BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016940
(380 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8
pdb|4DNW|B Chain B, Crystal Structure Of Uvb-Resistance Protein Uvr8
Length = 374
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/296 (23%), Positives = 125/296 (42%), Gaps = 11/296 (3%)
Query: 51 GPGHSIAVTSKGV-VYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXXXXXXXXXXTML 109
G H++A + G+ VYS+G G+LGHG + + + P PI++L +
Sbjct: 64 GADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLA 123
Query: 110 ISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGR 169
++ G+V ++G++ G+ G LV PQ +++ + I + A G TA ++ +G
Sbjct: 124 VTMEGEVQSWGRNQNGQLGLGDTEDSLV--PQKIQAFEGIRIKMVAAGAEHTAAVTEDGD 181
Query: 170 VYTFSWGNDARLGHHTEPNDVEPHPLLGT-LENIPVVQIXXXXXXXXXXXXQPSGMAVYS 228
+Y + WG LG + + P + T E + +V A+Y+
Sbjct: 182 LYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSG-----ALYT 236
Query: 229 VXXXXXXXXXXXSRTDEKHPRLIEQFQLLNLQPXXXXXXXXXXXXXGQDGRVCTWGWGRY 288
D P +E L N DG++ WGW ++
Sbjct: 237 YGWSKYGQLGHGDLEDHLIPHKLE--ALSNSFISQISGGWRHTMALTSDGKLYGWGWNKF 294
Query: 289 GCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLG 344
G +G GN + P V+ +D K + V+ G T V+E +V+++G G + LG
Sbjct: 295 GQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLG 350
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 119/296 (40%), Gaps = 9/296 (3%)
Query: 50 AGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXXXXXXXXXXTML 109
AG HS+A+ S +V S+G GQLGHG E+ P + +L T+
Sbjct: 11 AGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVA 70
Query: 110 ISDAG-QVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREG 168
S +G +VY++G FG +G + L T P +++L I + Q A G+ ++ EG
Sbjct: 71 YSQSGMEVYSWGWGDFGRLGHG-NSSDLFT-PLPIKALHGIRIKQIACGDSHCLAVTMEG 128
Query: 169 RVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIXXXXXXXXXXXXQPSGMAVYS 228
V ++ + +LG + + P + E I + + +Y
Sbjct: 129 EVQSWGRNQNGQLGLGDTEDSLVPQKIQ-AFEGIRIKMVAAGAEHTAAVTEDGD---LYG 184
Query: 229 VXXXXXXXXXXXSRTDEKHPRLIEQFQLLNLQPXXXXXXXXXXXXXGQDGRVCTWGWGRY 288
RTD P + + G + T+GW +Y
Sbjct: 185 WGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSY--SGALYTYGWSKY 242
Query: 289 GCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLG 344
G LGHG+ E +P ++AL++ ++ G T ++ DG +Y +G + +G
Sbjct: 243 GQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVG 298
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 74/161 (45%), Gaps = 3/161 (1%)
Query: 47 QAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXXXXXXXXXX 106
Q G H +AVT +G V S+G N +GQLG G TE+ P+ I++
Sbjct: 113 QIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEH 172
Query: 107 TMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSR 166
T +++ G +Y +G +G G + +LV P+ V S + A G T +S
Sbjct: 173 TAAVTEDGDLYGWGWGRYGNLGLGDRTDRLV--PERVTSTGGEKMSMVACGWRHTISVSY 230
Query: 167 EGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQI 207
G +YT+ W +LGH + + PH L L N + QI
Sbjct: 231 SGALYTYGWSKYGQLGHGDLEDHLIPHKLE-ALSNSFISQI 270
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%)
Query: 280 VCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGE 339
V +WGWG +G LGHGN P ++AL+ ++ +A GD V+ +G+V S+G +
Sbjct: 78 VYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQ 137
Query: 340 SASLGHNAIADGQV 353
+ LG D V
Sbjct: 138 NGQLGLGDTEDSLV 151
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 280 VCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDG-DVYSFGCG 338
VC+WG G G LGHG+ E P + AL+ + + V G T S+ G +VYS+G G
Sbjct: 25 VCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWG 84
Query: 339 ESASLGHNAIAD 350
+ LGH +D
Sbjct: 85 DFGRLGHGNSSD 96
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 47 QAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSL 92
Q G H++AVT + V+++G ++GQLG G + + P+ I +L
Sbjct: 321 QVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 366
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|B Chain B, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|C Chain C, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|D Chain D, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
