Query 016940
Match_columns 380
No_of_seqs 177 out of 1824
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 06:18:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016940.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016940hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4d9s_A UVB-resistance protein 100.0 9.8E-66 3.3E-70 498.0 33.2 338 11-358 11-376 (406)
2 4d9s_A UVB-resistance protein 100.0 4.7E-63 1.6E-67 479.2 34.9 310 42-359 15-325 (406)
3 3kci_A Probable E3 ubiquitin-p 100.0 6.7E-63 2.3E-67 475.7 31.1 307 43-357 53-363 (389)
4 1a12_A RCC1, regulator of chro 100.0 6.7E-60 2.3E-64 458.4 32.9 306 43-358 59-384 (413)
5 3mvd_K Regulator of chromosome 100.0 2.2E-59 7.4E-64 456.3 35.5 328 16-359 24-394 (423)
6 3of7_A Regulator of chromosome 100.0 3.2E-59 1.1E-63 460.8 32.4 305 43-358 67-425 (473)
7 3kci_A Probable E3 ubiquitin-p 100.0 3.4E-59 1.1E-63 449.9 23.7 304 47-358 5-312 (389)
8 1a12_A RCC1, regulator of chro 100.0 3.3E-57 1.1E-61 439.4 29.2 295 47-351 12-326 (413)
9 3mvd_K Regulator of chromosome 100.0 2.1E-56 7E-61 435.3 31.0 297 41-352 22-335 (423)
10 3of7_A Regulator of chromosome 100.0 3E-56 1E-60 439.7 25.3 297 43-348 10-350 (473)
11 3qhy_B Beta-lactamase inhibito 100.0 4.9E-49 1.7E-53 362.0 25.5 230 43-346 24-253 (282)
12 3qhy_B Beta-lactamase inhibito 100.0 7.5E-45 2.6E-49 334.1 25.6 238 16-333 24-276 (282)
13 1p22_A F-BOX/WD-repeat protein 97.2 0.17 5.9E-06 47.7 29.8 228 44-336 135-362 (435)
14 1p22_A F-BOX/WD-repeat protein 96.9 0.3 1E-05 46.0 26.4 240 44-339 175-414 (435)
15 2ovr_B FBW7, F-BOX/WD repeat p 96.6 0.49 1.7E-05 44.5 27.8 189 96-339 201-391 (445)
16 1k3i_A Galactose oxidase precu 96.3 1 3.5E-05 45.2 25.3 72 269-342 458-534 (656)
17 4gbf_A Phikz131; 7-bladed beta 96.3 0.011 3.7E-07 51.2 7.7 72 43-127 309-380 (400)
18 1gxr_A ESG1, transducin-like e 96.2 0.65 2.2E-05 41.2 26.1 199 51-287 10-214 (337)
19 2ovr_B FBW7, F-BOX/WD repeat p 96.0 1 3.6E-05 42.3 26.3 224 48-339 125-348 (445)
20 3k26_A Polycomb protein EED; W 95.6 1.2 4.2E-05 39.9 24.0 249 54-337 87-364 (366)
21 4aez_A CDC20, WD repeat-contai 95.4 1.7 5.7E-05 40.2 25.4 147 47-231 98-246 (401)
22 2zwa_A Leucine carboxyl methyl 95.2 3 0.0001 42.2 22.1 18 321-338 657-674 (695)
23 4gbf_A Phikz131; 7-bladed beta 95.2 0.039 1.3E-06 47.8 6.5 71 260-343 310-380 (400)
24 3k26_A Polycomb protein EED; W 94.6 2.4 8.2E-05 37.9 20.4 210 44-287 20-260 (366)
25 2zwa_A Leucine carboxyl methyl 94.2 2.5 8.6E-05 42.8 18.5 18 269-286 657-674 (695)
26 3odt_A Protein DOA1; ubiquitin 94.0 2.9 9.9E-05 36.4 28.2 187 95-339 105-296 (313)
27 1sq9_A Antiviral protein SKI8; 93.9 3.6 0.00012 37.4 22.3 72 201-287 233-322 (397)
28 1gxr_A ESG1, transducin-like e 93.0 4.4 0.00015 35.5 27.0 148 96-287 143-296 (337)
29 3v7d_B Cell division control p 92.5 6.9 0.00023 36.6 30.7 244 44-339 164-421 (464)
30 3mmy_A MRNA export factor; mRN 91.8 6.6 0.00023 34.8 21.6 194 94-339 39-247 (368)
31 3v7d_B Cell division control p 91.2 9.5 0.00032 35.6 27.7 238 48-340 128-382 (464)
32 3no0_A DNA gyrase subunit A; D 90.3 9 0.00031 33.8 19.6 219 93-346 22-253 (276)
33 3zwl_B Eukaryotic translation 89.4 11 0.00037 33.4 26.1 203 44-287 34-249 (369)
34 1sq9_A Antiviral protein SKI8; 89.3 12 0.00042 33.7 26.7 255 43-339 17-322 (397)
35 3no0_A DNA gyrase subunit A; D 89.0 11 0.00039 33.1 19.6 207 51-292 34-251 (276)
36 3vl1_A 26S proteasome regulato 88.6 14 0.00049 33.6 25.4 141 49-231 65-210 (420)
37 2aq5_A Coronin-1A; WD40 repeat 87.0 18 0.00061 33.0 22.1 156 100-286 40-206 (402)
38 1pgu_A Actin interacting prote 86.9 23 0.00078 34.1 24.7 150 96-286 162-327 (615)
39 1pgu_A Actin interacting prote 86.8 23 0.00078 34.1 27.7 148 151-336 449-611 (615)
40 3i2n_A WD repeat-containing pr 86.7 16 0.00055 32.1 23.5 197 44-287 67-291 (357)
41 4aez_A CDC20, WD repeat-contai 86.5 19 0.00065 32.8 18.8 151 151-339 96-248 (401)
42 2aq5_A Coronin-1A; WD40 repeat 86.3 19 0.00066 32.7 28.3 157 48-231 40-205 (402)
43 2xyi_A Probable histone-bindin 86.2 21 0.00071 33.0 26.6 261 44-338 130-409 (430)
44 4aow_A Guanine nucleotide-bind 86.2 17 0.00057 31.8 24.2 69 202-286 216-285 (340)
45 3sfz_A APAF-1, apoptotic pepti 83.7 50 0.0017 35.3 22.9 196 96-337 1046-1247(1249)
46 3jro_A Fusion protein of prote 83.6 40 0.0014 34.0 23.3 200 44-287 11-238 (753)
47 3uc1_A DNA gyrase subunit A; D 83.6 25 0.00086 31.7 20.4 226 96-345 43-285 (327)
48 1q7f_A NHL, brain tumor CG1071 83.3 21 0.00071 30.6 22.6 17 270-286 210-226 (286)
49 3jrp_A Fusion protein of prote 83.1 24 0.00083 31.2 28.6 242 44-338 13-286 (379)
50 2vpj_A Kelch-like protein 12; 83.0 23 0.00078 30.8 13.9 16 269-285 246-261 (301)
51 3jrp_A Fusion protein of prote 82.9 25 0.00084 31.1 23.1 202 44-286 57-286 (379)
52 1k8k_C P40, ARP2/3 complex 41 82.9 25 0.00085 31.1 23.7 252 44-339 10-274 (372)
53 4g56_B MGC81050 protein; prote 81.7 29 0.001 31.2 24.2 69 202-285 140-211 (357)
54 3ii7_A Kelch-like protein 7; p 79.8 16 0.00053 32.1 11.1 17 269-286 240-256 (306)
55 3odt_A Protein DOA1; ubiquitin 77.7 33 0.0011 29.3 24.6 219 54-339 31-255 (313)
56 4a11_B DNA excision repair pro 77.2 40 0.0014 30.1 24.9 216 94-339 43-276 (408)
57 2xyi_A Probable histone-bindin 77.0 45 0.0016 30.7 20.7 205 54-287 196-410 (430)
58 3vl1_A 26S proteasome regulato 76.8 43 0.0015 30.3 25.5 72 202-287 291-365 (420)
59 4g56_B MGC81050 protein; prote 75.8 44 0.0015 29.9 26.0 191 96-339 141-343 (357)
60 2xn4_A Kelch-like protein 2; s 75.7 39 0.0013 29.3 12.9 17 269-286 244-260 (302)
61 4a11_B DNA excision repair pro 75.3 45 0.0015 29.7 29.2 254 44-344 101-370 (408)
62 3mkq_A Coatomer beta'-subunit; 74.6 73 0.0025 31.9 27.0 234 44-339 15-259 (814)
63 3jro_A Fusion protein of prote 73.4 80 0.0027 31.8 22.1 203 44-287 55-285 (753)
64 2uvk_A YJHT; unknown function, 73.1 51 0.0017 29.4 15.6 17 158-175 110-126 (357)
65 3uc1_A DNA gyrase subunit A; D 72.8 54 0.0018 29.5 23.3 220 48-292 49-284 (327)
66 2pm9_A Protein WEB1, protein t 71.9 56 0.0019 29.3 23.2 121 95-231 68-195 (416)
67 4ery_A WD repeat-containing pr 71.7 49 0.0017 28.5 25.8 190 44-287 25-223 (312)
68 4asc_A Kelch repeat and BTB do 70.9 53 0.0018 28.7 14.3 19 51-69 35-53 (315)
69 3f3f_A Nucleoporin SEH1; struc 70.9 50 0.0017 28.3 28.8 121 44-177 13-143 (351)
70 1yfq_A Cell cycle arrest prote 69.8 55 0.0019 28.4 27.2 195 53-288 24-226 (342)
71 3i2n_A WD repeat-containing pr 68.7 59 0.002 28.3 23.1 203 52-285 129-351 (357)
72 1wp5_A Topoisomerase IV; broke 68.5 66 0.0023 28.8 22.7 235 93-347 37-285 (323)
73 2pm9_A Protein WEB1, protein t 67.5 69 0.0024 28.7 18.5 72 202-288 263-338 (416)
74 3p6j_A De novo designed beta-t 66.2 39 0.0013 26.4 8.8 107 148-282 29-138 (142)
75 1q7f_A NHL, brain tumor CG1071 65.5 62 0.0021 27.4 17.5 17 160-176 210-226 (286)
76 1r5m_A SIR4-interacting protei 65.5 75 0.0026 28.3 28.8 71 201-287 289-361 (425)
77 3mmy_A MRNA export factor; mRN 65.2 69 0.0024 27.8 21.7 193 43-287 40-247 (368)
78 1zgk_A Kelch-like ECH-associat 63.9 32 0.0011 30.1 9.1 16 269-285 255-270 (308)
79 3p6j_A De novo designed beta-t 61.9 55 0.0019 25.5 10.1 103 44-171 31-137 (142)
80 4ggc_A P55CDC, cell division c 61.0 77 0.0026 27.0 18.6 103 158-286 35-137 (318)
81 4gqb_B Methylosome protein 50; 60.7 92 0.0031 27.7 28.1 230 45-337 85-329 (344)
82 1xip_A Nucleoporin NUP159; bet 59.9 53 0.0018 30.4 10.0 98 97-229 90-187 (388)
83 3zwl_B Eukaryotic translation 59.6 88 0.003 27.2 25.7 69 150-231 177-247 (369)
84 4aow_A Guanine nucleotide-bind 59.2 86 0.003 26.9 25.9 73 43-122 39-116 (340)
85 1erj_A Transcriptional repress 58.4 1.1E+02 0.0036 27.7 23.3 167 96-285 208-387 (393)
86 1got_B GT-beta; complex (GTP-b 57.5 99 0.0034 27.1 23.7 180 52-283 154-339 (340)
87 1yfq_A Cell cycle arrest prote 57.5 93 0.0032 26.8 27.7 152 54-233 71-225 (342)
88 4ery_A WD repeat-containing pr 57.2 92 0.0032 26.7 27.1 189 96-337 109-310 (312)
89 1k3i_A Galactose oxidase precu 56.3 42 0.0014 33.3 9.3 18 268-285 288-305 (656)
90 1r5m_A SIR4-interacting protei 53.7 1.2E+02 0.0041 26.9 27.6 110 202-338 248-360 (425)
91 3ow8_A WD repeat-containing pr 52.2 1.2E+02 0.0041 26.4 26.0 108 202-336 207-318 (321)
92 3sfz_A APAF-1, apoptotic pepti 52.0 2.4E+02 0.0082 29.9 22.8 62 263-336 847-910 (1249)
93 3mkq_A Coatomer beta'-subunit; 51.2 2E+02 0.0067 28.6 26.3 183 53-287 68-259 (814)
94 1zvt_A Topoisomerase IV subuni 51.0 1.2E+02 0.0041 26.1 11.6 124 48-183 40-169 (256)
95 1suu_A DNA gyrase subunit A; t 50.9 1.3E+02 0.0045 26.6 26.0 265 53-346 9-290 (312)
96 1suu_A DNA gyrase subunit A; t 50.4 1.3E+02 0.0046 26.5 22.9 220 104-346 8-238 (312)
97 1xip_A Nucleoporin NUP159; bet 49.5 1.6E+02 0.0054 27.1 12.6 63 151-230 90-152 (388)
98 2vdu_B TRNA (guanine-N(7)-)-me 48.7 1.6E+02 0.0055 26.9 15.9 116 202-339 150-271 (450)
99 3l6v_A GYRA, DNA gyrase subuni 48.7 1.6E+02 0.0055 26.9 23.2 232 93-346 44-323 (370)
100 1vyh_C Platelet-activating fac 47.2 1.6E+02 0.0056 26.6 26.2 148 44-231 110-263 (410)
101 3ow8_A WD repeat-containing pr 47.2 1.4E+02 0.0049 25.9 25.7 233 41-338 31-278 (321)
102 3no2_A Uncharacterized protein 46.3 1.4E+02 0.0048 25.6 22.3 32 34-67 22-53 (276)
103 3gre_A Serine/threonine-protei 45.9 1.7E+02 0.0058 26.4 19.2 118 95-231 112-243 (437)
104 4gga_A P55CDC, cell division c 45.8 1.7E+02 0.0059 26.4 24.8 50 276-337 342-393 (420)
105 2ymu_A WD-40 repeat protein; u 44.9 2E+02 0.0069 27.0 25.0 183 96-336 346-536 (577)
106 3no2_A Uncharacterized protein 44.2 1.5E+02 0.0052 25.3 23.7 168 146-346 85-268 (276)
107 3fvz_A Peptidyl-glycine alpha- 44.0 1.6E+02 0.0056 25.6 22.3 26 46-71 19-44 (329)
108 3ei3_B DNA damage-binding prot 42.2 1.8E+02 0.0061 25.6 22.0 196 43-287 74-282 (383)
109 1zi0_A DNA gyrase subunit A; b 41.8 1.8E+02 0.0062 25.6 25.4 218 48-290 49-280 (307)
110 4e54_B DNA damage-binding prot 40.3 2.1E+02 0.0073 25.9 19.0 30 202-232 297-326 (435)
111 1k8k_C P40, ARP2/3 complex 41 40.2 1.8E+02 0.0063 25.1 28.3 167 95-287 97-274 (372)
112 2woz_A Kelch repeat and BTB do 39.9 1.8E+02 0.0063 25.1 11.2 16 269-285 151-166 (318)
113 3l6v_A GYRA, DNA gyrase subuni 39.2 2.3E+02 0.0077 25.9 26.7 130 47-185 52-188 (370)
114 3vu4_A KMHSV2; beta-propeller 39.2 2E+02 0.0069 25.3 21.3 161 43-232 101-270 (355)
115 3v9f_A Two-component system se 39.1 3.1E+02 0.011 27.4 20.8 18 322-339 631-648 (781)
116 2ymu_A WD-40 repeat protein; u 39.0 2.5E+02 0.0085 26.3 26.3 144 96-284 387-536 (577)
117 2vpj_A Kelch-like protein 12; 37.5 1.9E+02 0.0066 24.6 17.8 18 269-287 199-216 (301)
118 4e54_B DNA damage-binding prot 36.9 2.4E+02 0.0082 25.5 19.6 69 42-121 119-194 (435)
119 2xzm_R RACK1; ribosome, transl 36.7 2.1E+02 0.0072 24.9 21.1 68 150-231 78-147 (343)
120 3dw8_B Serine/threonine-protei 35.9 2.4E+02 0.0082 25.2 18.5 31 201-232 226-257 (447)
121 1zvt_A Topoisomerase IV subuni 35.8 2.1E+02 0.0071 24.5 14.9 158 55-239 5-169 (256)
122 3dm0_A Maltose-binding peripla 35.6 3.2E+02 0.011 26.6 23.7 111 96-231 474-590 (694)
123 4ggc_A P55CDC, cell division c 34.2 2.1E+02 0.0071 24.0 24.2 48 276-335 262-311 (318)
124 4gga_A P55CDC, cell division c 34.0 2.6E+02 0.009 25.1 26.7 143 52-231 115-259 (420)
125 1rwi_B Serine/threonine-protei 33.9 2E+02 0.0067 23.7 17.5 16 270-285 195-210 (270)
126 3gre_A Serine/threonine-protei 33.6 2.6E+02 0.009 25.0 22.1 102 105-232 183-291 (437)
127 1erj_A Transcriptional repress 33.5 2.6E+02 0.0089 24.9 26.4 82 202-286 257-340 (393)
128 3q7x_A De novo designed beta-t 33.1 1.6E+02 0.0055 22.4 12.6 100 48-171 11-112 (132)
129 4gqb_B Methylosome protein 50; 32.9 2.5E+02 0.0087 24.7 20.4 113 150-286 84-200 (344)
130 1zi0_A DNA gyrase subunit A; b 32.4 2.6E+02 0.0088 24.6 23.2 229 93-345 40-283 (307)
131 3pbp_A Nucleoporin NUP82; beta 30.2 2.3E+02 0.0078 26.7 9.0 67 43-119 125-208 (452)
132 1wp5_A Topoisomerase IV; broke 29.5 3E+02 0.01 24.4 25.1 224 48-292 46-282 (323)
133 3dw8_B Serine/threonine-protei 28.8 3.1E+02 0.011 24.4 16.5 27 96-122 228-257 (447)
134 4asc_A Kelch repeat and BTB do 28.4 1.6E+02 0.0056 25.4 7.7 18 268-286 140-157 (315)
135 1l0q_A Surface layer protein; 26.5 3.2E+02 0.011 23.8 19.1 26 204-230 160-186 (391)
136 1zvu_A Topoisomerase IV subuni 22.9 4.8E+02 0.017 26.1 10.2 162 51-239 471-639 (716)
137 3ii7_A Kelch-like protein 7; p 22.8 3.5E+02 0.012 22.9 10.8 17 269-286 94-110 (306)
138 2ynn_A Coatomer subunit beta'; 22.4 3.5E+02 0.012 22.8 25.1 236 46-331 61-303 (304)
139 1zvu_A Topoisomerase IV subuni 21.8 6.2E+02 0.021 25.4 11.6 123 49-183 511-639 (716)
140 2j04_A TAU60, YPL007P, hypothe 20.9 5.9E+02 0.02 24.8 21.2 159 150-338 87-253 (588)
No 1
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=9.8e-66 Score=498.02 Aligned_cols=338 Identities=27% Similarity=0.489 Sum_probs=302.1
Q ss_pred CChHHHHhhhhhcCCCceeEEEEEeecce---------------------------EeeeeceEEecCCCeEEEEecCC-
Q 016940 11 MTEAERQDLKQKCGGSWKLVLRFLLAGEA---------------------------CCRRENSQAIAGPGHSIAVTSKG- 62 (380)
Q Consensus 11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---------------------------~~~~~i~~i~~G~~~~~~l~~~G- 62 (380)
+.+...++++++||+.|++++.. ++++ +...+|++|+||..|+++|+++|
T Consensus 11 v~~~~~~v~~ia~G~~hs~al~~--~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg 88 (406)
T 4d9s_A 11 VTAPPRKVLIISAGASHSVALLS--GDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGM 88 (406)
T ss_dssp ----CCCEEEEEECSSEEEEEET--TTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTT
T ss_pred CCCCccceEEEecCCCeEEEEEe--CCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCC
Confidence 33444688999999999999875 2211 11137999999999999999986
Q ss_pred cEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeCCCceEEEecCCcEEEeeCCCCCCCccCCCCceeecCCee
Q 016940 63 VVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQL 142 (380)
Q Consensus 63 ~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g~~~~~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~~~p~~ 142 (380)
+||+||.|.+||||.++......|.+++.+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+. ......|+.
T Consensus 89 ~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~--~~~~~~p~~ 166 (406)
T 4d9s_A 89 EVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGD--TEDSLVPQK 166 (406)
T ss_dssp EEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSS--CCCEEEEEE
T ss_pred EEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCC--CCCcccceE
Confidence 999999999999999999888899999999888999999999999999999999999999999999987 556677999
Q ss_pred ecccCCccEEEEeeCCCeEEEEecCCcEEEEEeCCCCccCCCCCCCcccccccccccCCCCEEEEEecCCceEEEEEeCC
Q 016940 143 VESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPS 222 (380)
Q Consensus 143 v~~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i~~g~~~~~~l~~~~~ 222 (380)
+..+.+.+|++|+||.+|+++|+++|+||+||+|.++|||.+.......|.++.. +...+|++|+||.+|+++|+. +
T Consensus 167 v~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~-~~~~~i~~va~G~~ht~~l~~--~ 243 (406)
T 4d9s_A 167 IQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTS-TGGEKMSMVACGWRHTISVSY--S 243 (406)
T ss_dssp CGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCC-STTCCEEEEEECSSEEEEEET--T
T ss_pred ecccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecc-cCCceEEEEEECCCcEEEEcC--C
Confidence 9888888999999999999999999999999999999999999888888988876 667889999999999999998 9
Q ss_pred CCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEccCceEEEEeCCCCEEEEeCCCCCCccCCCCCCcccc
Q 016940 223 GMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVP 302 (380)
Q Consensus 223 G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~p 302 (380)
| +||+||.|.++|||.++......|.++..+ .+.+|++|+||.+|++||+++|+||+||+|.+||||.++......|
T Consensus 244 G-~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~--~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p 320 (406)
T 4d9s_A 244 G-ALYTYGWSKYGQLGHGDLEDHLIPHKLEAL--SNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSP 320 (406)
T ss_dssp C-CEEEEECCTTSTTCSSSCCCEEEEEECGGG--TTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEE
T ss_pred C-CEEEeeCCCCCCCCCCCCcCccccEEeccc--CCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccC
Confidence 9 999999999999999988777778877654 3457999999999999999999999999999999999998888899
Q ss_pred EEecccCCCcEEEEEecCCeEEEEeeCCCEEEEECCCCCCCCCCCCCCCCccchhh
Q 016940 303 KVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQVCSLLF 358 (380)
Q Consensus 303 ~~i~~~~~~~i~~i~~G~~~t~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~~~~~~ 358 (380)
.++..+.+.+|++|+||.+|+++|+++|+||+||+|++||||++...+...|..+.
T Consensus 321 ~~v~~~~~~~v~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~ 376 (406)
T 4d9s_A 321 VQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIE 376 (406)
T ss_dssp EEECCGGGCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECG
T ss_pred EEEeccCCCcEEEEEeCCCeEEEEeCCCCEEEecCCCCCccCCCCCCCCcCCEEee
Confidence 99987777889999999999999999999999999999999999988776654443
No 2
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=4.7e-63 Score=479.25 Aligned_cols=310 Identities=29% Similarity=0.471 Sum_probs=286.8
Q ss_pred eeeceEEecCCCeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeCCCceEEEecCC-cEEEee
Q 016940 42 RRENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAG-QVYAFG 120 (380)
Q Consensus 42 ~~~i~~i~~G~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g~~~~~~lt~~G-~vy~~G 120 (380)
.++|++|+||..|+++|+++|+||+||.|.+||||.++......|.+++.+.+.+|++|+||..|+++|+++| +||+||
T Consensus 15 ~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG 94 (406)
T 4d9s_A 15 PRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWG 94 (406)
T ss_dssp CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEE
T ss_pred ccceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEc
Confidence 4689999999999999999999999999999999999999999999999888889999999999999999986 999999
Q ss_pred CCCCCCCccCCCCceeecCCeeecccCCccEEEEeeCCCeEEEEecCCcEEEEEeCCCCccCCCCCCCcccccccccccC
Q 016940 121 KDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLE 200 (380)
Q Consensus 121 ~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~ 200 (380)
.|.+||||.+. ......|.++..+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+.......|.++.. +.
T Consensus 95 ~n~~GqLG~g~--~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~-~~ 171 (406)
T 4d9s_A 95 WGDFGRLGHGN--SSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQA-FE 171 (406)
T ss_dssp CCGGGTTCSSS--CCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGG-GT
T ss_pred CCCCcCCCCCC--CCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecc-cC
Confidence 99999999986 4566778888888888999999999999999999999999999999999999888888988886 77
Q ss_pred CCCEEEEEecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEccCceEEEEeCCCCE
Q 016940 201 NIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRV 280 (380)
Q Consensus 201 ~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~v 280 (380)
+.+|++|+||.+|+++|++ +| +||+||.|.++|||.+.......|..+..+ ...+|++|+||.+|+++|+++|+|
T Consensus 172 ~~~i~~va~G~~hs~alt~--~G-~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~--~~~~i~~va~G~~ht~~l~~~G~v 246 (406)
T 4d9s_A 172 GIRIKMVAAGAEHTAAVTE--DG-DLYGWGWGRYGNLGLGDRTDRLVPERVTST--GGEKMSMVACGWRHTISVSYSGAL 246 (406)
T ss_dssp TCCEEEEEECSSEEEEEET--TS-CEEEEECCTTSTTCSSSSCCEEEEEECCCS--TTCCEEEEEECSSEEEEEETTCCE
T ss_pred CCcEEEEecCCCeEEEEeC--CC-CEEEeeCCCCCCCCCCCCCCcCccEEeccc--CCceEEEEEECCCcEEEEcCCCCE
Confidence 7889999999999999998 99 999999999999999988777778777554 345799999999999999999999
Q ss_pred EEEeCCCCCCccCCCCCCccccEEecccCCCcEEEEEecCCeEEEEeeCCCEEEEECCCCCCCCCCCCCCCCccchhhh
Q 016940 281 CTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQVCSLLFL 359 (380)
Q Consensus 281 y~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~t~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~~~~~~~ 359 (380)
|+||.|.++|||.++......|.+++.+.+.+|++|+||.+|+++|+++|+||+||+|.+||||.+...+...|..+.+
T Consensus 247 ~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~ 325 (406)
T 4d9s_A 247 YTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRF 325 (406)
T ss_dssp EEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECC
T ss_pred EEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEec
Confidence 9999999999999998889999999999988999999999999999999999999999999999998877766665543
No 3
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=6.7e-63 Score=475.67 Aligned_cols=307 Identities=32% Similarity=0.516 Sum_probs=282.1
Q ss_pred eeceEEecCCCeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCC--cEEEEEeCCCceEEEecCCcEEEee
Q 016940 43 RENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGI--RIIQAAAGAGRTMLISDAGQVYAFG 120 (380)
Q Consensus 43 ~~i~~i~~G~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~--~I~~V~~g~~~~~~lt~~G~vy~~G 120 (380)
.+|++|+||..|+++|++||+||+||.|.+||||.++......|.+++.+.+. ++++|+||..|+++|+++|+||+||
T Consensus 53 ~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG 132 (389)
T 3kci_A 53 LRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWG 132 (389)
T ss_dssp TCEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEE
T ss_pred CceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEe
Confidence 37899999999999999999999999999999999998888899999887765 4578899999999999999999999
Q ss_pred CCCCCCCccCCCCceeecCCeeecccCCccEEEEeeCCCeEEEEecCCcEEEEEeCCCCccCCCCCCCcccccccccccC
Q 016940 121 KDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLE 200 (380)
Q Consensus 121 ~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~ 200 (380)
.|.+||||.+. ......|+.++.+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+.......|.++.. +.
T Consensus 133 ~n~~GqLG~g~--~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~-~~ 209 (389)
T 3kci_A 133 EAEDGKLGHGN--RSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEA-LQ 209 (389)
T ss_dssp CCGGGTTCSSS--CCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGG-GT
T ss_pred CCCCCcCCCCC--CccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecc-cC
Confidence 99999999986 5566789999988888999999999999999999999999999999999999888888988876 77
Q ss_pred CCCEEEEEecC--CceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEccCceEEEEeCCC
Q 016940 201 NIPVVQIAAGY--CYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDG 278 (380)
Q Consensus 201 ~~~i~~i~~g~--~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g 278 (380)
+.+|++|+||. +|+++|++ +| +||+||.|.++|||.+.......|.++..+ .+.+|++|+||.+|++||+++|
T Consensus 210 ~~~v~~ia~G~g~~~t~~l~~--~G-~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~--~~~~v~~v~~G~~hs~alt~~G 284 (389)
T 3kci_A 210 GHRVVDIACGSGDAQTLCLTD--DD-TVWSWGDGDYGKLGRGGSDGCKVPMKIDSL--TGLGVVKVECGSQFSVALTKSG 284 (389)
T ss_dssp TSCEEEEEECCSSCEEEEEET--TT-EEEEEECCGGGTTSSSSCCCEEEEEECGGG--TTSCEEEEEEETTEEEEEETTS
T ss_pred CCeEEEEEEcCCCcEEEEEcc--CC-EEEEEeCCCCCCCCCCCCCCccccEEeccc--CCCcEEEEeCCCCEEEEEeCCC
Confidence 88899999995 89999998 99 999999999999999987777778777654 3457999999999999999999
Q ss_pred CEEEEeCCCCCCccCCCCCCccccEEecccCCCcEEEEEecCCeEEEEeeCCCEEEEECCCCCCCCCCCCCCCCccchh
Q 016940 279 RVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQVCSLL 357 (380)
Q Consensus 279 ~vy~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~t~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~~~~~ 357 (380)
+||+||.|.++|||.+.......|.+++.+.+.+|++|+||.+|+++|+++|+||+||+|++||||.+...+...|..+
T Consensus 285 ~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v 363 (389)
T 3kci_A 285 AVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLV 363 (389)
T ss_dssp CEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEEC
T ss_pred eEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccCeEEEECCCCCEEEeeCCCCCcCCCCCCCCccCcEEe
Confidence 9999999999999999988899999999998889999999999999999999999999999999999988776665555
No 4
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=6.7e-60 Score=458.40 Aligned_cols=306 Identities=26% Similarity=0.417 Sum_probs=262.8
Q ss_pred eeceEEecCCCeEEEEecCCcEEEeeCCCCCCcCCCCCC--CccceeeccCCCCCcEEEEEeCCCceEEEecCCcEEEee
Q 016940 43 RENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTE--EEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFG 120 (380)
Q Consensus 43 ~~i~~i~~G~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~--~~~~p~~v~~~~~~~I~~V~~g~~~~~~lt~~G~vy~~G 120 (380)
.+|++|+||..|+++|+++|+||+||.|.+||||.+... ....|.++.. ..+|++|+||..|+++|+++|+||+||
T Consensus 59 ~~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~l--~~~i~~va~G~~hs~alt~~G~v~~wG 136 (413)
T 1a12_A 59 EDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVEL--QEKVVQVSAGDSHTAALTDDGRVFLWG 136 (413)
T ss_dssp SCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECCC--CSCEEEEEECSSEEEEEETTSCEEEEE
T ss_pred CCeEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEecC--CCcEEEEecCCCeEEEEcCCCcEEEee
Confidence 579999999999999999999999999999999998863 4567888853 238999999999999999999999999
Q ss_pred C--CCCCCCccCCCCceeecCCeeecccCCccEEEEeeCCCeEEEEecCCcEEEEEeCCCCccCCCCCCC----------
Q 016940 121 K--DSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPN---------- 188 (380)
Q Consensus 121 ~--n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~---------- 188 (380)
. |.+||||.+.. ......|.++ +.+.+|++|+||.+|+++|+++|+||+||.|.+||||......
T Consensus 137 ~~~n~~GqlG~~~~-~~~~~~P~~v--~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~ 213 (413)
T 1a12_A 137 SFRDNNGVIGLLEP-MKKSMVPVQV--QLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLE 213 (413)
T ss_dssp CEEETTEEEESSBB-TBCEEEEEEE--CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHH
T ss_pred CCcCCCCccCcCCc-cccccCCEEe--cCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCcccccccccccccc
Confidence 9 99999998862 2233457666 4456799999999999999999999999999999999875422
Q ss_pred -ccccccccccc----CCCCEEEEEecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEE
Q 016940 189 -DVEPHPLLGTL----ENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVV 263 (380)
Q Consensus 189 -~~~p~~v~~~~----~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~ 263 (380)
...|..+..+. ...+|++|+||.+|+++|++ +| +||+||.|.++|||.+.......|..+..+.....+|++
T Consensus 214 ~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~--~G-~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ 290 (413)
T 1a12_A 214 RLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISH--EG-HVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVG 290 (413)
T ss_dssp HHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEET--TC-CEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEE
T ss_pred ccccCceEeeccccccCCccEEEEEeCCCEEEEEeC--CC-CEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEE
Confidence 13454444311 34679999999999999998 99 999999999999999888777788888766544457999
Q ss_pred EEccCceEEEEeCCCCEEEEeCCCCCCccCC-CCCCccccEEecccCCCcEEEEEecCCeEEEEeeCCCEEEEECCCCCC
Q 016940 264 VAAGAWHAAVVGQDGRVCTWGWGRYGCLGHG-NEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESAS 342 (380)
Q Consensus 264 i~~G~~h~~~lt~~g~vy~wG~n~~gqLG~~-~~~~~~~p~~i~~~~~~~i~~i~~G~~~t~~l~~~g~v~~wG~n~~gq 342 (380)
|+||.+|+++|+++|+||+||.|.+||||.+ +......|++++.+. +|++|+||.+|+++|+++|+||+||.|++||
T Consensus 291 ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~--~v~~v~~G~~hs~alt~~G~v~~wG~n~~gq 368 (413)
T 1a12_A 291 FSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLP--AVSSVACGASVGYAVTKDGRVFAWGMGTNYQ 368 (413)
T ss_dssp EEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSS--SEEEEEECSSEEEEEETTSCEEEEECCTTST
T ss_pred EecccceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecccC--ceeEEEECcceEEEEeCCCCEEEecCCCCCC
Confidence 9999999999999999999999999999998 466778899998766 7999999999999999999999999999999
Q ss_pred CCCCCCCCCCccchhh
Q 016940 343 LGHNAIADGQVCSLLF 358 (380)
Q Consensus 343 lG~~~~~~~~~~~~~~ 358 (380)
||.+...+...|..+.
T Consensus 369 LG~g~~~~~~~P~~v~ 384 (413)
T 1a12_A 369 LGTGQDEDAWSPVEMM 384 (413)
T ss_dssp TCSSSCSCEEEEEECC
T ss_pred CCCCCCCCcccCeEcc
Confidence 9999886665665554
No 5
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=2.2e-59 Score=456.26 Aligned_cols=328 Identities=23% Similarity=0.350 Sum_probs=270.4
Q ss_pred HHhhhhhcCCCceeEEEE--------------Eeecce----E------eeeeceEEecCCCeEEEEecCCcEEEeeCCC
Q 016940 16 RQDLKQKCGGSWKLVLRF--------------LLAGEA----C------CRRENSQAIAGPGHSIAVTSKGVVYSFGSNS 71 (380)
Q Consensus 16 ~~~~~~~~g~~~~~~~~~--------------~~~~~~----~------~~~~i~~i~~G~~~~~~l~~~G~v~~~G~n~ 71 (380)
.+..++++|..|+.++.. |..++. . .-.+|++|+||..|+++|++||+||+||.|.
T Consensus 24 ~~~~~ia~g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~v~~va~G~~h~~~l~~~G~v~~wG~n~ 103 (423)
T 3mvd_K 24 AKRARIAFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFGCND 103 (423)
T ss_dssp -----CCCCCCCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCSSEEEEEECSSEEEEEETTSCEEEEECCS
T ss_pred ceeeEEecCCccceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCCCceEEeeCCCeEEEEeCCCeEEEeECCC
Confidence 677899999999988764 111110 0 1126899999999999999999999999999
Q ss_pred CCCcCCCCCCC--ccceeeccCCCCCcEEEEEeCCCceEEEecCCcEEEeeC--CCCCCCccCCCCceeecCCeeecccC
Q 016940 72 SGQLGHGTTEE--EWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGK--DSFGEAEYGVQGTKLVTSPQLVESLK 147 (380)
Q Consensus 72 ~gqlG~~~~~~--~~~p~~v~~~~~~~I~~V~~g~~~~~~lt~~G~vy~~G~--n~~gqlG~~~~~~~~~~~p~~v~~~~ 147 (380)
+||||.+.... ...|.++.... +|++|+||..|+++|+++|+||+||. |.+||||.+. ......|. ..+.
T Consensus 104 ~GqLG~~~~~~~~~~~P~~v~~~~--~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~--~~~~~~p~--~~~~ 177 (423)
T 3mvd_K 104 EGALGRDTSEDGSESKPDLIDLPG--KALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTI--DGNKRTPI--DLME 177 (423)
T ss_dssp SSTTCSCCCSTTSSSSCEECCCSS--CEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBT--TBCEEEEE--ESST
T ss_pred CcCCCCCCcCCccccCCeEEcCCC--CEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCC--CCCCceee--EecC
Confidence 99999998764 56788877443 89999999999999999999999999 9999999886 33334444 4456
Q ss_pred CccEEEEeeCCCeEEEEecCCcEEEEEeCCCCccCCCCCC-----------CcccccccccccCCCCEEEEEecCCceEE
Q 016940 148 NIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEP-----------NDVEPHPLLGTLENIPVVQIAAGYCYLLA 216 (380)
Q Consensus 148 ~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~-----------~~~~p~~v~~~~~~~~i~~i~~g~~~~~~ 216 (380)
+.+|++|+||.+|+++|+++|+||+||.|.+||||..... ....|.++.. ....+|++|+||.+|+++
T Consensus 178 ~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~-~~~~~v~~i~~g~~~~~~ 256 (423)
T 3mvd_K 178 GTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLII-TRAKPFEAIWATNYCTFM 256 (423)
T ss_dssp TCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECC-TTCCCEEEEEEETTEEEE
T ss_pred CCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEee-cCCccEEEEEECCcEEEE
Confidence 6789999999999999999999999999999999987653 2345666664 556789999999999999
Q ss_pred EE-EeCCCCEEEEEecCCCCccCCCCCCCCC--CCeeeeeeecCCCccEEEEccCceEEEEeCCCCEEEEeCCCCCCccC
Q 016940 217 LA-CQPSGMAVYSVGCGLGGKLGHGSRTDEK--HPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGH 293 (380)
Q Consensus 217 l~-~~~~G~~vy~~G~n~~gqlg~~~~~~~~--~p~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~vy~wG~n~~gqLG~ 293 (380)
+. . +| +||+||.|.++|||.+...... .|..+. ..+|++|+||.+|+++|+++|+||+||.|.+||||.
T Consensus 257 ~~~~--~g-~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~-----~~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~ 328 (423)
T 3mvd_K 257 RESQ--TQ-VIWATGLNNFKQLAHETKGKEFALTPIKTE-----LKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGL 328 (423)
T ss_dssp EETT--TC-CEEEEEECTTCTTSSCCTTCSEEEEEEEEC-----CCSEEEEEECSSEEEEEETTCCEEEEECCGGGTTCS
T ss_pred EECC--CC-eEEEEeCCCCCcCCCCCCCCceeeeeEEcC-----CCCeEEEEcccCeEEEEeCCCcEEEEECCCCCCCCC
Confidence 95 5 88 9999999999999996544333 333322 347999999999999999999999999999999999
Q ss_pred CCCCC-ccccEEecccCCCcEEEEEecCCeEEEEeeCCCEEEEECCCCCCCCCCCCCCCCccchhhh
Q 016940 294 GNEEC-ESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQVCSLLFL 359 (380)
Q Consensus 294 ~~~~~-~~~p~~i~~~~~~~i~~i~~G~~~t~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~~~~~~~ 359 (380)
++... ...|.+++.+.+ +|++|+||.+|+++|+++|+||+||.|++||||.+...+...|..+..
T Consensus 329 g~~~~~~~~p~~v~~l~~-~v~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~ 394 (423)
T 3mvd_K 329 GDVKDVVEKPTIVKKLTE-KIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVS 394 (423)
T ss_dssp SSCCSCEEEEEECTTCCS-CEEEEEEETTEEEEEETTSCEEEEECCTTSCSSSSSSCCEEEEEECCS
T ss_pred CCccccccCceEeccCCC-CEEEEEcCCCeEEEEcCCCCEEEECCCCCCCCCCCCCCCcccCeEEeC
Confidence 98554 578999988877 899999999999999999999999999999999999888777776663
No 6
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-59 Score=460.83 Aligned_cols=305 Identities=25% Similarity=0.353 Sum_probs=257.1
Q ss_pred eeceEEecCCCeEEEEecCCcEEEeeCCCCCCcCCCCCCC-----------------------ccceeeccC--C----C
Q 016940 43 RENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEE-----------------------EWRPRPIRS--L----Q 93 (380)
Q Consensus 43 ~~i~~i~~G~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~-----------------------~~~p~~v~~--~----~ 93 (380)
.+|++|+||..|+++|+++|+||+||.|.+||||.+.... ...|.+++. + .
T Consensus 67 ~~i~~va~G~~Ht~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~ 146 (473)
T 3of7_A 67 AKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAE 146 (473)
T ss_dssp TCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHT
T ss_pred CCEEEEEeCCCeEEEEecCCeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccC
Confidence 3899999999999999999999999999999999987654 457888875 4 3
Q ss_pred CCcEEEEEeCCCceEEEecCCcEEEeeC--CCCCCCccCCCCceeecCCeeecccCCccEEEEeeCCCeEEEEecCCcEE
Q 016940 94 GIRIIQAAAGAGRTMLISDAGQVYAFGK--DSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVY 171 (380)
Q Consensus 94 ~~~I~~V~~g~~~~~~lt~~G~vy~~G~--n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~~~~lt~~G~vy 171 (380)
+.+|++|+||..|+++|+++|+||+||. |.+||||.+.........|..++.+.+.+|++|+||.+|+++|+++|+||
T Consensus 147 ~~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~ 226 (473)
T 3of7_A 147 GHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVF 226 (473)
T ss_dssp TCCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEE
T ss_pred CCcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEE
Confidence 5799999999999999999999999998 68999998765556778899999888889999999999999999999999
Q ss_pred EEEeCCCCccCCCCCCC----cccccccccccCCCCEEEEEecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCC---
Q 016940 172 TFSWGNDARLGHHTEPN----DVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTD--- 244 (380)
Q Consensus 172 ~~G~n~~gqlg~~~~~~----~~~p~~v~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~--- 244 (380)
+||.|.+||||.+.... ...|..+. ..+|++|+||.+|+++|+. +| +||+||.|.+||||.+....
T Consensus 227 ~wG~n~~GqLG~~~~~~~~~~~~~p~~~~----~~~v~~Ia~G~~hs~alt~--~G-~v~~wG~n~~GqlG~~~~~~~~~ 299 (473)
T 3of7_A 227 AWGNGQQNQLGRKVMERFRLKTLDPRPFG----LRHVKYIASGENHCFALTK--DN-KLVSWGLNQFGQCGVSEDVEDGA 299 (473)
T ss_dssp EEECCTTSTTSSCCCGGGTTTTCSCEECS----CCSEEEEEECSSEEEEEET--TS-CEEEEEECTTSTTCCCSCCCTTC
T ss_pred EEeCCCCCCCCCCccccccccccCceecC----CcceEEEecCCCeEEEEec--CC-CEEEeCCCCCCCcCCCCcccCCc
Confidence 99999999999886543 22344432 2569999999999999998 99 99999999999999887542
Q ss_pred -CCCCeeeeeeecCCCccEEEEccCceEEEEeCCCCEEEEeCCCCCCccCCCC--------------CCccccEEecccC
Q 016940 245 -EKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNE--------------ECESVPKVVQALN 309 (380)
Q Consensus 245 -~~~p~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~vy~wG~n~~gqLG~~~~--------------~~~~~p~~i~~~~ 309 (380)
...|..+..+ .+.+|++|+||.+|+++|+++|+||+||.|.+||||.+.. .....|.+++.+.
T Consensus 300 ~~~~P~~v~~~--~~~~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~ 377 (473)
T 3of7_A 300 LVTKPKRLALP--DNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVP 377 (473)
T ss_dssp EEEEEEECCCC--TTCCEEEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSC
T ss_pred eeecccccccc--CCccEEEEEeCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCC
Confidence 2345555543 3457999999999999999999999999999999998652 1234566665433
Q ss_pred CCcEEEEEecCCeEEEEeeCCCEEEEECCCCCCCCCCC-CCCCCccchhh
Q 016940 310 DVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNA-IADGQVCSLLF 358 (380)
Q Consensus 310 ~~~i~~i~~G~~~t~~l~~~g~v~~wG~n~~gqlG~~~-~~~~~~~~~~~ 358 (380)
+|++|+||.+|+++|+++|+||+||.|++||||++. ..+...|..+.
T Consensus 378 --~v~~Ia~G~~hs~al~~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~ 425 (473)
T 3of7_A 378 --KFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIK 425 (473)
T ss_dssp --CEEEEEECSSEEEEEETTSCEEEEECCTTCTTCCCSCCSCEEEEEECC
T ss_pred --ceEEEEeCCCeEEEEeCCCcEEEeeCCCCCCCCCCCCCccccCCeEec
Confidence 799999999999999999999999999999999999 44444555554
No 7
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=3.4e-59 Score=449.86 Aligned_cols=304 Identities=28% Similarity=0.470 Sum_probs=262.2
Q ss_pred EEecCCCeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeCCCceEEEecCCcEEEeeCCCCCC
Q 016940 47 QAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGE 126 (380)
Q Consensus 47 ~i~~G~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g~~~~~~lt~~G~vy~~G~n~~gq 126 (380)
++..-....+++++||+||+||.|.+||||.++......|.+++.+.+.+|++|+||..|+++|+++|+||+||.|.+||
T Consensus 5 ~~~~~~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~Gq 84 (389)
T 3kci_A 5 HHHSSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGR 84 (389)
T ss_dssp ----------------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCGGGT
T ss_pred ccccCcccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECCCCCC
Confidence 44556678899999999999999999999999888888999998887789999999999999999999999999999999
Q ss_pred CccCCCCceeecCCeeecccCCc--cEEEEeeCCCeEEEEecCCcEEEEEeCCCCccCCCCCCCcccccccccccCCCCE
Q 016940 127 AEYGVQGTKLVTSPQLVESLKNI--FVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPV 204 (380)
Q Consensus 127 lG~~~~~~~~~~~p~~v~~~~~~--~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i 204 (380)
||.+. ......|+.++.+.+. ++++|+||.+|+++|+++|+||+||.|.+||||.+.......|.++.. +.+.+|
T Consensus 85 LG~g~--~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~-l~~~~i 161 (389)
T 3kci_A 85 LGIGG--TESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIES-LRGIEV 161 (389)
T ss_dssp TSSSS--SCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGG-GTTSCE
T ss_pred CCCCC--cCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecc-cCCCeE
Confidence 99986 4566778888877765 457899999999999999999999999999999999888888988886 777889
Q ss_pred EEEEecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEccC--ceEEEEeCCCCEEE
Q 016940 205 VQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGA--WHAAVVGQDGRVCT 282 (380)
Q Consensus 205 ~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~--~h~~~lt~~g~vy~ 282 (380)
++|+||.+|+++|++ +| +||+||.|.++|||.+.......|..+..+ ...+|++|+||. +|+++++++|+||+
T Consensus 162 ~~va~G~~hs~alt~--~G-~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~--~~~~v~~ia~G~g~~~t~~l~~~G~v~~ 236 (389)
T 3kci_A 162 VDVAAGGAHSACVTA--AG-DLYTWGKGRYGRLGHSDSEDQLKPKLVEAL--QGHRVVDIACGSGDAQTLCLTDDDTVWS 236 (389)
T ss_dssp EEEEECSSEEEEEET--TS-CEEEEECCGGGTTCSSSCCCEEEEEECGGG--TTSCEEEEEECCSSCEEEEEETTTEEEE
T ss_pred EEEEeCcCeEEEEeC--CC-eEEEeCCCCCCCcCCCCCcccccceEeccc--CCCeEEEEEEcCCCcEEEEEccCCEEEE
Confidence 999999999999998 99 999999999999999988777778777654 455799999995 89999999999999
Q ss_pred EeCCCCCCccCCCCCCccccEEecccCCCcEEEEEecCCeEEEEeeCCCEEEEECCCCCCCCCCCCCCCCccchhh
Q 016940 283 WGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQVCSLLF 358 (380)
Q Consensus 283 wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~t~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~~~~~~ 358 (380)
||.|.+||||.+.......|.+++.+.+.+|++|+||.+|+++|+++|+||+||+|.+||||.+...+...|..+.
