 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETT-C----T--TCEEEEECSCHHHHHHHHHH
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecC-C----C--CEEEEEEECCHHHHHHHHHH
Confidence 46789999999998877643 345678899999999999999999977432 2 2 36779999999999999999
Q ss_pred HcCcccCCeEEEEEeccc-cccccccCC
Q 016936 353 LSGRKFGGNTVNAFYYPE-DKYFNKDYS 379 (380)
Q Consensus 353 l~g~~i~gr~l~v~~~~~-~~~~~~~~~ 379 (380)
|||+.|+||+|+|.|+.+ ..|..+.-+
T Consensus 84 lng~~~~gr~l~v~~a~~~~~~~~~~~s 111 (112)
T 2dit_A 84 LDGRWFGGRQITAQAWDGTTDYQSGPSS 111 (112)
T ss_dssp STTCEETTEECEEEECCSCCCSSCCCCC
T ss_pred cCCCEECCcEEEEEEeCCCCCcccCCCC
Confidence 999999999999999877 455554433
No 246
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.57 E-value=5.7e-15 Score=109.46 Aligned_cols=75 Identities=21% Similarity=0.329 Sum_probs=66.6
Q ss_pred cccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec-------CCCcEEEEEeCCHHHHHHHH-HcCC
Q 016936 30 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN-------HEKKFAFVEMRTVEEASNAM-ALDG 101 (380)
Q Consensus 30 ~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~-------~~~g~afV~f~~~~~a~~ai-~l~~ 101 (380)
..+++|||+|||.++++++|+++|++||. |.++.+. +++|||||+|.+.++|.+|+ .+++
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 69 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGK------------IKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDG 69 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSC------------EEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCC------------EEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCC
Confidence 45789999999999999999999999997 6666652 26899999999999999999 6999
Q ss_pred ceecCceEEEecCCC
Q 016936 102 IIFEGVAVRVRRPTD 116 (380)
Q Consensus 102 ~~i~g~~i~v~~~~~ 116 (380)
..+.|++|+|.++..
T Consensus 70 ~~~~g~~l~v~~a~~ 84 (88)
T 4a8x_A 70 GQIDGQEITATAVLA 84 (88)
T ss_dssp CEETTEECEEEEECC
T ss_pred CeECCeEEEEEECCC
Confidence 999999999998644
No 247
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=6.6e-15 Score=112.39 Aligned_cols=78 Identities=27% Similarity=0.516 Sum_probs=68.3
Q ss_pred hcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecC------CCcEEEEEeCCHHHHHHHH-HcCC
Q 016936 29 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH------EKKFAFVEMRTVEEASNAM-ALDG 101 (380)
Q Consensus 29 ~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~------~~g~afV~f~~~~~a~~ai-~l~~ 101 (380)
..+.++|||+|||+++++++|+++|++||. |..+.+.. ++|||||+|.+.++|.+|+ .+++
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~------------i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 76 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQ------------ISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNG 76 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSC------------CCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCC------------eEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCC
Confidence 346799999999999999999999999998 55555543 5789999999999999999 8999
Q ss_pred ceecCceEEEecCCCCC
Q 016936 102 IIFEGVAVRVRRPTDYN 118 (380)
Q Consensus 102 ~~i~g~~i~v~~~~~~~ 118 (380)
..|.|++|+|.++....
T Consensus 77 ~~~~g~~l~v~~a~~~~ 93 (102)
T 1x5s_A 77 KSVDGRQIRVDQAGKSS 93 (102)
T ss_dssp CCTTSCCCEEEEEECCC
T ss_pred CEECCeEEEEEECCCCC
Confidence 99999999999976543
No 248
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.3e-14 Score=108.09 Aligned_cols=76 Identities=22% Similarity=0.418 Sum_probs=68.7
Q ss_pred hhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceecC
Q 016936 28 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 106 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~g 106 (380)
...+.++|||+|||.++++++|+++|++||. |..+.+. ++||||+|.+.++|++|+ .+++..+.|
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------v~~~~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g 70 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGR------------VIECDVV--KDYAFVHMEKEADAKAAIAQLNGKEVKG 70 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSC------------EEEEEEC--SSCEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCC------------EEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 4567899999999999999999999999997 7777776 559999999999999999 699999999
Q ss_pred ceEEEecCCCC
Q 016936 107 VAVRVRRPTDY 117 (380)
Q Consensus 107 ~~i~v~~~~~~ 117 (380)
++|+|.++...
T Consensus 71 ~~l~v~~a~~~ 81 (90)
T 2dnp_A 71 KRINVELSTKG 81 (90)
T ss_dssp EECEEEESCCC
T ss_pred cEEEEEECCCC
Confidence 99999997654
No 249
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.57 E-value=4.8e-15 Score=113.79 Aligned_cols=80 Identities=21% Similarity=0.270 Sum_probs=69.5
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecC-----CCcEEEEEeCCHHHHHHHH-HcC
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH-----EKKFAFVEMRTVEEASNAM-ALD 100 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~-----~~g~afV~f~~~~~a~~ai-~l~ 100 (380)
....+.++|||+|||+.+++++|+++|++||. |..+.+.. ++|||||+|.+.++|.+|+ .|+
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~------------i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 77 (105)
T 2dnh_A 10 SRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGV------------IDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALH 77 (105)
T ss_dssp CSCCCCCEEEEESCCTTCCHHHHHHHHTTTSC------------EEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHS
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHc
Confidence 44567899999999999999999999999998 55565543 3799999999999999999 799
Q ss_pred CceecC---ceEEEecCCCCC
Q 016936 101 GIIFEG---VAVRVRRPTDYN 118 (380)
Q Consensus 101 ~~~i~g---~~i~v~~~~~~~ 118 (380)
+..+.| ++|+|.++....
T Consensus 78 g~~~~gg~~~~l~V~~a~~~~ 98 (105)
T 2dnh_A 78 GSQTMPGASSSLVVKFADTDK 98 (105)
T ss_dssp SCCCCTTCSSCCEEEESCSSC
T ss_pred CCccCCCCCccEEEEECccCc
Confidence 999998 999999976543
No 250
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.57 E-value=1.4e-14 Score=118.45 Aligned_cols=78 Identities=23% Similarity=0.288 Sum_probs=70.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCC--eEEEEEEc
Q 016936 152 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD--KTLTVRRA 229 (380)
Q Consensus 152 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g--~~i~v~~~ 229 (380)
..+|||+||++.+++++|+++|++||.|.+|.+..+ +++|||||+|.+.++|++|++.|||..|.| +.|+|.++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 357999999999999999999999999999998654 257899999999999999999999999965 99999999
Q ss_pred ccCC
Q 016936 230 TASS 233 (380)
Q Consensus 230 ~~~~ 233 (380)
.++.
T Consensus 122 k~~~ 125 (164)
T 1sjr_A 122 KLTS 125 (164)
T ss_dssp SSSS
T ss_pred cCCc
Confidence 8763
No 251
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.57 E-value=9.6e-15 Score=114.17 Aligned_cols=78 Identities=23% Similarity=0.483 Sum_probs=68.2
Q ss_pred hcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec-----CCCcEEEEEeCCHHHHHHHH-HcCCc
Q 016936 29 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN-----HEKKFAFVEMRTVEEASNAM-ALDGI 102 (380)
Q Consensus 29 ~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~-----~~~g~afV~f~~~~~a~~ai-~l~~~ 102 (380)
..+.++|||+|||.++++++|+++|++||. |.++.+. .++|||||+|.+.++|++|+ .+++.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~------------i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~ 71 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGP------------ISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGK 71 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSC------------CSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------EEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCC
Confidence 456799999999999999999999999998 4445543 35699999999999999999 79999
Q ss_pred eecCceEEEecCCCCC
Q 016936 103 IFEGVAVRVRRPTDYN 118 (380)
Q Consensus 103 ~i~g~~i~v~~~~~~~ 118 (380)
.|.|++|+|.++....
T Consensus 72 ~~~g~~l~V~~a~~~~ 87 (116)
T 2fy1_A 72 SLHGKAIKVEQAKKPS 87 (116)
T ss_dssp BCSSSBCEEEECCCSS
T ss_pred EECCEEEEEEECCCCC
Confidence 9999999999976544
No 252
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.57 E-value=6.1e-15 Score=111.27 Aligned_cols=75 Identities=16% Similarity=0.379 Sum_probs=69.5
Q ss_pred CCCEEEEcCCCC-CCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEc
Q 016936 151 GPDRVFVGGLPY-YFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 229 (380)
Q Consensus 151 ~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~ 229 (380)
..++|||+|||. .+++++|+++|++||.|..|.+. +|||||+|.+.++|++|+..|++..+.|+.|+|.++
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence 347999999998 99999999999999999999984 579999999999999999999999999999999998
Q ss_pred ccCC
Q 016936 230 TASS 233 (380)
Q Consensus 230 ~~~~ 233 (380)
....
T Consensus 81 ~~~~ 84 (96)
T 2kvi_A 81 SSNA 84 (96)
T ss_dssp ECCC
T ss_pred CcCC
Confidence 7654
No 253
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.57 E-value=1.6e-14 Score=113.88 Aligned_cols=79 Identities=22% Similarity=0.306 Sum_probs=70.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceE-EEEEEcChhHHHHHHHHhCCCeeCC--eEEEE
Q 016936 150 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGY-GFCVYQDPAVTDIACAALNGLKMGD--KTLTV 226 (380)
Q Consensus 150 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~-afV~f~~~~~A~~Ai~~l~g~~~~g--~~i~v 226 (380)
+.-.+|||+||++.+++++|+++|++||.|.+|++..+ ++|+ |||+|.+.++|++|++.|||..+.| +.|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 34457999999999999999999999999999988764 2577 9999999999999999999999988 99999
Q ss_pred EEcccCC
Q 016936 227 RRATASS 233 (380)
Q Consensus 227 ~~~~~~~ 233 (380)
+++++..
T Consensus 101 ~~ak~~~ 107 (130)
T 3zzy_A 101 DFSKLTS 107 (130)
T ss_dssp EECSCSS
T ss_pred EecCCCc
Confidence 9997653
No 254
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=8.3e-15 Score=112.47 Aligned_cols=80 Identities=30% Similarity=0.450 Sum_probs=70.0
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec------CCCcEEEEEeCCHHHHHHHH-Hc
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN------HEKKFAFVEMRTVEEASNAM-AL 99 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~------~~~g~afV~f~~~~~a~~ai-~l 99 (380)
......++|||+|||.++++++|+++|++||. |..+.+. .++|||||+|.+.++|.+|+ .|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 77 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGP------------VVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 77 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSC------------EEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHS
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHh
Confidence 34567899999999999999999999999997 6666654 35689999999999999999 69
Q ss_pred CCceecCceEEEecCCCCC
Q 016936 100 DGIIFEGVAVRVRRPTDYN 118 (380)
Q Consensus 100 ~~~~i~g~~i~v~~~~~~~ 118 (380)
++..|.|++|+|.++....
T Consensus 78 ~g~~~~g~~l~v~~a~~~~ 96 (105)
T 1x5u_A 78 DMIKLYGKPIRVNKASAHN 96 (105)
T ss_dssp SSCBCSSCBCEEEETTTTS
T ss_pred CCCeECCeEEEEEECCCCC
Confidence 9999999999999976643
No 255
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5.2e-15 Score=111.61 Aligned_cols=80 Identities=16% Similarity=0.313 Sum_probs=67.2
Q ss_pred cccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCee-EEE---EecCCCcEEEEEeCCHHHHHHHH-HcCCcee
Q 016936 30 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAV-VNV---YINHEKKFAFVEMRTVEEASNAM-ALDGIIF 104 (380)
Q Consensus 30 ~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i-~~~---~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i 104 (380)
.+.++|||+|||+++++++|+++|++||.|.. + ... ....++|||||+|.+.++|++|+ .+++..+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~---------~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 73 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQ---------TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL 73 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSS---------CCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE---------EEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE
Confidence 46799999999999999999999999998532 2 111 12345899999999999999999 5999999
Q ss_pred cCceEEEecCCCCC
Q 016936 105 EGVAVRVRRPTDYN 118 (380)
Q Consensus 105 ~g~~i~v~~~~~~~ 118 (380)
.|++|+|.++....
T Consensus 74 ~g~~l~v~~a~~~~ 87 (96)
T 1x5t_A 74 CNRPITVSYAFKKD 87 (96)
T ss_dssp TTEECEEEESCCCC
T ss_pred CCEEEEEEEecccC
Confidence 99999999976653
No 256
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=3.8e-15 Score=114.00 Aligned_cols=80 Identities=21% Similarity=0.285 Sum_probs=70.5
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec----CCCcEEEEEeCCHHHHHHHH-HcCC
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN----HEKKFAFVEMRTVEEASNAM-ALDG 101 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~----~~~g~afV~f~~~~~a~~ai-~l~~ 101 (380)
....+.++|||+|||+.+++++|+++|++||. |..+.+. .++|||||+|.+.++|.+|+ .+++
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 77 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGT------------ITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 77 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSC------------EEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------EEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCC
Confidence 44568899999999999999999999999998 5555554 45899999999999999999 6999
Q ss_pred ceecCceEEEecCCCCC
Q 016936 102 IIFEGVAVRVRRPTDYN 118 (380)
Q Consensus 102 ~~i~g~~i~v~~~~~~~ 118 (380)
..|.|++|+|.++..+.
T Consensus 78 ~~~~g~~l~V~~a~~~~ 94 (103)
T 2d9p_A 78 RIVATKPLYVALAQRKE 94 (103)
T ss_dssp CBSSSSBCEEEECSSCC
T ss_pred CEeCCcEEEEEEecccc
Confidence 99999999999977654
No 257
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.2e-14 Score=106.23 Aligned_cols=72 Identities=13% Similarity=0.159 Sum_probs=64.6
Q ss_pred EEEEcCCCCCCCHHH----HHHHHHhcC-CeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEE
Q 016936 154 RVFVGGLPYYFTETQ----IKELLESFG-TLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 228 (380)
Q Consensus 154 ~l~V~nlp~~~t~~~----l~~~F~~~G-~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~ 228 (380)
.|||+|||+.+++++ |+++|++|| .|..| ++ |+|||+|.+.++|++|++.|+|..+.|++|+|.+
T Consensus 11 ~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 11 LLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 399999999999987 558999995 99877 33 8999999999999999999999999999999999
Q ss_pred cccCCCC
Q 016936 229 ATASSGQ 235 (380)
Q Consensus 229 ~~~~~~~ 235 (380)
+..+...
T Consensus 81 A~~~sd~ 87 (96)
T 2diu_A 81 TPKNREL 87 (96)
T ss_dssp SCCSCCC
T ss_pred cCCCcce
Confidence 9877543
No 258
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.56 E-value=2.4e-14 Score=109.50 Aligned_cols=75 Identities=21% Similarity=0.317 Sum_probs=67.7
Q ss_pred cccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceecCce
Q 016936 30 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 108 (380)
Q Consensus 30 ~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~g~~ 108 (380)
.+.++|||+|||+++++++|+++|++||. |..+.+. ++||||+|.+.++|.+|+ .|++..|.|++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~------------i~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 74 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGK------------LERVKKL--KDYAFIHFDERDGAVKAMEEMNGKDLEGEN 74 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSC------------EEEEEEC--SSCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------EEEEEEE--CCEEEEEeCCHHHHHHHHHHHCCCccCCCE
Confidence 45799999999999999999999999997 6777665 679999999999999999 69999999999
Q ss_pred EEEecCCCCC
Q 016936 109 VRVRRPTDYN 118 (380)
Q Consensus 109 i~v~~~~~~~ 118 (380)
|+|.++....
T Consensus 75 l~v~~a~~~~ 84 (103)
T 2dgu_A 75 IEIVFAKPPD 84 (103)
T ss_dssp EEEEECCCCC
T ss_pred EEEEEcCCCc
Confidence 9999986654
No 259
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=3.4e-14 Score=107.77 Aligned_cols=77 Identities=18% Similarity=0.276 Sum_probs=70.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhc--CCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEE
Q 016936 150 EGPDRVFVGGLPYYFTETQIKELLESF--GTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 227 (380)
Q Consensus 150 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~ 227 (380)
...++|||+|||+.+++++|+++|++| |.|..+.+. +|||||+|.+.++|++|+..||+..+.|+.|+|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 344799999999999999999999999 889988774 4599999999999999999999999999999999
Q ss_pred EcccCCC
Q 016936 228 RATASSG 234 (380)
Q Consensus 228 ~~~~~~~ 234 (380)
++.++..
T Consensus 85 ~a~~~~~ 91 (99)
T 2cpd_A 85 LAKPVDK 91 (99)
T ss_dssp CCCCCCC
T ss_pred ECCCCCC
Confidence 9987643
No 260
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=3.9e-15 Score=113.90 Aligned_cols=79 Identities=24% Similarity=0.326 Sum_probs=69.6
Q ss_pred hhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec------CCCcEEEEEeCCHHHHHHHH-HcC
Q 016936 28 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN------HEKKFAFVEMRTVEEASNAM-ALD 100 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~------~~~g~afV~f~~~~~a~~ai-~l~ 100 (380)
...+.++|||+|||.++++++|+++|++||. |..+.+. .++|||||+|.+.++|++|+ .++
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~------------i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 76 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGR------------VGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMD 76 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSC------------EEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHS
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCC------------EEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcC
Confidence 3456899999999999999999999999987 6667653 35799999999999999999 699
Q ss_pred CceecCceEEEecCCCCC
Q 016936 101 GIIFEGVAVRVRRPTDYN 118 (380)
Q Consensus 101 ~~~i~g~~i~v~~~~~~~ 118 (380)
+..|.|++|+|.++....
T Consensus 77 g~~~~g~~l~V~~a~~~~ 94 (103)
T 2dnm_A 77 GAELDGRELRVQVARYGR 94 (103)
T ss_dssp SCCBTTBCCEEEECSSCC
T ss_pred CCEECCcEEEEEECCcCC
Confidence 999999999999976543
No 261
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=5e-15 Score=113.05 Aligned_cols=78 Identities=24% Similarity=0.440 Sum_probs=68.6
Q ss_pred hcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEe------cCCCcEEEEEeCCHHHHHHHH-HcCC
Q 016936 29 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASNAM-ALDG 101 (380)
Q Consensus 29 ~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~------~~~~g~afV~f~~~~~a~~ai-~l~~ 101 (380)
..+.++|||+|||+++++++|+++|++||. |..+.+ .+++|||||+|.+.++|++|+ .+++
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~------------i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 76 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGD------------ITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNE 76 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSC------------CCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCC------------EEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 356899999999999999999999999998 444554 346899999999999999999 7999
Q ss_pred ceecCceEEEecCCCCC
Q 016936 102 IIFEGVAVRVRRPTDYN 118 (380)
Q Consensus 102 ~~i~g~~i~v~~~~~~~ 118 (380)
..|.|++|+|.++....
T Consensus 77 ~~~~g~~l~V~~a~~~~ 93 (102)
T 2cqb_A 77 SELFGRTIRVNLAKPMR 93 (102)
T ss_dssp EEETTEEEEEEECCCCC
T ss_pred CEECCcEEEEEeCCCCC
Confidence 99999999999977654
No 262
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.56 E-value=4.6e-15 Score=110.24 Aligned_cols=76 Identities=29% Similarity=0.448 Sum_probs=67.2
Q ss_pred hcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec------CCCcEEEEEeCCHHHHHHHHHcCCc
Q 016936 29 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN------HEKKFAFVEMRTVEEASNAMALDGI 102 (380)
Q Consensus 29 ~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~------~~~g~afV~f~~~~~a~~ai~l~~~ 102 (380)
+.+.++|||+|||+++++++|+++|++||. |..+.+. +++|||||+|.+.++|.+|+.+++.
T Consensus 3 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~ 70 (89)
T 3ucg_A 3 EADARSIYVGNVDYGATAEELEAHFHGCGS------------VNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDES 70 (89)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHGGGCC------------EEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTC
T ss_pred CCcCCEEEEeCCCCCCCHHHHHHHHHhCCC------------EEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCC
Confidence 456799999999999999999999999998 5555543 4589999999999999999999999
Q ss_pred eecCceEEEecCCC
Q 016936 103 IFEGVAVRVRRPTD 116 (380)
Q Consensus 103 ~i~g~~i~v~~~~~ 116 (380)
.+.|++|+|.++..
T Consensus 71 ~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 71 LFRGRQIKVIPKRT 84 (89)
T ss_dssp EETTEECEEEETTT
T ss_pred EECCcEEEEEEccC
Confidence 99999999998654
No 263
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=2.4e-14 Score=111.04 Aligned_cols=79 Identities=22% Similarity=0.340 Sum_probs=69.8
Q ss_pred hhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec------CCCcEEEEEeCCHHHHHHHH-HcC
Q 016936 28 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN------HEKKFAFVEMRTVEEASNAM-ALD 100 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~------~~~g~afV~f~~~~~a~~ai-~l~ 100 (380)
...+.++|||+|||+++++++|+++|++||. |.++.+. .++|||||+|.+.++|.+|+ .++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~------------i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~ 78 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGD------------LKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAAS 78 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSC------------EEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHC
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCC------------eEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhc
Confidence 3456799999999999999999999999997 6677664 45899999999999999999 799
Q ss_pred ------CceecCceEEEecCCCCC
Q 016936 101 ------GIIFEGVAVRVRRPTDYN 118 (380)
Q Consensus 101 ------~~~i~g~~i~v~~~~~~~ 118 (380)
+..|.|++|+|.++..+.
T Consensus 79 ~~~~~~~~~~~g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 79 LEAEGGGLKLDGRQLKVDLAVTRD 102 (111)
T ss_dssp TTTTTCCEESSSCEEEEECCCCCC
T ss_pred cccccCCcEEcCEEEEEEECCCCc
Confidence 999999999999977653
No 264
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=3e-14 Score=111.40 Aligned_cols=78 Identities=19% Similarity=0.324 Sum_probs=68.5
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecC------CCcEEEEEeCCHHHHHHHH-Hc
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH------EKKFAFVEMRTVEEASNAM-AL 99 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~------~~g~afV~f~~~~~a~~ai-~l 99 (380)
..+.+.++|||+|||+++++++|+++|++||. |.++.+.. ++|||||+|.+.++|++|+ .+
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~ 79 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGD------------IEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDP 79 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSC------------EEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCS
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCC------------eeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhC
Confidence 45667899999999999999999999999997 66666643 5789999999999999999 67
Q ss_pred CCceecCceEEEecCCCC
Q 016936 100 DGIIFEGVAVRVRRPTDY 117 (380)
Q Consensus 100 ~~~~i~g~~i~v~~~~~~ 117 (380)
++ .|.|++|+|.++...
T Consensus 80 ~~-~~~g~~l~V~~a~~~ 96 (116)
T 2cqd_A 80 NP-IIDGRKANVNLAYLG 96 (116)
T ss_dssp SC-EETTEECEEEESTTT
T ss_pred CC-cCCCEEEEEEEcccC
Confidence 87 899999999998654
No 265
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1e-14 Score=114.12 Aligned_cols=80 Identities=20% Similarity=0.422 Sum_probs=69.0
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEe------cCCCcEEEEEeCCHHHHHHHHHcC
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASNAMALD 100 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~------~~~~g~afV~f~~~~~a~~ai~l~ 100 (380)
....+.++|||+|||.++++++|+++|++||. |..+.+ +.++|||||+|.+.++|.+|+..+
T Consensus 22 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~------------i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~ 89 (116)
T 1x4b_A 22 REKEQFRKLFIGGLSFETTEESLRNYYEQWGK------------LTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 89 (116)
T ss_dssp CHHHHHTEEEEECCTTCCCHHHHHHHHTSSCC------------CSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSC
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------EEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhC
Confidence 45667899999999999999999999999998 444444 345799999999999999999669
Q ss_pred CceecCceEEEecCCCCC
Q 016936 101 GIIFEGVAVRVRRPTDYN 118 (380)
Q Consensus 101 ~~~i~g~~i~v~~~~~~~ 118 (380)
+..|.|++|+|.++..+.