Length = 370
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/296 (23%), Positives = 125/296 (42%), Gaps = 11/296 (3%)
Query: 51 GPGHSIAVTSKGV-VYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXXXXXXXXXXTML 109
G H++A + G+ VYS+G G+LGHG + + + P PI++L +
Sbjct: 64 GADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLA 123
Query: 110 ISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGR 169
++ G+V ++G++ G+ G LV PQ +++ + I + A G TA ++ +G
Sbjct: 124 VTMEGEVQSWGRNQNGQLGLGDTEDSLV--PQKIQAFEGIRIKMVAAGAEHTAAVTEDGD 181
Query: 170 VYTFSWGNDARLGHHTEPNDVEPHPLLGT-LENIPVVQIXXXXXXXXXXXXQPSGMAVYS 228
+Y + WG LG + + P + T E + +V A+Y+
Sbjct: 182 LYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSG-----ALYT 236
Query: 229 VXXXXXXXXXXXSRTDEKHPRLIEQFQLLNLQPXXXXXXXXXXXXXGQDGRVCTWGWGRY 288
D P +E L N DG++ WGW ++
Sbjct: 237 YGWSKYGQLGHGDLEDHLIPHKLE--ALSNSFISQISGGFRHTMALTSDGKLYGWGWNKF 294
Query: 289 GCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLG 344
G +G GN + P V+ +D K + V+ G T V+E +V+++G G + LG
Sbjct: 295 GQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLG 350
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 119/296 (40%), Gaps = 9/296 (3%)
Query: 50 AGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXXXXXXXXXXTML 109
AG HS+A+ S +V S+G GQLGHG E+ P + +L T+
Sbjct: 11 AGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVA 70
Query: 110 ISDAG-QVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREG 168
S +G +VY++G FG +G + L T P +++L I + Q A G+ ++ EG
Sbjct: 71 YSQSGMEVYSWGWGDFGRLGHG-NSSDLFT-PLPIKALHGIRIKQIACGDSHCLAVTMEG 128
Query: 169 RVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIXXXXXXXXXXXXQPSGMAVYS 228
V ++ + +LG + + P + E I + + +Y
Sbjct: 129 EVQSWGRNQNGQLGLGDTEDSLVPQKIQ-AFEGIRIKMVAAGAEHTAAVTEDGD---LYG 184
Query: 229 VXXXXXXXXXXXSRTDEKHPRLIEQFQLLNLQPXXXXXXXXXXXXXGQDGRVCTWGWGRY 288
RTD P + + G + T+GW +Y
Sbjct: 185 WGWGRYGNLGLGDRTDRLVPERVTSTGGEKMS--MVACGWRHTISVSYSGALYTYGWSKY 242
Query: 289 GCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLG 344
G LGHG+ E +P ++AL++ ++ G T ++ DG +Y +G + +G
Sbjct: 243 GQLGHGDLEDHLIPHKLEALSNSFISQISGGFRHTMALTSDGKLYGWGWNKFGQVG 298
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 74/161 (45%), Gaps = 3/161 (1%)
Query: 47 QAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXXXXXXXXXX 106
Q G H +AVT +G V S+G N +GQLG G TE+ P+ I++
Sbjct: 113 QIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEH 172
Query: 107 TMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSR 166
T +++ G +Y +G +G G + +LV P+ V S + A G T +S
Sbjct: 173 TAAVTEDGDLYGWGWGRYGNLGLGDRTDRLV--PERVTSTGGEKMSMVACGWRHTISVSY 230
Query: 167 EGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQI 207
G +YT+ W +LGH + + PH L L N + QI
Sbjct: 231 SGALYTYGWSKYGQLGHGDLEDHLIPHKLE-ALSNSFISQI 270
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%)
Query: 280 VCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGE 339
V +WGWG +G LGHGN P ++AL+ ++ +A GD V+ +G+V S+G +
Sbjct: 78 VYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQ 137
Query: 340 SASLGHNAIADGQV 353
+ LG D V
Sbjct: 138 NGQLGLGDTEDSLV 151
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 280 VCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDG-DVYSFGCG 338
VC+WG G G LGHG+ E P + AL+ + + V G T S+ G +VYS+G G
Sbjct: 25 VCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWG 84
Query: 339 ESASLGHNAIAD 350
+ LGH +D
Sbjct: 85 DFGRLGHGNSSD 96
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 47 QAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSL 92
Q G H++AVT + V+++G ++GQLG G + + P+ I +L
Sbjct: 321 QVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 366
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
pdb|4D9S|B Chain B, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
Length = 406
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/296 (23%), Positives = 125/296 (42%), Gaps = 11/296 (3%)
Query: 51 GPGHSIAVTSKGV-VYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXXXXXXXXXXTML 109
G H++A + G+ VYS+G G+LGHG + + + P PI++L +