T Consensus 237 wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~ 312 (389)
T 3kci_A 237 WGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ 312 (389)
T ss_dssp EECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECG
T ss_pred EeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEec
Confidence 9999999999999888899999999988899999999999999999999999999999999999877665555544
No 8
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=3.3e-57 Score=439.44 Aligned_cols=295 Identities=26% Similarity=0.391 Sum_probs=251.8
Q ss_pred EEecCCCeEEEEecCCcEEEeeCCCCCCcCCCCCCC-ccceeeccCCCCCcEEEEEeCCCceEEEecCCcEEEeeCCCCC
Q 016940 47 QAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEE-EWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFG 125 (380)
Q Consensus 47 ~i~~G~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~-~~~p~~v~~~~~~~I~~V~~g~~~~~~lt~~G~vy~~G~n~~g 125 (380)
+.+.+..|+++++++|+||+||.|.+||||.++... ...|.+++.+ .+|++|+||..|+++|+++|+||+||.|.+|
T Consensus 12 ~~~~~~~h~~~l~~~g~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~~--~~i~~va~G~~hs~~l~~~G~v~~wG~n~~G 89 (413)
T 1a12_A 12 SKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIP--EDVVQAEAGGMHTVCLSKSGQVYSFGCNDEG 89 (413)
T ss_dssp -CCCCCCCTTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCS--SCEEEEEECSSEEEEEETTSCEEEEECCTTS
T ss_pred hhhhccccceeecCCCcEEEEECCCCCcCCCCCCccccccceEccCC--CCeEEEEeCCCeEEEEcCCCCEEEEECCCCC
Confidence 456668899999999999999999999999998654 5678888754 4899999999999999999999999999999
Q ss_pred CCccCCCCceeecCCeeecccCCccEEEEeeCCCeEEEEecCCcEEEEEe--CCCCccCCCCCCCc-ccccccccccCCC
Q 016940 126 EAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSW--GNDARLGHHTEPND-VEPHPLLGTLENI 202 (380)
Q Consensus 126 qlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~--n~~gqlg~~~~~~~-~~p~~v~~~~~~~ 202 (380)
|||.+.........|..+.. . .+|++|+||.+|+++|+++|+||+||. |.+||||....... ..|.++ ....
T Consensus 90 qLG~~~~~~~~~~~P~~v~l-~-~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v---~~~~ 164 (413)
T 1a12_A 90 ALGRDTSVEGSEMVPGKVEL-Q-EKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV---QLDV 164 (413)
T ss_dssp TTCSCCCSTTGGGSCEECCC-C-SCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEE---CCSS
T ss_pred CCCCCCCCCccccCCeEecC-C-CcEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCccccccCCEEe---cCCC
Confidence 99998743445677888843 3 379999999999999999999999998 89999998765433 346666 3456
Q ss_pred CEEEEEecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCC-----------CCCCeeeeeeec---CCCccEEEEccC
Q 016940 203 PVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTD-----------EKHPRLIEQFQL---LNLQPVVVAAGA 268 (380)
Q Consensus 203 ~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~-----------~~~p~~~~~~~~---~~~~i~~i~~G~ 268 (380)
+|++|+||.+|+++|++ +| +||+||.|.+||||.+.... ...|..+..... ...+|++|+||.
T Consensus 165 ~i~~ia~G~~hs~alt~--~G-~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~ 241 (413)
T 1a12_A 165 PVVKVASGNDHLVMLTA--DG-DLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGA 241 (413)
T ss_dssp CEEEEEECSSEEEEEET--TS-CEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEET
T ss_pred CEEEEEecCceEEEEcC--CC-CEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCC
Confidence 79999999999999998 99 99999999999999875321 134544432211 345799999999
Q ss_pred ceEEEEeCCCCEEEEeCCCCCCccCCCCCCccccEEecccCC--CcEEEEEecCCeEEEEeeCCCEEEEECCCCCCCCCC
Q 016940 269 WHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALND--VKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHN 346 (380)
Q Consensus 269 ~h~~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~p~~i~~~~~--~~i~~i~~G~~~t~~l~~~g~v~~wG~n~~gqlG~~ 346 (380)
+|+++|+++|+||+||.|.++|||.+.......|.+++.+.+ .+|++|+||.+|+++|+++|+||+||+|.+||||.+
T Consensus 242 ~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g 321 (413)
T 1a12_A 242 YFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLG 321 (413)
T ss_dssp TEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSC
T ss_pred CEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCC
Confidence 999999999999999999999999999888899999988876 679999999999999999999999999999999999
Q ss_pred CCCCC
Q 016940 347 AIADG 351 (380)
Q Consensus 347 ~~~~~ 351 (380)
...+.
T Consensus 322 ~~~~~ 326 (413)
T 1a12_A 322 EGAEE 326 (413)
T ss_dssp TTCCC
T ss_pred CCCcc
Confidence 54443
No 9
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=2.1e-56 Score=435.27 Aligned_cols=297 Identities=22% Similarity=0.300 Sum_probs=250.5
Q ss_pred eeeeceEEecCCCeEEEEecCCcEEEeeCCCCCCcCCCCC-CCccceeeccCCCCCcEEEEEeCCCceEEEecCCcEEEe
Q 016940 41 CRRENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTT-EEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAF 119 (380)
Q Consensus 41 ~~~~i~~i~~G~~~~~~l~~~G~v~~~G~n~~gqlG~~~~-~~~~~p~~v~~~~~~~I~~V~~g~~~~~~lt~~G~vy~~ 119 (380)
...++++|++|..|+++++++|+||+||.|.+||||.++. .....|.+++.+. +|++|+||..|+++|+++|+||+|
T Consensus 22 ~~~~~~~ia~g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~--~v~~va~G~~h~~~l~~~G~v~~w 99 (423)
T 3mvd_K 22 PKAKRARIAFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIP--DAVDISAGGMHNLVLTKSGDIYSF 99 (423)
T ss_dssp -------CCCCCCCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCS--SEEEEEECSSEEEEEETTSCEEEE
T ss_pred ccceeeEEecCCccceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCC--CceEEeeCCCeEEEEeCCCeEEEe
Confidence 3468889999999999999999999999999999999975 4566788888776 699999999999999999999999
Q ss_pred eCCCCCCCccCCCCceeecCCeeecccCCccEEEEeeCCCeEEEEecCCcEEEEEe--CCCCccCCCCCCCccccccccc
Q 016940 120 GKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSW--GNDARLGHHTEPNDVEPHPLLG 197 (380)
Q Consensus 120 G~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~--n~~gqlg~~~~~~~~~p~~v~~ 197 (380)
|.|.+||||.+.........|..+... .+|++|+||.+|+++|+++|+||+||. |.+||||.........|.++
T Consensus 100 G~n~~GqLG~~~~~~~~~~~P~~v~~~--~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~-- 175 (423)
T 3mvd_K 100 GCNDEGALGRDTSEDGSESKPDLIDLP--GKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDL-- 175 (423)
T ss_dssp ECCSSSTTCSCCCSTTSSSSCEECCCS--SCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEES--
T ss_pred ECCCCcCCCCCCcCCccccCCeEEcCC--CCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEe--
Confidence 999999999987544456788888643 369999999999999999999999998 99999999887666566554
Q ss_pred ccCCCCEEEEEecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCC-----------CCCCCeeeeeeecCCCccEEEEc
Q 016940 198 TLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRT-----------DEKHPRLIEQFQLLNLQPVVVAA 266 (380)
Q Consensus 198 ~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~-----------~~~~p~~~~~~~~~~~~i~~i~~ 266 (380)
+...+|++|+||.+|+++|++ +| +||+||.|.++|||.+... ....|..+... ...+|++|+|
T Consensus 176 -~~~~~i~~va~G~~hs~alt~--~G-~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~--~~~~v~~i~~ 249 (423)
T 3mvd_K 176 -MEGTVCCSIASGADHLVILTT--AG-KVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIIT--RAKPFEAIWA 249 (423)
T ss_dssp -STTCCEEEEEECSSEEEEEET--TS-CEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCT--TCCCEEEEEE
T ss_pred -cCCCcEEEEecCCCeEEEEec--CC-eEEEeeCCcCCccCCCcccccccccccccccccCCeEEeec--CCccEEEEEE
Confidence 456779999999999999998 99 9999999999999997642 34466666543 3447899999
Q ss_pred cCceEEEE-eCCCCEEEEeCCCCCCccCCCCC--CccccEEecccCCCcEEEEEecCCeEEEEeeCCCEEEEECCCCCCC
Q 016940 267 GAWHAAVV-GQDGRVCTWGWGRYGCLGHGNEE--CESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASL 343 (380)
Q Consensus 267 G~~h~~~l-t~~g~vy~wG~n~~gqLG~~~~~--~~~~p~~i~~~~~~~i~~i~~G~~~t~~l~~~g~v~~wG~n~~gql 343 (380)
|.+|++++ +++|+||+||.|.++|||.+... ....|.++. ..+|++|+||.+|+++|+++|+||+||+|++|||
T Consensus 250 g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~---~~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqL 326 (423)
T 3mvd_K 250 TNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE---LKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRL 326 (423)
T ss_dssp ETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC---CCSEEEEEECSSEEEEEETTCCEEEEECCGGGTT
T ss_pred CCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC---CCCeEEEEcccCeEEEEeCCCcEEEEECCCCCCC
Confidence 99999999 69999999999999999996543 334555544 3479999999999999999999999999999999
Q ss_pred CCCCCCCCC
Q 016940 344 GHNAIADGQ 352 (380)
Q Consensus 344 G~~~~~~~~ 352 (380)
|.+...+..
T Consensus 327 G~g~~~~~~ 335 (423)
T 3mvd_K 327 GLGDVKDVV 335 (423)
T ss_dssp CSSSCCSCE
T ss_pred CCCCccccc
Confidence 999876643
No 10
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-56 Score=439.69 Aligned_cols=297 Identities=24% Similarity=0.356 Sum_probs=254.8
Q ss_pred eeceEEecCCCeEEEEecCCcEEEeeCCCCCCcCCCCC---CCccceeeccCC--CCCcEEEEEeCCCceEEEecCCcEE
Q 016940 43 RENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTT---EEEWRPRPIRSL--QGIRIIQAAAGAGRTMLISDAGQVY 117 (380)
Q Consensus 43 ~~i~~i~~G~~~~~~l~~~G~v~~~G~n~~gqlG~~~~---~~~~~p~~v~~~--~~~~I~~V~~g~~~~~~lt~~G~vy 117 (380)
..|....++..|+++++++|+||+||.|.+||||.++. .....|.+++.+ ...+|++|+||..|+++|+++|+||
T Consensus 10 ~~~~~~~~~~~h~~~~~~~g~v~~wG~n~~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G~v~ 89 (473)
T 3of7_A 10 SHIINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVW 89 (473)
T ss_dssp TTCCCCGGGGHHHHCCSSCCEEEEEEECTTSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETTCCEE
T ss_pred hhhhhhcccccccccCCCCccEEEEcCCCCCccCCCCCcccccccCcccccccccCCCCEEEEEeCCCeEEEEecCCeEE
Confidence 45667788889999999999999999999999999984 345678777766 5668999999999999999999999
Q ss_pred EeeCCCCCCCccCCCCce---------------------eecCCeeecc--c----CCccEEEEeeCCCeEEEEecCCcE
Q 016940 118 AFGKDSFGEAEYGVQGTK---------------------LVTSPQLVES--L----KNIFVVQAAIGNFFTAVLSREGRV 170 (380)
Q Consensus 118 ~~G~n~~gqlG~~~~~~~---------------------~~~~p~~v~~--~----~~~~i~~i~~g~~~~~~lt~~G~v 170 (380)
+||.|.+||||.+..... ....|..|+. + ++.+|++|+||.+|+++|+++|+|
T Consensus 90 ~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~v 169 (473)
T 3of7_A 90 SWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEV 169 (473)
T ss_dssp EEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSCE
T ss_pred EeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEeCCCeE
Confidence 999999999998863221 1567888865 4 367899999999999999999999
Q ss_pred EEEEe--CCCCccCCCCC--CCcccccccccccCCCCEEEEEecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCC--
Q 016940 171 YTFSW--GNDARLGHHTE--PNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTD-- 244 (380)
Q Consensus 171 y~~G~--n~~gqlg~~~~--~~~~~p~~v~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~-- 244 (380)
|+||. +.+||||.... .....|.++.. +.+.+|++|+||.+|+++|+. +| +||+||.|.++|||.+....
T Consensus 170 y~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~-l~~~~i~~va~G~~hs~alt~--~G-~v~~wG~n~~GqLG~~~~~~~~ 245 (473)
T 3of7_A 170 YAWGTFRCNEGILGFYQDKIKIQKTPWKVPT-FSKYNIVQLAPGKDHILFLDE--EG-MVFAWGNGQQNQLGRKVMERFR 245 (473)
T ss_dssp EEEECEEETTEEEESBTTTBSCEEEEEECCC-CCSSCEEEEEECSSEEEEEET--TS-CEEEEECCTTSTTSSCCCGGGT
T ss_pred EEeeCCcCCCCccCCCCCCCccccCcEEccc-cCCCCEEEEEecCCeEEEEeC--CC-eEEEEeCCCCCCCCCCcccccc
Confidence 99998 67899998544 34557777775 677789999999999999998 99 99999999999999986543
Q ss_pred --CCCCeeeeeeecCCCccEEEEccCceEEEEeCCCCEEEEeCCCCCCccCCCCC----CccccEEecccCCCcEEEEEe
Q 016940 245 --EKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEE----CESVPKVVQALNDVKAIHVAT 318 (380)
Q Consensus 245 --~~~p~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~vy~wG~n~~gqLG~~~~~----~~~~p~~i~~~~~~~i~~i~~ 318 (380)
...|..+. ..+|++|+||.+|++||+++|+||+||.|.+||||.+... ....|.+++.+.+.+|++|+|
T Consensus 246 ~~~~~p~~~~-----~~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~~ia~ 320 (473)
T 3of7_A 246 LKTLDPRPFG-----LRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAA 320 (473)
T ss_dssp TTTCSCEECS-----CCSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTCCEEEEEE
T ss_pred ccccCceecC-----CcceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeeccccccccCCccEEEEEe
Confidence 34455442 1479999999999999999999999999999999998743 456799998888889999999
Q ss_pred cCCeEEEEeeCCCEEEEECCCCCCCCCCCC
Q 016940 319 GDYTTFVVSEDGDVYSFGCGESASLGHNAI 348 (380)
Q Consensus 319 G~~~t~~l~~~g~v~~wG~n~~gqlG~~~~ 348 (380)
|.+|+++|+++|+||+||+|.+||||.+..
T Consensus 321 G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~ 350 (473)
T 3of7_A 321 GEHHSLILSQDGDLYSCGRLDMFEVGIPKD 350 (473)
T ss_dssp CSSEEEEEETTSCEEEEEECTTCTTCCCGG
T ss_pred CCCeEEEEeCCCeEEEEECCCCCccCCCcc
Confidence 999999999999999999999999999764
No 11
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=4.9e-49 Score=361.99 Aligned_cols=230 Identities=23% Similarity=0.326 Sum_probs=198.1
Q ss_pred eeceEEecCCCeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeCCCceEEEecCCcEEEeeCC
Q 016940 43 RENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKD 122 (380)
Q Consensus 43 ~~i~~i~~G~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g~~~~~~lt~~G~vy~~G~n 122 (380)
.+|++|+||..|+++|+ ||+||+||.|.+||||.+. . ...+|++|+||..|+++|+ +|+||+||.|
T Consensus 24 ~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~--------~----~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n 89 (282)
T 3qhy_B 24 SGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPA--------A----TQSGVDAIAAGNYHSLALK-DGEVIAWGGN 89 (282)
T ss_dssp SSCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCG--------G----GGSCCCEEEECSSEEEEEE-TTEEEEEECC
T ss_pred CCCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCc--------c----CCCCEEEEEeCCCEEEEEE-CCEEEEeeCC
Confidence 37999999999999998 9999999999999999522 1 1237999999999999996 9999999999
Q ss_pred CCCCCccCCCCceeecCCeeecccCCccEEEEeeCCCeEEEEecCCcEEEEEeCCCCccCCCCCCCcccccccccccCCC
Q 016940 123 SFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENI 202 (380)
Q Consensus 123 ~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~ 202 (380)
.+||||.+ ..+ ..+|++|+||.+|+++|+ +|+||+||.|.++|||.. .+ ...
T Consensus 90 ~~Gqlg~P----------~~~----~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~--------~~-----~~~ 141 (282)
T 3qhy_B 90 EDGQTTVP----------AEA----RSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVP--------AE-----AQS 141 (282)
T ss_dssp TTSTTCCC----------GGG----SSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCC--------GG-----GGS
T ss_pred CCCCCCCC----------ccc----CCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCC--------cc-----CCC
Confidence 99999853 222 236999999999999999 999999999999999842 21 123
Q ss_pred CEEEEEecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEccCceEEEEeCCCCEEE
Q 016940 203 PVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCT 282 (380)
Q Consensus 203 ~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~vy~ 282 (380)
+|++|+||.+|+++|+ +| +||+||.|.++||+. |..+ ..+|++|+||.+|+++| ++|+||+
T Consensus 142 ~i~~i~~G~~~~~~l~---~G-~v~~wG~n~~gqlg~--------p~~~------~~~v~~i~~G~~hs~al-~~G~v~~ 202 (282)
T 3qhy_B 142 GVTALDGGVYTALAVK---NG-GVIAWGDNYFGQTTV--------PAEA------QSGVDDVAGGIFHSLAL-KDGKVIA 202 (282)
T ss_dssp SEEEEEECSSEEEEEE---TT-EEEEEECCTTSTTSC--------CGGG------GSSEEEEEECSSEEEEE-ETTEEEE
T ss_pred CeEEEEcccCEEEEEE---CC-EEEEecCCCCCCCCC--------ceec------CCCeEEEEecCCEEEEE-ECCeEEE
Confidence 4999999999999997 79 999999999999983 3222 34799999999999999 8999999
Q ss_pred EeCCCCCCccCCCCCCccccEEecccCCCcEEEEEecCCeEEEEeeCCCEEEEECCCCCCCCCC
Q 016940 283 WGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHN 346 (380)
Q Consensus 283 wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~t~~l~~~g~v~~wG~n~~gqlG~~ 346 (380)
||.|.++|||.+. +.+ .+|++|+||.+|+++|+ +|+||+||+|+++|++..
T Consensus 203 wG~n~~gqlg~p~----------~~~--~~v~~i~~G~~h~~al~-~g~v~~wG~n~~gq~~v~ 253 (282)
T 3qhy_B 203 WGDNRYKQTTVPT----------EAL--SGVSAIASGEWYSLALK-NGKVIAWGSSRTAPSSVQ 253 (282)
T ss_dssp EECCTTSTTCCCG----------GGG--SSCCEEEECSSCEEEEE-TTEEEEESTTCCCCGGGS
T ss_pred EECCCCCCCCCCc----------ccC--CCceEEEcCCCEEEEEE-CCEEEEecCCCCccccCC
Confidence 9999999998532 112 25899999999999999 999999999999999873
No 12
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=7.5e-45 Score=334.12 Aligned_cols=238 Identities=21% Similarity=0.230 Sum_probs=199.1
Q ss_pred HHhhhhhcCCCceeEEEEEeecceE---------------eeeeceEEecCCCeEEEEecCCcEEEeeCCCCCCcCCCCC
Q 016940 16 RQDLKQKCGGSWKLVLRFLLAGEAC---------------CRRENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTT 80 (380)
Q Consensus 16 ~~~~~~~~g~~~~~~~~~~~~~~~~---------------~~~~i~~i~~G~~~~~~l~~~G~v~~~G~n~~gqlG~~~~ 80 (380)
..+++++||..|++++. ++++. ...+|++|+||..|+++|+ ||+||+||.|.+||||.
T Consensus 24 ~~i~~ia~G~~h~~~l~---~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~--- 96 (282)
T 3qhy_B 24 SGVDAIAGGYFHGLALK---GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTV--- 96 (282)
T ss_dssp SSCCEEEECSSEEEEEE---TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCC---
T ss_pred CCCcEEEeCCCeEEEEE---CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCC---
Confidence 57899999999999984 55552 1238999999999999996 99999999999999996
Q ss_pred CCccceeeccCCCCCcEEEEEeCCCceEEEecCCcEEEeeCCCCCCCccCCCCceeecCCeeecccCCccEEEEeeCCCe
Q 016940 81 EEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFF 160 (380)
Q Consensus 81 ~~~~~p~~v~~~~~~~I~~V~~g~~~~~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~ 160 (380)
|.++. .+|++|+||..|+++|+ +|+||+||.|.+||||... ....+|++|+||.+|
T Consensus 97 -----P~~~~----~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~--------------~~~~~i~~i~~G~~~ 152 (282)
T 3qhy_B 97 -----PAEAR----SGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPA--------------EAQSGVTALDGGVYT 152 (282)
T ss_dssp -----CGGGS----SSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCG--------------GGGSSEEEEEECSSE
T ss_pred -----CcccC----CCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCc--------------cCCCCeEEEEcccCE
Confidence 33332 37999999999999999 9999999999999997432 112459999999999
Q ss_pred EEEEecCCcEEEEEeCCCCccCCCCCCCcccccccccccCCCCEEEEEecCCceEEEEEeCCCCEEEEEecCCCCccCCC
Q 016940 161 TAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHG 240 (380)
Q Consensus 161 ~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~ 240 (380)
+++|+ +|+||+||.|.++|++. |.++ ..+|++|+||.+|+++| + +| +||+||.|.++|||.+
T Consensus 153 ~~~l~-~G~v~~wG~n~~gqlg~--------p~~~-----~~~v~~i~~G~~hs~al-~--~G-~v~~wG~n~~gqlg~p 214 (282)
T 3qhy_B 153 ALAVK-NGGVIAWGDNYFGQTTV--------PAEA-----QSGVDDVAGGIFHSLAL-K--DG-KVIAWGDNRYKQTTVP 214 (282)
T ss_dssp EEEEE-TTEEEEEECCTTSTTSC--------CGGG-----GSSEEEEEECSSEEEEE-E--TT-EEEEEECCTTSTTCCC
T ss_pred EEEEE-CCEEEEecCCCCCCCCC--------ceec-----CCCeEEEEecCCEEEEE-E--CC-eEEEEECCCCCCCCCC
Confidence 99999 89999999999999983 3332 34599999999999999 7 99 9999999999999853
Q ss_pred CCCCCCCCeeeeeeecCCCccEEEEccCceEEEEeCCCCEEEEeCCCCCCccCCCCCCccccEEecccCCCcEEEEEecC
Q 016940 241 SRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGD 320 (380)
Q Consensus 241 ~~~~~~~p~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~ 320 (380)
. . ...+|++|+||.+|+++++ +|+||+||.|.++|++.. ..|++|+||.
T Consensus 215 ~--------~------~~~~v~~i~~G~~h~~al~-~g~v~~wG~n~~gq~~v~----------------~~v~~iaaG~ 263 (282)
T 3qhy_B 215 T--------E------ALSGVSAIASGEWYSLALK-NGKVIAWGSSRTAPSSVQ----------------SGVSSIEAGP 263 (282)
T ss_dssp G--------G------GGSSCCEEEECSSCEEEEE-TTEEEEESTTCCCCGGGS----------------SCEEEEEECS
T ss_pred c--------c------cCCCceEEEcCCCEEEEEE-CCEEEEecCCCCccccCC----------------CCcEEEEECc
Confidence 2 1 1236889999999999999 999999999999987631 1589999999
Q ss_pred CeEEEEeeCCCEE
Q 016940 321 YTTFVVSEDGDVY 333 (380)
Q Consensus 321 ~~t~~l~~~g~v~ 333 (380)
.|+++|+++++.+
T Consensus 264 ~h~~al~~~~~~~ 276 (282)
T 3qhy_B 264 NAAYALKGGSGSG 276 (282)
T ss_dssp SCEEEEEC-----
T ss_pred CeEEEEecCCCCC
Confidence 9999999988754
No 13
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.16 E-value=0.17 Score=47.70 Aligned_cols=228 Identities=7% Similarity=0.008 Sum_probs=131.8
Q ss_pred eceEEecCCCeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeCCCceEEEecCCcEEEeeCCC
Q 016940 44 ENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDS 123 (380)
Q Consensus 44 ~i~~i~~G~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g~~~~~~lt~~G~vy~~G~n~ 123 (380)
.|..++......+.-..||.|..|-.... .....+.. ....|..++......+.-..||.|..|-...
T Consensus 135 ~v~~~~~d~~~l~~g~~dg~i~iwd~~~~-----------~~~~~~~~-h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~ 202 (435)
T 1p22_A 135 GVYCLQYDDQKIVSGLRDNTIKIWDKNTL-----------ECKRILTG-HTGSVLCLQYDERVIITGSSDSTVRVWDVNT 202 (435)
T ss_dssp CEEEEECCSSEEEEEESSSCEEEEESSSC-----------CEEEEECC-CSSCEEEEECCSSEEEEEETTSCEEEEESSS
T ss_pred cEEEEEECCCEEEEEeCCCeEEEEeCCCC-----------eEEEEEcC-CCCcEEEEEECCCEEEEEcCCCeEEEEECCC
Confidence 45566666667777788899999854321 11111221 2236888888666666667899999996532
Q ss_pred CCCCccCCCCceeecCCeeecccCCccEEEEeeCCCeEEEEecCCcEEEEEeCCCCccCCCCCCCcccccccccccCCCC
Q 016940 124 FGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIP 203 (380)
Q Consensus 124 ~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~ 203 (380)
. ++ . ..+. .....|..++...+..+.-..+|.|..|-...... ....... ......
T Consensus 203 ~-~~-------~-----~~~~-~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~---------~~~~~~~-~~~~~~ 258 (435)
T 1p22_A 203 G-EM-------L-----NTLI-HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD---------ITLRRVL-VGHRAA 258 (435)
T ss_dssp C-CE-------E-----EEEC-CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSC---------CEEEEEE-CCCSSC
T ss_pred C-cE-------E-----EEEc-CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCC---------ceeeeEe-cCCCCc
Confidence 1 10 0 0111 12334777777777777778899999884332110 0010111 122345
Q ss_pred EEEEEecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEccCceEEEEeCCCCEEEE
Q 016940 204 VVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTW 283 (380)
Q Consensus 204 i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~vy~w 283 (380)
|..++....+.+.-.. || .|..|-... ...+..+......+..++......++-..+|.|+.|
T Consensus 259 v~~~~~~~~~l~s~~~--dg-~i~vwd~~~--------------~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iw 321 (435)
T 1p22_A 259 VNVVDFDDKYIVSASG--DR-TIKVWNTST--------------CEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLW 321 (435)
T ss_dssp EEEEEEETTEEEEEET--TS-EEEEEETTT--------------CCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEE
T ss_pred EEEEEeCCCEEEEEeC--CC-eEEEEECCc--------------CcEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEE
Confidence 7777775554444444 88 999995322 122333333444566676666777777889999999
Q ss_pred eCCCCCCccCCCCCCccccEEecccCCCcEEEEEecCCeEEEEeeCCCEEEEE
Q 016940 284 GWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFG 336 (380)
Q Consensus 284 G~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~t~~l~~~g~v~~wG 336 (380)
-..... ....+.. ....|..++......+.-..||.|..|-
T Consensus 322 d~~~~~-----------~~~~~~~-h~~~v~~~~~~~~~l~sg~~dg~i~vwd 362 (435)
T 1p22_A 322 DIECGA-----------CLRVLEG-HEELVRCIRFDNKRIVSGAYDGKIKVWD 362 (435)
T ss_dssp ETTTCC-----------EEEEECC-CSSCEEEEECCSSEEEEEETTSCEEEEE
T ss_pred ECCCCC-----------EEEEEeC-CcCcEEEEEecCCEEEEEeCCCcEEEEE
Confidence 764311 1112221 2335667777666666667799999995
No 14
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.89 E-value=0.3 Score=46.02 Aligned_cols=240 Identities=7% Similarity=-0.028 Sum_probs=129.5
Q ss_pred eceEEecCCCeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeCCCceEEEecCCcEEEeeCCC
Q 016940 44 ENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDS 123 (380)
Q Consensus 44 ~i~~i~~G~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g~~~~~~lt~~G~vy~~G~n~ 123 (380)
.|..++......+.-..||.|..|-..... ....+.. ....|..++......+.-..||.|..|-...
T Consensus 175 ~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~-----------~~~~~~~-h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~ 242 (435)
T 1p22_A 175 SVLCLQYDERVIITGSSDSTVRVWDVNTGE-----------MLNTLIH-HCEAVLHLRFNNGMMVTCSKDRSIAVWDMAS 242 (435)
T ss_dssp CEEEEECCSSEEEEEETTSCEEEEESSSCC-----------EEEEECC-CCSCEEEEECCTTEEEEEETTSCEEEEECSS
T ss_pred cEEEEEECCCEEEEEcCCCeEEEEECCCCc-----------EEEEEcC-CCCcEEEEEEcCCEEEEeeCCCcEEEEeCCC
Confidence 566666655555666778888888643211 1111111 2336888888777777778899999996532
Q ss_pred CCCCccCCCCceeecCCeeecccCCccEEEEeeCCCeEEEEecCCcEEEEEeCCCCccCCCCCCCcccccccccccCCCC
Q 016940 124 FGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIP 203 (380)
Q Consensus 124 ~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~ 203 (380)
...+ .+.....-....|..++......+.-..+|.|..|-...... ...+. .....
T Consensus 243 ~~~~-----------~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-----------~~~~~--~~~~~ 298 (435)
T 1p22_A 243 PTDI-----------TLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEF-----------VRTLN--GHKRG 298 (435)
T ss_dssp SSCC-----------EEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCE-----------EEEEE--CCSSC
T ss_pred CCCc-----------eeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcE-----------EEEEc--CCCCc
Confidence 2111 000111112234777777666777778899999884322110 11111 12334
Q ss_pred EEEEEecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEccCceEEEEeCCCCEEEE
Q 016940 204 VVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTW 283 (380)
Q Consensus 204 i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~vy~w 283 (380)
|..++......+.-.. || .|..|-... ...+..+......|..++......+.-..+|.|..|
T Consensus 299 v~~~~~~~~~l~~g~~--dg-~i~iwd~~~--------------~~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vw 361 (435)
T 1p22_A 299 IACLQYRDRLVVSGSS--DN-TIRLWDIEC--------------GACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVW 361 (435)
T ss_dssp EEEEEEETTEEEEEET--TS-CEEEEETTT--------------CCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEE
T ss_pred EEEEEeCCCEEEEEeC--CC-eEEEEECCC--------------CCEEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEE
Confidence 6777665554444444 88 999995432 122223333444567777766677777889999999
Q ss_pred eCCCCCCccCCCCCCccccEEecccCCCcEEEEEecCCeEEEEeeCCCEEEEECCC
Q 016940 284 GWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGE 339 (380)
Q Consensus 284 G~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~t~~l~~~g~v~~wG~n~ 339 (380)
-......... .........+.. ....|..++..+...+.-..||.|..|--..
T Consensus 362 d~~~~~~~~~--~~~~~~~~~~~~-h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 362 DLVAALDPRA--PAGTLCLRTLVE-HSGRVFRLQFDEFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp EHHHHTSTTS--CTTTTEEEEECC-CSSCCCCEEECSSCEEECCSSSEEEEEC---
T ss_pred ECCCCCCccc--cccchheeeccC-CCCCeEEEEeCCCEEEEEeCCCEEEEEECCC
Confidence 7533110000 000001111211 2234555666555555556789999997554
No 15
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.60 E-value=0.49 Score=44.54 Aligned_cols=189 Identities=9% Similarity=-0.054 Sum_probs=101.3
Q ss_pred cEEEEEeCCCceEEEecCCcEEEeeCCCCCCCccCCCCceeecCCeeecccCCccEEEEeeCCCeEEEEecCCcEEEEEe
Q 016940 96 RIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSW 175 (380)
Q Consensus 96 ~I~~V~~g~~~~~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~ 175 (380)
.|..++......+.-..||.|+.|-......+ ..+. .....|..++......+.-..+|.|..|-.
T Consensus 201 ~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~-------------~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~ 266 (445)
T 2ovr_B 201 TVRCMHLHEKRVVSGSRDATLRVWDIETGQCL-------------HVLM-GHVAAVRCVQYDGRRVVSGAYDFMVKVWDP 266 (445)
T ss_dssp CEEEEEEETTEEEEEETTSEEEEEESSSCCEE-------------EEEE-CCSSCEEEEEECSSCEEEEETTSCEEEEEG
T ss_pred cEEEEEecCCEEEEEeCCCEEEEEECCCCcEE-------------EEEc-CCcccEEEEEECCCEEEEEcCCCEEEEEEC
Confidence 46666665555566667777777754321000 0011 112335666665556666677888887742
Q ss_pred CCCCccCCCCCCCcccccccccccCCCCEEEEEecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeee
Q 016940 176 GNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQ 255 (380)
Q Consensus 176 n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~ 255 (380)
.... ....+. .....|..++....+.+.-. .|| .|+.|-.... ..+..+.
T Consensus 267 ~~~~-----------~~~~~~--~~~~~v~~~~~~~~~l~~~~--~d~-~i~i~d~~~~--------------~~~~~~~ 316 (445)
T 2ovr_B 267 ETET-----------CLHTLQ--GHTNRVYSLQFDGIHVVSGS--LDT-SIRVWDVETG--------------NCIHTLT 316 (445)
T ss_dssp GGTE-----------EEEEEC--CCSSCEEEEEECSSEEEEEE--TTS-CEEEEETTTC--------------CEEEEEC
T ss_pred CCCc-----------EeEEec--CCCCceEEEEECCCEEEEEe--CCC-eEEEEECCCC--------------CEEEEEc
Confidence 2210 000111 12345777777444443333 388 8999853321 1222222
Q ss_pred cCCCccEEEEccCceEEEEeCCCCEEEEeCCCCCCccCCCCCCccccEEecc--cCCCcEEEEEecCCeEEEEeeCCCEE
Q 016940 256 LLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQA--LNDVKAIHVATGDYTTFVVSEDGDVY 333 (380)
Q Consensus 256 ~~~~~i~~i~~G~~h~~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~p~~i~~--~~~~~i~~i~~G~~~t~~l~~~g~v~ 333 (380)
.....+..++......+.-..+|.|+.|-..... ....+.. .....|..++......+.-..||.|.
T Consensus 317 ~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~ 385 (445)
T 2ovr_B 317 GHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQ-----------CLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVK 385 (445)
T ss_dssp CCCSCEEEEEEETTEEEEEETTSCEEEEETTTCC-----------EEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEE
T ss_pred CCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCc-----------EEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEE
Confidence 2333455666666677777889999999754311 1112221 12335777777666666667799999
Q ss_pred EEECCC
Q 016940 334 SFGCGE 339 (380)
Q Consensus 334 ~wG~n~ 339 (380)
.|--..
T Consensus 386 iwd~~~ 391 (445)
T 2ovr_B 386 LWDLKT 391 (445)
T ss_dssp EEETTT
T ss_pred EEECCC
Confidence 997553
No 16
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.34 E-value=1 Score=45.23 Aligned_cols=72 Identities=21% Similarity=0.270 Sum_probs=39.2
Q ss_pred ceEEEEeCCCCEEEEeCCCCCCccCCCCCCccccEEecccCCCcEEEEE----ecCCeEE-EEeeCCCEEEEECCCCCC
Q 016940 269 WHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVA----TGDYTTF-VVSEDGDVYSFGCGESAS 342 (380)
Q Consensus 269 ~h~~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~----~G~~~t~-~l~~~g~v~~wG~n~~gq 342 (380)
.|++++..+|+||+.|-...+. +.+.......+..... ...+...+. .-.+|++ ++..+|+||+.|.+.++.
T Consensus 458 ~~~~~~l~~g~i~v~GG~~~~~-~~~~~~~~~~v~~ydp-~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~~~ 534 (656)
T 1k3i_A 458 FHTSVVLPDGSTFITGGQRRGI-PFEDSTPVFTPEIYVP-EQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGD 534 (656)
T ss_dssp SCEEEECTTSCEEEECCBSBCC-TTCCCSBCCCCEEEEG-GGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCTT
T ss_pred cCCeEECCCCCEEEECCcccCc-CcCCCCcccceEEEcC-CCCceeecCCCCCccccccHhhcCCCcEEEecCCCCCCC
Confidence 5777887899999999654332 1111111222222221 111222221 1235664 455799999999987653
No 17
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=96.32 E-value=0.011 Score=51.21 Aligned_cols=72 Identities=24% Similarity=0.251 Sum_probs=60.4
Q ss_pred eeceEEecCCCeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeCCCceEEEecCCcEEEeeCC
Q 016940 43 RENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKD 122 (380)
Q Consensus 43 ~~i~~i~~G~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g~~~~~~lt~~G~vy~~G~n 122 (380)
..|.+|+-...|..++-.|++++++|+|++||+-..... + ++.++.+|..+++-++.-+.+-.||..
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~ta------------g-Pfla~~AG~~fTVTVn~~nyv~FWGDS 375 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDHA------------G-PYIQLAAGHNFTVTVNTLNQVMFWGDS 375 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGGG------------C-CEEEEEECSSEEEEEETTCCEEEEECC
T ss_pred CccccccccccceEEEecCceeEEeccCCCCceecCCCc------------c-hHHhHhccCCeEEEEeceeeEEEecCC
Confidence 378899999999999999999999999999998664422 1 689999999999999999999999976
Q ss_pred CCCCC
Q 016940 123 SFGEA 127 (380)
Q Consensus 123 ~~gql 127 (380)
...-|
T Consensus 376 PDNSL 380 (400)
T 4gbf_A 376 PDNSL 380 (400)
T ss_dssp TTSTT
T ss_pred CCcce
Confidence 55443
No 18
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=96.15 E-value=0.65 Score=41.19 Aligned_cols=199 Identities=12% Similarity=0.101 Sum_probs=98.5
Q ss_pred CCCeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeCCCc-eEEEecCCcEEEeeCCCCCCCcc
Q 016940 51 GPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGR-TMLISDAGQVYAFGKDSFGEAEY 129 (380)
Q Consensus 51 G~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g~~~-~~~lt~~G~vy~~G~n~~gqlG~ 129 (380)
+.-..++++.||+++..+......+............... ....|..++..... .++...+|.+..|-........
T Consensus 10 ~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~- 86 (337)
T 1gxr_A 10 KPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLN--HGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKS- 86 (337)
T ss_dssp EECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEEC--CSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCS-
T ss_pred CceeEEEECCCCCEEEeecCCCcEeccccCCccccceecc--CCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCcee-
Confidence 3446678899999998886554433221111111111122 22356666655443 3444457888888654322110
Q ss_pred CCCCceeecCCeeec-ccCCccEEEEeeCCC--eEEEEecCCcEEEEEeCCCCccCCCCCCCcccccccccccCCCCEEE
Q 016940 130 GVQGTKLVTSPQLVE-SLKNIFVVQAAIGNF--FTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQ 206 (380)
Q Consensus 130 ~~~~~~~~~~p~~v~-~~~~~~i~~i~~g~~--~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~ 206 (380)
....+. ......|..++...+ ..++-..+|.|+.|-..... ... ..........|..
T Consensus 87 ---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~----------~~~-~~~~~~~~~~i~~ 146 (337)
T 1gxr_A 87 ---------PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT----------PRI-KAELTSSAPACYA 146 (337)
T ss_dssp ---------CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC------------EE-EEEEECSSSCEEE
T ss_pred ---------eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCC----------cce-eeecccCCCceEE
Confidence 001111 012234666655433 34444678888887432210 001 1111123345777
Q ss_pred EEecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEc--cCceEEEEeCCCCEEEEe
Q 016940 207 IAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAA--GAWHAAVVGQDGRVCTWG 284 (380)
Q Consensus 207 i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~--G~~h~~~lt~~g~vy~wG 284 (380)
++.......+++...+| .|+.|-... ...+..+......+..++. .....+..+.+|.|+.|-
T Consensus 147 ~~~~~~~~~l~~~~~dg-~v~~~d~~~--------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d 211 (337)
T 1gxr_A 147 LAISPDSKVCFSCCSDG-NIAVWDLHN--------------QTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD 211 (337)
T ss_dssp EEECTTSSEEEEEETTS-CEEEEETTT--------------TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EEECCCCCEEEEEeCCC-cEEEEeCCC--------------CceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEE
Confidence 77765554555544578 999995322 1222222223334555544 334555566788999996
Q ss_pred CCC
Q 016940 285 WGR 287 (380)
Q Consensus 285 ~n~ 287 (380)
...
T Consensus 212 ~~~ 214 (337)
T 1gxr_A 212 LRE 214 (337)
T ss_dssp TTT
T ss_pred CCC
Confidence 543
No 19
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.01 E-value=1 Score=42.26 Aligned_cols=224 Identities=8% Similarity=-0.027 Sum_probs=126.2
Q ss_pred EecCCCeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeCCCceEEEecCCcEEEeeCCCCCCC
Q 016940 48 AIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEA 127 (380)
Q Consensus 48 i~~G~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g~~~~~~lt~~G~vy~~G~n~~gql 127 (380)
++......+.-..||.|..|-..... ....+.. ....|..++......+.-..||.|+.|-.... ++
T Consensus 125 ~~~~g~~l~sg~~dg~i~vwd~~~~~-----------~~~~~~~-h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~ 191 (445)
T 2ovr_B 125 LQFCGNRIVSGSDDNTLKVWSAVTGK-----------CLRTLVG-HTGGVWSSQMRDNIIISGSTDRTLKVWNAETG-EC 191 (445)
T ss_dssp EEEETTEEEEEETTSCEEEEETTTCC-----------EEEECCC-CSSCEEEEEEETTEEEEEETTSCEEEEETTTT-EE
T ss_pred EEEcCCEEEEEECCCcEEEEECCCCc-----------EEEEEcC-CCCCEEEEEecCCEEEEEeCCCeEEEEECCcC-cE
Confidence 33344556666788888888643211 1111221 12367777776666677778999999965321 10
Q ss_pred ccCCCCceeecCCeeecccCCccEEEEeeCCCeEEEEecCCcEEEEEeCCCCccCCCCCCCcccccccccccCCCCEEEE
Q 016940 128 EYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQI 207 (380)
Q Consensus 128 G~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i 207 (380)
. ..+. .....|..++......+.-..+|.|..|-...... ...+. .....|..+
T Consensus 192 -------~-----~~~~-~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-----------~~~~~--~~~~~v~~~ 245 (445)
T 2ovr_B 192 -------I-----HTLY-GHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQC-----------LHVLM--GHVAAVRCV 245 (445)
T ss_dssp -------E-----EEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCE-----------EEEEE--CCSSCEEEE
T ss_pred -------E-----EEEC-CCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcE-----------EEEEc--CCcccEEEE
Confidence 0 1111 12234677777667777778899999884332110 01111 223447777
Q ss_pred EecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEccCceEEEEeCCCCEEEEeCCC
Q 016940 208 AAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGR 287 (380)
Q Consensus 208 ~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~vy~wG~n~ 287 (380)
+......+.-.. || .|+.|-... ...+..+......+..++....+.+.-..+|.++.|-...
T Consensus 246 ~~~~~~l~~~~~--dg-~i~iwd~~~--------------~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~ 308 (445)
T 2ovr_B 246 QYDGRRVVSGAY--DF-MVKVWDPET--------------ETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVET 308 (445)
T ss_dssp EECSSCEEEEET--TS-CEEEEEGGG--------------TEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTT
T ss_pred EECCCEEEEEcC--CC-EEEEEECCC--------------CcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCC
Confidence 775554444444 88 999995322 1223333334446667777667777788899999997644
Q ss_pred CCCccCCCCCCccccEEecccCCCcEEEEEecCCeEEEEeeCCCEEEEECCC
Q 016940 288 YGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGE 339 (380)
Q Consensus 288 ~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~t~~l~~~g~v~~wG~n~ 339 (380)
... ...+.. ....+..+...+...+.-..||.|..|-...
T Consensus 309 ~~~-----------~~~~~~-~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~ 348 (445)
T 2ovr_B 309 GNC-----------IHTLTG-HQSLTSGMELKDNILVSGNADSTVKIWDIKT 348 (445)
T ss_dssp CCE-----------EEEECC-CCSCEEEEEEETTEEEEEETTSCEEEEETTT
T ss_pred CCE-----------EEEEcC-CcccEEEEEEeCCEEEEEeCCCeEEEEECCC
Confidence 111 111111 1224555665566666666789999996543
No 20
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=95.58 E-value=1.2 Score=39.86 Aligned_cols=249 Identities=9% Similarity=-0.017 Sum_probs=112.6
Q ss_pred eEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeCC---CceEEEecCCcEEEeeCCCCCCCccC
Q 016940 54 HSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGA---GRTMLISDAGQVYAFGKDSFGEAEYG 130 (380)
Q Consensus 54 ~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g~---~~~~~lt~~G~vy~~G~n~~gqlG~~ 130 (380)
..+.-..||.|..|-.... .....+.. ....|..++... ...+.-..||.|+.|-......
T Consensus 87 ~l~~~~~dg~i~v~d~~~~-----------~~~~~~~~-~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---- 150 (366)
T 3k26_A 87 LLAVAGSRGIIRIINPITM-----------QCIKHYVG-HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL---- 150 (366)
T ss_dssp EEEEEETTCEEEEECTTTC-----------CEEEEEES-CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE----
T ss_pred EEEEecCCCEEEEEEchhc-----------eEeeeecC-CCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE----
Confidence 3444567788888853321 11111221 233688887754 3344456789999996532110
Q ss_pred CCCceeecCCeeec--ccCCccEEEEeeCC--CeEEEEecCCcEEEEEeCCCCccC-------CCCC--CC------ccc
Q 016940 131 VQGTKLVTSPQLVE--SLKNIFVVQAAIGN--FFTAVLSREGRVYTFSWGNDARLG-------HHTE--PN------DVE 191 (380)
Q Consensus 131 ~~~~~~~~~p~~v~--~~~~~~i~~i~~g~--~~~~~lt~~G~vy~~G~n~~gqlg-------~~~~--~~------~~~ 191 (380)
. ..+. ......|..++... ...+....+|.|+.|-......+. .... .. ...
T Consensus 151 ------~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (366)
T 3k26_A 151 ------V---AIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHF 221 (366)
T ss_dssp ------E---EEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECC
T ss_pred ------E---EEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeecc
Confidence 0 0010 11233466676543 345555678999988544311100 0000 00 000
Q ss_pred ccccccccCCCCEEEEEecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEE--Ecc--
Q 016940 192 PHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVV--AAG-- 267 (380)
Q Consensus 192 p~~v~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i--~~G-- 267 (380)
|...........|..++.... .+++...+| .|..|-.....+.-............+..+......|..+ +..
T Consensus 222 ~~~~~~~~~~~~v~~~~~~~~--~l~~~~~d~-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 298 (366)
T 3k26_A 222 PDFSTRDIHRNYVDCVRWLGD--LILSKSCEN-AIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFW 298 (366)
T ss_dssp CSEEECSSCSSCCCEEEEETT--EEEEECSSS-EEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTT
T ss_pred CccccccCCcceEEEEEEcCC--EEEEEecCC-EEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCC
Confidence 000000012334555555544 333333488 9999975443221111111111122233332222233333 223
Q ss_pred CceEEEEeCCCCEEEEeCCCCCCccCCCCCCccccEEecccC-CCcEEEEEecC--CeEEEEeeCCCEEEEEC
Q 016940 268 AWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALN-DVKAIHVATGD--YTTFVVSEDGDVYSFGC 337 (380)
Q Consensus 268 ~~h~~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~p~~i~~~~-~~~i~~i~~G~--~~t~~l~~~g~v~~wG~ 337 (380)
....++-..+|.|+.|-......+ ......+.... ...|..++... ...+.-..||.|+.|--
T Consensus 299 ~~~l~~~~~dg~i~vwd~~~~~~~-------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 299 QKMLALGNQVGKLYVWDLEVEDPH-------KAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp SSEEEEECTTSCEEEEECCSSSGG-------GCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred CcEEEEEecCCcEEEEECCCCCCc-------cccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 445566678899999976442110 01111222211 23566665543 33444456888988853
No 21
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=95.39 E-value=1.7 Score=40.23 Aligned_cols=147 Identities=12% Similarity=-0.052 Sum_probs=83.8
Q ss_pred EEecCCCeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeCCC--ceEEEecCCcEEEeeCCCC
Q 016940 47 QAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAG--RTMLISDAGQVYAFGKDSF 124 (380)
Q Consensus 47 ~i~~G~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g~~--~~~~lt~~G~vy~~G~n~~ 124 (380)
.++-.....++...||.|+.|-..... ....+.......|..|+.... +.++-..+|.|..|-....
T Consensus 98 ~~~~s~~~l~~~~~d~~v~lw~~~~~~-----------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 166 (401)
T 4aez_A 98 LLDWSNLNVVAVALERNVYVWNADSGS-----------VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ 166 (401)
T ss_dssp CEEECTTSEEEEEETTEEEEEETTTCC-----------EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred EEeecCCCEEEEECCCeEEEeeCCCCc-----------EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC
Confidence 355556778888899999999754211 111222213346777776544 3444457888998865321
Q ss_pred CCCccCCCCceeecCCeeecccCCccEEEEeeCCCeEEEEecCCcEEEEEeCCCCccCCCCCCCcccccccccccCCCCE
Q 016940 125 GEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPV 204 (380)
Q Consensus 125 gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i 204 (380)
..+ ..+. .....|..++......+.-..+|.|+.|-..... .....+. .....|
T Consensus 167 ~~~-------------~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~----------~~~~~~~--~~~~~v 220 (401)
T 4aez_A 167 TKL-------------RTMA-GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIAN----------HQIGTLQ--GHSSEV 220 (401)
T ss_dssp CEE-------------EEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSS----------CEEEEEE--CCSSCE
T ss_pred eEE-------------EEec-CCCCceEEEEECCCEEEEEcCCCCEEEEecccCc----------ceeeEEc--CCCCCe
Confidence 110 0111 1234477777766666777889999988433211 0011111 223458
Q ss_pred EEEEecCCceEEEEEeCCCCEEEEEec
Q 016940 205 VQIAAGYCYLLALACQPSGMAVYSVGC 231 (380)
Q Consensus 205 ~~i~~g~~~~~~l~~~~~G~~vy~~G~ 231 (380)
..++.......+++...|| .|+.|-.
T Consensus 221 ~~~~~~~~~~~l~s~~~d~-~v~iwd~ 246 (401)
T 4aez_A 221 CGLAWRSDGLQLASGGNDN-VVQIWDA 246 (401)
T ss_dssp EEEEECTTSSEEEEEETTS-CEEEEET
T ss_pred eEEEEcCCCCEEEEEeCCC-eEEEccC
Confidence 8887776655556555688 9999954
No 22
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.22 E-value=3 Score=42.21 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=12.2
Q ss_pred CeEEEEeeCCCEEEEECC
Q 016940 321 YTTFVVSEDGDVYSFGCG 338 (380)
Q Consensus 321 ~~t~~l~~~g~v~~wG~n 338 (380)
.|+++...+|+||+.|-.
