Query 016940
Match_columns 380
No_of_seqs 177 out of 1824
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 04:11:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016940.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016940hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5184 ATS1 Alpha-tubulin sup 100.0 4.7E-46 1E-50 344.3 25.3 307 43-359 104-440 (476)
2 COG5184 ATS1 Alpha-tubulin sup 100.0 1.2E-43 2.6E-48 328.3 23.2 301 53-359 59-388 (476)
3 KOG1427 Uncharacterized conser 100.0 6.2E-40 1.3E-44 285.6 16.4 310 44-366 57-382 (443)
4 KOG1427 Uncharacterized conser 100.0 3.3E-37 7.1E-42 268.6 16.3 271 62-340 20-311 (443)
5 KOG0783 Uncharacterized conser 99.9 2.5E-27 5.3E-32 230.0 14.3 272 56-339 136-417 (1267)
6 KOG1428 Inhibitor of type V ad 99.9 3.3E-25 7.1E-30 222.8 20.2 293 38-351 520-859 (3738)
7 KOG0783 Uncharacterized conser 99.9 7.8E-25 1.7E-29 212.8 15.7 267 44-330 178-450 (1267)
8 KOG1428 Inhibitor of type V ad 99.8 1.4E-19 3E-24 182.9 19.0 271 41-325 567-891 (3738)
9 PF00415 RCC1: Regulator of ch 99.3 4E-12 8.7E-17 85.4 4.8 50 277-326 1-51 (51)
10 PF00415 RCC1: Regulator of ch 99.3 7.6E-12 1.6E-16 84.0 4.6 50 61-110 1-51 (51)
11 PF13540 RCC1_2: Regulator of 99.1 6.7E-11 1.5E-15 69.4 4.4 30 313-342 1-30 (30)
12 PF13540 RCC1_2: Regulator of 99.1 8.9E-11 1.9E-15 68.9 3.8 30 261-290 1-30 (30)
13 KOG0941 E3 ubiquitin protein l 99.1 3.1E-12 6.6E-17 126.8 -6.6 188 41-281 12-200 (850)
14 KOG0941 E3 ubiquitin protein l 98.9 1.9E-11 4.1E-16 121.3 -7.9 151 140-341 5-156 (850)
15 PF11725 AvrE: Pathogenicity f 94.5 1.5 3.2E-05 48.8 15.9 56 267-336 712-770 (1774)
16 KOG0315 G-protein beta subunit 93.4 5.5 0.00012 35.5 18.1 182 16-231 9-196 (311)
17 KOG3669 Uncharacterized conser 93.3 6.3 0.00014 39.2 16.2 108 102-229 190-299 (705)
18 KOG0943 Predicted ubiquitin-pr 92.8 0.013 2.9E-07 61.5 -2.6 134 148-289 373-508 (3015)
19 KOG0315 G-protein beta subunit 92.4 7.8 0.00017 34.6 18.6 72 202-287 125-198 (311)
20 KOG3669 Uncharacterized conser 92.2 10 0.00022 37.9 16.0 108 156-282 190-298 (705)
21 KOG0278 Serine/threonine kinas 92.0 7.6 0.00017 34.7 13.6 197 49-287 47-255 (334)
22 KOG1408 WD40 repeat protein [F 91.9 5.7 0.00012 40.6 14.1 102 48-173 138-246 (1080)
23 KOG0943 Predicted ubiquitin-pr 90.2 0.039 8.4E-07 58.2 -2.4 134 94-236 373-509 (3015)
24 KOG0291 WD40-repeat-containing 88.0 36 0.00078 35.3 21.0 113 161-290 312-426 (893)
25 KOG0646 WD40 repeat protein [G 87.9 21 0.00045 34.6 13.9 154 151-335 84-244 (476)
26 PF11725 AvrE: Pathogenicity f 86.7 20 0.00044 40.4 14.7 68 257-330 742-815 (1774)
27 KOG0649 WD40 repeat protein [G 85.6 26 0.00055 31.3 12.2 38 145-183 59-97 (325)
28 KOG0291 WD40-repeat-containing 85.2 51 0.0011 34.3 22.6 250 45-345 300-557 (893)
29 PF07569 Hira: TUP1-like enhan 83.8 6.5 0.00014 34.7 8.2 26 149-174 13-38 (219)
30 PF07569 Hira: TUP1-like enhan 82.7 8.9 0.00019 33.9 8.6 31 257-287 11-41 (219)
31 KOG4441 Proteins containing BT 79.9 25 0.00054 36.0 11.8 22 264-285 509-530 (571)
32 KOG0646 WD40 repeat protein [G 79.6 64 0.0014 31.4 18.6 236 96-374 83-337 (476)
33 PHA03098 kelch-like protein; P 78.9 62 0.0013 32.6 14.4 17 106-123 336-352 (534)
34 KOG1274 WD40 repeat protein [G 78.9 77 0.0017 33.6 14.6 68 157-230 14-84 (933)
35 KOG2111 Uncharacterized conser 78.5 54 0.0012 30.4 12.0 161 40-231 92-255 (346)
36 PLN02153 epithiospecifier prot 78.2 61 0.0013 30.5 20.2 16 212-231 130-145 (341)
37 PHA02713 hypothetical protein; 78.1 60 0.0013 33.1 13.9 14 273-286 459-472 (557)
38 PF04841 Vps16_N: Vps16, N-ter 77.4 74 0.0016 31.0 19.5 69 95-173 81-152 (410)
39 KOG0293 WD40 repeat-containing 75.4 81 0.0017 30.5 19.1 77 199-287 393-471 (519)
40 smart00706 TECPR Beta propelle 75.2 5.2 0.00011 23.7 3.3 25 43-67 8-33 (35)
41 PLN02153 epithiospecifier prot 75.2 74 0.0016 29.9 17.5 18 105-123 130-147 (341)
42 KOG0289 mRNA splicing factor [ 74.5 87 0.0019 30.4 18.2 68 159-230 350-417 (506)
43 KOG0649 WD40 repeat protein [G 74.2 66 0.0014 28.8 12.8 82 200-285 61-143 (325)
44 PRK13979 DNA topoisomerase IV 74.1 1.4E+02 0.0031 32.6 17.7 169 50-239 514-696 (957)
45 KOG4441 Proteins containing BT 73.7 1E+02 0.0022 31.6 14.1 57 273-337 471-530 (571)
46 COG4257 Vgb Streptogramin lyas 73.5 30 0.00065 31.6 8.9 138 52-229 63-205 (353)
47 cd00200 WD40 WD40 domain, foun 70.8 69 0.0015 27.6 27.6 181 53-287 22-208 (289)
48 smart00706 TECPR Beta propelle 68.6 10 0.00022 22.4 3.6 24 149-172 8-32 (35)
49 PF04762 IKI3: IKI3 family; I 64.8 2.2E+02 0.0048 31.2 18.2 30 148-177 426-457 (928)
50 TIGR01063 gyrA DNA gyrase, A s 61.1 2.4E+02 0.0051 30.3 22.7 217 49-288 543-771 (800)
51 COG4257 Vgb Streptogramin lyas 60.5 1.4E+02 0.003 27.5 14.5 107 44-173 94-205 (353)
52 PRK05560 DNA gyrase subunit A; 60.5 2.4E+02 0.0053 30.3 21.0 268 51-346 497-780 (805)
53 TIGR01063 gyrA DNA gyrase, A s 59.1 2.6E+02 0.0056 30.1 21.0 265 51-346 495-777 (800)
54 PRK05560 DNA gyrase subunit A; 58.3 2.7E+02 0.0058 30.0 24.0 217 49-289 545-775 (805)
55 cd00200 WD40 WD40 domain, foun 56.9 1.3E+02 0.0028 25.9 25.9 27 96-122 95-123 (289)
56 KOG1900 Nuclear pore complex, 56.4 3.3E+02 0.0072 30.5 17.2 174 107-290 92-276 (1311)
57 KOG1034 Transcriptional repres 56.3 1.4E+02 0.0031 28.0 10.0 59 271-337 322-382 (385)
58 PHA02713 hypothetical protein; 55.8 81 0.0018 32.1 9.6 24 47-70 337-360 (557)
59 PF12341 DUF3639: Protein of u 54.2 36 0.00077 19.2 3.7 24 95-118 2-25 (27)
60 PF04841 Vps16_N: Vps16, N-ter 53.1 2.3E+02 0.0049 27.6 21.3 63 52-122 91-155 (410)
61 COG5308 NUP170 Nuclear pore co 52.8 2.7E+02 0.0058 30.0 12.3 62 56-121 96-159 (1263)
62 TIGR03300 assembly_YfgL outer 52.8 1.7E+02 0.0037 27.7 11.0 18 104-121 320-337 (377)
63 TIGR03548 mutarot_permut cycli 52.2 1.7E+02 0.0038 27.1 10.6 18 322-339 216-233 (323)
64 KOG2444 WD40 repeat protein [G 50.8 95 0.0021 27.5 7.7 71 157-239 69-139 (238)
65 PF06739 SBBP: Beta-propeller 50.4 20 0.00043 21.8 2.6 18 270-287 16-33 (38)
66 KOG2444 WD40 repeat protein [G 48.9 48 0.001 29.3 5.6 98 263-370 65-165 (238)
67 KOG1900 Nuclear pore complex, 48.7 4.4E+02 0.0095 29.7 20.5 217 56-285 93-339 (1311)
68 KOG1034 Transcriptional repres 47.1 46 0.001 31.0 5.4 58 56-121 323-382 (385)
69 KOG1587 Cytoplasmic dynein int 45.9 3.5E+02 0.0075 27.7 17.0 115 153-287 355-473 (555)
70 PRK11138 outer membrane biogen 44.9 2.3E+02 0.005 27.1 10.5 16 158-173 376-391 (394)
71 PHA03098 kelch-like protein; P 42.7 3.7E+02 0.0079 27.0 17.6 17 322-339 481-497 (534)
72 PF02239 Cytochrom_D1: Cytochr 42.2 1.4E+02 0.0031 28.6 8.4 118 43-173 27-155 (369)
73 KOG2106 Uncharacterized conser 41.7 3.7E+02 0.0081 26.9 15.3 60 152-231 215-274 (626)
74 KOG0307 Vesicle coat complex C 41.3 1.3E+02 0.0027 32.8 8.3 37 312-348 255-294 (1049)
75 KOG4693 Uncharacterized conser 41.2 2.8E+02 0.0062 25.3 9.3 61 269-338 81-148 (392)
76 KOG0293 WD40 repeat-containing 40.7 3.5E+02 0.0077 26.3 14.7 72 148-231 395-469 (519)
77 TIGR03548 mutarot_permut cycli 40.3 3.1E+02 0.0066 25.4 10.7 18 105-123 116-133 (323)
78 PRK14131 N-acetylneuraminic ac 39.2 3.5E+02 0.0076 25.8 12.5 17 270-286 214-230 (376)
79 PF01436 NHL: NHL repeat; Int 37.1 64 0.0014 17.9 3.2 18 54-71 5-22 (28)
80 TIGR01062 parC_Gneg DNA topois 36.3 5.5E+02 0.012 27.3 13.7 122 49-183 533-661 (735)
81 KOG1240 Protein kinase contain 34.6 7.2E+02 0.016 28.0 13.0 122 203-336 1050-1179(1431)
82 PHA02790 Kelch-like protein; P 33.0 3E+02 0.0065 27.4 9.4 17 54-70 311-327 (480)
83 PF13418 Kelch_4: Galactose ox 32.8 38 0.00083 21.4 2.0 18 268-285 3-20 (49)
84 PF03785 Peptidase_C25_C: Pept 31.8 97 0.0021 22.5 4.0 41 138-180 7-48 (81)
85 KOG0268 Sof1-like rRNA process 31.6 4.7E+02 0.01 25.0 10.9 67 313-379 318-388 (433)
86 KOG1539 WD repeat protein [Gen 31.1 6.8E+02 0.015 26.8 20.5 68 42-123 76-143 (910)
87 PF02239 Cytochrom_D1: Cytochr 31.1 4.8E+02 0.01 25.0 14.4 72 96-182 28-103 (369)
88 PF04762 IKI3: IKI3 family; I 30.5 7.6E+02 0.017 27.1 20.1 28 42-69 426-455 (928)
89 TIGR01062 parC_Gneg DNA topois 29.1 7.3E+02 0.016 26.4 16.6 110 50-176 492-605 (735)
90 KOG1274 WD40 repeat protein [G 29.0 7.6E+02 0.017 26.6 21.2 70 51-122 14-86 (933)
91 PLN03215 ascorbic acid mannose 28.5 2.3E+02 0.005 27.3 7.2 62 44-120 161-225 (373)
92 PLN03215 ascorbic acid mannose 27.7 2.5E+02 0.0054 27.0 7.3 62 96-174 161-225 (373)
93 KOG1230 Protein containing rep 26.4 6.2E+02 0.013 24.8 9.4 20 320-339 233-252 (521)
94 KOG2106 Uncharacterized conser 24.9 7.2E+02 0.016 25.0 20.9 67 100-170 285-351 (626)
95 PLN02772 guanylate kinase 24.4 1.3E+02 0.0029 29.1 4.8 62 269-338 27-95 (398)
96 PF00400 WD40: WD domain, G-be 24.3 1.5E+02 0.0033 17.0 4.8 27 202-229 12-38 (39)
97 KOG3621 WD40 repeat-containing 23.8 8.5E+02 0.019 25.5 14.6 96 6-123 11-107 (726)
98 PF03785 Peptidase_C25_C: Pept 23.8 1.2E+02 0.0026 22.1 3.3 47 300-348 7-54 (81)
99 PF11399 DUF3192: Protein of u 22.8 65 0.0014 24.6 1.9 27 316-342 75-101 (102)
100 PF13938 DUF4213: Domain of un 22.1 1.2E+02 0.0027 22.1 3.4 23 146-168 9-31 (87)
101 PF10168 Nup88: Nuclear pore c 21.5 9.4E+02 0.02 25.5 10.7 84 200-285 83-178 (717)
102 PF07312 DUF1459: Protein of u 21.1 62 0.0014 23.3 1.4 12 331-342 57-69 (84)
103 KOG0318 WD40 repeat stress pro 20.3 9E+02 0.019 24.4 22.9 29 43-71 62-90 (603)
104 KOG4693 Uncharacterized conser 20.1 2.9E+02 0.0063 25.2 5.7 18 211-232 80-97 (392)
105 PF10168 Nup88: Nuclear pore c 20.1 1E+03 0.022 25.3 10.6 113 222-335 41-176 (717)
No 1
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=4.7e-46 Score=344.27 Aligned_cols=307 Identities=26% Similarity=0.399 Sum_probs=250.1
Q ss_pred eeceEEecCCCeEEEEecCCcEEEeeCCCCCCcCCCCC----------------CCccceeeccC----CCCCcEEEEEe
Q 016940 43 RENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTT----------------EEEWRPRPIRS----LQGIRIIQAAA 102 (380)
Q Consensus 43 ~~i~~i~~G~~~~~~l~~~G~v~~~G~n~~gqlG~~~~----------------~~~~~p~~v~~----~~~~~I~~V~~ 102 (380)
..|++++||.+|+++|+.||+||+||.|..|+||.-.. +....|..++. ....+|+++.|
T Consensus 104 ~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~c 183 (476)
T COG5184 104 ASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLAC 183 (476)
T ss_pred eeeEEeecCCceEEeecCCCCEEEeccCcccccccccccccccccccccccchhhcccCCceeeccccccCChheEEeec
Confidence 47889999999999999999999999999999998651 12456777775 22347999999
Q ss_pred CCCceEEEecCCcEEEeeCCCCCCCccCCCCce----eecCCeeecccCCccEEEEeeCCCeEEEEecCCcEEEEEeCCC
Q 016940 103 GAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTK----LVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGND 178 (380)
Q Consensus 103 g~~~~~~lt~~G~vy~~G~n~~gqlG~~~~~~~----~~~~p~~v~~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~ 178 (380)
|+.++++++++|+||+||.+..+.++.+..... ....|..+. ...|+++++|.+|.++|+++|++|.||.|..
T Consensus 184 g~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~---~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qk 260 (476)
T COG5184 184 GWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVP---KKAIVQLAAGADHLIALTNEGKVYGWGSNQK 260 (476)
T ss_pred CCceEEEEccCCcEEEecCccccccccccccccccceeeeeeeecC---chheeeeccCCceEEEEecCCcEEEecCCcc
Confidence 999999999999999999999988887743333 335555554 3569999999999999999999999999999
Q ss_pred CccCCCCCCCcccccccccccCCCCEEEEEecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCC----CCCCeeeeee
Q 016940 179 ARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTD----EKHPRLIEQF 254 (380)
Q Consensus 179 gqlg~~~~~~~~~p~~v~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~----~~~p~~~~~~ 254 (380)
||||.........+..+..++.-..|+.|+||.+|+++|.+ +| +||+||.|.++|++.++... ...|.....+
T Consensus 261 gqlG~~~~e~~~~~~lv~~~f~i~~i~~vacG~~h~~al~~--~G-~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~ 337 (476)
T COG5184 261 GQLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLALDE--DG-EIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLL 337 (476)
T ss_pred cccCCchhhhcccccccCChhhhhhhhhcccCcceEEEEcC--CC-eEEEeccchhcccccCcccccceeeccccccccC
Confidence 99999887766656555544444458899999999999999 99 99999999999999982211 1112221111
Q ss_pred ecCCCccEEEEccCceEEEEeCCCCEEEEeCCCCCCccCCC--CCCccccEEecccCCCcEEEEEecCCeEEEEeeCCCE
Q 016940 255 QLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGN--EECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDV 332 (380)
Q Consensus 255 ~~~~~~i~~i~~G~~h~~~lt~~g~vy~wG~n~~gqLG~~~--~~~~~~p~~i~~~~~~~i~~i~~G~~~t~~l~~~g~v 332 (380)
....|.++++|..|+++|..+|.||+||.+..+|||... +.....|.++.. ..++.+++||..|+++.+.+|++
T Consensus 338 --~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls~--~~~~~~v~~gt~~~~~~t~~gsv 413 (476)
T COG5184 338 --SGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSV--AIKLEQVACGTHHNIARTDDGSV 413 (476)
T ss_pred --CCceEEEEecCcceEEEEecCceEEEecCCccccccCcccceeecCCcccccc--ccceEEEEecCccceeeccCCce
Confidence 233478999999999999999999999999999999988 555555555532 34699999999999999999999
Q ss_pred EEEECCCCCCCCCCCCCCCCccchhhh
Q 016940 333 YSFGCGESASLGHNAIADGQVCSLLFL 359 (380)
Q Consensus 333 ~~wG~n~~gqlG~~~~~~~~~~~~~~~ 359 (380)
|+||+|++|+||.++.......+++..
T Consensus 414 y~wG~ge~gnlG~g~~~~~~~~pt~i~ 440 (476)
T COG5184 414 YSWGWGEHGNLGNGPKEADVLVPTLIR 440 (476)
T ss_pred EEecCchhhhccCCchhhhcccccccc
Confidence 999999999999999988876666555
No 2
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=1.2e-43 Score=328.31 Aligned_cols=301 Identities=27% Similarity=0.425 Sum_probs=243.0
Q ss_pred CeEEEEecCCcEEEeeCCCCCCcCCCCCCCc-cceeeccCC--CCCcEEEEEeCCCceEEEecCCcEEEeeCCCCCCCcc
Q 016940 53 GHSIAVTSKGVVYSFGSNSSGQLGHGTTEEE-WRPRPIRSL--QGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEY 129 (380)
Q Consensus 53 ~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~-~~p~~v~~~--~~~~I~~V~~g~~~~~~lt~~G~vy~~G~n~~gqlG~ 129 (380)
.|...++.-..||+||+|...+||++..... ..|+..+.. +...|++++||..|+++|++||+||+||.|..|+||.
T Consensus 59 ~~~~~~~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lgr 138 (476)
T COG5184 59 KHTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGR 138 (476)
T ss_pred cchhhhhheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCccccccc
Confidence 4455777888999999999999999987654 678887766 5568999999999999999999999999999999987
Q ss_pred CC--------------CCceeecCCeeecc----cCCccEEEEeeCCCeEEEEecCCcEEEEEeCCCCccCCCCCCCccc
Q 016940 130 GV--------------QGTKLVTSPQLVES----LKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVE 191 (380)
Q Consensus 130 ~~--------------~~~~~~~~p~~v~~----~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~ 191 (380)
.. .......+|..|+. ....+|++++||++++++|+++|+||.||.+..+.++.+...+...
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k 218 (476)
T COG5184 139 DIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQK 218 (476)
T ss_pred ccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCcccccccccccccccc
Confidence 64 12234667888865 2344799999999999999999999999999888888775433332
Q ss_pred ----ccccccccCCCCEEEEEecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEcc
Q 016940 192 ----PHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAG 267 (380)
Q Consensus 192 ----p~~v~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G 267 (380)
++++..+ ...|+++++|.+|.++|+. +| ++|.||+|..||||.........+..+..+-... .|.+|+||
T Consensus 219 ~~~~~~p~~v~--~~~i~qla~G~dh~i~lt~--~G-~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~-~i~~vacG 292 (476)
T COG5184 219 TSIQFTPLKVP--KKAIVQLAAGADHLIALTN--EG-KVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIR-NIKYVACG 292 (476)
T ss_pred ceeeeeeeecC--chheeeeccCCceEEEEec--CC-cEEEecCCcccccCCchhhhcccccccCChhhhh-hhhhcccC
Confidence 3333322 4569999999999999999 99 9999999999999998877766666654432221 36799999
Q ss_pred CceEEEEeCCCCEEEEeCCCCCCccCCCC----CCccccEEecccCCCcEEEEEecCCeEEEEeeCCCEEEEECCCCCCC
Q 016940 268 AWHAAVVGQDGRVCTWGWGRYGCLGHGNE----ECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASL 343 (380)
Q Consensus 268 ~~h~~~lt~~g~vy~wG~n~~gqLG~~~~----~~~~~p~~i~~~~~~~i~~i~~G~~~t~~l~~~g~v~~wG~n~~gql 343 (380)
.+|++||+++|++|+||.|.+||||.+.. .....|.....+++..|..|++|..|+++|..+|.+|+||.++.+||
T Consensus 293 ~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~ql 372 (476)
T COG5184 293 KDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQL 372 (476)
T ss_pred cceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCccccc
Confidence 99999999999999999999999999821 12344555555667789999999999999999999999999999999
Q ss_pred CCCCCCCCCccchhhh
Q 016940 344 GHNAIADGQVCSLLFL 359 (380)
Q Consensus 344 G~~~~~~~~~~~~~~~ 359 (380)
|..+......+++..+
T Consensus 373 g~~~~~~~~~~~~~~l 388 (476)
T COG5184 373 GIQEEITIDVSTPTKL 388 (476)
T ss_pred cCcccceeecCCcccc
Confidence 9998554444444344
No 3
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=6.2e-40 Score=285.60 Aligned_cols=310 Identities=28% Similarity=0.412 Sum_probs=257.4
Q ss_pred eceEEecCC--CeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeCCCceEEEecCCcEEEeeC
Q 016940 44 ENSQAIAGP--GHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGK 121 (380)
Q Consensus 44 ~i~~i~~G~--~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g~~~~~~lt~~G~vy~~G~ 121 (380)
+|+-|++|. .|+++++-+|++|.||.|..||||.++......|+.++.+...+|++.+||+.|+++||++|++|+||.