T Consensus 90 ~~~~~g~~l~V~~a~~~~ 107 (116)
T 1x4b_A 90 PHSIDGRVVEPKRAVARE 107 (116)
T ss_dssp SEEETTEEEEEECCSSCC
T ss_pred CcEECCEEEEEEECCCCc
Confidence 999999999999976654
No 266
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.56 E-value=1.4e-14 Score=111.40 Aligned_cols=80 Identities=18% Similarity=0.259 Sum_probs=69.1
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec------CCCcEEEEEeCCHHHHHHHH-Hc
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN------HEKKFAFVEMRTVEEASNAM-AL 99 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~------~~~g~afV~f~~~~~a~~ai-~l 99 (380)
..+.+.++|||+|||.++++++|+++|++||. |..+.+. +++|||||+|.+.++|.+|+ .+
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 75 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGK------------IYELTVLKDRFTGMHKGCAFLTYCERESALKAQSAL 75 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSC------------CCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------eeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 34567899999999999999999999999998 5555553 46799999999999999999 79
Q ss_pred CCcee---cCceEEEecCCCCC
Q 016936 100 DGIIF---EGVAVRVRRPTDYN 118 (380)
Q Consensus 100 ~~~~i---~g~~i~v~~~~~~~ 118 (380)
++..+ .|++|+|.++....
T Consensus 76 ~g~~~~~~~g~~l~v~~a~~~~ 97 (106)
T 2dgp_A 76 HEQKTLPGMNRPIQVKPADSES 97 (106)
T ss_dssp TTTCCCTTCSSCCEEEECCCCS
T ss_pred cCCcccCCCCceEEEEECCccc
Confidence 99887 88999999976643
No 267
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.56 E-value=5.5e-15 Score=114.00 Aligned_cols=79 Identities=22% Similarity=0.376 Sum_probs=69.1
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec------CCCcEEEEEeCCHHHHHHHH-Hc
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN------HEKKFAFVEMRTVEEASNAM-AL 99 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~------~~~g~afV~f~~~~~a~~ai-~l 99 (380)
....+.++|||+|||..+++++|+++|++||. |..+.+. .++|||||+|.+.++|.+|+ .+
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~------------i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l 88 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGR------------IESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 88 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSC------------EEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHH
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHc
Confidence 45677899999999999999999999999998 5555543 34689999999999999999 79
Q ss_pred CCceecCceEEEecCCCC
Q 016936 100 DGIIFEGVAVRVRRPTDY 117 (380)
Q Consensus 100 ~~~~i~g~~i~v~~~~~~ 117 (380)
++..+.|++|+|.++..+
T Consensus 89 ~g~~i~g~~l~V~~a~~k 106 (108)
T 2jrs_A 89 NGFELAGRPMKVGHVTER 106 (108)
T ss_dssp TTCCSSSSCCEEECSCSS
T ss_pred CCCEECCEEEEEEEcccC
Confidence 999999999999997654
No 268
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=3.9e-14 Score=107.02 Aligned_cols=77 Identities=22% Similarity=0.338 Sum_probs=69.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEc
Q 016936 150 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 229 (380)
Q Consensus 150 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~ 229 (380)
...++|||+|+ .+++++|+++|++||.|..|.+. +++|||||+|.+.++|++|+..|++..+.|+.|+|.++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 34579999996 89999999999999999999884 45789999999999999999999999999999999999
Q ss_pred ccCCC
Q 016936 230 TASSG 234 (380)
Q Consensus 230 ~~~~~ 234 (380)
.++..
T Consensus 85 ~~~~~ 89 (97)
T 1x5p_A 85 RKQPM 89 (97)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 77643
No 269
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.55 E-value=5.1e-15 Score=112.40 Aligned_cols=86 Identities=22% Similarity=0.351 Sum_probs=65.9
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEe----cCCCcEEEEEeCCHHHHHHHH-HcCC
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI----NHEKKFAFVEMRTVEEASNAM-ALDG 101 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~----~~~~g~afV~f~~~~~a~~ai-~l~~ 101 (380)
......++|||+|||.++++++|+++|++||.|..... ...++..+.. +.++|||||+|.+.++|.+|+ .+++
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~--~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g 85 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKK--TGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG 85 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETT--TTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccc--cccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 44566799999999999999999999999998421000 0000022222 234799999999999999999 7999
Q ss_pred ceecCceEEEecC
Q 016936 102 IIFEGVAVRVRRP 114 (380)
Q Consensus 102 ~~i~g~~i~v~~~ 114 (380)
..+.|++|+|.++
T Consensus 86 ~~~~g~~l~V~~A 98 (99)
T 2la6_A 86 KEFSGNPIKVSFA 98 (99)
T ss_dssp CBSSSSBCEEEEC
T ss_pred CEeCCcEEEEEec
Confidence 9999999999885
No 270
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.55 E-value=9e-15 Score=112.26 Aligned_cols=79 Identities=23% Similarity=0.361 Sum_probs=69.1
Q ss_pred hhcccceEEEcCCCCcC------cHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec----CCCcEEEEEeCCHHHHHHHH
Q 016936 28 ATRHARRVYVGGLPPLA------NEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN----HEKKFAFVEMRTVEEASNAM 97 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~~~------t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~----~~~g~afV~f~~~~~a~~ai 97 (380)
....+++|||+|||+.+ ++++|+++|++||. |.++.+. +++|||||+|.+.++|.+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~------------v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai 78 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGK------------ITNDFYPEEDGKTKGYIFLEYASPAHAVDAV 78 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSC------------EEEEECCCBTTBSCCEEEEEECSSSHHHHHH
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCC------------EEEEEeeCCCCCeeeEEEEEECCHHHHHHHH
Confidence 44567999999999999 88999999999998 5666654 56899999999999999999
Q ss_pred -HcCCceecCc-eEEEecCCCCC
Q 016936 98 -ALDGIIFEGV-AVRVRRPTDYN 118 (380)
Q Consensus 98 -~l~~~~i~g~-~i~v~~~~~~~ 118 (380)
.+||..|.|+ +|+|.++.+..
T Consensus 79 ~~l~g~~~~g~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 79 KNADGYKLDKQHTFRVNLFTDFD 101 (105)
T ss_dssp HHCSSEECSTTCEEEEECSCCCC
T ss_pred HHhCCcccCCCceEEEEEcchHh
Confidence 7999999998 99999987643
No 271
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.5e-14 Score=111.37 Aligned_cols=77 Identities=23% Similarity=0.345 Sum_probs=68.8
Q ss_pred CCCEEEE--cCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCee-----CCeE
Q 016936 151 GPDRVFV--GGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKM-----GDKT 223 (380)
Q Consensus 151 ~~~~l~V--~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~-----~g~~ 223 (380)
..++||| +||++.+++++|+++|++||.|..|.++.+ +|||||+|.+.++|++|++.|||+.+ .|++
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 3478999 779999999999999999999999988642 68999999999999999999999988 7899
Q ss_pred EEEEEcccCC
Q 016936 224 LTVRRATASS 233 (380)
Q Consensus 224 i~v~~~~~~~ 233 (380)
|.|.++....
T Consensus 98 l~v~~a~~~p 107 (114)
T 2cq2_A 98 LYLNFVEKVQ 107 (114)
T ss_dssp CEEEEESCCC
T ss_pred EEEEecccCc
Confidence 9999987544
No 272
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.55 E-value=1.7e-14 Score=117.24 Aligned_cols=81 Identities=21% Similarity=0.269 Sum_probs=72.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEE--------EEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCC
Q 016936 150 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGF--------DLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD 221 (380)
Q Consensus 150 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v--------~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 221 (380)
...++|||+|||+.+++++|+++|++||.|..+ ++. .+++++|||||+|.+.++|.+|+..|||..+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 119 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG 119 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 344799999999999999999999999998774 222 268899999999999999999999999999999
Q ss_pred eEEEEEEcccCC
Q 016936 222 KTLTVRRATASS 233 (380)
Q Consensus 222 ~~i~v~~~~~~~ 233 (380)
+.|.|.++....
T Consensus 120 ~~l~V~~a~~~~ 131 (143)
T 3egn_A 120 KPMVVQFARSAR 131 (143)
T ss_dssp EECEEEECCCSC
T ss_pred cEEEEEECCCCC
Confidence 999999997653
No 273
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.4e-14 Score=108.38 Aligned_cols=78 Identities=27% Similarity=0.441 Sum_probs=69.0
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceec
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFE 105 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~ 105 (380)
....+.++|||+|||.++++++|+++|++||. |..+.+. ++||||+|.+.++|.+|+ .+++..+.
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~------------v~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~ 70 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGP------------VIECDIV--KDYAFVHMERAEDAVEAIRGLDNTEFQ 70 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSC------------CCEEEEC--SSEEEEEESCHHHHHHHHHHHTTEEET
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 34567899999999999999999999999997 6666665 559999999999999999 79999999
Q ss_pred CceEEEecCCCCC
Q 016936 106 GVAVRVRRPTDYN 118 (380)
Q Consensus 106 g~~i~v~~~~~~~ 118 (380)
|++|+|.++....
T Consensus 71 g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 71 GKRMHVQLSTSRL 83 (92)
T ss_dssp TEEEEEEESSCCC
T ss_pred CcEEEEEEccCCC
Confidence 9999999976643
No 274
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=3.4e-15 Score=113.78 Aligned_cols=81 Identities=20% Similarity=0.278 Sum_probs=68.6
Q ss_pred hhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceecC
Q 016936 28 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 106 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~g 106 (380)
.+.+.++|||+|||.++++++|+++|++||.|. +......+++|||||+|.+.++|++|+ .+++..|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~----------~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 80 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFIK----------VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEG 80 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEE----------CCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEE----------EEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 456789999999999999999999999998741 111134567899999999999999999 699999999
Q ss_pred ceEEEecCCCCC
Q 016936 107 VAVRVRRPTDYN 118 (380)
Q Consensus 107 ~~i~v~~~~~~~ 118 (380)
++|+|.++....
T Consensus 81 ~~l~v~~a~~~~ 92 (101)
T 2fc9_A 81 RAIRLELQGPRG 92 (101)
T ss_dssp EEEEEEECSSCC
T ss_pred eEEEEEEcCCCC
Confidence 999999976643
No 275
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.55 E-value=5.4e-15 Score=110.61 Aligned_cols=77 Identities=21% Similarity=0.273 Sum_probs=67.5
Q ss_pred hcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec----CCCcEEEEEeCCHHHHHHHH-HcCCce
Q 016936 29 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN----HEKKFAFVEMRTVEEASNAM-ALDGII 103 (380)
Q Consensus 29 ~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~----~~~g~afV~f~~~~~a~~ai-~l~~~~ 103 (380)
..+.++|||+|||.++++++|+++|++||. |..+.+. .++|||||+|.+.++|++|+ .+++..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~------------v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~ 72 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGH------------VLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMK 72 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSC------------EEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCC------------EEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 456799999999999999999999999998 4555543 35799999999999999999 699999
Q ss_pred ecCceEEEecCCCC
Q 016936 104 FEGVAVRVRRPTDY 117 (380)
Q Consensus 104 i~g~~i~v~~~~~~ 117 (380)
+.|++|+|.++...
T Consensus 73 ~~g~~l~v~~a~~~ 86 (92)
T 2dgv_A 73 LSGREIDVRIDRNA 86 (92)
T ss_dssp BTTBCCCCEECSCC
T ss_pred ECCcEEEEEEcCCC
Confidence 99999999987654
No 276
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.55 E-value=2.3e-14 Score=115.84 Aligned_cols=80 Identities=18% Similarity=0.299 Sum_probs=69.9
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec------CCCcEEEEEeCCHHHHHHHH-Hc
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN------HEKKFAFVEMRTVEEASNAM-AL 99 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~------~~~g~afV~f~~~~~a~~ai-~l 99 (380)
......++|||+|||.++++++|+++|+.||. |.++.+. +++|||||+|.+.++|.+|+ .+
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~------------i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 104 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGP------------IESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGL 104 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSC------------EEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 45677899999999999999999999999998 5555543 34799999999999999999 69
Q ss_pred CCceecCceEEEecCCCCC
Q 016936 100 DGIIFEGVAVRVRRPTDYN 118 (380)
Q Consensus 100 ~~~~i~g~~i~v~~~~~~~ 118 (380)
++..|.|++|+|.++....
T Consensus 105 ~g~~~~g~~l~v~~a~~~~ 123 (139)
T 1u6f_A 105 NGFNILNKRLKVALAASGH 123 (139)
T ss_dssp TTEECSSCEEEEEESSCCC
T ss_pred CCCEECCeEEEEEECCCCC
Confidence 9999999999999977653
No 277
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.55 E-value=1e-14 Score=115.50 Aligned_cols=79 Identities=24% Similarity=0.419 Sum_probs=69.5
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEe------cCCCcEEEEEeCCHHHHHHHHHcC
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASNAMALD 100 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~------~~~~g~afV~f~~~~~a~~ai~l~ 100 (380)
....+.++|||+|||.++++++|+++|++||. |.++.+ +.++|||||+|.+.++|.+|+.++
T Consensus 31 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~ 98 (124)
T 2jwn_A 31 KKEIDKRSVYVGNVDYGSTAQDLEAHFSSCGS------------INRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMD 98 (124)
T ss_dssp HHHHHHTEEEEEEECTTCCHHHHHHHHHTTSC------------EEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTT
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------EEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcC
Confidence 55677899999999999999999999999998 455544 345899999999999999999999
Q ss_pred CceecCceEEEecCCCC
Q 016936 101 GIIFEGVAVRVRRPTDY 117 (380)
Q Consensus 101 ~~~i~g~~i~v~~~~~~ 117 (380)
+..|.|+.|+|.++...
T Consensus 99 g~~~~g~~l~V~~a~~~ 115 (124)
T 2jwn_A 99 ETVFRGRTIKVLPKRTN 115 (124)
T ss_dssp TCEETTEECEEEESSCC
T ss_pred CCeECCeEEEEEECCCC
Confidence 99999999999997643
No 278
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.55 E-value=2.2e-15 Score=114.59 Aligned_cols=86 Identities=17% Similarity=0.277 Sum_probs=64.0
Q ss_pred CCccccchhhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEe-------cCCCcEEEEEeCCHH
Q 016936 19 MPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI-------NHEKKFAFVEMRTVE 91 (380)
Q Consensus 19 ~~~~~~~~~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~-------~~~~g~afV~f~~~~ 91 (380)
+|.+..+.......++|||+|||.++++++|+++|++|| | ..+.+ ++++|||||+|.+.+
T Consensus 6 ~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i------------~~v~i~~~~~~~g~~~g~afV~f~~~~ 72 (100)
T 2j76_E 6 HHHHHRSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-I------------SAVRLPREPSNPERLKGFGYAEFEDLD 72 (100)
T ss_dssp --------------CEEEESCCSSCCSSSHHHHHSCSSC-E------------EEEECSCCTTTTCCCCSCEEEEECCHH
T ss_pred CCCCCCCcCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-C------------eEEEEEecCCcCCccCeEEEEEECCHH
Confidence 333445556778899999999999999999999999997 4 33443 345799999999999
Q ss_pred HHHHHHHcCCceecCceEEEecCCCC
Q 016936 92 EASNAMALDGIIFEGVAVRVRRPTDY 117 (380)
Q Consensus 92 ~a~~ai~l~~~~i~g~~i~v~~~~~~ 117 (380)
+|.+|+.+++..|.|+.|+|.++...
T Consensus 73 ~a~~Ai~l~g~~~~g~~l~V~~a~~~ 98 (100)
T 2j76_E 73 SLLSALSLNEESLGNRRIRVDVADQA 98 (100)
T ss_dssp HHHHHHHTTTCCBTTBCCCCEECCCS
T ss_pred HHHHHHhcCCCEECCeEEEEEeccCC
Confidence 99999999999999999999997654
No 279
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.55 E-value=6.4e-15 Score=117.38 Aligned_cols=79 Identities=24% Similarity=0.328 Sum_probs=69.7
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec------CCCcEEEEEeCCHHHHHHHH-Hc
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN------HEKKFAFVEMRTVEEASNAM-AL 99 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~------~~~g~afV~f~~~~~a~~ai-~l 99 (380)
....+.++|||+|||+++++++|+++|++||. |..+.+. +++|||||+|.+.++|++|+ .+
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~------------I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~l 108 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGP------------IADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 108 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSC------------EEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 34567899999999999999999999999998 5666653 56799999999999999999 69
Q ss_pred CCceecCceEEEecCCCC
Q 016936 100 DGIIFEGVAVRVRRPTDY 117 (380)
Q Consensus 100 ~~~~i~g~~i~v~~~~~~ 117 (380)
++..|.|++|+|.++..+
T Consensus 109 ng~~i~g~~l~V~~a~~~ 126 (129)
T 2kxn_B 109 NGMELDGRRIRVDFSITK 126 (129)
T ss_dssp TTCCSSSSCCEESCCSSS
T ss_pred CCCEECCEEEEEEEecCC
Confidence 999999999999997654
No 280
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=6.7e-15 Score=113.20 Aligned_cols=77 Identities=26% Similarity=0.309 Sum_probs=67.8
Q ss_pred hhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec------CCCcEEEEEeCCHHHHHHHH-HcC
Q 016936 28 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN------HEKKFAFVEMRTVEEASNAM-ALD 100 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~------~~~g~afV~f~~~~~a~~ai-~l~ 100 (380)
...+.++|||+|||..+++++|+++|++||. |.++.+. .++|||||+|.+.++|++|+ .++
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~------------i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 86 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGE------------IKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLN 86 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSC------------EEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCC------------eEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhc
Confidence 4456799999999999999999999999998 5666553 34799999999999999999 699
Q ss_pred CceecCceEEEecCCC
Q 016936 101 GIIFEGVAVRVRRPTD 116 (380)
Q Consensus 101 ~~~i~g~~i~v~~~~~ 116 (380)
+..|.|++|+|.++..
T Consensus 87 g~~~~g~~l~V~~a~~ 102 (106)
T 1p27_B 87 GQDLMGQPISVDWCFV 102 (106)
T ss_dssp TCBSSSSBCEEEESEE
T ss_pred CCEECCcEEEEEeecC
Confidence 9999999999998654
No 281
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.54 E-value=3.8e-14 Score=108.35 Aligned_cols=81 Identities=15% Similarity=0.093 Sum_probs=71.4
Q ss_pred CCCEEEEcCCCC-----CCCHHHHHHHHHhcCCeeEEEEeeCCCC-CCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEE
Q 016936 151 GPDRVFVGGLPY-----YFTETQIKELLESFGTLHGFDLVKDRDT-GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTL 224 (380)
Q Consensus 151 ~~~~l~V~nlp~-----~~t~~~l~~~F~~~G~i~~v~l~~~~~~-~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i 224 (380)
.+++|+|.|+.. +-++++|+++|++||.|.+|.+++++.+ ++++|+|||+|.+.++|.+|+..|||+.+.|+.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 347999999952 2368999999999999999999998653 6899999999999999999999999999999999
Q ss_pred EEEEccc
Q 016936 225 TVRRATA 231 (380)
Q Consensus 225 ~v~~~~~ 231 (380)
.|.++..
T Consensus 87 ~v~~a~~ 93 (105)
T 2pe8_A 87 KACFYNL 93 (105)
T ss_dssp EEEECCH
T ss_pred EEEEcCH
Confidence 9999853
No 282
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=4.6e-15 Score=111.26 Aligned_cols=77 Identities=18% Similarity=0.371 Sum_probs=66.0
Q ss_pred hcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCC-ceecC
Q 016936 29 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDG-IIFEG 106 (380)
Q Consensus 29 ~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~-~~i~g 106 (380)
....++|||+|||+++++++|+++|++||.++. .+.+ .++|||||+|.+.++|.+|+ .+|+ ..+.|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~-----------~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g 72 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLA-----------GQVL-LKSGYAFVDYPDQNWAIRAIETLSGKVELHG 72 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCS-----------SCEE-EETTEEEECCSCHHHHHHHHHHHTTTCEETT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceE-----------EEEE-cCCCEEEEEECCHHHHHHHHHHccCCeeECC
Confidence 346789999999999999999999999998321 1111 36899999999999999999 7999 99999
Q ss_pred ceEEEecCCCC
Q 016936 107 VAVRVRRPTDY 117 (380)
Q Consensus 107 ~~i~v~~~~~~ 117 (380)
++|+|.++...
T Consensus 73 ~~l~v~~a~~~ 83 (93)
T 2cqh_A 73 KIMEVDYSVSK 83 (93)
T ss_dssp EECEEEECCCC
T ss_pred EEEEEEEccCc
Confidence 99999997654
No 283
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=9.8e-15 Score=113.64 Aligned_cols=89 Identities=22% Similarity=0.248 Sum_probs=70.0
Q ss_pred hhhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEe------cCCCcEEEEEeCCHHHHHHHH-H
Q 016936 26 QQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASNAM-A 98 (380)
Q Consensus 26 ~~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~------~~~~g~afV~f~~~~~a~~ai-~ 98 (380)
.....+.++|||+|||+++++++|+++|++||.|....... ...+.+ .+++|||||+|.+.++|.+|+ .
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~----~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 84 (113)
T 2cpe_A 9 PDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTG----QPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEW 84 (113)
T ss_dssp CCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSC----CBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHH
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccC----ccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 35567889999999999999999999999999853100000 002333 345799999999999999999 6
Q ss_pred cCCceecCceEEEecCCCCC
Q 016936 99 LDGIIFEGVAVRVRRPTDYN 118 (380)
Q Consensus 99 l~~~~i~g~~i~v~~~~~~~ 118 (380)
|++..|.|++|+|.++..+.
T Consensus 85 l~g~~~~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 85 FDGKDFQGSKLKVSLARKKP 104 (113)
T ss_dssp HTTCEETTEECEEECSSCCC
T ss_pred cCCCccCCCEEEEEECCCCC
Confidence 99999999999999977653
No 284
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1e-14 Score=110.63 Aligned_cols=78 Identities=22% Similarity=0.378 Sum_probs=67.1
Q ss_pred hhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeE-EEEec------CCCcEEEEEeCCHHHHHHHH-Hc
Q 016936 28 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV-NVYIN------HEKKFAFVEMRTVEEASNAM-AL 99 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~-~~~~~------~~~g~afV~f~~~~~a~~ai-~l 99 (380)
...++++|||+|||+++++++|+++|++||.| . ++.+. .++|||||+|.+.++|++|+ .+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i------------~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l 72 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGET------------VMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKI 72 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCC------------CCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCc------------ceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHH
Confidence 34578999999999999999999999999984 3 44443 34699999999999999999 69
Q ss_pred CCceecCce----EEEecCCCC
Q 016936 100 DGIIFEGVA----VRVRRPTDY 117 (380)
Q Consensus 100 ~~~~i~g~~----i~v~~~~~~ 117 (380)
|+..+.|+. |+|.|+...