Sbjct: 76 GADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLA 135
Query: 110 ISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGR 169
++ G+V ++G++ G+ G LV PQ +++ + I + A G TA ++ +G
Sbjct: 136 VTMEGEVQSWGRNQNGQLGLGDTEDSLV--PQKIQAFEGIRIKMVAAGAEHTAAVTEDGD 193
Query: 170 VYTFSWGNDARLGHHTEPNDVEPHPLLGT-LENIPVVQIXXXXXXXXXXXXQPSGMAVYS 228
+Y + WG LG + + P + T E + +V A+Y+
Sbjct: 194 LYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSG-----ALYT 248
Query: 229 VXXXXXXXXXXXSRTDEKHPRLIEQFQLLNLQPXXXXXXXXXXXXXGQDGRVCTWGWGRY 288
D P +E L N DG++ WGW ++
Sbjct: 249 YGWSKYGQLGHGDLEDHLIPHKLE--ALSNSFISQISGGWRHTMALTSDGKLYGWGWNKF 306
Query: 289 GCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLG 344
G +G GN + P V+ +D K + V+ G T V+E +V+++G G + LG
Sbjct: 307 GQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLG 362
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 119/296 (40%), Gaps = 9/296 (3%)
Query: 50 AGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXXXXXXXXXXTML 109
AG HS+A+ S +V S+G GQLGHG E+ P + +L T+
Sbjct: 23 AGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVA 82
Query: 110 ISDAG-QVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREG 168
S +G +VY++G FG +G + L T P +++L I + Q A G+ ++ EG
Sbjct: 83 YSQSGMEVYSWGWGDFGRLGHG-NSSDLFT-PLPIKALHGIRIKQIACGDSHCLAVTMEG 140
Query: 169 RVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIXXXXXXXXXXXXQPSGMAVYS 228
V ++ + +LG + + P + E I + + +Y
Sbjct: 141 EVQSWGRNQNGQLGLGDTEDSLVPQKIQ-AFEGIRIKMVAAGAEHTAAVTEDGD---LYG 196
Query: 229 VXXXXXXXXXXXSRTDEKHPRLIEQFQLLNLQPXXXXXXXXXXXXXGQDGRVCTWGWGRY 288
RTD P + + G + T+GW +Y
Sbjct: 197 WGWGRYGNLGLGDRTDRLVPERVTSTGGEKMS--MVACGWRHTISVSYSGALYTYGWSKY 254
Query: 289 GCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLG 344
G LGHG+ E +P ++AL++ ++ G T ++ DG +Y +G + +G
Sbjct: 255 GQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVG 310
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 74/161 (45%), Gaps = 3/161 (1%)
Query: 47 QAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXXXXXXXXXX 106
Q G H +AVT +G V S+G N +GQLG G TE+ P+ I++
Sbjct: 125 QIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEH 184
Query: 107 TMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSR 166
T +++ G +Y +G +G G + +LV P+ V S + A G T +S
Sbjct: 185 TAAVTEDGDLYGWGWGRYGNLGLGDRTDRLV--PERVTSTGGEKMSMVACGWRHTISVSY 242
Query: 167 EGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQI 207
G +YT+ W +LGH + + PH L L N + QI
Sbjct: 243 SGALYTYGWSKYGQLGHGDLEDHLIPHKLE-ALSNSFISQI 282
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%)
Query: 279 RVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCG 338
V +WGWG +G LGHGN P ++AL+ ++ +A GD V+ +G+V S+G
Sbjct: 89 EVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRN 148
Query: 339 ESASLGHNAIADGQV 353
++ LG D V
Sbjct: 149 QNGQLGLGDTEDSLV 163
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 280 VCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDG-DVYSFGCG 338
VC+WG G G LGHG+ E P + AL+ + + V G T S+ G +VYS+G G
Sbjct: 37 VCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWG 96
Query: 339 ESASLGHNAIAD 350
+ LGH +D
Sbjct: 97 DFGRLGHGNSSD 108
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 47 QAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSL 92
Q G H++AVT + V+++G ++GQLG G + + P+ I +L
Sbjct: 333 QVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 378
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2
Length = 389
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 118/288 (40%), Gaps = 8/288 (2%)
Query: 62 GVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXXXXXXXXXXTMLISDAGQVYAFGK 121
G +Y +G N GQLG + P P +L ++ G++YA G
Sbjct: 20 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGY 79
Query: 122 DSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAI--GNFFTAVLSREGRVYTFSWGNDA 179
+ G + GT+ V++P L+ES++++F+ + A+ G LS EG VY++ D
Sbjct: 80 GAGGRLG--IGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDG 137
Query: 180 RLGHHTEPNDVEPHPLLGTLENIPVVQIXXXXXXXXXXXXQPSGMAVYSVXXXXXXXXXX 239
+LGH P ++ +L I VV + +Y+