T Consensus 57 ~iR~VasG~~aaH~vli~megk~~~wGRNekGQLGhgD~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGe 136 (443)
T KOG1427|consen 57 NIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQLGHGDMKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGE 136 (443)
T ss_pred eEEEEecccchhhEEEEecccceeecccCccCccCccchhhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecc
Confidence 467777775 699999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCCCCccCCCCceeecCCeeecccCCccEEEEeeCCCeEEEEecCCcEEEEEeCCCCccCCCCCCCcc-----------
Q 016940 122 DSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDV----------- 190 (380)
Q Consensus 122 n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~----------- 190 (380)
|.+||||.+.... .+..|..+ ......|..|+||.++++.|+..+.+..+|.-.|||||+++....+
T Consensus 137 NK~GQlGlgn~~~-~v~s~~~~-~~~~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e 214 (443)
T KOG1427|consen 137 NKYGQLGLGNAKN-EVESTPLP-CVVSDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYE 214 (443)
T ss_pred ccccccccccccc-ccccCCCc-cccCccceeeccccceEEEeecccceeecCCccccccccCcchhhccccccceeeee
Confidence 9999999997433 23333333 2334569999999999999999999999999999999988753321
Q ss_pred ---cccccccccCCCCEEEEEecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEcc
Q 016940 191 ---EPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAG 267 (380)
Q Consensus 191 ---~p~~v~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G 267 (380)
.|.-+. ++...+|++++||.+|++++.+ ++ +||+||..-||+||.....+.-.|+.+..|+..+--..++.||
T Consensus 215 ~~pr~~~i~-~~dgvqiv~~acg~nhtvavd~--nk-rVysWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g 290 (443)
T KOG1427|consen 215 AQPRPKAIA-SLDGVQIVKVACGTNHTVAVDK--NK-RVYSWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILG 290 (443)
T ss_pred cCCCccccc-cccceeeEEEeccCcceeeecC--Cc-cEEEeccccccccccccchhhHHHHHHHHhcCCCCCCcceeee
Confidence 222333 3778889999999999999998 88 9999999999999999888889999998888776667799999
Q ss_pred CceEEEEeCCCCEEEEeCCCCCCccCCCCCCccccEEecccCCCcEEEEEecCCeEEEEeeCCCEEEEECCCCCCCCCCC
Q 016940 268 AWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNA 347 (380)
Q Consensus 268 ~~h~~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~t~~l~~~g~v~~wG~n~~gqlG~~~ 347 (380)
+..++++.+-|.||.||.+.. +.+...+|.++..++++.+..+.|+..|.++ ..|....+||...++.++-+.
T Consensus 291 ~t~Sl~v~e~G~Lf~~g~~k~------~ge~~mypkP~~dlsgwnl~~~~~~~~h~~v-~ad~s~i~wg~~~~g~~lggp 363 (443)
T KOG1427|consen 291 YTGSLNVAEGGQLFMWGKIKN------NGEDWMYPKPMMDLSGWNLRWMDSGSMHHFV-GADSSCISWGHAQYGELLGGP 363 (443)
T ss_pred cccceeecccceeEEeecccc------CcccccCCCchhhcCCccCCCcCccceeeee-cccccccccccccccccccCc
Confidence 999999999999999999873 3355778888888999999999999999765 477788999998888877666
Q ss_pred CCCCCccchhhhhhhhhee
Q 016940 348 IADGQVCSLLFLSIFQYLQ 366 (380)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~ 366 (380)
....-...+-.++..+...
T Consensus 364 ~~Qkss~~Pk~v~~l~~i~ 382 (443)
T KOG1427|consen 364 NGQKSSAAPKKVDMLEGIH 382 (443)
T ss_pred cccccccCccccchhccee
Confidence 5544433333333444333
No 4
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=3.3e-37 Score=268.61 Aligned_cols=271 Identities=28% Similarity=0.471 Sum_probs=225.4
Q ss_pred CcEEEeeCCCCCCcCCCC---CCCccceeeccCCCCCcEEEEEeC--CCceEEEecCCcEEEeeCCCCCCCccCCCCcee
Q 016940 62 GVVYSFGSNSSGQLGHGT---TEEEWRPRPIRSLQGIRIIQAAAG--AGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKL 136 (380)
Q Consensus 62 G~v~~~G~n~~gqlG~~~---~~~~~~p~~v~~~~~~~I~~V~~g--~~~~~~lt~~G~vy~~G~n~~gqlG~~~~~~~~ 136 (380)
|++..+|.-.-.+.|.-+ ......|.++..+.+.+|+-|+.| ..|+++|+-+|+.|+||.|..||||.++ ...
T Consensus 20 g~ml~~g~v~wd~tgkRd~~~~~NL~sphR~~~l~gv~iR~VasG~~aaH~vli~megk~~~wGRNekGQLGhgD--~k~ 97 (443)
T KOG1427|consen 20 GEMLFCGAVAWDITGKRDGAMEGNLVSPHRLRPLVGVNIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQLGHGD--MKQ 97 (443)
T ss_pred ccEEEeccchhhhhcccccccccccccceeccccccceEEEEecccchhhEEEEecccceeecccCccCccCccc--hhh
Confidence 566666655444444322 225678999999999899999865 5699999999999999999999999996 788
Q ss_pred ecCCeeecccCCccEEEEeeCCCeEEEEecCCcEEEEEeCCCCccCCCCCCCcccccccccccCCCCEEEEEecCCceEE
Q 016940 137 VTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLA 216 (380)
Q Consensus 137 ~~~p~~v~~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i~~g~~~~~~ 216 (380)
...|+.|+.++..+|++.+||++|+++||+.|+||.||+|.+||||.+........+.... ....+|+.|+||..|++.
T Consensus 98 ~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~~~v~s~~~~~-~~~~~v~~v~cga~ftv~ 176 (443)
T KOG1427|consen 98 RERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAKNEVESTPLPC-VVSDEVTNVACGADFTVW 176 (443)
T ss_pred ccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecccccccccccccccccccCCCcc-ccCccceeeccccceEEE
Confidence 8999999999999999999999999999999999999999999999998765544433333 556679999999999999
Q ss_pred EEEeCCCCEEEEEecCCCCccCCCCCCC--------------CCCCeeeeeeecCCCccEEEEccCceEEEEeCCCCEEE
Q 016940 217 LACQPSGMAVYSVGCGLGGKLGHGSRTD--------------EKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCT 282 (380)
Q Consensus 217 l~~~~~G~~vy~~G~n~~gqlg~~~~~~--------------~~~p~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~vy~ 282 (380)
|.. .+ .|.+.|--.|||||.+.... ...|..+..+ .+..|++++||.+|++|++++++||.
T Consensus 177 l~~--~~-si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~--dgvqiv~~acg~nhtvavd~nkrVys 251 (443)
T KOG1427|consen 177 LSS--TE-SILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASL--DGVQIVKVACGTNHTVAVDKNKRVYS 251 (443)
T ss_pred eec--cc-ceeecCCccccccccCcchhhccccccceeeeecCCCccccccc--cceeeEEEeccCcceeeecCCccEEE
Confidence 998 99 99999999999999985321 1223333332 45579999999999999999999999
Q ss_pred EeCCCCCCccCCCCCCccccEEecccC--CCcEEEEEecCCeEEEEeeCCCEEEEECCCC
Q 016940 283 WGWGRYGCLGHGNEECESVPKVVQALN--DVKAIHVATGDYTTFVVSEDGDVYSFGCGES 340 (380)
Q Consensus 283 wG~n~~gqLG~~~~~~~~~p~~i~~~~--~~~i~~i~~G~~~t~~l~~~g~v~~wG~n~~ 340 (380)
||.+-||.||..+..+...|+.+..+. +.-.-.+.||...++++.+-|++|.||.+..
T Consensus 252 WGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~k~ 311 (443)
T KOG1427|consen 252 WGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWGKIKN 311 (443)
T ss_pred eccccccccccccchhhHHHHHHHHhcCCCCCCcceeeecccceeecccceeEEeecccc
Confidence 999999999999988888888876553 4446678899999999999999999998753
No 5
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.95 E-value=2.5e-27 Score=230.05 Aligned_cols=272 Identities=21% Similarity=0.297 Sum_probs=214.7
Q ss_pred EEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCC--CCcEEEEEeCCCceEEEecCCcEEEeeCCCCCCCccCCCC
Q 016940 56 IAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQ--GIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQG 133 (380)
Q Consensus 56 ~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~--~~~I~~V~~g~~~~~~lt~~G~vy~~G~n~~gqlG~~~~~ 133 (380)
.+++.-.+||+||.|.+..||.|.......|.++..+. +.=+.+|+.+.+|++++++.|+||+||.+.-|.||.|+
T Consensus 136 ~~~d~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~gd-- 213 (1267)
T KOG0783|consen 136 PVLDLPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGFGD-- 213 (1267)
T ss_pred cccCCccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccCcCc--
Confidence 44555689999999999999999999999999988664 55678899999999999999999999999999999996
Q ss_pred ceeecCCeeecccCCccEEEEeeCCCeEEEEecCCcEEEEEeCCCCccCCCCCCC-cccccccccc-cCCC-CEEEEEec
Q 016940 134 TKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPN-DVEPHPLLGT-LENI-PVVQIAAG 210 (380)
Q Consensus 134 ~~~~~~p~~v~~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~-~~~p~~v~~~-~~~~-~i~~i~~g 210 (380)
....+.|..|+.+.+.+|.+|+....|+++||++|.||+||.|..+|||...... ...|..+... +++. .|+.+++|
T Consensus 214 eq~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg 293 (1267)
T KOG0783|consen 214 EQYNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAAG 293 (1267)
T ss_pred ccccccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhhhhcc
Confidence 7788899999999999999999999999999999999999999999999887643 3455555431 2232 69999999
Q ss_pred CCceEEEEEeCCCCEEEEEecCCCCccCCCCCC-CCCCCeeeeeeecCCCccEEEEccCceEEEEeCCCCEEEEeCCCCC
Q 016940 211 YCYLLALACQPSGMAVYSVGCGLGGKLGHGSRT-DEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYG 289 (380)
Q Consensus 211 ~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~-~~~~p~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~vy~wG~n~~g 289 (380)
..|+++.+ +- .||+||-|. ||||..++. ....|+.+ ......+.-|+|...-+++++.++.+|++-+-..-
T Consensus 294 ~~hsVawt---~~-~VY~wGlN~-GQlGi~~n~~~Vt~Pr~l---~~~~~~v~~v~a~~~ATVc~~~~~~i~~~ady~~~ 365 (1267)
T KOG0783|consen 294 KSHSVAWT---DT-DVYSWGLNN-GQLGISDNISVVTTPRRL---AGLLSPVIHVVATTRATVCLLQNNSIIAFADYNQV 365 (1267)
T ss_pred cceeeeee---cc-eEEEecccC-ceecCCCCCceeecchhh---cccccceEEEEecCccEEEEecCCcEEEEecccce
Confidence 99999999 55 899999986 999987653 34566544 33566788999999999999999999999875533
Q ss_pred CccCCCCCCccccEEecc--cC--CCcEEEEEecCCeEEEEeeCCCEEEEECCC
Q 016940 290 CLGHGNEECESVPKVVQA--LN--DVKAIHVATGDYTTFVVSEDGDVYSFGCGE 339 (380)
Q Consensus 290 qLG~~~~~~~~~p~~i~~--~~--~~~i~~i~~G~~~t~~l~~~g~v~~wG~n~ 339 (380)
.+..+.. ...-..+.. ++ -..+.+..+...--+++++-|+||.|=++.
T Consensus 366 k~~~n~~--~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~n 417 (1267)
T KOG0783|consen 366 KLPFNVD--FLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKN 417 (1267)
T ss_pred ecCcchh--ccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCC
Confidence 3322111 111111110 11 123445566667778999999999998663
No 6
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.93 E-value=3.3e-25 Score=222.76 Aligned_cols=293 Identities=22% Similarity=0.350 Sum_probs=209.9
Q ss_pred ceEeeeeceEEecCCCeEEEEecC--CcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeCCCceEEEecCCc
Q 016940 38 EACCRRENSQAIAGPGHSIAVTSK--GVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQ 115 (380)
Q Consensus 38 ~~~~~~~i~~i~~G~~~~~~l~~~--G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g~~~~~~lt~~G~ 115 (380)
|+|...+|++|+.|-+.++++.-- |.++.-|.. .....-+++.+...++|+.+.+...-.-++.++|+
T Consensus 520 EL~l~~~IVq~SVG~D~~~~~~~A~~G~I~~v~D~----------k~~~~~Rr~~P~n~rKIv~v~~s~~VY~~vSenGk 589 (3738)
T KOG1428|consen 520 ELCLPEPIVQISVGIDTIMFRSGAGHGWIASVDDK----------KRNGRLRRLVPSNRRKIVHVCASGHVYGYVSENGK 589 (3738)
T ss_pred EecCCCceEEEEeccchhheeeccCcceEEeccCc----------ccccchhhcCCCCcceeEEEeeeeEEEEEEccCCe
Confidence 457778999999999999988755 445554421 11122233334445689999887766778899999
Q ss_pred EEEeeCCCCCCCccCCCCceeecCCeeecccCCccEEEEeeCCCeEEEEecCCcEEEEEeCCCCccCCCCCCCccccccc
Q 016940 116 VYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPL 195 (380)
Q Consensus 116 vy~~G~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v 195 (380)
+|..|... .......+.+..+.+..|.+++.|..|.++++.+|+||.||.|+.+|+|.-.........+.
T Consensus 590 ifM~G~~t----------m~~n~SSqmln~L~~~~isslAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~ 659 (3738)
T KOG1428|consen 590 IFMGGLHT----------MRVNVSSQMLNGLDNVMISSLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRH 659 (3738)
T ss_pred EEeeccee----------EEecchHHHhhccccceeehhhccccceeEEEeCCeEEEEecCCcccccccccccccCCccc
Confidence 99998642 11223345567788888999999999999999999999999999999997543322211111
Q ss_pred cc-------------ccCCCCEEEEEecCCceEEEE----EeCCCCEEEEEecCCCCccCCCC--------C--------
Q 016940 196 LG-------------TLENIPVVQIAAGYCYLLALA----CQPSGMAVYSVGCGLGGKLGHGS--------R-------- 242 (380)
Q Consensus 196 ~~-------------~~~~~~i~~i~~g~~~~~~l~----~~~~G~~vy~~G~n~~gqlg~~~--------~-------- 242 (380)
.. =+.+.+-+.-.||....-... -+..| .+..+|.++.+.+-.+- .
T Consensus 660 s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~~~~RP~G-~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aq 738 (3738)
T KOG1428|consen 660 SGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVACGRVPRPKG-TMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQ 738 (3738)
T ss_pred ccceeecccCCccceeecCCcchhhhcccccccccccccCCCCCC-cccccCCCcccceeccccccccCcCCcCCCCHHH
Confidence 11 022334444455544332222 23456 77777777665542220 0
Q ss_pred -----------CCCCCCeeeee-eecCCCccEEEEccCceEEEEeCCCCEEEEeCCCCCCccCCCCCCccccEEecccCC
Q 016940 243 -----------TDEKHPRLIEQ-FQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALND 310 (380)
Q Consensus 243 -----------~~~~~p~~~~~-~~~~~~~i~~i~~G~~h~~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~p~~i~~~~~ 310 (380)
.....|..+.. ......++++|+||..|+++|.++++||.||+|.+||||.|++.....|+.+..+++
T Consensus 739 HvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~~~ 818 (3738)
T KOG1428|consen 739 HVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVILPSD 818 (3738)
T ss_pred hheecccccccccccCchheeeccCCcceeEEEEeccCceEEEEecCCcEEEecCCcccccCcCccccCCCcceEEcCCC
Confidence 00111222211 123455789999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEecCCeEEEEeeCCCEEEEECCCCCCCCCCCCCCC
Q 016940 311 VKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADG 351 (380)
Q Consensus 311 ~~i~~i~~G~~~t~~l~~~g~v~~wG~n~~gqlG~~~~~~~ 351 (380)
..+++|++|.+||+++..||+||.+|+-..||||.......
T Consensus 819 t~~vQVaAGSNHT~l~~~DGsVFTFGaF~KGQL~RP~~e~~ 859 (3738)
T KOG1428|consen 819 TVIVQVAAGSNHTILRANDGSVFTFGAFGKGQLARPAGEKA 859 (3738)
T ss_pred CceEEEecCCCceEEEecCCcEEEeccccCccccCcccccc
Confidence 89999999999999999999999999999999998766543
No 7
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.92 E-value=7.8e-25 Score=212.80 Aligned_cols=267 Identities=19% Similarity=0.270 Sum_probs=199.7
Q ss_pred eceEEecCCCeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeCCCceEEEecCCcEEEeeCCC
Q 016940 44 ENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDS 123 (380)
Q Consensus 44 ~i~~i~~G~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g~~~~~~lt~~G~vy~~G~n~ 123 (380)
=++||+.+..|++++++.|+||++|.+.-|.||.|+......|++++.+.+.+|.+|+++..|+++||++|-||+||.|-
T Consensus 178 ~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~gdeq~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~ 257 (1267)
T KOG0783|consen 178 LFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGFGDEQYNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNG 257 (1267)
T ss_pred HHHHHHHhhceeeEecCCCcEEEeccCCCCccCcCcccccccccccccccccceEEEEeecceeEEEeecceEEEeecCc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccCCCCceeecCCeeeccc--CCc-cEEEEeeCCCeEEEEecCCcEEEEEeCCCCccCCCCCCC-ccccccccccc
Q 016940 124 FGEAEYGVQGTKLVTSPQLVESL--KNI-FVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPN-DVEPHPLLGTL 199 (380)
Q Consensus 124 ~gqlG~~~~~~~~~~~p~~v~~~--~~~-~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~-~~~p~~v~~~~ 199 (380)
.+|||..+ +......|.+|... ++. .|+.|++|..|+++.|+. .||+||.|. ||||..+... ...|..+. -
T Consensus 258 ~hqLG~~~-~~~~~~~p~qI~a~r~kg~~~iIgvaAg~~hsVawt~~-~VY~wGlN~-GQlGi~~n~~~Vt~Pr~l~--~ 332 (1267)
T KOG0783|consen 258 SHQLGLSN-DELKKDDPIQITARRIKGFKQIIGVAAGKSHSVAWTDT-DVYSWGLNN-GQLGISDNISVVTTPRRLA--G 332 (1267)
T ss_pred ccccCCcC-chhhcCchhhhhhHhhcchhhhhhhhcccceeeeeecc-eEEEecccC-ceecCCCCCceeecchhhc--c
Confidence 99999987 34444555555322 222 589999999999999877 699999986 9999877633 34565553 4
Q ss_pred CCCCEEEEEecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeee--eeecCCCccEEEEccCceEEEEeCC
Q 016940 200 ENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIE--QFQLLNLQPVVVAAGAWHAAVVGQD 277 (380)
Q Consensus 200 ~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~--~~~~~~~~i~~i~~G~~h~~~lt~~ 277 (380)
...+|..++|....+++++. ++ .+|++-+-..-.+.... .......+. .+......+.+..+...-.+++|+.
T Consensus 333 ~~~~v~~v~a~~~ATVc~~~--~~-~i~~~ady~~~k~~~n~--~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~ 407 (1267)
T KOG0783|consen 333 LLSPVIHVVATTRATVCLLQ--NN-SIIAFADYNQVKLPFNV--DFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTEL 407 (1267)
T ss_pred cccceEEEEecCccEEEEec--CC-cEEEEecccceecCcch--hccceeEEecCccchhhhhhhhcchhhhheeeeccC
Confidence 45669999999999999998 88 99998643322222111 000111110 0111122345677777788999999
Q ss_pred CCEEEEeCCCCCCccCCCCCCccccEEecccCCCcEEEEEecCCeEEEEeeCC
Q 016940 278 GRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDG 330 (380)
Q Consensus 278 g~vy~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~t~~l~~~g 330 (380)
|+||.|-++.... ..+.-.|..+- .|.+|+--.+..++++.||
T Consensus 408 g~Vy~w~s~ns~~-----~~c~ftp~r~~-----~isdIa~~~N~~~~~t~dG 450 (1267)
T KOG0783|consen 408 GEVYEWDSKNSTR-----TSCKFTPLRIF-----EISDIAWTANSLILCTRDG 450 (1267)
T ss_pred CeEEEEecCCCce-----eeeecccceee-----ehhhhhhccceEEEEecCc
Confidence 9999999766211 22233343332 3456766678888999999
No 8
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.83 E-value=1.4e-19 Score=182.90 Aligned_cols=271 Identities=20% Similarity=0.246 Sum_probs=180.5
Q ss_pred eeeeceEEecCCCeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeCCCceEEEecCCcEEEee
Q 016940 41 CRRENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFG 120 (380)
Q Consensus 41 ~~~~i~~i~~G~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g~~~~~~lt~~G~vy~~G 120 (380)
.+++|+.+.....-.-++.++|++|..|..... ....-..+..+.+.-|.+++.|..|.++++.+|+||+||
T Consensus 567 n~rKIv~v~~s~~VY~~vSenGkifM~G~~tm~--------~n~SSqmln~L~~~~isslAlGKsH~~av~rNG~l~T~G 638 (3738)
T KOG1428|consen 567 NRRKIVHVCASGHVYGYVSENGKIFMGGLHTMR--------VNVSSQMLNGLDNVMISSLALGKSHGVAVTRNGHLFTWG 638 (3738)
T ss_pred CcceeEEEeeeeEEEEEEccCCeEEeecceeEE--------ecchHHHhhccccceeehhhccccceeEEEeCCeEEEEe
Confidence 345888876665555688999999998843211 011223445667778999999999999999999999999
Q ss_pred CCCCCCCccCCCCceeecCCeeec-------------ccCCccEEEEeeCC----CeEEE--EecCCcEEEEEeCCCCcc
Q 016940 121 KDSFGEAEYGVQGTKLVTSPQLVE-------------SLKNIFVVQAAIGN----FFTAV--LSREGRVYTFSWGNDARL 181 (380)
Q Consensus 121 ~n~~gqlG~~~~~~~~~~~p~~v~-------------~~~~~~i~~i~~g~----~~~~~--lt~~G~vy~~G~n~~gql 181 (380)
.|+.+|+|.-.. ......|..-. -+.+..-+-..||. .-++. -.-.|.+..||.+..+++
T Consensus 639 lNN~~QCGRVEs-~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~ 717 (3738)
T KOG1428|consen 639 LNNMNQCGRVES-TSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVACGRVPRPKGTMCHCGVGESTCL 717 (3738)
T ss_pred cCCccccccccc-ccccCCcccccceeecccCCccceeecCCcchhhhcccccccccccccCCCCCCcccccCCCcccce
Confidence 999999997431 11112221111 01111111111221 11111 123566777777765443
Q ss_pred CCC--------CCCC------------ccccccccc---------ccCCCCEEEEEecCCceEEEEEeCCCCEEEEEecC
Q 016940 182 GHH--------TEPN------------DVEPHPLLG---------TLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCG 232 (380)
Q Consensus 182 g~~--------~~~~------------~~~p~~v~~---------~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n 232 (380)
-.+ ..+. ...|.+... ..-+.++.+++||..|+++|.+ |+ +||++|+|
T Consensus 718 ~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~HtVlL~s--d~-~VfTFG~~ 794 (3738)
T KOG1428|consen 718 RCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCGNFHTVLLAS--DR-RVFTFGSN 794 (3738)
T ss_pred eccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEEeccCceEEEEec--CC-cEEEecCC
Confidence 211 1110 112222211 1235679999999999999999 99 99999999
Q ss_pred CCCccCCCCCCCCCCCeeeeeeecCCCccEEEEccCceEEEEeCCCCEEEEeCCCCCCccCCC---CCCccccEEecccC
Q 016940 233 LGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGN---EECESVPKVVQALN 309 (380)
Q Consensus 233 ~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~vy~wG~n~~gqLG~~~---~~~~~~p~~i~~~~ 309 (380)
.+||||.++......|.++..+ .+..+++|++|.+|++++..||.||.||.-..|||+.+- ......|.+++.+.
