Query 016941
Match_columns 380
No_of_seqs 137 out of 884
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 04:11:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016941.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016941hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03148 Blue copper-like prot 100.0 2.3E-39 5E-44 290.9 14.0 114 9-125 6-119 (167)
2 PF02298 Cu_bind_like: Plastoc 100.0 8E-30 1.7E-34 205.0 3.2 84 34-117 1-85 (85)
3 PRK02710 plastocyanin; Provisi 98.8 6.2E-08 1.4E-12 81.8 11.3 85 25-124 32-119 (119)
4 TIGR02656 cyanin_plasto plasto 98.5 4.9E-07 1.1E-11 73.8 8.8 90 25-124 2-99 (99)
5 PF00127 Copper-bind: Copper b 98.4 1.1E-06 2.4E-11 71.4 7.5 75 48-124 18-99 (99)
6 TIGR03102 halo_cynanin halocya 98.4 2.1E-06 4.6E-11 73.7 9.2 88 22-124 22-115 (115)
7 COG3794 PetE Plastocyanin [Ene 98.1 2.6E-05 5.6E-10 68.6 9.8 84 25-124 39-127 (128)
8 TIGR02375 pseudoazurin pseudoa 98.0 3.3E-05 7.1E-10 66.4 8.7 75 48-127 16-90 (116)
9 TIGR03095 rusti_cyanin rusticy 97.5 0.00067 1.5E-08 60.2 8.8 75 49-123 54-147 (148)
10 TIGR02657 amicyanin amicyanin. 97.3 0.001 2.2E-08 52.9 7.3 70 48-124 12-83 (83)
11 TIGR03096 nitroso_cyanin nitro 96.5 0.0046 1E-07 55.1 5.6 58 46-114 60-123 (135)
12 PF06525 SoxE: Sulfocyanin (So 96.4 0.015 3.2E-07 54.9 8.1 78 51-128 90-190 (196)
13 PF13473 Cupredoxin_1: Cupredo 96.1 0.0054 1.2E-07 50.0 3.3 63 48-123 36-104 (104)
14 KOG3858 Ephrin, ligand for Eph 96.0 0.026 5.6E-07 54.5 7.7 105 15-129 15-165 (233)
15 COG4454 Uncharacterized copper 94.8 0.39 8.4E-06 44.4 10.9 78 46-124 62-157 (158)
16 TIGR03094 sulfo_cyanin sulfocy 94.3 0.19 4.2E-06 47.6 7.9 34 95-128 156-189 (195)
17 PF00812 Ephrin: Ephrin; Inte 94.3 0.034 7.4E-07 50.0 2.8 75 50-124 25-144 (145)
18 TIGR02695 azurin azurin. Azuri 91.5 1.5 3.3E-05 39.1 9.0 29 93-122 91-124 (125)
19 KOG0260 RNA polymerase II, lar 90.0 39 0.00085 40.3 20.2 27 94-120 1400-1430(1605)
20 PLN02604 oxidoreductase 90.0 1.5 3.3E-05 46.4 9.0 74 47-127 55-146 (566)
21 TIGR02376 Cu_nitrite_red nitri 89.3 1.1 2.3E-05 44.1 6.8 76 49-127 61-148 (311)
22 PRK02888 nitrous-oxide reducta 88.0 1.1 2.4E-05 48.8 6.5 71 48-125 556-634 (635)
23 KOG0260 RNA polymerase II, lar 86.9 39 0.00085 40.3 17.7 12 90-101 1411-1422(1605)
24 PF00116 COX2: Cytochrome C ox 86.6 1.7 3.8E-05 37.3 5.6 66 47-124 46-120 (120)
25 TIGR01480 copper_res_A copper- 86.4 3.1 6.7E-05 44.8 8.6 85 34-123 488-586 (587)
26 PF07732 Cu-oxidase_3: Multico 86.4 0.61 1.3E-05 39.7 2.8 76 48-126 27-116 (117)
27 PRK10378 inactive ferrous ion 85.2 5.9 0.00013 40.9 9.5 28 94-126 91-118 (375)
28 TIGR02866 CoxB cytochrome c ox 85.0 2.3 5E-05 39.1 6.0 70 48-126 118-193 (201)
29 PLN02354 copper ion binding / 84.4 5.1 0.00011 42.7 9.0 74 49-126 60-147 (552)
30 PF07172 GRP: Glycine rich pro 80.0 1.3 2.8E-05 37.4 2.2 24 1-24 1-26 (95)
31 PLN02835 oxidoreductase 79.4 9.8 0.00021 40.5 8.9 70 49-125 62-148 (539)
32 PLN00044 multi-copper oxidase- 78.1 17 0.00036 39.6 10.2 75 49-127 62-150 (596)
33 COG1622 CyoA Heme/copper-type 77.8 3.6 7.8E-05 40.0 4.7 72 48-128 138-215 (247)
34 PRK09723 putative fimbrial-lik 77.7 18 0.00039 38.1 10.0 13 21-33 25-37 (421)
35 PF07731 Cu-oxidase_2: Multico 74.6 5.3 0.00012 33.2 4.4 78 48-125 35-136 (138)
36 TIGR02228 sigpep_I_arch signal 67.3 12 0.00026 33.9 5.3 26 48-73 58-87 (158)
37 PF09451 ATG27: Autophagy-rela 66.9 4.4 9.5E-05 39.0 2.6 53 6-61 206-258 (268)
38 TIGR03388 ascorbase L-ascorbat 66.9 11 0.00025 39.7 5.8 73 48-127 33-123 (541)
39 MTH00047 COX2 cytochrome c oxi 62.4 9.5 0.00021 35.8 3.8 32 94-127 159-193 (194)
40 PLN02191 L-ascorbate oxidase 61.9 29 0.00064 37.2 7.7 70 49-125 56-143 (574)