T Consensus 73 ~g~~~~g~~~~~~l~v~~a~~~ 94 (99)
T 2div_A 73 NGKPLPGATPAKRFKLNYATYS 94 (99)
T ss_dssp TTSEESSCSSCEECCEEETTCC
T ss_pred cCCccCCCCcceeEEEeecCCC
Confidence 999999999 999987653
No 285
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.54 E-value=9.7e-15 Score=110.36 Aligned_cols=77 Identities=21% Similarity=0.422 Sum_probs=68.6
Q ss_pred hcccceEEEcCCCCcCcHHHHH----HHHHHHHHhccCCCCCCCCeeEEEEec---CCCcEEEEEeCCHHHHHHHH-HcC
Q 016936 29 TRHARRVYVGGLPPLANEQAIA----TFFSQVMTAIGGNSAGPGDAVVNVYIN---HEKKFAFVEMRTVEEASNAM-ALD 100 (380)
Q Consensus 29 ~~~~~~v~V~nLp~~~t~~~l~----~~f~~~G~i~~~~~~~~~~~i~~~~~~---~~~g~afV~f~~~~~a~~ai-~l~ 100 (380)
..++++|||+|||.++++++|+ ++|++||. |..+.+. +++|||||+|.+.++|.+|+ .++
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~------------i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~ 72 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQ------------ILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQ 72 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSC------------EEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCC------------EEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhC
Confidence 4578999999999999999999 99999997 6666654 56899999999999999999 799
Q ss_pred CceecCceEEEecCCCC
Q 016936 101 GIIFEGVAVRVRRPTDY 117 (380)
Q Consensus 101 ~~~i~g~~i~v~~~~~~ 117 (380)
+..+.|++|+|.++...
T Consensus 73 g~~~~g~~l~v~~a~~~ 89 (97)
T 1nu4_A 73 GFPFYDKPMRIQYAKTD 89 (97)
T ss_dssp TCEETTEECEEEECSSC
T ss_pred CCEECCcEEEEEEccCC
Confidence 99999999999997654
No 286
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.54 E-value=5.7e-15 Score=112.29 Aligned_cols=75 Identities=23% Similarity=0.342 Sum_probs=67.0
Q ss_pred cccceEEEcCCCC------cCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEe------cCCCcEEEEEeCCHHHHHHHH
Q 016936 30 RHARRVYVGGLPP------LANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASNAM 97 (380)
Q Consensus 30 ~~~~~v~V~nLp~------~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~------~~~~g~afV~f~~~~~a~~ai 97 (380)
...++|||+|||. ++++++|+++|++||. |.++.+ ++++|||||+|.+.++|.+|+
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~------------i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai 71 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGK------------VVNMEFPIDEATGKTKGFLFVECGSMNDAKKII 71 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSC------------EEEEECCEETTTTEECSEEEEEESSHHHHHHHH
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCC------------EeEEEEEEcCCCCccceEEEEEECCHHHHHHHH
Confidence 4578999999999 9999999999999998 666665 346799999999999999999
Q ss_pred -HcCCceecC-ceEEEecCCC
Q 016936 98 -ALDGIIFEG-VAVRVRRPTD 116 (380)
Q Consensus 98 -~l~~~~i~g-~~i~v~~~~~ 116 (380)
.+|+..+.| ++|+|.++.+
T Consensus 72 ~~lng~~~~g~r~l~V~~a~~ 92 (100)
T 3ns6_A 72 KSFHGKRLDLKHRLFLYTMKD 92 (100)
T ss_dssp HHHTTCBSSSSCBCEEEESHH
T ss_pred HHhCCcccCCCeEEEEEECch
Confidence 799999999 9999998754
No 287
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.6e-14 Score=112.64 Aligned_cols=75 Identities=28% Similarity=0.440 Sum_probs=63.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC---CCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEE
Q 016936 150 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT---GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 226 (380)
Q Consensus 150 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~---~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v 226 (380)
...++|||+|||+.+++++|+++|++||.|. +.++.++.+ |+++|||||+|.+.++|++|++.++ .+.|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 3457999999999999999999999999999 888887666 7999999999999999999999882 244444444
Q ss_pred E
Q 016936 227 R 227 (380)
Q Consensus 227 ~ 227 (380)
.
T Consensus 83 ~ 83 (114)
T 2dnl_A 83 V 83 (114)
T ss_dssp E
T ss_pred c
Confidence 3
No 288
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=7.3e-15 Score=111.27 Aligned_cols=83 Identities=16% Similarity=0.116 Sum_probs=68.6
Q ss_pred hhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceecC
Q 016936 28 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 106 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~g 106 (380)
.....++|||+|||+++++++|+++|++||.|... ..+.+....+++|||||+|.+.++|++|+ .+++..|.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~------~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 84 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGS------VCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS 84 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTT------CEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccce------EEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 34557899999999999999999999999986432 12222223456899999999999999999 899999999
Q ss_pred ceEEEecCCC
Q 016936 107 VAVRVRRPTD 116 (380)
Q Consensus 107 ~~i~v~~~~~ 116 (380)
++|+|.++..
T Consensus 85 ~~l~V~~a~~ 94 (98)
T 2cqp_A 85 RKVKLVLGSG 94 (98)
T ss_dssp EECEEEESSC
T ss_pred eEEEEEEcCC
Confidence 9999998654
No 289
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.5e-14 Score=110.73 Aligned_cols=79 Identities=18% Similarity=0.294 Sum_probs=68.8
Q ss_pred hhcccceEEEcCCCCcCcHHHHHHHHHH-HHHhccCCCCCCCCeeEEEEec-----CCCcEEEEEeCCHHHHHHHH-HcC
Q 016936 28 ATRHARRVYVGGLPPLANEQAIATFFSQ-VMTAIGGNSAGPGDAVVNVYIN-----HEKKFAFVEMRTVEEASNAM-ALD 100 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~~~t~~~l~~~f~~-~G~i~~~~~~~~~~~i~~~~~~-----~~~g~afV~f~~~~~a~~ai-~l~ 100 (380)
...+.++|||+|||+++++++|+++|++ ||. |..+.+. .++|||||+|.+.++|.+|+ .++
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~------------v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 72 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPS------------CRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQ 72 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTT------------EEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTT
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCC------------eEEEEEEECCCCCccceEEEEECCHHHHHHHHHHcc
Confidence 3456799999999999999999999999 998 5555553 35799999999999999999 699
Q ss_pred Cce-ecCceEEEecCCCCC
Q 016936 101 GII-FEGVAVRVRRPTDYN 118 (380)
Q Consensus 101 ~~~-i~g~~i~v~~~~~~~ 118 (380)
+.. +.|++|+|.++....
T Consensus 73 g~~~~~g~~l~v~~a~~~~ 91 (104)
T 2dhg_A 73 GAVGLGSKPVRLSVAIPKA 91 (104)
T ss_dssp TCCSSSSSCCCCCBCCCCC
T ss_pred CCcccCCEeEEEEEccCCC
Confidence 999 999999999976543
No 290
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.54 E-value=4.5e-14 Score=110.77 Aligned_cols=75 Identities=19% Similarity=0.209 Sum_probs=67.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceE-EEEEEcChhHHHHHHHHhCCCeeCC--eEEEEEEc
Q 016936 153 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGY-GFCVYQDPAVTDIACAALNGLKMGD--KTLTVRRA 229 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~-afV~f~~~~~A~~Ai~~l~g~~~~g--~~i~v~~~ 229 (380)
..|||+||++.+++++|+++|++||.|.+|++... .|| |||+|.+.++|..|++.|||..|.| +.|+|.++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 46789999999999999999999999999998652 276 9999999999999999999999987 69999999
Q ss_pred ccCC
Q 016936 230 TASS 233 (380)
Q Consensus 230 ~~~~ 233 (380)
.++.
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 7764
No 291
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=7.1e-15 Score=112.44 Aligned_cols=80 Identities=18% Similarity=0.367 Sum_probs=69.6
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec------CCCcEEEEEeCCHHHHHHHH-Hc
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN------HEKKFAFVEMRTVEEASNAM-AL 99 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~------~~~g~afV~f~~~~~a~~ai-~l 99 (380)
....+.++|||+|||+++++++|+++|++||. |..+.+. .++|||||+|.+.++|.+|+ .+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~------------i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 77 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGS------------ISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGV 77 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCC------------EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCC------------eEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHc
Confidence 44567899999999999999999999999997 5555553 34689999999999999999 69
Q ss_pred CCceecCceEEEecCCCCC
Q 016936 100 DGIIFEGVAVRVRRPTDYN 118 (380)
Q Consensus 100 ~~~~i~g~~i~v~~~~~~~ 118 (380)
++..|.|++|+|.++....
T Consensus 78 ~g~~~~g~~l~v~~a~~~~ 96 (103)
T 2cq0_A 78 SGFGYDHLILNVEWAKPST 96 (103)
T ss_dssp TTCEETTEECEEEESSCCC
T ss_pred CCCeeCCcEEEEEECCCCC
Confidence 9999999999999976653
No 292
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.8e-14 Score=110.97 Aligned_cols=77 Identities=18% Similarity=0.282 Sum_probs=68.9
Q ss_pred hcccceEEE--cCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCcee-
Q 016936 29 TRHARRVYV--GGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIF- 104 (380)
Q Consensus 29 ~~~~~~v~V--~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i- 104 (380)
..+.++||| +||+.++++++|+++|++||. |.++.+..++|||||+|.+.++|++|+ .|||..+
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~------------v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~ 89 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGL------------VDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVV 89 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSC------------EEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCC------------eEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEc
Confidence 456789999 779999999999999999997 788888888999999999999999999 7999988
Q ss_pred ----cCceEEEecCCCC
Q 016936 105 ----EGVAVRVRRPTDY 117 (380)
Q Consensus 105 ----~g~~i~v~~~~~~ 117 (380)
.|++|.|.++...
T Consensus 90 ~~lg~g~~l~v~~a~~~ 106 (114)
T 2cq2_A 90 DDLGQKITLYLNFVEKV 106 (114)
T ss_dssp CTTSCEEECEEEEESCC
T ss_pred cccCCCcEEEEEecccC
Confidence 6789999886544
No 293
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=3.4e-14 Score=107.36 Aligned_cols=76 Identities=24% Similarity=0.364 Sum_probs=69.5
Q ss_pred hhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceecC
Q 016936 28 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 106 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~g 106 (380)
...+.++|||+|| ++++++|+++|++||. |..+.+.+++|||||+|.+.++|.+|+ .|++..|.|
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~------------i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 76 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGN------------IIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVES 76 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSC------------EEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETT
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCC------------EEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 3456799999996 8999999999999997 788888899999999999999999999 899999999
Q ss_pred ceEEEecCCCC
Q 016936 107 VAVRVRRPTDY 117 (380)
Q Consensus 107 ~~i~v~~~~~~ 117 (380)
++|+|.++...
T Consensus 77 ~~l~v~~a~~~ 87 (97)
T 1x5p_A 77 VQLKVNIARKQ 87 (97)
T ss_dssp EEEEEECCSSC
T ss_pred eEEEEEECCCC
Confidence 99999997654
No 294
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=5.1e-14 Score=108.79 Aligned_cols=79 Identities=24% Similarity=0.373 Sum_probs=68.0
Q ss_pred hcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec-------CCCcEEEEEeCCHHHHHHHH-HcC
Q 016936 29 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN-------HEKKFAFVEMRTVEEASNAM-ALD 100 (380)
Q Consensus 29 ~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~-------~~~g~afV~f~~~~~a~~ai-~l~ 100 (380)
+.+.++|||+|||.++++++|+++|++||.. |.++.+. .++|||||+|.+.++|.+|+ .++
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~-----------v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 73 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEG-----------VLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLM 73 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTT-----------EEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTT
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCC-----------ceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhh
Confidence 3467999999999999999999999999861 5555554 57899999999999999999 686
Q ss_pred --CceecCceEEEecCCCCC
Q 016936 101 --GIIFEGVAVRVRRPTDYN 118 (380)
Q Consensus 101 --~~~i~g~~i~v~~~~~~~ 118 (380)
+..+.|++|+|.++....
T Consensus 74 ~g~~~~~g~~l~V~~a~~~~ 93 (109)
T 2dis_A 74 PGRIQLWGHQIAVDWAEPEI 93 (109)
T ss_dssp TCCSCBTTBCCEEEESCSSC
T ss_pred CCCceecCCeEEEEEcCCCC
Confidence 589999999999987654
No 295
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.53 E-value=5.4e-15 Score=109.67 Aligned_cols=75 Identities=23% Similarity=0.338 Sum_probs=66.9
Q ss_pred cccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceecCce
Q 016936 30 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 108 (380)
Q Consensus 30 ~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~g~~ 108 (380)
+..++|||+|||+++++++|+++|++| . |..+.+.+++|||||+|.+.++|++|+ .+++..+.|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~------------v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 69 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-D------------LKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKD 69 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-C------------CCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-C------------eEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcE
Confidence 467899999999999999999999999 6 444555588999999999999999999 79999999999
Q ss_pred EEEecCCCC
Q 016936 109 VRVRRPTDY 117 (380)
Q Consensus 109 i~v~~~~~~ 117 (380)
|+|.++...
T Consensus 70 l~V~~a~~~ 78 (88)
T 1wg1_A 70 LIVQLQPTD 78 (88)
T ss_dssp EEEEECCCC
T ss_pred EEEEEcCCC
Confidence 999997543
No 296
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.53 E-value=1.4e-14 Score=112.19 Aligned_cols=78 Identities=26% Similarity=0.285 Sum_probs=69.0
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecC------CCcEEEEEeCCHHHHHHHH-Hc
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH------EKKFAFVEMRTVEEASNAM-AL 99 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~------~~g~afV~f~~~~~a~~ai-~l 99 (380)
....+.++|||+|||..+++++|+++|++||. |..+.+.. ++|||||+|.+.++|.+|+ .+
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l 88 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGE------------IKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEAL 88 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSC------------EEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------EEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHc
Confidence 34567899999999999999999999999997 66776643 4799999999999999999 69
Q ss_pred CCceecCceEEEecCCC
Q 016936 100 DGIIFEGVAVRVRRPTD 116 (380)
Q Consensus 100 ~~~~i~g~~i~v~~~~~ 116 (380)
++..|.|++|+|.++..
T Consensus 89 ~g~~~~g~~l~V~~a~~ 105 (110)
T 1oo0_B 89 NGAEIMGQTIQVDWCFV 105 (110)
T ss_dssp TTCEETTEECEEEESEE
T ss_pred CCCEECCcEEEEEEccc
Confidence 99999999999998654
No 297
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=8.6e-15 Score=113.56 Aligned_cols=80 Identities=19% Similarity=0.304 Sum_probs=69.6
Q ss_pred hhhcccceEEEcCCCCcCcHHHHH---HHHHHHHHhccCCCCCCCCeeEEEEecC---------CCcEEEEEeCCHHHHH
Q 016936 27 QATRHARRVYVGGLPPLANEQAIA---TFFSQVMTAIGGNSAGPGDAVVNVYINH---------EKKFAFVEMRTVEEAS 94 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~---~~f~~~G~i~~~~~~~~~~~i~~~~~~~---------~~g~afV~f~~~~~a~ 94 (380)
......++|||+|||+++++++|+ ++|++||. |..+.+.. ++|||||+|.+.++|+
T Consensus 10 ~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~------------i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~ 77 (111)
T 2cpi_A 10 VRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGK------------IHKVVINNSTSYAGSQGPSASAYVTYIRSEDAL 77 (111)
T ss_dssp CCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSC------------EEEEEEECCSSCCSSSCCCEEEEEEESSHHHHH
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCC------------EEEEEEecCCCcCccCCCCeEEEEEECcHHHHH
Confidence 445568899999999999999999 99999998 56666543 3489999999999999
Q ss_pred HHH-HcCCceecCceEEEecCCCCC
Q 016936 95 NAM-ALDGIIFEGVAVRVRRPTDYN 118 (380)
Q Consensus 95 ~ai-~l~~~~i~g~~i~v~~~~~~~ 118 (380)
+|+ .||+..|.|++|+|.++..+.
T Consensus 78 ~Ai~~lng~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 78 RAIQCVNNVVVDGRTLKASLGTTKY 102 (111)
T ss_dssp HHHHHHTTEEETTEEEEEESCCCCS
T ss_pred HHHHHhCCCEECCEEEEEEeccccc
Confidence 999 799999999999999987654
No 298
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.53 E-value=1.5e-14 Score=111.43 Aligned_cols=76 Identities=17% Similarity=0.248 Sum_probs=67.2
Q ss_pred hhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec-----CCCcEEEEEeCCHHHHHHHH-HcCC
Q 016936 28 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN-----HEKKFAFVEMRTVEEASNAM-ALDG 101 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~-----~~~g~afV~f~~~~~a~~ai-~l~~ 101 (380)
.....++|||+|||+.+++++|+++|++||. |..+.+. +++|||||+|.+.++|++|+ .|++
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 92 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGT------------LKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNG 92 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSC------------EEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 3466899999999999999999999999998 5555554 45799999999999999999 6999
Q ss_pred ceecCceEEEecCC
Q 016936 102 IIFEGVAVRVRRPT 115 (380)
Q Consensus 102 ~~i~g~~i~v~~~~ 115 (380)
..|.|++|+|.++.
T Consensus 93 ~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 93 VPLDGRPMNIQLVT 106 (107)
T ss_dssp CEETTEECEEEEEC
T ss_pred CEeCCcEEEEEEeC
Confidence 99999999999854
No 299
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.53 E-value=2.6e-14 Score=105.62 Aligned_cols=71 Identities=24% Similarity=0.541 Sum_probs=65.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhc----C-------CeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCee
Q 016936 151 GPDRVFVGGLPYYFTETQIKELLESF----G-------TLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKM 219 (380)
Q Consensus 151 ~~~~l~V~nlp~~~t~~~l~~~F~~~----G-------~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 219 (380)
..++|||+|||+.+++++|+++|++| | .|..+.+.++ +|||||+|.+.++|++|+ .||+..+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 34799999999999999999999999 8 8999988654 689999999999999999 8999999
Q ss_pred CCeEEEEEE
Q 016936 220 GDKTLTVRR 228 (380)
Q Consensus 220 ~g~~i~v~~ 228 (380)
.|+.|+|++
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999974
No 300
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.53 E-value=5.3e-15 Score=116.03 Aligned_cols=82 Identities=20% Similarity=0.229 Sum_probs=68.3
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHH---hccCCCCCCCCeeEEEE--ecCCCcEEEEEeCCHHHHHHHHHcCC
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMT---AIGGNSAGPGDAVVNVY--INHEKKFAFVEMRTVEEASNAMALDG 101 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~---i~~~~~~~~~~~i~~~~--~~~~~g~afV~f~~~~~a~~ai~l~~ 101 (380)
....+.++|||+|||+++|+++|+++|++||. |.. |..+. .++++|||||+|.+.++|++|+.+++
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~---------v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g 82 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAG---------VHFIYTREGRQSGEAFVELESEDDVKLALKKDR 82 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGG---------EEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTT
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCcee---------EEEEECCCCCCCeEEEEEECCHHHHHHHHhcCC
Confidence 44567899999999999999999999999987 332 22222 24567999999999999999999999
Q ss_pred ceecCceEEEecCCCC
Q 016936 102 IIFEGVAVRVRRPTDY 117 (380)
Q Consensus 102 ~~i~g~~i~v~~~~~~ 117 (380)
..|.|+.|+|.++...
T Consensus 83 ~~~~gr~i~V~~a~~~ 98 (118)
T 2db1_A 83 ESMGHRYIEVFKSHRT 98 (118)
T ss_dssp EEETTEEEEEEEECHH
T ss_pred CeECCeEEEEEECCHH
Confidence 9999999999986543
No 301
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.53 E-value=9e-15 Score=110.32 Aligned_cols=80 Identities=18% Similarity=0.255 Sum_probs=69.2
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceec
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFE 105 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~ 105 (380)
....+.++|||+|||..+++++|+++|++||.|.. + .....++|||||+|.+.++|.+|+ .+++..|.
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~---------~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 79 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRL---------V--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEID 79 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECC---------E--EETTEEEEEEEEEESSHHHHHHHHHHTTEEEET
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEE---------e--CCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 44567899999999999999999999999988521 2 344567899999999999999999 69999999
Q ss_pred CceEEEecCCCC
Q 016936 106 GVAVRVRRPTDY 117 (380)
Q Consensus 106 g~~i~v~~~~~~ 117 (380)
|++|+|.++..+
T Consensus 80 g~~l~v~~a~~~ 91 (96)
T 1fjc_A 80 GRSVSLYYTGEK 91 (96)
T ss_dssp TEEEEEEECSSS
T ss_pred CeEEEEEEcCCC
Confidence 999999997654
No 302
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=2.6e-14 Score=111.37 Aligned_cols=78 Identities=21% Similarity=0.213 Sum_probs=67.8
Q ss_pred hhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecC-----CCcEEEEEeCCHHHHHHHH-HcCC
Q 016936 28 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH-----EKKFAFVEMRTVEEASNAM-ALDG 101 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~-----~~g~afV~f~~~~~a~~ai-~l~~ 101 (380)
.....++|||+|||.++++++|+++|++||. |..+.+.. ++|||||+|.+.++|++|+ .|++
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~------------i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 78 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGV------------VVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNG 78 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSC------------EEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 3456899999999999999999999999997 55555543 3789999999999999999 6999
Q ss_pred ceecCceEEEecCCCC
Q 016936 102 IIFEGVAVRVRRPTDY 117 (380)
Q Consensus 102 ~~i~g~~i~v~~~~~~ 117 (380)
..|.|++|+|.++...
T Consensus 79 ~~~~g~~l~v~~a~~~ 94 (114)
T 2do0_A 79 QLLFDRPMHVKMDERA 94 (114)
T ss_dssp CEETTEECEEEECSCC
T ss_pred CEeCCCEEEEEEcccC
Confidence 9999999999987543
No 303
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.8e-14 Score=109.27 Aligned_cols=76 Identities=20% Similarity=0.340 Sum_probs=66.4
Q ss_pred cccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEe-------cCCCcEEEEEeCCHHHHHHHHHcCCc
Q 016936 30 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI-------NHEKKFAFVEMRTVEEASNAMALDGI 102 (380)
Q Consensus 30 ~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~-------~~~~g~afV~f~~~~~a~~ai~l~~~ 102 (380)
.+.++|||+|||+++++++|+++|++|| | ..+.+ .+++|||||+|.+.++|++|+.+++.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i------------~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~ 79 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-I------------SAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEE 79 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-E------------EEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-c------------eEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCC
Confidence 4569999999999999999999999997 4 33443 34589999999999999999999999
Q ss_pred eecCceEEEecCCCCC
Q 016936 103 IFEGVAVRVRRPTDYN 118 (380)
Q Consensus 103 ~i~g~~i~v~~~~~~~ 118 (380)
.|.|++|+|.++....