T Consensus 795 ~HGQLG~GDt~Sk~~Pq~V~~~--~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF~KGQL~RP~~e~~~WNA~Pe~v~~~G 872 (3738)
T KOG1428|consen 795 CHGQLGVGDTLSKNTPQQVILP--SDTVIVQVAAGSNHTILRANDGSVFTFGAFGKGQLARPAGEKAGWNAIPEKVSGFG 872 (3738)
T ss_pred cccccCcCccccCCCcceEEcC--CCCceEEEecCCCceEEEecCCcEEEeccccCccccCccccccccccCCCcCCCCC
Confidence 9999999999988999988765 344789999999999999999999999999999999864 33456788887654
Q ss_pred ---CCcEEEEEecCCeEEE
Q 016940 310 ---DVKAIHVATGDYTTFV 325 (380)
Q Consensus 310 ---~~~i~~i~~G~~~t~~ 325 (380)
+...-.|.+.++.+++
T Consensus 873 ~~f~~~A~WIGAdGDss~i 891 (3738)
T KOG1428|consen 873 PGFNAFAGWIGADGDSSII 891 (3738)
T ss_pred ccccccceeeccCCCccee
Confidence 2234455555544443
No 9
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.29 E-value=4e-12 Score=85.39 Aligned_cols=50 Identities=42% Similarity=0.728 Sum_probs=47.2
Q ss_pred CCCEEEEeCCCCCCcc-CCCCCCccccEEecccCCCcEEEEEecCCeEEEE
Q 016940 277 DGRVCTWGWGRYGCLG-HGNEECESVPKVVQALNDVKAIHVATGDYTTFVV 326 (380)
Q Consensus 277 ~g~vy~wG~n~~gqLG-~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~t~~l 326 (380)
+|+||+||.|.+|||| .+.......|++++.+.+.+|++|+||.+|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6899999999999999 7778889999999999999999999999999987
No 10
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.25 E-value=7.6e-12 Score=84.03 Aligned_cols=50 Identities=42% Similarity=0.711 Sum_probs=47.0
Q ss_pred CCcEEEeeCCCCCCcC-CCCCCCccceeeccCCCCCcEEEEEeCCCceEEE
Q 016940 61 KGVVYSFGSNSSGQLG-HGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLI 110 (380)
Q Consensus 61 ~G~v~~~G~n~~gqlG-~~~~~~~~~p~~v~~~~~~~I~~V~~g~~~~~~l 110 (380)
||+||+||.|.+|||| .+.......|++++.+.+.+|++|+||..|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 7999999999999999 7777888999999999999999999999999987
No 11
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.14 E-value=6.7e-11 Score=69.41 Aligned_cols=30 Identities=30% Similarity=0.681 Sum_probs=26.0
Q ss_pred EEEEEecCCeEEEEeeCCCEEEEECCCCCC
Q 016940 313 AIHVATGDYTTFVVSEDGDVYSFGCGESAS 342 (380)
Q Consensus 313 i~~i~~G~~~t~~l~~~g~v~~wG~n~~gq 342 (380)
|++|+||.+|+++|+++|+||+||+|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 689999999999999999999999999998
No 12
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.11 E-value=8.9e-11 Score=68.90 Aligned_cols=30 Identities=37% Similarity=0.753 Sum_probs=25.7
Q ss_pred cEEEEccCceEEEEeCCCCEEEEeCCCCCC
Q 016940 261 PVVVAAGAWHAAVVGQDGRVCTWGWGRYGC 290 (380)
Q Consensus 261 i~~i~~G~~h~~~lt~~g~vy~wG~n~~gq 290 (380)
|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 579999999999999999999999999987
No 13
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=3.1e-12 Score=126.82 Aligned_cols=188 Identities=27% Similarity=0.418 Sum_probs=144.0
Q ss_pred eeeeceEEecCCCeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeCCCceEEEecCCcEEEee
Q 016940 41 CRRENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFG 120 (380)
Q Consensus 41 ~~~~i~~i~~G~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g~~~~~~lt~~G~vy~~G 120 (380)
....|.||+||.+|+++++..|++++||.|.+||+|.+.......|.+++.+.+.+..+|++|..|+.++..
T Consensus 12 ~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~-------- 83 (850)
T KOG0941|consen 12 NYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSS-------- 83 (850)
T ss_pred hhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhh--------
Confidence 345789999999999999999999999999999999985443334999999999999999999999999887
Q ss_pred CCCCCCCccCCCCceeecCCeeecccCCccEEEEeeCCCeEEEEecCCcEEEEEeCCCCccCCCCCCCcccccccccccC
Q 016940 121 KDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLE 200 (380)
Q Consensus 121 ~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~ 200 (380)
|+++++.+|.++.+|.+..+|+|.........|..+.. ..
T Consensus 84 ---------------------------------------~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~~~~~~v~e-~i 123 (850)
T KOG0941|consen 84 ---------------------------------------HTVLLTDEGKVFSFGAGSTGQLGHSLTENEVLPLLVLE-LI 123 (850)
T ss_pred ---------------------------------------chhhcchhccccccCCcccccccccccccccccHHHHH-HH
Confidence 89999999999999999999999977777777777765 66
Q ss_pred CCCEEEEEecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeee-cCCCccEEEEccCceEEEEeCCCC
Q 016940 201 NIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQ-LLNLQPVVVAAGAWHAAVVGQDGR 279 (380)
Q Consensus 201 ~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~-~~~~~i~~i~~G~~h~~~lt~~g~ 279 (380)
...+..|+|+..|+++... +-| ++|..|.+..|. +.-.....+......+ .....+..+++|.+.+..+...+.
T Consensus 124 ~~~~t~ia~~~~ht~a~v~-~l~-qsf~~~~~~sGk---~~i~s~s~~~~l~~~d~~~~~~~~~~~~g~dq~~~l~~~~~ 198 (850)
T KOG0941|consen 124 GSRVTRIACVRGHTLAIVP-RLG-QSFSFGKGASGK---GVIVSLSGEDLLRDHDSEKDHRCSLAFAGGDQTFSLSSKGE 198 (850)
T ss_pred hhhhHHHHHHHHHHHhhhh-hhc-ceeecccCCCCC---ceeeccchhhhcccccHHHHHHHHHHhcCCCceEEEEeecc
Confidence 6779999999999888875 256 899999887761 0001111111111111 011123457888888888776655
Q ss_pred EE
Q 016940 280 VC 281 (380)
Q Consensus 280 vy 281 (380)
-.
T Consensus 199 ~~ 200 (850)
T KOG0941|consen 199 NS 200 (850)
T ss_pred cc
Confidence 43
No 14
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.9e-11 Score=121.28 Aligned_cols=151 Identities=30% Similarity=0.493 Sum_probs=129.1
Q ss_pred CeeecccCCccEEEEeeCCCeEEEEecCCcEEEEEeCCCCccCCCCCCCcccccccccccCCCCEEEEEecCCceEEEEE
Q 016940 140 PQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALAC 219 (380)
Q Consensus 140 p~~v~~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i~~g~~~~~~l~~ 219 (380)
|..+..+.-.+|.+++||..|+++++..|++|+||.+.+||+|.+.......|..+.. +.+.+..+|++|.+|++++.
T Consensus 5 ~~~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~s-l~g~p~a~v~~g~~hs~~lS- 82 (850)
T KOG0941|consen 5 PRLVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVES-LKGVPLAQVSAGEAHSFALS- 82 (850)
T ss_pred hHHHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchh-hcCCcHHHHhcCCCcchhhh-
Confidence 4444445556799999999999999999999999999999999985544445888887 88999999999999998866
Q ss_pred eCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEccCceEEEEeCCCCEEEEeCCCCCCccCCCCCCc
Q 016940 220 QPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECE 299 (380)
Q Consensus 220 ~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~vy~wG~n~~gqLG~~~~~~~ 299 (380)
. |+++++++|.++.+|....+|+|..-+...
T Consensus 83 -----~--------------------------------------------~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~ 113 (850)
T KOG0941|consen 83 -----S--------------------------------------------HTVLLTDEGKVFSFGAGSTGQLGHSLTENE 113 (850)
T ss_pred -----h--------------------------------------------chhhcchhccccccCCcccccccccccccc
Confidence 1 899999999999999999999999767777
Q ss_pred cccEEecccCCCcEEEEEecCCeEEEEee-CCCEEEEECCCCC
Q 016940 300 SVPKVVQALNDVKAIHVATGDYTTFVVSE-DGDVYSFGCGESA 341 (380)
Q Consensus 300 ~~p~~i~~~~~~~i~~i~~G~~~t~~l~~-~g~v~~wG~n~~g 341 (380)
..|..+...-+..+..|+||..|+.+... -|++|..|.+..|
T Consensus 114 ~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sG 156 (850)
T KOG0941|consen 114 VLPLLVLELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASG 156 (850)
T ss_pred cccHHHHHHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCC
Confidence 77877766666689999999999999875 6999999999887
No 15
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=94.53 E-value=1.5 Score=48.79 Aligned_cols=56 Identities=9% Similarity=0.248 Sum_probs=38.2
Q ss_pred cCceEEEEeCCCCEEEEeCCCCCCccCCCCCCccccEEec--ccCCCcEEEEEecCC-eEEEEeeCCCEEEEE
Q 016940 267 GAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQ--ALNDVKAIHVATGDY-TTFVVSEDGDVYSFG 336 (380)
Q Consensus 267 G~~h~~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~p~~i~--~~~~~~i~~i~~G~~-~t~~l~~~g~v~~wG 336 (380)
+.+++++|++.|++-..- .. ..|++++ .+++ .|++++.-.. +-++++.+|++|..=
T Consensus 712 ~~~~fvald~qg~lt~h~--k~-----------g~p~~l~~~gl~G-~ik~l~lD~~~nL~Alt~~G~Lf~~~ 770 (1774)
T PF11725_consen 712 NDNKFVALDDQGDLTAHQ--KP-----------GRPVPLSRPGLSG-EIKDLALDEKQNLYALTSTGELFRLP 770 (1774)
T ss_pred cCCceEEeccCCcccccc--CC-----------CCCccCCCCCCCc-chhheeeccccceeEecCCCceeecC
Confidence 667888888888876442 11 1144443 4433 7999999887 556899999999853
No 16
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=93.41 E-value=5.5 Score=35.54 Aligned_cols=182 Identities=13% Similarity=0.114 Sum_probs=94.0
Q ss_pred HHhhhhhcCCCceeEEEEEeecceEeeeeceEEecCCCeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCC-
Q 016940 16 RQDLKQKCGGSWKLVLRFLLAGEACCRRENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQG- 94 (380)
Q Consensus 16 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~i~~G~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~- 94 (380)
-.++-+++|.+|+.++=....|. +.+.| +=.-+.=.-+-+|.|++..+-+.|.+-+|=.-. ...|.++..+++
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~--C~rTi-qh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~---S~np~Pv~t~e~h 82 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGI--CSRTI-QHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLN---SNNPNPVATFEGH 82 (311)
T ss_pred CceEEEeccCcceeeeeehhcCe--EEEEE-ecCccceeeEEEcCCcchhhhccCCeeEEEEcc---CCCCCceeEEecc
Confidence 44566788888888876555554 22221 222233344667777777776655443331111 112223332221
Q ss_pred -CcEEEEEe--CCCceEEEecCCcEEEeeCCCCCCCccCCCCceeecCCeeecccCCccEEEEe--eCCCeEEEEecCCc
Q 016940 95 -IRIIQAAA--GAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAA--IGNFFTAVLSREGR 169 (380)
Q Consensus 95 -~~I~~V~~--g~~~~~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~--~g~~~~~~lt~~G~ 169 (380)
..|..|.. -+.--+-=.+||.+-.|-..+ +.. .+....+ .+|-.|. -...+.+.=+.+|+
T Consensus 83 ~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~---~~~----qR~~~~~--------spVn~vvlhpnQteLis~dqsg~ 147 (311)
T KOG0315|consen 83 TKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS---LSC----QRNYQHN--------SPVNTVVLHPNQTELISGDQSGN 147 (311)
T ss_pred CCceEEEEEeecCeEEEecCCCceEEEEeccC---ccc----chhccCC--------CCcceEEecCCcceEEeecCCCc
Confidence 24555543 222333334677777775432 100 0111111 1222332 23445566678999
Q ss_pred EEEEEeCCCCccCCCCCCCcccccccccccCCCCEEEEEecCCceEEEEEeCCCCEEEEEec
Q 016940 170 VYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGC 231 (380)
Q Consensus 170 vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~ 231 (380)
|++|-...+.. .....| -.+.+|.+++...+-+++......| +.|+|-.
T Consensus 148 irvWDl~~~~c------~~~liP------e~~~~i~sl~v~~dgsml~a~nnkG-~cyvW~l 196 (311)
T KOG0315|consen 148 IRVWDLGENSC------THELIP------EDDTSIQSLTVMPDGSMLAAANNKG-NCYVWRL 196 (311)
T ss_pred EEEEEccCCcc------ccccCC------CCCcceeeEEEcCCCcEEEEecCCc-cEEEEEc
Confidence 99995443211 111112 3345689999988888777766688 9999963
No 17
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=93.29 E-value=6.3 Score=39.20 Aligned_cols=108 Identities=19% Similarity=0.192 Sum_probs=65.0
Q ss_pred eCCCceEEEecCCcEEEeeCCCCCCCccCCCCceeecCCeeecccCCccEEEEeeCC-CeEEEEecCCcEEE-EEeCCCC
Q 016940 102 AGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGN-FFTAVLSREGRVYT-FSWGNDA 179 (380)
Q Consensus 102 ~g~~~~~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~-~~~~~lt~~G~vy~-~G~n~~g 179 (380)
.|.....+|.++|++|.- .| .... .+....-+.+.. ...+.+|++|. .-..+++++|.||. -|-..+.
T Consensus 190 ~g~~~awAI~s~Gd~y~R----tG---vs~~-~P~GraW~~i~~--~t~L~qISagPtg~VwAvt~nG~vf~R~GVsRqN 259 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYLR----TG---VSVD-RPCGRAWKVICP--YTDLSQISAGPTGVVWAVTENGAVFYREGVSRQN 259 (705)
T ss_pred CCceEEEEEecCCcEEEe----cc---ccCC-CCCCceeeecCC--CCccceEeecCcceEEEEeeCCcEEEEecccccC
Confidence 445556788888888863 22 1110 000011111111 11378999998 67889999999873 3444455
Q ss_pred ccCCCCCCCcccccccccccCCCCEEEEEecCCceEEEEEeCCCCEEEEE
Q 016940 180 RLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSV 229 (380)
Q Consensus 180 qlg~~~~~~~~~p~~v~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~ 229 (380)
+.|..-. ...+|... ..++.|+.|....-+|+. +| .+|.=
T Consensus 260 p~GdsWk-dI~tP~~a------~~~v~iSvGt~t~Waldn--dg-~lwfr 299 (705)
T KOG3669|consen 260 PEGDSWK-DIVTPRQA------LEPVCISVGTQTLWALDN--DG-NLWFR 299 (705)
T ss_pred CCCchhh-hccCcccc------cceEEEEeccceEEEEec--CC-cEEEE
Confidence 5554432 22233332 239999999999999998 99 88763
No 18
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=92.76 E-value=0.013 Score=61.47 Aligned_cols=134 Identities=15% Similarity=0.073 Sum_probs=91.3
Q ss_pred CccEEEEeeCCCeEEEEecCCcEEEEEeCCCCccCCC--CCCCcccccccccccCCCCEEEEEecCCceEEEEEeCCCCE
Q 016940 148 NIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHH--TEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMA 225 (380)
Q Consensus 148 ~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~--~~~~~~~p~~v~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~ 225 (380)
..+++.|.+-.+..++|..+|++|.|.|....-+-.. ..++...|.-...-+.+.+|+.+++..-..-++|. +| .
T Consensus 373 an~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~--ng-h 449 (3015)
T KOG0943|consen 373 ANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATE--NG-H 449 (3015)
T ss_pred CCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeec--CC-c
Confidence 3467778777888899999999999999986655442 22334445555545778899999999888888888 99 9
Q ss_pred EEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEccCceEEEEeCCCCEEEEeCCCCC
Q 016940 226 VYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYG 289 (380)
Q Consensus 226 vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~vy~wG~n~~g 289 (380)
|.+|=.. .|.+.... ..-+........+..+++..|...|.+|..+++-+|-||--.+.
T Consensus 450 lasWlDE----cgagV~fk-La~ea~Tkieed~~maVqd~~~adhlaAf~~dniihWcGiVPf~ 508 (3015)
T KOG0943|consen 450 LASWLDE----CGAGVAFK-LAHEAQTKIEEDGEMAVQDHCCADHLAAFLEDNIIHWCGIVPFS 508 (3015)
T ss_pred hhhHHhh----hhhhhhhh-hhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhceeeEEeeeeeh
Confidence 9998421 12111110 00011111122445678888999999999999999999975543
No 19
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=92.37 E-value=7.8 Score=34.60 Aligned_cols=72 Identities=17% Similarity=0.068 Sum_probs=45.8
Q ss_pred CCEEEEEecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEccCc--eEEEEeCCCC
Q 016940 202 IPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAW--HAAVVGQDGR 279 (380)
Q Consensus 202 ~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~--h~~~lt~~g~ 279 (380)
.+|..|....+-+=.+..|++| .|++|--.+ ........|+.. ..|.+++...+ --++.+..|+
T Consensus 125 spVn~vvlhpnQteLis~dqsg-~irvWDl~~------~~c~~~liPe~~-------~~i~sl~v~~dgsml~a~nnkG~ 190 (311)
T KOG0315|consen 125 SPVNTVVLHPNQTELISGDQSG-NIRVWDLGE------NSCTHELIPEDD-------TSIQSLTVMPDGSMLAAANNKGN 190 (311)
T ss_pred CCcceEEecCCcceEEeecCCC-cEEEEEccC------CccccccCCCCC-------cceeeEEEcCCCcEEEEecCCcc
Confidence 5577777777777777777799 999995322 122223333322 34555555444 5567788999
Q ss_pred EEEEeCCC
Q 016940 280 VCTWGWGR 287 (380)
Q Consensus 280 vy~wG~n~ 287 (380)
+|+|-.-.
T Consensus 191 cyvW~l~~ 198 (311)
T KOG0315|consen 191 CYVWRLLN 198 (311)
T ss_pred EEEEEccC
Confidence 99998644
No 20
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=92.21 E-value=10 Score=37.86 Aligned_cols=108 Identities=20% Similarity=0.284 Sum_probs=67.0
Q ss_pred eCCCeEEEEecCCcEEEEEeCCCCccCCCCCCCcccccccccccCCCCEEEEEecC-CceEEEEEeCCCCEEEEEecCCC
Q 016940 156 IGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGY-CYLLALACQPSGMAVYSVGCGLG 234 (380)
Q Consensus 156 ~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i~~g~-~~~~~l~~~~~G~~vy~~G~n~~ 234 (380)
.|.....||..+|.+|. +-|.......-..-++. ....++.+|++|. .-..+++. +|.-+|=.|-.++
T Consensus 190 ~g~~~awAI~s~Gd~y~-------RtGvs~~~P~GraW~~i--~~~t~L~qISagPtg~VwAvt~--nG~vf~R~GVsRq 258 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYL-------RTGVSVDRPCGRAWKVI--CPYTDLSQISAGPTGVVWAVTE--NGAVFYREGVSRQ 258 (705)
T ss_pred CCceEEEEEecCCcEEE-------eccccCCCCCCceeeec--CCCCccceEeecCcceEEEEee--CCcEEEEeccccc
Confidence 45556677788888882 22322222221122222 2223599999998 66777787 9934555676666
Q ss_pred CccCCCCCCCCCCCeeeeeeecCCCccEEEEccCceEEEEeCCCCEEE
Q 016940 235 GKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCT 282 (380)
Q Consensus 235 gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~vy~ 282 (380)
.+.|..-. +...|+... .++.|+.|....-+||.+|.+|.
T Consensus 259 Np~GdsWk-dI~tP~~a~-------~~v~iSvGt~t~Waldndg~lwf 298 (705)
T KOG3669|consen 259 NPEGDSWK-DIVTPRQAL-------EPVCISVGTQTLWALDNDGNLWF 298 (705)
T ss_pred CCCCchhh-hccCccccc-------ceEEEEeccceEEEEecCCcEEE
Confidence 66554322 334444321 37899999999999999999984
No 21
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=92.02 E-value=7.6 Score=34.66 Aligned_cols=197 Identities=15% Similarity=0.111 Sum_probs=99.1
Q ss_pred ecCCCeEEEEecCCcEEEeeCCCCCCcCCCCCCC-------ccceeeccCCCCCcEEE-EEeCCCceEEEecCCc--EEE
Q 016940 49 IAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEE-------EWRPRPIRSLQGIRIIQ-AAAGAGRTMLISDAGQ--VYA 118 (380)
Q Consensus 49 ~~G~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~-------~~~p~~v~~~~~~~I~~-V~~g~~~~~~lt~~G~--vy~ 118 (380)
-+|.+-..+.-.+|-||..-.|.+..+......+ ...-..+..+...+|++ ++...+.-.+||-..+ |-.
T Consensus 47 ~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrv 126 (334)
T KOG0278|consen 47 DTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRV 126 (334)
T ss_pred CCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhh
Confidence 4677788888889999998888776554433222 12223344445445553 3444443333332111 111
Q ss_pred eeCCCCCCCccCCCCceeecCCeeecccCCccEEE-EeeCCCeEEEE-ecCCcEEEEEeCCCCccCCCCCCCcccccccc
Q 016940 119 FGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQ-AAIGNFFTAVL-SREGRVYTFSWGNDARLGHHTEPNDVEPHPLL 196 (380)
Q Consensus 119 ~G~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~-i~~g~~~~~~l-t~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~ 196 (380)
+-. .+....|..+..-.+. |+. +-|-.+++++- ++++.|-.|-.- +-++++
T Consensus 127 fdl------------n~p~App~E~~ghtg~-Ir~v~wc~eD~~iLSSadd~tVRLWD~r--------------Tgt~v~ 179 (334)
T KOG0278|consen 127 FDL------------NRPKAPPKEISGHTGG-IRTVLWCHEDKCILSSADDKTVRLWDHR--------------TGTEVQ 179 (334)
T ss_pred hhc------------cCCCCCchhhcCCCCc-ceeEEEeccCceEEeeccCCceEEEEec--------------cCcEEE
Confidence 111 2334456666554444 444 55888888776 678888877322 122333
Q ss_pred cccCCCCEEEEEecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEccCceEEEEeC
Q 016940 197 GTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQ 276 (380)
Q Consensus 197 ~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~h~~~lt~ 276 (380)
....+.++.+......--++.+. +|..|-.|-.+.++.| .....|..+........+ -...|| -+
T Consensus 180 sL~~~s~VtSlEvs~dG~ilTia--~gssV~Fwdaksf~~l-----Ks~k~P~nV~SASL~P~k-~~fVaG-------ge 244 (334)
T KOG0278|consen 180 SLEFNSPVTSLEVSQDGRILTIA--YGSSVKFWDAKSFGLL-----KSYKMPCNVESASLHPKK-EFFVAG-------GE 244 (334)
T ss_pred EEecCCCCcceeeccCCCEEEEe--cCceeEEeccccccce-----eeccCccccccccccCCC-ceEEec-------Cc
Confidence 32333344444444333333333 5547888866655443 234455555443322222 122222 35
Q ss_pred CCCEEEEeCCC
Q 016940 277 DGRVCTWGWGR 287 (380)
Q Consensus 277 ~g~vy~wG~n~ 287 (380)
++.+|-+-++.
T Consensus 245 d~~~~kfDy~T 255 (334)
T KOG0278|consen 245 DFKVYKFDYNT 255 (334)
T ss_pred ceEEEEEeccC
Confidence 66677776655
No 22
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=91.86 E-value=5.7 Score=40.59 Aligned_cols=102 Identities=16% Similarity=0.132 Sum_probs=60.5
Q ss_pred EecCCCeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeCCCceEEEecCCcEEEeeCCCCCCC
Q 016940 48 AIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEA 127 (380)
Q Consensus 48 i~~G~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g~~~~~~lt~~G~vy~~G~n~~gql 127 (380)
|+.|..|-|++ .||.|-.|..+.- .+ -..+|..|+...+.++++|.-++=..++.-..+.
T Consensus 138 vSVGsQHDMIV----nv~dWr~N~~~as-----------nk----iss~Vsav~fsEdgSYfvT~gnrHvk~wyl~~~~- 197 (1080)
T KOG1408|consen 138 VSVGSQHDMIV----NVNDWRVNSSGAS-----------NK----ISSVVSAVAFSEDGSYFVTSGNRHVKLWYLQIQS- 197 (1080)
T ss_pred EeeccccceEE----Ehhhhhhcccccc-----------cc----cceeEEEEEEccCCceeeeeeeeeEEEEEeeccc-
Confidence 45677777777 5677766643310 01 1226778888888888888866533333211111
Q ss_pred ccCCCCceeecCCeee---cccCCccEEEEeeCCC----eEEEEecCCcEEEE
Q 016940 128 EYGVQGTKLVTSPQLV---ESLKNIFVVQAAIGNF----FTAVLSREGRVYTF 173 (380)
Q Consensus 128 G~~~~~~~~~~~p~~v---~~~~~~~i~~i~~g~~----~~~~lt~~G~vy~~ 173 (380)
. -...++.|-+- ..+.+..+.+|+||.. .++++|..|.|.-+
T Consensus 198 --K--ykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEF 246 (1080)
T KOG1408|consen 198 --K--YKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEF 246 (1080)
T ss_pred --c--ccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeee
Confidence 0 01222222222 2344455789999988 89999999999844
No 23
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=90.16 E-value=0.039 Score=58.23 Aligned_cols=134 Identities=12% Similarity=0.072 Sum_probs=86.9
Q ss_pred CCcEEEEEeCCCceEEEecCCcEEEeeCCCCCCCccCCCCceeecCCeee-cccCCccEEEEeeCCCeEEEEecCCcEEE
Q 016940 94 GIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLV-ESLKNIFVVQAAIGNFFTAVLSREGRVYT 172 (380)
Q Consensus 94 ~~~I~~V~~g~~~~~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~~~p~~v-~~~~~~~i~~i~~g~~~~~~lt~~G~vy~ 172 (380)
..+++.|.+-.+-.++|..+|++|.|-+...--+-....-.+....|..- -.+.+.+|+.+++..-..-++|++|+|-.