Sbjct: 138 KLGHGNRSPCDRPR-VIESLRGIEVVDVAAGGAHSACVTAAGD---LYTWGKGRYGRLGH 193
Query: 240 XSRTDEKHPRLIEQFQLLNLQPXXXXXXXXXXXXXGQDGRVCTWGWGRYGCLGHGNEECE 299
D+ P+L+E Q + D V +WG G YG LG G +
Sbjct: 194 SDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGC 253
Query: 300 SVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNA 347
VP + +L + + V G + +++ G VY++G G+ LGH +
Sbjct: 254 KVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGS 301
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 85/307 (27%), Positives = 129/307 (42%), Gaps = 11/307 (3%)
Query: 47 QAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXX--XXXXXXXXX 104
Q I G AVT+ G +Y+ G + G+LG G TE P + S+
Sbjct: 57 QLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGG 116
Query: 105 XXTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVL 164
+ +S G+VY++G+ G+ +G + P+++ESL+ I VV A G +A +
Sbjct: 117 KHCLALSSEGEVYSWGEAEDGKLGHGNR--SPCDRPRVIESLRGIEVVDVAAGGAHSACV 174
Query: 165 SREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIXXXXXXXXXXXXQPSGM 224
+ G +YT+ G RLGH + ++P L+ L+ VV I
Sbjct: 175 TAAGDLYTWGKGRYGRLGHSDSEDQLKP-KLVEALQGHRVVDIACGSGDAQTLCLTDDDT 233
Query: 225 AVYSVXXXXXXXXXXXSRTDEKHPRLIEQFQLLNLQPXXXXXXXXXXXXXGQDGRVCTWG 284
V+S K P I+ L + + G V TWG
Sbjct: 234 -VWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALT--KSGAVYTWG 290
Query: 285 WGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLG 344
G Y LGHG+++ P+ VQ L K I +ATG +EDG+VY++G + LG
Sbjct: 291 KGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLG 350
Query: 345 H---NAI 348
NAI
Sbjct: 351 DGTTNAI 357
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 112/280 (40%), Gaps = 10/280 (3%)
Query: 50 AGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXXXXXXXXXXTML 109
+G H +A++S+G VYS+G G+LGHG RPR I SL +
Sbjct: 114 SGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSAC 173
Query: 110 ISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIG--NFFTAVLSRE 167
++ AG +Y +GK +G + +L P+LVE+L+ VV A G + T L+ +
Sbjct: 174 VTAAGDLYTWGKGRYGRLGHSDSEDQL--KPKLVEALQGHRVVDIACGSGDAQTLCLTDD 231
Query: 168 GRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIXXXXXXXXXXXXQPSGMAVY 227
V+++ G+ +LG P + +L + VV++ AVY
Sbjct: 232 DTVWSWGDGDYGKLGRGGSDGCKVPMKI-DSLTGLGVVKVECGSQFSVALTKSG---AVY 287
Query: 228 SVXXXXXXXXXXXSRTDEKHPRLIEQFQLLNLQPXXXXXXXXXXXXXGQDGRVCTWGWGR 287
+ S + PR ++ Q + +DG V TWG
Sbjct: 288 TWGKGDYHRLGHGSDDHVRRPRQVQGLQ--GKKVIAIATGSLHCVCCTEDGEVYTWGDND 345
Query: 288 YGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVS 327
G LG G P++V AL K VA G T S
Sbjct: 346 EGQLGDGTTNAIQRPRLVAALQGKKVNRVACGSAHTLAWS 385
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 49/103 (47%)
Query: 248 PRLIEQFQLLNLQPXXXXXXXXXXXXXGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQA 307
P L+E Q + ++ +G V +WG G LGHGN P+V+++
Sbjct: 96 PTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIES 155
Query: 308 LNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIAD 350
L ++ + VA G + V+ GD+Y++G G LGH+ D
Sbjct: 156 LRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSED 198
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance
Protein Uvr8
Length = 372
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 72/296 (24%), Positives = 123/296 (41%), Gaps = 11/296 (3%)
Query: 51 GPGHSIAVTSKGV-VYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXXXXXXXXXXTML 109
G H++A + G VYS+G G+LGHG + + + P PI++L +
Sbjct: 66 GADHTVAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLA 125
Query: 110 ISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGR 169
++ G+V ++G++ G+ G LV PQ +++ + I + A G TA ++ +G
Sbjct: 126 VTXEGEVQSWGRNQNGQLGLGDTEDSLV--PQKIQAFEGIRIKXVAAGAEHTAAVTEDGD 183
Query: 170 VYTFSWGNDARLGHHTEPNDVEPHPLLGT-LENIPVVQIXXXXXXXXXXXXQPSGMAVYS 228
+Y + WG LG + + P + T E V A+Y+
Sbjct: 184 LYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKXSXVACGWRHTISVSYSG-----ALYT 238
Query: 229 VXXXXXXXXXXXSRTDEKHPRLIEQFQLLNLQPXXXXXXXXXXXXXGQDGRVCTWGWGRY 288
D P +E L N DG++ WGW ++
Sbjct: 239 YGWSKYGQLGHGDLEDHLIPHKLE--ALSNSFISQISGGARHTXALTSDGKLYGWGWNKF 296
Query: 289 GCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLG 344