T Consensus 80 ~~~g~~l~V~~a~~~~ 95 (104)
T 1wi8_A 80 SLGNKRIRVDVADQAQ 95 (104)
T ss_dssp EETTEECEEEECCCCC
T ss_pred EeCCcEEEEEEccCCC
Confidence 9999999999976653
No 304
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.53 E-value=2.2e-14 Score=118.01 Aligned_cols=75 Identities=23% Similarity=0.337 Sum_probs=65.2
Q ss_pred ccceEEEcCCCCcCcHHHHHHHHHHHH--HhccCCCCCCCCeeEEEEe------cCCCcEEEEEeCCHHHHHHHH-HcCC
Q 016936 31 HARRVYVGGLPPLANEQAIATFFSQVM--TAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASNAM-ALDG 101 (380)
Q Consensus 31 ~~~~v~V~nLp~~~t~~~l~~~f~~~G--~i~~~~~~~~~~~i~~~~~------~~~~g~afV~f~~~~~a~~ai-~l~~ 101 (380)
..++|||+|||+++++++|+++|++|| . |.++.+ ++++|||||+|.+.++|.+|| .|++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~------------v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng 121 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYD------------VVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPG 121 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCC------------EEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCcc------------EEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC
Confidence 568999999999999999999999999 5 555554 345799999999999999999 7899
Q ss_pred ceecCceEEEecCCCC
Q 016936 102 IIFEGVAVRVRRPTDY 117 (380)
Q Consensus 102 ~~i~g~~i~v~~~~~~ 117 (380)
..|.|++|+|.++...
T Consensus 122 ~~~~Gr~l~V~~a~~~ 137 (156)
T 3n9u_C 122 KVLNGEKVDVRPATRQ 137 (156)
T ss_dssp CEETTEECEEEECCHH
T ss_pred CEECCeEeEEEEcCCC
Confidence 9999999999987653
No 305
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.52 E-value=8.8e-15 Score=110.39 Aligned_cols=76 Identities=14% Similarity=0.305 Sum_probs=66.2
Q ss_pred hhcccceEEEcCCCC-cCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceec
Q 016936 28 ATRHARRVYVGGLPP-LANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFE 105 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~-~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~ 105 (380)
...+.++|||+|||. .+++++|+++|++||. |.++.+. +|||||+|.+.++|.+|+ .+++..+.
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~------------v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~~~ 71 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGH------------IMQINIK--NAFGFIQFDNPQSVRDAIECESQEMNF 71 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCC------------CCEEEEE--TTEEEEEESCHHHHHHHHHHHTCSSCB
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCC------------EEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 456789999999998 9999999999999998 5556653 899999999999999999 69999999
Q ss_pred CceEEEecCCCC
Q 016936 106 GVAVRVRRPTDY 117 (380)
Q Consensus 106 g~~i~v~~~~~~ 117 (380)
|++|+|.++...
T Consensus 72 g~~l~V~~a~~~ 83 (96)
T 2kvi_A 72 GKKLILEVSSSN 83 (96)
T ss_dssp TTTBCEEEEECC
T ss_pred CcEEEEEEcCcC
Confidence 999999987554
No 306
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=4.6e-15 Score=117.53 Aligned_cols=85 Identities=18% Similarity=0.170 Sum_probs=70.3
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHHHcCCceecC
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEG 106 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai~l~~~~i~g 106 (380)
.+....++|||+|||+++++++|+++|++||.|... ..+.+...++++|||||+|.+.++|.+||.+++..|.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~------~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~g 93 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDS------IYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGN 93 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTT------CEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTT
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccce------EEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECC
Confidence 345677999999999999999999999999986431 11222234566899999999999999999999999999
Q ss_pred ceEEEecCCCC
Q 016936 107 VAVRVRRPTDY 117 (380)
Q Consensus 107 ~~i~v~~~~~~ 117 (380)
+.|+|.++...
T Consensus 94 r~i~V~~a~~~ 104 (124)
T 1wel_A 94 RFIQVHPITKK 104 (124)
T ss_dssp SCBEEEEECHH
T ss_pred cEEEEEECCHH
Confidence 99999987543
No 307
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.52 E-value=6.4e-15 Score=110.89 Aligned_cols=80 Identities=18% Similarity=0.170 Sum_probs=65.2
Q ss_pred cccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceecCce
Q 016936 30 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 108 (380)
Q Consensus 30 ~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~g~~ 108 (380)
...++|||+|||+++++++|+++|++||.|... ..+.+....+++|||||+|.+.++|++|+ .+|+..|.|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~------~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 86 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGS------VCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRK 86 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTC------CEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccce------EEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcE
Confidence 346899999999999999999999999986432 11222223356799999999999999999 69999999999
Q ss_pred EEEecCC
Q 016936 109 VRVRRPT 115 (380)
Q Consensus 109 i~v~~~~ 115 (380)
|+|.++.
T Consensus 87 l~v~~a~ 93 (95)
T 2ek1_A 87 VKLSGPS 93 (95)
T ss_dssp CEEECCC
T ss_pred EEEEecc
Confidence 9999854
No 308
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.7e-14 Score=110.56 Aligned_cols=78 Identities=22% Similarity=0.235 Sum_probs=66.7
Q ss_pred hhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEE-EEe-----cCCCcEEEEEeCCHHHHHHHHHcCC
Q 016936 28 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVN-VYI-----NHEKKFAFVEMRTVEEASNAMALDG 101 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~-~~~-----~~~~g~afV~f~~~~~a~~ai~l~~ 101 (380)
.....++|||+|||+++++++|+++|++||. |.. +.+ ++++|||||+|.+.++|++|+..++
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~------------v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~ 78 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEI------------VPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHK 78 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCE------------EEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------cceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCc
Confidence 3456799999999999999999999999987 433 443 4568999999999999999996699
Q ss_pred ceecCceEEEecCCCC
Q 016936 102 IIFEGVAVRVRRPTDY 117 (380)
Q Consensus 102 ~~i~g~~i~v~~~~~~ 117 (380)
..+.|+.|+|.++...
T Consensus 79 ~~~~gr~i~v~~~~~~ 94 (104)
T 1wg5_A 79 ERIGHRYIEIFKSSRA 94 (104)
T ss_dssp CCSSSSCCEEEEECTT
T ss_pred chhCCcEEEEEECCHH
Confidence 9999999999886544
No 309
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=7.8e-15 Score=112.38 Aligned_cols=80 Identities=33% Similarity=0.487 Sum_probs=68.6
Q ss_pred hhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec------CCCcEEEEEeCCHHHHHHHH-HcC
Q 016936 28 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN------HEKKFAFVEMRTVEEASNAM-ALD 100 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~------~~~g~afV~f~~~~~a~~ai-~l~ 100 (380)
.+...++|||+|||..+++++|+++|++||.| ..+.+. .++|||||+|.+.++|.+|+ .++
T Consensus 4 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i------------~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 71 (104)
T 1p1t_A 4 VDRSLRSVFVGNIPYEATEEQLKDIFSEVGPV------------VSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLN 71 (104)
T ss_dssp SHHHHSCEEEESCCTTSCHHHHHHHHHTTSCC------------SEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSS
T ss_pred cCCCccEEEEeCCCCcCCHHHHHHHHHhcCCe------------eEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 34567999999999999999999999999984 334432 34799999999999999999 799
Q ss_pred CceecCceEEEecCCCCCc
Q 016936 101 GIIFEGVAVRVRRPTDYNP 119 (380)
Q Consensus 101 ~~~i~g~~i~v~~~~~~~~ 119 (380)
+..+.|++|+|.++.....
T Consensus 72 g~~~~g~~l~v~~a~~~~~ 90 (104)
T 1p1t_A 72 GREFSGRALRVDNAASEKN 90 (104)
T ss_dssp SBSCSSSCBEEEETTCTTH
T ss_pred CCeeCCcEEEEEeCCCccc
Confidence 9999999999999876543
No 310
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.52 E-value=5.4e-14 Score=104.33 Aligned_cols=73 Identities=18% Similarity=0.347 Sum_probs=62.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCe--eCCeEEEEEE
Q 016936 151 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLK--MGDKTLTVRR 228 (380)
Q Consensus 151 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~--~~g~~i~v~~ 228 (380)
...+|||+|||+++++++|+++|++||.|.+|+++++ ++|||||+|.+.++|++ +++.. +.|+.|.|.+
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISN 80 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEE
Confidence 3469999999999999999999999999999999864 68999999999999983 45554 5699999999
Q ss_pred cccC
Q 016936 229 ATAS 232 (380)
Q Consensus 229 ~~~~ 232 (380)
+.++
T Consensus 81 a~~k 84 (89)
T 3d2w_A 81 AEPK 84 (89)
T ss_dssp CC--
T ss_pred cCCC
Confidence 8764
No 311
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.52 E-value=1.3e-14 Score=105.79 Aligned_cols=68 Identities=22% Similarity=0.380 Sum_probs=60.8
Q ss_pred cceEEEcCCCCcC------cHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec----CCCcEEEEEeCCHHHHHHHH-HcC
Q 016936 32 ARRVYVGGLPPLA------NEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN----HEKKFAFVEMRTVEEASNAM-ALD 100 (380)
Q Consensus 32 ~~~v~V~nLp~~~------t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~----~~~g~afV~f~~~~~a~~ai-~l~ 100 (380)
+++|||+|||..+ ++++|+++|++||. |.++.+. +++|||||+|.+.++|.+|+ .+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~------------i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~ln 68 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGK------------ITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNAD 68 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCC------------EEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCC------------eEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhc
Confidence 4799999999999 78999999999998 6666654 46899999999999999999 799
Q ss_pred CceecCc-eEEE
Q 016936 101 GIIFEGV-AVRV 111 (380)
Q Consensus 101 ~~~i~g~-~i~v 111 (380)
+..+.|+ +|+|
T Consensus 69 g~~~~g~~~l~V 80 (81)
T 2krb_A 69 GYKLDKQHTFRV 80 (81)
T ss_dssp SCCCSSSSCCCC
T ss_pred CcccCCceeEEe
Confidence 9999999 8876
No 312
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.52 E-value=7e-15 Score=109.54 Aligned_cols=76 Identities=14% Similarity=0.178 Sum_probs=60.2
Q ss_pred ceEEEcCCCCcCcHHHHHHHHHHHH--HhccCCCCCCCCeeEEEE---ecCCCcEEEEEeCCHHHHHHHH-HcCCceecC
Q 016936 33 RRVYVGGLPPLANEQAIATFFSQVM--TAIGGNSAGPGDAVVNVY---INHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 106 (380)
Q Consensus 33 ~~v~V~nLp~~~t~~~l~~~f~~~G--~i~~~~~~~~~~~i~~~~---~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~g 106 (380)
.+|||+|||+++++++|+++|++|| .|.. +..+. .++++|||||+|.+.++|++|+ .+++..+.|
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~---------v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~g 72 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILE---------IKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHG 72 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCC---------EEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSS
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEE---------EEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 5799999999999999999999999 6432 22222 2356799999999999999999 799999999
Q ss_pred ceEEEecCCCC
Q 016936 107 VAVRVRRPTDY 117 (380)
Q Consensus 107 ~~i~v~~~~~~ 117 (380)
++|+|.++...
T Consensus 73 r~i~V~~~~~~ 83 (90)
T 3p5t_L 73 QNPVVTPSNKL 83 (90)
T ss_dssp CCCEECCC---
T ss_pred EEEEEEECCCC
Confidence 99999986553
No 313
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=2.1e-14 Score=107.15 Aligned_cols=77 Identities=19% Similarity=0.317 Sum_probs=66.3
Q ss_pred hhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEe-----cCCCcEEEEEeCCHHHHHHHHHcCCc
Q 016936 28 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI-----NHEKKFAFVEMRTVEEASNAMALDGI 102 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~-----~~~~g~afV~f~~~~~a~~ai~l~~~ 102 (380)
.....++|||+|||+++++++|+++|++| .| ..+.+ ++++|||||+|.+.++|.+|+.+++.
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i------------~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~ 72 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KP------------VAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNRE 72 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CC------------SEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-Cc------------eEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCc
Confidence 34678999999999999999999999999 63 33333 34579999999999999999999999
Q ss_pred eecCceEEEecCCCC
Q 016936 103 IFEGVAVRVRRPTDY 117 (380)
Q Consensus 103 ~i~g~~i~v~~~~~~ 117 (380)
.|.|++|+|.++...
T Consensus 73 ~~~gr~i~v~~a~~~ 87 (91)
T 2dgw_A 73 YMGGRYIEVFREKSG 87 (91)
T ss_dssp EETTEEEEEEEESSC
T ss_pred eeCCcEEEEEECCcC
Confidence 999999999987654
No 314
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.51 E-value=1.4e-14 Score=103.99 Aligned_cols=69 Identities=16% Similarity=0.352 Sum_probs=61.4
Q ss_pred eEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEe------cCCCcEEEEEeCCHHHHHHHHHcCCceecCc
Q 016936 34 RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASNAMALDGIIFEGV 107 (380)
Q Consensus 34 ~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~------~~~~g~afV~f~~~~~a~~ai~l~~~~i~g~ 107 (380)
+|||+|||+++++++|+++|++||.| .++.+ +.++|||||+|.+.++|++|+++++..+.|+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i------------~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~ 68 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKV------------DDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNK 68 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCC------------SEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCE------------EEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCE
Confidence 59999999999999999999999984 44443 3457999999999999999999999999999
Q ss_pred eEEEecC
Q 016936 108 AVRVRRP 114 (380)
Q Consensus 108 ~i~v~~~ 114 (380)
+|+|.++
T Consensus 69 ~l~v~~A 75 (75)
T 2mss_A 69 MVECKKA 75 (75)
T ss_dssp CCEEECC
T ss_pred EEEEEeC
Confidence 9999874
No 315
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=5.4e-14 Score=107.48 Aligned_cols=79 Identities=25% Similarity=0.395 Sum_probs=67.6
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEe------cCCCcEEEEEeCCHHHHHHHHHcC
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASNAMALD 100 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~------~~~~g~afV~f~~~~~a~~ai~l~ 100 (380)
....+.++|||+|||.++++++|+++|++||. |..+.+ ..++|||||+|.+.++|.+|+. +
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~------------i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~ 76 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGE------------VLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-Q 76 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSC------------EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-S
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCC------------eEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-c
Confidence 45567899999999999999999999999998 555554 3346899999999999999997 4
Q ss_pred CceecCceEEEecCCCCC
Q 016936 101 GIIFEGVAVRVRRPTDYN 118 (380)
Q Consensus 101 ~~~i~g~~i~v~~~~~~~ 118 (380)
+..|.|++|+|.++..+.
T Consensus 77 ~~~~~g~~l~v~~a~~~~ 94 (103)
T 2cqg_A 77 RHMIDGRWCDCKLPNSKQ 94 (103)
T ss_dssp CEEETTEEEEEECCCTTC
T ss_pred CCeeCCeEEEEEecCCCC
Confidence 778999999999987654
No 316
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=2e-14 Score=110.65 Aligned_cols=74 Identities=20% Similarity=0.260 Sum_probs=64.7
Q ss_pred cccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEe-----cCCCcEEEEEeCCHHHHHHHHHcCCcee
Q 016936 30 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI-----NHEKKFAFVEMRTVEEASNAMALDGIIF 104 (380)
Q Consensus 30 ~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~-----~~~~g~afV~f~~~~~a~~ai~l~~~~i 104 (380)
.+.++|||+|||++++++||+++|++| . |.++.+ ++++|||||+|.+.++|.+|+.+++..|
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~------------v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~ 80 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-R------------VDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLM 80 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-C------------CCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-C------------eeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeE
Confidence 446899999999999999999999999 5 445554 3468999999999999999999999999
Q ss_pred cCceEEEecCCC
Q 016936 105 EGVAVRVRRPTD 116 (380)
Q Consensus 105 ~g~~i~v~~~~~ 116 (380)
.|+.|.|..+..
T Consensus 81 ~gr~i~V~~a~~ 92 (109)
T 2dnn_A 81 IQRYVEVSPATE 92 (109)
T ss_dssp TTEEEEEEECCH
T ss_pred CCeEEEEEECCc
Confidence 999999987654
No 317
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.51 E-value=5.2e-15 Score=118.54 Aligned_cols=81 Identities=21% Similarity=0.244 Sum_probs=68.3
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHH---hccCCCCCCCCeeEEEE--ecCCCcEEEEEeCCHHHHHHHHHcCC
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMT---AIGGNSAGPGDAVVNVY--INHEKKFAFVEMRTVEEASNAMALDG 101 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~---i~~~~~~~~~~~i~~~~--~~~~~g~afV~f~~~~~a~~ai~l~~ 101 (380)
....+.++|||+|||+++|+++|+++|++||. |.. |..+. .++++|||||+|.+.++|++|+.+++
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~---------v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g 109 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAG---------VHFIYTREGRQSGEAFVELGSEDDVKMALKKDR 109 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTT---------EEEEECSSSCEEEEEEEECSSHHHHHHHHTTTE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeE---------EEEEECCCCCCCeEEEEEECCHHHHHHHHhcCC
Confidence 45567899999999999999999999999997 322 32222 24568999999999999999999999
Q ss_pred ceecCceEEEecCCC
Q 016936 102 IIFEGVAVRVRRPTD 116 (380)
Q Consensus 102 ~~i~g~~i~v~~~~~ 116 (380)
..|.|++|+|.++..
T Consensus 110 ~~l~gr~i~V~~a~~ 124 (136)
T 2hgl_A 110 ESMGHRYIEVFKSHR 124 (136)
T ss_dssp EESSSSEEEEEECCH
T ss_pred CEECCEEEEEEECCh
Confidence 999999999998653
No 318
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.7e-15 Score=109.76 Aligned_cols=75 Identities=19% Similarity=0.313 Sum_probs=66.0
Q ss_pred hcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec------CCCcEEEEEeCCHHHHHHHH-HcCC
Q 016936 29 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN------HEKKFAFVEMRTVEEASNAM-ALDG 101 (380)
Q Consensus 29 ~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~------~~~g~afV~f~~~~~a~~ai-~l~~ 101 (380)
..+.++|||+|||+++++++|+++|++||. |..+.+. .++|||||+|.+.++|.+|+ .+|+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~------------i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 69 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGK------------IVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKA 69 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSC------------EEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcC
Confidence 356799999999999999999999999997 6666653 34799999999999999999 6999
Q ss_pred ceecCceEEEecCC
Q 016936 102 IIFEGVAVRVRRPT 115 (380)
Q Consensus 102 ~~i~g~~i~v~~~~ 115 (380)
..+.|+.|++.++.
T Consensus 70 ~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 70 SGVQAQMAKQSGPS 83 (85)
T ss_dssp HTCCEESCCSSCCC
T ss_pred CeEeeEEEeecCCC
Confidence 99999999988754
No 319
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.51 E-value=1.2e-14 Score=104.26 Aligned_cols=69 Identities=20% Similarity=0.379 Sum_probs=61.0
Q ss_pred eEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEe------cCCCcEEEEEeCCHHHHHHHHHcCCceecCc
Q 016936 34 RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASNAMALDGIIFEGV 107 (380)
Q Consensus 34 ~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~------~~~~g~afV~f~~~~~a~~ai~l~~~~i~g~ 107 (380)
+|||+|||+++++++|+++|++||. |.++.+ +.++|||||+|.+.++|.+|+.+++..+.|+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~------------i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~ 68 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGE------------VESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLS 68 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSC------------CSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTB
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCE
Confidence 6999999999999999999999998 444444 4568999999999999999998799999999
Q ss_pred eEEEecC
Q 016936 108 AVRVRRP 114 (380)
Q Consensus 108 ~i~v~~~ 114 (380)
+|+|.++
T Consensus 69 ~l~v~~a 75 (75)
T 1iqt_A 69 KCEIKVA 75 (75)
T ss_dssp CCCEEEC
T ss_pred EEEEEEC
Confidence 9999763
No 320
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=4.4e-14 Score=106.04 Aligned_cols=77 Identities=25% Similarity=0.403 Sum_probs=65.9
Q ss_pred hcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCc-EEEEEeCCHHHHHHHHHcCCceecCc
Q 016936 29 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKK-FAFVEMRTVEEASNAMALDGIIFEGV 107 (380)
Q Consensus 29 ~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g-~afV~f~~~~~a~~ai~l~~~~i~g~ 107 (380)
....++|||+|||.++++++|+++|++||. |..+...+..+ ||||+|.+.++|.+|+.+++..|.|+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~------------v~~v~~~~~~g~~afV~f~~~~~a~~ai~l~g~~~~g~ 72 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGP------------VASVVMDKDKGVFAIVEMGDVGAREAVLSQSQHSLGGH 72 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSC------------EEEEEECSSSCCEEEEEESSHHHHHHHHTCSCCEETTE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCC------------eEEEEEcCCCCcEEEEEECCHHHHHHHHhcCCeEECCE
Confidence 456789999999999999999999999998 55554333222 99999999999999999999999999
Q ss_pred eEEEecCCCC
Q 016936 108 AVRVRRPTDY 117 (380)
Q Consensus 108 ~i~v~~~~~~ 117 (380)
+|+|.++..+
T Consensus 73 ~l~V~~a~~~ 82 (94)
T 2e5g_A 73 RLRVRPREQK 82 (94)
T ss_dssp ECCCBCSCCS
T ss_pred EEEEEECCcC
Confidence 9999987654
No 321
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.50 E-value=3e-14 Score=113.11 Aligned_cols=78 Identities=26% Similarity=0.299 Sum_probs=69.1
Q ss_pred hhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecC------CCcEEEEEeCCHHHHHHHH-HcC
Q 016936 28 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH------EKKFAFVEMRTVEEASNAM-ALD 100 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~------~~g~afV~f~~~~~a~~ai-~l~ 100 (380)
...+.++|||+|||+.+++++|+++|++||. |..+.+.. ++|||||+|.+.++|++|+ .|+
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 85 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGE------------IKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLN 85 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSC------------EEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 4456899999999999999999999999997 67776643 3799999999999999999 799
Q ss_pred CceecCceEEEecCCCC
Q 016936 101 GIIFEGVAVRVRRPTDY 117 (380)
Q Consensus 101 ~~~i~g~~i~v~~~~~~ 117 (380)
+..|.|++|+|.++...
T Consensus 86 g~~~~g~~l~v~~a~~~ 102 (126)
T 3ex7_B 86 GQDLMGQPISVDWCFVR 102 (126)
T ss_dssp TCBSSSSBCEEEESEES
T ss_pred CCeeCCeEEEEEEecCC
Confidence 99999999999997543
No 322
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.50 E-value=2.6e-14 Score=111.50 Aligned_cols=75 Identities=21% Similarity=0.298 Sum_probs=66.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeE-----EE
Q 016936 151 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKT-----LT 225 (380)
Q Consensus 151 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~-----i~ 225 (380)
...+|||+|||+++++++|+++|++||.|..|.++.+ |||||+|.+.++|++|++.||+..+.|+. |+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 3479999999999999999999999999999999764 79999999999999999999999999998 77
Q ss_pred EEEcccC
Q 016936 226 VRRATAS 232 (380)
Q Consensus 226 v~~~~~~ 232 (380)
|..+.++
T Consensus 88 v~~~~~~ 94 (115)
T 3beg_B 88 VKVDGPR 94 (115)
T ss_dssp EEECC--
T ss_pred eccCCCC
Confidence 7766543
No 323
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.50 E-value=3.7e-14 Score=108.41 Aligned_cols=77 Identities=25% Similarity=0.417 Sum_probs=66.3
Q ss_pred hcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEe------cCCCcEEEEEeCCHHHHHHHHHcCCc
Q 016936 29 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASNAMALDGI 102 (380)
Q Consensus 29 ~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~------~~~~g~afV~f~~~~~a~~ai~l~~~ 102 (380)
..+.++|||+|||+++++++|+++|++|| |..+.+ .+++|||||+|.+.++|.+|+.+++.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-------------i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~ 78 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-------------IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGA 78 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-------------EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-------------ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCC
Confidence 34579999999999999999999999995 344444 23478999999999999999999999
Q ss_pred eecCceEEEecCCCCC
Q 016936 103 IFEGVAVRVRRPTDYN 118 (380)
Q Consensus 103 ~i~g~~i~v~~~~~~~ 118 (380)
.|.|++|+|.++....