41 PF05382 Amidase_5: Bacterioph 60.0 16 0.00035 33.1 4.6 36 49-84 74-114 (145)
42 PF02839 CBM_5_12: Carbohydrat 59.1 5.8 0.00013 27.6 1.4 19 42-60 1-19 (41)
43 KOG1263 Multicopper oxidases [ 58.7 84 0.0018 34.2 10.5 120 4-132 7-154 (563)
44 PLN02168 copper ion binding / 58.4 47 0.001 35.7 8.5 76 48-127 58-147 (545)
45 PHA03247 large tegument protei 57.5 5.8E+02 0.013 33.7 25.6 10 328-337 2821-2830(3151)
46 TIGR01433 CyoA cytochrome o ub 55.6 55 0.0012 31.3 7.7 31 94-126 182-215 (226)
47 cd06555 ASCH_PF0470_like ASC-1 54.9 9.8 0.00021 33.0 2.4 16 48-63 29-44 (109)
48 TIGR01480 copper_res_A copper- 54.5 39 0.00085 36.6 7.2 74 48-125 77-162 (587)
49 PF14326 DUF4384: Domain of un 49.5 72 0.0016 25.4 6.3 18 50-67 2-19 (83)
50 PF02362 B3: B3 DNA binding do 49.1 6.3 0.00014 31.1 0.3 20 46-65 69-88 (100)
51 PRK13838 conjugal transfer pil 48.4 9.5 0.00021 35.1 1.3 15 48-62 48-62 (176)
52 PRK11372 lysozyme inhibitor; P 47.6 77 0.0017 27.4 6.6 10 54-63 50-59 (109)
53 PLN02991 oxidoreductase 47.5 94 0.002 33.5 8.7 74 49-126 61-148 (543)
54 PF12191 stn_TNFRSF12A: Tumour 43.5 7.8 0.00017 35.0 0.0 25 353-377 76-100 (129)
55 MTH00140 COX2 cytochrome c oxi 42.3 30 0.00064 32.9 3.7 31 94-126 183-216 (228)
56 COG3627 PhnJ Uncharacterized e 42.1 25 0.00054 34.8 3.2 25 93-117 257-281 (291)
57 PRK11479 hypothetical protein; 39.7 27 0.00058 34.8 3.0 28 33-60 41-74 (274)
58 PRK09838 periplasmic copper-bi 39.4 88 0.0019 27.4 5.8 24 42-65 80-103 (115)
59 PF02157 Man-6-P_recep: Mannos 38.6 10 0.00022 37.9 0.0 40 21-63 208-247 (278)
60 TIGR03511 GldH_lipo gliding mo 38.2 1.2E+02 0.0025 27.9 6.6 27 55-81 42-74 (156)
61 PF00394 Cu-oxidase: Multicopp 37.5 44 0.00094 29.3 3.7 32 94-125 121-157 (159)
62 PF05808 Podoplanin: Podoplani 37.0 11 0.00024 35.1 0.0 19 361-379 134-152 (162)
63 PLN03089 hypothetical protein; 36.8 2.5E+02 0.0054 29.4 9.5 32 94-126 98-130 (373)
64 PRK11528 hypothetical protein; 36.5 79 0.0017 31.0 5.6 31 32-63 26-64 (254)
65 PF12961 DUF3850: Domain of Un 36.3 19 0.00041 29.5 1.2 13 48-60 26-38 (72)
66 PLN02792 oxidoreductase 35.1 98 0.0021 33.2 6.5 70 49-125 49-135 (536)
67 PRK10525 cytochrome o ubiquino 34.9 1.5E+02 0.0033 30.1 7.5 30 94-125 194-226 (315)
68 PRK14125 cell division suppres 34.5 23 0.0005 30.2 1.5 10 49-58 39-48 (103)
69 PTZ00047 cytochrome c oxidase 33.8 49 0.0011 30.9 3.5 30 94-125 116-148 (162)
70 MTH00154 COX2 cytochrome c oxi 33.4 50 0.0011 31.5 3.7 30 94-125 183-215 (227)
71 PF10731 Anophelin: Thrombin i 32.7 39 0.00084 27.4 2.4 33 1-34 1-33 (65)
72 KOG2315 Predicted translation 32.5 69 0.0015 35.1 4.9 66 42-107 206-277 (566)
73 PLN02792 oxidoreductase 32.4 2.1E+02 0.0045 30.8 8.4 80 50-129 406-509 (536)
74 TIGR03389 laccase laccase, pla 32.2 1.1E+02 0.0024 32.4 6.3 78 49-127 36-124 (539)
75 MTH00168 COX2 cytochrome c oxi 31.9 53 0.0012 31.2 3.6 31 94-126 183-216 (225)
76 MTH00139 COX2 cytochrome c oxi 31.7 52 0.0011 31.2 3.5 31 94-126 183-216 (226)
77 KOG0196 Tyrosine kinase, EPH ( 31.5 34 0.00073 39.3 2.5 46 1-49 1-55 (996)
78 KOG3342 Signal peptidase I [In 31.5 17 0.00037 34.2 0.2 22 50-71 77-102 (180)
79 MTH00117 COX2 cytochrome c oxi 31.0 60 0.0013 30.9 3.8 30 94-125 183-215 (227)
80 MTH00129 COX2 cytochrome c oxi 30.8 52 0.0011 31.5 3.3 30 94-125 183-215 (230)
81 MTH00098 COX2 cytochrome c oxi 30.0 58 0.0013 31.1 3.5 30 94-125 183-215 (227)
82 TIGR01432 QOXA cytochrome aa3 30.0 56 0.0012 30.7 3.3 31 94-126 173-206 (217)
83 PRK12407 flgH flagellar basal 29.3 77 0.0017 30.6 4.2 19 44-62 58-76 (221)
84 MTH00038 COX2 cytochrome c oxi 29.1 66 0.0014 30.7 3.7 30 94-125 183-215 (229)
85 PRK13861 type IV secretion sys 27.7 1.6E+02 0.0036 29.3 6.3 21 51-71 39-59 (292)