G +G GN + P V+ +D K + V+ G T V+E +V+++G G + LG
Sbjct: 297 GQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLG 352
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 120/296 (40%), Gaps = 9/296 (3%)
Query: 50 AGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXXXXXXXXXXTML 109
AG HS+A+ S +V S+G GQLGHG E+ P + +L T+
Sbjct: 13 AGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVA 72
Query: 110 ISDAG-QVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREG 168
S +G +VY++G FG +G + L T P +++L I + Q A G+ ++ EG
Sbjct: 73 YSQSGXEVYSWGWGDFGRLGHG-NSSDLFT-PLPIKALHGIRIKQIACGDSHCLAVTXEG 130
Query: 169 RVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIXXXXXXXXXXXXQPSGMAVYS 228
V ++ + +LG + + P + E I + + +Y
Sbjct: 131 EVQSWGRNQNGQLGLGDTEDSLVPQKIQ-AFEGIRIKXVAAGAEHTAAVTEDGD---LYG 186
Query: 229 VXXXXXXXXXXXSRTDEKHPRLIEQFQLLNLQPXXXXXXXXXXXXXGQDGRVCTWGWGRY 288
RTD P + + G + T+GW +Y
Sbjct: 187 WGWGRYGNLGLGDRTDRLVPERVTSTG--GEKXSXVACGWRHTISVSYSGALYTYGWSKY 244
Query: 289 GCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLG 344
G LGHG+ E +P ++AL++ ++ G T ++ DG +Y +G + +G
Sbjct: 245 GQLGHGDLEDHLIPHKLEALSNSFISQISGGARHTXALTSDGKLYGWGWNKFGQVG 300
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 74/161 (45%), Gaps = 3/161 (1%)
Query: 47 QAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXXXXXXXXXX 106
Q G H +AVT +G V S+G N +GQLG G TE+ P+ I++
Sbjct: 115 QIACGDSHCLAVTXEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKXVAAGAEH 174
Query: 107 TMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSR 166
T +++ G +Y +G +G G + +LV P+ V S A G T +S
Sbjct: 175 TAAVTEDGDLYGWGWGRYGNLGLGDRTDRLV--PERVTSTGGEKXSXVACGWRHTISVSY 232
Query: 167 EGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQI 207
G +YT+ W +LGH + + PH L L N + QI
Sbjct: 233 SGALYTYGWSKYGQLGHGDLEDHLIPHKLE-ALSNSFISQI 272
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%)
Query: 280 VCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGE 339
V +WGWG +G LGHGN P ++AL+ ++ +A GD V+ +G+V S+G +
Sbjct: 80 VYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTXEGEVQSWGRNQ 139
Query: 340 SASLGHNAIADGQV 353
+ LG D V
Sbjct: 140 NGQLGLGDTEDSLV 153
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 280 VCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDG-DVYSFGCG 338
VC+WG G G LGHG+ E P + AL+ + + V G T S+ G +VYS+G G
Sbjct: 27 VCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGXEVYSWGWG 86
Query: 339 ESASLGHNAIAD 350
+ LGH +D
Sbjct: 87 DFGRLGHGNSSD 98
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 47 QAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSL 92
Q G H++AVT + V+++G ++GQLG G + + P+ I +L
Sbjct: 323 QVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 368
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|B Chain B, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|C Chain C, Regulator Of Chromosome Condensation (Rcc1) Of Human
Length = 413
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 65/142 (45%), Gaps = 5/142 (3%)
Query: 47 QAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXXXXXXXXXX 106
QA AG H++ ++ G VYSFG N G LG T+ E P +
Sbjct: 63 QAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSH 122
Query: 107 TMLISDAGQVYAFGKDSFGEAEYGVQG--TKLVTSPQLVESLKNIFVVQAAIGNFFTAVL 164
T ++D G+V+ +G SF + GV G + S V+ ++ VV+ A GN +L
Sbjct: 123 TAALTDDGRVFLWG--SFRD-NNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVML 179
Query: 165 SREGRVYTFSWGNDARLGHHTE 186
+ +G +YT G +LG E
Sbjct: 180 TADGDLYTLGCGEQGQLGRVPE 201
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 75/160 (46%), Gaps = 15/160 (9%)
Query: 54 HSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXXXXXXXXXXTMLISDA 113
H T G+V + G GQLG G E R +P T+ +S +
Sbjct: 19 HRSHSTEPGLVLTLGQGDVGQLGLGENVME-RKKPALVSIPEDVVQAEAGGMHTVCLSKS 77
Query: 114 GQVYAFGKDSFGE--AEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVY 171
GQVY+FG + G + V+G+++V P VE + VVQ + G+ TA L+ +GRV
Sbjct: 78 GQVYSFGCNDEGALGRDTSVEGSEMV--PGKVELQEK--VVQVSAGDSHTAALTDDGRV- 132
Query: 172 TFSWG----NDARLGHHTEPNDVEPHPLLGTLENIPVVQI 207