T Consensus 373 an~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlas 452 (3015)
T KOG0943|consen 373 ANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLAS 452 (3015)
T ss_pred CCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhh
Confidence 34788888877888999999999999987654443221112233333322 24567889999999989999999999998
Q ss_pred EEeCCCCccCCCCCCC--cccccccccccCCCCEEEEEecCCceEEEEEeCCCCEEEEEecCCCCc
Q 016940 173 FSWGNDARLGHHTEPN--DVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGK 236 (380)
Q Consensus 173 ~G~n~~gqlg~~~~~~--~~~p~~v~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gq 236 (380)
|- ..+|.+.... ...-+++. ..+..+++.-|...|.++... |. .||-||--.+.+
T Consensus 453 Wl----DEcgagV~fkLa~ea~Tkie--ed~~maVqd~~~adhlaAf~~--dn-iihWcGiVPf~e 509 (3015)
T KOG0943|consen 453 WL----DECGAGVAFKLAHEAQTKIE--EDGEMAVQDHCCADHLAAFLE--DN-IIHWCGIVPFSE 509 (3015)
T ss_pred HH----hhhhhhhhhhhhhhhhhhhh--hhhHHHHHHHHHHHHHHHHhh--hc-eeeEEeeeeehh
Confidence 83 2222222111 11122222 344556777777778877776 77 999999655544
No 24
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=87.97 E-value=36 Score=35.28 Aligned_cols=113 Identities=16% Similarity=0.093 Sum_probs=64.7
Q ss_pred EEEEecCCcEEEEEeCCCCccCCCCCCCcccccccccccCCCCEEEEEecCCceEEEEEeCCCCEEEEEecCCCCccCCC
Q 016940 161 TAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHG 240 (380)
Q Consensus 161 ~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~ 240 (380)
++++...|.=.+.|...-|||....-.....-.+.+.... .+..++-..+-.++.|-.+|| +|-+|-..+
T Consensus 312 t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~--~i~~l~YSpDgq~iaTG~eDg-KVKvWn~~S------- 381 (893)
T KOG0291|consen 312 TVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSD--RITSLAYSPDGQLIATGAEDG-KVKVWNTQS------- 381 (893)
T ss_pred EEEecccCCEEEEcCCccceEEEEEeeccceeeecccccc--ceeeEEECCCCcEEEeccCCC-cEEEEeccC-------
Confidence 4444555555555555555555333222222222222222 377777777777777766788 999995322
Q ss_pred CCCCCCCCeeeeeeec--CCCccEEEEccCceEEEEeCCCCEEEEeCCCCCC
Q 016940 241 SRTDEKHPRLIEQFQL--LNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGC 290 (380)
Q Consensus 241 ~~~~~~~p~~~~~~~~--~~~~i~~i~~G~~h~~~lt~~g~vy~wG~n~~gq 290 (380)
....+ .+.. .....+++..-.+..+...-||.|-+|-...|..
T Consensus 382 ------gfC~v-TFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN 426 (893)
T KOG0291|consen 382 ------GFCFV-TFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN 426 (893)
T ss_pred ------ceEEE-EeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce
Confidence 11222 1221 2334567777777788888999999999888764
No 25
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=87.90 E-value=21 Score=34.63 Aligned_cols=154 Identities=15% Similarity=0.146 Sum_probs=84.9
Q ss_pred EEEEeeCCC--eEEEEecCCcEEEEEeCCCCccCCCCCCCcccccccccccCCCCEEEEEecCCceEEEEEeCCCCEEEE
Q 016940 151 VVQAAIGNF--FTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYS 228 (380)
Q Consensus 151 i~~i~~g~~--~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~ 228 (380)
+..+++... +.++=|..|++|.|-.++-.-|..- . ---..|+.+....+-+.+++..+|| .|.+
T Consensus 84 v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~-----------~--aHYQ~ITcL~fs~dgs~iiTgskDg-~V~v 149 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTISGNLYLWELSSGILLNVL-----------S--AHYQSITCLKFSDDGSHIITGSKDG-AVLV 149 (476)
T ss_pred eeeeecCCCceEEEeecccCcEEEEEeccccHHHHH-----------H--hhccceeEEEEeCCCcEEEecCCCc-cEEE
Confidence 455555433 3444468999999976652211110 0 1113388888888888999988899 9999
Q ss_pred EecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEccCce--EEEEe--CCCCEEEEeCCCCCCccCCC-CCCccccE
Q 016940 229 VGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWH--AAVVG--QDGRVCTWGWGRYGCLGHGN-EECESVPK 303 (380)
Q Consensus 229 ~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~h--~~~lt--~~g~vy~wG~n~~gqLG~~~-~~~~~~p~ 303 (380)
|=--.. -+......|..+..+.+..-.|+++.+|..- +.+.| .|..+-+|--.. +. -..+..|.
T Consensus 150 W~l~~l-----v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~------g~LLlti~fp~ 218 (476)
T KOG0646|consen 150 WLLTDL-----VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL------GVLLLTITFPS 218 (476)
T ss_pred EEEEee-----cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecc------ceeeEEEecCC
Confidence 953211 1111222555555666666678877776552 22222 333344443211 11 11223333
Q ss_pred EecccCCCcEEEEEecCCeEEEEeeCCCEEEE
Q 016940 304 VVQALNDVKAIHVATGDYTTFVVSEDGDVYSF 335 (380)
Q Consensus 304 ~i~~~~~~~i~~i~~G~~~t~~l~~~g~v~~w 335 (380)
.+ ..+.+.-++.+.++=+++|.||.-
T Consensus 219 si------~av~lDpae~~~yiGt~~G~I~~~ 244 (476)
T KOG0646|consen 219 SI------KAVALDPAERVVYIGTEEGKIFQN 244 (476)
T ss_pred cc------eeEEEcccccEEEecCCcceEEee
Confidence 32 344455677777777778777764
No 26
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=86.72 E-value=20 Score=40.42 Aligned_cols=68 Identities=12% Similarity=0.099 Sum_probs=46.7
Q ss_pred CCCccEEEEccCce-EEEEeCCCCEEE-----EeCCCCCCccCCCCCCccccEEecccCCCcEEEEEecCCeEEEEeeCC
Q 016940 257 LNLQPVVVAAGAWH-AAVVGQDGRVCT-----WGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDG 330 (380)
Q Consensus 257 ~~~~i~~i~~G~~h-~~~lt~~g~vy~-----wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~t~~l~~~g 330 (380)
...+|..|+.=..| -+|+|.+|+||. |=.+..+ .......+++..+.+.++..+....+|...+.-++
T Consensus 742 l~G~ik~l~lD~~~nL~Alt~~G~Lf~~~k~~WQ~~~~~------~~~~~~W~~v~lP~~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 742 LSGEIKDLALDEKQNLYALTSTGELFRLPKEAWQGNAEG------DQMAAKWQKVALPDEQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred CCcchhheeeccccceeEecCCCceeecCHHHhhCcccC------CccccCceeccCCCCCchhhhhcCCCCceEEEecC
Confidence 45578889887775 457899999997 4333322 11234555666566778999999999988887554
No 27
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=85.58 E-value=26 Score=31.35 Aligned_cols=38 Identities=18% Similarity=0.360 Sum_probs=26.3
Q ss_pred ccCCccEEEEeeCCCeEEEEecCCcEEEEEeCCCCc-cCC
Q 016940 145 SLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDAR-LGH 183 (380)
Q Consensus 145 ~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gq-lg~ 183 (380)
...+.+|-+++.-+.|. +...+|+||+|-|++... ++.
T Consensus 59 qahdgpiy~~~f~d~~L-ls~gdG~V~gw~W~E~~es~~~ 97 (325)
T KOG0649|consen 59 QAHDGPIYYLAFHDDFL-LSGGDGLVYGWEWNEEEESLAT 97 (325)
T ss_pred cccCCCeeeeeeehhhe-eeccCceEEEeeehhhhhhccc
Confidence 34456677777765554 445679999999998665 443
No 28
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=85.18 E-value=51 Score=34.25 Aligned_cols=250 Identities=16% Similarity=0.120 Sum_probs=123.8
Q ss_pred ceEEecCCC--eEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeCCCceEEEe--cCCcEEEee
Q 016940 45 NSQAIAGPG--HSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLIS--DAGQVYAFG 120 (380)
Q Consensus 45 i~~i~~G~~--~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g~~~~~~lt--~~G~vy~~G 120 (380)
|-+.+.+.+ .++.+...|+=.++|...-|||..=+=....+-.+.+.-. .+|..++-+.+-.++.| +||+|=.|-
T Consensus 300 ih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~-~~i~~l~YSpDgq~iaTG~eDgKVKvWn 378 (893)
T KOG0291|consen 300 IHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHS-DRITSLAYSPDGQLIATGAEDGKVKVWN 378 (893)
T ss_pred EEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccc-cceeeEEECCCCcEEEeccCCCcEEEEe
Confidence 334455544 3445566788888998888888763322222211211111 15666666666555554 677777775
Q ss_pred CCCCCCCccCCCCceeecCCeeecccCCccEEEEeeCCCeEEEEecCCcEEEEEeCCCCccCCCCCCCcccccccccccC
Q 016940 121 KDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLE 200 (380)
Q Consensus 121 ~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~ 200 (380)
..+. ...-+.-+.-.....++.+.-.+..+...-||.|-+|-...|-..- ....|.+++
T Consensus 379 ~~Sg------------fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfR-----Tft~P~p~Q---- 437 (893)
T KOG0291|consen 379 TQSG------------FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFR-----TFTSPEPIQ---- 437 (893)
T ss_pred ccCc------------eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceee-----eecCCCcee----
Confidence 4321 0111111222344566677777777778889999988655432111 112233333
Q ss_pred CCCEEEEEec--CCceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEcc--CceEEEEeC
Q 016940 201 NIPVVQIAAG--YCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAG--AWHAAVVGQ 276 (380)
Q Consensus 201 ~~~i~~i~~g--~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G--~~h~~~lt~ 276 (380)
...++.- ..-.++-.. |--+||+|---+ | ..+..+.....+|..++-. ..+-+-.+=
T Consensus 438 ---fscvavD~sGelV~AG~~--d~F~IfvWS~qT-G-------------qllDiLsGHEgPVs~l~f~~~~~~LaS~SW 498 (893)
T KOG0291|consen 438 ---FSCVAVDPSGELVCAGAQ--DSFEIFVWSVQT-G-------------QLLDILSGHEGPVSGLSFSPDGSLLASGSW 498 (893)
T ss_pred ---eeEEEEcCCCCEEEeecc--ceEEEEEEEeec-C-------------eeeehhcCCCCcceeeEEccccCeEEeccc
Confidence 2222222 222222222 333677774211 1 1222222223233332222 222222333
Q ss_pred CCCEEEEeCCCCCCccCCCCCCccccEEecccCCCcEEEEEecCCeEEEEeeCCCEEEEECCCCCCCCC
Q 016940 277 DGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGH 345 (380)
Q Consensus 277 ~g~vy~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~t~~l~~~g~v~~wG~n~~gqlG~ 345 (380)
|..|-.|---... | ...|.++ .++.--+.+.--+.-.++.|-||+|-.|-.++..|+|.
T Consensus 499 DkTVRiW~if~s~--~------~vEtl~i--~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~ 557 (893)
T KOG0291|consen 499 DKTVRIWDIFSSS--G------TVETLEI--RSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGS 557 (893)
T ss_pred cceEEEEEeeccC--c------eeeeEee--ccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeecc
Confidence 4555556432210 0 1222222 23322333444477788999999999999999999954
No 29
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=83.80 E-value=6.5 Score=34.73 Aligned_cols=26 Identities=12% Similarity=0.199 Sum_probs=22.9
Q ss_pred ccEEEEeeCCCeEEEEecCCcEEEEE
Q 016940 149 IFVVQAAIGNFFTAVLSREGRVYTFS 174 (380)
Q Consensus 149 ~~i~~i~~g~~~~~~lt~~G~vy~~G 174 (380)
.++..+.|..++.+++|++|.+|+|=
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWn 38 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWN 38 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEE
Confidence 45788999999999999999999883
No 30
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=82.72 E-value=8.9 Score=33.85 Aligned_cols=31 Identities=10% Similarity=0.203 Sum_probs=26.7
Q ss_pred CCCccEEEEccCceEEEEeCCCCEEEEeCCC
Q 016940 257 LNLQPVVVAAGAWHAAVVGQDGRVCTWGWGR 287 (380)
Q Consensus 257 ~~~~i~~i~~G~~h~~~lt~~g~vy~wG~n~ 287 (380)
.+.+++.+.|-..+-+++|.+|.+|+|--..
T Consensus 11 Lgs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~ 41 (219)
T PF07569_consen 11 LGSPVSFLECNGSYLLAITSSGLLYVWNLKK 41 (219)
T ss_pred cCCceEEEEeCCCEEEEEeCCCeEEEEECCC
Confidence 4557888999999999999999999997644
No 31
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=79.92 E-value=25 Score=35.99 Aligned_cols=22 Identities=18% Similarity=0.166 Sum_probs=16.9
Q ss_pred EEccCceEEEEeCCCCEEEEeC
Q 016940 264 VAAGAWHAAVVGQDGRVCTWGW 285 (380)
Q Consensus 264 i~~G~~h~~~lt~~g~vy~wG~ 285 (380)
......+.-+...++++|+-|-
T Consensus 509 m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 509 MTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred CccccccccEEEECCEEEEEec
Confidence 4446667777788999999986
No 32
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=79.58 E-value=64 Score=31.45 Aligned_cols=236 Identities=13% Similarity=0.092 Sum_probs=106.8
Q ss_pred cEEEEEeCCCceEEE--ecCCcEEEeeCCCCCCCccCCCCceeecCCeeecccCCccEEEEeeCCCeEEEE--ecCCcEE
Q 016940 96 RIIQAAAGAGRTMLI--SDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVL--SREGRVY 171 (380)
Q Consensus 96 ~I~~V~~g~~~~~~l--t~~G~vy~~G~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~~~~l--t~~G~vy 171 (380)
++..+++...-.+++ |..|++|.|-.++---|-.- -.. -..|..+....+-.+++ .+||.|+
T Consensus 83 ~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~------------~aH--YQ~ITcL~fs~dgs~iiTgskDg~V~ 148 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVL------------SAH--YQSITCLKFSDDGSHIITGSKDGAVL 148 (476)
T ss_pred ceeeeecCCCceEEEeecccCcEEEEEeccccHHHHH------------Hhh--ccceeEEEEeCCCcEEEecCCCccEE
Confidence 567776665544444 47899999976432111100 001 12244444444444444 4688999
Q ss_pred EEEeCCCCccCCCCCCC--cccccccccccCCCCEEEEEecCC--ceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCC
Q 016940 172 TFSWGNDARLGHHTEPN--DVEPHPLLGTLENIPVVQIAAGYC--YLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKH 247 (380)
Q Consensus 172 ~~G~n~~gqlg~~~~~~--~~~p~~v~~~~~~~~i~~i~~g~~--~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~ 247 (380)
+|---. .-+... ...|..... --..+|+++.+|.. -+.+++...|. .+-+|--..
T Consensus 149 vW~l~~-----lv~a~~~~~~~p~~~f~-~HtlsITDl~ig~Gg~~~rl~TaS~D~-t~k~wdlS~-------------- 207 (476)
T KOG0646|consen 149 VWLLTD-----LVSADNDHSVKPLHIFS-DHTLSITDLQIGSGGTNARLYTASEDR-TIKLWDLSL-------------- 207 (476)
T ss_pred EEEEEe-----ecccccCCCccceeeec-cCcceeEEEEecCCCccceEEEecCCc-eEEEEEecc--------------
Confidence 884322 111111 112222222 22345888777754 44444544455 666663111
Q ss_pred Ceeeeee-ecCCCccEEEEccCceEEEEeCCCCEEEEeCCCCCCccCCCCCCccccEEecccCCCcEEEEEecCC-----
Q 016940 248 PRLIEQF-QLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDY----- 321 (380)
Q Consensus 248 p~~~~~~-~~~~~~i~~i~~G~~h~~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~~----- 321 (380)
-..+..+ .+...+-+-+.-+..+.++=+++|++|..=.+... | ...... ++...+.+.++. +..|..
T Consensus 208 g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~--~--~~~~v~--~k~~~~~~t~~~-~~~Gh~~~~~I 280 (476)
T KOG0646|consen 208 GVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLS--G--QSAGVN--QKGRHEENTQIN-VLVGHENESAI 280 (476)
T ss_pred ceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCC--c--cccccc--ccccccccceee-eeccccCCcce
Confidence 1111111 11222333455566666777778887754332211 0 000000 111112222222 222222
Q ss_pred eEEEEeeCCCEEEEECCCCCCCCCCCCCCCCccchh--hhhhhhheee---eeecccc
Q 016940 322 TTFVVSEDGDVYSFGCGESASLGHNAIADGQVCSLL--FLSIFQYLQI---WLNLSSY 374 (380)
Q Consensus 322 ~t~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~ 374 (380)
.++++..||.+..-|+- .|+...=+....+-..++ .-+++.+++| |+..+.+
T Consensus 281 TcLais~DgtlLlSGd~-dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~ 337 (476)
T KOG0646|consen 281 TCLAISTDGTLLLSGDE-DGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGIILF 337 (476)
T ss_pred eEEEEecCccEEEeeCC-CCCEEEEecchHHHHHHHhhhccccceeEeeccccceecc
Confidence 35666667777776654 334433333333322222 2346777777 7665553
No 33
>PHA03098 kelch-like protein; Provisional
Probab=78.92 E-value=62 Score=32.61 Aligned_cols=17 Identities=12% Similarity=0.204 Sum_probs=11.5
Q ss_pred ceEEEecCCcEEEeeCCC
Q 016940 106 RTMLISDAGQVYAFGKDS 123 (380)
Q Consensus 106 ~~~~lt~~G~vy~~G~n~ 123 (380)
|+++. -+|+||.+|...
T Consensus 336 ~~~~~-~~~~lyv~GG~~ 352 (534)
T PHA03098 336 PGVTV-FNNRIYVIGGIY 352 (534)
T ss_pred ceEEE-ECCEEEEEeCCC
Confidence 44443 468999999643
No 34
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=78.92 E-value=77 Score=33.63 Aligned_cols=68 Identities=18% Similarity=0.244 Sum_probs=40.8
Q ss_pred CCCeEEEEecCCcEEEEEeCCCCccCCCCCCCc-ccccccccccCCCCEEEEEecCCceEEEEEeCCCCE--EEEEe
Q 016940 157 GNFFTAVLSREGRVYTFSWGNDARLGHHTEPND-VEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMA--VYSVG 230 (380)
Q Consensus 157 g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~-~~p~~v~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~--vy~~G 230 (380)
+....++++.+|+ |.+-.+.++-.-....... ..|.-+. .....|..|++-.+|.+.-+. ++ . +|-++
T Consensus 14 ~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~ti~--~~g~~v~~ia~~s~~f~~~s~--~~-tv~~y~fp 84 (933)
T KOG1274|consen 14 GGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPETID--ISGELVSSIACYSNHFLTGSE--QN-TVLRYKFP 84 (933)
T ss_pred CceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCchhh--ccCceeEEEeecccceEEeec--cc-eEEEeeCC
Confidence 3455677888887 4444444443333332222 4454443 256779999999998888887 66 5 45444
No 35
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=78.49 E-value=54 Score=30.42 Aligned_cols=161 Identities=10% Similarity=0.083 Sum_probs=72.7
Q ss_pred EeeeeceEEecCCCeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeC--CCceEEEecCCcEE
Q 016940 40 CCRRENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAG--AGRTMLISDAGQVY 117 (380)
Q Consensus 40 ~~~~~i~~i~~G~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g--~~~~~~lt~~G~vy 117 (380)
-+..+|+.|..-+.+.+++++. ++|+|--.++ |+++..++ .... +-.++.-+.+..+.
T Consensus 92 ~f~~~I~~V~l~r~riVvvl~~-~I~VytF~~n-------------~k~l~~~e------t~~NPkGlC~~~~~~~k~~L 151 (346)
T KOG2111|consen 92 SFNSEIKAVKLRRDRIVVVLEN-KIYVYTFPDN-------------PKLLHVIE------TRSNPKGLCSLCPTSNKSLL 151 (346)
T ss_pred EeccceeeEEEcCCeEEEEecC-eEEEEEcCCC-------------hhheeeee------cccCCCceEeecCCCCceEE
Confidence 4556777777777777777765 3555432211 11111100 0000 01122223445677
Q ss_pred EeeCCCCCCCccCCCCceeecCCeeecccCCccEEEEeeCCCeEEEEecCCcEEEEEeCCCCccC-CCCCCCcccccccc
Q 016940 118 AFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLG-HHTEPNDVEPHPLL 196 (380)
Q Consensus 118 ~~G~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg-~~~~~~~~~p~~v~ 196 (380)
++.....||+-.-+-.......|..|+ ..-+.-.+++|+.+|.+.+-+.- .|-|= ..++.+...-.++.
T Consensus 152 afPg~k~GqvQi~dL~~~~~~~p~~I~---------AH~s~Iacv~Ln~~Gt~vATaSt-kGTLIRIFdt~~g~~l~E~R 221 (346)
T KOG2111|consen 152 AFPGFKTGQVQIVDLASTKPNAPSIIN---------AHDSDIACVALNLQGTLVATAST-KGTLIRIFDTEDGTLLQELR 221 (346)
T ss_pred EcCCCccceEEEEEhhhcCcCCceEEE---------cccCceeEEEEcCCccEEEEecc-CcEEEEEEEcCCCcEeeeee
Confidence 777666666543321111111233332 22223345677777776654322 12111 11111111111221
Q ss_pred cccCCCCEEEEEecCCceEEEEEeCCCCEEEEEec
Q 016940 197 GTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGC 231 (380)
Q Consensus 197 ~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~ 231 (380)
--.....|-.|+-+.+.+......+.| +|-.++-
T Consensus 222 RG~d~A~iy~iaFSp~~s~LavsSdKg-TlHiF~l 255 (346)
T KOG2111|consen 222 RGVDRADIYCIAFSPNSSWLAVSSDKG-TLHIFSL 255 (346)
T ss_pred cCCchheEEEEEeCCCccEEEEEcCCC-eEEEEEe
Confidence 113334577887777766655554577 8877764
No 36
>PLN02153 epithiospecifier protein
Probab=78.24 E-value=61 Score=30.49 Aligned_cols=16 Identities=25% Similarity=0.260 Sum_probs=11.9
Q ss_pred CceEEEEEeCCCCEEEEEec
Q 016940 212 CYLLALACQPSGMAVYSVGC 231 (380)
Q Consensus 212 ~~~~~l~~~~~G~~vy~~G~ 231 (380)
.|+++.. ++ +||++|-
T Consensus 130 ~~~~~~~---~~-~iyv~GG 145 (341)
T PLN02153 130 FHSMASD---EN-HVYVFGG 145 (341)
T ss_pred eeEEEEE---CC-EEEEECC
Confidence 5666655 77 9999985
No 37
>PHA02713 hypothetical protein; Provisional
Probab=78.07 E-value=60 Score=33.12 Aligned_cols=14 Identities=14% Similarity=-0.068 Sum_probs=10.4
Q ss_pred EEeCCCCEEEEeCC
Q 016940 273 VVGQDGRVCTWGWG 286 (380)
Q Consensus 273 ~lt~~g~vy~wG~n 286 (380)
+..-+|+||+.|-.