T Consensus 657 gh~~~~~~~g~i~v~GGg 674 (695)
T 2zwa_A 657 GFSLVSTSMGTIHIIGGG 674 (695)
T ss_dssp SCEEECC---CEEEECCE
T ss_pred eeeEEEeCCCEEEEEeCC
Confidence 488888888899999853
No 23
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=95.18 E-value=0.039 Score=47.80 Aligned_cols=71 Identities=23% Similarity=0.195 Sum_probs=58.7
Q ss_pred ccEEEEccCceEEEEeCCCCEEEEeCCCCCCccCCCCCCccccEEecccCCCcEEEEEecCCeEEEEeeCCCEEEEECCC
Q 016940 260 QPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGE 339 (380)
Q Consensus 260 ~i~~i~~G~~h~~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~t~~l~~~g~v~~wG~n~ 339 (380)
.+..|+.-+.|++++--++++|.||+|+.||+-.... .. +..++.+|..+++-+..-.++-.||+..
T Consensus 310 ~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~t------------ag-Pfla~~AG~~fTVTVn~~nyv~FWGDSP 376 (400)
T 4gbf_A 310 PIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDH------------AG-PYIQLAAGHNFTVTVNTLNQVMFWGDSP 376 (400)
T ss_dssp CCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGG------------GC-CEEEEEECSSEEEEEETTCCEEEEECCT
T ss_pred ccccccccccceEEEecCceeEEeccCCCCceecCCC------------cc-hHHhHhccCCeEEEEeceeeEEEecCCC
Confidence 5668888899999999999999999999999754332 12 6778999999999999999999999776
Q ss_pred CCCC
Q 016940 340 SASL 343 (380)
Q Consensus 340 ~gql 343 (380)
...|
T Consensus 377 DNSL 380 (400)
T 4gbf_A 377 DNSL 380 (400)
T ss_dssp TSTT
T ss_pred Ccce
Confidence 5554
No 24
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=94.58 E-value=2.4 Score=37.87 Aligned_cols=210 Identities=6% Similarity=-0.081 Sum_probs=104.3
Q ss_pred eceEEecC------CCeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeecc-CCCCCcEEEEEeCCC------ceEEE
Q 016940 44 ENSQAIAG------PGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIR-SLQGIRIIQAAAGAG------RTMLI 110 (380)
Q Consensus 44 ~i~~i~~G------~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~-~~~~~~I~~V~~g~~------~~~~l 110 (380)
+|..|+.. ....++-..+|.|..|-......+ ....... ......|..++.... ..+.-
T Consensus 20 ~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 20 PLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI--------RLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp CEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE--------EEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred ceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE--------EeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 55555554 455677777888998864422111 1111111 112235777665444 34455
Q ss_pred ecCCcEEEeeCCCCCCCccCCCCceeecCCeeecccCCccEEEEeeCC---CeEEEEecCCcEEEEEeCCCCccCCCCCC
Q 016940 111 SDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGN---FFTAVLSREGRVYTFSWGNDARLGHHTEP 187 (380)
Q Consensus 111 t~~G~vy~~G~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~---~~~~~lt~~G~vy~~G~n~~gqlg~~~~~ 187 (380)
..+|.|..|-.... ++ ...+. .....|..++... ...+.-..+|.|+.|-.....
T Consensus 92 ~~dg~i~v~d~~~~-~~------------~~~~~-~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-------- 149 (366)
T 3k26_A 92 GSRGIIRIINPITM-QC------------IKHYV-GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT-------- 149 (366)
T ss_dssp ETTCEEEEECTTTC-CE------------EEEEE-SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE--------
T ss_pred cCCCEEEEEEchhc-eE------------eeeec-CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe--------
Confidence 67888999964321 10 01111 1223477776643 345555678999988433211
Q ss_pred Ccccccccc-cccCCCCEEEEEecCCceEEEEEeCCCCEEEEEecCCCCccC-------CCC--CCCCCCCee-----ee
Q 016940 188 NDVEPHPLL-GTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLG-------HGS--RTDEKHPRL-----IE 252 (380)
Q Consensus 188 ~~~~p~~v~-~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg-------~~~--~~~~~~p~~-----~~ 252 (380)
....+. .......|..++...+...+++...|| .|+.|-......+. ... ......+.. ..
T Consensus 150 ---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (366)
T 3k26_A 150 ---LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDH-SLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFS 225 (366)
T ss_dssp ---EEEEECSTTSCSSCEEEEEECTTSSEEEEEETTS-CEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEE
T ss_pred ---EEEEecccccccCceeEEEECCCCCEEEEecCCC-CEEEEECCCCccccccceeEEecCCCCcccccceeeccCccc
Confidence 001110 012344588888776655556555688 99999643221110 000 000000000 00
Q ss_pred eeecCCCccEEEEccCceEEEEeCCCCEEEEeCCC
Q 016940 253 QFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGR 287 (380)
Q Consensus 253 ~~~~~~~~i~~i~~G~~h~~~lt~~g~vy~wG~n~ 287 (380)
........|..++-.....+.-..+|.|+.|-...
T Consensus 226 ~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~ 260 (366)
T 3k26_A 226 TRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGK 260 (366)
T ss_dssp ECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESS
T ss_pred cccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCC
Confidence 11112234445544456777777899999998654
No 25
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.24 E-value=2.5 Score=42.80 Aligned_cols=18 Identities=22% Similarity=0.174 Sum_probs=12.2
Q ss_pred ceEEEEeCCCCEEEEeCC
Q 016940 269 WHAAVVGQDGRVCTWGWG 286 (380)
Q Consensus 269 ~h~~~lt~~g~vy~wG~n 286 (380)
.|+++...+|+||++|-+
T Consensus 657 gh~~~~~~~g~i~v~GGg 674 (695)
T 2zwa_A 657 GFSLVSTSMGTIHIIGGG 674 (695)
T ss_dssp SCEEECC---CEEEECCE
T ss_pred eeeEEEeCCCEEEEEeCC
Confidence 488888888899999964
No 26
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=93.96 E-value=2.9 Score=36.40 Aligned_cols=187 Identities=14% Similarity=0.057 Sum_probs=100.2
Q ss_pred CcEEEEEeCCCceEEEecCCcEEEeeCCCCCCCccCCCCceeecCCeeecccCCccEEEEee---CCCeEEEEecCCcEE
Q 016940 95 IRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAI---GNFFTAVLSREGRVY 171 (380)
Q Consensus 95 ~~I~~V~~g~~~~~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~---g~~~~~~lt~~G~vy 171 (380)
..|..++......+.-..+|.++.|-. ++ . ..........+..+.. .....+.-..+|.|+
T Consensus 105 ~~i~~~~~~~~~l~~~~~d~~i~~~d~---~~-------~------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 168 (313)
T 3odt_A 105 GNVCSLSFQDGVVISGSWDKTAKVWKE---GS-------L------VYNLQAHNASVWDAKVVSFSENKFLTASADKTIK 168 (313)
T ss_dssp SCEEEEEEETTEEEEEETTSEEEEEET---TE-------E------EEEEECCSSCEEEEEEEETTTTEEEEEETTSCEE
T ss_pred cCEEEEEecCCEEEEEeCCCCEEEEcC---Cc-------E------EEecccCCCceeEEEEccCCCCEEEEEECCCCEE
Confidence 368888876666777788999999841 11 0 0000111223444443 455666677889999
Q ss_pred EEEeCCCCccCCCCCCCcccccccccccCCCCEEEEEecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeee
Q 016940 172 TFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLI 251 (380)
Q Consensus 172 ~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~ 251 (380)
.|-. ..+...........+..++......+ ++...+| .|+.|-... ...+
T Consensus 169 i~d~--------------~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~dg-~i~i~d~~~--------------~~~~ 218 (313)
T 3odt_A 169 LWQN--------------DKVIKTFSGIHNDVVRHLAVVDDGHF-ISCSNDG-LIKLVDMHT--------------GDVL 218 (313)
T ss_dssp EEET--------------TEEEEEECSSCSSCEEEEEEEETTEE-EEEETTS-EEEEEETTT--------------CCEE
T ss_pred EEec--------------CceEEEEeccCcccEEEEEEcCCCeE-EEccCCC-eEEEEECCc--------------hhhh
Confidence 8830 01111111123445777666555443 3334578 999995432 1222
Q ss_pred eeeecCCCccEEEEccCc-eEEEEeCCCCEEEEeCCCCCCccCCCCCCccccEEecccCCCcEEEEEecCC-eEEEEeeC
Q 016940 252 EQFQLLNLQPVVVAAGAW-HAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDY-TTFVVSED 329 (380)
Q Consensus 252 ~~~~~~~~~i~~i~~G~~-h~~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~~-~t~~l~~~ 329 (380)
..+......|..++...+ ..++...+|.|+.|-.... .....+. .....|..++.... ..++-..|
T Consensus 219 ~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~-----------~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~d 286 (313)
T 3odt_A 219 RTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENG-----------SLKQVIT-LPAISIWSVDCMSNGDIIVGSSD 286 (313)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTC-----------CEEEEEE-CSSSCEEEEEECTTSCEEEEETT
T ss_pred hhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCC-----------ceeEEEe-ccCceEEEEEEccCCCEEEEeCC
Confidence 233333445666654433 5666678889999964331 1111222 22335666655433 35555678
Q ss_pred CCEEEEECCC
Q 016940 330 GDVYSFGCGE 339 (380)
Q Consensus 330 g~v~~wG~n~ 339 (380)
|.|+.|=...
T Consensus 287 g~i~iw~~~~ 296 (313)
T 3odt_A 287 NLVRIFSQEK 296 (313)
T ss_dssp SCEEEEESCG
T ss_pred CcEEEEeCCC
Confidence 9999997553
No 27
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=93.94 E-value=3.6 Score=37.42 Aligned_cols=72 Identities=13% Similarity=0.114 Sum_probs=40.3
Q ss_pred CCCEEEEEecCCceEEEEEeCC---CCEEEEEecCCCCccCCCCCCCCCCCeeeeeeec-------------CCCccEEE
Q 016940 201 NIPVVQIAAGYCYLLALACQPS---GMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQL-------------LNLQPVVV 264 (380)
Q Consensus 201 ~~~i~~i~~g~~~~~~l~~~~~---G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~-------------~~~~i~~i 264 (380)
...|..++.......+++...+ | .|+.|-.... ..+..+.. ....|..+
T Consensus 233 ~~~i~~i~~~~~~~~l~~~~~d~~~g-~i~i~d~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 297 (397)
T 1sq9_A 233 SNSIRSVKFSPQGSLLAIAHDSNSFG-CITLYETEFG--------------ERIGSLSVPTHSSQASLGEFAHSSWVMSL 297 (397)
T ss_dssp CCCEEEEEECSSTTEEEEEEEETTEE-EEEEEETTTC--------------CEEEEECBC--------CCBSBSSCEEEE
T ss_pred CCccceEEECCCCCEEEEEecCCCCc-eEEEEECCCC--------------cccceeccCcccccccccccccCCcEEEE
Confidence 4568888776554444444447 8 9999964321 11111211 23345555
Q ss_pred Ecc--CceEEEEeCCCCEEEEeCCC
Q 016940 265 AAG--AWHAAVVGQDGRVCTWGWGR 287 (380)
Q Consensus 265 ~~G--~~h~~~lt~~g~vy~wG~n~ 287 (380)
+.. ....+.-..+|.|+.|-...
T Consensus 298 ~~~~~~~~l~~~~~dg~i~iwd~~~ 322 (397)
T 1sq9_A 298 SFNDSGETLCSAGWDGKLRFWDVKT 322 (397)
T ss_dssp EECSSSSEEEEEETTSEEEEEETTT
T ss_pred EECCCCCEEEEEeCCCeEEEEEcCC
Confidence 443 34555566788899997543
No 28
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=92.96 E-value=4.4 Score=35.53 Aligned_cols=148 Identities=9% Similarity=-0.050 Sum_probs=76.1
Q ss_pred cEEEEEeCCC--ceEEEecCCcEEEeeCCCCCCCccCCCCceeecCCeeecccCCccEEEEeeCC--CeEEEEecCCcEE
Q 016940 96 RIIQAAAGAG--RTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGN--FFTAVLSREGRVY 171 (380)
Q Consensus 96 ~I~~V~~g~~--~~~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~--~~~~~lt~~G~vy 171 (380)
.|..++.... +.+.-+.+|.|+.|-...... ...+.. ....|..++... ...+....+|.|+
T Consensus 143 ~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~-------------~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~ 208 (337)
T 1gxr_A 143 ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL-------------VRQFQG-HTDGASCIDISNDGTKLWTGGLDNTVR 208 (337)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-------------EEEECC-CSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCce-------------eeeeec-ccCceEEEEECCCCCEEEEEecCCcEE
Confidence 5777765543 344456788888886532100 001111 123466666543 3455556788888
Q ss_pred EEEeCCCCccCCCCCCCcccccccccccCCCCEEEEEecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeee
Q 016940 172 TFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLI 251 (380)
Q Consensus 172 ~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~ 251 (380)
.|-.... ..+.......++..++...+...++....+| .|+.|-..... ..
T Consensus 209 ~~d~~~~--------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-~i~~~~~~~~~--------------~~ 259 (337)
T 1gxr_A 209 SWDLREG--------------RQLQQHDFTSQIFSLGYCPTGEWLAVGMESS-NVEVLHVNKPD--------------KY 259 (337)
T ss_dssp EEETTTT--------------EEEEEEECSSCEEEEEECTTSSEEEEEETTS-CEEEEETTSSC--------------EE
T ss_pred EEECCCC--------------ceEeeecCCCceEEEEECCCCCEEEEEcCCC-cEEEEECCCCC--------------eE
Confidence 8743221 0111101233477777665554444444577 88888543211 11
Q ss_pred eeeecCCCccEEEEcc--CceEEEEeCCCCEEEEeCCC
Q 016940 252 EQFQLLNLQPVVVAAG--AWHAAVVGQDGRVCTWGWGR 287 (380)
Q Consensus 252 ~~~~~~~~~i~~i~~G--~~h~~~lt~~g~vy~wG~n~ 287 (380)
.+......+..++.. ....+....+|.|+.|-...
T Consensus 260 -~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~ 296 (337)
T 1gxr_A 260 -QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY 296 (337)
T ss_dssp -EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred -EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCC
Confidence 112223345555443 34555667788899997543
No 29
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=92.50 E-value=6.9 Score=36.56 Aligned_cols=244 Identities=7% Similarity=-0.062 Sum_probs=125.8
Q ss_pred eceEEecCCC-eEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeC----CCceEEEecCCcEEE
Q 016940 44 ENSQAIAGPG-HSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAG----AGRTMLISDAGQVYA 118 (380)
Q Consensus 44 ~i~~i~~G~~-~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g----~~~~~~lt~~G~vy~ 118 (380)
.|..++...+ ..+.-..||.|..|-.... .....+.. ....|..++.. ....+.-..||.+..
T Consensus 164 ~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~-----------~~~~~~~~-h~~~v~~l~~~~~~~~~~l~s~s~d~~i~v 231 (464)
T 3v7d_B 164 GVWALKYAHGGILVSGSTDRTVRVWDIKKG-----------CCTHVFEG-HNSTVRCLDIVEYKNIKYIVTGSRDNTLHV 231 (464)
T ss_dssp CEEEEEECSTTEEEEEETTSCEEEEETTTT-----------EEEEEECC-CSSCEEEEEEEESSSCEEEEEEETTSCEEE
T ss_pred CEEEEEEcCCCEEEEEeCCCCEEEEECCCC-----------cEEEEECC-CCCccEEEEEecCCCCCEEEEEcCCCcEEE
Confidence 4555554433 4444567788888854321 11111221 12356666543 234555577899999
Q ss_pred eeCCCCCCCccCCC---CceeecC----Ceee--cccCCccEEEEeeCCCeEEEEecCCcEEEEEeCCCCccCCCCCCCc
Q 016940 119 FGKDSFGEAEYGVQ---GTKLVTS----PQLV--ESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPND 189 (380)
Q Consensus 119 ~G~n~~gqlG~~~~---~~~~~~~----p~~v--~~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~ 189 (380)
|-............ ....... +..+ ..-....+..++......+.-..+|.|..|-....
T Consensus 232 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~----------- 300 (464)
T 3v7d_B 232 WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQM----------- 300 (464)
T ss_dssp EECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTT-----------
T ss_pred eeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCC-----------
Confidence 97654332211100 0000000 1011 11112346667666667777788999998843221
Q ss_pred ccccccccccCCCCEEEEEecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEccCc
Q 016940 190 VEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAW 269 (380)
Q Consensus 190 ~~p~~v~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~ 269 (380)
.+.... ......|..++.......+++...|| .|+.|-... ...+..+......+..++....
T Consensus 301 -~~~~~~-~~~~~~v~~~~~~~~~~~l~sg~~dg-~i~vwd~~~--------------~~~~~~~~~h~~~v~~~~~~~~ 363 (464)
T 3v7d_B 301 -KCLYIL-SGHTDRIYSTIYDHERKRCISASMDT-TIRIWDLEN--------------GELMYTLQGHTALVGLLRLSDK 363 (464)
T ss_dssp -EEEEEE-CCCSSCEEEEEEETTTTEEEEEETTS-CEEEEETTT--------------TEEEEEECCCSSCEEEEEECSS
T ss_pred -cEEEEe-cCCCCCEEEEEEcCCCCEEEEEeCCC-cEEEEECCC--------------CcEEEEEeCCCCcEEEEEEcCC
Confidence 011111 12234577777776655555555688 999995321 2233334444456677777777
Q ss_pred eEEEEeCCCCEEEEeCCCCCCccCCCCCCccccEEecccCCCcEEEEEecCCeEEEEeeCCCEEEEECCC
Q 016940 270 HAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGE 339 (380)
Q Consensus 270 h~~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~t~~l~~~g~v~~wG~n~ 339 (380)
+.+.-..+|.|..|-.....+ ...........+..+...+. .++...+|.|..|=-..
T Consensus 364 ~l~s~s~dg~v~vwd~~~~~~-----------~~~~~~~~~~~~~~~~~~~~-~l~~~~dg~i~iwd~~~ 421 (464)
T 3v7d_B 364 FLVSAAADGSIRGWDANDYSR-----------KFSYHHTNLSAITTFYVSDN-ILVSGSENQFNIYNLRS 421 (464)
T ss_dssp EEEEEETTSEEEEEETTTCCE-----------EEEEECTTCCCEEEEEECSS-EEEEEETTEEEEEETTT
T ss_pred EEEEEeCCCcEEEEECCCCce-----------eeeecCCCCccEEEEEeCCC-EEEEecCCeEEEEECCC
Confidence 788888999999997654211 11111112223444444443 44445689999996554
No 30
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=91.80 E-value=6.6 Score=34.83 Aligned_cols=194 Identities=10% Similarity=-0.029 Sum_probs=102.0
Q ss_pred CCcEEEEEeCCC-----ceEEEecCCcEEEeeCCCCCCCccCCCCceeecCCeeecccCCccEEEEeeCCC--eEEEEec
Q 016940 94 GIRIIQAAAGAG-----RTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNF--FTAVLSR 166 (380)
Q Consensus 94 ~~~I~~V~~g~~-----~~~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~--~~~~lt~ 166 (380)
...|..|+.... ..+.-..||.|..|-....++. ....+.. ....|..++...+ ..+.-..
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~-----------~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~ 106 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT-----------IPKAQQM-HTGPVLDVCWSDDGSKVFTASC 106 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCE-----------EEEEEEE-CSSCEEEEEECTTSSEEEEEET
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCce-----------eEEEecc-ccCCEEEEEECcCCCEEEEEcC
Confidence 447999988776 2333356888999865432211 0011111 1234666665433 4555567
Q ss_pred CCcEEEEEeCCCCccCCCCCCCcccccccccccCCCCEEEEEe--cCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCC
Q 016940 167 EGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAA--GYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTD 244 (380)
Q Consensus 167 ~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i~~--g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~ 244 (380)
+|.|..|-..... ..... ....+|..++. ..+...+++...|| .|+.|-....
T Consensus 107 dg~v~iwd~~~~~------------~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg-~i~vwd~~~~---------- 161 (368)
T 3mmy_A 107 DKTAKMWDLSSNQ------------AIQIA--QHDAPVKTIHWIKAPNYSCVMTGSWDK-TLKFWDTRSS---------- 161 (368)
T ss_dssp TSEEEEEETTTTE------------EEEEE--ECSSCEEEEEEEECSSCEEEEEEETTS-EEEEECSSCS----------
T ss_pred CCcEEEEEcCCCC------------ceeec--cccCceEEEEEEeCCCCCEEEEccCCC-cEEEEECCCC----------
Confidence 8889988433211 11111 23445777776 66655555555688 9999943211
Q ss_pred CCCCeeeeeeecCCCccEEEEccCceEEEEeCCCCEEEEeCCCCCCccCCCCCCccccEEeccc--CCCcEEEEEecCCe
Q 016940 245 EKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQAL--NDVKAIHVATGDYT 322 (380)
Q Consensus 245 ~~~p~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~p~~i~~~--~~~~i~~i~~G~~~ 322 (380)
..+..+. ....+..+..-....++.+.++.++.|-...... ....+... ....+..+......
T Consensus 162 ----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 226 (368)
T 3mmy_A 162 ----NPMMVLQ-LPERCYCADVIYPMAVVATAERGLIVYQLENQPS----------EFRRIESPLKHQHRCVAIFKDKQN 226 (368)
T ss_dssp ----SCSEEEE-CSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCE----------EEEECCCSCSSCEEEEEEEECTTS
T ss_pred ----cEEEEEe-cCCCceEEEecCCeeEEEeCCCcEEEEEeccccc----------hhhhccccccCCCceEEEcccCCC
Confidence 1111111 1224555555566778888899999997644211 01111111 11123333333332
Q ss_pred ----EEEEeeCCCEEEEECCC
Q 016940 323 ----TFVVSEDGDVYSFGCGE 339 (380)
Q Consensus 323 ----t~~l~~~g~v~~wG~n~ 339 (380)
.++-..+|.|..|-.+.
T Consensus 227 ~~~~~~~~~~dg~i~i~~~~~ 247 (368)
T 3mmy_A 227 KPTGFALGSIEGRVAIHYINP 247 (368)
T ss_dssp CEEEEEEEETTSEEEEEESSC
T ss_pred CCCeEEEecCCCcEEEEecCC
Confidence 55556788888886553
No 31
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=91.24 E-value=9.5 Score=35.55 Aligned_cols=238 Identities=10% Similarity=0.005 Sum_probs=119.7
Q ss_pred EecCCCeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeCCC-ceEEEecCCcEEEeeCCCCCC
Q 016940 48 AIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAG-RTMLISDAGQVYAFGKDSFGE 126 (380)
Q Consensus 48 i~~G~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g~~-~~~~lt~~G~vy~~G~n~~gq 126 (380)
++......+.-..||.|..|-.... .....+.. ....|..++.... ..+.-..||.|..|-.... +
T Consensus 128 ~~~~~~~l~sgs~dg~i~vwd~~~~-----------~~~~~~~~-h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~-~ 194 (464)
T 3v7d_B 128 LQFEDNYVITGADDKMIRVYDSINK-----------KFLLQLSG-HDGGVWALKYAHGGILVSGSTDRTVRVWDIKKG-C 194 (464)
T ss_dssp EEEETTEEEEEETTSCEEEEETTTT-----------EEEEEECC-CSSCEEEEEECSTTEEEEEETTSCEEEEETTTT-E
T ss_pred EEECCCEEEEEcCCCcEEEEECCCC-----------cEEEEEeC-CCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCC-c
Confidence 3444556666678899999964321 11111221 2236888876644 3444567899999965321 1
Q ss_pred CccCCCCceeecCCeeecccCCccEEEEeeC---C-CeEEEEecCCcEEEEEeCCCCccCCCCCCCcc-----ccc----
Q 016940 127 AEYGVQGTKLVTSPQLVESLKNIFVVQAAIG---N-FFTAVLSREGRVYTFSWGNDARLGHHTEPNDV-----EPH---- 193 (380)
Q Consensus 127 lG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g---~-~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~-----~p~---- 193 (380)
. ...+. .....|..++.. . ...+.-..+|.|..|-................ .|.
T Consensus 195 -------~-----~~~~~-~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (464)
T 3v7d_B 195 -------C-----THVFE-GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPY 261 (464)
T ss_dssp -------E-----EEEEC-CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTT
T ss_pred -------E-----EEEEC-CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeE
Confidence 0 00111 112335555432 2 34555678899998865543222111100000 000
Q ss_pred cccc-ccCCCCEEEEEecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEcc--Cce
Q 016940 194 PLLG-TLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAG--AWH 270 (380)
Q Consensus 194 ~v~~-~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G--~~h 270 (380)
.+.. ......+..++......+.-.. || .|+.|-... ...+..+......|..++.. ...
T Consensus 262 ~~~~~~~~~~~v~~~~~~~~~l~~~~~--d~-~i~vwd~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~~ 324 (464)
T 3v7d_B 262 FVGVLRGHMASVRTVSGHGNIVVSGSY--DN-TLIVWDVAQ--------------MKCLYILSGHTDRIYSTIYDHERKR 324 (464)
T ss_dssp EEEEECCCSSCEEEEEEETTEEEEEET--TS-CEEEEETTT--------------TEEEEEECCCSSCEEEEEEETTTTE
T ss_pred EEEEccCccceEEEEcCCCCEEEEEeC--CC-eEEEEECCC--------------CcEEEEecCCCCCEEEEEEcCCCCE
Confidence 0000 1122346666555554444444 78 888885321 22233333333345555443 345
Q ss_pred EEEEeCCCCEEEEeCCCCCCccCCCCCCccccEEecccCCCcEEEEEecCCeEEEEeeCCCEEEEECCCC
Q 016940 271 AAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGES 340 (380)
Q Consensus 271 ~~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~t~~l~~~g~v~~wG~n~~ 340 (380)
.+.-..+|.|+.|-.... .....+.. ....|..++....+.+.-..||.|..|=.+..
T Consensus 325 l~sg~~dg~i~vwd~~~~-----------~~~~~~~~-h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~ 382 (464)
T 3v7d_B 325 CISASMDTTIRIWDLENG-----------ELMYTLQG-HTALVGLLRLSDKFLVSAAADGSIRGWDANDY 382 (464)
T ss_dssp EEEEETTSCEEEEETTTT-----------EEEEEECC-CSSCEEEEEECSSEEEEEETTSEEEEEETTTC
T ss_pred EEEEeCCCcEEEEECCCC-----------cEEEEEeC-CCCcEEEEEEcCCEEEEEeCCCcEEEEECCCC
Confidence 666778899999965331 11111221 23356666666666666678899999976543
No 32
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=90.34 E-value=9 Score=33.79 Aligned_cols=219 Identities=14% Similarity=0.079 Sum_probs=120.8
Q ss_pred CCCcEEEEEeC--CCceEEEecCCcEEEeeCCCCCCCccCCCCceeecCCeeecccCCccEEEEeeC---CCeEEEEecC
Q 016940 93 QGIRIIQAAAG--AGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIG---NFFTAVLSRE 167 (380)
Q Consensus 93 ~~~~I~~V~~g--~~~~~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g---~~~~~~lt~~ 167 (380)
.+..+..+... ..+.+++|++|++|..-..+. ..+ ... . + ..++.+|..+.+- ....+++|++
T Consensus 22 ~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~l---p~~---~~~-~----l-l~~~e~i~~v~~~~~~~~~~v~~T~~ 89 (276)
T 3no0_A 22 EKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQA---LQG---SKV-S----L-KSREEKIVGAFIREKFGNRLLLATKK 89 (276)
T ss_dssp SCCCEEEEEEEETTSCEEEEETTSEEEEECSHHH---HTS---EEC-C----C-SSTTCCEEEEEEGGGSCSEEEEEETT
T ss_pred CCCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhC---ccC---ccc-c----c-CCCCCEEEEEECCcCCCCEEEEEeCC
Confidence 44566666443 445889999999998754322 101 000 0 3 3356778888762 2468889999
Q ss_pred CcEEEEEeCCCCccCCCCCCCcccccccccccCCCCEEEEEec--CCceEEEEEeCCCCEEEEEecCCCCccCCCCCCCC
Q 016940 168 GRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAG--YCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDE 245 (380)
Q Consensus 168 G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i~~g--~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~ 245 (380)
|.+.-.-...+.+ . .....-+.. .++..++.+... ..+.+++++ +| ++|.+-..+.-..|......
T Consensus 90 G~iKr~~l~~~~~---~----~~G~~~i~l-kegD~l~~~~~~~~~~~ill~T~--~G-~~~r~~~~eip~~gR~a~Gv- 157 (276)
T 3no0_A 90 GYVKKIPLAEFEY---K----AQGMPIIKL-TEGDEVVSIASSVDETHILLFTK--KG-RVARFSVREVPPSTPGARGV- 157 (276)
T ss_dssp SEEEEEEGGGTTT---C----STTEECSCC-CTTCCEEEEEECCSSCEEEEEET--TS-EEEEEEGGGSCBCCTTCCCE-
T ss_pred CEEEEEEHHHhhh---h----cCCeEEEec-CCCCEEEEEEEeCCCCEEEEEEC--CC-EEEEEEhhhCCCcCCCCCCE-
Confidence 9888665444321 0 011111111 233445555433 445677776 89 99999776655555433221
Q ss_pred CCCeeeeeeecCCCccEEEEcc--CceEEEEeCCCCEEEEeCCCCCCccCCCCCCccccEEecccCCCcEEEE--EecCC
Q 016940 246 KHPRLIEQFQLLNLQPVVVAAG--AWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHV--ATGDY 321 (380)
Q Consensus 246 ~~p~~~~~~~~~~~~i~~i~~G--~~h~~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i--~~G~~ 321 (380)
....+. .+.+|+.+... ....+++|++|.+.-.-.+++...+.+....... ..+.+++.+ ..++.
T Consensus 158 ----~~i~L~-~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i------~~~~~lv~~~~~~~~~ 226 (276)
T 3no0_A 158 ----QGIKLE-KNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS------GTKDTLVDLIPIKEEV 226 (276)
T ss_dssp ----ECCCCC-TTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC------CSSSCEEEEEEESSEE
T ss_pred ----EEEccC-CCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE------cCCCcEEEEEEeCCCC
Confidence 111121 23456655433 3467888999998877766554333221110111 122234433 23567
Q ss_pred eEEEEeeCCCEEE--EECCCCCCCCCC
Q 016940 322 TTFVVSEDGDVYS--FGCGESASLGHN 346 (380)
Q Consensus 322 ~t~~l~~~g~v~~--wG~n~~gqlG~~ 346 (380)
..++++++|++.. +-.++--.+|.+
T Consensus 227 ~i~~~t~~G~~ir~~~~~~~i~~~~R~ 253 (276)
T 3no0_A 227 ELLITTKNGKAFYDKINQKDIPLSTKK 253 (276)
T ss_dssp EEEEEETTSCEEEEEEEGGGSCBCCTT
T ss_pred EEEEEcCCCeEEEeeeCHHHCCCcCCC
Confidence 8888999999999 766665555544
No 33
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=89.39 E-value=11 Score=33.36 Aligned_cols=203 Identities=7% Similarity=-0.063 Sum_probs=97.6
Q ss_pred eceEEecCC--CeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeCCC--ceEEEecCCcEEEe
Q 016940 44 ENSQAIAGP--GHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAG--RTMLISDAGQVYAF 119 (380)
Q Consensus 44 ~i~~i~~G~--~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g~~--~~~~lt~~G~vy~~ 119 (380)
.|..++... ...+.-..||.|+.|-.... .....+.. ....|..++.... +.+....||.|+.|
T Consensus 34 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-----------~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 34 PLTQVKYNKEGDLLFSCSKDSSASVWYSLNG-----------ERLGTLDG-HTGTIWSIDVDCFTKYCVTGSADYSIKLW 101 (369)
T ss_dssp CEEEEEECTTSCEEEEEESSSCEEEEETTTC-----------CEEEEECC-CSSCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred eEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc-----------hhhhhhhh-cCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 455555443 34444467889999953321 11122221 2236777776543 34445678889999
Q ss_pred eCCCCCCCccCCCCceeecCCeeecccCCccEEEEeeCC--CeEEEEecC-----CcEEEEEeCCCCccCCCCCCCcccc
Q 016940 120 GKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGN--FFTAVLSRE-----GRVYTFSWGNDARLGHHTEPNDVEP 192 (380)
Q Consensus 120 G~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~--~~~~~lt~~-----G~vy~~G~n~~gqlg~~~~~~~~~p 192 (380)
-......+ .. +. ....|..++... ...++...+ |.|+.|-..................
T Consensus 102 d~~~~~~~-------~~------~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~ 166 (369)
T 3zwl_B 102 DVSNGQCV-------AT------WK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPI 166 (369)
T ss_dssp ETTTCCEE-------EE------EE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCS
T ss_pred ECCCCcEE-------EE------ee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccccccee
Confidence 65321110 00 11 122344444433 334444455 7888776544322111100000011
Q ss_pred cccccccCCCCEEEEEecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEcc--Cce
Q 016940 193 HPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAG--AWH 270 (380)
Q Consensus 193 ~~v~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G--~~h 270 (380)
..+........+..++.......+++...+| .|+.|-.... ...+..+......|..++.. ...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~-------------~~~~~~~~~~~~~v~~~~~~~~~~~ 232 (369)
T 3zwl_B 167 HKIITHEGLDAATVAGWSTKGKYIIAGHKDG-KISKYDVSNN-------------YEYVDSIDLHEKSISDMQFSPDLTY 232 (369)
T ss_dssp EEEECCTTCCCEEEEEECGGGCEEEEEETTS-EEEEEETTTT-------------TEEEEEEECCSSCEEEEEECTTSSE
T ss_pred eeccCCcCccceeEEEEcCCCCEEEEEcCCC-EEEEEECCCC-------------cEeEEEEecCCCceeEEEECCCCCE
Confidence 1111111112577777666555555555588 9999953221 12233333334455555443 334
Q ss_pred EEEEeCCCCEEEEeCCC
Q 016940 271 AAVVGQDGRVCTWGWGR 287 (380)
Q Consensus 271 ~~~lt~~g~vy~wG~n~ 287 (380)
.++.+.+|.|+.|-...
T Consensus 233 l~~~~~d~~i~v~d~~~ 249 (369)
T 3zwl_B 233 FITSSRDTNSFLVDVST 249 (369)
T ss_dssp EEEEETTSEEEEEETTT
T ss_pred EEEecCCceEEEEECCC
Confidence 55556788888886543
No 34
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=89.27 E-value=12 Score=33.73 Aligned_cols=255 Identities=9% Similarity=-0.005 Sum_probs=122.8
Q ss_pred eeceEEecCCCeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeCCC---------ceEEEecC
Q 016940 43 RENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAG---------RTMLISDA 113 (380)
Q Consensus 43 ~~i~~i~~G~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g~~---------~~~~lt~~ 113 (380)
..|..++......+.-..||.|+.|-...... .........+.. ....|..++.... ..+....+
T Consensus 17 ~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~-----~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~g~~~~~l~s~~~d 90 (397)
T 1sq9_A 17 ADIFSVSACNSFTVSCSGDGYLKVWDNKLLDN-----ENPKDKSYSHFV-HKSGLHHVDVLQAIERDAFELCLVATTSFS 90 (397)
T ss_dssp SCEEEEEECSSEEEEEETTSEEEEEESBCCTT-----CCGGGGEEEEEC-CTTCEEEEEEEEEEETTTEEEEEEEEEETT
T ss_pred cCeEEEEecCCeEEEEcCCCEEEEEECCCccc-----ccCCCcceEEec-CCCcEEEEEEecccccCCccccEEEEEcCC
Confidence 35666666666666778899999997543210 001111222221 2235777765433 33444578
Q ss_pred CcEEEeeCCCCCCCccCCCCceeecCCeeecccC----CccEEEEeeC------CCe-EEEEecCCcEEEEEeCCCCccC
Q 016940 114 GQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLK----NIFVVQAAIG------NFF-TAVLSREGRVYTFSWGNDARLG 182 (380)
Q Consensus 114 G~vy~~G~n~~gqlG~~~~~~~~~~~p~~v~~~~----~~~i~~i~~g------~~~-~~~lt~~G~vy~~G~n~~gqlg 182 (380)
|.|+.|-...... ........+.... ...|..++.. ... .+.-..+|.|+.|-......-.
T Consensus 91 g~i~iw~~~~~~~--------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 162 (397)
T 1sq9_A 91 GDLLFYRITREDE--------TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES 162 (397)
T ss_dssp SCEEEEEEEECTT--------TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHH
T ss_pred CCEEEEEccCCcc--------cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccc
Confidence 8888885432110 0000011111121 2446666654 334 4455678999988554300000
Q ss_pred CCCCCCccccc-cccc-----ccCCCCEEEEEecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeec
Q 016940 183 HHTEPNDVEPH-PLLG-----TLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQL 256 (380)
Q Consensus 183 ~~~~~~~~~p~-~v~~-----~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~ 256 (380)
... .....|. .+.. ......|..++..... .+++...+| .|+.|-... ...+..+..
T Consensus 163 ~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg-~i~i~d~~~--------------~~~~~~~~~ 225 (397)
T 1sq9_A 163 NSL-TLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNG-TVQISELST--------------LRPLYNFES 225 (397)
T ss_dssp HHT-TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTS-EEEEEETTT--------------TEEEEEEEC
T ss_pred ccc-eeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCC-cEEEEECCC--------------CceeEEEec
Confidence 000 0001111 1110 1234457777777666 666665688 999995322 122222222
Q ss_pred ---C---CCccEEEEc--cCceEEEEeCC---CCEEEEeCCCCCCccCCCCCCccccEEeccc------------CCCcE
Q 016940 257 ---L---NLQPVVVAA--GAWHAAVVGQD---GRVCTWGWGRYGCLGHGNEECESVPKVVQAL------------NDVKA 313 (380)
Q Consensus 257 ---~---~~~i~~i~~--G~~h~~~lt~~---g~vy~wG~n~~gqLG~~~~~~~~~p~~i~~~------------~~~~i 313 (380)
. ...+..++. ...+.++-..+ |.|+.|-...... ...+... ....|
T Consensus 226 ~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~v 294 (397)
T 1sq9_A 226 QHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER-----------IGSLSVPTHSSQASLGEFAHSSWV 294 (397)
T ss_dssp CC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE-----------EEEECBC--------CCBSBSSCE
T ss_pred cccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc-----------cceeccCcccccccccccccCCcE
Confidence 2 334555544 23445555566 7888887543211 1111110 22346
Q ss_pred EEEEec--CCeEEEEeeCCCEEEEECCC
Q 016940 314 IHVATG--DYTTFVVSEDGDVYSFGCGE 339 (380)
Q Consensus 314 ~~i~~G--~~~t~~l~~~g~v~~wG~n~ 339 (380)
..++.. ....+.-..||.|+.|-...
T Consensus 295 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 322 (397)
T 1sq9_A 295 MSLSFNDSGETLCSAGWDGKLRFWDVKT 322 (397)
T ss_dssp EEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 555554 33344445688899996543
No 35
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=89.04 E-value=11 Score=33.11 Aligned_cols=207 Identities=15% Similarity=0.083 Sum_probs=114.2
Q ss_pred CCCeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeC---CCceEEEecCCcEEEeeCCCCCCC
Q 016940 51 GPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAG---AGRTMLISDAGQVYAFGKDSFGEA 127 (380)
Q Consensus 51 G~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g---~~~~~~lt~~G~vy~~G~n~~gql 127 (380)
-.++.+++|++|++|..-....-.. ... .+ ...+++|+.+.+. ....+++|++|.+.-.-..++-+-
T Consensus 34 t~~~ll~fT~~G~v~~~~~~~lp~~------~~~---~l-l~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~ 103 (276)
T 3no0_A 34 FTEGLFLVSNRGRVYWIAGSQALQG------SKV---SL-KSREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYK 103 (276)
T ss_dssp TTSCEEEEETTSEEEEECSHHHHTS------EEC---CC-SSTTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTC
T ss_pred CCCEEEEEcCCCeEEEEEhhhCccC------ccc---cc-CCCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhh
Confidence 3457889999999997542211000 000 03 3357789988762 246788999998888765444211
Q ss_pred ccCCCCceeecCCeeecccCCccEEEEee--CCCeEEEEecCCcEEEEEeCCCCccCCCCCCCcccccccccccCCCCEE
Q 016940 128 EYGVQGTKLVTSPQLVESLKNIFVVQAAI--GNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVV 205 (380)
Q Consensus 128 G~~~~~~~~~~~p~~v~~~~~~~i~~i~~--g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~ 205 (380)
..+ ..-+...++..++.+.. +.++.+++|++|++|.+-......+|....... .+.. ..+..|+
T Consensus 104 ~~G---------~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~----~i~L-~~~d~vv 169 (276)
T 3no0_A 104 AQG---------MPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQ----GIKL-EKNDETS 169 (276)
T ss_dssp STT---------EECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE----CCCC-CTTCCEE
T ss_pred cCC---------eEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEE----EEcc-CCCCEEE
Confidence 000 01111223445555443 455789999999999886665555554332211 1111 3345677
Q ss_pred EEEecC--CceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEE--EccCceEEEEeCCCCEE
Q 016940 206 QIAAGY--CYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVV--AAGAWHAAVVGQDGRVC 281 (380)
Q Consensus 206 ~i~~g~--~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i--~~G~~h~~~lt~~g~vy 281 (380)
.+.... .+.+++++ +| .+.-.-.+.+...+++...... + ..+.+++.+ ..+.+..+++|++|++.
T Consensus 170 ~~~~~~~~~~ll~~T~--~G-~~kr~~~~e~~~~~R~gkGv~~-------i-~~~~~lv~~~~~~~~~~i~~~t~~G~~i 238 (276)
T 3no0_A 170 GLRIWNGEPYLLVITA--KG-RVKKISHEEIPKTNRGVKGTEV-------S-GTKDTLVDLIPIKEEVELLITTKNGKAF 238 (276)
T ss_dssp EEEEESSCSEEEEEET--TS-CEEEEEGGGSCCCCTTCCCEEC-------C-CSSSCEEEEEEESSEEEEEEEETTSCEE
T ss_pred EEEEeCCCCEEEEEeC--CC-cEEEeEHHHcccCCCCCcceEE-------E-cCCCcEEEEEEeCCCCEEEEEcCCCeEE
Confidence 665443 34555555 77 6666654444333332111100 1 123344433 34567899999999999
Q ss_pred E--EeCCCCCCcc
Q 016940 282 T--WGWGRYGCLG 292 (380)
Q Consensus 282 ~--wG~n~~gqLG 292 (380)
. +-.++...+|
T Consensus 239 r~~~~~~~i~~~~ 251 (276)
T 3no0_A 239 YDKINQKDIPLST 251 (276)
T ss_dssp EEEEEGGGSCBCC
T ss_pred EeeeCHHHCCCcC
Confidence 8 8766655444
No 36
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=88.57 E-value=14 Score=33.62 Aligned_cols=141 Identities=12% Similarity=0.068 Sum_probs=71.0
Q ss_pred ecCCCeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEe---CCCceEEEecCCcEEEeeCCCCC
Q 016940 49 IAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAA---GAGRTMLISDAGQVYAFGKDSFG 125 (380)
Q Consensus 49 ~~G~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~---g~~~~~~lt~~G~vy~~G~n~~g 125 (380)
+......+.-..||.++.|-..... ....+....+..+.+ .....+.-..+|.|..|-... +
T Consensus 65 s~~g~~l~~~~~d~~v~i~d~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~ 129 (420)
T 3vl1_A 65 EKVGSHLYKARLDGHDFLFNTIIRD--------------GSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNF-N 129 (420)
T ss_dssp EEEETTEEEEEETTEEEEEECCSEE--------------TTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTS-C
T ss_pred eecCCeEEEEEcCCcEEEEEecccc--------------eeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCC-c
Confidence 3334455566678888888643211 111111223333322 233344446788888885321 1
Q ss_pred CCccCCCCceeecCCeeecccCCccEEEEeeCCC--eEEEEecCCcEEEEEeCCCCccCCCCCCCcccccccccccCCCC
Q 016940 126 EAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNF--FTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIP 203 (380)
Q Consensus 126 qlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~--~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~ 203 (380)
+ +..........|..++...+ ..+.-..+|.|+.|-..... ....+. .....
T Consensus 130 ~-------------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~-----------~~~~~~--~h~~~ 183 (420)
T 3vl1_A 130 L-------------QREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS-----------NPRTLI--GHRAT 183 (420)
T ss_dssp E-------------EEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-----------CCEEEE--CCSSC
T ss_pred c-------------eeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc-----------CceEEc--CCCCc
Confidence 1 01111112234666665433 44455678889988433211 011111 22345
Q ss_pred EEEEEecCCceEEEEEeCCCCEEEEEec
Q 016940 204 VVQIAAGYCYLLALACQPSGMAVYSVGC 231 (380)
Q Consensus 204 i~~i~~g~~~~~~l~~~~~G~~vy~~G~ 231 (380)
|..++...+...+++...|| .|..|-.
T Consensus 184 v~~~~~~~~~~~l~s~~~d~-~v~iwd~ 210 (420)
T 3vl1_A 184 VTDIAIIDRGRNVLSASLDG-TIRLWEC 210 (420)
T ss_dssp EEEEEEETTTTEEEEEETTS-CEEEEET
T ss_pred EEEEEEcCCCCEEEEEcCCC-cEEEeEC
Confidence 77777776665555655688 8999954
No 37
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=86.99 E-value=18 Score=32.97 Aligned_cols=156 Identities=16% Similarity=0.016 Sum_probs=80.4
Q ss_pred EEeCCCceEEE---ecCCcEEEeeCCCCCCCccCCCCceeecCCeeecccCCccEEEEeeCC---CeEEEEecCCcEEEE
Q 016940 100 AAAGAGRTMLI---SDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGN---FFTAVLSREGRVYTF 173 (380)
Q Consensus 100 V~~g~~~~~~l---t~~G~vy~~G~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~---~~~~~lt~~G~vy~~ 173 (380)
+++......++ ..+|.|+.|-.+..+++... .+ .+.. ....|..++... ...+.-..+|.|..|
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~--------~~-~~~~-h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw 109 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDKN--------VP-LVCG-HTAPVLDIAWCPHNDNVIASGSEDCTVMVW 109 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEECCTT--------CC-CBCC-CSSCEEEEEECTTCTTEEEEEETTSEEEEE
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCCCCC--------Cc-eEec-CCCCEEEEEeCCCCCCEEEEEeCCCeEEEE
Confidence 45555555554 45789999976554432110 00 1111 123477777643 344445678999988
Q ss_pred EeCCCCccCCCCCCCcccccccccccCCCCEEEEEecCCc-eEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeee
Q 016940 174 SWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCY-LLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIE 252 (380)
Q Consensus 174 G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i~~g~~~-~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~ 252 (380)
-....+.... ...+.... ......|..++..... .++++...|| .|+.|-... ...+.
T Consensus 110 ~~~~~~~~~~-----~~~~~~~~-~~h~~~v~~~~~~p~~~~~l~s~~~dg-~i~iwd~~~--------------~~~~~ 168 (402)
T 2aq5_A 110 EIPDGGLVLP-----LREPVITL-EGHTKRVGIVAWHPTAQNVLLSAGCDN-VILVWDVGT--------------GAAVL 168 (402)
T ss_dssp ECCTTCCSSC-----BCSCSEEE-ECCSSCEEEEEECSSBTTEEEEEETTS-CEEEEETTT--------------TEEEE
T ss_pred EccCCCCccc-----cCCceEEe-cCCCCeEEEEEECcCCCCEEEEEcCCC-EEEEEECCC--------------CCccE
Confidence 5543221110 00111111 1233558888887664 4555555688 999995332 12222
Q ss_pred ee--ecCCCccEEEEcc--CceEEEEeCCCCEEEEeCC
Q 016940 253 QF--QLLNLQPVVVAAG--AWHAAVVGQDGRVCTWGWG 286 (380)
Q Consensus 253 ~~--~~~~~~i~~i~~G--~~h~~~lt~~g~vy~wG~n 286 (380)
.+ ......|..++.. ....+.-..+|.|+.|-..
T Consensus 169 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 206 (402)
T 2aq5_A 169 TLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPR 206 (402)
T ss_dssp EECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETT
T ss_pred EEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCC
Confidence 22 2233345555443 3445555678889998754
No 38
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=86.86 E-value=23 Score=34.06 Aligned_cols=150 Identities=14% Similarity=0.139 Sum_probs=76.1
Q ss_pred cEEEEEeCCCc---eEEEecCCcEEEeeCCCCCCCccCCCCceeecCCeeecccCCc---cEEEEeeCCC---eEEEEec
Q 016940 96 RIIQAAAGAGR---TMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNI---FVVQAAIGNF---FTAVLSR 166 (380)
Q Consensus 96 ~I~~V~~g~~~---~~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~~~p~~v~~~~~~---~i~~i~~g~~---~~~~lt~ 166 (380)
.|..++..... .+.-..+|.+..|-.... + . ...+.. ... .|..++...+ ..+....