T Consensus 79 ~~~g~~l~V~~a~~~~ 94 (103)
T 2dng_A 79 LLGDRSLRVDIAEGRK 94 (103)
T ss_dssp EETTEECEEEECCCCC
T ss_pred eECCeEEEEEEecCCC
Confidence 9999999999976543
No 324
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=2e-14 Score=110.26 Aligned_cols=80 Identities=20% Similarity=0.351 Sum_probs=68.6
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec------CCCcEEEEEeCCHHHHHHHHHcC
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN------HEKKFAFVEMRTVEEASNAMALD 100 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~------~~~g~afV~f~~~~~a~~ai~l~ 100 (380)
....+.++|||+|||+.+++++|+++|++||. |..+.+. .++|||||+|.+.++|.+|+..+
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~ 78 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGE------------VVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 78 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSC------------EEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhC
Confidence 34567899999999999999999999999998 5555543 34689999999999999999559
Q ss_pred CceecCceEEEecCCCCC
Q 016936 101 GIIFEGVAVRVRRPTDYN 118 (380)
Q Consensus 101 ~~~i~g~~i~v~~~~~~~ 118 (380)
+..|.|++|+|.++..+.
T Consensus 79 ~~~~~g~~l~V~~a~~~~ 96 (105)
T 2dh8_A 79 PHTLDGRNIDPKPCTPRG 96 (105)
T ss_dssp SEEETTEEEBCCCSCCSS
T ss_pred CCeECCEEEEEEEccCCC
Confidence 999999999999976553
No 325
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.50 E-value=1.4e-13 Score=108.92 Aligned_cols=78 Identities=15% Similarity=0.224 Sum_probs=68.4
Q ss_pred hhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec-----CCCcEEEEEeCCHHHHHHHH-HcCC
Q 016936 28 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN-----HEKKFAFVEMRTVEEASNAM-ALDG 101 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~-----~~~g~afV~f~~~~~a~~ai-~l~~ 101 (380)
.....++|||+|||..+++++|+++|++||. |..+.+. .++|||||+|.+.++|.+|+ .+++
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 98 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGT------------LKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKG 98 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSC------------CSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------eeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCC
Confidence 4567799999999999999999999999998 4445443 46899999999999999999 6999
Q ss_pred ceecCceEEEecCCCC
Q 016936 102 IIFEGVAVRVRRPTDY 117 (380)
Q Consensus 102 ~~i~g~~i~v~~~~~~ 117 (380)
..+.|++|+|.++...
T Consensus 99 ~~~~g~~l~V~~a~~~ 114 (124)
T 2kt5_A 99 VPLDGRPMDIQLVASQ 114 (124)
T ss_dssp EESSSCEEEEEEECCT
T ss_pred CEECCcEEEEEEeCCC
Confidence 9999999999997654
No 326
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.50 E-value=4.3e-14 Score=116.61 Aligned_cols=79 Identities=23% Similarity=0.402 Sum_probs=69.3
Q ss_pred hhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEe------cCCCcEEEEEeCCHHHHHHHH-HcC
Q 016936 28 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASNAM-ALD 100 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~------~~~~g~afV~f~~~~~a~~ai-~l~ 100 (380)
...+.++|||+|||..+++++|+++|++||. |..+.+ ..++|||||+|.+.++|++|+ .|+
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~ 102 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGD------------IKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYIN 102 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSC------------EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTT
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 4467899999999999999999999999998 556665 335689999999999999999 699
Q ss_pred CceecCceEEEecCCCCC
Q 016936 101 GIIFEGVAVRVRRPTDYN 118 (380)
Q Consensus 101 ~~~i~g~~i~v~~~~~~~ 118 (380)
+..|.|++|+|.|+....
T Consensus 103 g~~~~g~~l~V~~a~~~~ 120 (156)
T 1h2v_Z 103 GTRLDDRIIRTDWDAGFK 120 (156)
T ss_dssp TSEETTEECEEEEESCCC
T ss_pred CCEECCeEEEEEECCCCC
Confidence 999999999999986543
No 327
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.4e-14 Score=112.91 Aligned_cols=80 Identities=13% Similarity=0.107 Sum_probs=67.5
Q ss_pred hhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEe-----cCCCcEEEEEeCCHHHHHHHHHcCCc
Q 016936 28 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI-----NHEKKFAFVEMRTVEEASNAMALDGI 102 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~-----~~~~g~afV~f~~~~~a~~ai~l~~~ 102 (380)
...+.++|||+|||+++++++|+++|++||.+. ..+.+ ++++|||||+|.+.++|.+||.+++.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~-----------~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~ 79 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDE-----------NAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRK 79 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCS-----------TTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcC-----------CeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCC
Confidence 345679999999999999999999999998740 22333 45789999999999999999967999
Q ss_pred eecCceEEEecCCCCC
Q 016936 103 IFEGVAVRVRRPTDYN 118 (380)
Q Consensus 103 ~i~g~~i~v~~~~~~~ 118 (380)
.|.|++|+|.++....
T Consensus 80 ~~~gr~i~v~~a~~~~ 95 (114)
T 2cpy_A 80 KLNGREAFVHVVTLED 95 (114)
T ss_dssp EETTEEEEEEEECHHH
T ss_pred ccCCeEEEEEECCHHH
Confidence 9999999999876543
No 328
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=9.3e-14 Score=101.53 Aligned_cols=72 Identities=14% Similarity=0.146 Sum_probs=62.5
Q ss_pred ccce-EEEcCCCCcCcHHH----HHHHHHHHH-HhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCce
Q 016936 31 HARR-VYVGGLPPLANEQA----IATFFSQVM-TAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGII 103 (380)
Q Consensus 31 ~~~~-v~V~nLp~~~t~~~----l~~~f~~~G-~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~ 103 (380)
++.| |||+|||..+++++ |+++|++|| . |+++. .|+|||+|.+.++|++|+ .|+|..
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~------------Vl~Vt----gG~AfV~F~~~esA~~A~~~l~G~~ 70 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGK------------VLSIT----GCSAILRFINQDSAERAQKRMENED 70 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCC------------EEECC----TTCEEEEESSHHHHHHHHHHHTTCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCe------------eEEEe----cCEEEEEECCHHHHHHHHHHhcCCc
Confidence 4555 99999999999988 558999995 7 66662 399999999999999999 899999
Q ss_pred ecCceEEEecCCCCC
Q 016936 104 FEGVAVRVRRPTDYN 118 (380)
Q Consensus 104 i~g~~i~v~~~~~~~ 118 (380)
+.|++|+|.++....
T Consensus 71 l~gr~i~v~~A~~~s 85 (96)
T 2diu_A 71 VFGNRIIVSFTPKNR 85 (96)
T ss_dssp SSSSCCEEESSCCSC
T ss_pred cCCceEEEEecCCCc
Confidence 999999999987653
No 329
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.49 E-value=6.3e-14 Score=122.64 Aligned_cols=101 Identities=33% Similarity=0.504 Sum_probs=86.3
Q ss_pred CccceEEEEeccCCcccCCChHHHHHHHHHHHHhhcccCCeEEEEecCCCCCCCC-CCCccEEEEEeechhhHHHHHHHH
Q 016936 275 ETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGE-TPGVGKVFLEYYDAVGCATAKNAL 353 (380)
Q Consensus 275 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~f~~~G~I~~v~i~~~~~~~~~-~~g~g~afV~f~~~~~A~~A~~~l 353 (380)
.....++.+.+.++.+++.++.. ++|++.|++||.|.++.++++...+.. .++.|++||+|.+.++|.+|++.|
T Consensus 121 ~~~s~v~~l~n~v~~~e~~~e~~-----~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l 195 (222)
T 3dxb_A 121 AMESTVMVLRNMVDPKDIDDDLE-----GEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQAL 195 (222)
T ss_dssp CCBCSEEEEESSCCGGGCCTTHH-----HHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccccchhhcCCCHHHHHHHHH-----HHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHh
Confidence 45567889999998887765543 699999999999999999866544321 255688899999999999999999
Q ss_pred cCcccCCeEEEEEeccccccccccCCC
Q 016936 354 SGRKFGGNTVNAFYYPEDKYFNKDYSA 380 (380)
Q Consensus 354 ~g~~i~gr~l~v~~~~~~~~~~~~~~~ 380 (380)
||++|+||.|+++|++++.|+.++|++
T Consensus 196 ~gr~~~gr~i~~~~~~~~~f~~~~~~~ 222 (222)
T 3dxb_A 196 NGRWFAGRKVVAEVYDQERFDNSDLSA 222 (222)
T ss_dssp TTCBSSSSBCEEEECCHHHHHTTCCCC
T ss_pred cCceECCeEEEEEEcCHHHhhhcccCC
Confidence 999999999999999999999999986
No 330
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.48 E-value=8.4e-14 Score=112.63 Aligned_cols=76 Identities=25% Similarity=0.446 Sum_probs=67.6
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec------CCCcEEEEEeCCHHHHHHHH-Hc
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN------HEKKFAFVEMRTVEEASNAM-AL 99 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~------~~~g~afV~f~~~~~a~~ai-~l 99 (380)
....+.++|||+|||+.+++++|+++|++||. |..+.+. +++|||||+|.+.++|++|+ .+
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~------------i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 125 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGD------------ITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 125 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSC------------EEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHS
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCC------------EEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHh
Confidence 44567899999999999999999999999997 6667663 35899999999999999999 79
Q ss_pred CCceecCceEEEecC
Q 016936 100 DGIIFEGVAVRVRRP 114 (380)
Q Consensus 100 ~~~~i~g~~i~v~~~ 114 (380)
++..|.|++|+|.++
T Consensus 126 ~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 126 NESELFGRTIRVNLA 140 (140)
T ss_dssp TEEEETTEEEEEEC-
T ss_pred CCCEECCEEEEEEeC
Confidence 999999999999874
No 331
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=7.2e-14 Score=108.86 Aligned_cols=80 Identities=15% Similarity=0.307 Sum_probs=67.6
Q ss_pred chhhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec-----CCCcEEEEEeCCHHHHHHHH-H
Q 016936 25 TQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN-----HEKKFAFVEMRTVEEASNAM-A 98 (380)
Q Consensus 25 ~~~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~-----~~~g~afV~f~~~~~a~~ai-~ 98 (380)
....+.+.++|||+|||+.+++++|+++|++||. |..+.+. .++|||||+|.+.++|.+|+ .
T Consensus 18 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 85 (114)
T 1x5o_A 18 AKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQ------------VISTRILRDSSGTSRGVGFARMESTEKCEAVIGH 85 (114)
T ss_dssp CSCCCCCTTEEEEESCCTTCCHHHHHHTTTTTSC------------EEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHH
T ss_pred hcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------EEEEEEEECCCCCcceEEEEEECCHHHHHHHHHH
Confidence 3355678899999999999999999999999997 5555543 34799999999999999999 7
Q ss_pred cCCcee--------cCceEEEecCCC
Q 016936 99 LDGIIF--------EGVAVRVRRPTD 116 (380)
Q Consensus 99 l~~~~i--------~g~~i~v~~~~~ 116 (380)
+|+..| .+++|.|.++.+
T Consensus 86 l~g~~~~~~~~~~~~~~~l~v~~a~p 111 (114)
T 1x5o_A 86 FNGKFIKTPPGVSAPTEPLLCKFSGP 111 (114)
T ss_dssp HBTCCCCCCTTSCCCSSCBEEEECCC
T ss_pred hCCCEEcCCccccCCCCceeEEccCC
Confidence 999999 567899988653
No 332
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.48 E-value=1.6e-14 Score=107.49 Aligned_cols=72 Identities=36% Similarity=0.524 Sum_probs=62.4
Q ss_pred ceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEe------cCCCcEEEEEeCCHHHHHHHH-HcCCceec
Q 016936 33 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASNAM-ALDGIIFE 105 (380)
Q Consensus 33 ~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~------~~~~g~afV~f~~~~~a~~ai-~l~~~~i~ 105 (380)
++|||+|||.++++++|+++|++||. |.++.+ +.++|||||+|.+.+ |.+|+ .+++..+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~------------i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~ 68 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGK------------VFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFM 68 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTC------------CSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCS
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCC------------EEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEEC
Confidence 78999999999999999999999998 445554 345899999999999 99999 79999999
Q ss_pred CceEEEecCCCC
Q 016936 106 GVAVRVRRPTDY 117 (380)
Q Consensus 106 g~~i~v~~~~~~ 117 (380)
|++|+|.++...
T Consensus 69 g~~l~V~~a~~~ 80 (90)
T 2ki2_A 69 GRTIRVTEANPK 80 (90)
T ss_dssp SSSCSEEEC---
T ss_pred CeEEEEEEcCCC
Confidence 999999997654
No 333
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=4e-14 Score=104.91 Aligned_cols=78 Identities=19% Similarity=0.420 Sum_probs=66.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcc
Q 016936 151 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 230 (380)
Q Consensus 151 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~ 230 (380)
..++|||+|||..+++++|+++|++||.|..|+++.+ ++|||||+|.+.++|++|... ...+.|+.|.|.++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecC
Confidence 3479999999999999999999999999999999754 689999999999999865331 345699999999987
Q ss_pred cCCCC
Q 016936 231 ASSGQ 235 (380)
Q Consensus 231 ~~~~~ 235 (380)
++...
T Consensus 77 ~~~~~ 81 (88)
T 1wf0_A 77 PKHNS 81 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76443
No 334
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.47 E-value=1.7e-13 Score=116.98 Aligned_cols=78 Identities=22% Similarity=0.256 Sum_probs=72.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcccC
Q 016936 153 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 232 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~~~ 232 (380)
++|||+|||+.+++++|+++|++||.|..|++++++ +++++|||||+|.+.++|++|+..+ +..+.|+.|.|.++..-
T Consensus 110 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 110 RSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp TEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred CEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 699999999999999999999999999999999986 5999999999999999999999865 56999999999997653
No 335
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.6e-14 Score=110.18 Aligned_cols=80 Identities=20% Similarity=0.309 Sum_probs=67.2
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEE---ecCCCcEEEEEeCCHHHHHHHH-HcCCc
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY---INHEKKFAFVEMRTVEEASNAM-ALDGI 102 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~---~~~~~g~afV~f~~~~~a~~ai-~l~~~ 102 (380)
....+.++|||+|||.++++++|+++|++|+. +..+. ...++|||||+|.+.++|.+|+ .|++.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~------------~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 77 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSVR------------ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDG 77 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCSE------------EEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCeE------------EEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCC
Confidence 44567899999999999999999999997743 33333 2345799999999999999999 69999
Q ss_pred eecCceEEEecCCCCC
Q 016936 103 IFEGVAVRVRRPTDYN 118 (380)
Q Consensus 103 ~i~g~~i~v~~~~~~~ 118 (380)
.|.|++|+|.++..+.
T Consensus 78 ~~~g~~l~V~~a~~~~ 93 (102)
T 2fc8_A 78 EIDGNKVTLDWAKPKG 93 (102)
T ss_dssp EETTEECEEEECCCCC
T ss_pred eECCeEEEEEEecCCC
Confidence 9999999999976643
No 336
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.47 E-value=6.7e-14 Score=113.69 Aligned_cols=88 Identities=16% Similarity=0.176 Sum_probs=70.6
Q ss_pred hcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceecCc
Q 016936 29 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 107 (380)
Q Consensus 29 ~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~g~ 107 (380)
..+.++|||+|||+++|+++|+++|++||.|..... .....+.....++++|||||+|.+.++|.+|+ .+|+..|.|+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~-~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQ-RIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHH-HHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccc-cceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 467899999999999999999999999998642100 00000233456788999999999999999999 6999999999
Q ss_pred eEEEecCCCC
Q 016936 108 AVRVRRPTDY 117 (380)
Q Consensus 108 ~i~v~~~~~~ 117 (380)
+|+|.++...
T Consensus 121 ~l~V~~a~~~ 130 (143)
T 3egn_A 121 PMVVQFARSA 130 (143)
T ss_dssp ECEEEECCCS
T ss_pred EEEEEECCCC
Confidence 9999997654
No 337
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=1.6e-13 Score=103.32 Aligned_cols=77 Identities=19% Similarity=0.328 Sum_probs=67.1
Q ss_pred hcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEE-EecC--CCcEEEEEeCCHHHHHHHH-HcCCcee
Q 016936 29 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNV-YINH--EKKFAFVEMRTVEEASNAM-ALDGIIF 104 (380)
Q Consensus 29 ~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~-~~~~--~~g~afV~f~~~~~a~~ai-~l~~~~i 104 (380)
....++|||+|||+++++++|+++|++||. |..+ .+.. ..+.|||+|.+.++|.+|+ .+++..|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~ 79 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGV------------VESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQL 79 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSC------------EEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBC
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCC------------eEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 345789999999999999999999999997 6666 3443 3466999999999999999 7999999
Q ss_pred cCceEEEecCCCC
Q 016936 105 EGVAVRVRRPTDY 117 (380)
Q Consensus 105 ~g~~i~v~~~~~~ 117 (380)
.|++|+|.++.+.
T Consensus 80 ~g~~l~V~~a~~~ 92 (96)
T 2e44_A 80 ENFTLKVAYIPDE 92 (96)
T ss_dssp SSCBCEEEECCCC
T ss_pred CCcEEEEEEcCcc
Confidence 9999999997665
No 338
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.47 E-value=4.7e-14 Score=113.28 Aligned_cols=79 Identities=25% Similarity=0.403 Sum_probs=69.3
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEe------cCCCcEEEEEeCCHHHHHHHH-Hc
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASNAM-AL 99 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~------~~~~g~afV~f~~~~~a~~ai-~l 99 (380)
....+.++|||+|||+++++++|+++|++||. |..+.+ .+++|||||+|.+.++|++|+ .+
T Consensus 42 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~------------i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l 109 (135)
T 2lea_A 42 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGR------------VGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 109 (135)
T ss_dssp SSGGGCCCEEEECCCSSCHHHHHHHHHGGGSC------------CSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------EEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHc
Confidence 45567899999999999999999999999997 455554 345789999999999999999 79
Q ss_pred CCceecCceEEEecCCCC
Q 016936 100 DGIIFEGVAVRVRRPTDY 117 (380)
Q Consensus 100 ~~~~i~g~~i~v~~~~~~ 117 (380)
++..|.|++|+|.++...
T Consensus 110 ~g~~i~g~~l~V~~a~~~ 127 (135)
T 2lea_A 110 DGAVLDGRELRVQMARYG 127 (135)
T ss_dssp TTCCSSSSCCEEEECCCC
T ss_pred CCCEECCEEEEEEECCCC
Confidence 999999999999997654
No 339
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.46 E-value=2.1e-13 Score=107.21 Aligned_cols=76 Identities=22% Similarity=0.357 Sum_probs=68.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEc
Q 016936 150 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 229 (380)
Q Consensus 150 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~ 229 (380)
...++|||+|+ ++++++|+++|++||.|..|.+. .++|||||+|.+.++|++|+..|++..+.|+.|.|.++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 34579999996 69999999999999999999985 45789999999999999999999999999999999999
Q ss_pred ccCC
Q 016936 230 TASS 233 (380)
Q Consensus 230 ~~~~ 233 (380)
.+..
T Consensus 109 ~~~~ 112 (121)
T 2bz2_A 109 RKQP 112 (121)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 7654
No 340
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.46 E-value=6.6e-14 Score=111.94 Aligned_cols=88 Identities=15% Similarity=0.269 Sum_probs=70.2
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCc---
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGI--- 102 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~--- 102 (380)
......++|||+|||+++|+++|+++|++||.|...+ ..++.+...++++|||||+|.+. +|.+|+ .+++.
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~----v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~ 92 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSN----VRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPP 92 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTT----EECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceee----EEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCC
Confidence 4557789999999999999999999999999853210 01122222456789999999999 999999 89999
Q ss_pred -eecCceEEEecCCCCCc
Q 016936 103 -IFEGVAVRVRRPTDYNP 119 (380)
Q Consensus 103 -~i~g~~i~v~~~~~~~~ 119 (380)
.+.|++|+|.++.....
T Consensus 93 ~~~~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 93 LTIDGKTINVEFAKGSKR 110 (131)
T ss_dssp CCGGGCCCCCEECCCSCC
T ss_pred ccCCCEEEEEEECCCCCC
Confidence 99999999999876543
No 341
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.46 E-value=2.3e-13 Score=111.26 Aligned_cols=77 Identities=18% Similarity=0.160 Sum_probs=66.4
Q ss_pred cccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec--CCCcEEEEEeCCHHHHHHHH-HcCCceecC
Q 016936 30 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN--HEKKFAFVEMRTVEEASNAM-ALDGIIFEG 106 (380)
Q Consensus 30 ~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~--~~~g~afV~f~~~~~a~~ai-~l~~~~i~g 106 (380)
....+|||+||++.+|+++|+++|++||. |.++.+. ..+|||||+|.+.++|++|+ .|+|..|.|
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~------------V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g 111 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGT------------VLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN 111 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSC------------EEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSS
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCC------------EEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecC
Confidence 44567999999999999999999999998 5555553 34689999999999999999 799999966
Q ss_pred --ceEEEecCCCCC
Q 016936 107 --VAVRVRRPTDYN 118 (380)
Q Consensus 107 --~~i~v~~~~~~~ 118 (380)
++|+|.|+....
T Consensus 112 ~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 112 ACCTLRIDFSKLTS 125 (164)
T ss_dssp SCSCEEEEECSSSS
T ss_pred CCcEEEEEEecCCc
Confidence 999999987653
No 342
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=2.3e-14 Score=109.28 Aligned_cols=79 Identities=28% Similarity=0.176 Sum_probs=65.2
Q ss_pred hcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEE--ecCCCcEEEEEeCCHHHHHHHHHcCCceecC
Q 016936 29 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY--INHEKKFAFVEMRTVEEASNAMALDGIIFEG 106 (380)
Q Consensus 29 ~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~--~~~~~g~afV~f~~~~~a~~ai~l~~~~i~g 106 (380)
....++|||+|||+++|++||+++|++||.+ . |..+. ..+++|||||+|.+.++|++||++++..|.|
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~---------v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~g 81 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-R---------VHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQH 81 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-E---------EEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-E---------EEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECC
Confidence 4557899999999999999999999999842 1 22222 2355799999999999999999889999999
Q ss_pred ceEEEecCCCC
Q 016936 107 VAVRVRRPTDY 117 (380)
Q Consensus 107 ~~i~v~~~~~~ 117 (380)
+.|+|.++...
