BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016941
(380 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WS7|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS8|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
Length = 109
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 51/96 (53%)
Query: 28 VGGKHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKPLLK 87
VG GW T +Y KW+ N+F V D+L F Y +VL V+++ + SCN+ P
Sbjct: 7 VGDSTGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAAS 66
Query: 88 LDSGDSEFKLDRSGPFYFISGNHDHCQKGQKLIVVV 123
SG L R G FYF+ G HCQ GQK+ + V
Sbjct: 67 YTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKV 102
>pdb|1X9R|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9R|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9U|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
pdb|1X9U|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
Length = 116
Score = 60.1 bits (144), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Query: 26 FNVGGKHGWV--TNPGENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKK 83
++VGG W ++P + Y W+ F V D L F + G V +V KD +D+C +
Sbjct: 4 YDVGGDMEWKRPSDP-KFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKEN 62
Query: 84 PLLKLDSGDSEFKLDRSGPFYFISGNHDHCQKGQKLIVVVL 124
P+ + + + L+ +GP Y+I DHC+ GQKL + V+
Sbjct: 63 PISHMTTPPVKIMLNTTGPQYYICTVGDHCRVGQKLSINVV 103
>pdb|2CBP|A Chain A, Cucumber Basic Protein, A Blue Copper Protein
Length = 96
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
Query: 28 VGGKHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKPLLK 87
VGG GW N W RF D L F Y +V++VN+ + +CNT
Sbjct: 5 VGGSGGWTFN----TESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGAKV 60
Query: 88 LDSGDSEFKLDRSGPFYFISGNHDHCQKGQKLIVVVL 124
SG + KL + G YFI HCQ G K+ V L
Sbjct: 61 YTSGRDQIKLPK-GQSYFICNFPGHCQSGMKIAVNAL 96
>pdb|1F56|A Chain A, Spinach Plantacyanin
pdb|1F56|B Chain B, Spinach Plantacyanin
pdb|1F56|C Chain C, Spinach Plantacyanin
Length = 91
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 35 VTNPGENYNKWSGRNR-FLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKPLLKLDSGDS 93
V N G ++N R + F D L FKY KG +V+ VN Y SC+ + SG
Sbjct: 2 VYNIGWSFNVNGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQD 61
Query: 94 EFKLDRSGPFYFISGNHDHCQKGQKLIV 121
KL R G YFI HC G K+ +
Sbjct: 62 RIKLTR-GQNYFICSFPGHCGGGMKIAI 88
>pdb|1JER|A Chain A, Cucumber Stellacyanin, Cu2+, Ph 7.0
Length = 138
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 19/108 (17%)
Query: 28 VGGKHGWVTNPGEN-YNKWSGRNRFLVNDTLFFKYKKGSDSV-LLVNKDDYDSCN----- 80
VG GW N Y++W+ F V D+L F + + +V + K +D+CN
Sbjct: 8 VGDNTGWSVPSSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSD 67
Query: 81 ----TKKPLLKLDSGDSEFKLDRSGPFYFISGNHDHCQKGQKLIVVVL 124
P+++ +LD G YF+ HC GQKL + V+
Sbjct: 68 NDVERTSPVIE--------RLDELGMHYFVCTVGTHCSNGQKLSINVV 107
>pdb|1UNP|A Chain A, Crystal Structure Of The Pleckstrin Homology Domain Of
Pkb Alpha
Length = 121
Score = 29.3 bits (64), Expect = 3.9, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 16/38 (42%)
Query: 31 KHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKGSDSV 68
K GW+ GE W R L ND F YK+ V
Sbjct: 8 KEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDV 45
>pdb|1UNR|A Chain A, Crystal Structure Of The Ph Domain Of Pkb Alpha In
Complex With A Sulfate Molecule
pdb|1UNQ|A Chain A, High Resolution Crystal Structure Of The Pleckstrin
Homology Domain Of Protein Kinase BAKT BOUND TO INS
(1,3,4,5)-Tetrakisphophate
Length = 125
Score = 29.3 bits (64), Expect = 4.1, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 16/38 (42%)
Query: 31 KHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKGSDSV 68
K GW+ GE W R L ND F YK+ V
Sbjct: 10 KEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDV 47
>pdb|2UVM|A Chain A, Structure Of Pkbalpha Ph Domain In Complex With A Novel
Inositol Headgroup Surrogate, Benzene 1,2,3,4-
Tetrakisphosphate
Length = 123
Score = 29.3 bits (64), Expect = 4.1, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 16/38 (42%)
Query: 31 KHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKGSDSV 68
K GW+ GE W R L ND F YK+ V
Sbjct: 8 KEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDV 45
>pdb|1H10|A Chain A, High Resolution Structure Of The Pleckstrin Homology
Domain Of Protein Kinase BAKT BOUND TO
Ins(1,3,4,5)-Tetrakisphophate
Length = 125
Score = 28.9 bits (63), Expect = 4.6, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 16/38 (42%)
Query: 31 KHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKGSDSV 68
K GW+ GE W R L ND F YK+ V
Sbjct: 10 KEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDV 47
>pdb|2X18|A Chain A, The Crystal Structure Of The Ph Domain Of Human Akt3
Protein Kinase
pdb|2X18|B Chain B, The Crystal Structure Of The Ph Domain Of Human Akt3
Protein Kinase
pdb|2X18|C Chain C, The Crystal Structure Of The Ph Domain Of Human Akt3
Protein Kinase
pdb|2X18|D Chain D, The Crystal Structure Of The Ph Domain Of Human Akt3
Protein Kinase
pdb|2X18|E Chain E, The Crystal Structure Of The Ph Domain Of Human Akt3
Protein Kinase
pdb|2X18|F Chain F, The Crystal Structure Of The Ph Domain Of Human Akt3
Protein Kinase
pdb|2X18|G Chain G, The Crystal Structure Of The Ph Domain Of Human Akt3
Protein Kinase
pdb|2X18|H Chain H, The Crystal Structure Of The Ph Domain Of Human Akt3
Protein Kinase
Length = 119
Score = 28.5 bits (62), Expect = 6.7, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 16/40 (40%)
Query: 31 KHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKGSDSVLL 70
K GWV GE W R L D F YK+ V L
Sbjct: 9 KEGWVQKRGEYIKNWRPRYFLLKTDGSFIGYKEKPQDVDL 48
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.141 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,954,398
Number of Sequences: 62578
Number of extensions: 146402
Number of successful extensions: 292
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 279
Number of HSP's gapped (non-prelim): 12
length of query: 380
length of database: 14,973,337
effective HSP length: 101
effective length of query: 279
effective length of database: 8,652,959
effective search space: 2414175561
effective search space used: 2414175561
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)