86 PRK10808 outer membrane protei 27.3 1.7E+02 0.0036 29.0 6.3 12 25-36 27-38 (351)
87 KOG1924 RhoA GTPase effector D 26.4 4.9E+02 0.011 30.6 10.1 9 333-341 593-601 (1102)
88 MTH00023 COX2 cytochrome c oxi 26.3 74 0.0016 30.7 3.5 31 94-126 194-227 (240)
89 PF09792 But2: Ubiquitin 3 bin 26.0 1.7E+02 0.0038 26.2 5.6 32 94-128 100-131 (143)
90 PF10377 ATG11: Autophagy-rela 25.4 40 0.00087 29.7 1.5 19 49-67 41-59 (129)
91 MTH00008 COX2 cytochrome c oxi 24.8 81 0.0017 30.2 3.5 30 94-125 183-215 (228)
92 MTH00076 COX2 cytochrome c oxi 23.5 86 0.0019 30.0 3.4 30 94-125 183-215 (228)
93 MTH00051 COX2 cytochrome c oxi 23.1 84 0.0018 30.2 3.2 31 94-126 187-220 (234)
94 PF12988 DUF3872: Domain of un 23.1 1.8E+02 0.0039 26.7 5.1 75 42-126 35-122 (137)
95 PF06007 PhnJ: Phosphonate met 22.9 44 0.00094 33.6 1.3 23 93-115 249-271 (277)
96 PF11604 CusF_Ec: Copper bindi 22.7 59 0.0013 25.6 1.8 26 42-67 34-59 (70)
97 PF04014 Antitoxin-MazE: Antid 22.7 37 0.00079 24.5 0.6 34 27-65 2-35 (47)
98 PF00686 CBM_20: Starch bindin 22.6 78 0.0017 25.4 2.5 40 24-63 17-68 (96)
99 PHA02954 EEV membrane glycopro 22.3 3.2E+02 0.0069 27.8 7.2 18 49-66 36-53 (317)
100 cd05810 CBM20_alpha_MTH Glucan 22.2 62 0.0013 26.7 1.9 39 25-63 18-64 (97)
101 KOG3006 Transthyretin and rela 22.1 3.2E+02 0.0069 25.0 6.4 12 1-12 1-12 (132)
102 smart00495 ChtBD3 Chitin-bindi 22.0 56 0.0012 22.7 1.4 18 42-59 1-18 (41)
103 PRK04517 hypothetical protein; 22.0 3.1E+02 0.0068 26.0 6.7 29 1-31 1-30 (216)
104 PF06462 Hyd_WA: Propeller; I 21.3 1.5E+02 0.0032 20.4 3.3 26 93-118 2-27 (32)
105 PF06586 TraK: TraK protein; 21.1 6.8E+02 0.015 23.3 10.0 21 89-109 75-98 (234)
106 PF12115 Salp15: Salivary prot 20.9 16 0.00035 31.4 -1.8 73 40-117 34-110 (118)
107 PF01345 DUF11: Domain of unkn 20.9 65 0.0014 24.7 1.7 22 41-62 27-48 (76)
108 PRK01904 hypothetical protein; 20.3 3.3E+02 0.0071 25.9 6.5 9 55-63 59-67 (219)
109 MTH00027 COX2 cytochrome c oxi 20.0 1.2E+02 0.0026 29.9 3.6 30 94-125 217-249 (262)
No 1
>PLN03148 Blue copper-like protein; Provisional
Probab=100.00 E-value=2.3e-39 Score=290.88 Aligned_cols=114 Identities=32% Similarity=0.596 Sum_probs=103.6
Q ss_pred HHHHHHHHHhhcccceEEEecCCCCCccCCCCCcccccCCCeEecCceeeeeeecCCceEEEecccCCCCCCCCCCcccc
Q 016941 9 LSLALFAFFISSSHALKFNVGGKHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKPLLKL 88 (380)
Q Consensus 9 llLaLLAaL~s~AsA~tyvVGGs~GWt~~P~~nYt~WAS~kTF~VGDTLVFkY~aG~HSVveVnK~dYdsCn~snpI~~f 88 (380)
|++++++++...+.+++|+|||+.||+. +.||++|+++++|+|||+|+|+|+.+.|+|+||++++|++|+..+++..|
T Consensus 6 l~~~~~~~~~~~~~a~~~~VGd~~GW~~--~~~Y~~WA~~k~F~VGD~LvF~Y~~~~hnV~~V~~~~Y~~C~~~~pi~~~ 83 (167)
T PLN03148 6 LFCFFALFSASATTATDHIVGANKGWNP--GINYTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEGAAGNW 83 (167)
T ss_pred HHHHHHHHhhhhccceEEEeCCCCCcCC--CCChhHhhcCCCCccCCEEEEEecCCCceEEEEChHHcCcccCCCCccee
Confidence 3333444556688899999999999984 57999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEeccccceEEEeCCCCcCCCCCeEEEEecC
Q 016941 89 DSGDSEFKLDRSGPFYFISGNHDHCQKGQKLIVVVLH 125 (380)
Q Consensus 89 SsGndvVtLdkpG~yYFICGV~gHCq~GMKLaInV~a 125 (380)
++|++.|+|+++|+|||||+ .+||++||||.|+|..
T Consensus 84 tsG~d~v~L~~~G~~YFIcg-~ghC~~GmKl~I~V~~ 119 (167)
T PLN03148 84 TSGKDFIPLNKAKRYYFICG-NGQCFNGMKVTILVHP 119 (167)
T ss_pred cCCCcEEEecCCccEEEEcC-CCccccCCEEEEEEcC
Confidence 99999999999999999999 5999999999999953
No 2
>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved. This domain is found in a variety of plant cyanins and pollern allergen. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 3.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1JER_A 1WS7_A 1WS8_D 1F56_B 1X9R_B 1X9U_A 2CBP_A.