T Consensus 162 ~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~-~---------~---~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~ 227 (615)
T 1pgu_A 162 RINACHLKQSRPMRSMTVGDDGSVVFYQGPPF-K---------F---SASDRT-HHKQGSFVRDVEFSPDSGEFVITVGS 227 (615)
T ss_dssp CEEEEEECSSSSCEEEEEETTTEEEEEETTTB-E---------E---EEEECS-SSCTTCCEEEEEECSTTCCEEEEEET
T ss_pred cEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc-c---------e---eeeecc-cCCCCceEEEEEECCCCCCEEEEEeC
Confidence 57777665553 444467788888853211 0 0 001111 112 4667766544 4455577
Q ss_pred CCcEEEEEeCCCCccCCCCCCCcccccccccc--cCCCCEEEEEecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCC
Q 016940 167 EGRVYTFSWGNDARLGHHTEPNDVEPHPLLGT--LENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTD 244 (380)
Q Consensus 167 ~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~--~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~ 244 (380)
+|.|+.|-...... ...+... .....|..++.. ....+++...|| .|..|-....
T Consensus 228 dg~i~vwd~~~~~~-----------~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~-~i~~wd~~~~---------- 284 (615)
T 1pgu_A 228 DRKISCFDGKSGEF-----------LKYIEDDQEPVQGGIFALSWL-DSQKFATVGADA-TIRVWDVTTS---------- 284 (615)
T ss_dssp TCCEEEEETTTCCE-----------EEECCBTTBCCCSCEEEEEES-SSSEEEEEETTS-EEEEEETTTT----------
T ss_pred CCeEEEEECCCCCE-----------eEEecccccccCCceEEEEEc-CCCEEEEEcCCC-cEEEEECCCC----------
Confidence 89999884332110 0111000 223457777776 555555555588 9999954321
Q ss_pred CCCCeeeeeeecC----CCccEEEEc-cCceEEEEeCCCCEEEEeCC
Q 016940 245 EKHPRLIEQFQLL----NLQPVVVAA-GAWHAAVVGQDGRVCTWGWG 286 (380)
Q Consensus 245 ~~~p~~~~~~~~~----~~~i~~i~~-G~~h~~~lt~~g~vy~wG~n 286 (380)
..+..+... ...+..+.. .....++.+.+|.++.|-..
T Consensus 285 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~ 327 (615)
T 1pgu_A 285 ----KCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELG 327 (615)
T ss_dssp ----EEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred ----cEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECC
Confidence 111111111 112222222 45566677788999998754
No 39
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=86.84 E-value=23 Score=34.06 Aligned_cols=148 Identities=9% Similarity=-0.094 Sum_probs=75.7
Q ss_pred EEEEeeCCCeEEEEec-CCcEEEEEeCCCCccCCCCCCCcccccccccccCCCCEEEEEecCCceEEEEEeCCCCEEEEE
Q 016940 151 VVQAAIGNFFTAVLSR-EGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSV 229 (380)
Q Consensus 151 i~~i~~g~~~~~~lt~-~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~ 229 (380)
+..++......++-.. +|.|+.|-.... + ..+..+ ......|..++...+...+++...|| .|+.|
T Consensus 449 ~~~~~~~~~~l~~~~~~d~~i~~~~~~~~-~---------~~~~~~--~~~~~~v~~~~~s~~g~~l~~~~~dg-~i~iw 515 (615)
T 1pgu_A 449 GSAVSLSQNYVAVGLEEGNTIQVFKLSDL-E---------VSFDLK--TPLRAKPSYISISPSETYIAAGDVMG-KILLY 515 (615)
T ss_dssp EEEEEECSSEEEEEETTTSCEEEEETTEE-E---------EEEECS--SCCSSCEEEEEECTTSSEEEEEETTS-CEEEE
T ss_pred ceEEEEcCCEEEEeecCCCeEEEEECCCc-c---------cccccc--CCccCceEEEEECCCCCEEEEcCCCC-eEEEe
Confidence 4555544444445555 788887743321 0 000111 12234588888876666666655688 99999
Q ss_pred ecCCCCccCCCCCCCCCCCeeeeeeec-CCCccEEEEc------------cCceEEEEeCCCCEEEEeCCCCCCccCCCC
Q 016940 230 GCGLGGKLGHGSRTDEKHPRLIEQFQL-LNLQPVVVAA------------GAWHAAVVGQDGRVCTWGWGRYGCLGHGNE 296 (380)
Q Consensus 230 G~n~~gqlg~~~~~~~~~p~~~~~~~~-~~~~i~~i~~------------G~~h~~~lt~~g~vy~wG~n~~gqLG~~~~ 296 (380)
-..... .+..+.. ....|..++. .....+.-..+|.|+.|-.....+
T Consensus 516 ~~~~~~--------------~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~------ 575 (615)
T 1pgu_A 516 DLQSRE--------------VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK------ 575 (615)
T ss_dssp ETTTTE--------------EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTC------
T ss_pred eCCCCc--------------ceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCce------
Confidence 643321 1111211 2234555544 334555567789999997644211
Q ss_pred CCccccEEecccCCCcEEEEEecCCeE-EEEeeCCCEEEEE
Q 016940 297 ECESVPKVVQALNDVKAIHVATGDYTT-FVVSEDGDVYSFG 336 (380)
Q Consensus 297 ~~~~~p~~i~~~~~~~i~~i~~G~~~t-~~l~~~g~v~~wG 336 (380)
+.....-....|..++-..+.. +....||.|..|-
T Consensus 576 -----~~~~~~~h~~~v~~l~~s~~~~l~s~~~d~~v~iw~ 611 (615)
T 1pgu_A 576 -----IIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWN 611 (615)
T ss_dssp -----CEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred -----echhhhcCccceEEEEEcCCCCeEEecCCceEEEEe
Confidence 1111111123455554433333 3334688899884
No 40
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=86.69 E-value=16 Score=32.15 Aligned_cols=197 Identities=11% Similarity=-0.028 Sum_probs=96.3
Q ss_pred eceEEecCCC-----eEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEe--------CCCceEEE
Q 016940 44 ENSQAIAGPG-----HSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAA--------GAGRTMLI 110 (380)
Q Consensus 44 ~i~~i~~G~~-----~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~--------g~~~~~~l 110 (380)
+|..++.... ..+.-..||.|..|-...... ....+.. ....|..+.. .....+.-
T Consensus 67 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----------~~~~~~~-~~~~v~~~~~~~~~~~s~~~~~l~~~ 135 (357)
T 3i2n_A 67 PIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM----------PVYSVKG-HKEIINAIDGIGGLGIGEGAPEIVTG 135 (357)
T ss_dssp CEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSS----------CSEEECC-CSSCEEEEEEESGGGCC-CCCEEEEE
T ss_pred cEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCc----------cEEEEEe-cccceEEEeeccccccCCCccEEEEE
Confidence 6667766653 344556788899886443210 0111111 1225666632 23344555
Q ss_pred ecCCcEEEeeCCCCCCCccCCCCceeecCCeeecccC---CccEEEEe------eCCCeEEEEecCCcEEEEEeCCCCcc
Q 016940 111 SDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLK---NIFVVQAA------IGNFFTAVLSREGRVYTFSWGNDARL 181 (380)
Q Consensus 111 t~~G~vy~~G~n~~gqlG~~~~~~~~~~~p~~v~~~~---~~~i~~i~------~g~~~~~~lt~~G~vy~~G~n~~gql 181 (380)
..||.|..|-....... ...+.... ...+..++ ......+.-..+|.|+.|-.....
T Consensus 136 ~~d~~i~vwd~~~~~~~------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-- 201 (357)
T 3i2n_A 136 SRDGTVKVWDPRQKDDP------------VANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA-- 201 (357)
T ss_dssp ETTSCEEEECTTSCSSC------------SEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE--
T ss_pred eCCCeEEEEeCCCCCCc------------ceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc--
Confidence 67889999965432110 01111111 12355554 233444555677888887432210
Q ss_pred CCCCCCCcccccccccccCCCCEEEEEecC---CceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCC
Q 016940 182 GHHTEPNDVEPHPLLGTLENIPVVQIAAGY---CYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLN 258 (380)
Q Consensus 182 g~~~~~~~~~p~~v~~~~~~~~i~~i~~g~---~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~ 258 (380)
+ .........|..++... ....+++...+| .|+.|-...... ........+....
T Consensus 202 ----------~--~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~---------~~~~~~~~~~~~~ 259 (357)
T 3i2n_A 202 ----------L--RWETNIKNGVCSLEFDRKDISMNKLVATSLEG-KFHVFDMRTQHP---------TKGFASVSEKAHK 259 (357)
T ss_dssp ----------E--EEEEECSSCEEEEEESCSSSSCCEEEEEESTT-EEEEEEEEEEET---------TTEEEEEEEECCS
T ss_pred ----------e--eeecCCCCceEEEEcCCCCCCCCEEEEECCCC-eEEEEeCcCCCc---------ccceeeeccCCCc
Confidence 1 11112234577777765 444444444588 999995432100 0000011111233
Q ss_pred CccEEEEccCc---eEEEEeCCCCEEEEeCCC
Q 016940 259 LQPVVVAAGAW---HAAVVGQDGRVCTWGWGR 287 (380)
Q Consensus 259 ~~i~~i~~G~~---h~~~lt~~g~vy~wG~n~ 287 (380)
..|..++...+ ..+.-..+|.|+.|-...
T Consensus 260 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 291 (357)
T 3i2n_A 260 STVWQVRHLPQNRELFLTAGGAGGLHLWKYEY 291 (357)
T ss_dssp SCEEEEEEETTEEEEEEEEETTSEEEEEEEEC
T ss_pred CCEEEEEECCCCCcEEEEEeCCCcEEEeecCC
Confidence 45556555433 445556789999997654
No 41
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=86.50 E-value=19 Score=32.83 Aligned_cols=151 Identities=10% Similarity=-0.035 Sum_probs=84.4
Q ss_pred EEEEeeCCCeEEEEecCCcEEEEEeCCCCccCCCCCCCcccccccccccCCCCEEEEEecCCceEEEEEeCCCCEEEEEe
Q 016940 151 VVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVG 230 (380)
Q Consensus 151 i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G 230 (380)
+..++-...+.++...+|.|+.|-..... ............|..++-..+...+++...+| .|+.|-
T Consensus 96 ~~~~~~s~~~l~~~~~d~~v~lw~~~~~~------------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg-~i~iwd 162 (401)
T 4aez_A 96 LNLLDWSNLNVVAVALERNVYVWNADSGS------------VSALAETDESTYVASVKWSHDGSFLSVGLGNG-LVDIYD 162 (401)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTCC------------EEEEEECCTTCCEEEEEECTTSSEEEEEETTS-CEEEEE
T ss_pred EEEEeecCCCEEEEECCCeEEEeeCCCCc------------EeEeeecCCCCCEEEEEECCCCCEEEEECCCC-eEEEEE
Confidence 33455556777888899999988543211 11111111345588887776655555555588 999995
Q ss_pred cCCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEccCceEEEEeCCCCEEEEeCCCCCCccCCCCCCccccEEecccCC
Q 016940 231 CGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALND 310 (380)
Q Consensus 231 ~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~p~~i~~~~~ 310 (380)
.... ..+..+......|..++......+.-..+|.|+.|-....+. ....+.. ..
T Consensus 163 ~~~~--------------~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----------~~~~~~~-~~ 217 (401)
T 4aez_A 163 VESQ--------------TKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANH----------QIGTLQG-HS 217 (401)
T ss_dssp TTTC--------------CEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC----------EEEEEEC-CS
T ss_pred CcCC--------------eEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcc----------eeeEEcC-CC
Confidence 3321 222233334456667777666777778899999997643211 1111111 22
Q ss_pred CcEEEEEec--CCeEEEEeeCCCEEEEECCC
Q 016940 311 VKAIHVATG--DYTTFVVSEDGDVYSFGCGE 339 (380)
Q Consensus 311 ~~i~~i~~G--~~~t~~l~~~g~v~~wG~n~ 339 (380)
..|..++.. ....+.-..||.|+.|-...
T Consensus 218 ~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 248 (401)
T 4aez_A 218 SEVCGLAWRSDGLQLASGGNDNVVQIWDARS 248 (401)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred CCeeEEEEcCCCCEEEEEeCCCeEEEccCCC
Confidence 245555443 23334445678888886553
No 42
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=86.34 E-value=19 Score=32.73 Aligned_cols=157 Identities=10% Similarity=-0.005 Sum_probs=80.7
Q ss_pred EecCCCeEEEE---ecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeCC---CceEEEecCCcEEEeeC
Q 016940 48 AIAGPGHSIAV---TSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGA---GRTMLISDAGQVYAFGK 121 (380)
Q Consensus 48 i~~G~~~~~~l---~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g~---~~~~~lt~~G~vy~~G~ 121 (380)
+++......++ ..+|.|+.|-.+..+.+.. ....+.. ....|..++... ...+.-..||.|..|-.
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~-------~~~~~~~-h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~ 111 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDK-------NVPLVCG-HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEI 111 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEECCT-------TCCCBCC-CSSCEEEEEECTTCTTEEEEEETTSEEEEEEC
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCCCC-------CCceEec-CCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEc
Confidence 45555555554 4578999997655443210 0001111 123688887754 33344457899999976
Q ss_pred CCCCCCccCCCCceeecCCeeecccCCccEEEEeeCCC---eEEEEecCCcEEEEEeCCCCccCCCCCCCcccccccccc
Q 016940 122 DSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNF---FTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGT 198 (380)
Q Consensus 122 n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~---~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~ 198 (380)
...+... ....+..........|..++...+ ..+.-..+|.|+.|-..... ....+...
T Consensus 112 ~~~~~~~-------~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~-----------~~~~~~~~ 173 (402)
T 2aq5_A 112 PDGGLVL-------PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA-----------AVLTLGPD 173 (402)
T ss_dssp CTTCCSS-------CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE-----------EEEEECTT
T ss_pred cCCCCcc-------ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC-----------ccEEEecC
Confidence 5432211 011111111112344666766544 34445678899988433210 01111001
Q ss_pred cCCCCEEEEEecCCceEEEEEeCCCCEEEEEec
Q 016940 199 LENIPVVQIAAGYCYLLALACQPSGMAVYSVGC 231 (380)
Q Consensus 199 ~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~ 231 (380)
.....|..++...+...+++...|| .|+.|-.
T Consensus 174 ~~~~~v~~~~~~~~~~~l~~~~~d~-~i~iwd~ 205 (402)
T 2aq5_A 174 VHPDTIYSVDWSRDGALICTSCRDK-RVRVIEP 205 (402)
T ss_dssp TCCSCEEEEEECTTSSCEEEEETTS-EEEEEET
T ss_pred CCCCceEEEEECCCCCEEEEEecCC-cEEEEeC
Confidence 2334588888775555555555588 9999953
No 43
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=86.23 E-value=21 Score=33.04 Aligned_cols=261 Identities=12% Similarity=0.056 Sum_probs=119.6
Q ss_pred eceEEecCCC---eEEEEecCCcEEEeeCCCCCCcCCCCCCCccce-eeccCCCCCcEEEEEeCCC---ceEEEecCCcE
Q 016940 44 ENSQAIAGPG---HSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRP-RPIRSLQGIRIIQAAAGAG---RTMLISDAGQV 116 (380)
Q Consensus 44 ~i~~i~~G~~---~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p-~~v~~~~~~~I~~V~~g~~---~~~~lt~~G~v 116 (380)
.|..++.... ..+....+|.|+.|-.......-. ......+ ..+.. ....|..++.... +.+.-..+|.|
T Consensus 130 ~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~--~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~dg~i 206 (430)
T 2xyi_A 130 EVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE--PSGECQPDLRLRG-HQKEGYGLSWNPNLNGYLLSASDDHTI 206 (430)
T ss_dssp CCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC--TTCCCCCSEEEEC-CSSCCCCEEECTTSTTEEEEECTTSCE
T ss_pred cEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC--ccccCCCcEEecC-CCCCeEEEEeCCCCCCeEEEEeCCCeE
Confidence 5556666553 233335678899887554211100 0000011 11111 1224555554333 34444568889
Q ss_pred EEeeCCCCCCCccCCCCceeecCCeeecccCCccEEEEeeCC---CeEEEEecCCcEEEEEeCCCCccCCCCCCCccccc
Q 016940 117 YAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGN---FFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPH 193 (380)
Q Consensus 117 y~~G~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~---~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~ 193 (380)
..|-.+...... ....+..........|..++... ...+....+|.|+.|-...... ..+.
T Consensus 207 ~vwd~~~~~~~~-------~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~---------~~~~ 270 (430)
T 2xyi_A 207 CLWDINATPKEH-------RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT---------SKPS 270 (430)
T ss_dssp EEEETTSCCBGG-------GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS---------SSCS
T ss_pred EEEeCCCCCCCC-------ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC---------Ccce
Confidence 888765422110 11111111111233477777643 3444556789999885432110 0111
Q ss_pred ccccccCCCCEEEEEecCCce-EEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEccC---c
Q 016940 194 PLLGTLENIPVVQIAAGYCYL-LALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGA---W 269 (380)
Q Consensus 194 ~v~~~~~~~~i~~i~~g~~~~-~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~---~ 269 (380)
... ......|..++...... ++++...+| .|..|-..... .+ +..+......|..++-.. .
T Consensus 271 ~~~-~~~~~~v~~i~~~p~~~~~l~tg~~dg-~v~vwd~~~~~-----------~~--~~~~~~h~~~v~~i~~sp~~~~ 335 (430)
T 2xyi_A 271 HTV-DAHTAEVNCLSFNPYSEFILATGSADK-TVALWDLRNLK-----------LK--LHSFESHKDEIFQVQWSPHNET 335 (430)
T ss_dssp EEE-ECCSSCEEEEEECSSCTTEEEEEETTS-EEEEEETTCTT-----------SC--SEEEECCSSCEEEEEECSSCTT
T ss_pred eEe-ecCCCCeEEEEeCCCCCCEEEEEeCCC-eEEEEeCCCCC-----------CC--eEEeecCCCCEEEEEECCCCCC
Confidence 111 12234577777765442 444444588 99999643211 11 222222334566665433 2
Q ss_pred eEEEEeCCCCEEEEeCCCCCCccCCCCCCccccEEeccc--CCCcEEEEEecCC---eEEEEeeCCCEEEEECC
Q 016940 270 HAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQAL--NDVKAIHVATGDY---TTFVVSEDGDVYSFGCG 338 (380)
Q Consensus 270 h~~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~p~~i~~~--~~~~i~~i~~G~~---~t~~l~~~g~v~~wG~n 338 (380)
..+.-..+|.|..|-....+..-.........|..+... ....|.+++-... ..+....||.|.+|--+
T Consensus 336 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 336 ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp EEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred EEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 345556788999997654321100000000012222212 1234666654433 33444568888888654
No 44
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=86.16 E-value=17 Score=31.82 Aligned_cols=69 Identities=4% Similarity=-0.125 Sum_probs=39.7
Q ss_pred CCEEEEEecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEcc-CceEEEEeCCCCE
Q 016940 202 IPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAG-AWHAAVVGQDGRV 280 (380)
Q Consensus 202 ~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G-~~h~~~lt~~g~v 280 (380)
.+|..++...+..++++...|| .|..|-... ...+..+.. ...+..++.. ..+.++...++.|
T Consensus 216 ~~v~~~~~s~~~~~l~s~s~Dg-~i~iwd~~~--------------~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~d~~i 279 (340)
T 4aow_A 216 GYLNTVTVSPDGSLCASGGKDG-QAMLWDLNE--------------GKHLYTLDG-GDIINALCFSPNRYWLCAATGPSI 279 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTC-EEEEEETTT--------------TEEEEEEEC-SSCEEEEEECSSSSEEEEEETTEE
T ss_pred CcEEEEEECCCCCEEEEEeCCC-eEEEEEecc--------------CceeeeecC-CceEEeeecCCCCceeeccCCCEE
Confidence 4588888776666666666688 999995332 122222221 1233333322 2355566678888
Q ss_pred EEEeCC
Q 016940 281 CTWGWG 286 (380)
Q Consensus 281 y~wG~n 286 (380)
+.|-..
T Consensus 280 ~iwd~~ 285 (340)
T 4aow_A 280 KIWDLE 285 (340)
T ss_dssp EEEETT
T ss_pred EEEECC
Confidence 888653
No 45
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=83.74 E-value=50 Score=35.26 Aligned_cols=196 Identities=16% Similarity=0.023 Sum_probs=91.1
Q ss_pred cEEEEEeCCC-ceEEEecCCcEEEeeCCCCCCCccCCCCceeecCCeeecccCCccEEEEeeC--CCeEEEEecCCcEEE
Q 016940 96 RIIQAAAGAG-RTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIG--NFFTAVLSREGRVYT 172 (380)
Q Consensus 96 ~I~~V~~g~~-~~~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g--~~~~~~lt~~G~vy~ 172 (380)
.|..++.... ..+....+|.++.|-.... ++ ...+.. ....|..++.. ....+.-..+|.|+.
T Consensus 1046 ~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~-~~------------~~~~~~-~~~~v~~~~~s~d~~~l~s~s~d~~v~i 1111 (1249)
T 3sfz_A 1046 TVKDFRLLQDSRLLSWSFDGTVKVWNVITG-RI------------ERDFTC-HQGTVLSCAISSDATKFSSTSADKTAKI 1111 (1249)
T ss_dssp CEEEEEECSSSEEEEEESSSEEEEEETTTT-CC------------CEEEEC-CSSCCCCEEECSSSSSCEEECCSSCCCE
T ss_pred cEEEEEEcCCCcEEEEECCCcEEEEECCCC-ce------------eEEEcc-cCCcEEEEEECCCCCEEEEEcCCCcEEE
Confidence 5666665544 3455567888888865321 11 001111 11113333322 223444456777776
Q ss_pred EEeCCCCccCCCCCCCcccccccccccCCCCEEEEEecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeee-
Q 016940 173 FSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLI- 251 (380)
Q Consensus 173 ~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~- 251 (380)
|-...... ...+. .....|..++...+...+++...|| .|+.|-......+.. ..|...
T Consensus 1112 wd~~~~~~-----------~~~l~--~h~~~v~~~~~s~dg~~lat~~~dg-~i~vwd~~~~~~~~~------~~~~~~~ 1171 (1249)
T 3sfz_A 1112 WSFDLLSP-----------LHELK--GHNGCVRCSAFSLDGILLATGDDNG-EIRIWNVSDGQLLHS------CAPISVE 1171 (1249)
T ss_dssp ECSSSSSC-----------SBCCC--CCSSCEEEEEECSSSSEEEEEETTS-CCCEEESSSSCCCCC------CCCCC--
T ss_pred EECCCcce-----------eeeec--cCCCcEEEEEECCCCCEEEEEeCCC-EEEEEECCCCceEEE------ecccccc
Confidence 63222110 01111 1234588888877766666666688 999996443221111 111111
Q ss_pred eeeecCCCccEEEEccCceEEEEeCCCCEEEEeCCCCCCccCCCCCCccccEEecccCCCcE--EEEEecCCeEEEEeeC
Q 016940 252 EQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKA--IHVATGDYTTFVVSED 329 (380)
Q Consensus 252 ~~~~~~~~~i~~i~~G~~h~~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i--~~i~~G~~~t~~l~~~ 329 (380)
.........|..++-..+...+++.+|.|+.|-......+.. +.. ....| +.+...+...+....+
T Consensus 1172 ~~~~~~~~~v~~l~fs~dg~~l~s~~g~v~vwd~~~g~~~~~-----------~~~-~~~~i~~~~~s~dg~~l~~~~~d 1239 (1249)
T 3sfz_A 1172 EGTATHGGWVTDVCFSPDSKTLVSAGGYLKWWNVATGDSSQT-----------FYT-NGTNLKKIHVSPDFRTYVTVDNL 1239 (1249)
T ss_dssp -----CCSCCCEEEECTTSSCEEEESSSEEEBCSSSCBCCCC-----------CCC-SSCCCCCCEECSSSCCEEEECTT
T ss_pred ccccccCceEEEEEECCCCCEEEECCCeEEEEECCCCceeee-----------eec-cCCcccEEEECCCCCEEEEecCC
Confidence 011112334555555444444444458888886543221110 000 01112 2233344455566778
Q ss_pred CCEEEEEC
Q 016940 330 GDVYSFGC 337 (380)
Q Consensus 330 g~v~~wG~ 337 (380)
|.|+.|--
T Consensus 1240 g~v~vw~l 1247 (1249)
T 3sfz_A 1240 GILYILQV 1247 (1249)
T ss_dssp CCEEEECC
T ss_pred cEEEEEee
Confidence 99999853
No 46
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=83.61 E-value=40 Score=34.04 Aligned_cols=200 Identities=13% Similarity=-0.008 Sum_probs=99.5
Q ss_pred eceEEecCC--CeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeC----CCceEEEecCCcEE
Q 016940 44 ENSQAIAGP--GHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAG----AGRTMLISDAGQVY 117 (380)
Q Consensus 44 ~i~~i~~G~--~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g----~~~~~~lt~~G~vy 117 (380)
.|..++... ...+.-..||.|..|-.... .......+.. ....|..++.. ....+.-..||.|+
T Consensus 11 ~V~~l~~s~dg~~latg~~dg~I~vwd~~~~---------~~~~~~~l~~-h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~ 80 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGE---------THKLIDTLTG-HEGPVWRVDWAHPKFGTILASCSYDGKVL 80 (753)
T ss_dssp CEEEECCCSSSCCEEEEETTTEEEEEEEETT---------EEEEEEEECC-CSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred eeEEEEECCCCCeEEEEECCCcEEEEecCCC---------CCccceeccC-CcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence 344454433 33445567899999853210 0111112221 12368888865 33455556789999
Q ss_pred EeeCCCCCCCccCCCCceeecCCeeecccCCccEEEEeeCC----CeEEEEecCCcEEEEEeCCCCccCCCCCCCccccc
Q 016940 118 AFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGN----FFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPH 193 (380)
Q Consensus 118 ~~G~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~----~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~ 193 (380)
.|-.... + ..+..........|..++... ...+.-+.+|.|..|-...... ....
T Consensus 81 vwd~~~~-~-----------~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~---------~~~~ 139 (753)
T 3jro_A 81 IWKEENG-R-----------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT---------TSPI 139 (753)
T ss_dssp EEEEETT-E-----------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC---------CCCE
T ss_pred EEECCCC-c-----------ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC---------ccee
Confidence 9964321 0 001111111233466666653 3555667889999885433110 0011
Q ss_pred ccccccCCCCEEEEEecC-------------CceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCc
Q 016940 194 PLLGTLENIPVVQIAAGY-------------CYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQ 260 (380)
Q Consensus 194 ~v~~~~~~~~i~~i~~g~-------------~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~ 260 (380)
.+. .....|..++... +...+++...|| .|+.|-..... .....+..+......
T Consensus 140 ~~~--~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg-~I~iwd~~~~~----------~~~~~~~~~~~h~~~ 206 (753)
T 3jro_A 140 IID--AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN-LVKIWKYNSDA----------QTYVLESTLEGHSDW 206 (753)
T ss_dssp EEE--CCSSCEEEEEECCCC---------CGGGCCEEEEETTS-CEEEEEEETTT----------TEEEEEEEECCCSSC
T ss_pred Eee--cCCCceEEEEecCcccccccccccCCCCCEEEEEECCC-eEEEEeccCCc----------ccceeeeeecCCCCc
Confidence 111 2233466666654 233344444588 89998543210 111222222333445
Q ss_pred cEEEEcc-----CceEEEEeCCCCEEEEeCCC
Q 016940 261 PVVVAAG-----AWHAAVVGQDGRVCTWGWGR 287 (380)
Q Consensus 261 i~~i~~G-----~~h~~~lt~~g~vy~wG~n~ 287 (380)
|..++.. ....+.-..+|.|+.|-...
T Consensus 207 V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 207 VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp EEEEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred EEEEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence 6666554 34556667889999997644
No 47
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=83.56 E-value=25 Score=31.74 Aligned_cols=226 Identities=12% Similarity=0.073 Sum_probs=116.4
Q ss_pred cEEEE--EeCCCceEEEecCCcEEEeeCCCCCCCccCCCCceeecCCeeecccCCccEEEEeeCC-----CeEEEEecCC
Q 016940 96 RIIQA--AAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGN-----FFTAVLSREG 168 (380)
Q Consensus 96 ~I~~V--~~g~~~~~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~-----~~~~~lt~~G 168 (380)
.+..+ +....+.+++|+.|++|..-...--..+.. ..-.+....++..++.+|+.+.... ...+++|++|
T Consensus 43 ~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~---~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G 119 (327)
T 3uc1_A 43 IVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRT---ARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNG 119 (327)
T ss_dssp CEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSS---SCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTS
T ss_pred EEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCcc---CCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCC
Confidence 45544 455666788999999999875433222111 1111111223333567788876654 4678889999
Q ss_pred cEEEEEeCCCCccCCCCCCCcccccccccccCCCCEEEE--EecCCceEEEEEeCCCCEEEEEecC--CCCccCCCCCCC
Q 016940 169 RVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQI--AAGYCYLLALACQPSGMAVYSVGCG--LGGKLGHGSRTD 244 (380)
Q Consensus 169 ~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i--~~g~~~~~~l~~~~~G~~vy~~G~n--~~gqlg~~~~~~ 244 (380)
.+.-.-...+.... .....-+.. ..+..++.+ +.+..+.+++++ +| ++|.+-.. .--..|.....
T Consensus 120 ~iKr~~l~~~~~~~------r~G~~~i~l-ke~D~lv~~~~~~~~d~ill~T~--~G-~~~rf~~~~~eip~~gr~a~G- 188 (327)
T 3uc1_A 120 LVKKSKLTDFDSNR------SGGIVAVNL-RDNDELVGAVLCSAGDDLLLVSA--NG-QSIRFSATDEALRPMGRATSG- 188 (327)
T ss_dssp EEEEEEGGGGCCCC------SSCEESCBC-CTTCCEEEEEEECTTCEEEEEET--TS-EEEEEECCTTTSCCCCTTSBC-
T ss_pred EEEEeEHHHhhccc------cCceEEEEE-CCCCEEEEEEEecCCCEEEEEEC--CC-eEEEEECcccccCcCCcCCCC-
Confidence 88855433322110 000111111 223345443 334556777776 88 99988766 44333432221
Q ss_pred CCCCeeeeeeecCCCccEEEEcc--CceEEEEeCCCCEEEEeCCCCCCccCCCCCCccccEEecccC--CCcEEEE--Ee
Q 016940 245 EKHPRLIEQFQLLNLQPVVVAAG--AWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALN--DVKAIHV--AT 318 (380)
Q Consensus 245 ~~~p~~~~~~~~~~~~i~~i~~G--~~h~~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~p~~i~~~~--~~~i~~i--~~ 318 (380)
..+..+. .+.+|+.+..- ..+.+.+|++|.+--.-..++...+.+.. -...-.+. +..++.+ ..
T Consensus 189 ----v~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~-----G~~~~~l~~~~d~lv~~~~~~ 258 (327)
T 3uc1_A 189 ----VQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGK-----GVLTVMYDRRRGRLVGALIVD 258 (327)
T ss_dssp ----EESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSC-----CEESSCCCTTTCSEEEEEEEC
T ss_pred ----eeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCC-----cEEEEEecCCCCeEEEEEEeC
Confidence 1111221 34466665543 23677888888776654444332211110 11111111 1223333 34
Q ss_pred cCCeEEEEeeCCCEEEEECCCCCCCCC
Q 016940 319 GDYTTFVVSEDGDVYSFGCGESASLGH 345 (380)
Q Consensus 319 G~~~t~~l~~~g~v~~wG~n~~gqlG~ 345 (380)
+....++++++|++..+-..+--.+|.
T Consensus 259 ~~~~i~l~T~~G~~ir~~~~~i~~~gR 285 (327)
T 3uc1_A 259 DDSELYAVTSGGGVIRTAARQVRKAGR 285 (327)
T ss_dssp TTCEEEEEEGGGCEEEEEGGGSCBCCT
T ss_pred CCccEEEEcCCCeEEEEehhhccccCC
Confidence 667889999999999885544444443
No 48
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=83.32 E-value=21 Score=30.60 Aligned_cols=17 Identities=6% Similarity=0.012 Sum_probs=11.6
Q ss_pred eEEEEeCCCCEEEEeCC
Q 016940 270 HAAVVGQDGRVCTWGWG 286 (380)
Q Consensus 270 h~~~lt~~g~vy~wG~n 286 (380)
..++++.+|++|+-...
T Consensus 210 ~~i~~d~~G~l~v~~~~ 226 (286)
T 1q7f_A 210 IGVGINSNGEILIADNH 226 (286)
T ss_dssp EEEEECTTCCEEEEECS
T ss_pred cEEEECCCCCEEEEeCC
Confidence 45677777888776643
No 49
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=83.06 E-value=24 Score=31.18 Aligned_cols=242 Identities=12% Similarity=-0.035 Sum_probs=117.0
Q ss_pred eceEEecCCC--eEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeC----CCceEEEecCCcEE
Q 016940 44 ENSQAIAGPG--HSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAG----AGRTMLISDAGQVY 117 (380)
Q Consensus 44 ~i~~i~~G~~--~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g----~~~~~~lt~~G~vy 117 (380)
.|..++...+ ..+.-..||.|..|-... ........+.. ....|..++.. ....+.-..||.|.
T Consensus 13 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~---------~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCSSDKTIKIFEVEG---------ETHKLIDTLTG-HEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEEEET---------TEEEEEEEECC-CSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEecCC---------CcceeeeEecC-CCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 4555554433 334445688888885321 00111112221 22368888765 34455556789999
Q ss_pred EeeCCCCCCCccCCCCceeecCCeeecccCCccEEEEeeCCC----eEEEEecCCcEEEEEeCCCCccCCCCCCCccccc
Q 016940 118 AFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNF----FTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPH 193 (380)
Q Consensus 118 ~~G~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~----~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~ 193 (380)
.|-.... + ..+..........|..++...+ ..+....+|.|..|-...... ..+.
T Consensus 83 iwd~~~~-~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~---------~~~~ 141 (379)
T 3jrp_A 83 IWKEENG-R-----------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT---------TSPI 141 (379)
T ss_dssp EEEEETT-E-----------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC---------CCEE
T ss_pred EEEcCCC-c-----------eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc---------eeeE
Confidence 8854321 0 0011111112234666665533 455667888898885433110 0111
Q ss_pred ccccccCCCCEEEEEecC-------------CceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCc
Q 016940 194 PLLGTLENIPVVQIAAGY-------------CYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQ 260 (380)
Q Consensus 194 ~v~~~~~~~~i~~i~~g~-------------~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~ 260 (380)
.+. .....|..++... +...+++...|| .|+.|-..... .....+..+......
T Consensus 142 ~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~----------~~~~~~~~~~~h~~~ 208 (379)
T 3jrp_A 142 IID--AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN-LVKIWKYNSDA----------QTYVLESTLEGHSDW 208 (379)
T ss_dssp EEE--CCTTCEEEEEECCCC----------CTTCEEEEEETTS-CEEEEEEETTT----------TEEEEEEEECCCSSC
T ss_pred Eec--CCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCC-eEEEEEecCCC----------cceeeEEEEecccCc
Confidence 111 2234477776665 234444444588 89998532210 111122222223345
Q ss_pred cEEEEcc-----CceEEEEeCCCCEEEEeCCCCCCccCCCCCCccccEEeccc--CCCcEEEEEecCC--eEEEEeeCCC
Q 016940 261 PVVVAAG-----AWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQAL--NDVKAIHVATGDY--TTFVVSEDGD 331 (380)
Q Consensus 261 i~~i~~G-----~~h~~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~p~~i~~~--~~~~i~~i~~G~~--~t~~l~~~g~ 331 (380)
|..++-. ....+....+|.|+.|-...... .....+... ....|..++.... ..+.-..||.
T Consensus 209 v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~---------~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~ 279 (379)
T 3jrp_A 209 VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG---------PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK 279 (379)
T ss_dssp EEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS---------CCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSS
T ss_pred EeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCc---------cceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCc
Confidence 5565544 34556667889999997544110 001111111 1224555554333 3444457899
Q ss_pred EEEEECC
Q 016940 332 VYSFGCG 338 (380)
Q Consensus 332 v~~wG~n 338 (380)
|+.|=.+
T Consensus 280 i~iw~~~ 286 (379)
T 3jrp_A 280 VTLWKEN 286 (379)
T ss_dssp EEEEEEE
T ss_pred EEEEeCC
Confidence 9999644
No 50
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=82.96 E-value=23 Score=30.82 Aligned_cols=16 Identities=25% Similarity=0.243 Sum_probs=11.6
Q ss_pred ceEEEEeCCCCEEEEeC
Q 016940 269 WHAAVVGQDGRVCTWGW 285 (380)
Q Consensus 269 ~h~~~lt~~g~vy~wG~ 285 (380)
.|++++. +++||..|-
T Consensus 246 ~~~~~~~-~~~i~v~GG 261 (301)
T 2vpj_A 246 YVGATVL-RGRLYAIAG 261 (301)
T ss_dssp SCEEEEE-TTEEEEECC
T ss_pred ceeEEEE-CCEEEEEcC
Confidence 4555554 789999985
No 51
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=82.89 E-value=25 Score=31.13 Aligned_cols=202 Identities=11% Similarity=0.017 Sum_probs=101.3
Q ss_pred eceEEecC----CCeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeCCC----ceEEEecCCc
Q 016940 44 ENSQAIAG----PGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAG----RTMLISDAGQ 115 (380)
Q Consensus 44 ~i~~i~~G----~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g~~----~~~~lt~~G~ 115 (380)
.|..++-. ....+....||.|..|-.... ...+..........|..++.... ..+....+|.
T Consensus 57 ~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~ 126 (379)
T 3jrp_A 57 PVWRVDWAHPKFGTILASCSYDGKVLIWKEENG----------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK 126 (379)
T ss_dssp CEEEEEECCGGGCSEEEEEETTSCEEEEEEETT----------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSE
T ss_pred cEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCC----------ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCc
Confidence 56666643 445556667888888853321 11111111112336888877644 4555578889
Q ss_pred EEEeeCCCCCCCccCCCCceeecCCeeecccCCccEEEEeeCC---------------CeEEEEecCCcEEEEEeCCCCc
Q 016940 116 VYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGN---------------FFTAVLSREGRVYTFSWGNDAR 180 (380)
Q Consensus 116 vy~~G~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~---------------~~~~~lt~~G~vy~~G~n~~gq 180 (380)
|..|-....... .+..+. .....|..++... ...++-..+|.|+.|-......
T Consensus 127 i~v~d~~~~~~~-----------~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 194 (379)
T 3jrp_A 127 VSVVEFKENGTT-----------SPIIID-AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ 194 (379)
T ss_dssp EEEEECCTTSCC-----------CEEEEE-CCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTT
T ss_pred EEEEecCCCCce-----------eeEEec-CCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCc
Confidence 998865432111 011111 1122355555433 3455567788999884432110
Q ss_pred cCCCCCCCcccccccccccCCCCEEEEEecCC---ceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecC
Q 016940 181 LGHHTEPNDVEPHPLLGTLENIPVVQIAAGYC---YLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLL 257 (380)
Q Consensus 181 lg~~~~~~~~~p~~v~~~~~~~~i~~i~~g~~---~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~ 257 (380)
...+.. ........|..++.... ..++++...|| .|+.|-...... .....+......
T Consensus 195 --------~~~~~~-~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg-~i~iwd~~~~~~---------~~~~~~~~~~~~ 255 (379)
T 3jrp_A 195 --------TYVLES-TLEGHSDWVRDVAWSPTVLLRSYLASVSQDR-TCIIWTQDNEQG---------PWKKTLLKEEKF 255 (379)
T ss_dssp --------EEEEEE-EECCCSSCEEEEEECCCCSSSEEEEEEETTS-CEEEEEESSTTS---------CCEEEESSSSCC
T ss_pred --------ceeeEE-EEecccCcEeEEEECCCCCCCCeEEEEeCCC-EEEEEeCCCCCc---------cceeeeeccccC
Confidence 000110 11122345888888776 56666666688 999996433110 001111111112
Q ss_pred CCccEEEEc--cCceEEEEeCCCCEEEEeCC
Q 016940 258 NLQPVVVAA--GAWHAAVVGQDGRVCTWGWG 286 (380)
Q Consensus 258 ~~~i~~i~~--G~~h~~~lt~~g~vy~wG~n 286 (380)
...+..++. -....++-..+|.|+.|-.+
T Consensus 256 ~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 256 PDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp SSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred CCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 224444443 33345555688999999754
No 52
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=82.88 E-value=25 Score=31.13 Aligned_cols=252 Identities=10% Similarity=-0.073 Sum_probs=114.2
Q ss_pred eceEEecCCC--eEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeCCC--ceEEEecCCcEEEe
Q 016940 44 ENSQAIAGPG--HSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAG--RTMLISDAGQVYAF 119 (380)
Q Consensus 44 ~i~~i~~G~~--~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g~~--~~~~lt~~G~vy~~ 119 (380)
+|..++...+ ..++-..||.|+.|-.... .......+.. ....|..++.... ..+.-..||.|+.|
T Consensus 10 ~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~---------~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~~dg~i~vw 79 (372)
T 1k8k_C 10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGN---------KWVQVHELKE-HNGQVTGVDWAPDSNRIVTCGTDRNAYVW 79 (372)
T ss_dssp CCCEEEECTTSSEEEEECSSSEEEEEEEETT---------EEEEEEEEEC-CSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEeCCCC---------cEEeeeeecC-CCCcccEEEEeCCCCEEEEEcCCCeEEEE
Confidence 4555544433 3333346788888853211 0001111211 2235777765433 33444567888888
Q ss_pred eCCCCCCCccCCCCceeecCCeeecccCCccEEEEeeCC--CeEEEEecCCcEEEEEeCCCCccCCCCCCCccccccccc
Q 016940 120 GKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGN--FFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLG 197 (380)
Q Consensus 120 G~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~--~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~ 197 (380)
-... ++ ..+..........|..++... ...++-..+|.|+.|-...... ......+..
T Consensus 80 d~~~-~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~--------~~~~~~~~~ 139 (372)
T 1k8k_C 80 TLKG-RT-----------WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND--------WWVCKHIKK 139 (372)
T ss_dssp EEET-TE-----------EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT--------EEEEEEECT
T ss_pred ECCC-Ce-----------eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCc--------ceeeeeeec
Confidence 5421 11 001110011123366665543 3444556788888775443210 000111111
Q ss_pred ccCCCCEEEEEecCCceEEEEEeCCCCEEEEEecCCCCccCCCCC----CCCCCCeeeeeeecCCCccEEEEcc--CceE
Q 016940 198 TLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSR----TDEKHPRLIEQFQLLNLQPVVVAAG--AWHA 271 (380)
Q Consensus 198 ~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~----~~~~~p~~~~~~~~~~~~i~~i~~G--~~h~ 271 (380)
.....|..++...+...+++...+| .|+.|-......-..... ........+..+......+..++.. ..+.
T Consensus 140 -~~~~~i~~~~~~~~~~~l~~~~~dg-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 217 (372)
T 1k8k_C 140 -PIRSTVLSLDWHPNSVLLAAGSCDF-KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRV 217 (372)
T ss_dssp -TCCSCEEEEEECTTSSEEEEEETTS-CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEE
T ss_pred -ccCCCeeEEEEcCCCCEEEEEcCCC-CEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEE
Confidence 1234588888776655555555688 999996432110000000 0011122233332233345555443 3355
Q ss_pred EEEeCCCCEEEEeCCCCCCccCCCCCCccccEEecccCCCcEEEEEec-CCeEEEEeeCCCEEEEECCC
Q 016940 272 AVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATG-DYTTFVVSEDGDVYSFGCGE 339 (380)
Q Consensus 272 ~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G-~~~t~~l~~~g~v~~wG~n~ 339 (380)
+....+|.|+.|-..... ....+. .....|..++.. +...++...+|.|+.|-...
T Consensus 218 ~~~~~d~~i~i~d~~~~~-----------~~~~~~-~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~ 274 (372)
T 1k8k_C 218 AWVSHDSTVCLADADKKM-----------AVATLA-SETLPLLAVTFITESSLVAAGHDCFPVLFTYDS 274 (372)
T ss_dssp EEEETTTEEEEEEGGGTT-----------EEEEEE-CSSCCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred EEEeCCCEEEEEECCCCc-----------eeEEEc-cCCCCeEEEEEecCCCEEEEEeCCeEEEEEccC
Confidence 556677888888653311 111121 112244444433 23344555788888886543
No 53
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=81.69 E-value=29 Score=31.15 Aligned_cols=69 Identities=16% Similarity=0.053 Sum_probs=42.2
Q ss_pred CCEEEEEecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEcc---CceEEEEeCCC
Q 016940 202 IPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAG---AWHAAVVGQDG 278 (380)
Q Consensus 202 ~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G---~~h~~~lt~~g 278 (380)
..|..++...+...+++...|| .|..|-.+. ...+..+......|..|+.. ....+.-..+|
T Consensus 140 ~~V~~v~~spdg~~l~sgs~dg-~v~iwd~~~--------------~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg 204 (357)
T 4g56_B 140 DIVKTLSVFSDGTQAVSGGKDF-SVKVWDLSQ--------------KAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDG 204 (357)
T ss_dssp SCEEEEEECSSSSEEEEEETTS-CEEEEETTT--------------TEEEEEECCCSSCEEEEEECTTCSSCEEEEETTS
T ss_pred CCEEEEEECCCCCEEEEEeCCC-eEEEEECCC--------------CcEEEEEcCCCCCEEEEEEccCCCceeeeeccCC
Confidence 4588888777766666666688 999994321 23333333334456666542 23445567889
Q ss_pred CEEEEeC
Q 016940 279 RVCTWGW 285 (380)
Q Consensus 279 ~vy~wG~ 285 (380)
.|..|-.
T Consensus 205 ~v~~wd~ 211 (357)
T 4g56_B 205 RILLWDT 211 (357)
T ss_dssp CEEECCT
T ss_pred ceEEEEC
Confidence 9999954
No 54
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=79.82 E-value=16 Score=32.07 Aligned_cols=17 Identities=6% Similarity=-0.328 Sum_probs=12.1
Q ss_pred ceEEEEeCCCCEEEEeCC
Q 016940 269 WHAAVVGQDGRVCTWGWG 286 (380)
Q Consensus 269 ~h~~~lt~~g~vy~wG~n 286 (380)
.|++++. +++||++|-.
T Consensus 240 ~~~~~~~-~~~i~v~GG~ 256 (306)
T 3ii7_A 240 TVKCAAV-GSIVYVLAGF 256 (306)
T ss_dssp CCEEEEE-TTEEEEEECB
T ss_pred ceeEEEE-CCEEEEEeCc
Confidence 4555555 7899999863
No 55
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=77.68 E-value=33 Score=29.33 Aligned_cols=219 Identities=10% Similarity=-0.039 Sum_probs=106.2
Q ss_pred eEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeCC--CceEEEecCCcEEEeeCCCCCCCccCC
Q 016940 54 HSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGA--GRTMLISDAGQVYAFGKDSFGEAEYGV 131 (380)
Q Consensus 54 ~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g~--~~~~~lt~~G~vy~~G~n~~gqlG~~~ 131 (380)
..+....||.|..|-.... .....+.. ....|..++... ...+.-..+|.+..|-......
T Consensus 31 ~l~s~~~dg~v~vw~~~~~-----------~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~----- 93 (313)
T 3odt_A 31 KVASVSRDGTVRLWSKDDQ-----------WLGTVVYT-GQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSG----- 93 (313)
T ss_dssp EEEEEETTSEEEEEEESSS-----------EEEEEEEE-CSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTT-----
T ss_pred EEEEEEcCCcEEEEECCCC-----------EEEEEeec-CCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCC-----
Confidence 4555578899999964211 11111111 122566665443 3344446677777775432110
Q ss_pred CCceeecCCeeecccCCccEEEEeeCCCeEEEEecCCcEEEEEeCCCCccCCCCCCCcccccccccccCCCCEEEEEecC
Q 016940 132 QGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGY 211 (380)
Q Consensus 132 ~~~~~~~~p~~v~~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i~~g~ 211 (380)
..+..........|..++......+.-..+|.|+.|- . ..+.... .....++..++...
T Consensus 94 ------~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~------------~~~~~~~-~~~~~~v~~~~~~~ 152 (313)
T 3odt_A 94 ------EDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--E------------GSLVYNL-QAHNASVWDAKVVS 152 (313)
T ss_dssp ------SCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--T------------TEEEEEE-ECCSSCEEEEEEEE
T ss_pred ------CCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--C------------CcEEEec-ccCCCceeEEEEcc
Confidence 0011111112344777777666777778899999883 0 0011111 12234466665532
Q ss_pred -CceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeec-CCCccEEEEcc-CceEEEEeCCCCEEEEeCCCC
Q 016940 212 -CYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQL-LNLQPVVVAAG-AWHAAVVGQDGRVCTWGWGRY 288 (380)
Q Consensus 212 -~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~-~~~~i~~i~~G-~~h~~~lt~~g~vy~wG~n~~ 288 (380)
....+++...+| .|+.|-.. ..+..+.. ....+..++.. ....++-..+|.|+.|-....
T Consensus 153 ~~~~~l~~~~~d~-~i~i~d~~----------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~ 215 (313)
T 3odt_A 153 FSENKFLTASADK-TIKLWQND----------------KVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTG 215 (313)
T ss_dssp TTTTEEEEEETTS-CEEEEETT----------------EEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTC
T ss_pred CCCCEEEEEECCC-CEEEEecC----------------ceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCch
Confidence 233333333478 89998411 11111111 22234343332 122666778899999976431
Q ss_pred CCccCCCCCCccccEEecccCCCcEEEEEecCC-eEEEEeeCCCEEEEECCC
Q 016940 289 GCLGHGNEECESVPKVVQALNDVKAIHVATGDY-TTFVVSEDGDVYSFGCGE 339 (380)
Q Consensus 289 gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~~-~t~~l~~~g~v~~wG~n~ 339 (380)
.. ...+. .....|..++.... ..++-..+|.|+.|-...