T Consensus 459 ~~~~~~~IYv~GG~ 472 (557)
T PHA02713 459 VVSHKDDIYVVCDI 472 (557)
T ss_pred EEEECCEEEEEeCC
Confidence 44557899999853
No 38
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=77.40 E-value=74 Score=31.01 Aligned_cols=69 Identities=17% Similarity=0.197 Sum_probs=40.7
Q ss_pred CcEEEEEeC-CCceEEEecCCcEEEeeCCCCCCCccCCCCceeecCCeeec--ccCCccEEEEeeCCCeEEEEecCCcEE
Q 016940 95 IRIIQAAAG-AGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVE--SLKNIFVVQAAIGNFFTAVLSREGRVY 171 (380)
Q Consensus 95 ~~I~~V~~g-~~~~~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~~~p~~v~--~~~~~~i~~i~~g~~~~~~lt~~G~vy 171 (380)
.+|+.+.-. ..+.++|+++|.++..- -.|+. ....+..+. ...+.++-.+..+.+=.++||+++++|
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~--~~G~~--------~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~ 150 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYD--LFGEF--------QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFY 150 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEe--CCCce--------eechhhhccccCcccccccccccCCCCEEEECCCCeEE
Confidence 477777654 45788899999888763 33332 111222221 112233434455555678899999999
Q ss_pred EE
Q 016940 172 TF 173 (380)
Q Consensus 172 ~~ 173 (380)
..
T Consensus 151 ~v 152 (410)
T PF04841_consen 151 VV 152 (410)
T ss_pred EE
Confidence 66
No 39
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=75.44 E-value=81 Score=30.46 Aligned_cols=77 Identities=14% Similarity=0.066 Sum_probs=47.0
Q ss_pred cCCCCEEEEEecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEccCceEEEE--eC
Q 016940 199 LENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVV--GQ 276 (380)
Q Consensus 199 ~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~h~~~l--t~ 276 (380)
....+|.+++-+.+.-++|..-.+. ++..|--- ....+.+...-..-..-|.+.+.|.+-.++. ++
T Consensus 393 se~~~its~~iS~d~k~~LvnL~~q-ei~LWDl~-----------e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSE 460 (519)
T KOG0293|consen 393 SEEQPITSFSISKDGKLALVNLQDQ-EIHLWDLE-----------ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSE 460 (519)
T ss_pred cccCceeEEEEcCCCcEEEEEcccC-eeEEeecc-----------hhhHHHHhhcccccceEEEeccCCCCcceEEecCC
Confidence 3456788888888877787776677 89999421 1111111111111122355677777755555 58
Q ss_pred CCCEEEEeCCC
Q 016940 277 DGRVCTWGWGR 287 (380)
Q Consensus 277 ~g~vy~wG~n~ 287 (380)
|++||.|-.-.
T Consensus 461 D~kvyIWhr~s 471 (519)
T KOG0293|consen 461 DSKVYIWHRIS 471 (519)
T ss_pred CceEEEEEccC
Confidence 89999998744
No 40
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=75.21 E-value=5.2 Score=23.72 Aligned_cols=25 Identities=36% Similarity=0.425 Sum_probs=21.3
Q ss_pred eeceEEecCC-CeEEEEecCCcEEEe
Q 016940 43 RENSQAIAGP-GHSIAVTSKGVVYSF 67 (380)
Q Consensus 43 ~~i~~i~~G~-~~~~~l~~~G~v~~~ 67 (380)
.++++|++|. ....+++.+|++|..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 4688999999 888899999999863
No 41
>PLN02153 epithiospecifier protein
Probab=75.16 E-value=74 Score=29.91 Aligned_cols=18 Identities=39% Similarity=0.512 Sum_probs=12.3
Q ss_pred CceEEEecCCcEEEeeCCC
Q 016940 105 GRTMLISDAGQVYAFGKDS 123 (380)
Q Consensus 105 ~~~~~lt~~G~vy~~G~n~ 123 (380)
.|++++ .++++|.+|--.
T Consensus 130 ~~~~~~-~~~~iyv~GG~~ 147 (341)
T PLN02153 130 FHSMAS-DENHVYVFGGVS 147 (341)
T ss_pred eeEEEE-ECCEEEEECCcc
Confidence 456555 457899998643
No 42
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=74.45 E-value=87 Score=30.39 Aligned_cols=68 Identities=12% Similarity=0.049 Sum_probs=40.8
Q ss_pred CeEEEEecCCcEEEEEeCCCCccCCCCCCCcccccccccccCCCCEEEEEecCCceEEEEEeCCCCEEEEEe
Q 016940 159 FFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVG 230 (380)
Q Consensus 159 ~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G 230 (380)
.+++++-.||-+|+-|.- ++++-..+........+.. ....+|+.|+-+.+--...+..+|+ .|.+|-
T Consensus 350 ~ts~~fHpDgLifgtgt~-d~~vkiwdlks~~~~a~Fp--ght~~vk~i~FsENGY~Lat~add~-~V~lwD 417 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTP-DGVVKIWDLKSQTNVAKFP--GHTGPVKAISFSENGYWLATAADDG-SVKLWD 417 (506)
T ss_pred eEEeeEcCCceEEeccCC-CceEEEEEcCCccccccCC--CCCCceeEEEeccCceEEEEEecCC-eEEEEE
Confidence 567778888988844321 4555544433333222222 2345688888886655555555588 899995
No 43
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=74.16 E-value=66 Score=28.85 Aligned_cols=82 Identities=16% Similarity=0.193 Sum_probs=43.0
Q ss_pred CCCCEEEEEecCCceEEEEEeCCCCEEEEEecCCCCc-cCCCCCCCCCCCeeeeeeecCCCccEEEEccCceEEEEeCCC
Q 016940 200 ENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGK-LGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDG 278 (380)
Q Consensus 200 ~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gq-lg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g 278 (380)
.+.+|-.++....|.+.-. || .||.|-.|+... ++.........|.......-+.++-..+....+..+..--|+
T Consensus 61 hdgpiy~~~f~d~~Lls~g---dG-~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~ 136 (325)
T KOG0649|consen 61 HDGPIYYLAFHDDFLLSGG---DG-LVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDG 136 (325)
T ss_pred cCCCeeeeeeehhheeecc---Cc-eEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCe
Confidence 4556777777766655544 89 999999988766 444433333344443222212222222332333333333455
Q ss_pred CEEEEeC
Q 016940 279 RVCTWGW 285 (380)
Q Consensus 279 ~vy~wG~ 285 (380)
.+|.|-.
T Consensus 137 ~~y~~dl 143 (325)
T KOG0649|consen 137 VIYQVDL 143 (325)
T ss_pred EEEEEEe
Confidence 5666643
No 44
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=74.15 E-value=1.4e+02 Score=32.64 Aligned_cols=169 Identities=10% Similarity=0.039 Sum_probs=82.1
Q ss_pred cCCCeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEe--CCCceEEEecCCcEEEeeCCCCCCC
Q 016940 50 AGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAA--GAGRTMLISDAGQVYAFGKDSFGEA 127 (380)
Q Consensus 50 ~G~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~--g~~~~~~lt~~G~vy~~G~n~~gql 127 (380)
.-....+.++.+|-+-..-...+..-+.+ +..+....+..+..+.. ..++.+++|+.|++|..-...--+.
T Consensus 514 ~~E~v~v~lS~~GyIKr~~~~~~~~q~~g-------~~~~~~ke~D~i~~~~~~~T~d~LL~FTn~Gkvy~ikvy~IPe~ 586 (957)
T PRK13979 514 VVEDVVITLSNEGFIKRIPLKSYNRSNSN-------VEDIEYREGDFNKFLIQSNTKDTLLIFTDKGNMYQIKGINIPEF 586 (957)
T ss_pred CCcceEEEEecCCEEEEcccccccccccc-------ccccccCCCCceEEEEEEcCCCEEEEEECCCeEEEEEeeeCCCC
Confidence 34556678888886655433322211111 11121223445665544 4455788899999999865433222
Q ss_pred ccCCCCceeecCCeeec-c-cCCccEEEEeeCCC-----eEEEEecCCcEEEEEeCCCCccCCCCCCCcccccccccccC
Q 016940 128 EYGVQGTKLVTSPQLVE-S-LKNIFVVQAAIGNF-----FTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLE 200 (380)
Q Consensus 128 G~~~~~~~~~~~p~~v~-~-~~~~~i~~i~~g~~-----~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~ 200 (380)
... ....+.-..++ . ..+.+|+.+.+-.+ +.+++|.+|.+.-.-...+.. .. .. ...-....
T Consensus 587 ~~~---~~G~~I~nll~~~~~~~EkIv~i~~~~ef~~~~~lv~~Tk~G~VKrt~L~ef~~------~r-~~-~~aikL~e 655 (957)
T PRK13979 587 KWK---EKGERLDEIIKGIDLESEKIIEAYSIEDFTPQKDFIFITDSGGIKKTSLDKFVT------NY-TK-LMALKLKK 655 (957)
T ss_pred CcC---CCCeEHHHhhhccCCCCCeEEEEEEeccCCCCCEEEEEECCCeEEEEehhhccc------cc-cc-eEEEEcCC
Confidence 111 11111111121 1 13566777766532 467889999888543222110 00 01 11111122
Q ss_pred CCCEEEEEecC-----CceEEEEEeCCCCEEEEEecCCCCccCC
Q 016940 201 NIPVVQIAAGY-----CYLLALACQPSGMAVYSVGCGLGGKLGH 239 (380)
Q Consensus 201 ~~~i~~i~~g~-----~~~~~l~~~~~G~~vy~~G~n~~gqlg~ 239 (380)
+..++.+.... .+.+++++ +| ...-+-.+.-..+|.
T Consensus 656 ~DeLV~v~~~~~~~~~~~Iil~Tk--~G-~airF~~~eVr~mGR 696 (957)
T PRK13979 656 GEKLIKVKLVDRTREEKFIKIKTK--KG-LSFTVEEPELEPVDR 696 (957)
T ss_pred CCEEEEEEEcCCCCCCCEEEEEeC--CC-cEEEEEHHHCcccCC
Confidence 34455544433 24677776 78 776666555544444
No 45
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=73.69 E-value=1e+02 Score=31.65 Aligned_cols=57 Identities=16% Similarity=0.064 Sum_probs=32.6
Q ss_pred EEeCCCCEEEEeCCCCCCccCCCCCCccccEEecccCCCc---EEEEEecCCeEEEEeeCCCEEEEEC
Q 016940 273 VVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVK---AIHVATGDYTTFVVSEDGDVYSFGC 337 (380)
Q Consensus 273 ~lt~~g~vy~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~---i~~i~~G~~~t~~l~~~g~v~~wG~ 337 (380)
+.+-+++||+.|-... . .. ... .+.-.+...+ +..+.....+..+..-++++|+-|-
T Consensus 471 ~a~~~~~iYvvGG~~~-~---~~---~~~-VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 471 VAVLNGKIYVVGGFDG-T---SA---LSS-VERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred EEEECCEEEEECCccC-C---Cc---cce-EEEEcCCCCceeEcccCccccccccEEEECCEEEEEec
Confidence 4555889999996442 1 00 111 1111111112 2234557778888889999999986
No 46
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=73.53 E-value=30 Score=31.58 Aligned_cols=138 Identities=18% Similarity=0.229 Sum_probs=68.5
Q ss_pred CCeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeC---CCceEEEecCCcEEEeeCC-CCCCC
Q 016940 52 PGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAG---AGRTMLISDAGQVYAFGKD-SFGEA 127 (380)
Q Consensus 52 ~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g---~~~~~~lt~~G~vy~~G~n-~~gql 127 (380)
.-|.++...||.||.-+ .++-.+|+.+... + +++.+..| .-|.+++..||..|.+-.. .-+.+
T Consensus 63 ap~dvapapdG~VWft~---qg~gaiGhLdP~t---------G-ev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~ 129 (353)
T COG4257 63 APFDVAPAPDGAVWFTA---QGTGAIGHLDPAT---------G-EVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRL 129 (353)
T ss_pred CccccccCCCCceEEec---CccccceecCCCC---------C-ceEEEecCCCCCCceEEECCCCCeeEecCcceeEEe
Confidence 34667778899999544 3333333333221 1 33333322 3367777888888877432 11111
Q ss_pred ccCCCCceeecCCeeecccCCccEEEEeeCCCeEEEEecCCcEEEEEeCC-CCccCCCCCCCcccccccccccCCCCEEE
Q 016940 128 EYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGN-DARLGHHTEPNDVEPHPLLGTLENIPVVQ 206 (380)
Q Consensus 128 G~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~-~gqlg~~~~~~~~~p~~v~~~~~~~~i~~ 206 (380)
+-..-.......| .+..-+.-.+.+++.+|+||--|.+. +|+|--........|..
T Consensus 130 dpkt~evt~f~lp-----------~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP------------ 186 (353)
T COG4257 130 DPKTLEVTRFPLP-----------LEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP------------ 186 (353)
T ss_pred cCcccceEEeecc-----------cccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC------------
Confidence 1100001111111 12233445678899999999776543 34333222211111111
Q ss_pred EEecCCceEEEEEeCCCCEEEEE
Q 016940 207 IAAGYCYLLALACQPSGMAVYSV 229 (380)
Q Consensus 207 i~~g~~~~~~l~~~~~G~~vy~~ 229 (380)
.-+.-+.++.+. || +||.-
T Consensus 187 -qG~gpyGi~atp--dG-svwya 205 (353)
T COG4257 187 -QGGGPYGICATP--DG-SVWYA 205 (353)
T ss_pred -CCCCCcceEECC--CC-cEEEE
Confidence 123456667776 99 99876
No 47
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=70.80 E-value=69 Score=27.65 Aligned_cols=181 Identities=10% Similarity=0.003 Sum_probs=82.2
Q ss_pred CeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeCCC--ceEEEecCCcEEEeeCCCCCCCccC
Q 016940 53 GHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAG--RTMLISDAGQVYAFGKDSFGEAEYG 130 (380)
Q Consensus 53 ~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g~~--~~~~lt~~G~vy~~G~n~~gqlG~~ 130 (380)
...++...+|.++.|-..... ....+.. ....+..+..... ..++...+|.++.|-......
T Consensus 22 ~~l~~~~~~g~i~i~~~~~~~-----------~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~---- 85 (289)
T cd00200 22 KLLATGSGDGTIKVWDLETGE-----------LLRTLKG-HTGPVRDVAASADGTYLASGSSDKTIRLWDLETGEC---- 85 (289)
T ss_pred CEEEEeecCcEEEEEEeeCCC-----------cEEEEec-CCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccc----
Confidence 444555568899888644221 1111111 1123444544433 344455688888886542211
Q ss_pred CCCceeecCCeeecccCCccEEEEeeCCC-eEEEEec-CCcEEEEEeCCCCccCCCCCCCcccccccccccCCCCEEEEE
Q 016940 131 VQGTKLVTSPQLVESLKNIFVVQAAIGNF-FTAVLSR-EGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIA 208 (380)
Q Consensus 131 ~~~~~~~~~p~~v~~~~~~~i~~i~~g~~-~~~~lt~-~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i~ 208 (380)
...+. .....|..+....+ ..++... +|.|+.|-...... ...+. .....+..++
T Consensus 86 ---------~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----------~~~~~--~~~~~i~~~~ 142 (289)
T cd00200 86 ---------VRTLT-GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC-----------LTTLR--GHTDWVNSVA 142 (289)
T ss_pred ---------eEEEe-ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEE-----------EEEec--cCCCcEEEEE
Confidence 11111 11123555554443 3444444 78888774331100 00111 1123466666
Q ss_pred ecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEccCc--eEEEEeCCCCEEEEeCC
Q 016940 209 AGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAW--HAAVVGQDGRVCTWGWG 286 (380)
Q Consensus 209 ~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~--h~~~lt~~g~vy~wG~n 286 (380)
......+++....+| .|+.|-.+.. ..+..+......+..+....+ ..++...+|.++.|-..
T Consensus 143 ~~~~~~~l~~~~~~~-~i~i~d~~~~--------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~ 207 (289)
T cd00200 143 FSPDGTFVASSSQDG-TIKLWDLRTG--------------KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS 207 (289)
T ss_pred EcCcCCEEEEEcCCC-cEEEEEcccc--------------ccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECC
Confidence 665444444443367 8888853211 111111112223334433332 55555667888888654
Q ss_pred C
Q 016940 287 R 287 (380)
Q Consensus 287 ~ 287 (380)
.
T Consensus 208 ~ 208 (289)
T cd00200 208 T 208 (289)
T ss_pred C
Confidence 3
No 48
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=68.58 E-value=10 Score=22.41 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=20.9
Q ss_pred ccEEEEeeCC-CeEEEEecCCcEEE
Q 016940 149 IFVVQAAIGN-FFTAVLSREGRVYT 172 (380)
Q Consensus 149 ~~i~~i~~g~-~~~~~lt~~G~vy~ 172 (380)
..+++|++|. +...+++.+|.||.
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~ 32 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYR 32 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEE
Confidence 3589999999 88899999999994
No 49
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=64.76 E-value=2.2e+02 Score=31.16 Aligned_cols=30 Identities=23% Similarity=0.297 Sum_probs=24.5
Q ss_pred CccEEEEeeCCCe--EEEEecCCcEEEEEeCC
Q 016940 148 NIFVVQAAIGNFF--TAVLSREGRVYTFSWGN 177 (380)
Q Consensus 148 ~~~i~~i~~g~~~--~~~lt~~G~vy~~G~n~ 177 (380)
...|.+|+.+.++ .++++.+|.|..|-+..
T Consensus 426 ~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 426 PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred CCCcEEEEEeCCCCeEEEEECCCCEEEEEecC
Confidence 3568999998888 79999999988887655
No 50
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=61.12 E-value=2.4e+02 Score=30.33 Aligned_cols=217 Identities=12% Similarity=0.007 Sum_probs=103.4
Q ss_pred ecCCCeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeC-----CCceEEEecCCcEEEeeCCC
Q 016940 49 IAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAG-----AGRTMLISDAGQVYAFGKDS 123 (380)
Q Consensus 49 ~~G~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g-----~~~~~~lt~~G~vy~~G~n~ 123 (380)
+...++.+++|++|++|..-...--..+.... -......++...+++|+.+.+- ....+++|++|.+--.-.++
T Consensus 543 ~~t~d~LllfTs~Grv~~l~~~~IP~~~r~~~-G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~ 621 (800)
T TIGR01063 543 ASTHDYLLFFTNRGKVYWLKVYQIPEASRTAK-GKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTE 621 (800)
T ss_pred ecCCCeEEEEeCCCcEEEEEhhhCcCCCcCCC-CcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHH
Confidence 45566788999999999984322211111000 0001112233356678877652 23568889999776654433
Q ss_pred CCCCccCCCCceeecCCee-ecccCCccEEEEe--eCCCeEEEEecCCcEEEEEeCCCCccCCCCCCCcccccccccccC
Q 016940 124 FGEAEYGVQGTKLVTSPQL-VESLKNIFVVQAA--IGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLE 200 (380)
Q Consensus 124 ~gqlG~~~~~~~~~~~p~~-v~~~~~~~i~~i~--~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~ 200 (380)
+-.... .-.. +..-.+..++.+. ...++.+++|++|++|..-...-...+........ +. ...
T Consensus 622 ~~~~~r---------~G~~aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~----i~-L~~ 687 (800)
T TIGR01063 622 FSNIRS---------NGIIAIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRG----IK-LKN 687 (800)
T ss_pred hhhhcc---------CCcccccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCeec----cc-CCC
Confidence 211000 0000 1111233454433 23456889999999997765554444433322111 11 123
Q ss_pred CCCEEEEEec--CCceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEE--EccCceEEEEeC
Q 016940 201 NIPVVQIAAG--YCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVV--AAGAWHAAVVGQ 276 (380)
Q Consensus 201 ~~~i~~i~~g--~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i--~~G~~h~~~lt~ 276 (380)
+..|+.+..- ..+.+++++ +| .+.-.-...+.....+ ........+...+..++.+ ....+..+++|+
T Consensus 688 ~E~Vv~~~~v~~~~~ll~vT~--~G-~~Kr~~l~e~~~~~R~-----~kGv~~ikl~~~~d~lv~~~~v~~~~~v~liT~ 759 (800)
T TIGR01063 688 EDFVVSLLVVSEESYLLIVTE--NG-YGKRTSIEEYRETSRG-----GKGVKSIKITDRNGQVVGAIAVDDDDELMLITS 759 (800)
T ss_pred CCEEEEEEEeccccEEEEEec--CC-cEEEEEHHHccccCCC-----CcceEEEEccCCCCeEEEEEEecCCCeEEEEec
Confidence 4556665543 224555665 66 5554432222111110 0111111111111233332 224446788888
Q ss_pred CCCEEEEeCCCC
Q 016940 277 DGRVCTWGWGRY 288 (380)
Q Consensus 277 ~g~vy~wG~n~~ 288 (380)
+|++..+-.++-
T Consensus 760 ~G~~lrf~~~eI 771 (800)
T TIGR01063 760 AGKLIRTSVQDV 771 (800)
T ss_pred CCeEEEeeHhhC
Confidence 898887766553
No 51
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=60.51 E-value=1.4e+02 Score=27.46 Aligned_cols=107 Identities=21% Similarity=0.312 Sum_probs=60.8
Q ss_pred eceEEecCCC---eEEEEecCCcEEEeeCC-CCCCcCCCCCCCccceeeccCCCCCcEEEEEeCCCceEEEecCCcEEEe
Q 016940 44 ENSQAIAGPG---HSIAVTSKGVVYSFGSN-SSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAF 119 (380)
Q Consensus 44 ~i~~i~~G~~---~~~~l~~~G~v~~~G~n-~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g~~~~~~lt~~G~vy~~ 119 (380)
+++.+..|.. |.+++..||..|.+-.. .-+.++.........|.+ .+..-+.-.+.+++.+|+||.-
T Consensus 94 ev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp---------~~~a~~nlet~vfD~~G~lWFt 164 (353)
T COG4257 94 EVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLP---------LEHADANLETAVFDPWGNLWFT 164 (353)
T ss_pred ceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeecc---------cccCCCcccceeeCCCccEEEe
Confidence 6777777654 78999999999998654 222222222222222222 2223445678999999999999
Q ss_pred eCC-CCCCCccCCCCceeecCCeeecccCCccEEEEeeCCCeEEEEecCCcEEEE
Q 016940 120 GKD-SFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTF 173 (380)
Q Consensus 120 G~n-~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~~~~lt~~G~vy~~ 173 (380)
|.+ .+|.|--.....+....| . -+.-.-++.|-+|+||.-
T Consensus 165 ~q~G~yGrLdPa~~~i~vfpaP------q--------G~gpyGi~atpdGsvwya 205 (353)
T COG4257 165 GQIGAYGRLDPARNVISVFPAP------Q--------GGGPYGICATPDGSVWYA 205 (353)
T ss_pred eccccceecCcccCceeeeccC------C--------CCCCcceEECCCCcEEEE
Confidence 863 344432211111111111 0 122356788999999954
No 52
>PRK05560 DNA gyrase subunit A; Validated
Probab=60.50 E-value=2.4e+02 Score=30.26 Aligned_cols=268 Identities=11% Similarity=0.038 Sum_probs=127.4
Q ss_pred CCCeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEE--EeCCCceEEEecCCcEEEeeCCCCCCCc
Q 016940 51 GPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQA--AAGAGRTMLISDAGQVYAFGKDSFGEAE 128 (380)
Q Consensus 51 G~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V--~~g~~~~~~lt~~G~vy~~G~n~~gqlG 128 (380)
-....++++++|.+-..-...+..-..+ ......+..-++..+..+ +...++.+++|+.|++|..-...--..+
T Consensus 497 ~E~v~vllS~~GyIKri~~~~~~~~~~~----~~g~~~~klKe~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~ 572 (805)
T PRK05560 497 EEDVVVTLTHGGYIKRTPLDEYRAQRRG----GKGVSGAKTKEDDFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEAS 572 (805)
T ss_pred CCCEEEEEeCCCEEEEcchhhhhhhccc----CCCccccccCCCCeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCCC
Confidence 4566788899997776533222100000 000111111133355544 4445567899999999999765332221
Q ss_pred cCCCCceeecCCeeecccCCccEEEEeeCC-----CeEEEEecCCcEEEEEeCCCCccCCCCCCCcccccccccccCCCC
Q 016940 129 YGVQGTKLVTSPQLVESLKNIFVVQAAIGN-----FFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIP 203 (380)
Q Consensus 129 ~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~-----~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~ 203 (380)
.. .........+...++.+|+.+.+-. ...+++|++|.+.-.-...+-....+ ...-+.. ..+..