F WG N+ +G EP P+ L ++PVV++
Sbjct: 133 -FLWGSFRDNNGVIG-LLEPMKKSMVPVQVQL-DVPVVKV 169
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 74/163 (45%), Gaps = 6/163 (3%)
Query: 48 AIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXX--XXXXXXX 105
A G + A++ +G VY FG ++ QLG TE + P+ + S
Sbjct: 237 AFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQH 296
Query: 106 XTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLS 165
T+ + G+ Y+ G+ +G G +G + + P L+ L + V A G ++
Sbjct: 297 HTVCMDSEGKAYSLGRAEYGRLGLG-EGAEEKSIPTLISRLPAVSSV--ACGASVGYAVT 353
Query: 166 REGRVYTFSWGNDARLGHHTEPNDVEPHPLLGT-LENIPVVQI 207
++GRV+ + G + +LG + + P ++G LEN V+ +
Sbjct: 354 KDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSV 396
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 277 DGRVCTWGWGR--YGCLGHGNEECES-VPKVVQALNDVKAIHVATGDYTTFVVSEDGDVY 333
DGRV WG R G +G +S VP VQ DV + VA+G+ +++ DGD+Y
Sbjct: 129 DGRVFLWGSFRDNNGVIGLLEPMKKSMVP--VQVQLDVPVVKVASGNDHLVMLTADGDLY 186
Query: 334 SFGCGESASLG 344
+ GCGE LG
Sbjct: 187 TLGCGEQGQLG 197
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 276 QDGRVCTWGWGRYGCLGHGNEECE-SVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYS 334
+ G V T G G G LG G E P +V DV + G T +S+ G VYS
Sbjct: 25 EPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDV--VQAEAGGMHTVCLSKSGQVYS 82
Query: 335 FGCGESASLGHNAIADG 351
FGC + +LG + +G
Sbjct: 83 FGCNDEGALGRDTSVEG 99
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 277 DGRVCTWGWGRYGCLGHGN-EECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSF 335
+G+ + G YG LG G E +S+P ++ L V + VA G + V++DG V+++
Sbjct: 304 EGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSS--VACGASVGYAVTKDGRVFAW 361
Query: 336 GCGESASLG 344
G G + LG
Sbjct: 362 GMGTNYQLG 370
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 83/250 (33%), Gaps = 24/250 (9%)
Query: 111 SDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRV 170
++ G V G+ G+ G + P LV ++ VVQA G T LS+ G+V
Sbjct: 24 TEPGLVLTLGQGDVGQLGLG-ENVMERKKPALVSIPED--VVQAEAGGMHTVCLSKSGQV 80
Query: 171 YTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIXXXXXXXXXXXXQPSGMAVYSVX 230
Y+F ++ LG T E P L+ VVQ+ S
Sbjct: 81 YSFGCNDEGALGRDTSVEGSEMVPGKVELQE-KVVQVSAGDSHTAALTDDGRVFLWGSFR 139
Query: 231 XXXXXXXXXXSRTDEKHPRLIEQFQLLNLQPXXXXXXXXXXXXXGQDGRVCTWGWGRYGC 290
P ++ L++ DG + T G G G
Sbjct: 140 DNNGVIGLLEPMKKSMVPVQVQ----LDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQ 195
Query: 291 LGH---------GNEECES--VPKVVQALNDVKAIHVA-----TGDYTTFVVSEDGDVYS 334
LG G + E VPK V + HV G Y TF +S +G VY
Sbjct: 196 LGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYG 255
Query: 335 FGCGESASLG 344
FG LG
Sbjct: 256 FGLSNYHQLG 265
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex
pdb|1I2M|D Chain D, Ran-Rcc1-So4 Complex
Length = 402
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 65/142 (45%), Gaps = 5/142 (3%)
Query: 47 QAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXXXXXXXXXX 106
QA AG H++ ++ G VYSFG N G LG T+ E P +
Sbjct: 52 QAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSH 111
Query: 107 TMLISDAGQVYAFGKDSFGEAEYGVQG--TKLVTSPQLVESLKNIFVVQAAIGNFFTAVL 164
T ++D G+V+ +G SF + GV G + S V+ ++ VV+ A GN +L
Sbjct: 112 TAALTDDGRVFLWG--SFRDNN-GVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVML 168
Query: 165 SREGRVYTFSWGNDARLGHHTE 186
+ +G +YT G +LG E
Sbjct: 169 TADGDLYTLGCGEQGQLGRVPE 190
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 75/160 (46%), Gaps = 15/160 (9%)
Query: 54 HSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXXXXXXXXXXTMLISDA 113
H T G+V + G GQLG G E R +P T+ +S +
Sbjct: 8 HRSHSTEPGLVLTLGQGDVGQLGLGENVME-RKKPALVSIPEDVVQAEAGGMHTVCLSKS 66
Query: 114 GQVYAFGKDSFGE--AEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVY 171
GQVY+FG + G + V+G+++V P VE + VVQ + G+ TA L+ +GRV
Sbjct: 67 GQVYSFGCNDEGALGRDTSVEGSEMV--PGKVELQEK--VVQVSAGDSHTAALTDDGRV- 121
Query: 172 TFSWG----NDARLGHHTEPNDVEPHPLLGTLENIPVVQI 207
F WG N+ +G EP P+ L ++PVV++
Sbjct: 122 -FLWGSFRDNNGVIG-LLEPMKKSMVPVQVQL-DVPVVKV 158
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 74/163 (45%), Gaps = 6/163 (3%)