T Consensus 82 r~i~V~~~~~~ 92 (102)
T 1wez_A 82 RYVELFLNSTA 92 (102)
T ss_dssp SCCEEEEECCC
T ss_pred cEEEEEECCCC
Confidence 99999876543
No 343
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=2.8e-14 Score=102.83 Aligned_cols=72 Identities=11% Similarity=0.268 Sum_probs=60.1
Q ss_pred ceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEE---ecCCCcEEEEEeCCHHHHHHHH-HcCCceecCce
Q 016936 33 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY---INHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 108 (380)
Q Consensus 33 ~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~---~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~g~~ 108 (380)
++|||+|||+++++++|+++|++||.|.. +.... .+.++|||||+|.+.++|.+|+ .++ ..+.|++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~---------v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~ 70 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKE---------CLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKT 70 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCC---------EEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEE---------EEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEE
Confidence 58999999999999999999999998432 22111 2345799999999999999999 566 8999999
Q ss_pred EEEecC
Q 016936 109 VRVRRP 114 (380)
Q Consensus 109 i~v~~~ 114 (380)
|+|.++
T Consensus 71 l~v~~a 76 (77)
T 1uaw_A 71 IDPKVA 76 (77)
T ss_dssp CEEEEC
T ss_pred EEEEec
Confidence 999875
No 344
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.45 E-value=1.4e-13 Score=102.12 Aligned_cols=78 Identities=24% Similarity=0.419 Sum_probs=59.8
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecC-CCcEEEEEeCCHHHHHHHHHcCCceec
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH-EKKFAFVEMRTVEEASNAMALDGIIFE 105 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~-~~g~afV~f~~~~~a~~ai~l~~~~i~ 105 (380)
.+..+.++|||+|||+++|+++|+++|++||. |.++.+.. ++|||||+|.+.++|.++... ...+.
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~------------i~~v~i~~~srGfaFV~F~~~~~A~~~~~~-~~~~~ 72 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGE------------VVDVFIPKPFRAFAFVTFADDKVAQSLCGE-DLIIK 72 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSC------------EEEEECCSSCCSEEEEEESCHHHHHHHTTC-EEEET
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCC------------EEEEEEeeCCCCEEEEEECCHHHHHHHcCC-CcccC
Confidence 45678899999999999999999999999998 77777654 689999999999999853221 33456
Q ss_pred CceEEEecCCCC
Q 016936 106 GVAVRVRRPTDY 117 (380)
Q Consensus 106 g~~i~v~~~~~~ 117 (380)
|++|.|.++..+
T Consensus 73 g~~v~v~~a~~k 84 (89)
T 3d2w_A 73 GISVHISNAEPK 84 (89)
T ss_dssp TEEEEEEECC--
T ss_pred CEEEEEEEcCCC
Confidence 899999987654
No 345
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.45 E-value=1.2e-13 Score=107.83 Aligned_cols=74 Identities=26% Similarity=0.353 Sum_probs=63.8
Q ss_pred cccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceecCce
Q 016936 30 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 108 (380)
Q Consensus 30 ~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~g~~ 108 (380)
...++|||+|||+++++++|+++|++||. |..+.+..+ |||||+|.+.++|++|| .||+..|.|++
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~------------v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGD------------VCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSC------------EEEEEECTT-SEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEecC-CEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 46799999999999999999999999987 778887766 99999999999999999 69999999988
Q ss_pred -----EEEecCCC
Q 016936 109 -----VRVRRPTD 116 (380)
Q Consensus 109 -----i~v~~~~~ 116 (380)
|+|..+..
T Consensus 81 ~~~~~i~v~~~~~ 93 (115)
T 3beg_B 81 GETAYIRVKVDGP 93 (115)
T ss_dssp SCCCBCEEEECC-
T ss_pred eeeEEEEeccCCC
Confidence 77765443
No 346
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.44 E-value=1.4e-14 Score=111.66 Aligned_cols=81 Identities=16% Similarity=0.217 Sum_probs=67.3
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEe-----cCCCcEEEEEeCCHHHHHHHHHcCC
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI-----NHEKKFAFVEMRTVEEASNAMALDG 101 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~-----~~~~g~afV~f~~~~~a~~ai~l~~ 101 (380)
......++|||+|||+++|+++|+++|++||.+-+ |..+.+ ++++|||||+|.+.++|.+|+.+++
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~---------v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~ 76 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNG---------ENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHR 76 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTT---------TTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTT
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCC---------cceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCc
Confidence 34567899999999999999999999999887210 222222 4578999999999999999999999
Q ss_pred ceecCceEEEecCCC
Q 016936 102 IIFEGVAVRVRRPTD 116 (380)
Q Consensus 102 ~~i~g~~i~v~~~~~ 116 (380)
..+.|+.|+|.++..
T Consensus 77 ~~~~gr~i~V~~a~~ 91 (107)
T 2lmi_A 77 MYMGQRYVEVYEINN 91 (107)
T ss_dssp CCSSSSCCCCEECCH
T ss_pred ceeCCeEEEEEECCH
Confidence 999999999998654
No 347
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1e-12 Score=101.94 Aligned_cols=81 Identities=17% Similarity=0.299 Sum_probs=69.2
Q ss_pred CCCCCEEEEcCCCCCCC-----------HHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCC
Q 016936 149 AEGPDRVFVGGLPYYFT-----------ETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGL 217 (380)
Q Consensus 149 ~~~~~~l~V~nlp~~~t-----------~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~ 217 (380)
....++|+|.||..... +++|+++|++||.|..|.+ .++ .++|||||+|.+.++|++|+..|||.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 34558999999944432 5799999999999999966 442 37999999999999999999999999
Q ss_pred eeCCeEEEEEEcccCC
Q 016936 218 KMGDKTLTVRRATASS 233 (380)
Q Consensus 218 ~~~g~~i~v~~~~~~~ 233 (380)
.+.|+.|.|.++.++.
T Consensus 88 ~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 88 WFGGRQITAQAWDGTT 103 (112)
T ss_dssp EETTEECEEEECCSCC
T ss_pred EECCcEEEEEEeCCCC
Confidence 9999999999987754
No 348
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=3.4e-14 Score=111.69 Aligned_cols=84 Identities=24% Similarity=0.266 Sum_probs=66.6
Q ss_pred hhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEE--ecCCCcEEEEEeCCHHHHHHHHHcCCceec
Q 016936 28 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY--INHEKKFAFVEMRTVEEASNAMALDGIIFE 105 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~--~~~~~g~afV~f~~~~~a~~ai~l~~~~i~ 105 (380)
...+.++|||+|||+++|++||+++|++||.|.+. ...|..+. .++++|||||+|.+.++|++|+..++..|.
T Consensus 19 ~~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~-----v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~ 93 (123)
T 2dha_A 19 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGG-----KEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLG 93 (123)
T ss_dssp HCCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTG-----GGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCC-----cceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeC
Confidence 35678999999999999999999999999864210 00133222 345679999999999999999977999999
Q ss_pred CceEEEecCCC
Q 016936 106 GVAVRVRRPTD 116 (380)
Q Consensus 106 g~~i~v~~~~~ 116 (380)
|+.|.|..+..
T Consensus 94 gR~i~V~~a~~ 104 (123)
T 2dha_A 94 KRYIELFRSTA 104 (123)
T ss_dssp SCEECCEEECH
T ss_pred CeEEEEEECCH
Confidence 99999987643
No 349
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.43 E-value=3.9e-13 Score=102.75 Aligned_cols=81 Identities=11% Similarity=0.205 Sum_probs=70.2
Q ss_pred CCCEEEEcCC--CCCCC--------HHHHHHHHHhcCCeeEEEEeeCCCC--CCCceEEEEEEcChhHHHHHHHHhCCCe
Q 016936 151 GPDRVFVGGL--PYYFT--------ETQIKELLESFGTLHGFDLVKDRDT--GNSKGYGFCVYQDPAVTDIACAALNGLK 218 (380)
Q Consensus 151 ~~~~l~V~nl--p~~~t--------~~~l~~~F~~~G~i~~v~l~~~~~~--~~~~g~afV~f~~~~~A~~Ai~~l~g~~ 218 (380)
.++.|.|.|+ |..+. +++|++.|++||.|.+|.+++++.+ ++++|+|||+|.+.++|.+|+..|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 3478999998 44443 3689999999999999999988653 3689999999999999999999999999
Q ss_pred eCCeEEEEEEccc
Q 016936 219 MGDKTLTVRRATA 231 (380)
Q Consensus 219 ~~g~~i~v~~~~~ 231 (380)
+.||.|+|.++..
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999999753
No 350
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.43 E-value=1.2e-13 Score=108.55 Aligned_cols=76 Identities=24% Similarity=0.364 Sum_probs=68.3
Q ss_pred hhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceecC
Q 016936 28 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 106 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~g 106 (380)
.....++|||+|| ++++++|+++|++||. |.++.+..++|||||+|.+.++|.+|+ .+++..+.|
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~------------I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g 100 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGN------------IIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVES 100 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCC------------CSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSS
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCC------------EEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 4467899999996 7999999999999998 566677789999999999999999999 899999999
Q ss_pred ceEEEecCCCC
Q 016936 107 VAVRVRRPTDY 117 (380)
Q Consensus 107 ~~i~v~~~~~~ 117 (380)
++|+|.++...
T Consensus 101 ~~l~V~~a~~~ 111 (121)
T 2bz2_A 101 VQLKVNIARKQ 111 (121)
T ss_dssp CBCEEEECCSS
T ss_pred eEEEEEEeCCC
Confidence 99999997654
No 351
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.43 E-value=5.9e-13 Score=104.38 Aligned_cols=74 Identities=18% Similarity=0.125 Sum_probs=63.5
Q ss_pred ceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcE-EEEEeCCHHHHHHHH-HcCCceecC--ce
Q 016936 33 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKF-AFVEMRTVEEASNAM-ALDGIIFEG--VA 108 (380)
Q Consensus 33 ~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~-afV~f~~~~~a~~ai-~l~~~~i~g--~~ 108 (380)
..|||+|||+.+++++|+++|++||. |.++.+....|+ |||+|.+.++|..|+ .|+|..|.| ++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~------------V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~ 93 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGK------------VQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCT 93 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSC------------EEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSE
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCC------------EEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeE
Confidence 44789999999999999999999998 555555444586 999999999999999 799999987 68
Q ss_pred EEEecCCCCC
Q 016936 109 VRVRRPTDYN 118 (380)
Q Consensus 109 i~v~~~~~~~ 118 (380)
|+|.++....
T Consensus 94 l~V~~Ak~~~ 103 (124)
T 2e5i_A 94 LKIEYARPTR 103 (124)
T ss_dssp EEEECCSCSC
T ss_pred EEEEEecCCc
Confidence 9999876653
No 352
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.43 E-value=1.9e-13 Score=113.80 Aligned_cols=78 Identities=24% Similarity=0.264 Sum_probs=67.8
Q ss_pred hhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecC------CCcEEEEEeCCHHHHHHHH-HcC
Q 016936 28 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH------EKKFAFVEMRTVEEASNAM-ALD 100 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~------~~g~afV~f~~~~~a~~ai-~l~ 100 (380)
...+.++|||+|||+.+++++|+++|++||. |..+.+.. ++|||||+|.+.++|.+|| .||
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~------------i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 135 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGE------------IKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALN 135 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSC------------EEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCC------------EEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhC
Confidence 3466789999999999999999999999998 56666543 4799999999999999999 799
Q ss_pred CceecCceEEEecCCCC
Q 016936 101 GIIFEGVAVRVRRPTDY 117 (380)
Q Consensus 101 ~~~i~g~~i~v~~~~~~ 117 (380)
+..|.|++|.|.|+...
T Consensus 136 g~~~~g~~l~V~~a~~~ 152 (165)
T 1rk8_A 136 GAEIMGQTIQVDWCFVK 152 (165)
T ss_dssp TCEETTEECEEEESEEC
T ss_pred CCEECCEEEEEEEecCC
Confidence 99999999999997543
No 353
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.42 E-value=2.1e-13 Score=116.36 Aligned_cols=90 Identities=22% Similarity=0.340 Sum_probs=73.0
Q ss_pred CCCCccccch--hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec-----CCCcEEEEEeCC
Q 016936 17 PLMPVQVMTQ--QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN-----HEKKFAFVEMRT 89 (380)
Q Consensus 17 ~~~~~~~~~~--~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~-----~~~g~afV~f~~ 89 (380)
|..|.+...+ ..+...++|||+|||+++++++|+++|++||. |..+.+. .++|||||+|.+
T Consensus 92 ~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~------------v~~v~i~~~~~~~~kG~aFVeF~~ 159 (193)
T 2voo_A 92 PSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQ------------VLNIQMRRTLHKAFKGSIFVVFDS 159 (193)
T ss_dssp TTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCC------------EEEEEEEECTTCCEEEEEEEEESS
T ss_pred ccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCC------------EEEEEEEECCCCCcccEEEEEECC
Confidence 4444444432 25667899999999999999999999999998 5555543 357999999999
Q ss_pred HHHHHHHHHcCCceecCceEEEecCCCCC
Q 016936 90 VEEASNAMALDGIIFEGVAVRVRRPTDYN 118 (380)
Q Consensus 90 ~~~a~~ai~l~~~~i~g~~i~v~~~~~~~ 118 (380)
.++|.+|+...+..+.|++|.|.|..++.
T Consensus 160 ~e~A~~A~~~~~~~~~Gr~l~V~~~~~y~ 188 (193)
T 2voo_A 160 IESAKKFVETPGQKYKETDLLILFKDDYF 188 (193)
T ss_dssp HHHHHHHHHCTTCEETTEECEEEETTTC-
T ss_pred HHHHHHHHHhCCCeECCEEEEEEEhHHHH
Confidence 99999999766779999999999987764
No 354
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.42 E-value=3.9e-13 Score=105.86 Aligned_cols=77 Identities=19% Similarity=0.216 Sum_probs=65.7
Q ss_pred cccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec-CCCcE-EEEEeCCHHHHHHHH-HcCCceecC
Q 016936 30 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN-HEKKF-AFVEMRTVEEASNAM-ALDGIIFEG 106 (380)
Q Consensus 30 ~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~-~~~g~-afV~f~~~~~a~~ai-~l~~~~i~g 106 (380)
..--+|||+||++.+|+++|+++|++||. |.++.+. +.+|+ |||+|.+.++|.+|+ .|+|..|.|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~------------V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g 93 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGT------------VLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN 93 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSC------------EEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEET
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCC------------EEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecC
Confidence 34456889999999999999999999998 5555543 45677 999999999999999 899999998
Q ss_pred --ceEEEecCCCCC
Q 016936 107 --VAVRVRRPTDYN 118 (380)
Q Consensus 107 --~~i~v~~~~~~~ 118 (380)
+.|+|.++...+
T Consensus 94 ~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 94 ACCTLRIDFSKLTS 107 (130)
T ss_dssp TEEEEEEEECSCSS
T ss_pred CCcEEEEEecCCCc
Confidence 899999987654
No 355
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=1.4e-13 Score=101.94 Aligned_cols=76 Identities=25% Similarity=0.384 Sum_probs=63.4
Q ss_pred cccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec-CCCcEEEEEeCCHHHHHHHHHcCCceecCce
Q 016936 30 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN-HEKKFAFVEMRTVEEASNAMALDGIIFEGVA 108 (380)
Q Consensus 30 ~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~-~~~g~afV~f~~~~~a~~ai~l~~~~i~g~~ 108 (380)
.++++|||+|||.++++++|+++|++||. |.++.+. .++|||||+|.+.++|++|+.. ...+.|++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~------------i~~v~i~~~~~g~afV~f~~~~~a~~~~~~-~~~~~g~~ 69 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGD------------VMDVFIPKPFRAFAFVTFADDQIAQSLCGE-DLIIKGIS 69 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSC------------CCEEECCSSCCSCCEEECSCHHHHHHTTTC-EEEETTEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCC------------eeEEEEecCCCCEEEEEECCHHHHHHHhcC-CceeCCEE
Confidence 46799999999999999999999999997 6667664 3689999999999999875532 35568999
Q ss_pred EEEecCCCCC
Q 016936 109 VRVRRPTDYN 118 (380)
Q Consensus 109 i~v~~~~~~~ 118 (380)
|+|.++..+.
T Consensus 70 l~v~~a~~~~ 79 (88)
T 1wf0_A 70 VHISNAEPKH 79 (88)
T ss_dssp EEEECCCCCC
T ss_pred EEEEecCCCC
Confidence 9999876653
No 356
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.13 E-value=1.5e-14 Score=113.18 Aligned_cols=91 Identities=21% Similarity=0.234 Sum_probs=70.2
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCC--CCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCce
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAG--PGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGII 103 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~--~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~ 103 (380)
+...+.++|||+|||.++++++|+++|++||.|......+ ....+.+.....++|||||+|.+.++|.+|+ .|++..
T Consensus 2 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 81 (116)
T 2lcw_A 2 QDNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 81 (116)
Confidence 4567789999999999999999999999999864300000 0011122233456899999999999999999 699999
Q ss_pred ecCceEEEecCCCC
Q 016936 104 FEGVAVRVRRPTDY 117 (380)
Q Consensus 104 i~g~~i~v~~~~~~ 117 (380)
|.|++|+|.++...
T Consensus 82 ~~g~~l~V~~a~~~ 95 (116)
T 2lcw_A 82 FSGNPIKVSFATRR 95 (116)
Confidence 99999999997654
No 357
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.41 E-value=1.4e-13 Score=108.48 Aligned_cols=75 Identities=21% Similarity=0.251 Sum_probs=64.5
Q ss_pred hhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeE--EEEec-----CCCcEEEEEeCCHHHHHHHHHcC
Q 016936 28 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV--NVYIN-----HEKKFAFVEMRTVEEASNAMALD 100 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~--~~~~~-----~~~g~afV~f~~~~~a~~ai~l~ 100 (380)
.....++|||+|||+++|+++|+++|++|+ |+ ++.+. +++|||||+|.+.++|++|+.++
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~~-------------i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~ 104 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGLE-------------IVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 104 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTSC-------------EEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcCC-------------ceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHC
Confidence 445678999999999999999999999993 33 55553 46899999999999999999778
Q ss_pred CceecCceEEEecCC
Q 016936 101 GIIFEGVAVRVRRPT 115 (380)
Q Consensus 101 ~~~i~g~~i~v~~~~ 115 (380)
+..|.|+.|+|.++.
T Consensus 105 ~~~l~gR~I~V~~a~ 119 (126)
T 2hgm_A 105 KERIGHRYIEVFKSS 119 (126)
T ss_dssp TCCBTTBCCCCEEEC
T ss_pred CCEECCEEEEEEECC
Confidence 899999999998754
No 358
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.41 E-value=6.4e-14 Score=106.85 Aligned_cols=77 Identities=22% Similarity=0.348 Sum_probs=66.8
Q ss_pred hhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec-----CCCcEEEEEeCCHHHHHHHHHcCCc
Q 016936 28 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN-----HEKKFAFVEMRTVEEASNAMALDGI 102 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~-----~~~g~afV~f~~~~~a~~ai~l~~~ 102 (380)
.+..+++|||+|||+++++++|+++|++||. |..+.+. .++|||||+|.+.++|.+|+. ++.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~------------i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~ 71 (102)
T 2xs2_A 5 GKIMPNTVFVGGIDVRMDETEIRSFFARYGS------------VKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQI 71 (102)
T ss_dssp CEEEEEEEEEECCCTTCCHHHHHHHHGGGSC------------EEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCC------------eEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCC
Confidence 4556799999999999999999999999998 5555543 357999999999999999999 999
Q ss_pred eecCceEEEecCCCC
Q 016936 103 IFEGVAVRVRRPTDY 117 (380)
Q Consensus 103 ~i~g~~i~v~~~~~~ 117 (380)
.+.|++|.|.++..+
T Consensus 72 ~~~g~~l~v~~a~~~ 86 (102)
T 2xs2_A 72 NFHGKKLKLGPAIRK 86 (102)
T ss_dssp EETTEECEEEEEEEC
T ss_pred eECCEEEEEEECCcC
Confidence 999999999886543
No 359
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.41 E-value=3.7e-13 Score=117.55 Aligned_cols=77 Identities=21% Similarity=0.389 Sum_probs=69.6
Q ss_pred CCCCEEEEcCCCCCC---------CHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCee-
Q 016936 150 EGPDRVFVGGLPYYF---------TETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKM- 219 (380)
Q Consensus 150 ~~~~~l~V~nlp~~~---------t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~- 219 (380)
...++|||+|||..+ ++++|+++|++||.|..|+++.+ +|||||+|.+.++|+.|++.|+|..+
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 345799999999998 79999999999999999999853 68999999999999999999999999
Q ss_pred -----------CCeEEEEEEcccC
Q 016936 220 -----------GDKTLTVRRATAS 232 (380)
Q Consensus 220 -----------~g~~i~v~~~~~~ 232 (380)
.|+.|.|.|+...
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC--
T ss_pred ccccccccccCCCCEEEEEEccCC
Confidence 8999999999764
No 360
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.40 E-value=4e-13 Score=112.93 Aligned_cols=76 Identities=16% Similarity=0.227 Sum_probs=67.4
Q ss_pred hcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEe-----cCCCcEEEEEeCCHHHHHHHH-HcCCc
Q 016936 29 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI-----NHEKKFAFVEMRTVEEASNAM-ALDGI 102 (380)
Q Consensus 29 ~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~-----~~~~g~afV~f~~~~~a~~ai-~l~~~ 102 (380)
....++|||+|||+.+++++|+++|++||. |..+.+ ..++|||||+|.+.++|.+|+ .+++.
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~------------I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~ 152 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGT------------LKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGV 152 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSC------------CSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCC
Confidence 456789999999999999999999999998 555555 346799999999999999999 69999
Q ss_pred eecCceEEEecCCC
Q 016936 103 IFEGVAVRVRRPTD 116 (380)
Q Consensus 103 ~i~g~~i~v~~~~~ 116 (380)
.|.|++|+|.++..
T Consensus 153 ~l~Gr~l~V~~a~~ 166 (177)
T 2f3j_A 153 PLDGRPMDIQLVAS 166 (177)
T ss_dssp BCSSSBCEEEEESS
T ss_pred EECCEEEEEEEecC
Confidence 99999999998754
No 361
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.40 E-value=7.8e-13 Score=103.03 Aligned_cols=79 Identities=15% Similarity=0.189 Sum_probs=69.1
Q ss_pred CCEEEEcCC--CCCC---CHHHHHHHHHhcCCeeEEEEeeCCC----CCCCceEEEEEEcChhHHHHHHHHhCCCeeCCe
Q 016936 152 PDRVFVGGL--PYYF---TETQIKELLESFGTLHGFDLVKDRD----TGNSKGYGFCVYQDPAVTDIACAALNGLKMGDK 222 (380)
Q Consensus 152 ~~~l~V~nl--p~~~---t~~~l~~~F~~~G~i~~v~l~~~~~----~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 222 (380)
++.|+|.|+ |.++ .+++|++.|++||.|.+|.+++++. +++++|++||+|.+.++|.+|+..|||+.+.||
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR 99 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 99 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 369999999 3222 3689999999999999999998753 356789999999999999999999999999999
Q ss_pred EEEEEEcc
Q 016936 223 TLTVRRAT 230 (380)
Q Consensus 223 ~i~v~~~~ 230 (380)
.|+|.++.