T Consensus 216 ~~-----------~~~~~-~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~ 255 (313)
T 3odt_A 216 DV-----------LRTYE-GHESFVYCIKLLPNGDIVSCGEDRTVRIWSKEN 255 (313)
T ss_dssp CE-----------EEEEE-CCSSCEEEEEECTTSCEEEEETTSEEEEECTTT
T ss_pred hh-----------hhhhh-cCCceEEEEEEecCCCEEEEecCCEEEEEECCC
Confidence 11 11121 12234555554433 444455688888886443
No 56
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=77.25 E-value=40 Score=30.09 Aligned_cols=216 Identities=10% Similarity=-0.017 Sum_probs=101.0
Q ss_pred CCcEEEEEeCC-C--ceEEEecCCcEEEeeCCCCCCCccCCCCceeecCCeeecccCCccEEEEeeCC---CeEEEEecC
Q 016940 94 GIRIIQAAAGA-G--RTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGN---FFTAVLSRE 167 (380)
Q Consensus 94 ~~~I~~V~~g~-~--~~~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~---~~~~~lt~~ 167 (380)
...|..++... . ..+.-..||.|..|-............ ......+..........|..++... ...+.-..+
T Consensus 43 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 121 (408)
T 4a11_B 43 GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTC-KAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFD 121 (408)
T ss_dssp SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEE-CEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETT
T ss_pred CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEec-cccccccccccccCCCcEEEEEEccCCCcEEEEEeCC
Confidence 34788888765 3 334445789999997643322111000 0000000000011234477777543 355566778
Q ss_pred CcEEEEEeCCCCccCCCCCCCcccccccccccCCCCEEEEEecCC---ceEEEEEeCCCCEEEEEecCCCCccCCCCCCC
Q 016940 168 GRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYC---YLLALACQPSGMAVYSVGCGLGGKLGHGSRTD 244 (380)
Q Consensus 168 G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i~~g~~---~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~ 244 (380)
|.|..|-..... +.... .....+..++.... ..++++...+| .|+.|-....
T Consensus 122 ~~i~iwd~~~~~------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~d~~~~---------- 176 (408)
T 4a11_B 122 KTLKVWDTNTLQ------------TADVF--NFEETVYSHHMSPVSTKHCLVAVGTRGP-KVQLCDLKSG---------- 176 (408)
T ss_dssp SEEEEEETTTTE------------EEEEE--ECSSCEEEEEECSSCSSCCEEEEEESSS-SEEEEESSSS----------
T ss_pred CeEEEeeCCCCc------------cceec--cCCCceeeeEeecCCCCCcEEEEEcCCC-eEEEEeCCCc----------
Confidence 999988433210 11111 12233555555442 22444444578 8999954321
Q ss_pred CCCCeeeeeeecCCCccEEEEccCc--e-EEEEeCCCCEEEEeCCCCCC-ccCCC---CCCccccEEecccCCCcEEEEE
Q 016940 245 EKHPRLIEQFQLLNLQPVVVAAGAW--H-AAVVGQDGRVCTWGWGRYGC-LGHGN---EECESVPKVVQALNDVKAIHVA 317 (380)
Q Consensus 245 ~~~p~~~~~~~~~~~~i~~i~~G~~--h-~~~lt~~g~vy~wG~n~~gq-LG~~~---~~~~~~p~~i~~~~~~~i~~i~ 317 (380)
..+..+......|..++.... + .+.-..+|.|+.|-...... +-.-. ......+..........|..++
T Consensus 177 ----~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 252 (408)
T 4a11_B 177 ----SCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLC 252 (408)
T ss_dssp ----CCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEE
T ss_pred ----ceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEE
Confidence 111122223334555544332 2 45567889999997654221 10000 0000000000011223466665
Q ss_pred ecC--CeEEEEeeCCCEEEEECCC
Q 016940 318 TGD--YTTFVVSEDGDVYSFGCGE 339 (380)
Q Consensus 318 ~G~--~~t~~l~~~g~v~~wG~n~ 339 (380)
... .+.+....||.|..|-...
T Consensus 253 ~~~~~~~l~~~~~dg~i~vwd~~~ 276 (408)
T 4a11_B 253 FTSDGLHLLTVGTDNRMRLWNSSN 276 (408)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTT
T ss_pred EcCCCCEEEEecCCCeEEEEECCC
Confidence 543 3455555789999997654
No 57
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=77.04 E-value=45 Score=30.66 Aligned_cols=205 Identities=9% Similarity=0.004 Sum_probs=95.2
Q ss_pred eEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeCC---CceEEEecCCcEEEeeCCCCCCCccC
Q 016940 54 HSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGA---GRTMLISDAGQVYAFGKDSFGEAEYG 130 (380)
Q Consensus 54 ~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g~---~~~~~lt~~G~vy~~G~n~~gqlG~~ 130 (380)
..+.-..||.|..|-.+...... ....+..........|..|+... ...+....+|.|+.|-.......
T Consensus 196 ~l~s~~~dg~i~vwd~~~~~~~~-----~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~--- 267 (430)
T 2xyi_A 196 YLLSASDDHTICLWDINATPKEH-----RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS--- 267 (430)
T ss_dssp EEEEECTTSCEEEEETTSCCBGG-----GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS---
T ss_pred eEEEEeCCCeEEEEeCCCCCCCC-----ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC---
Confidence 34444567778877655321110 00111111111233688887754 23334457899999976532110
Q ss_pred CCCceeecCCeeecccCCccEEEEeeCCC--e-EEEEecCCcEEEEEeCCCCccCCCCCCCcccccccccccCCCCEEEE
Q 016940 131 VQGTKLVTSPQLVESLKNIFVVQAAIGNF--F-TAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQI 207 (380)
Q Consensus 131 ~~~~~~~~~p~~v~~~~~~~i~~i~~g~~--~-~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i 207 (380)
.+..........|..++...+ + .+.-..+|.|..|-.....+ +..... .....|..+
T Consensus 268 --------~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~-----------~~~~~~-~h~~~v~~i 327 (430)
T 2xyi_A 268 --------KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL-----------KLHSFE-SHKDEIFQV 327 (430)
T ss_dssp --------SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-----------CSEEEE-CCSSCEEEE
T ss_pred --------cceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC-----------CeEEee-cCCCCEEEE
Confidence 011111112234666665432 2 33446678888885432111 111111 223458888
Q ss_pred EecCCc-eEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEccCc---eEEEEeCCCCEEEE
Q 016940 208 AAGYCY-LLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAW---HAAVVGQDGRVCTW 283 (380)
Q Consensus 208 ~~g~~~-~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~---h~~~lt~~g~vy~w 283 (380)
+..... .++++...|| .|..|-....+............|..+.........|..++-... ..+....+|.|..|
T Consensus 328 ~~sp~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw 406 (430)
T 2xyi_A 328 QWSPHNETILASSGTDR-RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 406 (430)
T ss_dssp EECSSCTTEEEEEETTS-CCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEE
T ss_pred EECCCCCCEEEEEeCCC-cEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEe
Confidence 877654 3444544578 999996543221100000000012233222223334555554333 44556677888888
Q ss_pred eCCC
Q 016940 284 GWGR 287 (380)
Q Consensus 284 G~n~ 287 (380)
-...
T Consensus 407 ~~~~ 410 (430)
T 2xyi_A 407 QMAE 410 (430)
T ss_dssp EECH
T ss_pred Eccc
Confidence 6543
No 58
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=76.78 E-value=43 Score=30.25 Aligned_cols=72 Identities=11% Similarity=-0.102 Sum_probs=39.8
Q ss_pred CCEEEEEecCCce-EEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeec-CCCccEEEEccCce-EEEEeCCC
Q 016940 202 IPVVQIAAGYCYL-LALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQL-LNLQPVVVAAGAWH-AAVVGQDG 278 (380)
Q Consensus 202 ~~i~~i~~g~~~~-~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~-~~~~i~~i~~G~~h-~~~lt~~g 278 (380)
..|..++...... ++++...|| .|+.|-..... .|. ..+.. ....+..+...... .+.-..+|
T Consensus 291 ~~v~~~~~~~~~~~~l~~g~~dg-~i~vwd~~~~~-----------~~~--~~~~~~~~~~v~~~~~~~~~~l~s~~~d~ 356 (420)
T 3vl1_A 291 CSCNSLTVDGNNANYIYAGYENG-MLAQWDLRSPE-----------CPV--GEFLINEGTPINNVYFAAGALFVSSGFDT 356 (420)
T ss_dssp SCEEEEEECSSCTTEEEEEETTS-EEEEEETTCTT-----------SCS--EEEEESTTSCEEEEEEETTEEEEEETTTE
T ss_pred CCceeEEEeCCCCCEEEEEeCCC-eEEEEEcCCCc-----------Cch--hhhhccCCCCceEEEeCCCCEEEEecCCc
Confidence 4588888876654 555555688 99999533211 111 11111 23344455444333 33445678
Q ss_pred CEEEEeCCC
Q 016940 279 RVCTWGWGR 287 (380)
Q Consensus 279 ~vy~wG~n~ 287 (380)
.|+.|-...
T Consensus 357 ~v~iw~~~~ 365 (420)
T 3vl1_A 357 SIKLDIISD 365 (420)
T ss_dssp EEEEEEECC
T ss_pred cEEEEeccC
Confidence 899997544
No 59
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=75.82 E-value=44 Score=29.92 Aligned_cols=191 Identities=10% Similarity=-0.078 Sum_probs=92.1
Q ss_pred cEEEEEeCCCceEEE--ecCCcEEEeeCCCCCCCccCCCCceeecCCeeecccCCccEEEEeeCC---CeEEEEecCCcE
Q 016940 96 RIIQAAAGAGRTMLI--SDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGN---FFTAVLSREGRV 170 (380)
Q Consensus 96 ~I~~V~~g~~~~~~l--t~~G~vy~~G~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~---~~~~~lt~~G~v 170 (380)
.|..|+.......++ ..||.|..|-.+.. ++ ...+. .....|..++... ...+.-..+|.|
T Consensus 141 ~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~-~~------------~~~~~-~h~~~v~~v~~s~~~~~~~~s~~~dg~v 206 (357)
T 4g56_B 141 IVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK-AV------------LKSYN-AHSSEVNCVAACPGKDTIFLSCGEDGRI 206 (357)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEETTTT-EE------------EEEEC-CCSSCEEEEEECTTCSSCEEEEETTSCE
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEECCCC-cE------------EEEEc-CCCCCEEEEEEccCCCceeeeeccCCce
Confidence 577777665543333 57888888854321 10 00111 1123466666532 234455678888
Q ss_pred EEEEeCCCCccCCCCCCCcccccccccccCCCCEEEEEecCC-ceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCe
Q 016940 171 YTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYC-YLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPR 249 (380)
Q Consensus 171 y~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i~~g~~-~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~ 249 (380)
..|-.... .....+........+..++.... ..++.+...|+ .|+.|-... +.
T Consensus 207 ~~wd~~~~-----------~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~-~i~~wd~~~--------------~~ 260 (357)
T 4g56_B 207 LLWDTRKP-----------KPATRIDFCASDTIPTSVTWHPEKDDTFACGDETG-NVSLVNIKN--------------PD 260 (357)
T ss_dssp EECCTTSS-----------SCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSS-CEEEEESSC--------------GG
T ss_pred EEEECCCC-----------ceeeeeeeccccccccchhhhhcccceEEEeeccc-ceeEEECCC--------------Cc
Confidence 87721110 00111111123344777776533 22333333477 899984321 12
Q ss_pred eeeeeecCCCccEEEEcc---CceEEEEeCCCCEEEEeCCCCCCccCCCCCCccccEEecccCCCcEEEEEecC--CeEE
Q 016940 250 LIEQFQLLNLQPVVVAAG---AWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGD--YTTF 324 (380)
Q Consensus 250 ~~~~~~~~~~~i~~i~~G---~~h~~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~--~~t~ 324 (380)
.+..+......|..++.. ....+.-..||.|+.|-... ++ ...... ....|..|+... ...+
T Consensus 261 ~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~-~~-----------~~~~~~-H~~~V~~vafsP~d~~~l 327 (357)
T 4g56_B 261 SAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF-SE-----------VFRDLS-HRDFVTGVAWSPLDHSKF 327 (357)
T ss_dssp GCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS-CE-----------EEEECC-CSSCEEEEEECSSSTTEE
T ss_pred EeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC-Cc-----------EeEECC-CCCCEEEEEEeCCCCCEE
Confidence 222233334456666543 23344456889999994322 11 111111 123577776542 2222
Q ss_pred -EEeeCCCEEEEECCC
Q 016940 325 -VVSEDGDVYSFGCGE 339 (380)
Q Consensus 325 -~l~~~g~v~~wG~n~ 339 (380)
.-..||+|+.|=-..
T Consensus 328 ~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 328 TTVGWDHKVLHHHLPS 343 (357)
T ss_dssp EEEETTSCEEEEECC-
T ss_pred EEEcCCCeEEEEECCC
Confidence 234689999996443
No 60
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=75.69 E-value=39 Score=29.28 Aligned_cols=17 Identities=12% Similarity=0.022 Sum_probs=11.9
Q ss_pred ceEEEEeCCCCEEEEeCC
Q 016940 269 WHAAVVGQDGRVCTWGWG 286 (380)
Q Consensus 269 ~h~~~lt~~g~vy~wG~n 286 (380)
.|++++. ++++|.+|-.
T Consensus 244 ~~~~~~~-~~~i~v~GG~ 260 (302)
T 2xn4_A 244 NAGVCAV-NGLLYVVGGD 260 (302)
T ss_dssp SCEEEEE-TTEEEEECCB
T ss_pred cCeEEEE-CCEEEEECCc
Confidence 4555554 7899999864
No 61
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=75.29 E-value=45 Score=29.73 Aligned_cols=254 Identities=8% Similarity=-0.048 Sum_probs=119.9
Q ss_pred eceEEec---CCCeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeCCC-----ceEEEecCCc
Q 016940 44 ENSQAIA---GPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAG-----RTMLISDAGQ 115 (380)
Q Consensus 44 ~i~~i~~---G~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g~~-----~~~~lt~~G~ 115 (380)
.|..++. +....+....||.|..|-..... ....+. ....+..+..... ..++-..+|.
T Consensus 101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-----------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (408)
T 4a11_B 101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ-----------TADVFN--FEETVYSHHMSPVSTKHCLVAVGTRGPK 167 (408)
T ss_dssp CEEEEEECTTCTTCEEEEETTSEEEEEETTTTE-----------EEEEEE--CSSCEEEEEECSSCSSCCEEEEEESSSS
T ss_pred cEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCc-----------cceecc--CCCceeeeEeecCCCCCcEEEEEcCCCe
Confidence 4555554 33455666778889988643211 111111 1224555544332 3455567889
Q ss_pred EEEeeCCCCCCCccCCCCceeecCCeeecccCCccEEEEeeCCCe---EEEEecCCcEEEEEeCCCC-ccCCCCCCC--c
Q 016940 116 VYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFF---TAVLSREGRVYTFSWGNDA-RLGHHTEPN--D 189 (380)
Q Consensus 116 vy~~G~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~---~~~lt~~G~vy~~G~n~~g-qlg~~~~~~--~ 189 (380)
|+.|-......+ ..+.. ....|..++...+. .+.-..+|.|+.|-..... .+-...... .
T Consensus 168 v~~~d~~~~~~~-------------~~~~~-~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 233 (408)
T 4a11_B 168 VQLCDLKSGSCS-------------HILQG-HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKK 233 (408)
T ss_dssp EEEEESSSSCCC-------------EEECC-CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCS
T ss_pred EEEEeCCCccee-------------eeecC-CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccccc
Confidence 999965321111 11111 12346666654332 4456788999988544322 111000000 0
Q ss_pred ccccccccccCCCCEEEEEecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEccCc
Q 016940 190 VEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAW 269 (380)
Q Consensus 190 ~~p~~v~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~ 269 (380)
..............|..++...+...+++...|| .|+.|-.......-..... ..........+........
T Consensus 234 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 305 (408)
T 4a11_B 234 SQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDN-RMRLWNSSNGENTLVNYGK-------VCNNSKKGLKFTVSCGCSS 305 (408)
T ss_dssp CCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTS-CEEEEETTTCCBCCCCCCC-------CCCCCSSCCCCEECCSSSS
T ss_pred ceeeccccccccCceeEEEEcCCCCEEEEecCCC-eEEEEECCCCccceecccc-------ccccccccceeEEecCCCc
Confidence 0000001112345588888877766566655688 9999975442221110000 0000001112222233344
Q ss_pred eEEEEeCCCCEEEEeCCCCCCccCCCCCCccccEEecccCCCcEEEEEecC--CeEEEEeeCCCEEEEECCCCCCCC
Q 016940 270 HAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGD--YTTFVVSEDGDVYSFGCGESASLG 344 (380)
Q Consensus 270 h~~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~--~~t~~l~~~g~v~~wG~n~~gqlG 344 (380)
..++...++.|+.|-...... ...+.. ....|..++... ...+.-..||.|..|=......+-
T Consensus 306 ~~~~~~~~~~i~v~d~~~~~~-----------~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 370 (408)
T 4a11_B 306 EFVFVPYGSTIAVYTVYSGEQ-----------ITMLKG-HYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVP 370 (408)
T ss_dssp CEEEEEETTEEEEEETTTCCE-----------EEEECC-CSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-----
T ss_pred eEEEEecCCEEEEEECcCCcc-----------eeeecc-CCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccC
Confidence 566667788999997643211 112221 122455555443 334444569999999776555443
No 62
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=74.61 E-value=73 Score=31.85 Aligned_cols=234 Identities=12% Similarity=0.011 Sum_probs=110.9
Q ss_pred eceEEecCCC--eEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeCCC--ceEEEecCCcEEEe
Q 016940 44 ENSQAIAGPG--HSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAG--RTMLISDAGQVYAF 119 (380)
Q Consensus 44 ~i~~i~~G~~--~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g~~--~~~~lt~~G~vy~~ 119 (380)
+|..++-..+ ..++-..+|.|..|-.... .....+.. ....|..++.... ..+.-..+|.|+.|
T Consensus 15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~-----------~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ-----------VEVRSIQV-TETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTT-----------EEEEEEEC-CSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEECCCC-----------ceEEEEec-CCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 4555554443 3444456888888853321 11112221 1225666654433 34555678889888
Q ss_pred eCCCCCCCccCCCCceeecCCeeecccCCccEEEEeeCCC--eEEEEecCCcEEEEEeCCCCccCCCCCCCccccccccc
Q 016940 120 GKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNF--FTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLG 197 (380)
Q Consensus 120 G~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~--~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~ 197 (380)
-......+ ..+.. ....|..++...+ ..+.-..+|.|..|-..... ......
T Consensus 83 ~~~~~~~~-------------~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~-----------~~~~~~- 136 (814)
T 3mkq_A 83 NYNTGEKV-------------VDFEA-HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW-----------ALEQTF- 136 (814)
T ss_dssp ETTTCCEE-------------EEEEC-CSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS-----------EEEEEE-
T ss_pred ECCCCcEE-------------EEEec-CCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc-----------eEEEEE-
Confidence 65422111 01111 1233566655433 34445678888888543210 011111
Q ss_pred ccCCCCEEEEEecC-CceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEc--cCceEEEE
Q 016940 198 TLENIPVVQIAAGY-CYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAA--GAWHAAVV 274 (380)
Q Consensus 198 ~~~~~~i~~i~~g~-~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~--G~~h~~~l 274 (380)
.....+|..++... ....+++...+| .|+.|-.... .....+.............+. .....++-
T Consensus 137 ~~~~~~v~~~~~~p~~~~~l~~~~~dg-~v~vwd~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 204 (814)
T 3mkq_A 137 EGHEHFVMCVAFNPKDPSTFASGCLDR-TVKVWSLGQS-----------TPNFTLTTGQERGVNYVDYYPLPDKPYMITA 204 (814)
T ss_dssp ECCSSCEEEEEEETTEEEEEEEEETTS-EEEEEETTCS-----------SCSEEEECCCTTCCCEEEECCSTTCCEEEEE
T ss_pred cCCCCcEEEEEEEcCCCCEEEEEeCCC-eEEEEECCCC-----------cceeEEecCCCCCEEEEEEEECCCCCEEEEE
Confidence 12234577777665 444444444588 9999953221 111111111111222223333 34455666
Q ss_pred eCCCCEEEEeCCCCCCccCCCCCCccccEEecccCCCcEEEEEecCC--eEEEEeeCCCEEEEECCC
Q 016940 275 GQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDY--TTFVVSEDGDVYSFGCGE 339 (380)
Q Consensus 275 t~~g~vy~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~~--~t~~l~~~g~v~~wG~n~ 339 (380)
..+|.|+.|-.... .....+.. ....|..++.... ..+.-..||.|+.|-...
T Consensus 205 ~~dg~i~~~d~~~~-----------~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~ 259 (814)
T 3mkq_A 205 SDDLTIKIWDYQTK-----------SCVATLEG-HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259 (814)
T ss_dssp CTTSEEEEEETTTT-----------EEEEEEEC-CSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred eCCCEEEEEECCCC-----------cEEEEEcC-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 77888999965321 11222221 1224555544333 333444578898886554
No 63
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=73.45 E-value=80 Score=31.76 Aligned_cols=203 Identities=11% Similarity=0.011 Sum_probs=102.3
Q ss_pred eceEEecC----CCeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeCCC----ceEEEecCCc
Q 016940 44 ENSQAIAG----PGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAG----RTMLISDAGQ 115 (380)
Q Consensus 44 ~i~~i~~G----~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g~~----~~~~lt~~G~ 115 (380)
.|..++.. ....+....||.|+.|-.... ...+..........|..++.... ..+.-+.||.
T Consensus 55 ~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~----------~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~ 124 (753)
T 3jro_A 55 PVWRVDWAHPKFGTILASCSYDGKVLIWKEENG----------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK 124 (753)
T ss_dssp CEEEEEECCTTSCSEEEEEETTSCEEEEEEETT----------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSE
T ss_pred ceEEEEecCCCCCCEEEEEeCCCeEEEEECCCC----------cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCc
Confidence 56666653 345556678888998863321 11111111112336888877643 4555678899
Q ss_pred EEEeeCCCCCCCccCCCCceeecCCeeecccCCccEEEEeeCC---------------CeEEEEecCCcEEEEEeCCCCc
Q 016940 116 VYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGN---------------FFTAVLSREGRVYTFSWGNDAR 180 (380)
Q Consensus 116 vy~~G~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~---------------~~~~~lt~~G~vy~~G~n~~gq 180 (380)
|..|-....... .+..+.. ....|..++... ...+.-..+|.|..|-......
T Consensus 125 I~vwdl~~~~~~-----------~~~~~~~-~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~ 192 (753)
T 3jro_A 125 VSVVEFKENGTT-----------SPIIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ 192 (753)
T ss_dssp EEEEECCSSSCC-----------CCEEEEC-CSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTT
T ss_pred EEEEEeecCCCc-----------ceeEeec-CCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcc
Confidence 999975432111 0111111 112355555432 3455556788888885433110
Q ss_pred cCCCCCCCcccccccccccCCCCEEEEEecCC---ceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecC
Q 016940 181 LGHHTEPNDVEPHPLLGTLENIPVVQIAAGYC---YLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLL 257 (380)
Q Consensus 181 lg~~~~~~~~~p~~v~~~~~~~~i~~i~~g~~---~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~ 257 (380)
...+... ......+|..++.... ...+++...|| .|+.|-.......- ...+......
T Consensus 193 --------~~~~~~~-~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg-~I~iwd~~~~~~~~---------~~~~~~~~~~ 253 (753)
T 3jro_A 193 --------TYVLEST-LEGHSDWVRDVAWSPTVLLRSYLASVSQDR-TCIIWTQDNEQGPW---------KKTLLKEEKF 253 (753)
T ss_dssp --------EEEEEEE-ECCCSSCEEEEEECCCCSSSEEEEEEESSS-CEEEEEESSSSSCC---------BCCBSSSSCC
T ss_pred --------cceeeee-ecCCCCcEEEEEeccCCCCCCEEEEEecCC-EEEEecCCCCCCcc---------eeEEeccCCC
Confidence 0011111 0122455888888876 56666666688 99999654321000 0000000001
Q ss_pred CCccE--EEEccCceEEEEeCCCCEEEEeCCC
Q 016940 258 NLQPV--VVAAGAWHAAVVGQDGRVCTWGWGR 287 (380)
Q Consensus 258 ~~~i~--~i~~G~~h~~~lt~~g~vy~wG~n~ 287 (380)
...+. .+.......+.-..+|.|+.|-.+.
T Consensus 254 ~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 254 PDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp SSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred CCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 11232 3333444555567889999998764
No 64
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=73.08 E-value=51 Score=29.37 Aligned_cols=17 Identities=12% Similarity=0.194 Sum_probs=12.7
Q ss_pred CCeEEEEecCCcEEEEEe
Q 016940 158 NFFTAVLSREGRVYTFSW 175 (380)
Q Consensus 158 ~~~~~~lt~~G~vy~~G~ 175 (380)
..|+++. -+++||++|-
T Consensus 110 ~~~~~~~-~~~~iyv~GG 126 (357)
T 2uvk_A 110 AGHVTFV-HNGKAYVTGG 126 (357)
T ss_dssp SSEEEEE-ETTEEEEEEC
T ss_pred ccceEEE-ECCEEEEEeC
Confidence 3566666 7889999984
No 65
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=72.82 E-value=54 Score=29.52 Aligned_cols=220 Identities=15% Similarity=0.034 Sum_probs=118.5
Q ss_pred EecCCCeEEEEecCCcEEEeeCCCCCCcCCCCCCCccce--eeccCCCCCcEEEEEeCC-----CceEEEecCCcEEEee
Q 016940 48 AIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRP--RPIRSLQGIRIIQAAAGA-----GRTMLISDAGQVYAFG 120 (380)
Q Consensus 48 i~~G~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p--~~v~~~~~~~I~~V~~g~-----~~~~~lt~~G~vy~~G 120 (380)
.+...++.+++|+.|++|..-...--..+. ...-.| ..++...+++|+.+.... ...+++|++|.+--.-
T Consensus 49 ~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r---~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~ 125 (327)
T 3uc1_A 49 VCSTHDLILFFTTQGRVYRAKAYDLPEASR---TARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSK 125 (327)
T ss_dssp EEETTSEEEEEETTSEEEEEEGGGSCBCCS---SSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEE
T ss_pred EeCCCCEEEEEeCCCeEEEEEHHHCcCCCc---cCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeE
Confidence 456777888999999999886443221111 111112 223334577899886654 3578889999887765
Q ss_pred CCCCCCCccCCCCceeecCCe-eecccCCccEEEE--eeCCCeEEEEecCCcEEEEEeC--CCCccCCCCCCCccccccc
Q 016940 121 KDSFGEAEYGVQGTKLVTSPQ-LVESLKNIFVVQA--AIGNFFTAVLSREGRVYTFSWG--NDARLGHHTEPNDVEPHPL 195 (380)
Q Consensus 121 ~n~~gqlG~~~~~~~~~~~p~-~v~~~~~~~i~~i--~~g~~~~~~lt~~G~vy~~G~n--~~gqlg~~~~~~~~~p~~v 195 (380)
..++-... . .-. -+...++..++.+ +.+.++.+++|++|++|.+-.. .-..+|....... .+
T Consensus 126 l~~~~~~~------r---~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~----~i 192 (327)
T 3uc1_A 126 LTDFDSNR------S---GGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQ----GM 192 (327)
T ss_dssp GGGGCCCC------S---SCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEE----SS
T ss_pred HHHhhccc------c---CceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCee----ee
Confidence 44332110 0 001 1111123444443 3466789999999999977665 4333343322211 12
Q ss_pred ccccCCCCEEEEEecCC--ceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEE--EEccCceE
Q 016940 196 LGTLENIPVVQIAAGYC--YLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVV--VAAGAWHA 271 (380)
Q Consensus 196 ~~~~~~~~i~~i~~g~~--~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~--i~~G~~h~ 271 (380)
.. ..+..|+.+..-.. +.+++++ +| .+.-.--..+...+++... .....+...+..++. +..+....
T Consensus 193 ~L-~~~d~Vv~~~~~~~~~~ll~~T~--~G-~~Krt~l~e~~~~~R~~~G-----~~~~~l~~~~d~lv~~~~~~~~~~i 263 (327)
T 3uc1_A 193 RF-NIDDRLLSLNVVREGTYLLVATS--GG-YAKRTAIEEYPVQGRGGKG-----VLTVMYDRRRGRLVGALIVDDDSEL 263 (327)
T ss_dssp CC-CTTCCEEEEEECCTTCEEEEEET--TS-EEEEEEGGGSCBCCTTSCC-----EESSCCCTTTCSEEEEEEECTTCEE
T ss_pred cC-CCCCEEEEEEEECCCCEEEEEeC--CC-cEEEEEHHHccccCcCCCc-----EEEEEecCCCCeEEEEEEeCCCccE
Confidence 21 34566877766543 4555555 88 7665544443322221111 111111111223333 33466789
Q ss_pred EEEeCCCCEEEEeCCCCCCcc
Q 016940 272 AVVGQDGRVCTWGWGRYGCLG 292 (380)
Q Consensus 272 ~~lt~~g~vy~wG~n~~gqLG 292 (380)
+++|++|++..+-.+.....|
T Consensus 264 ~l~T~~G~~ir~~~~~i~~~g 284 (327)
T 3uc1_A 264 YAVTSGGGVIRTAARQVRKAG 284 (327)
T ss_dssp EEEEGGGCEEEEEGGGSCBCC
T ss_pred EEEcCCCeEEEEehhhccccC
Confidence 999999999988766554444
No 66
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=71.89 E-value=56 Score=29.31 Aligned_cols=121 Identities=7% Similarity=0.004 Sum_probs=56.7
Q ss_pred CcEEEEEeCCCce--EEEecCCcEEEeeCCCCCCCccCCCCceeecCCeeecccCCccEEEEeeC---CCeEEEEecCCc
Q 016940 95 IRIIQAAAGAGRT--MLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIG---NFFTAVLSREGR 169 (380)
Q Consensus 95 ~~I~~V~~g~~~~--~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g---~~~~~~lt~~G~ 169 (380)
..|..++...... +.-..+|.|..|-...... +. .. ...+.. ....|..++.. ....+.-..+|.
T Consensus 68 ~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~---~~--~~----~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~dg~ 137 (416)
T 2pm9_A 68 SKFNDLDWSHNNKIIAGALDNGSLELYSTNEANN---AI--NS----MARFSN-HSSSVKTVKFNAKQDNVLASGGNNGE 137 (416)
T ss_dssp SCEEEEEECSSSSCEEEEESSSCEEEECCSSTTS---CC--CE----EEECCC-SSSCCCEEEECSSSTTBEEEECSSSC
T ss_pred CceEEEEECCCCCeEEEEccCCeEEEeecccccc---cc--cc----hhhccC-CccceEEEEEcCCCCCEEEEEcCCCe
Confidence 3688887655443 3335788999986543110 00 00 001111 12235555543 334455567888
Q ss_pred EEEEEeCCCCccCCCCCCCcccccccc-cccCCCCEEEEEecCC-ceEEEEEeCCCCEEEEEec
Q 016940 170 VYTFSWGNDARLGHHTEPNDVEPHPLL-GTLENIPVVQIAAGYC-YLLALACQPSGMAVYSVGC 231 (380)
Q Consensus 170 vy~~G~n~~gqlg~~~~~~~~~p~~v~-~~~~~~~i~~i~~g~~-~~~~l~~~~~G~~vy~~G~ 231 (380)
|+.|-........ ....+..+. .......|..++.... ..++++...+| .|+.|-.
T Consensus 138 v~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~v~iwd~ 195 (416)
T 2pm9_A 138 IFIWDMNKCTESP-----SNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSN-FASIWDL 195 (416)
T ss_dssp EEBCBTTTTSSCT-----TTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSS-CEEEEET
T ss_pred EEEEECCCCcccc-----ccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCC-CEEEEEC
Confidence 8877433211000 000111110 0112334677776655 44455544578 8999953
No 67
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=71.66 E-value=49 Score=28.53 Aligned_cols=190 Identities=12% Similarity=0.073 Sum_probs=93.1
Q ss_pred eceEEecCC--CeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeCCCceEE--EecCCcEEEe
Q 016940 44 ENSQAIAGP--GHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTML--ISDAGQVYAF 119 (380)
Q Consensus 44 ~i~~i~~G~--~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g~~~~~~--lt~~G~vy~~ 119 (380)
+|..++-.. ...+.-..||.|..|...... ....+.. ....|..++......++ -..||.|..|
T Consensus 25 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~-----------~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 25 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----------FEKTISG-HKLGISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----------EEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred cEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc-----------cchhhcc-CCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence 444444433 344555678999999743211 1111221 22357777766554333 3568888888
Q ss_pred eCCCCCCCccCCCCceeecCCeeecccCCccEEEEeeCC--CeEEEEecCCcEEEEEeCCCCccCCCCCCCccccccccc
Q 016940 120 GKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGN--FFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLG 197 (380)
Q Consensus 120 G~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~--~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~ 197 (380)
-......+ ..+.. ....|..++... ...+.-..+|.|..|-..... ....+.
T Consensus 93 d~~~~~~~-------------~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-----------~~~~~~- 146 (312)
T 4ery_A 93 DVSSGKCL-------------KTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-----------CLKTLP- 146 (312)
T ss_dssp ETTTCCEE-------------EEEEC-CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC-----------EEEEEC-
T ss_pred ECCCCcEE-------------EEEcC-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE-----------EEEEec-
Confidence 64321100 01111 112344444333 234444678888877422110 001111
Q ss_pred ccCCCCEEEEEecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeee-ecCCCccE--EEEccCceEEEE
Q 016940 198 TLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQF-QLLNLQPV--VVAAGAWHAAVV 274 (380)
Q Consensus 198 ~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~-~~~~~~i~--~i~~G~~h~~~l 274 (380)
....+|..++...+...+++...|| .|..|-..... .+..+ ......+. .+..-....++-
T Consensus 147 -~~~~~v~~~~~~~~~~~l~~~~~d~-~i~~wd~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 210 (312)
T 4ery_A 147 -AHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQ--------------CLKTLIDDDNPPVSFVKFSPNGKYILAA 210 (312)
T ss_dssp -CCSSCEEEEEECTTSSEEEEEETTS-CEEEEETTTCC--------------EEEEECCSSCCCEEEEEECTTSSEEEEE
T ss_pred -CCCCcEEEEEEcCCCCEEEEEeCCC-cEEEEECCCCc--------------eeeEEeccCCCceEEEEECCCCCEEEEE
Confidence 2234577777776655666655688 99999532211 11111 11112232 333344456666
Q ss_pred eCCCCEEEEeCCC
Q 016940 275 GQDGRVCTWGWGR 287 (380)
Q Consensus 275 t~~g~vy~wG~n~ 287 (380)
+.+|.|+.|-...
T Consensus 211 ~~d~~i~iwd~~~ 223 (312)
T 4ery_A 211 TLDNTLKLWDYSK 223 (312)
T ss_dssp ETTTEEEEEETTT
T ss_pred cCCCeEEEEECCC
Confidence 7888999997543
No 68
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=70.93 E-value=53 Score=28.69 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=14.3
Q ss_pred CCCeEEEEecCCcEEEeeC
Q 016940 51 GPGHSIAVTSKGVVYSFGS 69 (380)
Q Consensus 51 G~~~~~~l~~~G~v~~~G~ 69 (380)
.+.+..+...+++||++|-
T Consensus 35 ~r~~~~~~~~~~~iyv~GG 53 (315)
T 4asc_A 35 PKNHVSLVTKENQVFVAGG 53 (315)
T ss_dssp CSSEEEEECTTCCEEEEEE
T ss_pred CccceEEEEECCEEEEEcC
Confidence 4556666667899999994
No 69
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=70.92 E-value=50 Score=28.35 Aligned_cols=121 Identities=11% Similarity=-0.036 Sum_probs=61.0
Q ss_pred eceEEecC--CCeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeCC----CceEEEecCCcEE
Q 016940 44 ENSQAIAG--PGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGA----GRTMLISDAGQVY 117 (380)
Q Consensus 44 ~i~~i~~G--~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g~----~~~~~lt~~G~vy 117 (380)
.|..++-. ....+.-..||.|..|-..... ........+.. ....|..++... ...+.-..||.|.
T Consensus 13 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-------~~~~~~~~~~~-~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 13 LVHDVVYDFYGRHVATCSSDQHIKVFKLDKDT-------SNWELSDSWRA-HDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEEECSSS-------CCEEEEEEEEC-CSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ceeEEEEcCCCCEEEEeeCCCeEEEEECCCCC-------Ccceecceecc-CCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 34444433 3344555678999999644211 00011111121 233688888754 3445556789999
Q ss_pred EeeCCCCCCCccCCCCceeecCCeeecccCCccEEEEeeCCC----eEEEEecCCcEEEEEeCC
Q 016940 118 AFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNF----FTAVLSREGRVYTFSWGN 177 (380)
Q Consensus 118 ~~G~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~----~~~~lt~~G~vy~~G~n~ 177 (380)
.|-.+......... ...+..........|..++...+ ..+.-..+|.|+.|-...
T Consensus 85 vwd~~~~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 143 (351)
T 3f3f_A 85 LWEEDPDQEECSGR-----RWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALE 143 (351)
T ss_dssp EEEECTTSCTTSSC-----SEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSS
T ss_pred EEecCCCccccccc-----CcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCC
Confidence 99764322111000 00111111112345777776643 455667899999885443
No 70
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=69.83 E-value=55 Score=28.37 Aligned_cols=195 Identities=11% Similarity=-0.065 Sum_probs=93.3
Q ss_pred CeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeC--CC-ceEEEecCCcEEEeeCCCCCCCcc
Q 016940 53 GHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAG--AG-RTMLISDAGQVYAFGKDSFGEAEY 129 (380)
Q Consensus 53 ~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g--~~-~~~~lt~~G~vy~~G~n~~gqlG~ 129 (380)
...+.-..||.|+.|-..... ....+..+. .....|..++.. .. ..+.-..+|.|+.|-....+++
T Consensus 24 ~~l~~~~~d~~v~iw~~~~~~--------~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-- 92 (342)
T 1yfq_A 24 SLLLITSWDGSLTVYKFDIQA--------KNVDLLQSL-RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-- 92 (342)
T ss_dssp TEEEEEETTSEEEEEEEETTT--------TEEEEEEEE-ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE--
T ss_pred CEEEEEcCCCeEEEEEeCCCC--------ccccceeee-ecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce--
Confidence 344555678888888643211 000111111 122356666554 33 4555567888999854111111
Q ss_pred CCCCceeecCCeeecc-cCCccEEEEeeC-CCeEEEEecCCcEEEEEeCCCCccCCCCCCCcccccccccccCCCCEEEE
Q 016940 130 GVQGTKLVTSPQLVES-LKNIFVVQAAIG-NFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQI 207 (380)
Q Consensus 130 ~~~~~~~~~~p~~v~~-~~~~~i~~i~~g-~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i 207 (380)
..+.. .....|..++.. ....+.-..+|.|+.|-...... .. .......+........|..+
T Consensus 93 -----------~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~--~~~~~~~~~~~~~~~~v~~~ 156 (342)
T 1yfq_A 93 -----------QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGD---GV--IAVKNLNSNNTKVKNKIFTM 156 (342)
T ss_dssp -----------EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTT---BC--EEEEESCSSSSSSCCCEEEE
T ss_pred -----------EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEccccccc---cc--ccccCCeeeEEeeCCceEEE
Confidence 11111 012335555543 45556667888899873221000 00 00000001110123458888
Q ss_pred EecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEcc---CceEEEEeCCCCEEEEe
Q 016940 208 AAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAG---AWHAAVVGQDGRVCTWG 284 (380)
Q Consensus 208 ~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G---~~h~~~lt~~g~vy~wG 284 (380)
+......++.. .+| .|+.|-....+. ...... .......+..++.. ....++-..+|.++.|-
T Consensus 157 ~~~~~~l~~~~--~d~-~i~i~d~~~~~~---------~~~~~~--~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~ 222 (342)
T 1yfq_A 157 DTNSSRLIVGM--NNS-QVQWFRLPLCED---------DNGTIE--ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEF 222 (342)
T ss_dssp EECSSEEEEEE--STT-EEEEEESSCCTT---------CCCEEE--ECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEE
T ss_pred EecCCcEEEEe--CCC-eEEEEECCcccc---------ccceee--ecCCCCceeEEEECCCCCCEEEEEecCCcEEEEE
Confidence 88777733333 488 999996432100 001111 11122344555443 34566667888999987
Q ss_pred CCCC
Q 016940 285 WGRY 288 (380)
Q Consensus 285 ~n~~ 288 (380)
....
T Consensus 223 ~~~~ 226 (342)
T 1yfq_A 223 FDDQ 226 (342)
T ss_dssp CCTT
T ss_pred EcCC
Confidence 6553
No 71
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=68.70 E-value=59 Score=28.28 Aligned_cols=203 Identities=10% Similarity=-0.006 Sum_probs=94.5
Q ss_pred CCeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEE------eCCCceEEEecCCcEEEeeCCCCC
Q 016940 52 PGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAA------AGAGRTMLISDAGQVYAFGKDSFG 125 (380)
Q Consensus 52 ~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~------~g~~~~~~lt~~G~vy~~G~n~~g 125 (380)
....+.-..||.|..|-...... ...............+..++ ......+.-..+|.|+.|-....
T Consensus 129 ~~~l~~~~~d~~i~vwd~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~- 200 (357)
T 3i2n_A 129 APEIVTGSRDGTVKVWDPRQKDD-------PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM- 200 (357)
T ss_dssp CCEEEEEETTSCEEEECTTSCSS-------CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTT-
T ss_pred ccEEEEEeCCCeEEEEeCCCCCC-------cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccC-
Confidence 33555556778888885432110 00011111111123566666 23334455567788999865321
Q ss_pred CCccCCCCceeecCCeeecccCCccEEEEeeCC-----CeEEEEecCCcEEEEEeCCCCccCCCCCCCcccccccccccC
Q 016940 126 EAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGN-----FFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLE 200 (380)
Q Consensus 126 qlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~-----~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~ 200 (380)
+ . ...... ...|..++... ...++-..+|.|+.|-......+ ........ ...
T Consensus 201 ~--------~-----~~~~~~-~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------~~~~~~~~--~~~ 258 (357)
T 3i2n_A 201 A--------L-----RWETNI-KNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT------KGFASVSE--KAH 258 (357)
T ss_dssp E--------E-----EEEEEC-SSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT------TEEEEEEE--ECC
T ss_pred c--------e-----eeecCC-CCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc------cceeeecc--CCC
Confidence 1 0 111111 23366666542 44555577888888843321100 00000000 123
Q ss_pred CCCEEEEEecCCce-EEEEEeCCCCEEEEEecCCCCccCCCCCC--C---CCCCeeeeeeecCCCccEEEEccCc--eEE
Q 016940 201 NIPVVQIAAGYCYL-LALACQPSGMAVYSVGCGLGGKLGHGSRT--D---EKHPRLIEQFQLLNLQPVVVAAGAW--HAA 272 (380)
Q Consensus 201 ~~~i~~i~~g~~~~-~~l~~~~~G~~vy~~G~n~~gqlg~~~~~--~---~~~p~~~~~~~~~~~~i~~i~~G~~--h~~ 272 (380)
...|..++...... ++++...|| .|+.|-.......-..... . ......+..+......|..++-..+ ..+
T Consensus 259 ~~~v~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 337 (357)
T 3i2n_A 259 KSTVWQVRHLPQNRELFLTAGGAG-GLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLC 337 (357)
T ss_dssp SSCEEEEEEETTEEEEEEEEETTS-EEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEE
T ss_pred cCCEEEEEECCCCCcEEEEEeCCC-cEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEE
Confidence 44588888777655 566655688 9999975432221100000 0 0011233333334445655554332 232
Q ss_pred -EEeCCCCEEEEeC
Q 016940 273 -VVGQDGRVCTWGW 285 (380)
Q Consensus 273 -~lt~~g~vy~wG~ 285 (380)
.-..+|.|+.|-.
T Consensus 338 ~s~~~d~~i~iw~~ 351 (357)
T 3i2n_A 338 VCSSFDQTVRVLIV 351 (357)
T ss_dssp EEEETTSEEEEEEE
T ss_pred EEecCCCcEEEEEC
Confidence 3466777877754
No 72
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=68.53 E-value=66 Score=28.83 Aligned_cols=235 Identities=11% Similarity=0.029 Sum_probs=119.8
Q ss_pred CCCcEEE--EEeCCCceEEEecCCcEEEeeCCCCCCCccCCCCceeecCCeeecccCCccEEEEeeCC-----CeEEEEe
Q 016940 93 QGIRIIQ--AAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGN-----FFTAVLS 165 (380)
Q Consensus 93 ~~~~I~~--V~~g~~~~~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~-----~~~~~lt 165 (380)
++..+.. ++.+.++.+++|+.|++|.+-..+--..+.. ..-.+....+...++.+|+.+..-. ...+++|
T Consensus 37 e~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~---a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T 113 (323)
T 1wp5_A 37 DTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWK---DLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVT 113 (323)
T ss_dssp TTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTT---SCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEE
T ss_pred CCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCC---CCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEe
Confidence 3445544 4566778899999999999976543332221 1112222223333466677654432 3578889
Q ss_pred cCCcEEEEEeCCCCccCCCCCCCcccccccccccCCCCEEEE--EecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCC
Q 016940 166 REGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQI--AAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRT 243 (380)
Q Consensus 166 ~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i--~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~ 243 (380)
++|.+.-.-...+..... ...-.-+.. ..+..++.+ ..+....+++++ +| .++-+-.+.....|....
T Consensus 114 ~~G~iKrt~l~e~~~~~r-----~~G~~ai~l-~e~d~lv~~~~~~~~~~i~l~T~--~G-~~irf~~~ev~~~gR~a~- 183 (323)
T 1wp5_A 114 RNGMVKKTELKHYKAQRY-----SKPLTGINL-KNDDQVVDVHLTDGMNELFLVTH--NG-YALWFDESEVSIVGVRAA- 183 (323)
T ss_dssp TTSEEEEEEGGGGCCSCC-----SSCEECSCC-CTTCCEEEEEEECSCSEEEEEET--TS-EEEEEEGGGSCBCCSSCC-
T ss_pred CCCeEEEeEHHHhhhccc-----cCceEEEEe-CCCCEEEEEEEeCCCCEEEEEeC--CC-cEEEEEHHHCcccCCCCc-
Confidence 999888554433221110 000000111 122334433 235666777777 88 998887766544444221
Q ss_pred CCCCCeeeeeeecCCCccEEEEc--cCc-eEEEEeCCCCEEEEeCCCCCCccCCCCCCccccEEecccCCCcEEE--EEe
Q 016940 244 DEKHPRLIEQFQLLNLQPVVVAA--GAW-HAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIH--VAT 318 (380)
Q Consensus 244 ~~~~p~~~~~~~~~~~~i~~i~~--G~~-h~~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~--i~~ 318 (380)
......+. .+..|+.+.. ... ..+.+|++|..-..-..++..-+.+... ...+..++. .+..++. +..
T Consensus 184 ----GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kG-v~~~~~~~~-~~~~l~~~~~v~ 256 (323)
T 1wp5_A 184 ----GVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRG-VVILRELKA-NPHRISGFVVAQ 256 (323)
T ss_dssp ----CEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCC-EECSCCCSS-SCCCEEEEEEEC
T ss_pred ----CEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCC-EECeeecCC-CCceEEEEEEeC
Confidence 22222221 2334554432 122 5667777776554444443222221110 111111111 1213432 234
Q ss_pred cCCeEEEEeeCCCEEEEECCCCCCCCCCC
Q 016940 319 GDYTTFVVSEDGDVYSFGCGESASLGHNA 347 (380)
Q Consensus 319 G~~~t~~l~~~g~v~~wG~n~~gqlG~~~ 347 (380)
+.+..++++++|++...--++-...|.+.
T Consensus 257 ~~~~i~~it~~g~~ir~~~~~i~~~~R~t 285 (323)
T 1wp5_A 257 DSDTIYLQTEKSFIETIKVGDIRFSDRYS 285 (323)
T ss_dssp TTCEEEEEETTSCEEEEEGGGSCBCCSSS
T ss_pred CCCeEEEEeCCCeEEEEEhhhcCccCccC
Confidence 67888899999999998877777766653
No 73
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=67.48 E-value=69 Score=28.65 Aligned_cols=72 Identities=10% Similarity=-0.095 Sum_probs=39.2
Q ss_pred CCEEEEEecC-CceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEccC---ceEEEEeCC
Q 016940 202 IPVVQIAAGY-CYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGA---WHAAVVGQD 277 (380)
Q Consensus 202 ~~i~~i~~g~-~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~---~h~~~lt~~ 277 (380)
..|..++... ...++++...|| .|+.|-... ...+..+......|..++... ...+.-..+
T Consensus 263 ~~v~~~~~s~~~~~~l~s~~~dg-~v~~wd~~~--------------~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d 327 (416)
T 2pm9_A 263 KGILSLDWCHQDEHLLLSSGRDN-TVLLWNPES--------------AEQLSQFPARGNWCFKTKFAPEAPDLFACASFD 327 (416)
T ss_dssp SCEEEEEECSSCSSCEEEEESSS-EEEEECSSS--------------CCEEEEEECSSSCCCCEEECTTCTTEEEECCSS
T ss_pred CceeEEEeCCCCCCeEEEEeCCC-CEEEeeCCC--------------CccceeecCCCCceEEEEECCCCCCEEEEEecC
Confidence 4578887754 333444444588 999994321 122222322333444444433 344445567
Q ss_pred CCEEEEeCCCC
Q 016940 278 GRVCTWGWGRY 288 (380)
Q Consensus 278 g~vy~wG~n~~ 288 (380)
|.|..|-....