Query: 48 AIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXX--XXXXXXX 105
A G + A++ +G VY FG ++ QLG TE + P+ + S
Sbjct: 226 AFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQH 285
Query: 106 XTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLS 165
T+ + G+ Y+ G+ +G G +G + + P L+ L + V A G ++
Sbjct: 286 HTVCMDSEGKAYSLGRAEYGRLGLG-EGAEEKSIPTLISRLPAVSSV--ACGASVGYAVT 342
Query: 166 REGRVYTFSWGNDARLGHHTEPNDVEPHPLLGT-LENIPVVQI 207
++GRV+ + G + +LG + + P ++G LEN V+ +
Sbjct: 343 KDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSV 385
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 277 DGRVCTWGWGR--YGCLGHGNEECES-VPKVVQALNDVKAIHVATGDYTTFVVSEDGDVY 333
DGRV WG R G +G +S VP VQ DV + VA+G+ +++ DGD+Y
Sbjct: 118 DGRVFLWGSFRDNNGVIGLLEPMKKSMVP--VQVQLDVPVVKVASGNDHLVMLTADGDLY 175
Query: 334 SFGCGESASLG 344
+ GCGE LG
Sbjct: 176 TLGCGEQGQLG 186
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 276 QDGRVCTWGWGRYGCLGHGNEECE-SVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYS 334
+ G V T G G G LG G E P +V DV + G T +S+ G VYS
Sbjct: 14 EPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDV--VQAEAGGMHTVCLSKSGQVYS 71
Query: 335 FGCGESASLGHNAIADG 351
FGC + +LG + +G
Sbjct: 72 FGCNDEGALGRDTSVEG 88
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 277 DGRVCTWGWGRYGCLGHGN-EECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSF 335
+G+ + G YG LG G E +S+P ++ L V + VA G + V++DG V+++
Sbjct: 293 EGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSS--VACGASVGYAVTKDGRVFAW 350
Query: 336 GCGESASLG 344
G G + LG
Sbjct: 351 GMGTNYQLG 359
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 83/250 (33%), Gaps = 24/250 (9%)
Query: 111 SDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRV 170
++ G V G+ G+ G + P LV ++ VVQA G T LS+ G+V
Sbjct: 13 TEPGLVLTLGQGDVGQLGLG-ENVMERKKPALVSIPED--VVQAEAGGMHTVCLSKSGQV 69
Query: 171 YTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIXXXXXXXXXXXXQPSGMAVYSVX 230
Y+F ++ LG T E P L+ VVQ+ S
Sbjct: 70 YSFGCNDEGALGRDTSVEGSEMVPGKVELQE-KVVQVSAGDSHTAALTDDGRVFLWGSFR 128
Query: 231 XXXXXXXXXXSRTDEKHPRLIEQFQLLNLQPXXXXXXXXXXXXXGQDGRVCTWGWGRYGC 290
P ++ L++ DG + T G G G
Sbjct: 129 DNNGVIGLLEPMKKSMVPVQVQ----LDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQ 184
Query: 291 LGH---------GNEECES--VPKVVQALNDVKAIHVA-----TGDYTTFVVSEDGDVYS 334
LG G + E VPK V + HV G Y TF +S +G VY
Sbjct: 185 LGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYG 244
Query: 335 FGCGESASLG 344
FG LG
Sbjct: 245 FGLSNYHQLG 254
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|L Chain L, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
Length = 423
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 8/140 (5%)
Query: 50 AGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRP-IRSLXXXXXXXXXXXXXXTM 108
AG H++ +T G +YSFG N G LG T+E+ +P + L
Sbjct: 82 AGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSAC 141
Query: 109 LISDAGQVYAFG--KDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSR 166
L+ D G+V+A+G +DS G + G K +P ++ ++ A G +L+
Sbjct: 142 LLED-GRVFAWGSFRDSHGNMGLTIDGNK--RTP--IDLMEGTVCCSIASGADHLVILTT 196
Query: 167 EGRVYTFSWGNDARLGHHTE 186
G+V+T +LG +E
Sbjct: 197 AGKVFTVGCAEQGQLGRLSE 216
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 278 GRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGC 337
G V G G G LG G + E ++ A+ ++ G V+++ GD+YSFGC
Sbjct: 43 GNVLVCGNGDVGQLGLGEDILER-KRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFGC 101
Query: 338 GESASLGHNAIADG 351
+ +LG + DG
Sbjct: 102 NDEGALGRDTSEDG 115
Score = 34.7 bits (78), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 58/130 (44%), Gaps = 3/130 (2%)
Query: 63 VVYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXXXXXXXXXXTMLISDAGQVYAFGKD 122
V+++ G N+ QL H T +E+ PI++ +L +D + G+
Sbjct: 263 VIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQHHTVILTTDL-KCSVVGRP 321
Query: 123 SFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLG 182
+G G +V P +V+ L +V G + ++ +G++Y++ G + +LG
Sbjct: 322 EYGRLGLG-DVKDVVEKPTIVKKLTE-KIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLG 379