T Consensus 100 ~i~v~~~~ 107 (118)
T 3ue2_A 100 KVVAEVYD 107 (118)
T ss_dssp ECEEEEEC
T ss_pred EEEEEEcC
Confidence 99999974
No 362
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.39 E-value=3e-13 Score=118.57 Aligned_cols=76 Identities=14% Similarity=0.217 Sum_probs=64.8
Q ss_pred cccceEEEcCCCCcCcHHHHHHHHHHHH--HhccCCCCCCCCeeEEEEe------cCCCcEEEEEeCCHHHHHHHH-HcC
Q 016936 30 RHARRVYVGGLPPLANEQAIATFFSQVM--TAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASNAM-ALD 100 (380)
Q Consensus 30 ~~~~~v~V~nLp~~~t~~~l~~~f~~~G--~i~~~~~~~~~~~i~~~~~------~~~~g~afV~f~~~~~a~~ai-~l~ 100 (380)
...++|||+|||+++|+++|+++|++|| . |.++.+ .+++|||||+|.+.++|.+|| .||
T Consensus 66 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~~~------------v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~ln 133 (229)
T 3q2s_C 66 GKRIALYIGNLTWWTTDEDLTEAVHSLGVND------------ILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLP 133 (229)
T ss_dssp ---CEEEEESCCTTCCHHHHHHHHHTTTCCC------------EEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTST
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHHCCcc------------eEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC
Confidence 3678999999999999999999999999 6 555554 345799999999999999999 699
Q ss_pred CceecCceEEEecCCCC
Q 016936 101 GIIFEGVAVRVRRPTDY 117 (380)
Q Consensus 101 ~~~i~g~~i~v~~~~~~ 117 (380)
+..|.|++|+|.++...
T Consensus 134 g~~~~Gr~l~V~~a~~~ 150 (229)
T 3q2s_C 134 KRELHGQNPVVTPVNKQ 150 (229)
T ss_dssp TSCBTTBCCEEEECCHH
T ss_pred CCeECCEEeEEEECCCC
Confidence 99999999999987643
No 363
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.39 E-value=3.7e-13 Score=117.54 Aligned_cols=78 Identities=22% Similarity=0.327 Sum_probs=70.5
Q ss_pred hhcccceEEEcCCCCcC---------cHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-
Q 016936 28 ATRHARRVYVGGLPPLA---------NEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM- 97 (380)
Q Consensus 28 ~~~~~~~v~V~nLp~~~---------t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai- 97 (380)
.....++|||+|||..+ ++++|+++|++||. |.++.+..++|||||+|.+.++|+.|+
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~------------I~~v~v~~~kG~AFV~F~~~~~Ae~A~~ 197 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGD------------IDRIRYVESKNCGFVKFKYQANAEFAKE 197 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSC------------EEEEEEEGGGTEEEEEESSHHHHHHHHH
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCC------------EEEEEEECCCCEEEEEeCCHHHHHHHHH
Confidence 35678999999999998 89999999999998 888888889999999999999999999
Q ss_pred HcCCcee------------cCceEEEecCCCC
Q 016936 98 ALDGIIF------------EGVAVRVRRPTDY 117 (380)
Q Consensus 98 ~l~~~~i------------~g~~i~v~~~~~~ 117 (380)
+|++..| .|+.|.|.|+...
T Consensus 198 am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 198 AMSNQTLLLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp HHTTCCCCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred HhCCCEEeccccccccccCCCCEEEEEEccCC
Confidence 8999999 8999999998754
No 364
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.38 E-value=9.6e-14 Score=111.51 Aligned_cols=78 Identities=29% Similarity=0.250 Sum_probs=64.7
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEe-----cCCCcEEEEEeCCHHHHHHHHHcCC
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI-----NHEKKFAFVEMRTVEEASNAMALDG 101 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~-----~~~~g~afV~f~~~~~a~~ai~l~~ 101 (380)
......++|||+|||+++|++||+++|++|| + + ++.+ .+++|||||+|.+.++|++||.+++
T Consensus 41 ~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i-----------~-~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g 107 (139)
T 2hgn_A 41 VQSTTGHCVHMRGLPYKATENDIYNFFSPLN-P-----------V-RVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDR 107 (139)
T ss_dssp ----CCCCEECCSCCTTCCHHHHHHHHCSCC-C-----------S-EEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-C-----------e-EEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCC
Confidence 3456789999999999999999999999998 3 2 3333 4568999999999999999999999
Q ss_pred ceecCceEEEecCCCC
Q 016936 102 IIFEGVAVRVRRPTDY 117 (380)
Q Consensus 102 ~~i~g~~i~v~~~~~~ 117 (380)
..|.|+.|+|.++...
T Consensus 108 ~~l~gR~i~V~~a~~~ 123 (139)
T 2hgn_A 108 ANMQHRYIELFLNSTT 123 (139)
T ss_dssp CSSSSCCCCCEECCCS
T ss_pred CEECCEEEEEEECCCC
Confidence 9999999999876543
No 365
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=9.1e-13 Score=102.56 Aligned_cols=69 Identities=26% Similarity=0.330 Sum_probs=54.7
Q ss_pred hcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEe---------cCCCcEEEEEeCCHHHHHHHH-H
Q 016936 29 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI---------NHEKKFAFVEMRTVEEASNAM-A 98 (380)
Q Consensus 29 ~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~---------~~~~g~afV~f~~~~~a~~ai-~ 98 (380)
....++|||+|||+++++++|+++|++||.| . +.+ ++++|||||+|.+.++|++|+ .
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i------------~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~ 71 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPL------------V-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDA 71 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCC------------C-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHH
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCE------------E-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHh
Confidence 4567999999999999999999999999974 3 332 356899999999999999999 6
Q ss_pred cCCceecCceEEEe
Q 016936 99 LDGIIFEGVAVRVR 112 (380)
Q Consensus 99 l~~~~i~g~~i~v~ 112 (380)
++ .+.|+.+.+.
T Consensus 72 ~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 72 CL--EEDGKLYLCV 83 (114)
T ss_dssp SE--EETTEEEEEE
T ss_pred hh--hcCCcEEEec
Confidence 62 2444444443
No 366
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.37 E-value=3.2e-13 Score=103.08 Aligned_cols=72 Identities=13% Similarity=0.259 Sum_probs=62.4
Q ss_pred EcCCCCCCCHHHHHHHH------------HhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEE
Q 016936 157 VGGLPYYFTETQIKELL------------ESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTL 224 (380)
Q Consensus 157 V~nlp~~~t~~~l~~~F------------~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i 224 (380)
+.+||+.+++++|+++| ++||.|.+|.+++++ .++++|||||+|.+.++|.+|+..|||..+.|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 44566666776666655 999999999999886 48899999999999999999999999999999999
Q ss_pred EEEEc
Q 016936 225 TVRRA 229 (380)
Q Consensus 225 ~v~~~ 229 (380)
+|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 367
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.31 E-value=4.2e-12 Score=121.66 Aligned_cols=76 Identities=16% Similarity=0.208 Sum_probs=66.8
Q ss_pred cccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEe------cCCCcEEEEEeCCHHHHHHHH-HcCCc
Q 016936 30 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASNAM-ALDGI 102 (380)
Q Consensus 30 ~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~------~~~~g~afV~f~~~~~a~~ai-~l~~~ 102 (380)
.+.++|||+|||+.+|+++|.++|++||.| ..+.+ +.++|||||+|.+.++|.+|| .||+.
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I------------~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~ 167 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPI------------KRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGK 167 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCe------------eEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCC
Confidence 345899999999999999999999999984 44443 446899999999999999999 89999
Q ss_pred eecCceEEEecCCCC
Q 016936 103 IFEGVAVRVRRPTDY 117 (380)
Q Consensus 103 ~i~g~~i~v~~~~~~ 117 (380)
.|.|++|.|.++...
T Consensus 168 ~i~gr~i~V~~a~~~ 182 (437)
T 3pgw_S 168 KIDGRRVLVDVERGR 182 (437)
T ss_pred EECCEEEEEEEeCCC
Confidence 999999999997654
No 368
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=5.7e-11 Score=89.49 Aligned_cols=76 Identities=11% Similarity=0.166 Sum_probs=63.6
Q ss_pred CCEEEEcCCC-------CCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEE
Q 016936 152 PDRVFVGGLP-------YYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTL 224 (380)
Q Consensus 152 ~~~l~V~nlp-------~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i 224 (380)
.++|.|.-.+ ..+++++|+++|++||.|..|.++ ++++|||||+|.+.++|++|++.+ ..+.|++|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~--~~~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNE--VGLVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTC--CBCSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhc--CCCCCCeE
Confidence 3566666554 458999999999999999999987 467899999999999999999974 44679999
Q ss_pred EEEEcccCCC
Q 016936 225 TVRRATASSG 234 (380)
Q Consensus 225 ~v~~~~~~~~ 234 (380)
+|.|+..+..
T Consensus 83 ~V~~a~~~~~ 92 (100)
T 2d9o_A 83 KISWLEGQPQ 92 (100)
T ss_dssp EEECSSCCCC
T ss_pred EEEEccCCCC
Confidence 9999876643
No 369
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.20 E-value=8.1e-11 Score=90.91 Aligned_cols=75 Identities=16% Similarity=0.150 Sum_probs=64.3
Q ss_pred CCEEEEcCC--CCCCC--------HHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCC
Q 016936 152 PDRVFVGGL--PYYFT--------ETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD 221 (380)
Q Consensus 152 ~~~l~V~nl--p~~~t--------~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 221 (380)
++.|.|.|+ |.... +++|++.|++||.|.+|.+.++. ++|+|||+|.+.++|.+|+..|||..+.|
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 468999999 33211 25889999999999999996652 58999999999999999999999999999
Q ss_pred eEEEEEEcc
Q 016936 222 KTLTVRRAT 230 (380)
Q Consensus 222 ~~i~v~~~~ 230 (380)
+.|.|.++.
T Consensus 83 R~i~v~~~~ 91 (114)
T 3s6e_A 83 KMITAAYVP 91 (114)
T ss_dssp EECEEEEEC
T ss_pred EEEEEEEEc
Confidence 999999974
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.17 E-value=6.4e-11 Score=108.94 Aligned_cols=75 Identities=21% Similarity=0.291 Sum_probs=64.0
Q ss_pred CCCCEEEEcC--CCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeC---Ce--
Q 016936 150 EGPDRVFVGG--LPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG---DK-- 222 (380)
Q Consensus 150 ~~~~~l~V~n--lp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~-- 222 (380)
..+++|||+| |+..+++++|+++|++||.|.+|.+.. ++|||||+|.+.++|++|++.|||+.+. |+
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCce
Confidence 3447999999 588999999999999999999987753 4689999999999999999999999882 44
Q ss_pred EEEEEEcc
Q 016936 223 TLTVRRAT 230 (380)
Q Consensus 223 ~i~v~~~~ 230 (380)
.+.+.++.
T Consensus 90 ~ly~~~~~ 97 (345)
T 3tht_A 90 TLYLNFVE 97 (345)
T ss_dssp ECEEEECS
T ss_pred EEEEEEee
Confidence 57777763
No 371
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.14 E-value=6.3e-11 Score=91.65 Aligned_cols=66 Identities=12% Similarity=0.087 Sum_probs=56.3
Q ss_pred HHHHHhhcccCCeEEEEecCCCCCCCCCCCccEEEEEeec----hhh----HHHHHH--HHcCcccCCeEEEEEecccc
Q 016936 303 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYD----AVG----CATAKN--ALSGRKFGGNTVNAFYYPED 371 (380)
Q Consensus 303 ~~L~~~f~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~----~~~----A~~A~~--~l~g~~i~gr~l~v~~~~~~ 371 (380)
.+|+++|++||.|.++.++.++.+|. ++ |++||+|.+ +++ |.+|+. .|||..|+||+|+|.+-...
T Consensus 21 ~~Lk~~Fs~fGeV~~~~li~Dp~Tg~-sl--GfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 21 ISIKNYFKKYGEISHFEAFNDPNSAL-PL--HVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNKHS 96 (136)
T ss_dssp HHHHHHHHTTSCCSEEEEEECTTTCC-EE--EEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEECCTT
T ss_pred HHHHHHHHhcCCeEEEEEEecCCCCc-ee--eEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEECccc
Confidence 69999999999999999999998876 44 566999997 555 789988 89999999999999986654
No 372
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.12 E-value=5.7e-10 Score=80.78 Aligned_cols=61 Identities=8% Similarity=0.275 Sum_probs=54.4
Q ss_pred HHHHHHhhcccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCCeEEEEEeccccccc
Q 016936 302 LEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYF 374 (380)
Q Consensus 302 ~~~L~~~f~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~~~~~~~ 374 (380)
..+|.+.|++||.|..+++..+ .+||+|.+.++|.+|++ |||..++||+|+|+++.++=..
T Consensus 29 ~~~L~~~F~~~G~Vi~vr~~~d-----------~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt~dW~~ 89 (91)
T 2dnr_A 29 IDELLQQFASFGEVILIRFVED-----------KMWVTFLEGSSALNVLS-LNGKELLNRTITIALKSPSGPS 89 (91)
T ss_dssp HHHHHHHHHTTCCEEEEEECSS-----------SEEEEESSHHHHHHGGG-GTTCEETTEEEEEEECCCSSCS
T ss_pred HHHHHHHHHhCCCeEEEEEecC-----------CEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCCCCccc
Confidence 3689999999999999999874 34999999999999998 9999999999999999876443
No 373
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=8.3e-11 Score=88.59 Aligned_cols=60 Identities=17% Similarity=0.270 Sum_probs=51.9
Q ss_pred HHHHHhhcccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCCeEEEEEeccccc
Q 016936 303 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDK 372 (380)
Q Consensus 303 ~~L~~~f~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~~~~~ 372 (380)
++|+++|++||.|.+|.++.. + .|+|||+|.+.++|.+|++.+++ +.|+.|+|.|+....
T Consensus 32 ~~L~~~F~~~G~V~~v~i~~~------~--rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 32 DVLLRLLQKYGEVLNLVLSSK------K--PGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQP 91 (100)
T ss_dssp HHHHHHHHTTSCEEEEEEESS------S--SSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCC
T ss_pred HHHHHHHHhcCCEEEEEEccC------C--CCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCC
Confidence 699999999999999999842 2 36779999999999999998665 689999999987653
No 374
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.11 E-value=1.1e-10 Score=107.32 Aligned_cols=75 Identities=17% Similarity=0.236 Sum_probs=65.6
Q ss_pred hhcccceEEEcC--CCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCcee
Q 016936 28 ATRHARRVYVGG--LPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIF 104 (380)
Q Consensus 28 ~~~~~~~v~V~n--Lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i 104 (380)
.+.++++|||+| |+..+|+++|+++|++||. |.++.+..+||||||+|.+.++|++|+ .|||..+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~------------V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~ 81 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGL------------VDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEV 81 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSC------------EEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCC------------eEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCcc
Confidence 467889999999 5789999999999999998 788888889999999999999999999 8999887
Q ss_pred c---Cc--eEEEecC
Q 016936 105 E---GV--AVRVRRP 114 (380)
Q Consensus 105 ~---g~--~i~v~~~ 114 (380)
. |+ +|.+.+.
T Consensus 82 ~~~~g~~~~ly~~~~ 96 (345)
T 3tht_A 82 VDDLGQKITLYLNFV 96 (345)
T ss_dssp ECTTSCEEECEEEEC
T ss_pred ccccCCceEEEEEEe
Confidence 3 44 5777664
No 375
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.92 E-value=4.6e-09 Score=76.01 Aligned_cols=70 Identities=20% Similarity=0.306 Sum_probs=60.1
Q ss_pred EEEEcCCCC----CCCH----HHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEE
Q 016936 154 RVFVGGLPY----YFTE----TQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 225 (380)
Q Consensus 154 ~l~V~nlp~----~~t~----~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~ 225 (380)
+|+|.-.|. .+-. .+|.+.|++||.|..+++..++ +||+|.+.++|.+|++ |||..+.|+.|+
T Consensus 9 tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr~Lk 79 (91)
T 2dnr_A 9 TVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNRTIT 79 (91)
T ss_dssp EEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTEEEE
T ss_pred eEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCeEEE
Confidence 788877762 3333 5789999999999999998763 8999999999999999 999999999999
Q ss_pred EEEcccC
Q 016936 226 VRRATAS 232 (380)
Q Consensus 226 v~~~~~~ 232 (380)
|+.+++.
T Consensus 80 V~lkt~d 86 (91)
T 2dnr_A 80 IALKSPS 86 (91)
T ss_dssp EEECCCS
T ss_pred EEeCCCC
Confidence 9998754
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.91 E-value=5.1e-09 Score=80.93 Aligned_cols=72 Identities=14% Similarity=0.148 Sum_probs=65.1
Q ss_pred CCEEEEcCCCCC-CCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcC-hhHHHHHHHHhC--CCeeCCeEEEEE
Q 016936 152 PDRVFVGGLPYY-FTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQD-PAVTDIACAALN--GLKMGDKTLTVR 227 (380)
Q Consensus 152 ~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~-~~~A~~Ai~~l~--g~~~~g~~i~v~ 227 (380)
...|+|+||++. ++.++|+++|++||.|..|.+.++.. .|||+|.+ +++|..|+..++ +..|.|..+.++
T Consensus 18 G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~e 91 (121)
T 1owx_A 18 GCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWE 91 (121)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred CeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEE
Confidence 368999999999 99999999999999999999988753 69999999 799999999985 789999999988
Q ss_pred Ec
Q 016936 228 RA 229 (380)
Q Consensus 228 ~~ 229 (380)
..
T Consensus 92 vL 93 (121)
T 1owx_A 92 VL 93 (121)
T ss_dssp EC
T ss_pred EC
Confidence 75
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.82 E-value=7.9e-09 Score=75.11 Aligned_cols=57 Identities=21% Similarity=0.345 Sum_probs=51.4
Q ss_pred HHHHHHhhcccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCCeEEEEEeccc
Q 016936 302 LEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPE 370 (380)
Q Consensus 302 ~~~L~~~f~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~~~ 370 (380)
..+|.+.|++||.|..+++..+ .+||+|.+.++|.+|++ |||..++||.|+|.+...
T Consensus 38 ~~~L~~~F~~~G~Vilvr~v~d-----------~~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 38 RTELMQTLGSYGTIVLVRINQG-----------QMLVTFADSHSALSVLD-VDGMKVKGRAVKISGPSS 94 (95)
T ss_dssp HHHHHHHHHHHSCCSEEEEETT-----------EEEEECSCSHHHHHHHH-GGGSEETTEEEEEECCCC
T ss_pred HHHHHHHHHHCCCEEEEEEecC-----------cEEEEEcChHHHHHHHh-cCCeeeCCeEEEEeccCC
Confidence 3589999999999999999874 35999999999999998 999999999999998653
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.73 E-value=3.2e-08 Score=86.11 Aligned_cols=67 Identities=16% Similarity=0.161 Sum_probs=60.1
Q ss_pred CCHHHHHHHHHhcCCeeEEEEeeCCC----CCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEcc
Q 016936 164 FTETQIKELLESFGTLHGFDLVKDRD----TGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 230 (380)
Q Consensus 164 ~t~~~l~~~F~~~G~i~~v~l~~~~~----~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~~ 230 (380)
-.+++|.+.|++||.|.++.++++.. +++++|++||+|.+.++|.+|+..|||+.+.||.|.+.+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 35679999999999999999986533 44899999999999999999999999999999999999974
No 379
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.70 E-value=2.6e-08 Score=76.94 Aligned_cols=73 Identities=10% Similarity=0.043 Sum_probs=64.8
Q ss_pred hcccceEEEcCCCCc-CcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCC-HHHHHHHH-HcC--Cce
Q 016936 29 TRHARRVYVGGLPPL-ANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRT-VEEASNAM-ALD--GII 103 (380)
Q Consensus 29 ~~~~~~v~V~nLp~~-~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~-~~~a~~ai-~l~--~~~ 103 (380)
-...+.|+|+||+++ ++.++|+++|++||. |..+.+..+.-.|||+|.+ ..+|..|+ +++ +..
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~------------V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~ 82 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGE------------IKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQ 82 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCC------------EEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBC
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCC------------EEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcE
Confidence 356789999999999 999999999999987 8888888888899999999 89999999 774 677
Q ss_pred ecCceEEEec
Q 016936 104 FEGVAVRVRR 113 (380)
Q Consensus 104 i~g~~i~v~~ 113 (380)
|.|..+++..
T Consensus 83 i~g~~~~~ev 92 (121)
T 1owx_A 83 LRNKEVTWEV 92 (121)
T ss_dssp TTSSSEEEEE
T ss_pred EeCcEEEEEE
Confidence 8998888864
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.70 E-value=5.1e-08 Score=70.88 Aligned_cols=69 Identities=14% Similarity=0.200 Sum_probs=59.5
Q ss_pred CEEEEcCCCCC-----CCH----HHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeE
Q 016936 153 DRVFVGGLPYY-----FTE----TQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKT 223 (380)
Q Consensus 153 ~~l~V~nlp~~-----~t~----~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 223 (380)
-+|+|.-++.. +-. .+|.+.|++||.|..+++..++ +||+|.+.++|.+|++ |+|..+.||.
T Consensus 16 ~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~Gr~ 86 (95)
T 1ufw_A 16 ATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVKGRA 86 (95)
T ss_dssp CEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEETTEE
T ss_pred CeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeCCeE
Confidence 48999888743 322 4789999999999999998773 9999999999999999 9999999999
Q ss_pred EEEEEcc
Q 016936 224 LTVRRAT 230 (380)
Q Consensus 224 i~v~~~~ 230 (380)
|+|++..
T Consensus 87 L~V~~k~ 93 (95)
T 1ufw_A 87 VKISGPS 93 (95)
T ss_dssp EEEECCC
T ss_pred EEEeccC
Confidence 9999754
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.53 E-value=9.2e-07 Score=65.51 Aligned_cols=72 Identities=15% Similarity=0.152 Sum_probs=67.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhc-----CCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEE
Q 016936 152 PDRVFVGGLPYYFTETQIKELLESF-----GTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 226 (380)
Q Consensus 152 ~~~l~V~nlp~~~t~~~l~~~F~~~-----G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v 226 (380)
.++|-+-|||+.++...|+.+.+++ |.+..+.+..|. +-|+|+|.+...|-+|.-.|+|.+|.|++|+|
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 4799999999999999999999999 999999998884 36999999999999999999999999999999
Q ss_pred EEc
Q 016936 227 RRA 229 (380)
Q Consensus 227 ~~~ 229 (380)
...
T Consensus 95 gTv 97 (117)
T 2l9w_A 95 GTI 97 (117)
T ss_dssp ECH
T ss_pred cCH
Confidence 865
No 382
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=2.1e-06 Score=63.19 Aligned_cols=94 Identities=20% Similarity=0.294 Sum_probs=74.7
Q ss_pred cccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHHHcCCceecCceE
Q 016936 30 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAV 109 (380)
Q Consensus 30 ~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai~l~~~~i~g~~i 109 (380)
.-.++|.|.|||+++.++.|.-+|..-- . ..+..|.++.... +-|+|+|.+.+.|++.++...+.|.+.+|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~r-r------sGGG~V~~v~~~~--~~AvItF~d~~va~rVL~k~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRR-R------SGGGPVLSWQRLG--CGGVLTFREPADAERVLAQADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTT-T------TCCCCEEEEEEET--TEEEEEESSHHHHHHHHTCSCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCC-c------CCCceeeEEEEcC--CcEEEEEcChHHHHHHhcCCcceecCeEE
Confidence 3468999999999999999999998731 0 1123588888766 88999999999999999888889999999
Q ss_pred EEecCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCEEEEcCCCCCCC
Q 016936 110 RVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFT 165 (380)
Q Consensus 110 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t 165 (380)
.|.+.... .+.++++++||+.++
T Consensus 77 sV~P~~~~---------------------------------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 77 SLRPAPPR---------------------------------APARLLLQGLPPGTS 99 (104)
T ss_dssp EEEECCCC---------------------------------CCCCCCCCSCCCCCC
T ss_pred EEEcCCCC---------------------------------CcceEeeecCCCCCC
Confidence 99763322 235889999988765
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.34 E-value=2.8e-06 Score=62.96 Aligned_cols=78 Identities=14% Similarity=0.204 Sum_probs=67.8
Q ss_pred hcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceecCc
Q 016936 29 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 107 (380)
Q Consensus 29 ~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~g~ 107 (380)
....|+|-+-|||..++...|+.++..+-.|.. +.+..+.+.++-+-|+|+|.+...|.+|. .|+|..|.|+
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~-------g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr 90 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINE-------KDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGK 90 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCT-------TTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCc-------cceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCe
Confidence 345899999999999999999999999933221 12778888899999999999999999999 9999999999
Q ss_pred eEEEec
Q 016936 108 AVRVRR 113 (380)
Q Consensus 108 ~i~v~~ 113 (380)
+|++.-
T Consensus 91 ~Lr~gT 96 (117)
T 2l9w_A 91 VIRSGT 96 (117)
T ss_dssp EEEEEC
T ss_pred EEEecC
Confidence 999974
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.84 E-value=8.5e-05 Score=54.88 Aligned_cols=60 Identities=12% Similarity=0.178 Sum_probs=53.1
Q ss_pred HHHHHhhcccCCeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCCeEEEEEecccc
Q 016936 303 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 371 (380)
Q Consensus 303 ~~L~~~f~~~G~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~~~~ 371 (380)
+.++++|..|+++......+.- .-+.|.|.++++|.+|-..||+..|+|++++|.|+...