T Consensus 328 ~~i~iw~~~~~ 338 (416)
T 2pm9_A 328 NKIEVQTLQNL 338 (416)
T ss_dssp SEEEEEESCCC
T ss_pred CcEEEEEccCC
Confidence 88999987553
No 74
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=66.17 E-value=39 Score=26.40 Aligned_cols=107 Identities=15% Similarity=0.039 Sum_probs=55.6
Q ss_pred CccEEEEeeCC-CeEEEEecCCcEEEEEeCCCCccCCCCCCCcccccccccccCCCCEEEEEec-CCceEEEEEeCCCCE
Q 016940 148 NIFVVQAAIGN-FFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAG-YCYLLALACQPSGMA 225 (380)
Q Consensus 148 ~~~i~~i~~g~-~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i~~g-~~~~~~l~~~~~G~~ 225 (380)
..+.+++-|-. .+-+-+..||.|= |... ..+...-.++.. ....++.|.|- ..+-+++. .+| +
T Consensus 29 ~~~~~~LYcr~~g~~LqI~~dG~V~--Gt~~--------~~~~~s~lei~s--v~~G~V~L~g~~sg~yL~mn--~~G-~ 93 (142)
T 3p6j_A 29 GNGEVLLKSTETGQYLRINPDGTVD--GTRD--------RSDTHIQFQISP--EGNGEVLLKSTETGQYLRIN--PDG-T 93 (142)
T ss_dssp STTCEEEEETTTCCEEEECTTSBEE--EECC--------TTCGGGCEEEEE--EETTEEEEEETTTTEEEEEC--TTS-B
T ss_pred cCcEEEEEEeCCCEEEEECCCCCEe--eecC--------CCCCceEEEEEE--ccCCEEEEEEecCCEEEeEC--CCC-C
Confidence 34577888876 5677788899998 3221 111111122221 12237788876 34444444 499 9
Q ss_pred EEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEc-cCceEEEEeCCCCEEE
Q 016940 226 VYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAA-GAWHAAVVGQDGRVCT 282 (380)
Q Consensus 226 vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~-G~~h~~~lt~~g~vy~ 282 (380)
||..-. .........+.. .+.-.+.+.. -..-.+|++++|++|+
T Consensus 94 l~Gs~~----------~t~ecsflEi~~---en~y~v~i~g~~sg~YLamnk~Grlyg 138 (142)
T 3p6j_A 94 VDGTRD----------RSDTHIQFQISP---EGNGEVLLKSTETGQYLRINPDGTVDG 138 (142)
T ss_dssp EEEECC----------TTCGGGCEEEEE---CSTTCEEEEETTTCCEEEECTTSBEEE
T ss_pred Eeeccc----------CCCCceEEEEEe---ecCcEEEEEEecCCEEEEECCCcCCcc
Confidence 996421 011122222222 2222333321 1234899999999986
No 75
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=65.48 E-value=62 Score=27.41 Aligned_cols=17 Identities=6% Similarity=0.077 Sum_probs=10.9
Q ss_pred eEEEEecCCcEEEEEeC
Q 016940 160 FTAVLSREGRVYTFSWG 176 (380)
Q Consensus 160 ~~~~lt~~G~vy~~G~n 176 (380)
..++++.+|++|+....
T Consensus 210 ~~i~~d~~G~l~v~~~~ 226 (286)
T 1q7f_A 210 IGVGINSNGEILIADNH 226 (286)
T ss_dssp EEEEECTTCCEEEEECS
T ss_pred cEEEECCCCCEEEEeCC
Confidence 45667777777766544
No 76
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=65.45 E-value=75 Score=28.32 Aligned_cols=71 Identities=14% Similarity=0.049 Sum_probs=41.0
Q ss_pred CCCEEEEEecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEcc--CceEEEEeCCC
Q 016940 201 NIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAG--AWHAAVVGQDG 278 (380)
Q Consensus 201 ~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G--~~h~~~lt~~g 278 (380)
...|..++..... .+++...+| .|+.|-... ...+..+......+..++.. ....++-..+|
T Consensus 289 ~~~i~~~~~~~~~-~l~~~~~d~-~i~i~d~~~--------------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 352 (425)
T 1r5m_A 289 SQSIVSASWVGDD-KVISCSMDG-SVRLWSLKQ--------------NTLLALSIVDGVPIFAGRISQDGQKYAVAFMDG 352 (425)
T ss_dssp SSCEEEEEEETTT-EEEEEETTS-EEEEEETTT--------------TEEEEEEECTTCCEEEEEECTTSSEEEEEETTS
T ss_pred CccEEEEEECCCC-EEEEEeCCC-cEEEEECCC--------------CcEeEecccCCccEEEEEEcCCCCEEEEEECCC
Confidence 3457777776665 444444588 999995322 12232333233355555443 34555667788
Q ss_pred CEEEEeCCC
Q 016940 279 RVCTWGWGR 287 (380)
Q Consensus 279 ~vy~wG~n~ 287 (380)
.|+.|-...
T Consensus 353 ~i~i~~~~~ 361 (425)
T 1r5m_A 353 QVNVYDLKK 361 (425)
T ss_dssp CEEEEECHH
T ss_pred eEEEEECCC
Confidence 999997643
No 77
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=65.22 E-value=69 Score=27.84 Aligned_cols=193 Identities=11% Similarity=-0.025 Sum_probs=93.6
Q ss_pred eeceEEecCCC-----eEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeCCC--ceEEEecCCc
Q 016940 43 RENSQAIAGPG-----HSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAG--RTMLISDAGQ 115 (380)
Q Consensus 43 ~~i~~i~~G~~-----~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g~~--~~~~lt~~G~ 115 (380)
..|..++.... ..+.-..||.|..|-....+. .....+.. ....|..++.... ..+.-..||.
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~---------~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg~ 109 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---------TIPKAQQM-HTGPVLDVCWSDDGSKVFTASCDKT 109 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC---------EEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSE
T ss_pred CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc---------eeEEEecc-ccCCEEEEEECcCCCEEEEEcCCCc
Confidence 35566666554 334446788898886543211 11112221 2236777776544 3444567888
Q ss_pred EEEeeCCCCCCCccCCCCceeecCCeeecccCCccEEEEee--CCC--eEEEEecCCcEEEEEeCCCCccCCCCCCCccc
Q 016940 116 VYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAI--GNF--FTAVLSREGRVYTFSWGNDARLGHHTEPNDVE 191 (380)
Q Consensus 116 vy~~G~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~--g~~--~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~ 191 (380)
|..|-.... + . ..... ....|..++. ..+ ..+.-..+|.|+.|-....
T Consensus 110 v~iwd~~~~-~---------~----~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~------------- 161 (368)
T 3mmy_A 110 AKMWDLSSN-Q---------A----IQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS------------- 161 (368)
T ss_dssp EEEEETTTT-E---------E----EEEEE-CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS-------------
T ss_pred EEEEEcCCC-C---------c----eeecc-ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC-------------
Confidence 999965321 1 0 01111 2234666664 333 2444466888997732211
Q ss_pred ccccccccCCCCEEEEEecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEccCce-
Q 016940 192 PHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWH- 270 (380)
Q Consensus 192 p~~v~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~h- 270 (380)
..+........+..+.......++... ++ .++.|-....... ...+.........+..+......
T Consensus 162 -~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~i~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 227 (368)
T 3mmy_A 162 -NPMMVLQLPERCYCADVIYPMAVVATA--ER-GLIVYQLENQPSE----------FRRIESPLKHQHRCVAIFKDKQNK 227 (368)
T ss_dssp -SCSEEEECSSCEEEEEEETTEEEEEEG--GG-CEEEEECSSSCEE----------EEECCCSCSSCEEEEEEEECTTSC
T ss_pred -cEEEEEecCCCceEEEecCCeeEEEeC--CC-cEEEEEeccccch----------hhhccccccCCCceEEEcccCCCC
Confidence 011110112235555555555555555 77 8888854321110 00010001111123333333332
Q ss_pred ---EEEEeCCCCEEEEeCCC
Q 016940 271 ---AAVVGQDGRVCTWGWGR 287 (380)
Q Consensus 271 ---~~~lt~~g~vy~wG~n~ 287 (380)
.++-..+|.+..|-...
T Consensus 228 ~~~~~~~~~dg~i~i~~~~~ 247 (368)
T 3mmy_A 228 PTGFALGSIEGRVAIHYINP 247 (368)
T ss_dssp EEEEEEEETTSEEEEEESSC
T ss_pred CCeEEEecCCCcEEEEecCC
Confidence 66677889999997654
No 78
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=63.87 E-value=32 Score=30.12 Aligned_cols=16 Identities=25% Similarity=0.270 Sum_probs=11.7
Q ss_pred ceEEEEeCCCCEEEEeC
Q 016940 269 WHAAVVGQDGRVCTWGW 285 (380)
Q Consensus 269 ~h~~~lt~~g~vy~wG~ 285 (380)
.|++++. +++||++|-
T Consensus 255 ~~~~~~~-~~~i~v~GG 270 (308)
T 1zgk_A 255 ALGITVH-QGRIYVLGG 270 (308)
T ss_dssp SCEEEEE-TTEEEEECC
T ss_pred ceEEEEE-CCEEEEEcC
Confidence 4565554 789999985
No 79
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=61.86 E-value=55 Score=25.54 Aligned_cols=103 Identities=14% Similarity=0.153 Sum_probs=55.3
Q ss_pred eceEEecCC-CeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeC-CCceEEEecCCcEEEeeC
Q 016940 44 ENSQAIAGP-GHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAG-AGRTMLISDAGQVYAFGK 121 (380)
Q Consensus 44 ~i~~i~~G~-~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g-~~~~~~lt~~G~vy~~G~ 121 (380)
+.++.-|-. .+.+-+..||.|=.-....+ .........+. ..++.|.|- ..+.+.+..+|+||.--.
T Consensus 31 ~~~~LYcr~~g~~LqI~~dG~V~Gt~~~~~-------~~s~lei~sv~----~G~V~L~g~~sg~yL~mn~~G~l~Gs~~ 99 (142)
T 3p6j_A 31 GEVLLKSTETGQYLRINPDGTVDGTRDRSD-------THIQFQISPEG----NGEVLLKSTETGQYLRINPDGTVDGTRD 99 (142)
T ss_dssp TCEEEEETTTCCEEEECTTSBEEEECCTTC-------GGGCEEEEEEE----TTEEEEEETTTTEEEEECTTSBEEEECC
T ss_pred cEEEEEEeCCCEEEEECCCCCEeeecCCCC-------CceEEEEEEcc----CCEEEEEEecCCEEEeECCCCCEeeccc
Confidence 444555544 56677788998886532110 01111122211 247788765 467888899999997532
Q ss_pred CCCCCCccCCCCceeecCCeee--cccCCccEEEEeeCCCeEEEEecCCcEE
Q 016940 122 DSFGEAEYGVQGTKLVTSPQLV--ESLKNIFVVQAAIGNFFTAVLSREGRVY 171 (380)
Q Consensus 122 n~~gqlG~~~~~~~~~~~p~~v--~~~~~~~i~~i~~g~~~~~~lt~~G~vy 171 (380)
. ... ....++ +..-...|+.+..| ..++++.+|++|
T Consensus 100 ~-----------t~e-csflEi~~en~y~v~i~g~~sg--~YLamnk~Grly 137 (142)
T 3p6j_A 100 R-----------SDT-HIQFQISPEGNGEVLLKSTETG--QYLRINPDGTVD 137 (142)
T ss_dssp T-----------TCG-GGCEEEEECSTTCEEEEETTTC--CEEEECTTSBEE
T ss_pred C-----------CCC-ceEEEEEeecCcEEEEEEecCC--EEEEECCCcCCc
Confidence 1 011 111121 12222223333344 489999999999
No 80
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=61.05 E-value=77 Score=26.95 Aligned_cols=103 Identities=8% Similarity=-0.055 Sum_probs=56.5
Q ss_pred CCeEEEEecCCcEEEEEeCCCCccCCCCCCCcccccccccccCCCCEEEEEecCCceEEEEEeCCCCEEEEEecCCCCcc
Q 016940 158 NFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKL 237 (380)
Q Consensus 158 ~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gql 237 (380)
.+..+++-.|+.|+.|=... +++ ...+...-....|..++.......+++...|| .|..|-...
T Consensus 35 ~~~~lAvg~D~tV~iWd~~t-g~~----------~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg-~v~iw~~~~---- 98 (318)
T 4ggc_A 35 SGNVLAVALDNSVYLWSASS-GDI----------LQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA-EVQLWDVQQ---- 98 (318)
T ss_dssp TTSEEEEEETTEEEEEETTT-CCE----------EEEEECCSTTCCEEEEEECTTSSEEEEEETTS-EEEEEETTT----
T ss_pred CCCEEEEEeCCEEEEEECCC-CCE----------EEEEEecCCCCeEEEEEECCCCCEEEEEECCC-cEEEeecCC----
Confidence 34466777789999883221 100 01111112234588888887777767666688 999995322
Q ss_pred CCCCCCCCCCCeeeeeeecCCCccEEEEccCceEEEEeCCCCEEEEeCC
Q 016940 238 GHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWG 286 (380)
Q Consensus 238 g~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~vy~wG~n 286 (380)
...+..+......+..++......+.-..++.+..|-..
T Consensus 99 ----------~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~ 137 (318)
T 4ggc_A 99 ----------QKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVR 137 (318)
T ss_dssp ----------TEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETT
T ss_pred ----------ceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecC
Confidence 122333333344455555555555555666667666543
No 81
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=60.70 E-value=92 Score=27.72 Aligned_cols=230 Identities=8% Similarity=-0.071 Sum_probs=107.8
Q ss_pred ceEEecC-CCeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeCCCceEEE--ecCCcEEEeeC
Q 016940 45 NSQAIAG-PGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLI--SDAGQVYAFGK 121 (380)
Q Consensus 45 i~~i~~G-~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g~~~~~~l--t~~G~vy~~G~ 121 (380)
|..++-. ....+.-..||.|..|-...... .........--...|..|+...+...++ ..||.|..|-.
T Consensus 85 v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~--------~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~ 156 (344)
T 4gqb_B 85 VADLTWVGERGILVASDSGAVELWELDENET--------LIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDL 156 (344)
T ss_dssp EEEEEEETTTEEEEEETTSEEEEEEECTTSS--------CEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEEEEEeCCCeEEEEECCCEEEEEeccCCCc--------eeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 4444432 33444556778888885432111 1111111101122577777665544333 46788888854
Q ss_pred CCCCCCccCCCCceeecCCeeeccc--CCccEEEEeeCCC---eEEEEecCCcEEEEEeCCCCccCCCCCCCcccccccc
Q 016940 122 DSFGEAEYGVQGTKLVTSPQLVESL--KNIFVVQAAIGNF---FTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLL 196 (380)
Q Consensus 122 n~~gqlG~~~~~~~~~~~p~~v~~~--~~~~i~~i~~g~~---~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~ 196 (380)
.. + ..+..+ ....|..++...+ ..+.-..||.|..|=..... ....+.
T Consensus 157 ~~-~---------------~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~-----------~~~~~~ 209 (344)
T 4gqb_B 157 AQ-Q---------------VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK-----------PASQIG 209 (344)
T ss_dssp TT-T---------------EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS-----------CEEECC
T ss_pred CC-C---------------cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccc-----------eeeeee
Confidence 32 1 111111 1234666665433 22334568889887322100 011111
Q ss_pred cccCCCCEEEEEecCC-ceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEccC---ceEE
Q 016940 197 GTLENIPVVQIAAGYC-YLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGA---WHAA 272 (380)
Q Consensus 197 ~~~~~~~i~~i~~g~~-~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~---~h~~ 272 (380)
.......+..++.... -.++++...|| .|..|=... ...+..+......|..|+... ...+
T Consensus 210 ~~~~~~~~~~~~~~p~~~~~l~sg~~dg-~v~~wd~~~--------------~~~~~~~~~h~~~v~~v~fsp~g~~~la 274 (344)
T 4gqb_B 210 CSAPGYLPTSLAWHPQQSEVFVFGDENG-TVSLVDTKS--------------TSCVLSSAVHSQCVTGLVFSPHSVPFLA 274 (344)
T ss_dssp ----CCCEEEEEECSSCTTEEEEEETTS-EEEEEESCC----------------CCEEEECCSSCEEEEEECSSSSCCEE
T ss_pred cceeeccceeeeecCCCCcceEEeccCC-cEEEEECCC--------------CcEEEEEcCCCCCEEEEEEccCCCeEEE
Confidence 1122334666665532 22333333488 999994221 112223333444566776532 3344
Q ss_pred EEeCCCCEEEEeCCCCCCccCCCCCCccccEEecccCCCcEEEEEecC-CeEEEE--eeCCCEEEEEC
Q 016940 273 VVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGD-YTTFVV--SEDGDVYSFGC 337 (380)
Q Consensus 273 ~lt~~g~vy~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~-~~t~~l--~~~g~v~~wG~ 337 (380)
.-..||.|+.|-... ++ ...+.. ....|..++-.. ...++. ..||+|..|=-
T Consensus 275 sgs~D~~i~vwd~~~-~~-----------~~~~~~-H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v 329 (344)
T 4gqb_B 275 SLSEDCSLAVLDSSL-SE-----------LFRSQA-HRDFVRDATWSPLNHSLLTTVGWDHQVVHHVV 329 (344)
T ss_dssp EEETTSCEEEECTTC-CE-----------EEEECC-CSSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred EEeCCCeEEEEECCC-Cc-----------EEEEcC-CCCCEEEEEEeCCCCeEEEEEcCCCeEEEEEC
Confidence 467899999995322 11 112221 123577776542 222332 36899999954
No 82
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=59.92 E-value=53 Score=30.41 Aligned_cols=98 Identities=17% Similarity=0.161 Sum_probs=57.5
Q ss_pred EEEEEeCCCceEEEecCCcEEEeeCCCCCCCccCCCCceeecCCeeecccCCccEEEEeeCCCeEEEEecCCcEEEEEeC
Q 016940 97 IIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWG 176 (380)
Q Consensus 97 I~~V~~g~~~~~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n 176 (380)
|.+|++ ....+++..+|.|..|-..+..+. . .+..++ ..+.++.+-....++++.+|.|+.|-..
T Consensus 90 V~~l~f-d~~~L~v~~~~~l~v~dv~sl~~~------~-------~~~~~~-~~v~~i~~~~p~~av~~~dG~L~v~dl~ 154 (388)
T 1xip_A 90 VIFVCF-HGDQVLVSTRNALYSLDLEELSEF------R-------TVTSFE-KPVFQLKNVNNTLVILNSVNDLSALDLR 154 (388)
T ss_dssp EEEEEE-ETTEEEEEESSEEEEEESSSTTCE------E-------EEEECS-SCEEEEEECSSEEEEEETTSEEEEEETT
T ss_pred eeEEEE-CCCEEEEEcCCcEEEEEchhhhcc------C-------ccceee-cceeeEEecCCCEEEEECCCCEEEEEcc
Confidence 899999 777888888899999865443321 0 011111 2245555555557788999999988433
Q ss_pred CCCccCCCCCCCcccccccccccCCCCEEEEEecCCceEEEEEeCCCCEEEEE
Q 016940 177 NDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSV 229 (380)
Q Consensus 177 ~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~ 229 (380)
... + .+ + . ..|..++-...-.++... || ++..|
T Consensus 155 ~~~-~---------~~--~---~--~~Vs~v~WSpkG~~vg~~--dg-~i~~~ 187 (388)
T 1xip_A 155 TKS-T---------KQ--L---A--QNVTSFDVTNSQLAVLLK--DR-SFQSF 187 (388)
T ss_dssp TCC-E---------EE--E---E--ESEEEEEECSSEEEEEET--TS-CEEEE
T ss_pred CCc-c---------cc--c---c--CCceEEEEcCCceEEEEc--CC-cEEEE
Confidence 211 1 00 1 1 237777766666433333 66 66665
No 83
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=59.64 E-value=88 Score=27.15 Aligned_cols=69 Identities=9% Similarity=0.106 Sum_probs=38.8
Q ss_pred cEEEEeeCC--CeEEEEecCCcEEEEEeCCCCccCCCCCCCcccccccccccCCCCEEEEEecCCceEEEEEeCCCCEEE
Q 016940 150 FVVQAAIGN--FFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVY 227 (380)
Q Consensus 150 ~i~~i~~g~--~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy 227 (380)
.+..++... ...++-+.+|.|+.|-.... ..+.... ......|..++...+...+++...+| .|+
T Consensus 177 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----------~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~ 243 (369)
T 3zwl_B 177 AATVAGWSTKGKYIIAGHKDGKISKYDVSNN-----------YEYVDSI-DLHEKSISDMQFSPDLTYFITSSRDT-NSF 243 (369)
T ss_dssp CEEEEEECGGGCEEEEEETTSEEEEEETTTT-----------TEEEEEE-ECCSSCEEEEEECTTSSEEEEEETTS-EEE
T ss_pred ceeEEEEcCCCCEEEEEcCCCEEEEEECCCC-----------cEeEEEE-ecCCCceeEEEECCCCCEEEEecCCc-eEE
Confidence 355554433 34555567888887743221 1111111 12345588888876666666665688 999
Q ss_pred EEec
Q 016940 228 SVGC 231 (380)
Q Consensus 228 ~~G~ 231 (380)
.|-.
T Consensus 244 v~d~ 247 (369)
T 3zwl_B 244 LVDV 247 (369)
T ss_dssp EEET
T ss_pred EEEC
Confidence 9953
No 84
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=59.20 E-value=86 Score=26.94 Aligned_cols=73 Identities=7% Similarity=-0.022 Sum_probs=37.4
Q ss_pred eeceEEecCCC---eEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeCCCceEE--EecCCcEE
Q 016940 43 RENSQAIAGPG---HSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTML--ISDAGQVY 117 (380)
Q Consensus 43 ~~i~~i~~G~~---~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g~~~~~~--lt~~G~vy 117 (380)
..|..|+.... ..+--..||.|..|-..... .....|...-..-...|..++......++ -..||.++
T Consensus 39 ~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~-------~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~ 111 (340)
T 4aow_A 39 GWVTQIATTPQFPDMILSASRDKTIIMWKLTRDE-------TNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLR 111 (340)
T ss_dssp SCEEEEEECTTCTTEEEEEETTSCEEEEEECCSS-------SCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC-------cccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccce
Confidence 35777776543 22334578999999643211 11111221111112367777665544333 35677787
Q ss_pred EeeCC
Q 016940 118 AFGKD 122 (380)
Q Consensus 118 ~~G~n 122 (380)
.|-..
T Consensus 112 ~~~~~ 116 (340)
T 4aow_A 112 LWDLT 116 (340)
T ss_dssp EEETT
T ss_pred EEeec
Confidence 77643
No 85
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=58.39 E-value=1.1e+02 Score=27.67 Aligned_cols=167 Identities=13% Similarity=-0.027 Sum_probs=74.6
Q ss_pred cEEEEEeCC---CceEEEecCCcEEEeeCCCCCCCccCCCCceeecCCeeecccCCccEEEEeeCCC--eEEEEecCCcE
Q 016940 96 RIIQAAAGA---GRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNF--FTAVLSREGRV 170 (380)
Q Consensus 96 ~I~~V~~g~---~~~~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~--~~~~lt~~G~v 170 (380)
.+..++... ...+.-..||.|..|-... +++ ......+.....-....|..++...+ ..+.-..+|.|
T Consensus 208 ~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~-~~~------~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v 280 (393)
T 1erj_A 208 GVTTVAVSPGDGKYIAAGSLDRAVRVWDSET-GFL------VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV 280 (393)
T ss_dssp CEEEEEECSTTCCEEEEEETTSCEEEEETTT-CCE------EEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred CcEEEEEECCCCCEEEEEcCCCcEEEEECCC-CcE------EEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEE
Confidence 466665543 2334445788888885432 111 00000000000111234666665433 34444578888
Q ss_pred EEEEeCCCCccCCCCCCCcccccccccccCCCCEEEEEecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCee
Q 016940 171 YTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRL 250 (380)
Q Consensus 171 y~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~ 250 (380)
..|-................. ......-....|..++...+...+++...|| .|+.|-... ...
T Consensus 281 ~~wd~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~-~v~iwd~~~--------------~~~ 344 (393)
T 1erj_A 281 KLWNLQNANNKSDSKTPNSGT-CEVTYIGHKDFVLSVATTQNDEYILSGSKDR-GVLFWDKKS--------------GNP 344 (393)
T ss_dssp EEEEC---------------C-EEEEEECCSSCEEEEEECGGGCEEEEEETTS-EEEEEETTT--------------CCE
T ss_pred EEEECCCCCCcccccCCCCCc-ceEEEecccCcEEEEEECCCCCEEEEEeCCC-eEEEEECCC--------------CeE
Confidence 888543321111000000000 0001001223477777776666666666688 999995321 112
Q ss_pred eeeeecCCCccEEEEccC--------ceEEEEeCCCCEEEEeC
Q 016940 251 IEQFQLLNLQPVVVAAGA--------WHAAVVGQDGRVCTWGW 285 (380)
Q Consensus 251 ~~~~~~~~~~i~~i~~G~--------~h~~~lt~~g~vy~wG~ 285 (380)
+..+......|..++... ...+.-..||.|..|-.
T Consensus 345 ~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~ 387 (393)
T 1erj_A 345 LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 387 (393)
T ss_dssp EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred EEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcc
Confidence 223333344566665432 23334457788888853
No 86
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=57.53 E-value=99 Score=27.11 Aligned_cols=180 Identities=8% Similarity=-0.055 Sum_probs=0.0
Q ss_pred CCeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeCCCceEEEe--cCCcEEEeeCCCCCCCcc
Q 016940 52 PGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLIS--DAGQVYAFGKDSFGEAEY 129 (380)
Q Consensus 52 ~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g~~~~~~lt--~~G~vy~~G~n~~gqlG~ 129 (380)
....+.-..||.|..| +.........+....+ .|..++......++++ .||.|..|
T Consensus 154 ~~~l~s~s~d~~i~~w-----------d~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~sg~~d~~v~~w---------- 211 (340)
T 1got_B 154 DNQIVTSSGDTTCALW-----------DIETGQQTTTFTGHTG-DVMSLSLAPDTRLFVSGACDASAKLW---------- 211 (340)
T ss_dssp TTEEEEEETTSCEEEE-----------ETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEE----------
T ss_pred CCcEEEEECCCcEEEE-----------ECCCCcEEEEEcCCCC-ceEEEEECCCCCEEEEEeCCCcEEEE----------
Q ss_pred CCCCceeecCCeeecccCCccEEEEeeC--CCeEEEEecCCcEEEEEeCCCCccCCCCCCCcccccccccccCCCCEEEE
Q 016940 130 GVQGTKLVTSPQLVESLKNIFVVQAAIG--NFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQI 207 (380)
Q Consensus 130 ~~~~~~~~~~p~~v~~~~~~~i~~i~~g--~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i 207 (380)
......+..........|..++.. ....+.-..+|.|..| +..................|..+
T Consensus 212 ----d~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iw-----------d~~~~~~~~~~~~~~~~~~v~~~ 276 (340)
T 1got_B 212 ----DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF-----------DLRADQELMTYSHDNIICGITSV 276 (340)
T ss_dssp ----ETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE-----------ETTTTEEEEEECCTTCCSCEEEE
T ss_pred ----ECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEE-----------ECCCCcEEEEEccCCcccceEEE
Q ss_pred EecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEccCc--eEEEEeCCCCEEEE
Q 016940 208 AAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAW--HAAVVGQDGRVCTW 283 (380)
Q Consensus 208 ~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~--h~~~lt~~g~vy~w 283 (380)
+......++++...|| .|+.| +......+..+......|..++...+ ..+.-..||.|+.|
T Consensus 277 ~~s~~g~~l~~g~~d~-~i~vw--------------d~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iW 339 (340)
T 1got_B 277 SFSKSGRLLLAGYDDF-NCNVW--------------DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339 (340)
T ss_dssp EECTTSSEEEEEETTS-EEEEE--------------ETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred EECCCCCEEEEECCCC-eEEEE--------------EcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEec
No 87
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=57.49 E-value=93 Score=26.80 Aligned_cols=152 Identities=9% Similarity=-0.085 Sum_probs=77.2
Q ss_pred eEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccC-CCCCcEEEEEeC-CCceEEEecCCcEEEeeCCCCCCCccCC
Q 016940 54 HSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRS-LQGIRIIQAAAG-AGRTMLISDAGQVYAFGKDSFGEAEYGV 131 (380)
Q Consensus 54 ~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~-~~~~~I~~V~~g-~~~~~~lt~~G~vy~~G~n~~gqlG~~~ 131 (380)
..+.-..||.|+.|-.+..++ ...+.. .....|..++.. ....+.-..||.|+.|-...... .
T Consensus 71 ~l~~~~~dg~i~~wd~~~~~~-----------~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~---~- 135 (342)
T 1yfq_A 71 QIYVGTVQGEILKVDLIGSPS-----------FQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGD---G- 135 (342)
T ss_dssp EEEEEETTSCEEEECSSSSSS-----------EEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTT---B-
T ss_pred EEEEEcCCCeEEEEEeccCCc-----------eEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEccccccc---c-
Confidence 455556677777775311111 122222 022367777654 44555557788899985431100 0
Q ss_pred CCceeecCCeeecccCCccEEEEeeCCCeEEEEecCCcEEEEEeCCCCccCCCCCCCcccccccccccCCCCEEEEEecC
Q 016940 132 QGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGY 211 (380)
Q Consensus 132 ~~~~~~~~p~~v~~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i~~g~ 211 (380)
.......+..... ....|..++...+..++-+.+|.|+.|-....+. ........ .....+..++...
T Consensus 136 -~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---------~~~~~~~~-~~~~~i~~i~~~~ 203 (342)
T 1yfq_A 136 -VIAVKNLNSNNTK-VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCED---------DNGTIEES-GLKYQIRDVALLP 203 (342)
T ss_dssp -CEEEEESCSSSSS-SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTT---------CCCEEEEC-SCSSCEEEEEECS
T ss_pred -cccccCCeeeEEe-eCCceEEEEecCCcEEEEeCCCeEEEEECCcccc---------ccceeeec-CCCCceeEEEECC
Confidence 0000011111111 2345777887777777778899999885432110 00111111 2234578887776
Q ss_pred -CceEEEEEeCCCCEEEEEecCC
Q 016940 212 -CYLLALACQPSGMAVYSVGCGL 233 (380)
Q Consensus 212 -~~~~~l~~~~~G~~vy~~G~n~ 233 (380)
....+++...+| .|..|-.+.
T Consensus 204 ~~~~~l~~~~~dg-~i~i~~~~~ 225 (342)
T 1yfq_A 204 KEQEGYACSSIDG-RVAVEFFDD 225 (342)
T ss_dssp GGGCEEEEEETTS-EEEEEECCT
T ss_pred CCCCEEEEEecCC-cEEEEEEcC
Confidence 544555555588 999986543
No 88
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=57.19 E-value=92 Score=26.65 Aligned_cols=189 Identities=12% Similarity=0.042 Sum_probs=88.2
Q ss_pred cEEEEEeCCCce--EEEecCCcEEEeeCCCCCCCccCCCCceeecCCeeecccCCccEEEEeeCCC--eEEEEecCCcEE
Q 016940 96 RIIQAAAGAGRT--MLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNF--FTAVLSREGRVY 171 (380)
Q Consensus 96 ~I~~V~~g~~~~--~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~--~~~~lt~~G~vy 171 (380)
.|..++...... +.-..||.|..|-.... + .. ..+. .....|..++...+ ..+.-..+|.|.
T Consensus 109 ~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~--------~~----~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 174 (312)
T 4ery_A 109 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTG-K--------CL----KTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCR 174 (312)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEETTTC-C--------EE----EEEC-CCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-E--------EE----EEec-CCCCcEEEEEEcCCCCEEEEEeCCCcEE
Confidence 466665554433 33356788888854321 1 00 0111 11233555554332 344456788888
Q ss_pred EEEeCCCCccCCCCCCCcccccccccccCCCCEEEEEecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeee
Q 016940 172 TFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLI 251 (380)
Q Consensus 172 ~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~ 251 (380)
.|-..... ....+. .....++..++...+...+++...|| .|..|-.... ..+
T Consensus 175 ~wd~~~~~-----------~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~--------------~~~ 227 (312)
T 4ery_A 175 IWDTASGQ-----------CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDN-TLKLWDYSKG--------------KCL 227 (312)
T ss_dssp EEETTTCC-----------EEEEEC-CSSCCCEEEEEECTTSSEEEEEETTT-EEEEEETTTT--------------EEE
T ss_pred EEECCCCc-----------eeeEEe-ccCCCceEEEEECCCCCEEEEEcCCC-eEEEEECCCC--------------cEE
Confidence 77432110 001111 12233466666665555555555588 9999954321 111
Q ss_pred eeeecCCC---cc-EEEE-ccCceEEEEeCCCCEEEEeCCCCCCccCCCCCCccccEEecccCCCcEEEEEecCCeEEEE
Q 016940 252 EQFQLLNL---QP-VVVA-AGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVV 326 (380)
Q Consensus 252 ~~~~~~~~---~i-~~i~-~G~~h~~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~t~~l 326 (380)
..+..... .+ .... .+....+.-..+|.|+.|-..... ....+.. ....|..++.-.....+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~-----------~~~~~~~-h~~~v~~~~~~p~~~~l~ 295 (312)
T 4ery_A 228 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE-----------IVQKLQG-HTDVVISTACHPTENIIA 295 (312)
T ss_dssp EEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCC-----------EEEEECC-CSSCEEEEEECSSSSEEE
T ss_pred EEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCch-----------hhhhhhc-cCCcEEEEeecCcCCceE
Confidence 11111000 01 1111 223344455678999999754311 1112221 123566666655444443
Q ss_pred e----eCCCEEEEEC
Q 016940 327 S----EDGDVYSFGC 337 (380)
Q Consensus 327 ~----~~g~v~~wG~ 337 (380)
+ .|+.|..|-.
T Consensus 296 s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 296 SAALENDKTIKLWKS 310 (312)
T ss_dssp EEECTTTCCEEEEEC
T ss_pred EEEccCCccEEEecC
Confidence 3 4788888854
No 89
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=56.28 E-value=42 Score=33.29 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=14.9
Q ss_pred CceEEEEeCCCCEEEEeC
Q 016940 268 AWHAAVVGQDGRVCTWGW 285 (380)
Q Consensus 268 ~~h~~~lt~~g~vy~wG~ 285 (380)
..|++++..+|+||++|-
T Consensus 288 ~~~s~~~~~dg~iyv~GG 305 (656)
T 1k3i_A 288 GYQSSATMSDGRVFTIGG 305 (656)
T ss_dssp SSCEEEECTTSCEEEECC
T ss_pred cccceEEecCCeEEEEeC
Confidence 357888877999999996
No 90
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=53.73 E-value=1.2e+02 Score=26.90 Aligned_cols=110 Identities=15% Similarity=0.089 Sum_probs=54.9
Q ss_pred CCEEEEEecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEccCc-eEEEEeCCCCE
Q 016940 202 IPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAW-HAAVVGQDGRV 280 (380)
Q Consensus 202 ~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~-h~~~lt~~g~v 280 (380)
..|..++.......+++...+| .|+.|-.... ..+..+......+..++...+ ..++...+|.|
T Consensus 248 ~~i~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~--------------~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i 312 (425)
T 1r5m_A 248 GPISVLEFNDTNKLLLSASDDG-TLRIWHGGNG--------------NSQNCFYGHSQSIVSASWVGDDKVISCSMDGSV 312 (425)
T ss_dssp SCEEEEEEETTTTEEEEEETTS-CEEEECSSSB--------------SCSEEECCCSSCEEEEEEETTTEEEEEETTSEE
T ss_pred CceEEEEECCCCCEEEEEcCCC-EEEEEECCCC--------------ccceEecCCCccEEEEEECCCCEEEEEeCCCcE
Confidence 4466666655444444444567 7888742211 111112222334545444322 56666788889
Q ss_pred EEEeCCCCCCccCCCCCCccccEEecccCCCcEEEEEec--CCeEEEEeeCCCEEEEECC
Q 016940 281 CTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATG--DYTTFVVSEDGDVYSFGCG 338 (380)
Q Consensus 281 y~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G--~~~t~~l~~~g~v~~wG~n 338 (380)
+.|-..... ....+. .....+..++.. ....++-..+|.|+.|-..
T Consensus 313 ~i~d~~~~~-----------~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~ 360 (425)
T 1r5m_A 313 RLWSLKQNT-----------LLALSI-VDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLK 360 (425)
T ss_dssp EEEETTTTE-----------EEEEEE-CTTCCEEEEEECTTSSEEEEEETTSCEEEEECH
T ss_pred EEEECCCCc-----------EeEecc-cCCccEEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence 999753311 111111 122345555544 3344444568899999644
No 91
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=52.24 E-value=1.2e+02 Score=26.44 Aligned_cols=108 Identities=13% Similarity=0.107 Sum_probs=57.6
Q ss_pred CCEEEEEecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEc--cCceEEEEeCCCC
Q 016940 202 IPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAA--GAWHAAVVGQDGR 279 (380)
Q Consensus 202 ~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~--G~~h~~~lt~~g~ 279 (380)
.+|..++...+..++++...|| .|..|-.... ..+..+......|..++- -..+.+.-..+|.
T Consensus 207 ~~v~~l~~spd~~~l~s~s~dg-~i~iwd~~~~--------------~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~ 271 (321)
T 3ow8_A 207 MPIRSLTFSPDSQLLVTASDDG-YIKIYDVQHA--------------NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKS 271 (321)
T ss_dssp SCCCEEEECTTSCEEEEECTTS-CEEEEETTTC--------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CceeEEEEcCCCCEEEEEcCCC-eEEEEECCCc--------------ceeEEEcCCCCceEEEEECCCCCEEEEEeCCCc
Confidence 3467777766666666665688 8999953221 122222223334555543 3345566678899
Q ss_pred EEEEeCCCCCCccCCCCCCccccEEecccCCCcEEEEEecCC--eEEEEeeCCCEEEEE
Q 016940 280 VCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDY--TTFVVSEDGDVYSFG 336 (380)
Q Consensus 280 vy~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~~--~t~~l~~~g~v~~wG 336 (380)
|..|-.... .....+.. ....|..++-... ..+.-..||+|..|-
T Consensus 272 v~iwd~~~~-----------~~~~~~~~-h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 272 VKVWDVGTR-----------TCVHTFFD-HQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp EEEEETTTT-----------EEEEEECC-CSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred EEEEeCCCC-----------EEEEEEcC-CCCcEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 999965331 11111211 1224655554433 333344688888884
No 92
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=52.02 E-value=2.4e+02 Score=29.87 Aligned_cols=62 Identities=10% Similarity=-0.060 Sum_probs=32.9
Q ss_pred EEEccCceEEEEeCCCCEEEEeCCCCCCccCCCCCCccccEEecccCCCcEEEEEecCC--eEEEEeeCCCEEEEE
Q 016940 263 VVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDY--TTFVVSEDGDVYSFG 336 (380)
Q Consensus 263 ~i~~G~~h~~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~~--~t~~l~~~g~v~~wG 336 (380)
.++......++-+.+|.+..|-..... ....+.. ....|..++.... ..+....||.|..|-
T Consensus 847 ~~sp~~~~l~~~~~dg~v~vwd~~~~~-----------~~~~~~~-h~~~v~~v~~spdg~~l~s~s~dg~v~vw~ 910 (1249)
T 3sfz_A 847 DFSPYDHLAVIALSQYCVELWNIDSRL-----------KVADCRG-HLSWVHGVMFSPDGSSFLTASDDQTIRVWE 910 (1249)
T ss_dssp EECSSTTEEEEECSSSCEEEEETTTTE-----------EEEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCc-----------eeeecCC-CccceEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 334444556666778888888654311 1111211 1224555554433 344445688999985
No 93
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=51.19 E-value=2e+02 Score=28.62 Aligned_cols=183 Identities=12% Similarity=-0.027 Sum_probs=88.7
Q ss_pred CeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeCCCc--eEEEecCCcEEEeeCCCCCCCccC
Q 016940 53 GHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGR--TMLISDAGQVYAFGKDSFGEAEYG 130 (380)
Q Consensus 53 ~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g~~~--~~~lt~~G~vy~~G~n~~gqlG~~ 130 (380)
...+....||.|..|-..... ....+.. ....|..++..... .+.-..||.|..|-......+
T Consensus 68 ~~l~~~~~dg~i~vw~~~~~~-----------~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~--- 132 (814)
T 3mkq_A 68 NWIIVGSDDFRIRVFNYNTGE-----------KVVDFEA-HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL--- 132 (814)
T ss_dssp TEEEEEETTSEEEEEETTTCC-----------EEEEEEC-CSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEE---
T ss_pred CEEEEEeCCCeEEEEECCCCc-----------EEEEEec-CCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceE---
Confidence 344555667777777543211 1111111 22357777766554 344456788888854211000
Q ss_pred CCCceeecCCeeecccCCccEEEEeeCC---CeEEEEecCCcEEEEEeCCCCccCCCCCCCcccccccccccCCCCEEEE
Q 016940 131 VQGTKLVTSPQLVESLKNIFVVQAAIGN---FFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQI 207 (380)
Q Consensus 131 ~~~~~~~~~p~~v~~~~~~~i~~i~~g~---~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i 207 (380)
...+. .....|..++... ...+.-..+|.|..|-..... ....+.. .....+..+
T Consensus 133 ---------~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~-----------~~~~~~~-~~~~~v~~~ 190 (814)
T 3mkq_A 133 ---------EQTFE-GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-----------PNFTLTT-GQERGVNYV 190 (814)
T ss_dssp ---------EEEEE-CCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS-----------CSEEEEC-CCTTCCCEE
T ss_pred ---------EEEEc-CCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----------ceeEEec-CCCCCEEEE
Confidence 01111 1123466666543 244445678899988532211 0111111 111234444
Q ss_pred EecC--CceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEcc--CceEEEEeCCCCEEEE
Q 016940 208 AAGY--CYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAG--AWHAAVVGQDGRVCTW 283 (380)
Q Consensus 208 ~~g~--~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G--~~h~~~lt~~g~vy~w 283 (380)
+... ....+++...+| .|+.|-... ...+..+......|..++.. ....+.-..+|.|+.|
T Consensus 191 ~~~~~~~~~~l~~~~~dg-~i~~~d~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vw 255 (814)
T 3mkq_A 191 DYYPLPDKPYMITASDDL-TIKIWDYQT--------------KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255 (814)
T ss_dssp EECCSTTCCEEEEECTTS-EEEEEETTT--------------TEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred EEEECCCCCEEEEEeCCC-EEEEEECCC--------------CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 4433 444444444588 999995321 12233333233345555443 3345666778999999
Q ss_pred eCCC
Q 016940 284 GWGR 287 (380)
Q Consensus 284 G~n~ 287 (380)
-...
T Consensus 256 d~~~ 259 (814)
T 3mkq_A 256 NSST 259 (814)
T ss_dssp ETTT
T ss_pred ECCC
Confidence 7654
No 94
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=51.03 E-value=1.2e+02 Score=26.07 Aligned_cols=124 Identities=14% Similarity=0.139 Sum_probs=70.0
Q ss_pred EecCCCeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeC--CCceEEEecCCcEEEeeCCCCC
Q 016940 48 AIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAG--AGRTMLISDAGQVYAFGKDSFG 125 (380)
Q Consensus 48 i~~G~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g--~~~~~~lt~~G~vy~~G~n~~g 125 (380)
.+...++.+++|+.|++|..-...-- .+...-......++...+++|+.+... ..+.+++|++|.+.-.-..++-
T Consensus 40 ~~~t~~~ll~~T~~Gr~~~~~~~elp---~~r~~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~ 116 (256)
T 1zvt_A 40 KGKSNQPVVFVDSTGRSYAIDPITLP---SARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLV 116 (256)
T ss_dssp EEETTSCEEEEETTSEEEEECGGGSC---CSSSCCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGC
T ss_pred EeCCCCEEEEEeCCCeEEEEEHHHCC---CcCCCCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhc
Confidence 45567789999999999988754321 111000111112333356789988763 3347788999987776654431
Q ss_pred CCccCCCCceeecCCeeeccc-CCccEEEE--e-eCCCeEEEEecCCcEEEEEeCCCCccCC
Q 016940 126 EAEYGVQGTKLVTSPQLVESL-KNIFVVQA--A-IGNFFTAVLSREGRVYTFSWGNDARLGH 183 (380)
Q Consensus 126 qlG~~~~~~~~~~~p~~v~~~-~~~~i~~i--~-~g~~~~~~lt~~G~vy~~G~n~~gqlg~ 183 (380)
....+ . ..+-.+ ++..++.+ . .+.++.+++|++|++.-+-.+....+|.
T Consensus 117 ~~~r~---G------~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~ei~~~gR 169 (256)
T 1zvt_A 117 ARNRA---G------KALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK 169 (256)
T ss_dssp CCSTT---C------EECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEEGGGSCBCSS
T ss_pred ccCcC---c------eEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEEHHHCCCcCc
Confidence 11110 0 011111 12233332 2 3567899999999998777666555554
No 95
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=50.89 E-value=1.3e+02 Score=26.58 Aligned_cols=265 Identities=12% Similarity=0.088 Sum_probs=135.7
Q ss_pred CeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEE--EeCCCceEEEecCCcEEEeeCCCCCCCccC
Q 016940 53 GHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQA--AAGAGRTMLISDAGQVYAFGKDSFGEAEYG 130 (380)
Q Consensus 53 ~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V--~~g~~~~~~lt~~G~vy~~G~n~~gqlG~~ 130 (380)
...+++|++|.+--.-...+.....+. .-...+..-++..+..+ +.+.++.+++|+.|++|.+-...--..+..
T Consensus 9 ~~~v~~T~~G~iKr~~~~~~~~~~~~~----~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 9 NIVVMLTKKGFLKRLSQNEYKLQGTGG----KGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp EEEEEEETTCBEEEEEGGGSCBCCSSC----CCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CEEEEEeCCCEEEEeEHHHhhccccCC----CCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 346788999988765433222111100 01112222244455554 556677899999999999976432222111
Q ss_pred CCCceeecCCeeecccCCccEEEEeeC-----CCeEEEEecCCcEEEEEeCCCCcc-CCCCCCCcccccccccccCCCCE
Q 016940 131 VQGTKLVTSPQLVESLKNIFVVQAAIG-----NFFTAVLSREGRVYTFSWGNDARL-GHHTEPNDVEPHPLLGTLENIPV 204 (380)
Q Consensus 131 ~~~~~~~~~p~~v~~~~~~~i~~i~~g-----~~~~~~lt~~G~vy~~G~n~~gql-g~~~~~~~~~p~~v~~~~~~~~i 204 (380)
..-.+....+...++.+|..+... ..+.+++|++|.++-.-...+... +.+ -.-+.. ..+..+
T Consensus 85 ---~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G-------~~~i~L-~~~d~l 153 (312)
T 1suu_A 85 ---SKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRG-------VIVIKL-NDKDFV 153 (312)
T ss_dssp ------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----C-------EECBCC-CTTCCE
T ss_pred ---CCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCc-------EEEEec-CCCCEE
Confidence 111122223333456677777654 346888999999996654443111 000 000111 224456
Q ss_pred EEEEe--cCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEc--cCceEEEEeCCCCE
Q 016940 205 VQIAA--GYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAA--GAWHAAVVGQDGRV 280 (380)
Q Consensus 205 ~~i~~--g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~--G~~h~~~lt~~g~v 280 (380)
+.+.. +....+++++ +| .+.-+-.+.....|..... .....+. .+..++.+.. ...+.+++|++|.+
T Consensus 154 v~~~~~~~~~~i~l~T~--~G-~~~r~~~~ev~~~gR~~~G-----v~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~ 224 (312)
T 1suu_A 154 TSAEIVFKDEKVICLSK--KG-SAFIFNSRDVRLTNRGTQG-----VCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYG 224 (312)
T ss_dssp EEEEEECTTCEEEEEET--TS-EEEEEEGGGSCBCCTTBCC-----EECCCCC-TTCCEEEEEECTTCSEEEEEETTSEE
T ss_pred EEEEEeCCCCEEEEEeC--CC-cEEEEEHHHccccCCCCCC-----eEeEEeC-CCCEEEEEEEECCCCeEEEEECCCce
Confidence 55544 3455666676 88 8888876655444442221 1111111 1334444432 34567888999988
Q ss_pred EEEeCCCCCCccCCCCCCccccEEeccc---CCCcEEE--EEecCCeEEEEeeCCCEEEEECCCCCCCCCC
Q 016940 281 CTWGWGRYGCLGHGNEECESVPKVVQAL---NDVKAIH--VATGDYTTFVVSEDGDVYSFGCGESASLGHN 346 (380)
Q Consensus 281 y~wG~n~~gqLG~~~~~~~~~p~~i~~~---~~~~i~~--i~~G~~~t~~l~~~g~v~~wG~n~~gqlG~~ 346 (380)
-..-.+++...+.+... ..+..+ .+..++. ........++++++|++...-.++....+.+
T Consensus 225 kr~~~~e~~~~~R~~kG-----v~~~~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~~~i~~~~R~ 290 (312)
T 1suu_A 225 KRLNMSKISELKRGATG-----YTSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVAGKVSEQGKD 290 (312)
T ss_dssp EEEEGGGSCBCCTTCCC-----EECSCTTCTTTCSEEEEEEECTTCEEEEEETTCEEEEEEGGGSCBCCTT
T ss_pred EEEEHHHhcccCCCCCC-----EEeeEccCCCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEcccCCccCcc
Confidence 88777776554433211 111111 1123332 2235666777788887777766655544443
No 96
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=50.43 E-value=1.3e+02 Score=26.53 Aligned_cols=220 Identities=10% Similarity=0.061 Sum_probs=113.9
Q ss_pred CCceEEEecCCcEEEeeCCCCCCCccCCCCceeecCCeeecccCCccEEE--EeeCCCeEEEEecCCcEEEEEeCCCCcc
Q 016940 104 AGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQ--AAIGNFFTAVLSREGRVYTFSWGNDARL 181 (380)
Q Consensus 104 ~~~~~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~--i~~g~~~~~~lt~~G~vy~~G~n~~gql 181 (380)
....+++|.+|.+--.-...+.....+. . -..-+..-++..++. ++.+.++.+++|++|++|..-...-...