Probab=99.95 E-value=8e-30 Score=205.03 Aligned_cols=84 Identities=44% Similarity=0.911 Sum_probs=69.0
Q ss_pred CccCC-CCCcccccCCCeEecCceeeeeeecCCceEEEecccCCCCCCCCCCccccCCCCcEEEeccccceEEEeCCCCc
Q 016941 34 WVTNP-GENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKPLLKLDSGDSEFKLDRSGPFYFISGNHDH 112 (380)
Q Consensus 34 Wt~~P-~~nYt~WAS~kTF~VGDTLVFkY~aG~HSVveVnK~dYdsCn~snpI~~fSsGndvVtLdkpG~yYFICGV~gH 112 (380)
|+++. ..+|++||++++|+|||+|+|+|+.+.|+|+||+|++|+.|+..+++..+.+|++.|+|+++|++||||++++|
T Consensus 1 W~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~~G~~YFic~~~~H 80 (85)
T PF02298_consen 1 WTIPTNASNYTDWASGKTFRVGDTLVFNYDSGQHSVVEVSKADYDSCNSSNPISTYSTGNDTVTLTKPGPHYFICGVPGH 80 (85)
T ss_dssp SSSSSSTTHHHHHHCTS-BETTEEEEEE--TTTB-EEEESHHHHHHT--STTSEEE-SSEEEEEE-SSEEEEEE--STTT
T ss_pred CccCCCccchhHhhcCCcEeCCCEEEEEecCCCCeEEecChhhCccCCCCCceecccCCCEEEEeCCCcCeEEEeCCCCc
Confidence 77653 26999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 016941 113 CQKGQ 117 (380)
Q Consensus 113 Cq~GM 117 (380)
|++||
T Consensus 81 C~~Gq 85 (85)
T PF02298_consen 81 CQKGQ 85 (85)
T ss_dssp TTTT-
T ss_pred ccccC
Confidence 99999
No 3
>PRK02710 plastocyanin; Provisional
Probab=98.80 E-value=6.2e-08 Score=81.80 Aligned_cols=85 Identities=15% Similarity=0.238 Sum_probs=58.1
Q ss_pred EEEecCCCCC-ccCCCCCcccccCCCeEecCceeeeeee-cCCceEEEecccCCCCCCCCCCccccCCCC-cEEEecccc
Q 016941 25 KFNVGGKHGW-VTNPGENYNKWSGRNRFLVNDTLFFKYK-KGSDSVLLVNKDDYDSCNTKKPLLKLDSGD-SEFKLDRSG 101 (380)
Q Consensus 25 tyvVGGs~GW-t~~P~~nYt~WAS~kTF~VGDTLVFkY~-aG~HSVveVnK~dYdsCn~snpI~~fSsGn-dvVtLdkpG 101 (380)
++.+|.++|+ .|.| +..++++||+|.|... ...|+|+.- +.+.....+ .....|. .+++++++|
T Consensus 32 ~V~~~~~~~~~~F~P--------~~i~v~~Gd~V~~~N~~~~~H~v~~~---~~~~~~~~~--~~~~pg~t~~~tF~~~G 98 (119)
T PRK02710 32 EVKMGSDAGMLAFEP--------STLTIKAGDTVKWVNNKLAPHNAVFD---GAKELSHKD--LAFAPGESWEETFSEAG 98 (119)
T ss_pred EEEEccCCCeeEEeC--------CEEEEcCCCEEEEEECCCCCceEEec---CCccccccc--cccCCCCEEEEEecCCE
Confidence 5667766555 4443 4679999999999874 356998642 111111111 1233443 578999999
Q ss_pred ceEEEeCCCCcCCCCCeEEEEec
Q 016941 102 PFYFISGNHDHCQKGQKLIVVVL 124 (380)
Q Consensus 102 ~yYFICGV~gHCq~GMKLaInV~ 124 (380)
.|.|+|. .|=+.|||..|+|.
T Consensus 99 ~y~y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 99 TYTYYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred EEEEEcC--CCccCCcEEEEEEC
Confidence 9999999 79999999999983
No 4
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.53 E-value=4.9e-07 Score=73.80 Aligned_cols=90 Identities=18% Similarity=0.231 Sum_probs=59.7
Q ss_pred EEEecCC-CCCccCCCCCcccccCCCeEecCceeeeeeec-CCceEEEeccc-----CCCCCCCCCCccccCCCC-cEEE
Q 016941 25 KFNVGGK-HGWVTNPGENYNKWSGRNRFLVNDTLFFKYKK-GSDSVLLVNKD-----DYDSCNTKKPLLKLDSGD-SEFK 96 (380)
Q Consensus 25 tyvVGGs-~GWt~~P~~nYt~WAS~kTF~VGDTLVFkY~a-G~HSVveVnK~-----dYdsCn~snpI~~fSsGn-dvVt 96 (380)
++.||.+ .+-.|.|. ..++++||+|+|..+. ..|+|+..... ........+.......|. ..++
T Consensus 2 ~v~~g~~~g~~~F~P~--------~i~v~~G~~V~~~N~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~t~~~t 73 (99)
T TIGR02656 2 TVKMGADKGALVFEPA--------KISIAAGDTVEWVNNKGGPHNVVFDEDAVPAGVKELAKSLSHKDLLNSPGESYEVT 73 (99)
T ss_pred EEEEecCCCceeEeCC--------EEEECCCCEEEEEECCCCCceEEECCCCCccchhhhcccccccccccCCCCEEEEE
Confidence 5678854 44667653 6799999999999653 45998763221 000111111011123444 4788
Q ss_pred eccccceEEEeCCCCcCCCCCeEEEEec
Q 016941 97 LDRSGPFYFISGNHDHCQKGQKLIVVVL 124 (380)
Q Consensus 97 LdkpG~yYFICGV~gHCq~GMKLaInV~ 124 (380)
++.+|.|.|+|. .||+.||+..|.|.
T Consensus 74 F~~~G~y~y~C~--~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 74 FSTPGTYTFYCE--PHRGAGMVGKITVE 99 (99)
T ss_pred eCCCEEEEEEcC--CccccCCEEEEEEC
Confidence 999999999999 89999999999884
No 5
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.39 E-value=1.1e-06 Score=71.40 Aligned_cols=75 Identities=16% Similarity=0.234 Sum_probs=53.4
Q ss_pred CCeEecCceeeeee-ecCCceEEEeccc--CCCCCCCCCC---ccccCCCC-cEEEeccccceEEEeCCCCcCCCCCeEE
Q 016941 48 RNRFLVNDTLFFKY-KKGSDSVLLVNKD--DYDSCNTKKP---LLKLDSGD-SEFKLDRSGPFYFISGNHDHCQKGQKLI 120 (380)
Q Consensus 48 ~kTF~VGDTLVFkY-~aG~HSVveVnK~--dYdsCn~snp---I~~fSsGn-dvVtLdkpG~yYFICGV~gHCq~GMKLa 120 (380)
..++++||+|.|.+ +...|+|+..... .-..++.... ......|. ..++++++|.|.|+|. . |+..||+-.
T Consensus 18 ~i~V~~G~tV~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~~~G~y~y~C~-P-H~~~GM~G~ 95 (99)
T PF00127_consen 18 EITVKAGDTVTFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFTKPGTYEYYCT-P-HYEAGMVGT 95 (99)
T ss_dssp EEEEETTEEEEEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEESSEEEEEEET-T-TGGTTSEEE
T ss_pred EEEECCCCEEEEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeCCCeEEEEEcC-C-CcccCCEEE
Confidence 67899999999999 4567999887521 0111221111 11234454 3788889999999999 7 999999999
Q ss_pred EEec
Q 016941 121 VVVL 124 (380)
Q Consensus 121 InV~ 124 (380)
|.|.