T Consensus 573 ~~---~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~------G~~~ikL-ke~D~ 642 (805)
T PRK05560 573 RT---ARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSN------GIIAINL-DEGDE 642 (805)
T ss_pred cC---CCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccC------Cceeecc-CCCCE
Confidence 11 1111111123334566677776644 35788899997663322221110000 0000111 12233
Q ss_pred EEEEEec--CCceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEccC---ceEEEEeCCC
Q 016940 204 VVQIAAG--YCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGA---WHAAVVGQDG 278 (380)
Q Consensus 204 i~~i~~g--~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~---~h~~~lt~~g 278 (380)
++.+... ..+.+++|+ +| ++|.+-...--..+.... ...+..+ ..+.+|+.+.+.. .+.+++|+.|
T Consensus 643 lv~v~~~~~~d~lll~T~--~G-r~~r~~~~eIp~~gr~~~-----Gv~~i~L-~~~E~Vv~~~~v~~~~~~il~vTk~G 713 (805)
T PRK05560 643 LIGVRLTDGDDDILLATK--NG-KAIRFPESDVRPMGRTAR-----GVRGIKL-REGDEVVSMDVVREDSQEILTVTENG 713 (805)
T ss_pred EEEEEEeCCCCEEEEEEC--CC-cEEEEEhhhcCccCcccC-----CcccccC-CCCCEEEEEEEEcCCCcEEEEEEeCC
Confidence 4433333 345777777 88 988886544333332211 1122222 2344566554432 2577888888
Q ss_pred CEEEEeCCCCCCccCCCCCCccccEEecccC--CCcEEE--EEecCCeEEEEeeCCCEEEEECCCCCCCCCC
Q 016940 279 RVCTWGWGRYGCLGHGNEECESVPKVVQALN--DVKAIH--VATGDYTTFVVSEDGDVYSFGCGESASLGHN 346 (380)
Q Consensus 279 ~vy~wG~n~~gqLG~~~~~~~~~p~~i~~~~--~~~i~~--i~~G~~~t~~l~~~g~v~~wG~n~~gqlG~~ 346 (380)
.+.-.=.+.+-.-..+ ......-.+. +..++. +..++...++++++|++..+-.++--..|..
T Consensus 714 ~iKr~~l~e~~~~~R~-----~kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~eI~~~gR~ 780 (805)
T PRK05560 714 YGKRTPVSEYRLQGRG-----GKGVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVSEISITGRN 780 (805)
T ss_pred eEEEEEHHHhhccCCC-----CCcEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHHHCCccccC
Confidence 7665543332211110 0111111111 123332 2345566888899999988877665555543
No 53
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=59.12 E-value=2.6e+02 Score=30.08 Aligned_cols=265 Identities=11% Similarity=0.040 Sum_probs=123.7
Q ss_pred CCCeEEEEecCCcEEEeeCCCCCC--c-CCCCCCCccceeeccCCCCCcEEEE--EeCCCceEEEecCCcEEEeeCCCCC
Q 016940 51 GPGHSIAVTSKGVVYSFGSNSSGQ--L-GHGTTEEEWRPRPIRSLQGIRIIQA--AAGAGRTMLISDAGQVYAFGKDSFG 125 (380)
Q Consensus 51 G~~~~~~l~~~G~v~~~G~n~~gq--l-G~~~~~~~~~p~~v~~~~~~~I~~V--~~g~~~~~~lt~~G~vy~~G~n~~g 125 (380)
-....++++++|.+=-.-...+.. + |.+. ..+..-++..+..+ +...++.+++|++|++|..-...--
T Consensus 495 ~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~-------s~~klKe~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP 567 (800)
T TIGR01063 495 RENVVVTLSHNGYVKRVPVSAYRLQKRGGKGV-------SGADMKDDDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIP 567 (800)
T ss_pred cceEEEEEcCCCEEEecchhhhhhhcccCcCc-------cccccCCCCeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCc
Confidence 345567888888666443222211 0 0110 00111133355544 3445567899999999999433222
Q ss_pred CCccCCCCceeecCCeeecccCCccEEEEeeC-----CCeEEEEecCCcEEEEEeCCCCccCCCCCCCcccccccccccC
Q 016940 126 EAEYGVQGTKLVTSPQLVESLKNIFVVQAAIG-----NFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLE 200 (380)
Q Consensus 126 qlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g-----~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~ 200 (380)
..+.. .........+....+.+|+.+.+- ....+++|++|.+--.-.+.+-.... ..-.-+.. ..
T Consensus 568 ~~~r~---~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r------~G~~aikl-ke 637 (800)
T TIGR01063 568 EASRT---AKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRS------NGIIAIKL-DD 637 (800)
T ss_pred CCCcC---CCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhcc------CCcccccC-CC
Confidence 21111 111111112233345667766652 23567788998776432222211000 00000000 11
Q ss_pred CCCEEEEEe--cCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEc--cCceEEEEeC
Q 016940 201 NIPVVQIAA--GYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAA--GAWHAAVVGQ 276 (380)
Q Consensus 201 ~~~i~~i~~--g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~--G~~h~~~lt~ 276 (380)
+..++.+.. ...+.+++|+ +| ++|.+-.+.-...+..... .....+ ..+.+|+.+.+ ...+.+++|+
T Consensus 638 ~D~lv~v~~~~~~d~lll~Ts--~G-r~~r~~v~eIp~~gr~~~G-----v~~i~L-~~~E~Vv~~~~v~~~~~ll~vT~ 708 (800)
T TIGR01063 638 GDELISVRLTSGDDEVMLGSK--NG-KAVRFPEEDVRPMGRAARG-----VRGIKL-KNEDFVVSLLVVSEESYLLIVTE 708 (800)
T ss_pred CCEEEEEEEeCCCCEEEEEEC--CC-cEEEEEhhhcCCcCCCCCC-----eecccC-CCCCEEEEEEEeccccEEEEEec
Confidence 233443322 2345777776 88 9988865544333332211 111111 13345555543 2336778888
Q ss_pred CCCEEEEeCCCCCCccCCCCCCccccEEecccC--CCcEEEE--EecCCeEEEEeeCCCEEEEECCCCCCCCCC
Q 016940 277 DGRVCTWGWGRYGCLGHGNEECESVPKVVQALN--DVKAIHV--ATGDYTTFVVSEDGDVYSFGCGESASLGHN 346 (380)
Q Consensus 277 ~g~vy~wG~n~~gqLG~~~~~~~~~p~~i~~~~--~~~i~~i--~~G~~~t~~l~~~g~v~~wG~n~~gqlG~~ 346 (380)
+|.+.-.=..++-.-..+ ......-.+. +..++.+ .......++++++|++..+-.++--..|..
T Consensus 709 ~G~~Kr~~l~e~~~~~R~-----~kGv~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~~lrf~~~eI~~~gR~ 777 (800)
T TIGR01063 709 NGYGKRTSIEEYRETSRG-----GKGVKSIKITDRNGQVVGAIAVDDDDELMLITSAGKLIRTSVQDVSEQGRN 777 (800)
T ss_pred CCcEEEEEHHHccccCCC-----CcceEEEEccCCCCeEEEEEEecCCCeEEEEecCCeEEEeeHhhCCccccC
Confidence 887776644332211110 0111111111 1123222 234556888889999988876665555543
No 54
>PRK05560 DNA gyrase subunit A; Validated
Probab=58.28 E-value=2.7e+02 Score=29.99 Aligned_cols=217 Identities=12% Similarity=0.063 Sum_probs=106.9
Q ss_pred ecCCCeEEEEecCCcEEEeeCCCCCCcCCCCCCCccce--eeccCCCCCcEEEEEeCC-----CceEEEecCCcEEEeeC
Q 016940 49 IAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRP--RPIRSLQGIRIIQAAAGA-----GRTMLISDAGQVYAFGK 121 (380)
Q Consensus 49 ~~G~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p--~~v~~~~~~~I~~V~~g~-----~~~~~lt~~G~vy~~G~ 121 (380)
+...+..+++|+.|++|..-...--..+. ...-.| ..++...+.+|+.+.+-. ...+++|++|.+--.-.
T Consensus 545 ~~t~d~LllfTs~Grv~~l~v~~iP~~~~---~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l 621 (805)
T PRK05560 545 ASTHDTLLFFTNRGRVYRLKVYEIPEASR---TARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSL 621 (805)
T ss_pred ecCCCeEEEEecCCeEEEEEhhhCcCCCc---CCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEh
Confidence 45566788999999999986552221111 111111 123334566888887654 34788899997665543
Q ss_pred CCCCCCccCCCCceeecCCeeecccCCccEEEEee--CCCeEEEEecCCcEEEEEeCCCCccCCCCCCCccccccccccc
Q 016940 122 DSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAI--GNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTL 199 (380)
Q Consensus 122 n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~--g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~ 199 (380)
+++-....+ -..-+..-++..++.+.. ..++.+++|++|++|.+-...-...+...... .+...-
T Consensus 622 ~~~~~~~r~--------G~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv-----~~i~L~ 688 (805)
T PRK05560 622 SEFSNIRSN--------GIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTARGV-----RGIKLR 688 (805)
T ss_pred HHhhhcccC--------CceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccCCc-----ccccCC
Confidence 332110000 001111112344554433 34568999999999977544433333322211 111113
Q ss_pred CCCCEEEEEecC---CceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEE--EccCceEEEE
Q 016940 200 ENIPVVQIAAGY---CYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVV--AAGAWHAAVV 274 (380)
Q Consensus 200 ~~~~i~~i~~g~---~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i--~~G~~h~~~l 274 (380)
.+..|+.+.... .+.++++. .| .+.-.-.+.+-....+ ........+...+..++.+ ..+.+..+++
T Consensus 689 ~~E~Vv~~~~v~~~~~~il~vTk--~G-~iKr~~l~e~~~~~R~-----~kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~ 760 (805)
T PRK05560 689 EGDEVVSMDVVREDSQEILTVTE--NG-YGKRTPVSEYRLQGRG-----GKGVITIKITEKNGKLVGALPVDDDDEIMLI 760 (805)
T ss_pred CCCEEEEEEEEcCCCcEEEEEEe--CC-eEEEEEHHHhhccCCC-----CCcEEeeeccCCCCeEEEEEEecCCCeEEEE
Confidence 345566655443 24666666 77 5554432222111110 0111111111112234333 3345568888
Q ss_pred eCCCCEEEEeCCCCC
Q 016940 275 GQDGRVCTWGWGRYG 289 (380)
Q Consensus 275 t~~g~vy~wG~n~~g 289 (380)
|.+|++..+-.++..
T Consensus 761 T~~G~~lrf~~~eI~ 775 (805)
T PRK05560 761 TDSGKLIRTRVSEIS 775 (805)
T ss_pred ecCCeEEEEEHHHCC
Confidence 999998887765533
No 55
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=56.93 E-value=1.3e+02 Score=25.90 Aligned_cols=27 Identities=11% Similarity=0.135 Sum_probs=16.2
Q ss_pred cEEEEEeCCC-ceEEEec-CCcEEEeeCC
Q 016940 96 RIIQAAAGAG-RTMLISD-AGQVYAFGKD 122 (380)
Q Consensus 96 ~I~~V~~g~~-~~~~lt~-~G~vy~~G~n 122 (380)
.|..+..... ..++... +|.++.|-..
T Consensus 95 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (289)
T cd00200 95 YVSSVAFSPDGRILSSSSRDKTIKVWDVE 123 (289)
T ss_pred cEEEEEEcCCCCEEEEecCCCeEEEEECC
Confidence 5666665554 3334444 7888888654
No 56
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.39 E-value=3.3e+02 Score=30.54 Aligned_cols=174 Identities=14% Similarity=0.080 Sum_probs=88.6
Q ss_pred eEEEecCCcEEEeeCCCCCCCccCCCCceeecCCeeecccCCccEEEEeeCCCeEEEEecCCcEEEEEeCCCCccCCCCC
Q 016940 107 TMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTE 186 (380)
Q Consensus 107 ~~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~ 186 (380)
-+-+|-|++||.|-.++.+++-.-+.-...+..-..+..-.+..+.. -.|.+++...-+|+..|-......+....
T Consensus 92 RaWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~----IqhlLvvaT~~ei~ilgV~~~~~~~~~~~ 167 (1311)
T KOG1900|consen 92 RAWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPE----IQHLLVVATPVEIVILGVSFDEFTGELSI 167 (1311)
T ss_pred ceEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhh----hheeEEecccceEEEEEEEeccccCcccc
Confidence 47789999999999988777644331111111111111111221222 25888888888888777654332222111
Q ss_pred CCcccccccccccCCCCEEEEEecCCceEEEEEeCCCCEE----EEEecCCCCccCCCCCC-----CCCCCeeeeeeecC
Q 016940 187 PNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAV----YSVGCGLGGKLGHGSRT-----DEKHPRLIEQFQLL 257 (380)
Q Consensus 187 ~~~~~p~~v~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~v----y~~G~n~~gqlg~~~~~-----~~~~p~~~~~~~~~ 257 (380)
-. +....+..+..|..|.+..+--++++- +|| .| |-.+++++++-.....- ....|..+..+...
T Consensus 168 f~----~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg-~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~ 241 (1311)
T KOG1900|consen 168 FN----TSFKISVDGVSVNCITYTENGRIFFAG-RDG-NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSS 241 (1311)
T ss_pred cc----cceeeecCCceEEEEEeccCCcEEEee-cCC-CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCC
Confidence 11 112223455567777766655555552 155 43 34444555443222111 12234422222123
Q ss_pred CCccEEEEccCceEE--EEeCCCCEEEEeCCCCCC
Q 016940 258 NLQPVVVAAGAWHAA--VVGQDGRVCTWGWGRYGC 290 (380)
Q Consensus 258 ~~~i~~i~~G~~h~~--~lt~~g~vy~wG~n~~gq 290 (380)
...|.+|+-.....+ ++++.|.+-+|--...|.
T Consensus 242 ~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~ 276 (1311)
T KOG1900|consen 242 KDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGL 276 (1311)
T ss_pred CCcceeeEeccccceeeeeccCceEEEEEccCCCc
Confidence 457888888776544 567778877776555443
No 57
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=56.29 E-value=1.4e+02 Score=27.98 Aligned_cols=59 Identities=17% Similarity=0.326 Sum_probs=38.0
Q ss_pred EEEEeCCCCEEEEeCCCCCCccCCCCCCccccEEecccCCCcEEEEEecCCeEEE--EeeCCCEEEEEC
Q 016940 271 AAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFV--VSEDGDVYSFGC 337 (380)
Q Consensus 271 ~~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~t~~--l~~~g~v~~wG~ 337 (380)
-++....|+||+|-... .+...-++......+..|.+.+...+-+++ +.+++.||.|-.
T Consensus 322 la~gnq~g~v~vwdL~~--------~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 322 LALGNQSGKVYVWDLDN--------NEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred HhhccCCCcEEEEECCC--------CCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 34456789999997533 122244555555566677777766655554 457899999954
No 58
>PHA02713 hypothetical protein; Provisional
Probab=55.85 E-value=81 Score=32.15 Aligned_cols=24 Identities=13% Similarity=0.205 Sum_probs=16.0
Q ss_pred EEecCCCeEEEEecCCcEEEeeCC
Q 016940 47 QAIAGPGHSIAVTSKGVVYSFGSN 70 (380)
Q Consensus 47 ~i~~G~~~~~~l~~~G~v~~~G~n 70 (380)
.....+.+..+..-+|+||++|-.
T Consensus 337 ~m~~~R~~~~~~~~~g~IYviGG~ 360 (557)
T PHA02713 337 PMIKNRCRFSLAVIDDTIYAIGGQ 360 (557)
T ss_pred CCcchhhceeEEEECCEEEEECCc
Confidence 333455555566678999999954
No 59
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=54.16 E-value=36 Score=19.15 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=20.3
Q ss_pred CcEEEEEeCCCceEEEecCCcEEE
Q 016940 95 IRIIQAAAGAGRTMLISDAGQVYA 118 (380)
Q Consensus 95 ~~I~~V~~g~~~~~~lt~~G~vy~ 118 (380)
+.|..|++|....++.|+.+-|-.
T Consensus 2 E~i~aia~g~~~vavaTS~~~lRi 25 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLRI 25 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEEe
Confidence 579999999999999999886544
No 60
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=53.13 E-value=2.3e+02 Score=27.64 Aligned_cols=63 Identities=14% Similarity=0.169 Sum_probs=35.4
Q ss_pred CCeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeec--cCCCCCcEEEEEeCCCceEEEecCCcEEEeeCC
Q 016940 52 PGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPI--RSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKD 122 (380)
Q Consensus 52 ~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v--~~~~~~~I~~V~~g~~~~~~lt~~G~vy~~G~n 122 (380)
....++|.+||.++.+ |-.|.. ....+..+ ....+.++-.+..+..-.++||.++++|..-..
T Consensus 91 ~e~LvvV~~dG~v~vy--~~~G~~------~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~n~ 155 (410)
T PF04841_consen 91 DEELVVVQSDGTVRVY--DLFGEF------QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVVNNI 155 (410)
T ss_pred CCeEEEEEcCCEEEEE--eCCCce------eechhhhccccCcccccccccccCCCCEEEECCCCeEEEEeCc
Confidence 3466778888887775 222322 11111111 111222344445666778999999999998443
No 61
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=52.84 E-value=2.7e+02 Score=30.04 Aligned_cols=62 Identities=10% Similarity=0.149 Sum_probs=32.7
Q ss_pred EEEecCCcEEEeeCCCCCCcC-CCCCCCc-cceeeccCCCCCcEEEEEeCCCceEEEecCCcEEEeeC
Q 016940 56 IAVTSKGVVYSFGSNSSGQLG-HGTTEEE-WRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGK 121 (380)
Q Consensus 56 ~~l~~~G~v~~~G~n~~gqlG-~~~~~~~-~~p~~v~~~~~~~I~~V~~g~~~~~~lt~~G~vy~~G~ 121 (380)
+-+|.|.+++.|-.|+....- ..+.... ..-..+.+-.+.- ...-.|.+++.+.-++|..|-
T Consensus 96 cWiT~dnkLiLWnynn~neyq~idd~shtIlkVkLvrPkantF----vs~i~hlL~vAT~~e~~ilgv 159 (1263)
T COG5308 96 CWITNDNKLILWNYNNSNEYQEIDDFSHTILKVKLVRPKANTF----VSRISHLLFVATEKEVMILGV 159 (1263)
T ss_pred eEEEcCCEEEEEecCCCcchhhhhhhhhheeEEEEeccCCccc----HHhhhhhhhhhhhheeeEEEE
Confidence 568899999999987432110 0000000 0011111111111 122358888888889999884
No 62
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=52.78 E-value=1.7e+02 Score=27.70 Aligned_cols=18 Identities=11% Similarity=0.093 Sum_probs=13.6
Q ss_pred CCceEEEecCCcEEEeeC
Q 016940 104 AGRTMLISDAGQVYAFGK 121 (380)
Q Consensus 104 ~~~~~~lt~~G~vy~~G~ 121 (380)
..+.++.+.+|.||.+-.
T Consensus 320 g~~l~~~~~~G~l~~~d~ 337 (377)
T TIGR03300 320 GGYLVVGDFEGYLHWLSR 337 (377)
T ss_pred CCEEEEEeCCCEEEEEEC
Confidence 346777788999998854
No 63
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=52.21 E-value=1.7e+02 Score=27.11 Aligned_cols=18 Identities=6% Similarity=0.025 Sum_probs=12.3
Q ss_pred eEEEEeeCCCEEEEECCC
Q 016940 322 TTFVVSEDGDVYSFGCGE 339 (380)
Q Consensus 322 ~t~~l~~~g~v~~wG~n~ 339 (380)
+..+...+++||+.|-..
T Consensus 216 ~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 216 AASIKINESLLLCIGGFN 233 (323)
T ss_pred eeEEEECCCEEEEECCcC
Confidence 334455678999998654
No 64
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=50.83 E-value=95 Score=27.52 Aligned_cols=71 Identities=18% Similarity=0.188 Sum_probs=43.7
Q ss_pred CCCeEEEEecCCcEEEEEeCCCCccCCCCCCCcccccccccccCCCCEEEEEecCCceEEEEEeCCCCEEEEEecCCCCc
Q 016940 157 GNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGK 236 (380)
Q Consensus 157 g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gq 236 (380)
+..-.++.+.+|.||+|=||.+|++...... ....-..-|..+....+..+...+| +++.|-.-.+..
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s-----------~~e~i~~~Ip~~~~~~~~c~~~~dg-~ir~~n~~p~k~ 136 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCS-----------GEESIDLGIPNGRDSSLGCVGAQDG-RIRACNIKPNKV 136 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhc-----------ccccceeccccccccceeEEeccCC-ceeeeccccCce
Confidence 4456778899999999999977766543211 1111133445556655556555588 999986544444
Q ss_pred cCC
Q 016940 237 LGH 239 (380)
Q Consensus 237 lg~ 239 (380)
+|.
T Consensus 137 ~g~ 139 (238)
T KOG2444|consen 137 LGY 139 (238)
T ss_pred eee
Confidence 443
No 65
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=50.43 E-value=20 Score=21.85 Aligned_cols=18 Identities=17% Similarity=0.423 Sum_probs=15.5
Q ss_pred eEEEEeCCCCEEEEeCCC
Q 016940 270 HAAVVGQDGRVCTWGWGR 287 (380)
Q Consensus 270 h~~~lt~~g~vy~wG~n~ 287 (380)
+.++++.+|.+|+-|.-.
T Consensus 16 ~~IavD~~GNiYv~G~T~ 33 (38)
T PF06739_consen 16 NGIAVDSNGNIYVTGYTN 33 (38)
T ss_pred EEEEECCCCCEEEEEeec
Confidence 678999999999999744
No 66
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=48.95 E-value=48 Score=29.32 Aligned_cols=98 Identities=17% Similarity=0.188 Sum_probs=62.3
Q ss_pred EEEccCceEEEEeCCCCEEEEeCCCCCCccCCCCCCccccEEecccCCCcEEEEEecCC--eEEEEeeCCCEEEEECCCC
Q 016940 263 VVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDY--TTFVVSEDGDVYSFGCGES 340 (380)
Q Consensus 263 ~i~~G~~h~~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~~--~t~~l~~~g~v~~wG~n~~ 340 (380)
.|.-+....++.+.+|.||+|=.|.+|++-.- .+... +.-..-|..|.. --++-..+|.++.|---.+
T Consensus 65 ~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~------~~s~~----e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~ 134 (238)
T KOG2444|consen 65 RVVTASAKLMVGTSDGAVYVFNWNLEGAHSDR------VCSGE----ESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN 134 (238)
T ss_pred eecccCceEEeecccceEEEecCCccchHHHh------hhccc----ccceeccccccccceeEEeccCCceeeeccccC
Confidence 44445566777899999999999988775321 11111 111223445555 3334447899999987777
Q ss_pred CCCCCCCCCC-CCccchhhhhhhhheeeeee
Q 016940 341 ASLGHNAIAD-GQVCSLLFLSIFQYLQIWLN 370 (380)
Q Consensus 341 gqlG~~~~~~-~~~~~~~~~~~~~~~~~~~~ 370 (380)
-.+|.-...+ ......++..+-+++.||..
T Consensus 135 k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~ 165 (238)
T KOG2444|consen 135 KVLGYVGQHNFESGEELIVVGSDEFLKIADT 165 (238)
T ss_pred ceeeeeccccCCCcceeEEecCCceEEeecc
Confidence 7777666555 44566677777888888854
No 67
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.73 E-value=4.4e+02 Score=29.67 Aligned_cols=217 Identities=12% Similarity=0.072 Sum_probs=101.8
Q ss_pred EEEecCCcEEEeeCCCCCCcCCCCCCCc--cceeeccCCCCCcEEEEEeCCCceEEEecCCcEEEeeCCCC-CCCccCCC
Q 016940 56 IAVTSKGVVYSFGSNSSGQLGHGTTEEE--WRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSF-GEAEYGVQ 132 (380)
Q Consensus 56 ~~l~~~G~v~~~G~n~~gqlG~~~~~~~--~~p~~v~~~~~~~I~~V~~g~~~~~~lt~~G~vy~~G~n~~-gqlG~~~~ 132 (380)
+-+|.|.++|.|-.++.+++-.-+.... ..-..++.-.+.-+-. =.|.++|.+.-+++..|--.. ...+.+..