Query: 183 HHTEPNDVEP 192
+++EP
Sbjct: 380 VGDGDDELEP 389
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 276 QDGRVCTWGWGR--YGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVY 333
+DGRV WG R +G +G + + P + + +A+G +++ G V+
Sbjct: 144 EDGRVFAWGSFRDSHGNMGLTIDGNKRTP--IDLMEGTVCCSIASGADHLVILTTAGKVF 201
Query: 334 SFGCGESASLGH 345
+ GC E LG
Sbjct: 202 TVGCAEQGQLGR 213
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 55 SIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRP 86
S AVT G +YS+GS + QLG G ++E P
Sbjct: 358 SYAVTIDGKLYSWGSGVNNQLGVGDGDDELEP 389
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces
Cerevisiae And Its Binding Properties To Gsp1p And
Histones
Length = 473
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 88/215 (40%), Gaps = 36/215 (16%)
Query: 140 PQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWG----NDARLGHHTEPNDVEPHPL 195
P L E K VVQ A + + L G VY +WG N+ LG + + ++ P
Sbjct: 142 PPLAEGHK---VVQLAATDNMSCALFSNGEVY--AWGTFRCNEGILGFYQDKIKIQKTPW 196
Query: 196 -LGTLENIPVVQIXXXXXXXXXXXXQPSGMAVYSVXXXXXXXXXXXSRTDEKHPRLIEQF 254
+ T +VQ+ P + + + ++ +++E+F
Sbjct: 197 KVPTFSKYNIVQLA------------PGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERF 244
Query: 255 QLLNLQPXXXXXXXXXXXXXGQ--------DGRVCTWGWGRYGCLGHGNEECE-----SV 301
+L L P G+ D ++ +WG ++G G +E+ E +
Sbjct: 245 RLKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGV-SEDVEDGALVTK 303
Query: 302 PKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFG 336
PK + ++V +A G++ + ++S+DGD+YS G
Sbjct: 304 PKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCG 338
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 56/132 (42%), Gaps = 9/132 (6%)
Query: 47 QAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTE----EEWRPRPIRSLXXXXXXXXXX 102
Q G H + + +G+V+++G+ QLG E + PRP
Sbjct: 208 QLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRP---FGLRHVKYIAS 264
Query: 103 XXXXTMLISDAGQVYAFGKDSFGE--AEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFF 160
++ ++ ++G + FG+ V+ LVT P+ + N+ + A G
Sbjct: 265 GENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHH 324
Query: 161 TAVLSREGRVYT 172
+ +LS++G +Y+
Sbjct: 325 SLILSQDGDLYS 336
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 280 VCTWGWGRYGCLGHG----NEECESVPKVVQAL--NDVKAIHVATGDYTTFVVSEDGDVY 333
+ WG G LG G N+E + P++ L ++ K I A G T + E+ +V+
Sbjct: 31 IFCWGTGSMCELGLGPLAKNKEVKR-PRLNPFLPRDEAKIISFAVGGMHTLALDEESNVW 89
Query: 334 SFGCGESASLGHN 346
S+GC + +LG +
Sbjct: 90 SWGCNDVGALGRD 102
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 114 GQVYAFGKDSFGEAEYGV--QGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVY 171
G+VYA+G E G K+ +P V + +VQ A G L EG V
Sbjct: 167 GEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMV- 225
Query: 172 TFSWGN 177
F+WGN
Sbjct: 226 -FAWGN 230
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 293 HGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIAD 350
HG + +VP + N K VA G + + V+++G YS+G GE+ ++G D
Sbjct: 361 HG--KARAVPLPTKLNNVPKFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFED 416
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 50 AGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEE 83
AG HS+AV G+ YS+G + +G G E++
Sbjct: 384 AGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDD 417
>pdb|2WSK|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Glgx From
Escherichia Coli K-12
Length = 657
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 322 TTFVVSEDGDVYSF-GCGESASLGHNAIAD 350
+ + + EDGD +++ GCG + +L H A+ D
Sbjct: 286 SYYWIREDGDYHNWTGCGNTLNLSHPAVVD 315
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,312,528
Number of Sequences: 62578
Number of extensions: 369669
Number of successful extensions: 857
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 711
Number of HSP's gapped (non-prelim): 104
length of query: 380
length of database: 14,973,337
effective HSP length: 101
effective length of query: 279
effective length of database: 8,652,959
effective search space: 2414175561
effective search space used: 2414175561
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)