T Consensus 96 i~V~ 99 (99)
T PF00127_consen 96 IIVE 99 (99)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 9984
No 6
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=98.38 E-value=2.1e-06 Score=73.66 Aligned_cols=88 Identities=22% Similarity=0.355 Sum_probs=63.2
Q ss_pred cceEEEec--CC-CCCccCCCCCcccccCCCeEecCceeeeeeec--CCceEEEecccCCCCCCCCCCccccCCC-CcEE
Q 016941 22 HALKFNVG--GK-HGWVTNPGENYNKWSGRNRFLVNDTLFFKYKK--GSDSVLLVNKDDYDSCNTKKPLLKLDSG-DSEF 95 (380)
Q Consensus 22 sA~tyvVG--Gs-~GWt~~P~~nYt~WAS~kTF~VGDTLVFkY~a--G~HSVveVnK~dYdsCn~snpI~~fSsG-ndvV 95 (380)
...++.|| ++ .+..|.|. ..++++||+|+|+|+. ..|+|.-.+...|+. .. .....| ...+
T Consensus 22 ~~~~v~~G~~~~~g~~~F~P~--------~ltV~~GdTVtw~~~~d~~~HnV~s~~~~~f~s----~~-~~~~~G~t~s~ 88 (115)
T TIGR03102 22 DEVTVDVGAEANGGGFAFDPP--------AIRVDPGTTVVWEWTGEGGGHNVVSDGDGDLDE----SE-RVSEEGTTYEH 88 (115)
T ss_pred ceEEEEecccCCCCceeEeCC--------EEEECCCCEEEEEECCCCCCEEEEECCCCCccc----cc-cccCCCCEEEE
Confidence 44678898 33 34667663 5799999999999865 569997633334441 11 122334 4589
Q ss_pred EeccccceEEEeCCCCcCCCCCeEEEEec
Q 016941 96 KLDRSGPFYFISGNHDHCQKGQKLIVVVL 124 (380)
Q Consensus 96 tLdkpG~yYFICGV~gHCq~GMKLaInV~ 124 (380)
+|+++|.|.|+|.. |=..|||-.|.|.
T Consensus 89 Tf~~~G~Y~Y~C~p--H~~~gM~G~I~V~ 115 (115)
T TIGR03102 89 TFEEPGIYLYVCVP--HEALGMKGAVVVE 115 (115)
T ss_pred EecCCcEEEEEccC--CCCCCCEEEEEEC
Confidence 99999999999996 8888999999983
No 7
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=98.08 E-value=2.6e-05 Score=68.65 Aligned_cols=84 Identities=20% Similarity=0.193 Sum_probs=60.6
Q ss_pred EEEecC-CCCCccCCCCCcccccCCCeEecCceeeeeeecC-CceEEEecccCCCCCCCCCCccccCCC---CcEEEecc
Q 016941 25 KFNVGG-KHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKG-SDSVLLVNKDDYDSCNTKKPLLKLDSG---DSEFKLDR 99 (380)
Q Consensus 25 tyvVGG-s~GWt~~P~~nYt~WAS~kTF~VGDTLVFkY~aG-~HSVveVnK~dYdsCn~snpI~~fSsG---ndvVtLdk 99 (380)
...++. .+.-.|.| +..++.+||++.|.|... .|||.-+...+.+ ....+..+ ..++++++
T Consensus 39 ~~~~~~~~~~~vF~P--------A~v~v~pGDTVtw~~~d~~~Hnv~~~~~~~~~------g~~~~~~~~~~s~~~Tfe~ 104 (128)
T COG3794 39 SVNKGVDIGAMVFEP--------AEVTVKPGDTVTWVNTDSVGHNVTAVGGMDPE------GSGTLKAGINESFTHTFET 104 (128)
T ss_pred eeeeeccCcceeEcC--------cEEEECCCCEEEEEECCCCCceEEEeCCCCcc------cccccccCCCcceEEEecc
Confidence 344443 34466766 367999999999999887 8999886544111 11112222 24788999
Q ss_pred ccceEEEeCCCCcCCCCCeEEEEec
Q 016941 100 SGPFYFISGNHDHCQKGQKLIVVVL 124 (380)
Q Consensus 100 pG~yYFICGV~gHCq~GMKLaInV~ 124 (380)
+|.|.|+|.- |=..|||-.|.|.
T Consensus 105 ~G~Y~Y~C~P--H~~~gM~G~IvV~ 127 (128)
T COG3794 105 PGEYTYYCTP--HPGMGMKGKIVVG 127 (128)
T ss_pred cceEEEEecc--CCCCCcEEEEEeC
Confidence 9999999998 9999999999985
No 8
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=98.00 E-value=3.3e-05 Score=66.41 Aligned_cols=75 Identities=12% Similarity=0.045 Sum_probs=54.4
Q ss_pred CCeEecCceeeeeeecCCceEEEecccCCCCCCCCCCccccCCCCcEEEeccccceEEEeCCCCcCCCCCeEEEEecCCC
Q 016941 48 RNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKPLLKLDSGDSEFKLDRSGPFYFISGNHDHCQKGQKLIVVVLHER 127 (380)
Q Consensus 48 ~kTF~VGDTLVFkY~aG~HSVveVnK~dYdsCn~snpI~~fSsGndvVtLdkpG~yYFICGV~gHCq~GMKLaInV~ass 127 (380)
..++++||+|+|.+....|+|..+.....+. .+.+..-.+...+++++++|.|-|+|. .|=..||+-.|+|....
T Consensus 16 ~v~V~~GdTV~f~n~d~~Hnv~~~~~~~p~g---~~~~~s~~g~~~~~tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~~~ 90 (116)
T TIGR02375 16 YIRAAPGDTVTFVPTDKGHNVETIKGMIPEG---AEAFKSKINEEYTVTVTEEGVYGVKCT--PHYGMGMVALIQVGDPP 90 (116)
T ss_pred EEEECCCCEEEEEECCCCeeEEEccCCCcCC---cccccCCCCCEEEEEeCCCEEEEEEcC--CCccCCCEEEEEECCCC
Confidence 5799999999999988889997643211111 111111012335899999999999999 59999999999998753
No 9
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=97.47 E-value=0.00067 Score=60.20 Aligned_cols=75 Identities=15% Similarity=0.226 Sum_probs=49.4
Q ss_pred CeEecCceeeeeeecC----CceEEEeccc-CC-----------C-CCCCCCCc--cccCCCCcEEEeccccceEEEeCC
Q 016941 49 NRFLVNDTLFFKYKKG----SDSVLLVNKD-DY-----------D-SCNTKKPL--LKLDSGDSEFKLDRSGPFYFISGN 109 (380)
Q Consensus 49 kTF~VGDTLVFkY~aG----~HSVveVnK~-dY-----------d-sCn~snpI--~~fSsGndvVtLdkpG~yYFICGV 109 (380)
.+++.||+|+|.+.+. .|.....++. .+ . .|.+.... ..+..+..+|+++++|+|||+|..