T Consensus 8 e~~~v~~T~~G~iKr~~~~~~~~~~~~~--~----g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~ 81 (312)
T 1suu_A 8 ENIVVMLTKKGFLKRLSQNEYKLQGTGG--K----GLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDS 81 (312)
T ss_dssp CEEEEEEETTCBEEEEEGGGSCBCCSSC--C----CEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-
T ss_pred CCEEEEEeCCCEEEEeEHHHhhccccCC--C----CceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCC
Confidence 3457888999988766544332211110 0 000111122333444 4556778999999999997654432222
Q ss_pred CCCCCCCcccccccccccCCCCEEEEEec-----CCceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeec
Q 016940 182 GHHTEPNDVEPHPLLGTLENIPVVQIAAG-----YCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQL 256 (380)
Q Consensus 182 g~~~~~~~~~p~~v~~~~~~~~i~~i~~g-----~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~ 256 (380)
+....... ....+.. ..+..|+.+... ..+.+++++ +| .++-.--..+... .........+..
T Consensus 82 ~r~~~G~~-i~~~l~l-~~~e~i~~~~~~~~~~~~~~ll~~T~--~G-~~kr~~l~~~~~~-------r~~G~~~i~L~~ 149 (312)
T 1suu_A 82 SRASKGQN-ISELINL-GDQEEILTIKNSKDLTDDAYLLLTTA--SG-KIARFESTDFKAV-------KSRGVIVIKLND 149 (312)
T ss_dssp ------CB-GGGTSCC-CTTCCEEEEEEESCCCTTCEEEEEET--TS-EEEEEEGGGGCC-----------CEECBCCCT
T ss_pred CccCCCcC-hhhccCC-CCCCEEEEEEEeccCCCCCEEEEEeC--CC-eEEEEEHHHhhcc-------CCCcEEEEecCC
Confidence 22211110 1112222 345667777654 334666666 88 9888765443111 011112212222
Q ss_pred CCCccEEEE--ccCceEEEEeCCCCEEEEeCCCCCCccCCCCCCccccEEecccCCCcEEEEEe--cCCeEEEEeeCCCE
Q 016940 257 LNLQPVVVA--AGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVAT--GDYTTFVVSEDGDV 332 (380)
Q Consensus 257 ~~~~i~~i~--~G~~h~~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~--G~~~t~~l~~~g~v 332 (380)
+..++.+. .+..+.+++|++|.+..+-.++....|..... -.-+....+..++.+.. ...+.++++++|..
T Consensus 150 -~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~G----v~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~ 224 (312)
T 1suu_A 150 -KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQG----VCGMKLKEGDLFVKVLSVKENPYLLIVSENGYG 224 (312)
T ss_dssp -TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCC----EECCCCCTTCCEEEEEECTTCSEEEEEETTSEE
T ss_pred -CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCC----eEeEEeCCCCEEEEEEEECCCCeEEEEECCCce
Confidence 33454433 45678999999999999887765444332111 11111112345555433 34567788888988
Q ss_pred EEEECCCCCCCCCC
Q 016940 333 YSFGCGESASLGHN 346 (380)
Q Consensus 333 ~~wG~n~~gqlG~~ 346 (380)
...--.++-..+.+
T Consensus 225 kr~~~~e~~~~~R~ 238 (312)
T 1suu_A 225 KRLNMSKISELKRG 238 (312)
T ss_dssp EEEEGGGSCBCCTT
T ss_pred EEEEHHHhcccCCC
Confidence 88877776555553
No 97
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=49.49 E-value=1.6e+02 Score=27.09 Aligned_cols=63 Identities=13% Similarity=0.140 Sum_probs=38.4
Q ss_pred EEEEeeCCCeEEEEecCCcEEEEEeCCCCccCCCCCCCcccccccccccCCCCEEEEEecCCceEEEEEeCCCCEEEEEe
Q 016940 151 VVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVG 230 (380)
Q Consensus 151 i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G 230 (380)
|.++++ ....+++.++|.|..|--....+.. ... ....++.++.+.....++++. || .|+.|=
T Consensus 90 V~~l~f-d~~~L~v~~~~~l~v~dv~sl~~~~-----------~~~--~~~~~v~~i~~~~p~~av~~~--dG-~L~v~d 152 (388)
T 1xip_A 90 VIFVCF-HGDQVLVSTRNALYSLDLEELSEFR-----------TVT--SFEKPVFQLKNVNNTLVILNS--VN-DLSALD 152 (388)
T ss_dssp EEEEEE-ETTEEEEEESSEEEEEESSSTTCEE-----------EEE--ECSSCEEEEEECSSEEEEEET--TS-EEEEEE
T ss_pred eeEEEE-CCCEEEEEcCCcEEEEEchhhhccC-----------ccc--eeecceeeEEecCCCEEEEEC--CC-CEEEEE
Confidence 889999 7777777788888877433322100 111 112235666666554555555 89 999994
No 98
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=48.70 E-value=1.6e+02 Score=26.91 Aligned_cols=116 Identities=9% Similarity=-0.054 Sum_probs=57.1
Q ss_pred CCEEEEEecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEcc-----CceEEEEeC
Q 016940 202 IPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAG-----AWHAAVVGQ 276 (380)
Q Consensus 202 ~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G-----~~h~~~lt~ 276 (380)
..|..++-..+...+++...+| .||.|-........ .+ +..+......|..++.. ....+.-..
T Consensus 150 ~~v~~~~~sp~~~~l~~~~~~g-~v~~~~~~~~~~~~--------~~--~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~ 218 (450)
T 2vdu_B 150 KRPNAISIAEDDTTVIIADKFG-DVYSIDINSIPEEK--------FT--QEPILGHVSMLTDVHLIKDSDGHQFIITSDR 218 (450)
T ss_dssp SCEEEEEECTTSSEEEEEETTS-EEEEEETTSCCCSS--------CC--CCCSEECSSCEEEEEEEECTTSCEEEEEEET
T ss_pred CCceEEEEcCCCCEEEEEeCCC-cEEEEecCCccccc--------cc--ceeeecccCceEEEEEcCCCCCCcEEEEEcC
Confidence 4477777766555555555588 99999643211110 00 00111122344454433 335555667
Q ss_pred CCCEEEEeCCCCCCccCCCCCCccccEEecccCCCcEEEEEe-cCCeEEEEeeCCCEEEEECCC
Q 016940 277 DGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVAT-GDYTTFVVSEDGDVYSFGCGE 339 (380)
Q Consensus 277 ~g~vy~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~-G~~~t~~l~~~g~v~~wG~n~ 339 (380)
++.|+.|-...... ...+..-....|..++. .....+.-..|+.|..|-...
T Consensus 219 d~~i~vwd~~~~~~-----------~~~~~~~h~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~ 271 (450)
T 2vdu_B 219 DEHIKISHYPQCFI-----------VDKWLFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKT 271 (450)
T ss_dssp TSCEEEEEESCTTC-----------EEEECCCCSSCEEEEEECSTTEEEEEESSSEEEEEETTT
T ss_pred CCcEEEEECCCCce-----------eeeeecCCCCceEEEEECCCCEEEEEeCCCeEEEEECCC
Confidence 88999997533111 11111011223444443 333444445788999997543
No 99
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=48.69 E-value=1.6e+02 Score=26.89 Aligned_cols=232 Identities=13% Similarity=0.058 Sum_probs=114.2
Q ss_pred CCCcEEEE--EeCCCceEEEecCCcEEEeeCCCCCCCccCCCCceeecCCeeecccCCccEEEEeeC-----CCeEEEEe
Q 016940 93 QGIRIIQA--AAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIG-----NFFTAVLS 165 (380)
Q Consensus 93 ~~~~I~~V--~~g~~~~~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g-----~~~~~~lt 165 (380)
.+..+..+ +.+..+.+++|+.|++|.+-...--..|.. ..-.+....++..++.+|+.+..- ..+.+++|
T Consensus 44 e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~---a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T 120 (370)
T 3l6v_A 44 EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSN---ARGRPIINWIPLESGERVQAVLPVREYADNRYVFMAT 120 (370)
T ss_dssp CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTT---SCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEE
T ss_pred CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcc---cCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEe
Confidence 34456554 445555788999999999875433222221 111111122222346778877653 23678889
Q ss_pred cCCcEEEEEeCCCCccCCCCCCCcccccccccccCCCCEEEE--EecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCC
Q 016940 166 REGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQI--AAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRT 243 (380)
Q Consensus 166 ~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i--~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~ 243 (380)
++|.+.-.-...+..... ..-.-+.. ..+..++.+ ..+....+++++ +| .+.-+-.+.-..+|+....
T Consensus 121 ~~G~vKrt~l~e~~~~~~------~G~~ai~L-~~~d~lv~v~~~~~~~~i~l~T~--~G-~~irf~~~~v~~~gR~a~G 190 (370)
T 3l6v_A 121 RNGTVKKTPLSEFAFRLA------RGKIAINL-DEGDALVGVALTDGDRDVLLFAS--NG-KTVRFGESTVRSMGRTATG 190 (370)
T ss_dssp TTSEEEEEEGGGGCSCCT------TCEESSCC-CTTCCEEEEEEECSCCEEEEEET--TS-EEEEEEGGGSCBCCTTCCC
T ss_pred CCCeEEEeEHHHhhcccC------CceEEEEe-CCCCEEEEEEEeCCCceEEEEeC--CC-eEEEEEccccCccCCCCCC
Confidence 999888554444322110 00001111 123334433 334556777776 88 8887766555555543221
Q ss_pred CCCCCeeeeeeecCCCccEEEEc-------------------------------------cCceEEEEeCCCCEEEEeCC
Q 016940 244 DEKHPRLIEQFQLLNLQPVVVAA-------------------------------------GAWHAAVVGQDGRVCTWGWG 286 (380)
Q Consensus 244 ~~~~p~~~~~~~~~~~~i~~i~~-------------------------------------G~~h~~~lt~~g~vy~wG~n 286 (380)
. ....+. .+.+|+.+.. .....+.+|++|..-..=..
T Consensus 191 V-----~~i~L~-~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~ 264 (370)
T 3l6v_A 191 V-----RGIRLA-KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLA 264 (370)
T ss_dssp E-----ECCCCC-TTCCEEEEEEECCC-----------------------------------CEEEEEETTSEEEEEEGG
T ss_pred e-----eeEEeC-CCCEEEEEEEeccccccccccccccccccccccccccccccccccccCCceEEEeeCCCCEEEEEHH
Confidence 1 100010 1112222111 22356777777766555555
Q ss_pred CCCCccCCCCCCccccEEecccCCCcEEEE--EecCCeEEEEeeCCCEEEEECCCCCCCCCC
Q 016940 287 RYGCLGHGNEECESVPKVVQALNDVKAIHV--ATGDYTTFVVSEDGDVYSFGCGESASLGHN 346 (380)
Q Consensus 287 ~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i--~~G~~~t~~l~~~g~v~~wG~n~~gqlG~~ 346 (380)
+|..-+.+....... ++.. .+..++.+ .......+++++.|++...-.++-...|..
T Consensus 265 e~~~~~Rg~kGv~~~--k~~~-~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v~~i~~~gR~ 323 (370)
T 3l6v_A 265 EYPRKGRGTQGVIGI--QTTE-RNGKLVRAVLLGSTDEVMLISDGGTLVRTRGSEISRVGRN 323 (370)
T ss_dssp GSCCBCTTSCCEESS--CCCT-TTCSEEEEEEECTTCEEEEEETTCCEEEEEGGGSCBCCSS
T ss_pred HhcccccCCcceEEE--EecC-CCCcEEEEEEeCCCceEEEEcCCCeEEEeeHhhCCccCCC
Confidence 554443332111000 1110 11133332 234578888999999998866555555543
No 100
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=47.20 E-value=1.6e+02 Score=26.58 Aligned_cols=148 Identities=9% Similarity=0.025 Sum_probs=72.2
Q ss_pred eceEEecCCCe--EEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeCCCceEEE--ecCCcEEEe
Q 016940 44 ENSQAIAGPGH--SIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLI--SDAGQVYAF 119 (380)
Q Consensus 44 ~i~~i~~G~~~--~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g~~~~~~l--t~~G~vy~~ 119 (380)
+|..++..... .+.-..||.|..|-..... ....+... ...|..|+......+++ ..||.|..|
T Consensus 110 ~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~-----------~~~~l~~h-~~~V~~v~~~~~~~~l~sgs~D~~i~iw 177 (410)
T 1vyh_C 110 PVTRVIFHPVFSVMVSASEDATIKVWDYETGD-----------FERTLKGH-TDSVQDISFDHSGKLLASCSADMTIKLW 177 (410)
T ss_dssp CEEEEEECSSSSEEEEEESSSCEEEEETTTCC-----------CCEEECCC-SSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----------EEEEEecc-CCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 44455544433 3333467888888643211 11112211 22577776654433333 467777777
Q ss_pred eCCCCCCCccCCCCceeecCCeeecccCCccEEEEeeC--CCeEEEEecCCcEEEEEeCCCCccCCCCCCCccccccccc
Q 016940 120 GKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIG--NFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLG 197 (380)
Q Consensus 120 G~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g--~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~ 197 (380)
-....-.+ ..+. -....|..++.. ..+.+.-..|+.|..|-...... ...+.
T Consensus 178 d~~~~~~~-------------~~~~-~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~-----------~~~~~- 231 (410)
T 1vyh_C 178 DFQGFECI-------------RTMH-GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC-----------VKTFT- 231 (410)
T ss_dssp ETTSSCEE-------------ECCC-CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE-----------EEEEE-
T ss_pred eCCCCcee-------------EEEc-CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE-----------EEEEe-
Confidence 54221100 0000 112235555543 33455556788888884322110 01111
Q ss_pred ccCCCCEEEEEecCCceEEEEEeCCCCEEEEEec
Q 016940 198 TLENIPVVQIAAGYCYLLALACQPSGMAVYSVGC 231 (380)
Q Consensus 198 ~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~ 231 (380)
.....|..++...+-.++++...|| .|..|=.
T Consensus 232 -~h~~~v~~~~~~~~g~~l~s~s~D~-~v~vwd~ 263 (410)
T 1vyh_C 232 -GHREWVRMVRPNQDGTLIASCSNDQ-TVRVWVV 263 (410)
T ss_dssp -CCSSCEEEEEECTTSSEEEEEETTS-CEEEEET
T ss_pred -CCCccEEEEEECCCCCEEEEEcCCC-eEEEEEC
Confidence 1223466777666666666665688 8988853
No 101
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=47.18 E-value=1.4e+02 Score=25.90 Aligned_cols=233 Identities=9% Similarity=0.056 Sum_probs=109.0
Q ss_pred eeeeceEEecCCC------eEEEEecCCcEEEeeCCCCCCcCCCCCCCcccee-eccCCCCCcEEEEEeCCCceEEEe--
Q 016940 41 CRRENSQAIAGPG------HSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPR-PIRSLQGIRIIQAAAGAGRTMLIS-- 111 (380)
Q Consensus 41 ~~~~i~~i~~G~~------~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~-~v~~~~~~~I~~V~~g~~~~~~lt-- 111 (380)
....|..|+-..+ ..+.-..||.|..|-.... ..... .+.. ....|..+.......++++
T Consensus 31 H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~----------~~~~~~~l~g-h~~~v~~~~~~~~~~~l~s~s 99 (321)
T 3ow8_A 31 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDE----------RLDLQWSLEG-HQLGVVSVDISHTLPIAASSS 99 (321)
T ss_dssp SSSCEEEEEEC-------CEEEEEETTSCEEEEEEETT----------EEEEEEEECC-CSSCEEEEEECSSSSEEEEEE
T ss_pred CCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCC----------Ceeeeeeecc-CCCCEEEEEECCCCCEEEEEe
Confidence 3346777765432 3334457888888853211 00111 1111 1225777776666555543
Q ss_pred cCCcEEEeeCCCCCCCccCCCCceeecCCeeecccCCccEEEEee--CCCeEEEEecCCcEEEEEeCCCCccCCCCCCCc
Q 016940 112 DAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAI--GNFFTAVLSREGRVYTFSWGNDARLGHHTEPND 189 (380)
Q Consensus 112 ~~G~vy~~G~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~--g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~ 189 (380)
.||.|..|-.....++ ..+.. ....+..++. .....+.-..+|.|..|......
T Consensus 100 ~D~~i~lWd~~~~~~~-------------~~~~~-~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~---------- 155 (321)
T 3ow8_A 100 LDAHIRLWDLENGKQI-------------KSIDA-GPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK---------- 155 (321)
T ss_dssp TTSEEEEEETTTTEEE-------------EEEEC-CTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCS----------
T ss_pred CCCcEEEEECCCCCEE-------------EEEeC-CCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCc----------
Confidence 5788888854321110 00000 0011111222 22233344567777777433211
Q ss_pred ccccccccccCCCCEEEEEecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEcc--
Q 016940 190 VEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAG-- 267 (380)
Q Consensus 190 ~~p~~v~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G-- 267 (380)
....+ ......|..++...+-..+++...|| .|+.|-... ...+..+......|..++..
T Consensus 156 -~~~~~--~~~~~~v~~~~~spdg~~lasg~~dg-~i~iwd~~~--------------~~~~~~~~~h~~~v~~l~~spd 217 (321)
T 3ow8_A 156 -KEYSL--DTRGKFILSIAYSPDGKYLASGAIDG-IINIFDIAT--------------GKLLHTLEGHAMPIRSLTFSPD 217 (321)
T ss_dssp -EEEEE--ECSSSCEEEEEECTTSSEEEEEETTS-CEEEEETTT--------------TEEEEEECCCSSCCCEEEECTT
T ss_pred -eeEEe--cCCCceEEEEEECCCCCEEEEEcCCC-eEEEEECCC--------------CcEEEEEcccCCceeEEEEcCC
Confidence 01111 12234477777766655555555688 898884321 12222333233344444433
Q ss_pred CceEEEEeCCCCEEEEeCCCCCCccCCCCCCccccEEecccCCCcEEEEEecC--CeEEEEeeCCCEEEEECC
Q 016940 268 AWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGD--YTTFVVSEDGDVYSFGCG 338 (380)
Q Consensus 268 ~~h~~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~--~~t~~l~~~g~v~~wG~n 338 (380)
....+.-..+|.|..|-..... ....+.. ....|..++... .+.+.-..||.|..|-..
T Consensus 218 ~~~l~s~s~dg~i~iwd~~~~~-----------~~~~~~~-h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~ 278 (321)
T 3ow8_A 218 SQLLVTASDDGYIKIYDVQHAN-----------LAGTLSG-HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVG 278 (321)
T ss_dssp SCEEEEECTTSCEEEEETTTCC-----------EEEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCEEEEEcCCCeEEEEECCCcc-----------eeEEEcC-CCCceEEEEECCCCCEEEEEeCCCcEEEEeCC
Confidence 2344445677888888653311 1111221 122455555433 333444568999999654
No 102
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=46.33 E-value=1.4e+02 Score=25.55 Aligned_cols=32 Identities=16% Similarity=-0.004 Sum_probs=18.8
Q ss_pred EeecceEeeeeceEEecCCCeEEEEecCCcEEEe
Q 016940 34 LLAGEACCRRENSQAIAGPGHSIAVTSKGVVYSF 67 (380)
Q Consensus 34 ~~~~~~~~~~~i~~i~~G~~~~~~l~~~G~v~~~ 67 (380)
.-.++.+++.+..+. ..-|.+.++.+|+++..
T Consensus 22 ~~tG~~~w~~~~~~~--~~~~~~~~~pdG~ilvs 53 (276)
T 3no2_A 22 KDTKEIVWEYPLEKG--WECNSVAATKAGEILFS 53 (276)
T ss_dssp TTTTEEEEEEECCTT--CCCCEEEECTTSCEEEE
T ss_pred CCCCeEEEEeCCCcc--CCCcCeEECCCCCEEEe
Confidence 336666665443210 13577788888888874
No 103
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=45.89 E-value=1.7e+02 Score=26.38 Aligned_cols=118 Identities=12% Similarity=0.044 Sum_probs=59.6
Q ss_pred CcEEEEEeCCCc--eEEEecCCcEEEeeCC--CCCCCccCCCCceeecCCeeeccc------CCccEEEEeeC----CCe
Q 016940 95 IRIIQAAAGAGR--TMLISDAGQVYAFGKD--SFGEAEYGVQGTKLVTSPQLVESL------KNIFVVQAAIG----NFF 160 (380)
Q Consensus 95 ~~I~~V~~g~~~--~~~lt~~G~vy~~G~n--~~gqlG~~~~~~~~~~~p~~v~~~------~~~~i~~i~~g----~~~ 160 (380)
..|..|+..... .+.-..||.|..|-.. ..+++- .......+..+ .+..+..+..- ...
T Consensus 112 ~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (437)
T 3gre_A 112 STVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEV-------KFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSL 184 (437)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEE-------EEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEE
T ss_pred CCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCcee-------eccccceeEEEEccCcccccCceEEEEEEcCCCCE
Confidence 368888776543 4444678888888542 122210 00000111100 22334444421 334
Q ss_pred EEEEecCCcEEEEEeCCCCccCCCCCCCcccccccccccCCCCEEEEEecCCceEEEEEeCCCCEEEEEec
Q 016940 161 TAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGC 231 (380)
Q Consensus 161 ~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~ 231 (380)
.+.-+.+|.|+.|-..... ....+..+.....|..++.......+++...|| .|..|-.
T Consensus 185 l~~~~~d~~i~iwd~~~~~-----------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg-~i~iwd~ 243 (437)
T 3gre_A 185 LVALTNLSRVIIFDIRTLE-----------RLQIIENSPRHGAVSSICIDEECCVLILGTTRG-IIDIWDI 243 (437)
T ss_dssp EEEEETTSEEEEEETTTCC-----------EEEEEECCGGGCCEEEEEECTTSCEEEEEETTS-CEEEEET
T ss_pred EEEEeCCCeEEEEeCCCCe-----------eeEEEccCCCCCceEEEEECCCCCEEEEEcCCC-eEEEEEc
Confidence 5555678888887432210 011111111234588888876666666666688 9999953
No 104
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=45.76 E-value=1.7e+02 Score=26.40 Aligned_cols=50 Identities=10% Similarity=0.266 Sum_probs=27.8
Q ss_pred CCCCEEEEeCCCCCCccCCCCCCccccEEecccCCCcEEEEEecCCeEEEEe--eCCCEEEEEC
Q 016940 276 QDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVS--EDGDVYSFGC 337 (380)
Q Consensus 276 ~~g~vy~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~t~~l~--~~g~v~~wG~ 337 (380)
.+|.|+.|-...... ...+.. ....|..++...+...+++ .||.|..|=-
T Consensus 342 ~d~~I~iwd~~~~~~-----------v~~l~g-H~~~V~~l~~spdg~~l~S~s~D~tvriWdv 393 (420)
T 4gga_A 342 AQNQLVIWKYPTMAK-----------VAELKG-HTSRVLSLTMSPDGATVASAAADETLRLWRC 393 (420)
T ss_dssp TTCCEEEEETTTCCE-----------EEEECC-CSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred CCCEEEEEECCCCcE-----------EEEEcC-CCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 578899996533111 112221 1235777776554444443 6888999943
No 105
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=44.93 E-value=2e+02 Score=26.99 Aligned_cols=183 Identities=17% Similarity=0.098 Sum_probs=89.2
Q ss_pred cEEEEEeCCC--ceEEEecCCcEEEeeCCCCCCCccCCCCceeecCCeeecccCCccEEEEeeCCC--eEEEEecCCcEE
Q 016940 96 RIIQAAAGAG--RTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNF--FTAVLSREGRVY 171 (380)
Q Consensus 96 ~I~~V~~g~~--~~~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~--~~~~lt~~G~vy 171 (380)
.|..++.... +.+.-.++|.+..|-.+ +++ . ..+.. ....|..++...+ ..+.-..++.|+
T Consensus 346 ~v~~~~~s~~g~~l~~~~~dg~v~~~~~~--~~~---------~---~~~~~-~~~~v~~~~~s~dg~~l~~~~~d~~v~ 410 (577)
T 2ymu_A 346 SVWGVAFSPDGQTIASASDDKTVKLWNRN--GQL---------L---QTLTG-HSSSVRGVAFSPDGQTIASASDDKTVK 410 (577)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETT--CCE---------E---EEEEC-CSSCEEEEEECTTSSCEEEEETTSEEE
T ss_pred CEEEEEECCCCCEEEEEeCCCEEEEEcCC--CCE---------E---EEecC-CCCCeEEEEECCCCCEEEEEeCCCEEE
Confidence 5666665433 33444567777777432 211 0 01111 1233666654432 344456778888
Q ss_pred EEEeCCCCccCCCCCCCcccccccccccCCCCEEEEEecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeee
Q 016940 172 TFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLI 251 (380)
Q Consensus 172 ~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~ 251 (380)
.|- ..+++ ...+. .....|..++...+...+++...|+ .|..|-.+ + ..+
T Consensus 411 ~~~--~~~~~----------~~~~~--~~~~~v~~~~~s~d~~~l~~~~~d~-~v~~w~~~--~-------------~~~ 460 (577)
T 2ymu_A 411 LWN--RNGQL----------LQTLT--GHSSSVWGVAFSPDDQTIASASDDK-TVKLWNRN--G-------------QLL 460 (577)
T ss_dssp EEC--TTCCE----------EEEEE--CCSSCEEEEEECTTSSEEEEEETTS-EEEEEETT--S-------------CEE
T ss_pred EEe--CCCCE----------EEEec--CCCCCeEEEEECCCCCEEEEEcCCC-EEEEEECC--C-------------CEE
Confidence 772 11110 11111 1234577777766655555555688 99999421 1 122
Q ss_pred eeeecCCCccEEEEccCc--eEEEEeCCCCEEEEeCCCCCCccCCCCCCccccEEecccCCCcEEEEEecCC--eEEEEe
Q 016940 252 EQFQLLNLQPVVVAAGAW--HAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDY--TTFVVS 327 (380)
Q Consensus 252 ~~~~~~~~~i~~i~~G~~--h~~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~~--~t~~l~ 327 (380)
..+......|..++...+ ..+.-..++.|+.|-.+ ++ ....+.. ....|..++...+ ..+.-.
T Consensus 461 ~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~--~~----------~~~~~~~-h~~~v~~l~~s~dg~~l~s~~ 527 (577)
T 2ymu_A 461 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQ----------LLQTLTG-HSSSVRGVAFSPDGQTIASAS 527 (577)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT--SC----------EEEEEEC-CSSCEEEEEECTTSSCEEEEE
T ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC--CC----------EEEEEeC-CCCCEEEEEEcCCCCEEEEEE
Confidence 223333445555554433 33334577888888632 21 1122221 1234655554433 333344
Q ss_pred eCCCEEEEE
Q 016940 328 EDGDVYSFG 336 (380)
Q Consensus 328 ~~g~v~~wG 336 (380)
.||.|+.|=
T Consensus 528 ~dg~v~lwd 536 (577)
T 2ymu_A 528 DDKTVKLWN 536 (577)
T ss_dssp TTSEEEEEC
T ss_pred CcCEEEEEe
Confidence 678899984
No 106
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=44.19 E-value=1.5e+02 Score=25.33 Aligned_cols=168 Identities=12% Similarity=0.018 Sum_probs=79.6
Q ss_pred cCCccEEEEeeC-CCeEEEEecCCc-EEEEEeCCCCccCCCCCCCcccccccccccCCCCEEEEEecCCceEEEEEeCCC
Q 016940 146 LKNIFVVQAAIG-NFFTAVLSREGR-VYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSG 223 (380)
Q Consensus 146 ~~~~~i~~i~~g-~~~~~~lt~~G~-vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i~~g~~~~~~l~~~~~G 223 (380)
+.+.++.-..++ ....++++.+|+ ++.++... .. ......|..+.. ..+-.+. ++...++.+..... +|
T Consensus 85 ~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~--~~----~~~~~~~~~v~~-~~~G~~l-v~~~~~~~v~~~d~-~G 155 (276)
T 3no2_A 85 LPDGNALVAWCGHPSTILEVNMKGEVLSKTEFET--GI----ERPHAQFRQINK-NKKGNYL-VPLFATSEVREIAP-NG 155 (276)
T ss_dssp CTTSCEEEEEESTTEEEEEECTTSCEEEEEEECC--SC----SSGGGSCSCCEE-CTTSCEE-EEETTTTEEEEECT-TS
T ss_pred CCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccC--CC----CcccccccCceE-CCCCCEE-EEecCCCEEEEECC-CC
Confidence 344555555566 555666777886 44443321 10 000011222222 2233344 23333333333322 57
Q ss_pred CEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEccCc-eEEEEeCC-CC-EEEEeCCCCCCccCCCCCCcc
Q 016940 224 MAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAW-HAAVVGQD-GR-VCTWGWGRYGCLGHGNEECES 300 (380)
Q Consensus 224 ~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~-h~~~lt~~-g~-vy~wG~n~~gqLG~~~~~~~~ 300 (380)
+.+|.++... .|..+... .+..+. |++... ..++++.+ |+ +|-++.+... .....
T Consensus 156 ~~~w~~~~~~-------------~~~~~~~~--~~g~~~-v~~~~~~~v~~~d~~tG~~~w~~~~~~~~------~~~l~ 213 (276)
T 3no2_A 156 QLLNSVKLSG-------------TPFSSAFL--DNGDCL-VACGDAHCFVQLNLESNRIVRRVNANDIE------GVQLF 213 (276)
T ss_dssp CEEEEEECSS-------------CCCEEEEC--TTSCEE-EECBTTSEEEEECTTTCCEEEEEEGGGSB------SCCCS
T ss_pred CEEEEEECCC-------------CccceeEc--CCCCEE-EEeCCCCeEEEEeCcCCcEEEEecCCCCC------Ccccc
Confidence 6788876421 12222221 233333 444444 46677766 77 5566543210 01123
Q ss_pred ccEEecccCCCcEEEEEe--c---------CCeEEEEeeCCCEEEEECCCCCCCCCC
Q 016940 301 VPKVVQALNDVKAIHVAT--G---------DYTTFVVSEDGDVYSFGCGESASLGHN 346 (380)
Q Consensus 301 ~p~~i~~~~~~~i~~i~~--G---------~~~t~~l~~~g~v~~wG~n~~gqlG~~ 346 (380)
.|..+..+.+-.+. |+. | ..+.+.++.+|++ .|--++...+|.-
T Consensus 214 ~~~~~~~~~~G~i~-v~~~~g~~~~~~~~~~~~~~~~~~~g~~-~W~~~~~~~~~~~ 268 (276)
T 3no2_A 214 FVAQLFPLQNGGLY-ICNWQGHDREAGKGKHPQLVEIDSEGKV-VWQLNDKVKFGMI 268 (276)
T ss_dssp EEEEEEECTTSCEE-EEEECTTCTTGGGSCCCSEEEECTTSBE-EEEECCTTTSCCC
T ss_pred ccccceEcCCCCEE-EEeccCccccccccCCceEEEECCCCCE-EEEecCcccccce
Confidence 45554444454443 333 2 3357888889987 7777777777653
No 107
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=43.95 E-value=1.6e+02 Score=25.60 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=20.0
Q ss_pred eEEecCCCeEEEEecCCcEEEeeCCC
Q 016940 46 SQAIAGPGHSIAVTSKGVVYSFGSNS 71 (380)
Q Consensus 46 ~~i~~G~~~~~~l~~~G~v~~~G~n~ 71 (380)
++...|.-..++++.+|++|+.+.+.
T Consensus 19 ~~~~l~~v~~va~d~~G~l~v~~~~~ 44 (329)
T 3fvz_A 19 VYLLPGQVSGVALDSKNNLVIFHRGD 44 (329)
T ss_dssp GGCCCSCEEEEEECTTCCEEEEECTT
T ss_pred hceecCCceEEEECCCCCEEEEeCCC
Confidence 34455667788999999999887665
No 108
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=42.23 E-value=1.8e+02 Score=25.61 Aligned_cols=196 Identities=9% Similarity=-0.020 Sum_probs=99.6
Q ss_pred eeceEEecCCC---eEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccC-CCCCcEEEEEeCC---CceEEEecCCc
Q 016940 43 RENSQAIAGPG---HSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRS-LQGIRIIQAAAGA---GRTMLISDAGQ 115 (380)
Q Consensus 43 ~~i~~i~~G~~---~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~-~~~~~I~~V~~g~---~~~~~lt~~G~ 115 (380)
.+|..++.... ..+.-..||.|..|-..... ....+.. -....|..++... ...+.-..||.
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~ 142 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQN-----------KTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGA 142 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTT-----------CEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTE
T ss_pred CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcc-----------cceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCE
Confidence 35555554443 35555678888888644211 1111211 1233688887755 33444567899
Q ss_pred EEEeeCCCCCCCccCCCCceeecCCeeecccCCccEEEEeeC--CCeEEEEecCCcEEEEEeCCCCccCCCCCCCccccc
Q 016940 116 VYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIG--NFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPH 193 (380)
Q Consensus 116 vy~~G~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g--~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~ 193 (380)
|..|-... .. ....... ......|..++.. ....+.-..+|.|+.|-.. ++ ...
T Consensus 143 i~iwd~~~-~~-------~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~----------~~~ 198 (383)
T 3ei3_B 143 TTLRDFSG-SV-------IQVFAKT----DSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD--GH----------EIF 198 (383)
T ss_dssp EEEEETTS-CE-------EEEEECC----CCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT--SC----------EEE
T ss_pred EEEEECCC-Cc-------eEEEecc----CCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC--CC----------EEE
Confidence 99996541 10 0000000 0011224444433 3345555678888877431 10 011
Q ss_pred ccccccCCCCEEEEEecCCce-EEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEccC---c
Q 016940 194 PLLGTLENIPVVQIAAGYCYL-LALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGA---W 269 (380)
Q Consensus 194 ~v~~~~~~~~i~~i~~g~~~~-~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~---~ 269 (380)
.+. .....|..++...... ++++...|| .|+.|-...... ....+..+ .....|..++... .
T Consensus 199 ~~~--~h~~~v~~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~----------~~~~~~~~-~~~~~v~~~~~s~~~~~ 264 (383)
T 3ei3_B 199 KEK--LHKAKVTHAEFNPRCDWLMATSSVDA-TVKLWDLRNIKD----------KNSYIAEM-PHEKPVNAAYFNPTDST 264 (383)
T ss_dssp EEE--CSSSCEEEEEECSSCTTEEEEEETTS-EEEEEEGGGCCS----------TTCEEEEE-ECSSCEEEEEECTTTSC
T ss_pred Eec--cCCCcEEEEEECCCCCCEEEEEeCCC-EEEEEeCCCCCc----------ccceEEEe-cCCCceEEEEEcCCCCC
Confidence 111 2234588888776655 555555688 999996432110 01122222 1334565665433 4
Q ss_pred eEEEEeCCCCEEEEeCCC
Q 016940 270 HAAVVGQDGRVCTWGWGR 287 (380)
Q Consensus 270 h~~~lt~~g~vy~wG~n~ 287 (380)
..++-..+|.|+.|-...
T Consensus 265 ~l~~~~~d~~i~iwd~~~ 282 (383)
T 3ei3_B 265 KLLTTDQRNEIRVYSSYD 282 (383)
T ss_dssp EEEEEESSSEEEEEETTB
T ss_pred EEEEEcCCCcEEEEECCC
Confidence 555667788999997654
No 109
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=41.85 E-value=1.8e+02 Score=25.58 Aligned_cols=218 Identities=14% Similarity=0.087 Sum_probs=113.3
Q ss_pred EecCCCeEEEEecCCcEEEeeCCCCCCcCCCCCCCccce--eeccCCCCCcEEEEEe-----CCCceEEEecCCcEEEee
Q 016940 48 AIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRP--RPIRSLQGIRIIQAAA-----GAGRTMLISDAGQVYAFG 120 (380)
Q Consensus 48 i~~G~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p--~~v~~~~~~~I~~V~~-----g~~~~~~lt~~G~vy~~G 120 (380)
++...++.+++|+.|++|..-...--..+.. ..-.| ..++...+++|+.+.. ...+.+++|++|.+--.-
T Consensus 49 ~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~---a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~ 125 (307)
T 1zi0_A 49 VANTHDHILCFSSRGRVYSMKVYQLPEATRG---ARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTV 125 (307)
T ss_dssp EEETTCEEEEEETTSEEEEEEGGGSCCCCSS---SCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEE
T ss_pred EECCCCEEEEEECCCEEEEEEhhHCcCCCCC---CCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEE
Confidence 5667889999999999999876543222221 11112 2223335668887754 233577889999877664
Q ss_pred CCCCCCCccCCCCceeecCCee-ecccCCccEEEE--eeCCCeEEEEecCCcEEEEEeCCCCccCCCCCCCccccccccc
Q 016940 121 KDSFGEAEYGVQGTKLVTSPQL-VESLKNIFVVQA--AIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLG 197 (380)
Q Consensus 121 ~n~~gqlG~~~~~~~~~~~p~~-v~~~~~~~i~~i--~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~ 197 (380)
..++-.... .... +...++..++.+ ..+.++.+++|++|+++-+-...-..+|...... ..+..
T Consensus 126 l~e~~~~~r---------~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv----~~i~L 192 (307)
T 1zi0_A 126 LTEFNRLRT---------AGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGV----RGIRL 192 (307)
T ss_dssp GGGGTTCCT---------TCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCE----ECCCC
T ss_pred HHHhhcccc---------CCeEEEEECCCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCe----EeEEe
Confidence 432211100 0111 111123344443 3356788999999999977666555555433221 11221
Q ss_pred ccCCCCEEEEEecC--CceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEc--cCceEEE
Q 016940 198 TLENIPVVQIAAGY--CYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAA--GAWHAAV 273 (380)
Q Consensus 198 ~~~~~~i~~i~~g~--~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~--G~~h~~~ 273 (380)
..+..|+.+..-. ...+.++. +| .+--.-...+..-+++. .-.....+...+..++.+.. .....++
T Consensus 193 -~~~d~Vv~~~~~~~~~~ll~~T~--~G-~~Kr~~~~e~~~~~Rg~-----kG~~~~~~~~~~~~lv~~~~v~~~~~l~~ 263 (307)
T 1zi0_A 193 -GEGDKVVSLIVPRGDGAILTATQ--NG-YGKRTAVAEYPTKSRAT-----KGVISIKVTERNGLVVGAVQVDDCDQIMM 263 (307)
T ss_dssp -CTTCCEEEEECCCSSCEEEEEET--TS-EEEEECGGGSCCCCTTS-----CCEESSCCCTTTCSEEEEEEECTTCEEEE
T ss_pred -CCCCEEEEEEEecCCCEEEEEEc--CC-ceEEEEHHHhccCCCCC-----CCEEeeEecCCCCeEEEEEEeCCCceEEE
Confidence 3455677765432 23444454 66 54333223322111211 11111122222234544333 5567889
Q ss_pred EeCCCCEEEEeCCCCCC
Q 016940 274 VGQDGRVCTWGWGRYGC 290 (380)
Q Consensus 274 lt~~g~vy~wG~n~~gq 290 (380)
+|++|++.-+-.+....
T Consensus 264 ~t~~g~~ir~~~~~i~~ 280 (307)
T 1zi0_A 264 ITDAGTLVRTRVSEISI 280 (307)
T ss_dssp EESSCCEEEEEGGGSCB
T ss_pred EcCCCcEEEEecccccc
Confidence 99999998877665433
No 110
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=40.30 E-value=2.1e+02 Score=25.93 Aligned_cols=30 Identities=10% Similarity=-0.052 Sum_probs=20.5
Q ss_pred CCEEEEEecCCceEEEEEeCCCCEEEEEecC
Q 016940 202 IPVVQIAAGYCYLLALACQPSGMAVYSVGCG 232 (380)
Q Consensus 202 ~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n 232 (380)
..|..++...+...+++...|| .|+.|-..
T Consensus 297 ~~v~~~~~spdg~~l~s~~~D~-~i~iwd~~ 326 (435)
T 4e54_B 297 HPVNAACFSPDGARLLTTDQKS-EIRVYSAS 326 (435)
T ss_dssp SCEEECCBCTTSSEEEEEESSS-CEEEEESS
T ss_pred ccccceeECCCCCeeEEEcCCC-EEEEEECC
Confidence 4477777666655666666688 99999643
No 111
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=40.17 E-value=1.8e+02 Score=25.14 Aligned_cols=167 Identities=8% Similarity=-0.121 Sum_probs=79.5
Q ss_pred CcEEEEEeCCC--ceEEEecCCcEEEeeCCCCCCCccCCCCceeecCCeeecccCCccEEEEeeCCC--eEEEEecCCcE
Q 016940 95 IRIIQAAAGAG--RTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNF--FTAVLSREGRV 170 (380)
Q Consensus 95 ~~I~~V~~g~~--~~~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~--~~~~lt~~G~v 170 (380)
..|..++.... ..+.-..+|.++.|-...... ......+.......|..++...+ ..+.-..+|.|
T Consensus 97 ~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~----------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 166 (372)
T 1k8k_C 97 RAARCVRWAPNEKKFAVGSGSRVISICYFEQEND----------WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKC 166 (372)
T ss_dssp SCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT----------EEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CceeEEEECCCCCEEEEEeCCCEEEEEEecCCCc----------ceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCE
Confidence 36777776543 334445678887775432111 00011111111234666665433 44455678999
Q ss_pred EEEEeCCCCccCCCCCCC-----ccccccccc-ccCCCCEEEEEecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCC
Q 016940 171 YTFSWGNDARLGHHTEPN-----DVEPHPLLG-TLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTD 244 (380)
Q Consensus 171 y~~G~n~~gqlg~~~~~~-----~~~p~~v~~-~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~ 244 (380)
+.|-..... +....... ......+.. ......|..++...+...+++...|| .|+.|-....
T Consensus 167 ~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~---------- 234 (372)
T 1k8k_C 167 RIFSAYIKE-VEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS-TVCLADADKK---------- 234 (372)
T ss_dssp EEEECCCTT-TSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTT-EEEEEEGGGT----------
T ss_pred EEEEccccc-ccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCC-EEEEEECCCC----------
Confidence 988543211 00000000 000011111 12234588888776655555555688 9999964321
Q ss_pred CCCCeeeeeeecCCCccEEEEcc-CceEEEEeCCCCEEEEeCCC
Q 016940 245 EKHPRLIEQFQLLNLQPVVVAAG-AWHAAVVGQDGRVCTWGWGR 287 (380)
Q Consensus 245 ~~~p~~~~~~~~~~~~i~~i~~G-~~h~~~lt~~g~vy~wG~n~ 287 (380)
..+..+......+..++.. ....++...+|.++.|-...
T Consensus 235 ----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~ 274 (372)
T 1k8k_C 235 ----MAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDS 274 (372)
T ss_dssp ----TEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred ----ceeEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccC
Confidence 1222222233344444432 23455555788888887544
No 112
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=39.90 E-value=1.8e+02 Score=25.08 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=12.2
Q ss_pred ceEEEEeCCCCEEEEeC
Q 016940 269 WHAAVVGQDGRVCTWGW 285 (380)
Q Consensus 269 ~h~~~lt~~g~vy~wG~ 285 (380)
.|+++. .+++||++|-
T Consensus 151 ~~~~~~-~~~~iyv~GG 166 (318)
T 2woz_A 151 GHNVIS-HNGMIYCLGG 166 (318)
T ss_dssp SCEEEE-ETTEEEEECC
T ss_pred ccEEEE-ECCEEEEEcC
Confidence 466666 5889999995
No 113
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=39.16 E-value=2.3e+02 Score=25.88 Aligned_cols=130 Identities=13% Similarity=0.075 Sum_probs=71.9
Q ss_pred EEecCCCeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeC-----CCceEEEecCCcEEEeeC
Q 016940 47 QAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAG-----AGRTMLISDAGQVYAFGK 121 (380)
Q Consensus 47 ~i~~G~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g-----~~~~~~lt~~G~vy~~G~ 121 (380)
.++.+..+.+++|+.|++|-+-...--..|.... -......++...+.+|+.+..- ..+.+++|++|.+--.-.
T Consensus 52 ~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~-G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l 130 (370)
T 3l6v_A 52 WLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNAR-GRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPL 130 (370)
T ss_dssp EEECTTCEEEEEETTSEEEEEEGGGSCBCCTTSC-CEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEG
T ss_pred EEecCCCEEEEEeCCCeEEEEEHHHCcCCCcccC-CcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEH
Confidence 3566777889999999999886543222221110 0011112222356788888653 336788899998777664
Q ss_pred CCCCCCccCCCCceeecCCeeecccCCccEEE--EeeCCCeEEEEecCCcEEEEEeCCCCccCCCC
Q 016940 122 DSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQ--AAIGNFFTAVLSREGRVYTFSWGNDARLGHHT 185 (380)
Q Consensus 122 n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~--i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~ 185 (380)
..+-..... .. . -+...++..++. +..+.++.+++|++|++.-+-...-..+|...
T Consensus 131 ~e~~~~~~~---G~-~----ai~L~~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a 188 (370)
T 3l6v_A 131 SEFAFRLAR---GK-I----AINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTA 188 (370)
T ss_dssp GGGCSCCTT---CE-E----SSCCCTTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTC
T ss_pred HHhhcccCC---ce-E----EEEeCCCCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCCC
Confidence 443221100 00 0 011112333443 33466789999999999877666555555443
No 114
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=39.16 E-value=2e+02 Score=25.31 Aligned_cols=161 Identities=11% Similarity=-0.020 Sum_probs=75.0
Q ss_pred eeceEEecCCCeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCC-CCcEEEEEeCCCceEEE---ecCCcEEE
Q 016940 43 RENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQ-GIRIIQAAAGAGRTMLI---SDAGQVYA 118 (380)
Q Consensus 43 ~~i~~i~~G~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~-~~~I~~V~~g~~~~~~l---t~~G~vy~ 118 (380)
.+|..|+......++. .+++|+.|-..... ..+..+. ...+..++. ..+++ ..+|.|..
T Consensus 101 ~~v~~v~~~~~~~~~~-~~~~i~i~d~~~~~-------------~~~~~~~~~~~~~~~s~---~~la~~sg~~~g~v~i 163 (355)
T 3vu4_A 101 APVKDLFLSREFIVVS-YGDVISVFKFGNPW-------------KRITDDIRFGGVCEFSN---GLLVYSNEFNLGQIHI 163 (355)
T ss_dssp SCEEEEEECSSEEEEE-ETTEEEEEESSTTC-------------CBSSCCEEEEEEEEEET---TEEEEEESSCTTCEEE
T ss_pred CceEEEEEcCCEEEEE-EcCEEEEEECCCCc-------------eeeEEeccCCceEEEEc---cEEEEeCCCcCcEEEE
Confidence 3566666666554443 56788888644320 0111000 112333333 33333 57888988
Q ss_pred eeCCCCCCCccCCCC-ceeecCC-eeecccCCccEEEEeeCCCe--EEEEecCCc-EEEEEeCCCCccCCCCCCCccccc
Q 016940 119 FGKDSFGEAEYGVQG-TKLVTSP-QLVESLKNIFVVQAAIGNFF--TAVLSREGR-VYTFSWGNDARLGHHTEPNDVEPH 193 (380)
Q Consensus 119 ~G~n~~gqlG~~~~~-~~~~~~p-~~v~~~~~~~i~~i~~g~~~--~~~lt~~G~-vy~~G~n~~gqlg~~~~~~~~~p~ 193 (380)
|-.....+......+ ......| .....-....|..++...+- .+.-..||. |..|-...... ..
T Consensus 164 wd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~-----------~~ 232 (355)
T 3vu4_A 164 TKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVL-----------VR 232 (355)
T ss_dssp EECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCE-----------EE
T ss_pred EECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcE-----------EE
Confidence 876543221100000 0011112 11111123447777765543 333456787 88774332110 11
Q ss_pred ccccccCCCCEEEEEecCCceEEEEEeCCCCEEEEEecC
Q 016940 194 PLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCG 232 (380)
Q Consensus 194 ~v~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n 232 (380)
.+........|..++...+...+++...|| .|..|-..
T Consensus 233 ~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~-~v~iw~~~ 270 (355)
T 3vu4_A 233 EFRRGLDRADVVDMKWSTDGSKLAVVSDKW-TLHVFEIF 270 (355)
T ss_dssp EEECTTCCSCEEEEEECTTSCEEEEEETTC-EEEEEESS
T ss_pred EEEcCCCCCcEEEEEECCCCCEEEEEECCC-EEEEEEcc
Confidence 111001234588888877666666665688 99999654
No 115
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=39.09 E-value=3.1e+02 Score=27.41 Aligned_cols=18 Identities=11% Similarity=0.082 Sum_probs=13.6
Q ss_pred eEEEEeeCCCEEEEECCC
Q 016940 322 TTFVVSEDGDVYSFGCGE 339 (380)
Q Consensus 322 ~t~~l~~~g~v~~wG~n~ 339 (380)
++++.+.+|++|.-|.+-
T Consensus 631 ~~~~~~~~G~l~~g~~~G 648 (781)
T 3v9f_A 631 GCVTKDHNGLIYFGSING 648 (781)
T ss_dssp EEEEECTTSCEEEEETTE
T ss_pred CceEECCCCEEEEECCCc
Confidence 356677899999988763
No 116
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=38.98 E-value=2.5e+02 Score=26.33 Aligned_cols=144 Identities=16% Similarity=0.051 Sum_probs=75.0
Q ss_pred cEEEEEeCCC--ceEEEecCCcEEEeeCCCCCCCccCCCCceeecCCeeecccCCccEEEEeeCCC--eEEEEecCCcEE
Q 016940 96 RIIQAAAGAG--RTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNF--FTAVLSREGRVY 171 (380)
Q Consensus 96 ~I~~V~~g~~--~~~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~--~~~~lt~~G~vy 171 (380)
.|..++.... ..+.-..|+.|+.|-. .+++ ...+.. ....|..++...+ ..+.-..++.|.