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~----IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f 168 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPE----IQHLLVVATPVEIVILGVSFDEFTGELSIF 168 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhh----hheeEEecccceEEEEEEEeccccCccccc
Confidence 4678899999999998766543221111 1111122222222222 248899998889999884221 11111110
Q ss_pred CceeecCCeeecccCCccEEEEeeCCCeEEEEe-cCCcEEEEEeC----CCCc-c---CCCCC-CCcccccccccc-cCC
Q 016940 133 GTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLS-REGRVYTFSWG----NDAR-L---GHHTE-PNDVEPHPLLGT-LEN 201 (380)
Q Consensus 133 ~~~~~~~p~~v~~~~~~~i~~i~~g~~~~~~lt-~~G~vy~~G~n----~~gq-l---g~~~~-~~~~~p~~v~~~-~~~ 201 (380)
++. -.| ...+..|..|++..+=-++++ ++|.||-.-.. -+++ + ..... .....|..+..+ ...
T Consensus 169 ~~~-----~~i-~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~ 242 (1311)
T KOG1900|consen 169 NTS-----FKI-SVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSK 242 (1311)
T ss_pred ccc-----eee-ecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCC
Confidence 111 111 112333444443333323332 34444322111 1111 0 00000 112244433333 446
Q ss_pred CCEEEEEecCCceEEEEEeCCCCEEEEEecCCCCccCCCCC---------CCCCCCeeeeeeecCCCccEEEEccC----
Q 016940 202 IPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSR---------TDEKHPRLIEQFQLLNLQPVVVAAGA---- 268 (380)
Q Consensus 202 ~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~---------~~~~~p~~~~~~~~~~~~i~~i~~G~---- 268 (380)
.+|.+|+......+..+..+.| .|-+|=-...|.-+.-.. ....... +.....-.+|++|+.-.
T Consensus 243 dpI~qi~ID~SR~IlY~lsek~-~v~~Y~i~~~G~~~~r~~~~~~~~i~~qa~~~~~--~~~~s~f~~IvsI~~l~~~es 319 (1311)
T KOG1900|consen 243 DPIRQITIDNSRNILYVLSEKG-TVSAYDIGGNGLGGPRFVSVSRNYIDVQALSLKN--PLDDSVFFSIVSISPLSASES 319 (1311)
T ss_pred CcceeeEeccccceeeeeccCc-eEEEEEccCCCccceeeeehhHHHHHHHhhhccc--cCCCcccceeEEecccCcccc
Confidence 7899999999988888875677 766664433333322100 0000000 01111222456665433
Q ss_pred --ceEEEEeCCCC-EEEEeC
Q 016940 269 --WHAAVVGQDGR-VCTWGW 285 (380)
Q Consensus 269 --~h~~~lt~~g~-vy~wG~ 285 (380)
-|.+|+|..|- +|.-|.
T Consensus 320 ~~l~LvA~ts~GvRlYfs~s 339 (1311)
T KOG1900|consen 320 NDLHLVAITSTGVRLYFSTS 339 (1311)
T ss_pred cceeEEEEecCCeEEEEecc
Confidence 38999999886 776665
No 68
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=47.06 E-value=46 Score=31.03 Aligned_cols=58 Identities=19% Similarity=0.298 Sum_probs=40.6
Q ss_pred EEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeCCCce--EEEecCCcEEEeeC
Q 016940 56 IAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRT--MLISDAGQVYAFGK 121 (380)
Q Consensus 56 ~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g~~~~--~~lt~~G~vy~~G~ 121 (380)
++....|+||+|--.. .++...++......+..|++.+.+..-+ ++++++|.||.|-.
T Consensus 323 a~gnq~g~v~vwdL~~--------~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDN--------NEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred hhccCCCcEEEEECCC--------CCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 3445779999997432 2233556666667778999998887765 55588999999853
No 69
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=45.89 E-value=3.5e+02 Score=27.67 Aligned_cols=115 Identities=17% Similarity=0.059 Sum_probs=56.3
Q ss_pred EEeeCCCeEEEEecCCcEEEE-EeCCCCccCCCCCCCcccccccccccCCCCEEEEEecCCceEEEEEeCCCCEEEEEec
Q 016940 153 QAAIGNFFTAVLSREGRVYTF-SWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGC 231 (380)
Q Consensus 153 ~i~~g~~~~~~lt~~G~vy~~-G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~ 231 (380)
....-.+|.++-|++|.||.+ -++...+.. ..+.+.... ..-..+|..|....+|--..+.--|. .|-.|-.
T Consensus 355 F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~-----~~~~~~~~~-~~h~g~v~~v~~nPF~~k~fls~gDW-~vriWs~ 427 (555)
T KOG1587|consen 355 FEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE-----VSYKGHSTF-ITHIGPVYAVSRNPFYPKNFLSVGDW-TVRIWSE 427 (555)
T ss_pred eccCCCceEEEEcCCcEEEEEeccCCccccc-----ccccccccc-cccCcceEeeecCCCccceeeeeccc-eeEeccc
Confidence 334456788999999999963 222221111 111122111 13445677888877766555541233 4555521
Q ss_pred CCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEccCce---EEEEeCCCCEEEEeCCC
Q 016940 232 GLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWH---AAVVGQDGRVCTWGWGR 287 (380)
Q Consensus 232 n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~h---~~~lt~~g~vy~wG~n~ 287 (380)
. ....|.. .+......+..++=.-.| +++.+.+|.++.|-...
T Consensus 428 ~-----------~~~~Pl~--~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~ 473 (555)
T KOG1587|consen 428 D-----------VIASPLL--SLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQ 473 (555)
T ss_pred c-----------CCCCcch--hhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhc
Confidence 1 0111111 111111124344433333 44556799999998755
No 70
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=44.92 E-value=2.3e+02 Score=27.13 Aligned_cols=16 Identities=25% Similarity=0.441 Sum_probs=12.3
Q ss_pred CCeEEEEecCCcEEEE
Q 016940 158 NFFTAVLSREGRVYTF 173 (380)
Q Consensus 158 ~~~~~~lt~~G~vy~~ 173 (380)
.++.++.+++|+||++
T Consensus 376 ~~~l~v~t~~G~l~~~ 391 (394)
T PRK11138 376 DDKLLIQARDGTVYAI 391 (394)
T ss_pred CCEEEEEeCCceEEEE
Confidence 4577778889999865
No 71
>PHA03098 kelch-like protein; Provisional
Probab=42.68 E-value=3.7e+02 Score=27.02 Aligned_cols=17 Identities=12% Similarity=0.438 Sum_probs=11.2
Q ss_pred eEEEEeeCCCEEEEECCC
Q 016940 322 TTFVVSEDGDVYSFGCGE 339 (380)
Q Consensus 322 ~t~~l~~~g~v~~wG~n~ 339 (380)
|+++. -+++||++|-..
T Consensus 481 ~~~~~-~~~~iyv~GG~~ 497 (534)
T PHA03098 481 ASLCI-FNNKIYVVGGDK 497 (534)
T ss_pred ceEEE-ECCEEEEEcCCc
Confidence 44443 488999998543
No 72
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=42.20 E-value=1.4e+02 Score=28.60 Aligned_cols=118 Identities=15% Similarity=0.180 Sum_probs=55.8
Q ss_pred eeceEEecCCC-eE-EEEecCCc-EEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeCCC-ceEEEecCCcEEE
Q 016940 43 RENSQAIAGPG-HS-IAVTSKGV-VYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAG-RTMLISDAGQVYA 118 (380)
Q Consensus 43 ~~i~~i~~G~~-~~-~~l~~~G~-v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g~~-~~~~lt~~G~vy~ 118 (380)
+.+..|..|.. |. .+.+.||+ +|+.+ .+|. -..+.......++.|..|.. +.++++.||+...
T Consensus 27 ~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~--rdg~-----------vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~ 93 (369)
T PF02239_consen 27 KVVARIPTGGAPHAGLKFSPDGRYLYVAN--RDGT-----------VSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVY 93 (369)
T ss_dssp SEEEEEE-STTEEEEEE-TT-SSEEEEEE--TTSE-----------EEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEE
T ss_pred eEEEEEcCCCCceeEEEecCCCCEEEEEc--CCCe-----------EEEEECCcccEEEEEecCCCcceEEEcCCCCEEE
Confidence 34667777765 44 45678886 77764 2332 23344444557788887766 5788899998555
Q ss_pred eeCCCCCCCccCCCCc----eeecCCeeecccCCccEEEEeeCCC---eEEEEecCCcEEEE
Q 016940 119 FGKDSFGEAEYGVQGT----KLVTSPQLVESLKNIFVVQAAIGNF---FTAVLSREGRVYTF 173 (380)
Q Consensus 119 ~G~n~~gqlG~~~~~~----~~~~~p~~v~~~~~~~i~~i~~g~~---~~~~lt~~G~vy~~ 173 (380)
-+....+++..-+..+ ..++...........++..|..... +.+.+.+.+++|.-
T Consensus 94 v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vV 155 (369)
T PF02239_consen 94 VANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVV 155 (369)
T ss_dssp EEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEE
T ss_pred EEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEE
Confidence 5543344433221111 0111111111112335555554322 55667777888854
No 73
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=41.67 E-value=3.7e+02 Score=26.86 Aligned_cols=60 Identities=10% Similarity=-0.057 Sum_probs=33.0
Q ss_pred EEEeeCCCeEEEEecCCcEEEEEeCCCCccCCCCCCCcccccccccccCCCCEEEEEecCCceEEEEEeCCCCEEEEEec
Q 016940 152 VQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGC 231 (380)
Q Consensus 152 ~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~ 231 (380)
.=|.||..|..+.+-.|..+.--.+. ....+..-+..+.-+.+-= ++|-|++| .++.|+.
T Consensus 215 liit~Gk~H~~Fw~~~~~~l~k~~~~------------------fek~ekk~Vl~v~F~engd-viTgDS~G-~i~Iw~~ 274 (626)
T KOG2106|consen 215 LIITCGKGHLYFWTLRGGSLVKRQGI------------------FEKREKKFVLCVTFLENGD-VITGDSGG-NILIWSK 274 (626)
T ss_pred EEEEeCCceEEEEEccCCceEEEeec------------------cccccceEEEEEEEcCCCC-EEeecCCc-eEEEEeC
Confidence 34778888888887776555221111 1001112244554444433 34555688 9999985
No 74
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.34 E-value=1.3e+02 Score=32.82 Aligned_cols=37 Identities=11% Similarity=0.175 Sum_probs=26.4
Q ss_pred cEEEE-EecCCeEEEEe--eCCCEEEEECCCCCCCCCCCC
Q 016940 312 KAIHV-ATGDYTTFVVS--EDGDVYSFGCGESASLGHNAI 348 (380)
Q Consensus 312 ~i~~i-~~G~~~t~~l~--~~g~v~~wG~n~~gqlG~~~~ 348 (380)
-|..+ .|..+-.++|+ +|+++++|+-|....||.=..
T Consensus 255 GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~ 294 (1049)
T KOG0307|consen 255 GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA 294 (1049)
T ss_pred ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC
Confidence 35555 47777666666 689999999998766665444
No 75
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=41.18 E-value=2.8e+02 Score=25.33 Aligned_cols=61 Identities=20% Similarity=0.190 Sum_probs=32.0
Q ss_pred ceEEEEeCCCCEEEEeCCC--CCCccCCC-----CCCccccEEecccCCCcEEEEEecCCeEEEEeeCCCEEEEECC
Q 016940 269 WHAAVVGQDGRVCTWGWGR--YGCLGHGN-----EECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCG 338 (380)
Q Consensus 269 ~h~~~lt~~g~vy~wG~n~--~gqLG~~~-----~~~~~~p~~i~~~~~~~i~~i~~G~~~t~~l~~~g~v~~wG~n 338 (380)
.|+++.- ++++|.||--+ +|.+..-. +..-..|+.--.+. .+-+.|++++- .++.|++|--
T Consensus 81 GHtvV~y-~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vP-------gaRDGHsAcV~-gn~MyiFGGy 148 (392)
T KOG4693|consen 81 GHTVVEY-QDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVP-------GARDGHSACVW-GNQMYIFGGY 148 (392)
T ss_pred CceEEEE-cceEEEEcCccCcccccceeeeeccccccccccceeeecC-------CccCCceeeEE-CcEEEEecCh
Confidence 4777766 56999998533 44433321 11122222211111 13457777764 4568999843
No 76
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=40.70 E-value=3.5e+02 Score=26.30 Aligned_cols=72 Identities=8% Similarity=-0.004 Sum_probs=37.9
Q ss_pred CccEEEEeeCCCeEEEE--ecCCcEEEEEeCCCCccCCCCCCCcccccccccc-cCCCCEEEEEecCCceEEEEEeCCCC
Q 016940 148 NIFVVQAAIGNFFTAVL--SREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGT-LENIPVVQIAAGYCYLLALACQPSGM 224 (380)
Q Consensus 148 ~~~i~~i~~g~~~~~~l--t~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~-~~~~~i~~i~~g~~~~~~l~~~~~G~ 224 (380)
..+|..++.+.+.-++| ..+.++..|-.-. ...+.+.... ....-|.+.-.|.+-.++..-.+|+
T Consensus 395 ~~~its~~iS~d~k~~LvnL~~qei~LWDl~e-----------~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~- 462 (519)
T KOG0293|consen 395 EQPITSFSISKDGKLALVNLQDQEIHLWDLEE-----------NKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDS- 462 (519)
T ss_pred cCceeEEEEcCCCcEEEEEcccCeeEEeecch-----------hhHHHHhhcccccceEEEeccCCCCcceEEecCCCc-
Confidence 34566666555544444 3456777662111 1111222211 1223366666667766666655688
Q ss_pred EEEEEec
Q 016940 225 AVYSVGC 231 (380)
Q Consensus 225 ~vy~~G~ 231 (380)
+||.|-.
T Consensus 463 kvyIWhr 469 (519)
T KOG0293|consen 463 KVYIWHR 469 (519)
T ss_pred eEEEEEc
Confidence 9999963
No 77
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=40.27 E-value=3.1e+02 Score=25.43 Aligned_cols=18 Identities=17% Similarity=0.313 Sum_probs=12.0
Q ss_pred CceEEEecCCcEEEeeCCC
Q 016940 105 GRTMLISDAGQVYAFGKDS 123 (380)
Q Consensus 105 ~~~~~lt~~G~vy~~G~n~ 123 (380)
.|++++ -+++||.+|-..
T Consensus 116 ~~~~~~-~~~~iYv~GG~~ 133 (323)
T TIGR03548 116 NGSACY-KDGTLYVGGGNR 133 (323)
T ss_pred CceEEE-ECCEEEEEeCcC
Confidence 344444 468999999753
No 78
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=39.24 E-value=3.5e+02 Score=25.80 Aligned_cols=17 Identities=18% Similarity=0.049 Sum_probs=11.6
Q ss_pred eEEEEeCCCCEEEEeCC
Q 016940 270 HAAVVGQDGRVCTWGWG 286 (380)
Q Consensus 270 h~~~lt~~g~vy~wG~n 286 (380)
+..++..+++||+.|-.
T Consensus 214 ~~a~v~~~~~iYv~GG~ 230 (376)
T PRK14131 214 GSAVVIKGNKLWLINGE 230 (376)
T ss_pred cceEEEECCEEEEEeee
Confidence 33444557899999963
No 79
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=37.14 E-value=64 Score=17.89 Aligned_cols=18 Identities=39% Similarity=0.623 Sum_probs=13.9
Q ss_pred eEEEEecCCcEEEeeCCC
Q 016940 54 HSIAVTSKGVVYSFGSNS 71 (380)
Q Consensus 54 ~~~~l~~~G~v~~~G~n~ 71 (380)
+.++++++|++|+.-.+.
T Consensus 5 ~gvav~~~g~i~VaD~~n 22 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGN 22 (28)
T ss_dssp EEEEEETTSEEEEEECCC
T ss_pred cEEEEeCCCCEEEEECCC
Confidence 567888999999876553
No 80
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=36.34 E-value=5.5e+02 Score=27.28 Aligned_cols=122 Identities=16% Similarity=0.209 Sum_probs=66.8
Q ss_pred ecCCCeEEEEecCCcEEEeeCCCCCCcCCCCCCCcccee--eccCCCCCcEEEEEeCCC--ceEEEecCCcEEEeeCCCC
Q 016940 49 IAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPR--PIRSLQGIRIIQAAAGAG--RTMLISDAGQVYAFGKDSF 124 (380)
Q Consensus 49 ~~G~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~--~v~~~~~~~I~~V~~g~~--~~~~lt~~G~vy~~G~n~~ 124 (380)
+...+..+++|++|++|.+-.+.-- .|.+ .-.|. .+....+.+|+.+.+... +.+++|+.|...-.-.+++
T Consensus 533 ~~t~d~LllfTs~Gr~yrf~v~eIP-~GR~----aGgpV~~~L~L~~gE~Iv~~~~v~~~~~lLlaT~~GyGKrt~lse~ 607 (735)
T TIGR01062 533 GKSNQKVVFIDSTGRSYALDPDNLP-SARG----QGEPLTGKLLLPIGATITNILMYSPNQLLLMASDAGYGFLCNFNDL 607 (735)
T ss_pred ecCCCEEEEEECCCeEEEEEhHhcC-cCcc----CCceeEeeecCCCCCEEEEEEEecCCcEEEEEEcCCcEEEEEhHhc
Confidence 4455678899999999999765432 2221 11222 233346678888876544 4788899997666654433
Q ss_pred CCCccCCCCceeecCCeeecccCCccEEE--EeeCC-CeEEEEecCCcEEEEEeCCCCccCC
Q 016940 125 GEAEYGVQGTKLVTSPQLVESLKNIFVVQ--AAIGN-FFTAVLSREGRVYTFSWGNDARLGH 183 (380)
Q Consensus 125 gqlG~~~~~~~~~~~p~~v~~~~~~~i~~--i~~g~-~~~~~lt~~G~vy~~G~n~~gqlg~ 183 (380)
-....+. ..... +. .+..++. ...+. ++.+++|++|++..+-.+.-..++.
T Consensus 608 ~~~~RaG--Kgvi~----Lk--~~d~lv~v~~v~~~dd~V~liT~~GrlLrf~v~EIp~~gR 661 (735)
T TIGR01062 608 IARNKAG--KALIN----LP--ENASVIAPLPVNGDSDMIAAITEAGRMLVFPIDDLPELSK 661 (735)
T ss_pred cccCcCC--eEEEE----eC--CCCEEEEEEEEcCCCCEEEEEeCCCcEEEEEHHHCCccCC
Confidence 2211110 00011 11 1222332 12233 3577899999999776555444443
No 81
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=34.56 E-value=7.2e+02 Score=28.05 Aligned_cols=122 Identities=12% Similarity=0.085 Sum_probs=0.0
Q ss_pred CEEEEEecCCc-eEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEE-EccCceEEEE-eCCCC
Q 016940 203 PVVQIAAGYCY-LLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVV-AAGAWHAAVV-GQDGR 279 (380)
Q Consensus 203 ~i~~i~~g~~~-~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i-~~G~~h~~~l-t~~g~ 279 (380)
.+.+++....| +++++-.+|| .|-+|-... ........+........+.++.++ .|+..+.+|+ ++||.
T Consensus 1050 ~v~k~a~s~~~~s~FvsgS~DG-tVKvW~~~k-------~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1050 AVIKLAVSSEHTSLFVSGSDDG-TVKVWNLRK-------LEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGS 1121 (1431)
T ss_pred cccceeecCCCCceEEEecCCc-eEEEeeehh-------hhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCe
Q ss_pred EEEEeCCCCCCccCCCCCCccccEEecccCCCcEEEE-----EecCCeEEEEeeCCCEEEEE
Q 016940 280 VCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHV-----ATGDYTTFVVSEDGDVYSFG 336 (380)
Q Consensus 280 vy~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i-----~~G~~~t~~l~~~g~v~~wG 336 (380)
|-..+-+.+ .........-.....-.+..++++ ..+..-.+..|..+.+..|+
T Consensus 1122 v~~~~id~~----~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D 1179 (1431)
T KOG1240|consen 1122 VRVLRIDHY----NVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWD 1179 (1431)
T ss_pred EEEEEcccc----ccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEec
No 82
>PHA02790 Kelch-like protein; Provisional
Probab=33.01 E-value=3e+02 Score=27.41 Aligned_cols=17 Identities=18% Similarity=0.284 Sum_probs=11.8
Q ss_pred eEEEEecCCcEEEeeCC
Q 016940 54 HSIAVTSKGVVYSFGSN 70 (380)
Q Consensus 54 ~~~~l~~~G~v~~~G~n 70 (380)
+..+..-+|+||+.|-.
T Consensus 311 ~~~~v~~~~~iYviGG~ 327 (480)
T PHA02790 311 YASGVPANNKLYVVGGL 327 (480)
T ss_pred cceEEEECCEEEEECCc
Confidence 33445568999999953
No 83
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=32.78 E-value=38 Score=21.37 Aligned_cols=18 Identities=28% Similarity=0.259 Sum_probs=11.7
Q ss_pred CceEEEEeCCCCEEEEeC
Q 016940 268 AWHAAVVGQDGRVCTWGW 285 (380)
Q Consensus 268 ~~h~~~lt~~g~vy~wG~ 285 (380)
..|+++...++++|.+|-
T Consensus 3 ~~h~~~~~~~~~i~v~GG 20 (49)
T PF13418_consen 3 YGHSAVSIGDNSIYVFGG 20 (49)
T ss_dssp BS-EEEEE-TTEEEEE--
T ss_pred ceEEEEEEeCCeEEEECC
Confidence 368888887889999995
No 84
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=31.79 E-value=97 Score=22.53 Aligned_cols=41 Identities=17% Similarity=0.170 Sum_probs=25.6
Q ss_pred cCCeeecccCCccEEEEeeC-CCeEEEEecCCcEEEEEeCCCCc
Q 016940 138 TSPQLVESLKNIFVVQAAIG-NFFTAVLSREGRVYTFSWGNDAR 180 (380)
Q Consensus 138 ~~p~~v~~~~~~~i~~i~~g-~~~~~~lt~~G~vy~~G~n~~gq 180 (380)
..|-.+.. +..=..|+|. ....++|++||.+|+-+.-..|.
T Consensus 7 t~Pa~i~~--~~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~ 48 (81)
T PF03785_consen 7 THPASINL--GQTSISVSCDVPGSYVALSQDGDLYGKAIVNSGN 48 (81)
T ss_dssp E--SEEET--T-SEEEEEESSTT-EEEEEETTEEEEEEE-BTTE
T ss_pred cccccccc--cccEEEEEecCCCcEEEEecCCEEEEEEEecCce
Confidence 34555532 2234679999 88999999999999666554443
No 85
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=31.64 E-value=4.7e+02 Score=25.04 Aligned_cols=67 Identities=19% Similarity=0.239 Sum_probs=41.4
Q ss_pred EEEEEecCCeEEEE--eeCCCEEEEECCCCCCCCCCCCCCCCccchhh--hhhhhheeeeeeccccCCCCC
Q 016940 313 AIHVATGDYTTFVV--SEDGDVYSFGCGESASLGHNAIADGQVCSLLF--LSIFQYLQIWLNLSSYRHLPT 379 (380)
Q Consensus 313 i~~i~~G~~~t~~l--~~~g~v~~wG~n~~gqlG~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 379 (380)
|..|.-..+.-+++ .+|+.|-.|-.|...+||.=..-+.....+.. =+-++-+..-+....+||||+
T Consensus 318 V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv~t~rEk~~~~Y~e~Lke~y~~~peIkRIarHR~lPk 388 (433)
T KOG0268|consen 318 VFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGVITPREKNKLEYNEALKERYKHLPEIKRIARHRHLPK 388 (433)
T ss_pred eeEEEEeccccEEEecCCCcceeeeecchhhhcCCCChhHHHHHHHHHHHHHHHhhcHHHHHHHhhccCCH
Confidence 33333333333444 47899999999999999986655554322211 112444555567788999985
No 86
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=31.13 E-value=6.8e+02 Score=26.76 Aligned_cols=68 Identities=7% Similarity=0.128 Sum_probs=41.2
Q ss_pred eeeceEEecCCCeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeCCCceEEEecCCcEEEeeC
Q 016940 42 RRENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGK 121 (380)
Q Consensus 42 ~~~i~~i~~G~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g~~~~~~lt~~G~vy~~G~ 121 (380)
+.+|.-+++-+.+.++... .++|+|-.+..- .-.-.+...+|.....=++|.++++.++.++.|-.