T Consensus 54 I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~~~~tf~f~~aGtywyhC~~ 133 (148)
T TIGR03095 54 IVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGYTDFTYHFSTAGTYWYLCTY 133 (148)
T ss_pred EEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCccceeEEEEECCCCeEEEEEcCC
Confidence 4689999999999775 3665543321 11 1 13221111 001112457888899999999999
Q ss_pred CCcCCCCCeEEEEe
Q 016941 110 HDHCQKGQKLIVVV 123 (380)
Q Consensus 110 ~gHCq~GMKLaInV 123 (380)
.+|=+.||+-.|.|
T Consensus 134 pgH~~~GM~G~iiV 147 (148)
T TIGR03095 134 PGHAENGMYGKIVV 147 (148)
T ss_pred hhHHHCCCEEEEEE
Confidence 99999999988877
No 10
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=97.32 E-value=0.001 Score=52.85 Aligned_cols=70 Identities=17% Similarity=0.207 Sum_probs=48.3
Q ss_pred CCeEecCceeeeeeecC-CceEEEecccCCCCCCCCCCccccCCCC-cEEEeccccceEEEeCCCCcCCCCCeEEEEec
Q 016941 48 RNRFLVNDTLFFKYKKG-SDSVLLVNKDDYDSCNTKKPLLKLDSGD-SEFKLDRSGPFYFISGNHDHCQKGQKLIVVVL 124 (380)
Q Consensus 48 ~kTF~VGDTLVFkY~aG-~HSVveVnK~dYdsCn~snpI~~fSsGn-dvVtLdkpG~yYFICGV~gHCq~GMKLaInV~ 124 (380)
..++++||+|.|..... .|+|...+.. +..=+.... ....|. .+++++++|.|-|.|..+. +||-.|.|.
T Consensus 12 ~i~v~~GdtVt~~N~d~~~Hnv~~~~g~-~~~~~~~~~--~~~~g~~~~~tf~~~G~y~y~C~~Hp----~M~G~v~V~ 83 (83)
T TIGR02657 12 ELHVKVGDTVTWINREAMPHNVHFVAGV-LGEAALKGP--MMKKEQAYSLTFTEAGTYDYHCTPHP----FMRGKVVVE 83 (83)
T ss_pred EEEECCCCEEEEEECCCCCccEEecCCC-Ccccccccc--ccCCCCEEEEECCCCEEEEEEcCCCC----CCeEEEEEC
Confidence 56899999999998754 6999764322 111111111 123443 4899999999999999855 499998873
No 11
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=96.55 E-value=0.0046 Score=55.14 Aligned_cols=58 Identities=17% Similarity=0.273 Sum_probs=37.3
Q ss_pred cCCCeEecCceeeeeeecCC---ceEEEecccCCCCCCCCCCccccCCCCc---EEEeccccceEEEeCCCCcCC
Q 016941 46 SGRNRFLVNDTLFFKYKKGS---DSVLLVNKDDYDSCNTKKPLLKLDSGDS---EFKLDRSGPFYFISGNHDHCQ 114 (380)
Q Consensus 46 AS~kTF~VGDTLVFkY~aG~---HSVveVnK~dYdsCn~snpI~~fSsGnd---vVtLdkpG~yYFICGV~gHCq 114 (380)
-+..+++.||.+++.|.+.. |.+.. ++|+ .. .....|.. .|+.+++|.|+|+|+. ||.
T Consensus 60 P~~I~VkaGD~Vtl~vtN~d~~~H~f~i---~~~g---is---~~I~pGet~TitF~adKpG~Y~y~C~~--HP~ 123 (135)
T TIGR03096 60 PEALVVKKGTPVKVTVENKSPISEGFSI---DAYG---IS---EVIKAGETKTISFKADKAGAFTIWCQL--HPK 123 (135)
T ss_pred CCEEEECCCCEEEEEEEeCCCCccceEE---CCCC---cc---eEECCCCeEEEEEECCCCEEEEEeCCC--CCh
Confidence 35568899999999886533 44332 2332 11 12233433 5778999999999998 774
No 12
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=96.37 E-value=0.015 Score=54.90 Aligned_cols=78 Identities=13% Similarity=0.228 Sum_probs=49.2
Q ss_pred EecCceeeeeeecCC---ceEEEecc-cCCCCCCCC---CCccc--------c-----CCCCcE---EEeccccceEEEe
Q 016941 51 FLVNDTLFFKYKKGS---DSVLLVNK-DDYDSCNTK---KPLLK--------L-----DSGDSE---FKLDRSGPFYFIS 107 (380)
Q Consensus 51 F~VGDTLVFkY~aG~---HSVveVnK-~dYdsCn~s---npI~~--------f-----SsGndv---VtLdkpG~yYFIC 107 (380)
+-.|.++.|+|.+.. |+++.|.. ..+..|..- +.+.. | ..|... +.-..+|+|||+|
T Consensus 90 VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~~l~aG~YwlvC 169 (196)
T PF06525_consen 90 VPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYNDLPAGYYWLVC 169 (196)
T ss_pred EcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEccCCCceEEEEc
Confidence 456888888887643 99877732 233333211 22210 0 123322 2122479999999
Q ss_pred CCCCcCCCCCeEEEEecCCCC
Q 016941 108 GNHDHCQKGQKLIVVVLHERP 128 (380)
Q Consensus 108 GV~gHCq~GMKLaInV~asss 128 (380)
+..+|-+.||-..+.|...-.