T Consensus 387 ~v~~~~~s~dg~~l~~~~~d~~v~~~~~--~~~~------------~~~~~~-~~~~v~~~~~s~d~~~l~~~~~d~~v~ 451 (577)
T 2ymu_A 387 SVRGVAFSPDGQTIASASDDKTVKLWNR--NGQL------------LQTLTG-HSSSVWGVAFSPDDQTIASASDDKTVK 451 (577)
T ss_dssp CEEEEEECTTSSCEEEEETTSEEEEECT--TCCE------------EEEEEC-CSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEeC--CCCE------------EEEecC-CCCCeEEEEECCCCCEEEEEcCCCEEE
Confidence 6777766543 3344457788888842 2221 001111 1223555554432 333445678888
Q ss_pred EEEeCCCCccCCCCCCCcccccccccccCCCCEEEEEecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeee
Q 016940 172 TFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLI 251 (380)
Q Consensus 172 ~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~ 251 (380)
.|-. .++ ....+. .....|..++...+..++++...|+ .|+.|-.+ + ..+
T Consensus 452 ~w~~--~~~----------~~~~~~--~~~~~v~~~~~spd~~~las~~~d~-~i~iw~~~--~-------------~~~ 501 (577)
T 2ymu_A 452 LWNR--NGQ----------LLQTLT--GHSSSVRGVAFSPDGQTIASASDDK-TVKLWNRN--G-------------QLL 501 (577)
T ss_dssp EEET--TSC----------EEEEEE--CCSSCEEEEEECTTSCEEEEEETTS-EEEEEETT--S-------------CEE
T ss_pred EEEC--CCC----------EEEEEc--CCCCCEEEEEEcCCCCEEEEEeCCC-EEEEEcCC--C-------------CEE
Confidence 7731 111 011111 2234588888777766666666688 99999521 1 122
Q ss_pred eeeecCCCccEEEEccC--ceEEEEeCCCCEEEEe
Q 016940 252 EQFQLLNLQPVVVAAGA--WHAAVVGQDGRVCTWG 284 (380)
Q Consensus 252 ~~~~~~~~~i~~i~~G~--~h~~~lt~~g~vy~wG 284 (380)
..+......|..++... ...+.-..+|.|+.|-
T Consensus 502 ~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd 536 (577)
T 2ymu_A 502 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 536 (577)
T ss_dssp EEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEe
Confidence 23333344566665433 3444556788899994
No 117
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=37.50 E-value=1.9e+02 Score=24.59 Aligned_cols=18 Identities=6% Similarity=-0.121 Sum_probs=12.3
Q ss_pred ceEEEEeCCCCEEEEeCCC
Q 016940 269 WHAAVVGQDGRVCTWGWGR 287 (380)
Q Consensus 269 ~h~~~lt~~g~vy~wG~n~ 287 (380)
.|++++. ++++|++|-..
T Consensus 199 ~~~~~~~-~~~i~v~GG~~ 216 (301)
T 2vpj_A 199 GAGVALL-NDHIYVVGGFD 216 (301)
T ss_dssp SCEEEEE-TTEEEEECCBC
T ss_pred cceEEEE-CCEEEEEeCCC
Confidence 4555554 78999998543
No 118
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=36.87 E-value=2.4e+02 Score=25.55 Aligned_cols=69 Identities=13% Similarity=0.087 Sum_probs=35.1
Q ss_pred eeeceEEecCC---CeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCC-CCCcEEEEEeCC---CceEEEecCC
Q 016940 42 RRENSQAIAGP---GHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSL-QGIRIIQAAAGA---GRTMLISDAG 114 (380)
Q Consensus 42 ~~~i~~i~~G~---~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~-~~~~I~~V~~g~---~~~~~lt~~G 114 (380)
.++|..++-.. ...+.=..||.|..|-..... .+..+... -...|..|+... ...+.-..||
T Consensus 119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~-----------~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~ 187 (435)
T 4e54_B 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD-----------KPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEG 187 (435)
T ss_dssp SSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCS-----------CCEEECCCSSSCCCCEEEECSSCTTEEEEECSSS
T ss_pred CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCC-----------ceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCC
Confidence 34677777543 233344689999999532111 11111111 122566776542 2223334678
Q ss_pred cEEEeeC
Q 016940 115 QVYAFGK 121 (380)
Q Consensus 115 ~vy~~G~ 121 (380)
.|..|-.
T Consensus 188 ~v~iwd~ 194 (435)
T 4e54_B 188 TTRLQDF 194 (435)
T ss_dssp CEEEEET
T ss_pred EEEEeec
Confidence 8888843
No 119
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=36.72 E-value=2.1e+02 Score=24.85 Aligned_cols=68 Identities=10% Similarity=-0.009 Sum_probs=38.1
Q ss_pred cEEEEeeCCCe--EEEEecCCcEEEEEeCCCCccCCCCCCCcccccccccccCCCCEEEEEecCCceEEEEEeCCCCEEE
Q 016940 150 FVVQAAIGNFF--TAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVY 227 (380)
Q Consensus 150 ~i~~i~~g~~~--~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy 227 (380)
.|..++...+. .+.-..||.|..|-..... ....+. .....|..++...+...+++...|| .|.
T Consensus 78 ~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~-----------~~~~~~--~h~~~v~~v~~sp~~~~l~s~~~d~-~i~ 143 (343)
T 2xzm_R 78 FVSDLALSQENCFAISSSWDKTLRLWDLRTGT-----------TYKRFV--GHQSEVYSVAFSPDNRQILSAGAER-EIK 143 (343)
T ss_dssp CEEEEEECSSTTEEEEEETTSEEEEEETTSSC-----------EEEEEE--CCCSCEEEEEECSSTTEEEEEETTS-CEE
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECCCCc-----------EEEEEc--CCCCcEEEEEECCCCCEEEEEcCCC-EEE
Confidence 46666654443 3334568888887432210 001111 1234588888776665666665688 999
Q ss_pred EEec
Q 016940 228 SVGC 231 (380)
Q Consensus 228 ~~G~ 231 (380)
.|-.
T Consensus 144 ~wd~ 147 (343)
T 2xzm_R 144 LWNI 147 (343)
T ss_dssp EEES
T ss_pred EEec
Confidence 9954
No 120
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=35.90 E-value=2.4e+02 Score=25.24 Aligned_cols=31 Identities=3% Similarity=-0.148 Sum_probs=21.6
Q ss_pred CCCEEEEEecCCc-eEEEEEeCCCCEEEEEecC
Q 016940 201 NIPVVQIAAGYCY-LLALACQPSGMAVYSVGCG 232 (380)
Q Consensus 201 ~~~i~~i~~g~~~-~~~l~~~~~G~~vy~~G~n 232 (380)
...|..++..... .++++...|| .|..|-..
T Consensus 226 ~~~v~~~~~~p~~~~~l~s~~~dg-~i~iwd~~ 257 (447)
T 3dw8_B 226 TEVITAAEFHPNSCNTFVYSSSKG-TIRLCDMR 257 (447)
T ss_dssp CCCEEEEEECSSCTTEEEEEETTS-CEEEEETT
T ss_pred CcceEEEEECCCCCcEEEEEeCCC-eEEEEECc
Confidence 3458888887765 5555555688 99999654
No 121
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=35.83 E-value=2.1e+02 Score=24.49 Aligned_cols=158 Identities=13% Similarity=0.061 Sum_probs=82.2
Q ss_pred EEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEE--EeCCCceEEEecCCcEEEeeCCCCCCCccCCC
Q 016940 55 SIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQA--AAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQ 132 (380)
Q Consensus 55 ~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V--~~g~~~~~~lt~~G~vy~~G~n~~gqlG~~~~ 132 (380)
.+++|++|.+--.....++ ...+..-++..+..+ +.+..+.+++|++|++|.+-..+. ..+.
T Consensus 5 ~v~lT~~G~iKr~~~~~~~------------~~~~~lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~el---p~~r- 68 (256)
T 1zvt_A 5 TIVLSQMGWVRSAKGHDID------------APGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITL---PSAR- 68 (256)
T ss_dssp EEEEETTSEEEEEESSCCC------------STTSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGS---CCSS-
T ss_pred EEEEeCCCEEEEeeCCcCC------------ceeccCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHC---CCcC-
Confidence 5677888877554322111 111122244456554 455667899999999999976542 1111
Q ss_pred CceeecCCeeecccCCccEEEEeeC--CCeEEEEecCCcEEEEEeCCCCccCCCCCCCcccccccccccCCCCEEEEE--
Q 016940 133 GTKLVTSPQLVESLKNIFVVQAAIG--NFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIA-- 208 (380)
Q Consensus 133 ~~~~~~~p~~v~~~~~~~i~~i~~g--~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i~-- 208 (380)
..-.+....+...++.+|+.+... ..+.+++|++|.+.-.-...+-...... -.-+.. ..+..++.+.
T Consensus 69 -~~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G------~~~i~L-~~~d~lv~~~~~ 140 (256)
T 1zvt_A 69 -GQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAG------KALITL-PENAHVMPPVVI 140 (256)
T ss_dssp -SCCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTC------EECBCC-CTTCCBCCCEEC
T ss_pred -CCCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCc------eEEEEE-CCCCEEEEEEEe
Confidence 111111112333346678887663 3457778999988855444431111000 000010 1122233322
Q ss_pred -ecCCceEEEEEeCCCCEEEEEecCCCCccCC
Q 016940 209 -AGYCYLLALACQPSGMAVYSVGCGLGGKLGH 239 (380)
Q Consensus 209 -~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~ 239 (380)
.+....+++++ +| .+.-+-.+....+|.
T Consensus 141 ~~~~~~i~l~T~--~G-~~lrf~~~ei~~~gR 169 (256)
T 1zvt_A 141 EDASDMLLAITQ--AG-RMLMFPVSDLPQLSK 169 (256)
T ss_dssp CCTTCEEEEEET--TS-EEEEEEGGGSCBCSS
T ss_pred cCCCCEEEEEcC--CC-eEEEEEHHHCCCcCc
Confidence 24566777776 88 888877666555554
No 122
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=35.62 E-value=3.2e+02 Score=26.64 Aligned_cols=111 Identities=14% Similarity=-0.010 Sum_probs=56.5
Q ss_pred cEEEEEeCCCce--EEEecCCcEEEeeCCCCCCCccCCCCceeecCCeeecccCCccEEEEeeCCC----eEEEEecCCc
Q 016940 96 RIIQAAAGAGRT--MLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNF----FTAVLSREGR 169 (380)
Q Consensus 96 ~I~~V~~g~~~~--~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~----~~~~lt~~G~ 169 (380)
.|..|+...... +.-..||.|..|-... . ...... .... -....|..++...+ ..+.-..+|.
T Consensus 474 ~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~--~-------~~~~~~-~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~d~~ 542 (694)
T 3dm0_A 474 DVLSVAFSLDNRQIVSASRDRTIKLWNTLG--E-------CKYTIS-EGGE-GHRDWVSCVRFSPNTLQPTIVSASWDKT 542 (694)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEECTTS--C-------EEEEEC-SSTT-SCSSCEEEEEECSCSSSCEEEEEETTSC
T ss_pred CEEEEEEeCCCCEEEEEeCCCEEEEEECCC--C-------cceeec-cCCC-CCCCcEEEEEEeCCCCcceEEEEeCCCe
Confidence 577777655443 3345788888884321 1 000000 0000 01122555554332 2344467888
Q ss_pred EEEEEeCCCCccCCCCCCCcccccccccccCCCCEEEEEecCCceEEEEEeCCCCEEEEEec
Q 016940 170 VYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGC 231 (380)
Q Consensus 170 vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~ 231 (380)
|..|-..... ....+. -....|..++...+..++++...|| .|..|-.
T Consensus 543 v~vwd~~~~~-----------~~~~~~--~h~~~v~~v~~spdg~~l~sg~~Dg-~i~iwd~ 590 (694)
T 3dm0_A 543 VKVWNLSNCK-----------LRSTLA--GHTGYVSTVAVSPDGSLCASGGKDG-VVLLWDL 590 (694)
T ss_dssp EEEEETTTCC-----------EEEEEC--CCSSCEEEEEECTTSSEEEEEETTS-BCEEEET
T ss_pred EEEEECCCCc-----------EEEEEc--CCCCCEEEEEEeCCCCEEEEEeCCC-eEEEEEC
Confidence 8888432210 001111 1234588888877766777666688 9999954
No 123
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=34.19 E-value=2.1e+02 Score=24.03 Aligned_cols=48 Identities=6% Similarity=0.196 Sum_probs=25.3
Q ss_pred CCCCEEEEeCCCCCCccCCCCCCccccEEecccCCCcEEEEEecCCeEEEE--eeCCCEEEE
Q 016940 276 QDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVV--SEDGDVYSF 335 (380)
Q Consensus 276 ~~g~vy~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~t~~l--~~~g~v~~w 335 (380)
.+|.|+.|-...... ...+.. ....|..++...+..+++ ..||.|..|
T Consensus 262 ~d~~i~iwd~~~~~~-----------~~~l~g-H~~~V~~l~~spdg~~l~S~s~D~~v~iW 311 (318)
T 4ggc_A 262 AQNQLVIWKYPTMAK-----------VAELKG-HTSRVLSLTMSPDGATVASAAADETLRLW 311 (318)
T ss_dssp TTCCEEEEETTTCCE-----------EEEECC-CSSCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred CCCEEEEEECCCCcE-----------EEEEcC-CCCCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence 688999996533111 112221 123566666544333333 357888888
No 124
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=33.97 E-value=2.6e+02 Score=25.10 Aligned_cols=143 Identities=13% Similarity=0.025 Sum_probs=70.6
Q ss_pred CCeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeCCCceE--EEecCCcEEEeeCCCCCCCcc
Q 016940 52 PGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTM--LISDAGQVYAFGKDSFGEAEY 129 (380)
Q Consensus 52 ~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g~~~~~--~lt~~G~vy~~G~n~~gqlG~ 129 (380)
....+++--|+.||.|-... |+ ......+.. ....|..|+...+..+ .-+.||.|..|-......+
T Consensus 115 ~~n~lAvgld~tV~lWd~~t-g~--------~~~~~~~~~-~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~-- 182 (420)
T 4gga_A 115 SGNVLAVALDNSVYLWSASS-GD--------ILQLLQMEQ-PGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL-- 182 (420)
T ss_dssp TTSEEEEEETTEEEEEETTT-CC--------EEEEEECCS-TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE--
T ss_pred CCCEEEEEeCCEEEEEECCC-CC--------EEEEEEecC-CCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEE--
Confidence 34567777799999996432 11 011111111 1235888877655433 3357888888865321110
Q ss_pred CCCCceeecCCeeecccCCccEEEEeeCCCeEEEEecCCcEEEEEeCCCCccCCCCCCCcccccccccccCCCCEEEEEe
Q 016940 130 GVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAA 209 (380)
Q Consensus 130 ~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i~~ 209 (380)
..+. .....+..++......+.-..++.++.|-..... .....+. .....+..+..
T Consensus 183 -----------~~~~-~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~----------~~~~~~~--~h~~~~~~~~~ 238 (420)
T 4gga_A 183 -----------RNMT-SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAE----------HHVATLS--GHSQEVCGLRW 238 (420)
T ss_dssp -----------EEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSS----------CEEEEEE--CCSSCEEEEEE
T ss_pred -----------EEEe-CCCCceEEEeeCCCEEEEEeCCCceeEeeecccc----------eeeEEec--ccccceeeeee
Confidence 0011 1123455565555555555667777766322110 0000111 12233555555
Q ss_pred cCCceEEEEEeCCCCEEEEEec
Q 016940 210 GYCYLLALACQPSGMAVYSVGC 231 (380)
Q Consensus 210 g~~~~~~l~~~~~G~~vy~~G~ 231 (380)
......+++...|| .+..|-.
T Consensus 239 ~~~g~~l~s~~~D~-~v~i~~~ 259 (420)
T 4gga_A 239 APDGRHLASGGNDN-LVNVWPS 259 (420)
T ss_dssp CTTSSEEEEEETTS-CEEEEES
T ss_pred cCCCCeeeeeeccc-cceEEee
Confidence 55555555554577 8888854
No 125
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=33.92 E-value=2e+02 Score=23.67 Aligned_cols=16 Identities=19% Similarity=0.171 Sum_probs=10.7
Q ss_pred eEEEEeCCCCEEEEeC
Q 016940 270 HAAVVGQDGRVCTWGW 285 (380)
Q Consensus 270 h~~~lt~~g~vy~wG~ 285 (380)
..++++.+|.+|+-..
T Consensus 195 ~~i~~d~~g~l~v~~~ 210 (270)
T 1rwi_B 195 WGIAVDEAGTVYVTEH 210 (270)
T ss_dssp EEEEECTTCCEEEEET
T ss_pred eEEEECCCCCEEEEEC
Confidence 4567777777776554
No 126
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=33.62 E-value=2.6e+02 Score=25.03 Aligned_cols=102 Identities=9% Similarity=0.049 Sum_probs=49.4
Q ss_pred CceEEEecCCcEEEeeCCCCCCCccCCCCceeecCCeeeccc-CCccEEEEeeCCC--eEEEEecCCcEEEEEeCCCCcc
Q 016940 105 GRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESL-KNIFVVQAAIGNF--FTAVLSREGRVYTFSWGNDARL 181 (380)
Q Consensus 105 ~~~~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~~~p~~v~~~-~~~~i~~i~~g~~--~~~~lt~~G~vy~~G~n~~gql 181 (380)
...+.-+.||.|+.|-.... ++ ...+... ....|..++...+ ..+.-..+|.|..|-... +
T Consensus 183 ~~l~~~~~d~~i~iwd~~~~-~~------------~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~-- 246 (437)
T 3gre_A 183 SLLVALTNLSRVIIFDIRTL-ER------------LQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRF-N-- 246 (437)
T ss_dssp EEEEEEETTSEEEEEETTTC-CE------------EEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTT-T--
T ss_pred CEEEEEeCCCeEEEEeCCCC-ee------------eEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCC-c--
Confidence 34455567788888865321 10 0011110 1234666666433 344456788888884322 0
Q ss_pred CCCCCCCcccccccccccCCCCEEEEEecC----CceEEEEEeCCCCEEEEEecC
Q 016940 182 GHHTEPNDVEPHPLLGTLENIPVVQIAAGY----CYLLALACQPSGMAVYSVGCG 232 (380)
Q Consensus 182 g~~~~~~~~~p~~v~~~~~~~~i~~i~~g~----~~~~~l~~~~~G~~vy~~G~n 232 (380)
.+..........+|..++... +..++++...|| .|+.|-..
T Consensus 247 ---------~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg-~i~iwd~~ 291 (437)
T 3gre_A 247 ---------VLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKT-FLTIWNFV 291 (437)
T ss_dssp ---------EEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTE-EEEEEETT
T ss_pred ---------cEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCC-cEEEEEcC
Confidence 111100001123466664443 233555555577 89999643
No 127
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=33.52 E-value=2.6e+02 Score=24.92 Aligned_cols=82 Identities=9% Similarity=-0.129 Sum_probs=40.5
Q ss_pred CCEEEEEecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEccCc--eEEEEeCCCC
Q 016940 202 IPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAW--HAAVVGQDGR 279 (380)
Q Consensus 202 ~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~--h~~~lt~~g~ 279 (380)
..|..++...+...+++...|| .|..|-.......... ...........+......|..++...+ ..+.-..+|.
T Consensus 257 ~~v~~v~~~~~g~~l~s~s~d~-~v~~wd~~~~~~~~~~--~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~ 333 (393)
T 1erj_A 257 DSVYSVVFTRDGQSVVSGSLDR-SVKLWNLQNANNKSDS--KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG 333 (393)
T ss_dssp SCEEEEEECTTSSEEEEEETTS-EEEEEEC-----------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSE
T ss_pred CCEEEEEECCCCCEEEEEeCCC-EEEEEECCCCCCcccc--cCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCe
Confidence 4588888776666666666688 9999964322111100 000011111122223334555555433 4445567888
Q ss_pred EEEEeCC
Q 016940 280 VCTWGWG 286 (380)
Q Consensus 280 vy~wG~n 286 (380)
|+.|-..
T Consensus 334 v~iwd~~ 340 (393)
T 1erj_A 334 VLFWDKK 340 (393)
T ss_dssp EEEEETT
T ss_pred EEEEECC
Confidence 9999653
No 128
>3q7x_A De novo designed beta-trefoil architecture with S primary structure; beta-terfoil, de novo protein; 1.40A {Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A 3o4a_A* 3o49_A
Probab=33.12 E-value=1.6e+02 Score=22.41 Aligned_cols=100 Identities=15% Similarity=0.161 Sum_probs=52.1
Q ss_pred EecCCCeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEe-CCCceEEEecCCcEEEeeCCCCCC
Q 016940 48 AIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAA-GAGRTMLISDAGQVYAFGKDSFGE 126 (380)
Q Consensus 48 i~~G~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~-g~~~~~~lt~~G~vy~~G~n~~gq 126 (380)
-.|...+.+-+..||+|-.-.... +.........+. . .++.|.. ...+.+.+..+|+||.--...
T Consensus 11 ~~~~~g~~L~I~~dG~V~Gt~~~~-------~~~s~l~~~~v~--~--G~V~I~g~~sg~yL~m~~~G~v~Gs~~~s--- 76 (132)
T 3q7x_A 11 RSTETGQFLRINPDGTVDGTRDRS-------DPGIQFQISPEG--N--GEVLLRSTETGQFLRINPDGTVDGTRDRS--- 76 (132)
T ss_dssp EETTTCCEEEECTTSBEEEECCTT-------CGGGCEEEEEEE--T--TEEEEEETTTCCEEEECTTSBEEEECC-C---
T ss_pred eeccCcEEEEECCCCcEEeecCCC-------CCCcEEEEEecc--c--CEEEEEEEcccEEEEECCCCCEeeccCCC---
Confidence 467777888889999998654221 001111222222 1 2455543 344678889999999753211
Q ss_pred CccCCCCceeecCCeee-cccCCccEEEEeeCCCeEEEEecCCcEE
Q 016940 127 AEYGVQGTKLVTSPQLV-ESLKNIFVVQAAIGNFFTAVLSREGRVY 171 (380)
Q Consensus 127 lG~~~~~~~~~~~p~~v-~~~~~~~i~~i~~g~~~~~~lt~~G~vy 171 (380)
. .......+ .......|+.+..| ..++++.+|++|
T Consensus 77 -------~-ec~flE~~~~~~g~v~ikg~~sg--~YLamnk~G~ly 112 (132)
T 3q7x_A 77 -------D-PGIQFQISPEGNGEVLLRSTETG--QFLRINPDGTVD 112 (132)
T ss_dssp -------C-GGGCEEEEEEETTEEEEEETTTC--CEEEECTTSBEE
T ss_pred -------C-CceeEEEEeecCcEEEEEeccCC--eEEEECCCCcCc
Confidence 0 01111111 11111223333334 488999999999
No 129
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=32.93 E-value=2.5e+02 Score=24.66 Aligned_cols=113 Identities=13% Similarity=0.040 Sum_probs=61.5
Q ss_pred cEEEEeeCC-CeEEEEecCCcEEEEEeCCCCccCCCCCCCcccccccccccCCCCEEEEEecCCceEEEEEeCCCCEEEE
Q 016940 150 FVVQAAIGN-FFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYS 228 (380)
Q Consensus 150 ~i~~i~~g~-~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~ 228 (380)
.|..++... ...+.-..+|.|..|-......+ ... +....--...|..++...+-..+++...|| .|..
T Consensus 84 ~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~--------~~~-~~~~~~H~~~V~~v~~spdg~~l~sgs~d~-~i~i 153 (344)
T 4gqb_B 84 GVADLTWVGERGILVASDSGAVELWELDENETL--------IVS-KFCKYEHDDIVSTVSVLSSGTQAVSGSKDI-CIKV 153 (344)
T ss_dssp CEEEEEEETTTEEEEEETTSEEEEEEECTTSSC--------EEE-EEEEECCSSCEEEEEECTTSSEEEEEETTS-CEEE
T ss_pred CEEEEEEeCCCeEEEEECCCEEEEEeccCCCce--------eEe-eccccCCCCCEEEEEECCCCCEEEEEeCCC-eEEE
Confidence 366666443 34455567888988844321110 000 000001134588888777766666666688 9999
Q ss_pred EecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEccCc---eEEEEeCCCCEEEEeCC
Q 016940 229 VGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAW---HAAVVGQDGRVCTWGWG 286 (380)
Q Consensus 229 ~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~---h~~~lt~~g~vy~wG~n 286 (380)
|-... ...+..+......|..++.... ..+.-..||.|..|-..
T Consensus 154 wd~~~--------------~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~ 200 (344)
T 4gqb_B 154 WDLAQ--------------QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTR 200 (344)
T ss_dssp EETTT--------------TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred EECCC--------------CcEEEEEcCcCCceEEEEecCCCCCceeeecccccccccccc
Confidence 94321 2333334334445666655332 23445678999999543
No 130
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=32.39 E-value=2.6e+02 Score=24.56 Aligned_cols=229 Identities=11% Similarity=0.048 Sum_probs=114.9
Q ss_pred CCCcEEE--EEeCCCceEEEecCCcEEEeeCCCCCCCccCCCCceeecCCeeecccCCccEEEEee-----CCCeEEEEe
Q 016940 93 QGIRIIQ--AAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAI-----GNFFTAVLS 165 (380)
Q Consensus 93 ~~~~I~~--V~~g~~~~~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~-----g~~~~~~lt 165 (380)
++..+.. ++.+.++.+++|+.|++|.+-..+--..+.. ..-.+....+...++.+|+.+.. .....+++|
T Consensus 40 e~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~---a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T 116 (307)
T 1zi0_A 40 EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG---ARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMAT 116 (307)
T ss_dssp --CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS---SCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEE
T ss_pred CCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC---CCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEe
Confidence 3445544 4566778899999999999976543333221 11121112223334666777654 223577789
Q ss_pred cCCcEEEEEeCCCCccCCCCCCCcccccccccccCCCCEEEEE--ecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCC
Q 016940 166 REGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIA--AGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRT 243 (380)
Q Consensus 166 ~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i~--~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~ 243 (380)
++|.+.-.-...+..... ..-.-+.. ..+..++.+. .+....+++++ +| .++-+-...-..+|.....
T Consensus 117 ~~G~~Krt~l~e~~~~~r------~G~~~i~l-~~~d~lv~~~~~~~~~~i~l~T~--~G-~~irf~~~~v~~~gr~a~G 186 (307)
T 1zi0_A 117 ANGTVKKTVLTEFNRLRT------AGKVAIKL-VDGDELIGVDLTSGEDEVMLFSA--EG-KVVRFKESSVRAMGCNTTG 186 (307)
T ss_dssp TTSEEEEEEGGGGTTCCT------TCEESSCC-CTTCCEEEEEEECTTCEEEEEET--TS-EEEEEEGGGSCBCCTTCCC
T ss_pred CCCeEEEEEHHHhhcccc------CCeEEEEE-CCCCEEEEEEEeCCCCEEEEECC--CC-cEEEEEHHHcCccCCCCCC
Confidence 999887543332221110 00000111 1233454432 34556777776 88 9888876655554442221
Q ss_pred CCCCCeeeeeeecCCCccEEEEcc--CceEEEEeCCCCEEEEeCCCCCCccCCCCCCccccEEecccC--CCcEEEEEe-
Q 016940 244 DEKHPRLIEQFQLLNLQPVVVAAG--AWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALN--DVKAIHVAT- 318 (380)
Q Consensus 244 ~~~~p~~~~~~~~~~~~i~~i~~G--~~h~~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~p~~i~~~~--~~~i~~i~~- 318 (380)
.....+. .+..|+.+..- ....+++|++|.+--.-..+|..-+.+. .-.....+. +..++.+..
T Consensus 187 -----v~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~-----kG~~~~~~~~~~~~lv~~~~v 255 (307)
T 1zi0_A 187 -----VRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRAT-----KGVISIKVTERNGLVVGAVQV 255 (307)
T ss_dssp -----EECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTS-----CCEESSCCCTTTCSEEEEEEE
T ss_pred -----eEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCC-----CCEEeeEecCCCCeEEEEEEe
Confidence 1111121 34456665432 2346677777765544333332111111 111111121 124444333
Q ss_pred -cCCeEEEEeeCCCEEEEECCCCCCCCC
Q 016940 319 -GDYTTFVVSEDGDVYSFGCGESASLGH 345 (380)
Q Consensus 319 -G~~~t~~l~~~g~v~~wG~n~~gqlG~ 345 (380)
.....++++++|++...-.++-...|.
T Consensus 256 ~~~~~l~~~t~~g~~ir~~~~~i~~~~R 283 (307)
T 1zi0_A 256 DDCDQIMMITDAGTLVRTRVSEISIVGR 283 (307)
T ss_dssp CTTCEEEEEESSCCEEEEEGGGSCBCCS
T ss_pred CCCceEEEEcCCCcEEEEecccccccCc
Confidence 566788899999998886665544443
No 131
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=30.17 E-value=2.3e+02 Score=26.69 Aligned_cols=67 Identities=9% Similarity=0.145 Sum_probs=42.8
Q ss_pred eeceEE-----ecCCCeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCC--------CCCcEEEEEeCCC--ce
Q 016940 43 RENSQA-----IAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSL--------QGIRIIQAAAGAG--RT 107 (380)
Q Consensus 43 ~~i~~i-----~~G~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~--------~~~~I~~V~~g~~--~~ 107 (380)
.+|++| +....+.++|++|+.|..|--.. ....|..++.. ....|.+++.|.. .-
T Consensus 125 s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~----------s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTL 194 (452)
T 3pbp_A 125 SSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN----------SQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTL 194 (452)
T ss_dssp CCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC----------TTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCE
T ss_pred CceeEEEeccccCCCCeEEEEecCCEEEEEEccc----------CCCCCcchhccccccCCCcccceEEEEEEcCCCcEE
Confidence 356666 44566889999999999998664 11222222211 1147888887764 23
Q ss_pred EEEe--cCCcEEEe
Q 016940 108 MLIS--DAGQVYAF 119 (380)
Q Consensus 108 ~~lt--~~G~vy~~ 119 (380)
++++ +.|.||+.
T Consensus 195 Yvl~~t~~GDIYAl 208 (452)
T 3pbp_A 195 YCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEECTTSCEEEEE
T ss_pred EEEecCCCCCEEEE
Confidence 5545 78999996
No 132
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=29.48 E-value=3e+02 Score=24.41 Aligned_cols=224 Identities=13% Similarity=0.003 Sum_probs=113.9
Q ss_pred EecCCCeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeCC-----CceEEEecCCcEEEeeCC
Q 016940 48 AIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGA-----GRTMLISDAGQVYAFGKD 122 (380)
Q Consensus 48 i~~G~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g~-----~~~~~lt~~G~vy~~G~n 122 (380)
++...++.+++|+.|++|..-...--..+....- ......++...+++|+.+..-. .+.+++|++|.+--.-..
T Consensus 46 ~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G-~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~ 124 (323)
T 1wp5_A 46 EMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLG-QHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELK 124 (323)
T ss_dssp EEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCC-EEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGG
T ss_pred EECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCC-cChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHH
Confidence 5677889999999999999875542222211100 0011122333566788764432 357888999987776544
Q ss_pred CCCCCccCCCCceeecCCeee-cccCCccEEEE--eeCCCeEEEEecCCcEEEEEeCCCCccCCCCCCCccccccccccc
Q 016940 123 SFGEAEYGVQGTKLVTSPQLV-ESLKNIFVVQA--AIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTL 199 (380)
Q Consensus 123 ~~gqlG~~~~~~~~~~~p~~v-~~~~~~~i~~i--~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~ 199 (380)
++-.... ...... ...++..++.+ ..+.++.+++|++|+++-+-...-..+|....... .+.. .
T Consensus 125 e~~~~~r--------~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~----~i~L-~ 191 (323)
T 1wp5_A 125 HYKAQRY--------SKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVK----GMNL-K 191 (323)
T ss_dssp GGCCSCC--------SSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEE----CCCC-C
T ss_pred Hhhhccc--------cCceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEE----EEEe-C
Confidence 3321110 001111 11123344433 34677899999999999877666544544322211 1111 2
Q ss_pred CCCCEEEEEecC--C-ceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEE--EEccCceEEEE
Q 016940 200 ENIPVVQIAAGY--C-YLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVV--VAAGAWHAAVV 274 (380)
Q Consensus 200 ~~~~i~~i~~g~--~-~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~--i~~G~~h~~~l 274 (380)
.+..|+.+..-. . ..+.++. +| ...-.-...+..-+++.... ..+. .+...+..++. +..+.+..+++
T Consensus 192 ~~d~Vv~~~~~~~~~~~ll~vt~--~G-~gKr~~~~e~~~~~Rg~kGv-~~~~---~~~~~~~~l~~~~~v~~~~~i~~i 264 (323)
T 1wp5_A 192 EGDYIVSGQLITSKDESIVVATQ--RG-AVKKMKLTEFEKATRAKRGV-VILR---ELKANPHRISGFVVAQDSDTIYLQ 264 (323)
T ss_dssp TTCCEEEEEEECCTTCEEEEEET--TS-EEEEEEGGGSCCCCTTSCCE-ECSC---CCSSSCCCEEEEEEECTTCEEEEE
T ss_pred CCCEEEEEEEEcCCCcEEEEEEC--CC-ceEEEEHHHccccCCCCCCE-ECee---ecCCCCceEEEEEEeCCCCeEEEE
Confidence 344566654322 2 3445554 66 54443333332222221110 0011 11111223332 23456788999
Q ss_pred eCCCCEEEEeCCCCCCcc
Q 016940 275 GQDGRVCTWGWGRYGCLG 292 (380)
Q Consensus 275 t~~g~vy~wG~n~~gqLG 292 (380)
|++|++...-.+.....|
T Consensus 265 t~~g~~ir~~~~~i~~~~ 282 (323)
T 1wp5_A 265 TEKSFIETIKVGDIRFSD 282 (323)
T ss_dssp ETTSCEEEEEGGGSCBCC
T ss_pred eCCCeEEEEEhhhcCccC
Confidence 999999887766655444
No 133
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=28.83 E-value=3.1e+02 Score=24.42 Aligned_cols=27 Identities=15% Similarity=0.059 Sum_probs=19.2
Q ss_pred cEEEEEeCCC---ceEEEecCCcEEEeeCC
Q 016940 96 RIIQAAAGAG---RTMLISDAGQVYAFGKD 122 (380)
Q Consensus 96 ~I~~V~~g~~---~~~~lt~~G~vy~~G~n 122 (380)
.|..++.... ..+.-..||.|..|-..
T Consensus 228 ~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~ 257 (447)
T 3dw8_B 228 VITAAEFHPNSCNTFVYSSSKGTIRLCDMR 257 (447)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred ceEEEEECCCCCcEEEEEeCCCeEEEEECc
Confidence 6888887654 34455678999999754
No 134
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=28.44 E-value=1.6e+02 Score=25.40 Aligned_cols=18 Identities=17% Similarity=0.002 Sum_probs=12.6
Q ss_pred CceEEEEeCCCCEEEEeCC
Q 016940 268 AWHAAVVGQDGRVCTWGWG 286 (380)
Q Consensus 268 ~~h~~~lt~~g~vy~wG~n 286 (380)
..|+++. .++++|++|-.
T Consensus 140 ~~~~~~~-~~~~iyv~GG~ 157 (315)
T 4asc_A 140 YGHTVLS-HMDLVYVIGGK 157 (315)
T ss_dssp BSCEEEE-ETTEEEEECCB
T ss_pred cceeEEE-ECCEEEEEeCC
Confidence 3466555 57899999964
No 135
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=26.54 E-value=3.2e+02 Score=23.83 Aligned_cols=26 Identities=15% Similarity=-0.110 Sum_probs=13.9
Q ss_pred EEEEEecCCce-EEEEEeCCCCEEEEEe
Q 016940 204 VVQIAAGYCYL-LALACQPSGMAVYSVG 230 (380)
Q Consensus 204 i~~i~~g~~~~-~~l~~~~~G~~vy~~G 230 (380)
+..++...+.. ++++...+| .|+.|-
T Consensus 160 ~~~~~~~~dg~~l~~~~~~~~-~v~~~d 186 (391)
T 1l0q_A 160 PKGIAVTPDGTKVYVANFDSM-SISVID 186 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTT-EEEEEE
T ss_pred cceEEECCCCCEEEEEeCCCC-EEEEEE
Confidence 45555554432 334443466 888884
No 136
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=22.92 E-value=4.8e+02 Score=26.14 Aligned_cols=162 Identities=14% Similarity=0.079 Sum_probs=79.0
Q ss_pred CCCeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEE--EeCCCceEEEecCCcEEEeeCCCCCCCc
Q 016940 51 GPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQA--AAGAGRTMLISDAGQVYAFGKDSFGEAE 128 (380)
Q Consensus 51 G~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V--~~g~~~~~~lt~~G~vy~~G~n~~gqlG 128 (380)
-..-.+.++.+|-+-..|. .+. . +..+....+..+..+ +...++.+++|+.|++|..-...--.
T Consensus 471 ~e~v~v~ls~~GyiKr~~g-------~~~-~----~~~~~~k~~D~~~~~~~~~t~d~ll~ft~~Gr~y~~~~~~lP~-- 536 (716)
T 1zvu_A 471 SEPVTIVLSQMGWVRSAKG-------HDI-D----APGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS-- 536 (716)
T ss_dssp CCCCCEEEETTTEEEECCC---------------------------CCEEECCCSSSCEEEEETTSEEEEECTTTSCC--
T ss_pred CceEEEEEecCCeEeccCC-------CCc-C----ccccccCCCCeEEEEEEecCCCEEEEEecCCcEEEEEeeeccc--
Confidence 4455678888887755321 110 0 011111133344444 34455578999999999987543222
Q ss_pred cCCCCceeecCCeeecccCCccEEEEeeC--CCeEEEEecCCcEEEEEeCCCCccCCCCCCCcccccccccccCCCCEEE
Q 016940 129 YGVQGTKLVTSPQLVESLKNIFVVQAAIG--NFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQ 206 (380)
Q Consensus 129 ~~~~~~~~~~~p~~v~~~~~~~i~~i~~g--~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~ 206 (380)
+. ....+....+...++.+|..+... ..+.++.|++|.+.-.-...+.. .....-.-+.. ..+..++.
T Consensus 537 -~~--~~G~~i~~ll~l~~~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~~~~~------~~~~g~~ai~L-~~~d~lv~ 606 (716)
T 1zvu_A 537 -AR--GQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVA------RNRAGKALITL-PENAHVMP 606 (716)
T ss_dssp -CC-----CBSTTTSCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCC------CSTTCEECBCC-CTTCCBCC
T ss_pred -cc--ccCeeHHhccCCCCCCeEEEEEEecCCceEEEEeCCceEEEecHHHhcc------cCccceEEEee-CCCCEEEE
Confidence 11 222223333333456778887765 33567789999888554333210 00000001111 12222332
Q ss_pred E--E-ecCCceEEEEEeCCCCEEEEEecCCCCccCC
Q 016940 207 I--A-AGYCYLLALACQPSGMAVYSVGCGLGGKLGH 239 (380)
Q Consensus 207 i--~-~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~ 239 (380)
+ . .+..+.++++. +| .+..+-.+.-..+|.
T Consensus 607 ~~~~~~~~~~v~l~t~--~g-~~lrf~~~~v~~~gr 639 (716)
T 1zvu_A 607 PVVIEDASDMLLAITQ--AG-RMLMFPVSDLPQLSK 639 (716)
T ss_dssp CEECCCTTCEEEEEET--TS-EEEEEESTTSCBCSS
T ss_pred EEEecCCCCEEEEEeC--CC-eEEEEEHHHCCccCc
Confidence 2 1 35666777776 88 888887665544444
No 137
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=22.82 E-value=3.5e+02 Score=22.93 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=12.2
Q ss_pred ceEEEEeCCCCEEEEeCC
Q 016940 269 WHAAVVGQDGRVCTWGWG 286 (380)
Q Consensus 269 ~h~~~lt~~g~vy~wG~n 286 (380)
.|++++. +++||++|-.
T Consensus 94 ~~~~~~~-~~~iyv~GG~ 110 (306)
T 3ii7_A 94 SLAACAA-EGKIYTSGGS 110 (306)
T ss_dssp SCEEEEE-TTEEEEECCB
T ss_pred ceeEEEE-CCEEEEECCC
Confidence 4555554 7899999864
No 138
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=22.41 E-value=3.5e+02 Score=22.83 Aligned_cols=236 Identities=12% Similarity=-0.038 Sum_probs=0.0
Q ss_pred eEEecCCCeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeCCCceEEEe--cCCcEEEeeCCC
Q 016940 46 SQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLIS--DAGQVYAFGKDS 123 (380)
Q Consensus 46 ~~i~~G~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g~~~~~~lt--~~G~vy~~G~n~ 123 (380)
..++......+.-..||.|..| +.........+....+ .|..|+......++++ .||.|..|
T Consensus 61 ~~~~~~~~~l~s~s~d~~i~vw-----------d~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~sgs~D~~v~lW---- 124 (304)
T 2ynn_A 61 GKFIARKNWIIVGSDDFRIRVF-----------NYNTGEKVVDFEAHPD-YIRSIAVHPTKPYVLSGSDDLTVKLW---- 124 (304)
T ss_dssp EEEEGGGTEEEEEETTSEEEEE-----------ETTTCCEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEE----
T ss_pred EEEeCCCCEEEEECCCCEEEEE-----------ECCCCcEEEEEeCCCC-cEEEEEEcCCCCEEEEECCCCeEEEE----
Q ss_pred CCCCccCCCCceeecCCeeecccCCccEEEEee---CCCeEEEEecCCcEEEEEeCCCCccCCCCCCCcccccccccccC
Q 016940 124 FGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAI---GNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLE 200 (380)
Q Consensus 124 ~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~---g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~ 200 (380)
.......+.....-....|..++. .....+.-..||.|..| .................
T Consensus 125 ---------d~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iw----------d~~~~~~~~~~~~~~~~ 185 (304)
T 2ynn_A 125 ---------NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW----------SLGQSTPNFTLTTGQER 185 (304)
T ss_dssp ---------EGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEE----------ETTCSSCSEEEECCCTT
T ss_pred ---------ECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEE----------ECCCCCccceeccCCcC
Q ss_pred CCCEEEEEecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEccCce--EEEEeCCC
Q 016940 201 NIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWH--AAVVGQDG 278 (380)
Q Consensus 201 ~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~h--~~~lt~~g 278 (380)
......+....+..++++...|| .|..| +......+..+......|..++..... .+.-..+|
T Consensus 186 ~v~~~~~~~~~~~~~l~s~s~D~-~i~iW--------------d~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg 250 (304)
T 2ynn_A 186 GVNYVDYYPLPDKPYMITASDDL-TIKIW--------------DYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG 250 (304)
T ss_dssp CEEEEEECCSTTCCEEEEEETTS-EEEEE--------------ETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTS
T ss_pred cEEEEEEEEcCCCCEEEEEcCCC-eEEEE--------------eCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCC
Q ss_pred CEEEEeCCCCCCccCCCCCCccccEEecccCCCcEEEEEecCCeEEEEeeCCC
Q 016940 279 RVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGD 331 (380)
Q Consensus 279 ~vy~wG~n~~gqLG~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~t~~l~~~g~ 331 (380)
.|..|-......+..-...............+....-+++.++...++.-..+
T Consensus 251 ~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~~~~ 303 (304)
T 2ynn_A 251 TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGND 303 (304)
T ss_dssp CEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEEEECC--
T ss_pred eEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCceEEEEeccC
No 139
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=21.79 E-value=6.2e+02 Score=25.39 Aligned_cols=123 Identities=14% Similarity=0.151 Sum_probs=67.0
Q ss_pred ecCCCeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeCC--CceEEEecCCcEEEeeCCCCCC
Q 016940 49 IAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGA--GRTMLISDAGQVYAFGKDSFGE 126 (380)
Q Consensus 49 ~~G~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g~--~~~~~lt~~G~vy~~G~n~~gq 126 (380)
+...+..+++|+.|++|..-...--. +...-......++...+.+|+.+.... .+.++.|++|.+.-.-...+-.
T Consensus 511 ~~t~d~ll~ft~~Gr~y~~~~~~lP~---~~~~G~~i~~ll~l~~~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~~~~~ 587 (716)
T 1zvu_A 511 GKSNQPVVFVDSTGRSYAIDPITLPS---ARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVA 587 (716)
T ss_dssp CCSSSCEEEEETTSEEEEECTTTSCC---CC---CBSTTTSCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCC
T ss_pred ecCCCEEEEEecCCcEEEEEeeeccc---ccccCeeHHhccCCCCCCeEEEEEEecCCceEEEEeCCceEEEecHHHhcc
Confidence 44456678899999999876443211 111111111222333567898887653 3567778899887765433211
Q ss_pred CccCCCCceeecCCeeeccc-CCccEEE--Ee-eCCCeEEEEecCCcEEEEEeCCCCccCC
Q 016940 127 AEYGVQGTKLVTSPQLVESL-KNIFVVQ--AA-IGNFFTAVLSREGRVYTFSWGNDARLGH 183 (380)
Q Consensus 127 lG~~~~~~~~~~~p~~v~~~-~~~~i~~--i~-~g~~~~~~lt~~G~vy~~G~n~~gqlg~ 183 (380)
.- ..-...-.+ .+..++. .. .+.++.+++|++|++..+-...--.+|.
T Consensus 588 ~~---------~~g~~ai~L~~~d~lv~~~~~~~~~~~v~l~t~~g~~lrf~~~~v~~~gr 639 (716)
T 1zvu_A 588 RN---------RAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK 639 (716)
T ss_dssp CS---------TTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEESTTSCBCSS
T ss_pred cC---------ccceEEEeeCCCCEEEEEEEecCCCCEEEEEeCCCeEEEEEHHHCCccCc
Confidence 10 001111111 2233332 22 4677899999999999887666444444
No 140
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=20.92 E-value=5.9e+02 Score=24.84 Aligned_cols=159 Identities=13% Similarity=0.019 Sum_probs=81.6
Q ss_pred cEEEEeeCCC--eEEEEecCCcEEEEEeCCCCccCCCCCCCcccccccccccCCCCEEEEEecCCceEEEEEeCCCCEEE
Q 016940 150 FVVQAAIGNF--FTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVY 227 (380)
Q Consensus 150 ~i~~i~~g~~--~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy 227 (380)
.|..++-..+ ..++.+.+|.|..|.. .+.+.... . ..+.....+..++-+.+--...+..+|| +|-
T Consensus 87 ~V~~vawSPdG~~LAs~s~dg~V~iwd~--~~~l~~l~-~--------~~~~~~~sv~svafSPDG~~LAsgs~DG-tVk 154 (588)
T 2j04_A 87 YPRVCKPSPIDDWMAVLSNNGNVSVFKD--NKMLTNLD-S--------KGNLSSRTYHCFEWNPIESSIVVGNEDG-ELQ 154 (588)
T ss_dssp CEEEEEECSSSSCEEEEETTSCEEEEET--TEEEEECC-C--------SSCSTTTCEEEEEECSSSSCEEEEETTS-EEE
T ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEeC--Cceeeecc-C--------CCccccccEEEEEEcCCCCEEEEEcCCC-EEE
Confidence 3666665443 4566788999998851 11111110 0 0001122366776665544444444588 999
Q ss_pred EEecCCCCccCCCCCCCCCCC--eeeeee----ecCCCccEEEEccCceEEEEeCCCCEEEEeCCCCCCccCCCCCCccc
Q 016940 228 SVGCGLGGKLGHGSRTDEKHP--RLIEQF----QLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESV 301 (380)
Q Consensus 228 ~~G~n~~gqlg~~~~~~~~~p--~~~~~~----~~~~~~i~~i~~G~~h~~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~ 301 (380)
.|-.... ....| ..+..+ ......|..|+-..+..++-..|+.++.|-...... ...
T Consensus 155 IWd~~~~---------~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdgLaass~D~tVrlWd~~~~~~--------~~~ 217 (588)
T 2j04_A 155 FFSIRKN---------SENTPEFYFESSIRLSDAGSKDWVTHIVWYEDVLVAALSNNSVFSMTVSASSH--------QPV 217 (588)
T ss_dssp EEECCCC---------TTTCCCCEEEEEEECSCTTCCCCEEEEEEETTEEEEEETTCCEEEECCCSSSS--------CCC
T ss_pred EEECCCC---------ccccccceeeeeeecccccccccEEEEEEcCCcEEEEeCCCeEEEEECCCCcc--------ccc
Confidence 9964321 01112 122222 112235667766555555667788899997544221 111
Q ss_pred cEEecccCCCcEEEEEecCCeEEEEeeCCCEEEEECC
Q 016940 302 PKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCG 338 (380)
Q Consensus 302 p~~i~~~~~~~i~~i~~G~~~t~~l~~~g~v~~wG~n 338 (380)
+..+.......|.+|+.. ...+|...+++|..|-..
T Consensus 218 ~~tL~~~h~~~V~svaFs-g~~LASa~~~tIkLWd~~ 253 (588)
T 2j04_A 218 SRMIQNASRRKITDLKIV-DYKVVLTCPGYVHKIDLK 253 (588)
T ss_dssp EEEEECCCSSCCCCEEEE-TTEEEEECSSEEEEEETT
T ss_pred eeeecccccCcEEEEEEE-CCEEEEEeCCeEEEEECC
Confidence 222321222345454443 367777778899999754
Done!