T Consensus 25 ~~~e~Lf~~~~~~~tF~~lkSF---------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~ 84 (104)
T 1wey_A 25 AKFESLFRTYDKDTTFQYFKSF---------KRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTL 84 (104)
T ss_dssp HHHHHHHHTTCSSCEEEEETTT---------TEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCS
T ss_pred HHHHHHHHhhCcCcceeecCcc---------eEEEEEeCChHHHHHHHHHhccceecCceeEEEecCCC
Confidence 5788999999999888887743 36799999999999999999999999999999998753
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.78 E-value=9e-05 Score=54.76 Aligned_cols=77 Identities=12% Similarity=0.087 Sum_probs=64.1
Q ss_pred CCCCEEEEcCCCCCC-C----HHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEE
Q 016936 150 EGPDRVFVGGLPYYF-T----ETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTL 224 (380)
Q Consensus 150 ~~~~~l~V~nlp~~~-t----~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i 224 (380)
..+++|+|.||+..+ . .+.++++|++|+.+....+.+.- . -..|.|.++++|.+|...||+..+.|.+|
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF--R----Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~ 76 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF--K----RVRINFSNPLSAADARLRLHKTEFLGKEM 76 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT--T----EEEEECSSTTHHHHHHHTSTTSEETTEEC
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc--e----EEEEEeCChHHHHHHHHHhccceecCcee
Confidence 445799999998754 2 25789999999999888777652 1 46799999999999999999999999999
Q ss_pred EEEEcccC
Q 016936 225 TVRRATAS 232 (380)
Q Consensus 225 ~v~~~~~~ 232 (380)
+|-++.+.
T Consensus 77 r~YFgq~~ 84 (104)
T 1wey_A 77 KLYFAQTL 84 (104)
T ss_dssp EEECCCCS
T ss_pred EEEecCCC
Confidence 99998643
No 386
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.70 E-value=0.00046 Score=50.74 Aligned_cols=76 Identities=20% Similarity=0.284 Sum_probs=62.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHh-c----CCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeE
Q 016936 149 AEGPDRVFVGGLPYYFTETQIKELLES-F----GTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKT 223 (380)
Q Consensus 149 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~----G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 223 (380)
.....+|.|.|||..++++.|.-+|+. . |.|..++... +-|+|+|.+.+.|++.++. ..+.|.+..
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~ 75 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQ 75 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSB
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeE
Confidence 344579999999999999999999996 2 4687776643 3699999999999999984 478999999
Q ss_pred EEEEEcccCC
Q 016936 224 LTVRRATASS 233 (380)
Q Consensus 224 i~v~~~~~~~ 233 (380)
|.|....++.
T Consensus 76 LsV~P~~~~~ 85 (104)
T 2dhx_A 76 LSLRPAPPRA 85 (104)
T ss_dssp CEEEECCCCC
T ss_pred EEEEcCCCCC
Confidence 9998866553
No 387
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.44 E-value=0.00063 Score=49.34 Aligned_cols=54 Identities=20% Similarity=0.414 Sum_probs=46.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHh
Q 016936 153 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 214 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l 214 (380)
.+||.-++|..|...||.++|+.||.| .|+++.|- .|||.|.+++.|..|+..+
T Consensus 16 ~HVf~l~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHVTFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEEECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CeEEEEeCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 355555999999999999999999955 57887762 6999999999999999976
No 388
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.33 E-value=0.00088 Score=50.91 Aligned_cols=77 Identities=19% Similarity=0.305 Sum_probs=59.9
Q ss_pred cchhhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHHHcCCce
Q 016936 24 MTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGII 103 (380)
Q Consensus 24 ~~~~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai~l~~~~ 103 (380)
+........+-|-|-+.|+.. -..|..+|++||. |++.........-.|.|.++.+|++||..||+.
T Consensus 16 l~~~~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~------------Iv~~~~~~~~NWihI~Y~s~~~A~rAL~kNG~i 82 (119)
T 1wwh_A 16 LTSEDHLDDTWVTVFGFPQAS-ASYILLQFAQYGN------------ILKHVMSNTGNWMHIRYQSKLQARKALSKDGRI 82 (119)
T ss_dssp -----CGGGGEEEEECCCGGG-HHHHHHHHHTTSC------------EEEEEECSSSSEEEEEESSHHHHHHHHTTTTCE
T ss_pred cCCCCCCCCCEEEEECCCHHH-HHHHHHHHHhhCc------------EEEeccCCCCCeEEEEeCCHHHHHHHHHhCCeE
Confidence 333455678899999999885 6788899999998 555555567789999999999999999999999
Q ss_pred ecC-ceEEEec
Q 016936 104 FEG-VAVRVRR 113 (380)
Q Consensus 104 i~g-~~i~v~~ 113 (380)
+.| -.|=|.+
T Consensus 83 i~g~~mIGV~p 93 (119)
T 1wwh_A 83 FGESIMIGVKP 93 (119)
T ss_dssp ETTTEECEEEE
T ss_pred ecCCEEEEEEE
Confidence 986 4455654
No 389
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.20 E-value=0.0017 Score=47.12 Aligned_cols=68 Identities=13% Similarity=0.204 Sum_probs=57.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCC--CceEEEEEEcChhHHHHHHHHhCCCeeC
Q 016936 153 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN--SKGYGFCVYQDPAVTDIACAALNGLKMG 220 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 220 (380)
.+|.|++||+.+|++++.+.+.....+....+..++.+.. .-.-|+|.|.+.+++....+.++|+.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 4799999999999999999999988887777777643322 3346999999999999999999998773
No 390
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.18 E-value=0.0011 Score=50.32 Aligned_cols=71 Identities=17% Similarity=0.216 Sum_probs=58.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCC-eEEEEEEcc
Q 016936 152 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD-KTLTVRRAT 230 (380)
Q Consensus 152 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-~~i~v~~~~ 230 (380)
.+.|.|-+.|.. ....|..+|++||.|.+...... ..+--|+|.++.+|++|+.. ||..+.| ..|=|.+..
T Consensus 24 ~~wVtVFGFp~~-~~~~VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 24 DTWVTVFGFPQA-SASYILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGEEEEECCCGG-GHHHHHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEECC
T ss_pred CCEEEEECCCHH-HHHHHHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEECC
Confidence 468999999988 57889999999999988876322 24888999999999999995 9999975 666777653
No 391
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.12 E-value=0.00078 Score=49.05 Aligned_cols=54 Identities=19% Similarity=0.388 Sum_probs=46.4
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhC
Q 016936 154 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALN 215 (380)
Q Consensus 154 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~ 215 (380)
.||.-++|..|...||..+|+.||.| .|.++.|- .|||.|.+++.|..|+..+.
T Consensus 7 HV~~l~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHVTFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEEeCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 56655999999999999999999944 57887762 69999999999999999764
No 392
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.79 E-value=0.0012 Score=47.85 Aligned_cols=62 Identities=15% Similarity=0.227 Sum_probs=47.8
Q ss_pred ceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEec--C------CCcEEEEEeCCHHHHHHHH-HcCCce
Q 016936 33 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN--H------EKKFAFVEMRTVEEASNAM-ALDGII 103 (380)
Q Consensus 33 ~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~--~------~~g~afV~f~~~~~a~~ai-~l~~~~ 103 (380)
++|-|++||+.+||+++.+.++.... +...... + .-.-|||.|.+.+++.... .++|..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~------------~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~ 69 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPE------------HDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYV 69 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCC------------EEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCccc------------ceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcE
Confidence 68999999999999999988876632 3333321 1 1257999999999999999 799988
Q ss_pred ecC
Q 016936 104 FEG 106 (380)
Q Consensus 104 i~g 106 (380)
+.+
T Consensus 70 F~D 72 (91)
T 1uw4_A 70 FLD 72 (91)
T ss_dssp EEC
T ss_pred EEc
Confidence 764
No 393
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.21 E-value=0.0055 Score=44.45 Aligned_cols=53 Identities=17% Similarity=0.202 Sum_probs=41.5
Q ss_pred ccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHHH
Q 016936 31 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA 98 (380)
Q Consensus 31 ~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai~ 98 (380)
..+.++| ++|+++.-.||.++|+.||.+ .+... +--.|||.|.+++.|..|+.
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv-----------~I~Wi---dDTsAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNI-----------QISWI---DDTSAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSC-----------CCEEE---ETTEEEEECSCHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCE-----------EEEEE---cCCeEEEEecCHHHHHHHHH
Confidence 3455666 999999999999999999853 22222 23469999999999999993
No 394
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.90 E-value=0.0022 Score=60.89 Aligned_cols=68 Identities=16% Similarity=0.178 Sum_probs=49.1
Q ss_pred hhhcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCc-EEEEEeCCHHHHHHHHHcCCceec
Q 016936 27 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKK-FAFVEMRTVEEASNAMALDGIIFE 105 (380)
Q Consensus 27 ~~~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g-~afV~f~~~~~a~~ai~l~~~~i~ 105 (380)
..++..|+|+|. .|...++++|.++|++||+ |.++...+++| ||.|+|.+.+++..++....+...
T Consensus 48 r~~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~------------i~~~~~~~~~g~~~~vef~~~~~~~~~~~~~~~p~~ 114 (464)
T 3pq1_A 48 RREQAQRTVLIH-CPEKISENKFLKYLSQFGP------------INNHFFYESFGLYAVVEFCQKESIGSLQNGTHTPXX 114 (464)
T ss_dssp HHHHHHTEEEEE-ECCC---CHHHHHHGGGSC------------CCCEEEECSSSEEEEEECC---CCHHHHSSCCCCCC
T ss_pred HHHHhcceEEEE-cCCCCCHHHHHHHHHhcCC------------cceEEEEccCCeEEEEEeCCHHHHHHHHhccCCCcc
Confidence 356888999997 7999999999999999998 56666666766 899999999999988854444444
Q ss_pred Cc
Q 016936 106 GV 107 (380)
Q Consensus 106 g~ 107 (380)
+.
T Consensus 115 ~~ 116 (464)
T 3pq1_A 115 XX 116 (464)
T ss_dssp BC
T ss_pred cc
Confidence 43
No 395
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.89 E-value=0.012 Score=45.25 Aligned_cols=76 Identities=22% Similarity=0.316 Sum_probs=56.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeE-EEEeeCCC--------CC-----CCceEEEEEEcChhHHHHHHHHhCCCe
Q 016936 153 DRVFVGGLPYYFTETQIKELLESFGTLHG-FDLVKDRD--------TG-----NSKGYGFCVYQDPAVTDIACAALNGLK 218 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~-v~l~~~~~--------~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~ 218 (380)
..|.|-+.|.. ....+.++|++||.|.+ ....+... .. ...++.-|+|.++.+|.+|+.. ||..
T Consensus 8 ~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGAV 85 (132)
T ss_dssp CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTCE
T ss_pred eEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCeE
Confidence 47888899776 66778899999999865 22221000 00 1235778999999999999995 9999
Q ss_pred eCCeEEEEEEcc
Q 016936 219 MGDKTLTVRRAT 230 (380)
Q Consensus 219 ~~g~~i~v~~~~ 230 (380)
+.|.-|=|.+..
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999988888763
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.66 E-value=0.011 Score=43.01 Aligned_cols=68 Identities=15% Similarity=0.190 Sum_probs=50.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCC--CceEEEEEEcChhHHHHHHHHhCCCee
Q 016936 152 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN--SKGYGFCVYQDPAVTDIACAALNGLKM 219 (380)
Q Consensus 152 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~ 219 (380)
+-+|.|+.||+..|++++.+.++..-.+....+..++.+.. .-..|+|.|.+.++.....+..+|..+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 35899999999999999988888655544433433322211 123599999999999999999999877
No 397
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.62 E-value=0.0091 Score=45.97 Aligned_cols=82 Identities=15% Similarity=0.220 Sum_probs=54.3
Q ss_pred cceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCee-----E-EEEec--CCCcEEEEEeCCHHHHHHHHHcCCce
Q 016936 32 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAV-----V-NVYIN--HEKKFAFVEMRTVEEASNAMALDGII 103 (380)
Q Consensus 32 ~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i-----~-~~~~~--~~~g~afV~f~~~~~a~~ai~l~~~~ 103 (380)
..-|-|=+.|+. ....+-++|++||.|..-......... . ..+.. ...+...|.|+++.+|.+||..||+.
T Consensus 7 e~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 455777789755 456778899999998652211000000 0 00011 13568899999999999999999999
Q ss_pred ecCceEEEecC
Q 016936 104 FEGVAVRVRRP 114 (380)
Q Consensus 104 i~g~~i~v~~~ 114 (380)
|.|.-|-|.+-
T Consensus 86 i~G~mIGV~Py 96 (132)
T 3p3d_A 86 FNGVLLGVIPY 96 (132)
T ss_dssp ETTEECEEEEC
T ss_pred eCcEEEEEEEC
Confidence 99987777653
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.34 E-value=0.0098 Score=56.51 Aligned_cols=55 Identities=15% Similarity=0.240 Sum_probs=42.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHH
Q 016936 153 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 213 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~ 213 (380)
+.|+|. .|...++.+|.++|++||.|..+.+..+ .| -||+|+|.+.+++..++..
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~--~g---~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES--FG---LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS--SS---EEEEEECC---CCHHHHSS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc--CC---eEEEEEeCCHHHHHHHHhc
Confidence 789998 6999999999999999999999988765 23 5999999999999977654
No 399
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=94.89 E-value=0.011 Score=43.08 Aligned_cols=52 Identities=17% Similarity=0.176 Sum_probs=40.7
Q ss_pred cceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHHH
Q 016936 32 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA 98 (380)
Q Consensus 32 ~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai~ 98 (380)
.+.++| ++|+++.-.||.++|+.||.+ . +.+. +--.|||.|.+++.|..|+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fggv------------~-I~Wi-dDTsAlvvf~~~~~a~~al~ 57 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFGNI------------Q-ISWI-DDTSAFVSLSQPEQVKIAVN 57 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSEEE------------E-EEEE-ETTEEEEEEEEECHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccCCE------------E-EEEE-cCCeEEEEecCHHHHHHHHH
Confidence 345556 999999999999999999852 2 2222 23469999999999999993
No 400
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=94.89 E-value=0.012 Score=42.95 Aligned_cols=64 Identities=17% Similarity=0.212 Sum_probs=45.6
Q ss_pred ccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecC--------CCcEEEEEeCCHHHHHHHH-HcCC
Q 016936 31 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH--------EKKFAFVEMRTVEEASNAM-ALDG 101 (380)
Q Consensus 31 ~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~--------~~g~afV~f~~~~~a~~ai-~l~~ 101 (380)
.+-+|-|+.||+.+||+++.+.++..=. +.-....+ .-.-|||.|.+.++..... ..+|
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~------------~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g 75 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPA------------HDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDG 75 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSS------------EEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTT
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCc------------cceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCC
Confidence 4568999999999999997766654311 21111111 1146999999999999999 7999
Q ss_pred ceecC
Q 016936 102 IIFEG 106 (380)
Q Consensus 102 ~~i~g 106 (380)
..+.+
T Consensus 76 ~~F~D 80 (97)
T 2l08_A 76 YIFLD 80 (97)
T ss_dssp EEEEC
T ss_pred cEEEe
Confidence 87754
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=88.14 E-value=1.4 Score=42.49 Aligned_cols=54 Identities=19% Similarity=0.385 Sum_probs=44.4
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhC
Q 016936 154 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALN 215 (380)
Q Consensus 154 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~ 215 (380)
.+++-.+|..|...+|.+.|+.||.+ .|+++.+ ..|||.|.+.+.|..++..++
T Consensus 441 ~vl~v~f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHVTFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEEECCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred cEEEEeCCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 35554599999999999999999954 5666544 279999999999999999885
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=71.12 E-value=5.8 Score=38.16 Aligned_cols=54 Identities=17% Similarity=0.203 Sum_probs=42.7
Q ss_pred cceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcC
Q 016936 32 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALD 100 (380)
Q Consensus 32 ~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~ 100 (380)
+..++|+ +|..+...+|.+.|+.||. + ++.+. +...|||.|.+.+.|..++ .+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~------------v-~V~wi-ddt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN------------I-QISWI-DDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC------------C-EEEEC-SSSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC------------E-EEEEE-cCCeEEEEECCHHHHHHHHHHHH
Confidence 4577776 9999999999999999974 2 23322 5567999999999999999 554
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=69.60 E-value=26 Score=24.55 Aligned_cols=54 Identities=13% Similarity=0.151 Sum_probs=46.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHh
Q 016936 153 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 214 (380)
Q Consensus 153 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l 214 (380)
.-|-|-|+|..+-..++.-..+..|.--.|.... |.|.+.|.+.++-+.|+..|
T Consensus 13 clikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 13 CLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHH
T ss_pred cEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHH
Confidence 5788999999999999998889889877787753 35999999999999999986
No 404
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=52.76 E-value=19 Score=24.22 Aligned_cols=44 Identities=7% Similarity=0.039 Sum_probs=31.5
Q ss_pred CeEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCcccCCeEEEEEecc
Q 016936 314 TLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYP 369 (380)
Q Consensus 314 ~I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~~i~gr~l~v~~~~ 369 (380)
.|-.+.+... +.||+-. .+.|..+++.|++..+.|+.++++.+.
T Consensus 32 ~IG~I~i~d~-----------~s~v~v~-~~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 32 DIGIITIMDN-----------ASYVEIL-NGKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp GEEEEEECSS-----------CEEEEEC-TTCHHHHHHHHTTCCC---CCCEEECC
T ss_pred hccEEEEeCC-----------cEEEEEC-HHHHHHHHHHhccccCcCceEEEEECC
Confidence 4666777542 5588866 567899999999999999999998763
No 405
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=50.42 E-value=53 Score=21.89 Aligned_cols=59 Identities=7% Similarity=0.091 Sum_probs=39.4
Q ss_pred CCCCHHHHHHHHHhcCC-----eeEEEEeeCCCCCCCceEEEEEEcChhHHHHHHHHhCCCeeCCeEEEEEEc
Q 016936 162 YYFTETQIKELLESFGT-----LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 229 (380)
Q Consensus 162 ~~~t~~~l~~~F~~~G~-----i~~v~l~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~~ 229 (380)
..+...+|..++..-+. |-.+++..+ |.||+..... |..+++.|++..+.|+.+.++.+
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNGK-GPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTTC-HHHHHHHHTTCCC---CCCEEEC
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHHH-HHHHHHHhccccCcCceEEEEEC
Confidence 44677788888886554 445666433 7899887665 88899999999999999988875
No 406
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=44.76 E-value=43 Score=26.82 Aligned_cols=51 Identities=10% Similarity=0.059 Sum_probs=36.0
Q ss_pred CEEEEcCCCC-C--------CCHHHHHHHH--HhcCCeeEEEEeeCCCCCCCceEEEEEEcChhH
Q 016936 153 DRVFVGGLPY-Y--------FTETQIKELL--ESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAV 206 (380)
Q Consensus 153 ~~l~V~nlp~-~--------~t~~~l~~~F--~~~G~i~~v~l~~~~~~~~~~g~afV~f~~~~~ 206 (380)
..+.|.|+|. . ....+|++.| +.|.++.-..+ .++ ..+.|+|+|.|.+.-.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l-~~~--~Gh~g~aIv~F~~dw~ 74 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPL-WNY--LGHSGTAIVEFNKDWN 74 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEE-ECS--SBEEEEEEEECCSSHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEec-ccC--CCCceeEEEEecCChH
Confidence 4778888887 2 2347899977 88999864444 442 4478899999976543
No 407
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=36.89 E-value=93 Score=21.74 Aligned_cols=68 Identities=9% Similarity=0.115 Sum_probs=47.2
Q ss_pred hcccceEEEcCCCCcCcHHHHHHHHHHHHHhccCCCCCCCCeeEEEEecCCCcEEEEEeCCHHHHHHHH-HcCCceecCc
Q 016936 29 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 107 (380)
Q Consensus 29 ~~~~~~v~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~i~~~~~~~~~g~afV~f~~~~~a~~ai-~l~~~~i~g~ 107 (380)
....|-|.|-|+|..+-..++.-..+-.|- .+....-.|.|.+.|.+.++...|+ ++-+. .+.
T Consensus 9 ikqnclikiinipqgtlkaevvlavrhlgy--------------efycdyidgqamirfqnsdeqrlaiqkllnh--nnn 72 (129)
T 4eyt_A 9 IKQNCLIKIINIPQGTLKAEVVLAVRHLGY--------------EFYCDYIDGQAMIRFQNSDEQRLAIQKLLNH--NNN 72 (129)
T ss_dssp -CCSCEEEEECCCTTCCHHHHHHHHHTTCC--------------CEEEEECSSCEEEEESSHHHHHHHHHHHEET--TTT
T ss_pred hhhCcEEEEEecCCCceeeeeEEeehhcCe--------------eEeeeeecCeeEEEecCChHHHHHHHHHHhc--CCC
Confidence 356788999999999999998877776653 1222224578999999999999999 53221 134
Q ss_pred eEEEe
Q 016936 108 AVRVR 112 (380)
Q Consensus 108 ~i~v~ 112 (380)
++++.
T Consensus 73 klqie 77 (129)
T 4eyt_A 73 KLQIE 77 (129)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 45554
No 408
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=24.40 E-value=1.8e+02 Score=20.25 Aligned_cols=34 Identities=9% Similarity=0.073 Sum_probs=25.4
Q ss_pred eEEEEecCCCCCCCCCCCccEEEEEeechhhHHHHHHHHcCc
Q 016936 315 LVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGR 356 (380)
Q Consensus 315 I~~v~i~~~~~~~~~~~g~g~afV~f~~~~~A~~A~~~l~g~ 356 (380)
|.++.++..- + ||.||+++..++...++..+.|-
T Consensus 40 i~~v~vP~~f------P--GYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 40 VYSILASESL------K--GYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp EEEEEECTTS------T--TEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEEeccc------C--CEEEEEEecchhHHHHHHCCCCc
Confidence 6777776532 2 68899999998888888777654
Done!