T Consensus 170 ~ipGHA~sGMw~~LiVs~~vt 190 (196)
T PF06525_consen 170 GIPGHAESGMWGVLIVSSNVT 190 (196)
T ss_pred cCCChhhcCCEEEEEEecCcc
Confidence 999999999999999887654
No 13
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=96.09 E-value=0.0054 Score=50.00 Aligned_cols=63 Identities=13% Similarity=0.231 Sum_probs=29.6
Q ss_pred CCeEecCceeeeeeecC---CceEEEecccCCCCCCCCCCccccCCCCc-EEEe--ccccceEEEeCCCCcCCCCCeEEE
Q 016941 48 RNRFLVNDTLFFKYKKG---SDSVLLVNKDDYDSCNTKKPLLKLDSGDS-EFKL--DRSGPFYFISGNHDHCQKGQKLIV 121 (380)
Q Consensus 48 ~kTF~VGDTLVFkY~aG---~HSVveVnK~dYdsCn~snpI~~fSsGnd-vVtL--dkpG~yYFICGV~gHCq~GMKLaI 121 (380)
..+++.||.+.|.|.+. .|++.. .++ +.......|.. +|++ +++|.|=|+|+.+. . ||-.|
T Consensus 36 ~i~v~~G~~v~l~~~N~~~~~h~~~i---~~~------~~~~~l~~g~~~~~~f~~~~~G~y~~~C~~~~--~--m~G~l 102 (104)
T PF13473_consen 36 TITVKAGQPVTLTFTNNDSRPHEFVI---PDL------GISKVLPPGETATVTFTPLKPGEYEFYCTMHP--N--MKGTL 102 (104)
T ss_dssp EEEEETTCEEEEEEEE-SSS-EEEEE---GGG------TEEEEE-TT-EEEEEEEE-S-EEEEEB-SSS---T--TB---
T ss_pred EEEEcCCCeEEEEEEECCCCcEEEEE---CCC------ceEEEECCCCEEEEEEcCCCCEEEEEEcCCCC--c--ceecc
Confidence 67999999555555442 355543 111 11122334443 4555 89999999999754 3 77666
Q ss_pred Ee
Q 016941 122 VV 123 (380)
Q Consensus 122 nV 123 (380)
.|
T Consensus 103 iV 104 (104)
T PF13473_consen 103 IV 104 (104)
T ss_dssp --
T ss_pred cC
Confidence 54
No 14
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms]
Probab=95.98 E-value=0.026 Score=54.52 Aligned_cols=105 Identities=22% Similarity=0.416 Sum_probs=59.8
Q ss_pred HHHhhcccce-EEEecCCCCCcc-CCC---CCcccccCCCeEecCceeeeeeec---CC------ceEEEecccCCCCCC
Q 016941 15 AFFISSSHAL-KFNVGGKHGWVT-NPG---ENYNKWSGRNRFLVNDTLFFKYKK---GS------DSVLLVNKDDYDSCN 80 (380)
Q Consensus 15 AaL~s~AsA~-tyvVGGs~GWt~-~P~---~nYt~WAS~kTF~VGDTLVFkY~a---G~------HSVveVnK~dYdsCn 80 (380)
++.+..+.+. .|.|= |.. ++- .|| .+.+++||.|-+-... +. .-|++|+++.|+.|+
T Consensus 15 l~~~~~~~~~~~~~Vy----WNSSNp~F~~~d~-----vI~v~igD~ldIiCP~~e~~~~~~~E~yilYmV~~~~y~~C~ 85 (233)
T KOG3858|consen 15 LCPLGLAAGKNLHPVY----WNSSNPRFRRGDY-----VIYVQIGDYLDIICPHYEEGGPEGYEYYILYMVSEEEYDLCE 85 (233)
T ss_pred hcccccCccccccceE----ecCCCcceecCCc-----eEEeccCCEEEEECCCCCCCCCCcceEEEEEEeChHHhhhhh
Confidence 4455666666 66665 853 221 122 2457889999886532 21 225789999999999
Q ss_pred C-CCCcccc--CC--C--------------CcEEEecccc-ceEEEeCCC-----------CcCC-CCCeEEEEecCCCC
Q 016941 81 T-KKPLLKL--DS--G--------------DSEFKLDRSG-PFYFISGNH-----------DHCQ-KGQKLIVVVLHERP 128 (380)
Q Consensus 81 ~-snpI~~f--Ss--G--------------ndvVtLdkpG-~yYFICGV~-----------gHCq-~GMKLaInV~asss 128 (380)
. .++.... +. . ..-+.+ ++| .||||+.-. +-|. ..||+.+.|.....
T Consensus 86 ~~s~~~~~~~C~rP~~~~kfsikFq~ftP~p~G~EF-~pG~~YY~IStStg~~~g~~~~~ggvc~~~~mk~~~~V~~~~~ 164 (233)
T KOG3858|consen 86 LRSKPFKRWECNRPSTPLKFSIKFQRFTPFPLGFEF-QPGHTYYYISTSTGDAEGLCNLRGGVCVTRNMKLLMKVGQSPR 164 (233)
T ss_pred ccCCCcEEEEecCCCcchhhhhhheecCCCCCCccc-cCCCeEEEEeCCCccccccchhhCCEeccCCceEEEEecccCC
Confidence 6 3332111 10 0 011222 245 788887422 3454 36999999987665
Q ss_pred C
Q 016941 129 P 129 (380)
Q Consensus 129 ~ 129 (380)
.
T Consensus 165 ~ 165 (233)
T KOG3858|consen 165 S 165 (233)
T ss_pred C
Confidence 4
No 15
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=94.82 E-value=0.39 Score=44.36 Aligned_cols=78 Identities=14% Similarity=0.179 Sum_probs=50.5
Q ss_pred cCCCeEecCceeeeeeecCCceEEEe--cccCCC-----C--------CCCCCCccccCCC---CcEEEeccccceEEEe
Q 016941 46 SGRNRFLVNDTLFFKYKKGSDSVLLV--NKDDYD-----S--------CNTKKPLLKLDSG---DSEFKLDRSGPFYFIS 107 (380)
Q Consensus 46 AS~kTF~VGDTLVFkY~aG~HSVveV--nK~dYd-----s--------Cn~snpI~~fSsG---ndvVtLdkpG~yYFIC 107 (380)
.+...++-|.+++|.-++....+.++ .+.+.. . -+..+. .+..-| .-+|.+.++|.|=|+|
T Consensus 62 p~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~~~Dme~d~~~~-v~L~PG~s~elvv~ft~~g~ye~~C 140 (158)
T COG4454 62 PSSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMILADDMEHDDPNT-VTLAPGKSGELVVVFTGAGKYEFAC 140 (158)
T ss_pred CCcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhhCCccccCCcce-eEeCCCCcEEEEEEecCCccEEEEe
Confidence 35567899999988877654333322 111110 0 011111 122333 3478899999999999
Q ss_pred CCCCcCCCCCeEEEEec
Q 016941 108 GNHDHCQKGQKLIVVVL 124 (380)
Q Consensus 108 GV~gHCq~GMKLaInV~ 124 (380)
.+++|-+.||.-.|+|.