T Consensus 76 p~~I~alas~~~~vy~A~g-~~i~~~~rgk~i-------------~~~~~~~~a~v~~l~~fGe~lia~d~~~~l~vw~~ 141 (910)
T KOG1539|consen 76 PDKITALASDKDYVYVASG-NKIYAYARGKHI-------------RHTTLLHGAKVHLLLPFGEHLIAVDISNILFVWKT 141 (910)
T ss_pred CCceEEEEecCceEEEecC-cEEEEEEccceE-------------EEEeccccceEEEEeeecceEEEEEccCcEEEEEe
Confidence 3466666666665555433 457777544210 00011112367777777889999999999999975
Q ss_pred CC
Q 016940 122 DS 123 (380)
Q Consensus 122 n~ 123 (380)
..
T Consensus 142 s~ 143 (910)
T KOG1539|consen 142 SS 143 (910)
T ss_pred cc
Confidence 43
No 87
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=31.11 E-value=4.8e+02 Score=24.97 Aligned_cols=72 Identities=13% Similarity=0.228 Sum_probs=38.0
Q ss_pred cEEEEEeCCC-ce-EEEecCCc-EEEeeCCCCCCCccCCCCceeecCCeeecccCCccEEEEeeCCC-eEEEEecCCcEE
Q 016940 96 RIIQAAAGAG-RT-MLISDAGQ-VYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNF-FTAVLSREGRVY 171 (380)
Q Consensus 96 ~I~~V~~g~~-~~-~~lt~~G~-vy~~G~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~-~~~~lt~~G~vy 171 (380)
.+..|..|.. |. ++.+.||+ +|..+. .|.+ ..+.......+..|..|.+ +.++++.+|+..
T Consensus 28 ~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r--dg~v-------------sviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~ 92 (369)
T PF02239_consen 28 VVARIPTGGAPHAGLKFSPDGRYLYVANR--DGTV-------------SVIDLATGKVVATIKVGGNPRGIAVSPDGKYV 92 (369)
T ss_dssp EEEEEE-STTEEEEEE-TT-SSEEEEEET--TSEE-------------EEEETTSSSEEEEEE-SSEEEEEEE--TTTEE
T ss_pred EEEEEcCCCCceeEEEecCCCCEEEEEcC--CCeE-------------EEEECCcccEEEEEecCCCcceEEEcCCCCEE
Confidence 5677777654 55 55678886 888753 2332 1222333445778887776 678899999855
Q ss_pred EEEeCCCCccC
Q 016940 172 TFSWGNDARLG 182 (380)
Q Consensus 172 ~~G~n~~gqlg 182 (380)
.-+.-..+++.
T Consensus 93 ~v~n~~~~~v~ 103 (369)
T PF02239_consen 93 YVANYEPGTVS 103 (369)
T ss_dssp EEEEEETTEEE
T ss_pred EEEecCCCcee
Confidence 43433334444
No 88
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=30.47 E-value=7.6e+02 Score=27.11 Aligned_cols=28 Identities=14% Similarity=0.154 Sum_probs=23.1
Q ss_pred eeeceEEecCCCe--EEEEecCCcEEEeeC
Q 016940 42 RRENSQAIAGPGH--SIAVTSKGVVYSFGS 69 (380)
Q Consensus 42 ~~~i~~i~~G~~~--~~~l~~~G~v~~~G~ 69 (380)
...|.+|+...++ .++++.||++..|-.
T Consensus 426 ~~~v~~vaf~~~~~~~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 426 PSPVNDVAFSPSNSRFAVLTSDGSLSIYEW 455 (928)
T ss_pred CCCcEEEEEeCCCCeEEEEECCCCEEEEEe
Confidence 3488899999988 899999998777753
No 89
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=29.06 E-value=7.3e+02 Score=26.42 Aligned_cols=110 Identities=13% Similarity=0.108 Sum_probs=62.3
Q ss_pred cCCCeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeCC--CceEEEecCCcEEEeeCCCCCCC
Q 016940 50 AGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGA--GRTMLISDAGQVYAFGKDSFGEA 127 (380)
Q Consensus 50 ~G~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g~--~~~~~lt~~G~vy~~G~n~~gql 127 (380)
.-...++++|++|-|-..--..+. +..+..-.+..++.+..+. ...+++|++|++|.+..+.-- .
T Consensus 492 ~~e~v~VilTk~G~IKr~~~~~~~------------~saikLKegD~L~~~~~~~t~d~LllfTs~Gr~yrf~v~eIP-~ 558 (735)
T TIGR01062 492 PKEPVTIILSKMGWVRSAKGHDID------------LSTLKYKAGDSEKAIIEGKSNQKVVFIDSTGRSYALDPDNLP-S 558 (735)
T ss_pred cCcceEEEEecCCEEEeccccccc------------hhccCcCCCCeEEEEEEecCCCEEEEEECCCeEEEEEhHhcC-c
Confidence 355677888999866543322111 1222223455666664444 458999999999999765431 1
Q ss_pred ccCCCCceeecCCeeecccCCccEEEEeeCCC--eEEEEecCCcEEEEEeC
Q 016940 128 EYGVQGTKLVTSPQLVESLKNIFVVQAAIGNF--FTAVLSREGRVYTFSWG 176 (380)
Q Consensus 128 G~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~--~~~~lt~~G~vy~~G~n 176 (380)
|.+. ..+.-..+....+.+|+.+.+... +.+++|+.|..+..-.+
T Consensus 559 GR~a----GgpV~~~L~L~~gE~Iv~~~~v~~~~~lLlaT~~GyGKrt~ls 605 (735)
T TIGR01062 559 ARGQ----GEPLTGKLLLPIGATITNILMYSPNQLLLMASDAGYGFLCNFN 605 (735)
T ss_pred CccC----CceeEeeecCCCCCEEEEEEEecCCcEEEEEEcCCcEEEEEhH
Confidence 2211 111111223335667887776543 47788899877755433
No 90
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=28.96 E-value=7.6e+02 Score=26.65 Aligned_cols=70 Identities=20% Similarity=0.211 Sum_probs=37.4
Q ss_pred CCCeEEEEecCCc-EEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeCCCceEEEecCCc--EEEeeCC
Q 016940 51 GPGHSIAVTSKGV-VYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQ--VYAFGKD 122 (380)
Q Consensus 51 G~~~~~~l~~~G~-v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g~~~~~~lt~~G~--vy~~G~n 122 (380)
+....+..+.+|+ |+++|++..-..=. ...+...|..+.. .+..|..|++-..|.+.=++++. +|.+++.
T Consensus 14 ~G~t~i~~d~~gefi~tcgsdg~ir~~~-~~sd~e~P~ti~~-~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 14 GGLTLICYDPDGEFICTCGSDGDIRKWK-TNSDEEEPETIDI-SGELVSSIACYSNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred CceEEEEEcCCCCEEEEecCCCceEEee-cCCcccCCchhhc-cCceeEEEeecccceEEeeccceEEEeeCCCC
Confidence 3344455566654 44444432211100 0112244555543 45578889888888777777775 6666654
No 91
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=28.54 E-value=2.3e+02 Score=27.28 Aligned_cols=62 Identities=16% Similarity=0.311 Sum_probs=43.8
Q ss_pred eceEEecCCCe---EEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeCCCceEEEecCCcEEEee
Q 016940 44 ENSQAIAGPGH---SIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFG 120 (380)
Q Consensus 44 ~i~~i~~G~~~---~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g~~~~~~lt~~G~vy~~G 120 (380)
.+..+.+|.++ .+++..+|++..|..| ..+ .++ .....+.+|..=....+|++..|+||++.
T Consensus 161 ~~~~~~~~~~~~~~vl~i~~~g~l~~w~~~------------~Wt--~l~-~~~~~~~DIi~~kGkfYAvD~~G~l~~i~ 225 (373)
T PLN03215 161 ALVKVKEGDNHRDGVLGIGRDGKINYWDGN------------VLK--ALK-QMGYHFSDIIVHKGQTYALDSIGIVYWIN 225 (373)
T ss_pred EEEEeecCCCcceEEEEEeecCcEeeecCC------------eee--Ecc-CCCceeeEEEEECCEEEEEcCCCeEEEEe
Confidence 34455667775 6667788999888522 121 222 24557999998888899999999999986
No 92
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=27.67 E-value=2.5e+02 Score=27.04 Aligned_cols=62 Identities=13% Similarity=0.207 Sum_probs=42.6
Q ss_pred cEEEEEeCCCc---eEEEecCCcEEEeeCCCCCCCccCCCCceeecCCeeecccCCccEEEEeeCCCeEEEEecCCcEEE
Q 016940 96 RIIQAAAGAGR---TMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYT 172 (380)
Q Consensus 96 ~I~~V~~g~~~---~~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~~~~lt~~G~vy~ 172 (380)
.+..+.++..+ .+++..+|++.-|-.+.+ +.++ .....+.+|..=....+|++..|+||+
T Consensus 161 ~~~~~~~~~~~~~~vl~i~~~g~l~~w~~~~W----------------t~l~-~~~~~~~DIi~~kGkfYAvD~~G~l~~ 223 (373)
T PLN03215 161 ALVKVKEGDNHRDGVLGIGRDGKINYWDGNVL----------------KALK-QMGYHFSDIIVHKGQTYALDSIGIVYW 223 (373)
T ss_pred EEEEeecCCCcceEEEEEeecCcEeeecCCee----------------eEcc-CCCceeeEEEEECCEEEEEcCCCeEEE
Confidence 34445666665 677778888888854322 2222 234568888888888999999999997
Q ss_pred EE
Q 016940 173 FS 174 (380)
Q Consensus 173 ~G 174 (380)
+.
T Consensus 224 i~ 225 (373)
T PLN03215 224 IN 225 (373)
T ss_pred Ee
Confidence 64
No 93
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=26.37 E-value=6.2e+02 Score=24.83 Aligned_cols=20 Identities=20% Similarity=0.350 Sum_probs=15.4
Q ss_pred CCeEEEEeeCCCEEEEECCC
Q 016940 320 DYTTFVVSEDGDVYSFGCGE 339 (380)
Q Consensus 320 ~~~t~~l~~~g~v~~wG~n~ 339 (380)
+.|.++++-+|.||+||--.
T Consensus 233 SGcq~~vtpqg~i~vyGGYs 252 (521)
T KOG1230|consen 233 SGCQFSVTPQGGIVVYGGYS 252 (521)
T ss_pred CcceEEecCCCcEEEEcchh
Confidence 46777788799999998543
No 94
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=24.85 E-value=7.2e+02 Score=24.98 Aligned_cols=67 Identities=10% Similarity=-0.038 Sum_probs=31.9
Q ss_pred EEeCCCceEEEecCCcEEEeeCCCCCCCccCCCCceeecCCeeecccCCccEEEEeeCCCeEEEEecCCcE
Q 016940 100 AAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRV 170 (380)
Q Consensus 100 V~~g~~~~~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~~~~lt~~G~v 170 (380)
+.-|.-+++.+..+|.|.+ |.-+.--.-... .-....+.+++...+ .|+-|+-|..-.++=|..+.|
T Consensus 285 aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~--~y~k~r~~elPe~~G-~iRtv~e~~~di~vGTtrN~i 351 (626)
T KOG2106|consen 285 AHDGGVFSLCMLRDGTLLS-GGKDRKIILWDD--NYRKLRETELPEQFG-PIRTVAEGKGDILVGTTRNFI 351 (626)
T ss_pred ecCCceEEEEEecCccEee-cCccceEEeccc--cccccccccCchhcC-CeeEEecCCCcEEEeeccceE
Confidence 4556667888888888777 432221111111 111223333332222 367777666554444444433
No 95
>PLN02772 guanylate kinase
Probab=24.39 E-value=1.3e+02 Score=29.12 Aligned_cols=62 Identities=15% Similarity=0.053 Sum_probs=34.2
Q ss_pred ceEEEEeCCCCEEEEeC-CCCCCccCC------CCCCccccEEecccCCCcEEEEEecCCeEEEEeeCCCEEEEECC
Q 016940 269 WHAAVVGQDGRVCTWGW-GRYGCLGHG------NEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCG 338 (380)
Q Consensus 269 ~h~~~lt~~g~vy~wG~-n~~gqLG~~------~~~~~~~p~~i~~~~~~~i~~i~~G~~~t~~l~~~g~v~~wG~n 338 (380)
.|+++.- ..++|+||- |..+++... .+..-..|... +... -+-..||+++..+.+|++.+..
T Consensus 27 ~~tav~i-gdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~----G~~P---~~r~GhSa~v~~~~rilv~~~~ 95 (398)
T PLN02772 27 RETSVTI-GDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVL----GTGP---KPCKGYSAVVLNKDRILVIKKG 95 (398)
T ss_pred cceeEEE-CCEEEEEcccCCCccccceEEEEECCCCcEeccccc----CCCC---CCCCcceEEEECCceEEEEeCC
Confidence 3554444 579999994 443323211 12222333322 1111 1345799999999999999754
No 96
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=24.26 E-value=1.5e+02 Score=17.01 Aligned_cols=27 Identities=11% Similarity=-0.068 Sum_probs=20.9
Q ss_pred CCEEEEEecCCceEEEEEeCCCCEEEEE
Q 016940 202 IPVVQIAAGYCYLLALACQPSGMAVYSV 229 (380)
Q Consensus 202 ~~i~~i~~g~~~~~~l~~~~~G~~vy~~ 229 (380)
..|..++.......+++...|+ .|+.|
T Consensus 12 ~~i~~i~~~~~~~~~~s~~~D~-~i~vw 38 (39)
T PF00400_consen 12 SSINSIAWSPDGNFLASGSSDG-TIRVW 38 (39)
T ss_dssp SSEEEEEEETTSSEEEEEETTS-EEEEE
T ss_pred CcEEEEEEecccccceeeCCCC-EEEEE
Confidence 4588888888777777776788 88887
No 97
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=23.82 E-value=8.5e+02 Score=25.48 Aligned_cols=96 Identities=14% Similarity=0.054 Sum_probs=49.8
Q ss_pred cccCCCChHHHHhhhhhcCCCceeEEEEEeecceEeeeeceEEecCCCeEEEEecCCcEEEeeCCCCCCcCCCCCCCccc
Q 016940 6 AIFKPMTEAERQDLKQKCGGSWKLVLRFLLAGEACCRRENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWR 85 (380)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~i~~G~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~ 85 (380)
..|.|+.++...+....--+++.+.+. ..-+++-..+.++-++.|.||.+-.+..-.+-.
T Consensus 11 r~~~p~~~~l~~i~~~~~~~~~~~~v~------------lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~-------- 70 (726)
T KOG3621|consen 11 REWAPLTEVLERIPALLQPGFFPARVK------------LTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL-------- 70 (726)
T ss_pred hhccchhhhhhhhhhhhccccCcceEE------------EEEeecCCceEEEecccceEEEEecCchhhhcc--------
Confidence 345566666444444433344444433 334566667777778889999764432111111
Q ss_pred eeeccCCCC-CcEEEEEeCCCceEEEecCCcEEEeeCCC
Q 016940 86 PRPIRSLQG-IRIIQAAAGAGRTMLISDAGQVYAFGKDS 123 (380)
Q Consensus 86 p~~v~~~~~-~~I~~V~~g~~~~~~lt~~G~vy~~G~n~ 123 (380)
+... -.+ .-++.|++-.+..+|=+..|+|-.+=.|.
T Consensus 71 ~~~~--~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~ 107 (726)
T KOG3621|consen 71 KNEG--ATGITCVRSVSSVEYLVAAGTASGRVSVFQLNK 107 (726)
T ss_pred cccC--ccceEEEEEecchhHhhhhhcCCceEEeehhhc
Confidence 1000 011 13445566666666667777776665554
No 98
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=23.78 E-value=1.2e+02 Score=22.09 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=30.5
Q ss_pred cccEEecccCCCcEEEEEec-CCeEEEEeeCCCEEEEECCCCCCCCCCCC
Q 016940 300 SVPKVVQALNDVKAIHVATG-DYTTFVVSEDGDVYSFGCGESASLGHNAI 348 (380)
Q Consensus 300 ~~p~~i~~~~~~~i~~i~~G-~~~t~~l~~~g~v~~wG~n~~gqlG~~~~ 348 (380)
..|-.+.. +..=..|.|. ....++|++||.+|+-|--+.|.+=.+-.
T Consensus 7 t~Pa~i~~--~~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~ati~l~ 54 (81)
T PF03785_consen 7 THPASINL--GQTSISVSCDVPGSYVALSQDGDLYGKAIVNSGNATINLT 54 (81)
T ss_dssp E--SEEET--T-SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEEEEE-S
T ss_pred cccccccc--cccEEEEEecCCCcEEEEecCCEEEEEEEecCceEEEECC
Confidence 34555542 2345579999 89999999999999999666777655433
No 99
>PF11399 DUF3192: Protein of unknown function (DUF3192); InterPro: IPR021534 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=22.81 E-value=65 Score=24.60 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=21.6
Q ss_pred EEecCCeEEEEeeCCCEEEEECCCCCC
Q 016940 316 VATGDYTTFVVSEDGDVYSFGCGESAS 342 (380)
Q Consensus 316 i~~G~~~t~~l~~~g~v~~wG~n~~gq 342 (380)
+..-+..|-++.++++|.+||...+.|
T Consensus 75 ~TTkDECTplvF~n~~LvgWG~~ay~~ 101 (102)
T PF11399_consen 75 ITTKDECTPLVFKNGKLVGWGDDAYSQ 101 (102)
T ss_pred CccCCceEEEEEECCEEEEEcHHhhhc
Confidence 345667888999999999999876654
No 100
>PF13938 DUF4213: Domain of unknown function (DUF4213); PDB: 3NPG_A 3L5O_B.
Probab=22.09 E-value=1.2e+02 Score=22.10 Aligned_cols=23 Identities=35% Similarity=0.404 Sum_probs=19.0
Q ss_pred cCCccEEEEeeCCCeEEEEecCC
Q 016940 146 LKNIFVVQAAIGNFFTAVLSREG 168 (380)
Q Consensus 146 ~~~~~i~~i~~g~~~~~~lt~~G 168 (380)
+++.+|+++..|...+++..++|
T Consensus 9 ~~~~~V~~~~iG~~~t~V~~~~G 31 (87)
T PF13938_consen 9 APDIRVEDVCIGLHWTAVELSDG 31 (87)
T ss_dssp CGC-EEEEEEEBSSEEEEEETT-
T ss_pred CCCCEEEEEEEcCCEEEEEeCCC
Confidence 44678999999999999999998
No 101
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=21.48 E-value=9.4e+02 Score=25.53 Aligned_cols=84 Identities=19% Similarity=0.051 Sum_probs=42.4
Q ss_pred CCCCEEEEEecCCceEEEEEeCCCCEEEE------EecCCCCccCCCCCCCCCCCeeeeeee-cCCCccEEEE-----cc
Q 016940 200 ENIPVVQIAAGYCYLLALACQPSGMAVYS------VGCGLGGKLGHGSRTDEKHPRLIEQFQ-LLNLQPVVVA-----AG 267 (380)
Q Consensus 200 ~~~~i~~i~~g~~~~~~l~~~~~G~~vy~------~G~n~~gqlg~~~~~~~~~p~~~~~~~-~~~~~i~~i~-----~G 267 (380)
..+.|.+|..+.....+......| |++ ||.+.+-+.|.........|.--..+. .....|.++. ..
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~--v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~ 160 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRG--VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSES 160 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCc--EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCC
Confidence 345688888886655444432233 322 665543333332211112222111111 2233455553 23
Q ss_pred CceEEEEeCCCCEEEEeC
Q 016940 268 AWHAAVVGQDGRVCTWGW 285 (380)
Q Consensus 268 ~~h~~~lt~~g~vy~wG~ 285 (380)
..|.++||+|+.+..+--
T Consensus 161 ~~~l~vLtsdn~lR~y~~ 178 (717)
T PF10168_consen 161 DSHLVVLTSDNTLRLYDI 178 (717)
T ss_pred CCeEEEEecCCEEEEEec
Confidence 679999999998776654
No 102
>PF07312 DUF1459: Protein of unknown function (DUF1459); InterPro: IPR009924 This family consists of several hypothetical Caenorhabditis elegans proteins of around 85 residues in length. The function of this family is unknown.
Probab=21.12 E-value=62 Score=23.28 Aligned_cols=12 Identities=17% Similarity=0.603 Sum_probs=9.0
Q ss_pred CE-EEEECCCCCC
Q 016940 331 DV-YSFGCGESAS 342 (380)
Q Consensus 331 ~v-~~wG~n~~gq 342 (380)
.+ |+||+|.+-+
T Consensus 57 sv~waWGSNKnk~ 69 (84)
T PF07312_consen 57 SVYWAWGSNKNKQ 69 (84)
T ss_pred ceeeeeccCCCCC
Confidence 35 9999996554
No 103
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=20.34 E-value=9e+02 Score=24.43 Aligned_cols=29 Identities=7% Similarity=-0.102 Sum_probs=20.0
Q ss_pred eeceEEecCCCeEEEEecCCcEEEeeCCC
Q 016940 43 RENSQAIAGPGHSIAVTSKGVVYSFGSNS 71 (380)
Q Consensus 43 ~~i~~i~~G~~~~~~l~~~G~v~~~G~n~ 71 (380)
-.|.+.+-.....+-=+..|+|-.||.-.
T Consensus 62 vtVAkySPsG~yiASGD~sG~vRIWdtt~ 90 (603)
T KOG0318|consen 62 VTVAKYSPSGFYIASGDVSGKVRIWDTTQ 90 (603)
T ss_pred eEEEEeCCCceEEeecCCcCcEEEEeccC
Confidence 36667777755555556679999999643
No 104
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=20.12 E-value=2.9e+02 Score=25.25 Aligned_cols=18 Identities=17% Similarity=0.132 Sum_probs=13.8
Q ss_pred CCceEEEEEeCCCCEEEEEecC
Q 016940 211 YCYLLALACQPSGMAVYSVGCG 232 (380)
Q Consensus 211 ~~~~~~l~~~~~G~~vy~~G~n 232 (380)
+.|+++.- ++ ++|.||-.
T Consensus 80 YGHtvV~y---~d-~~yvWGGR 97 (392)
T KOG4693|consen 80 YGHTVVEY---QD-KAYVWGGR 97 (392)
T ss_pred cCceEEEE---cc-eEEEEcCc
Confidence 56788777 56 99999953
No 105
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=20.11 E-value=1e+03 Score=25.30 Aligned_cols=113 Identities=12% Similarity=0.101 Sum_probs=55.3
Q ss_pred CCCEEEEEecCCCCccCCCCC-------CC-CCCCeeeeeeecCCCccEEEEccCc-eEEEEeCCCCEEE------EeCC
Q 016940 222 SGMAVYSVGCGLGGKLGHGSR-------TD-EKHPRLIEQFQLLNLQPVVVAAGAW-HAAVVGQDGRVCT------WGWG 286 (380)
Q Consensus 222 ~G~~vy~~G~n~~gqlg~~~~-------~~-~~~p~~~~~~~~~~~~i~~i~~G~~-h~~~lt~~g~vy~------wG~n 286 (380)
++ .+|+|=.+...-+...-. .. ......+.........|.+|..... +.+||.-.-.|.+ ||.+
T Consensus 41 d~-~L~vWd~~e~~l~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~ 119 (717)
T PF10168_consen 41 DG-DLFVWDSSECCLLTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKN 119 (717)
T ss_pred CC-EEEEEECCCCEEEEEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCcc
Confidence 77 999997666543322100 00 0111111111223345666665444 3344444444332 7776
Q ss_pred CCCCccCCCCCCccccEEecccC---CCcEEEEE-----ecCCeEEEEeeCCCEEEE
Q 016940 287 RYGCLGHGNEECESVPKVVQALN---DVKAIHVA-----TGDYTTFVVSEDGDVYSF 335 (380)
Q Consensus 287 ~~gqLG~~~~~~~~~p~~i~~~~---~~~i~~i~-----~G~~~t~~l~~~g~v~~w 335 (380)
.+-+-|.....+...|.--..+. ...|.++. ..+.|-++|++|+.+-.+
T Consensus 120 ~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y 176 (717)
T PF10168_consen 120 GEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLY 176 (717)
T ss_pred ccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEE
Confidence 54444444344444444322222 23466663 357899999999875544
Done!