T Consensus 141 ~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 141 NIPGHYEAGMVGEITVS 157 (158)
T ss_pred cCCCcccCCcEEEEEeC
Confidence 99999999999999985
No 16
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=94.34 E-value=0.19 Score=47.56 Aligned_cols=34 Identities=18% Similarity=0.434 Sum_probs=28.2
Q ss_pred EEeccccceEEEeCCCCcCCCCCeEEEEecCCCC
Q 016941 95 FKLDRSGPFYFISGNHDHCQKGQKLIVVVLHERP 128 (380)
Q Consensus 95 VtLdkpG~yYFICGV~gHCq~GMKLaInV~asss 128 (380)
+.-..+|.||++|+..+|-+.||-..+.|...-.
T Consensus 156 ~~~~~~G~YwlvCgipGHAesGMw~~lIVSs~vt 189 (195)
T TIGR03094 156 WNDTSAGKYWLVCGITGHAESGMWAVVIVSSNVT 189 (195)
T ss_pred eccCCCeeEEEEcccCChhhcCcEEEEEEecCcc
Confidence 3434689999999999999999998888876543
No 17
>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO). These receptors and their ligands have been implicated in regulating neuronal axon guidance and in patterning of the developing nervous system and may also serve a patterning and compartmentalisation role outside of the nervous system as well. Ephrins are membrane-attached proteins of 205 to 340 residues. Attachment appears to be crucial for their normal function. Type-A ephrins are linked to the membrane via a glycosylphosphatidylinositol (GPI)-linkage, while type-B ephrins are type-I membrane proteins.; GO: 0016020 membrane; PDB: 3HEI_P 3CZU_B 3MBW_B 1KGY_E 1IKO_P 2WO3_B 2I85_A 2VSK_B 3GXU_B 2VSM_B ....
Probab=94.27 E-value=0.034 Score=49.98 Aligned_cols=75 Identities=24% Similarity=0.443 Sum_probs=44.6
Q ss_pred eEecCceeeeeeecCC-----------ceEEEecccCCCCCCCCC-Ccccc------C-CCCcEEEe--c----------
Q 016941 50 RFLVNDTLFFKYKKGS-----------DSVLLVNKDDYDSCNTKK-PLLKL------D-SGDSEFKL--D---------- 98 (380)
Q Consensus 50 TF~VGDTLVFkY~aG~-----------HSVveVnK~dYdsCn~sn-pI~~f------S-sGndvVtL--d---------- 98 (380)
.+++||.|.|...... ..|++|++++|+.|+... ....+ . .|...|++ -
T Consensus 25 ~V~i~D~ldIiCP~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~~~~kft~kFq~fSP~p~G~E 104 (145)
T PF00812_consen 25 EVRIGDYLDIICPHYEPGGPPPEEYEYYILYMVSEEGYESCSLTSRPRLLWECDRPEAPHGPKKFTIKFQEFSPFPLGLE 104 (145)
T ss_dssp EE-TTEEEEEEE--SSSSSSSCSSS-BEEEEEE-HHHHHHTBSSTSEEEEEEE-TTTSTTSSEEEEEESSSS-SSTTSSS
T ss_pred EecCCCEEEEECCCCCCCCCCCCCceEEEEEEEcHHHhcccCCCCCCcEEEEeCCCCCCCCCcEEEEEEEECCCCCCCee
Confidence 6889999999875432 347889999999999642 22111 1 23333331 1
Q ss_pred -ccc-ceEEEeCCC-----------CcCCC-CCeEEEEec
Q 016941 99 -RSG-PFYFISGNH-----------DHCQK-GQKLIVVVL 124 (380)
Q Consensus 99 -kpG-~yYFICGV~-----------gHCq~-GMKLaInV~ 124 (380)
++| .||||+.-. |-|.. .|||.|.|.
T Consensus 105 F~pG~~YY~ISts~g~~~g~~~~~gG~C~~~~mkl~~~v~ 144 (145)
T PF00812_consen 105 FQPGHDYYYISTSTGTQEGLDNRRGGLCLSHNMKLRIKVG 144 (145)
T ss_dssp --TTEEEEEEEEESSSSTTTTSSBSCHHHEEEEEEEEECT
T ss_pred ecCCCeEEEEEccCCCCCCcccccccccCcCeeEEEEecC
Confidence 255 889998422 23754 799999885
No 18
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=91.49 E-value=1.5 Score=39.09 Aligned_cols=29 Identities=17% Similarity=0.262 Sum_probs=21.5
Q ss_pred cEEEec----ccc-ceEEEeCCCCcCCCCCeEEEE
Q 016941 93 SEFKLD----RSG-PFYFISGNHDHCQKGQKLIVV 122 (380)
Q Consensus 93 dvVtLd----kpG-~yYFICGV~gHCq~GMKLaIn 122 (380)
+.|+++ ++| .|=|||+.++|=. .||-.++
T Consensus 91 ~svtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~ 124 (125)
T TIGR02695 91 TSVTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTVK 124 (125)
T ss_pred EEEEEECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence 345554 367 4999999999986 6887764
No 19
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=90.04 E-value=39 Score=40.27 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=14.4
Q ss_pred EEEecc---ccceEE-EeCCCCcCCCCCeEE
Q 016941 94 EFKLDR---SGPFYF-ISGNHDHCQKGQKLI 120 (380)
Q Consensus 94 vVtLdk---pG~yYF-ICGV~gHCq~GMKLa 120 (380)
+|.|.. -|++.| +-...+.|..||.+.
T Consensus 1400 nImlgqlap~gTg~~d~~ld~e~l~~~~~~~ 1430 (1605)
T KOG0260|consen 1400 NIMLGQLAPMGTGCFDLMLDAEKLKKGIEIP 1430 (1605)
T ss_pred eeeecccccCCCcceeeeccHHhhhccCccC
Confidence 455544 244433 223446788887666
No 20
>PLN02604 oxidoreductase
Probab=90.00 E-value=1.5 Score=46.42 Aligned_cols=74 Identities=19% Similarity=0.257 Sum_probs=49.5
Q ss_pred CCCeEecCceeeeeeecCC----ceEEE--ec--ccC-CC------CCCCCCCccccCCCC---cEEEeccccceEEEeC
Q 016941 47 GRNRFLVNDTLFFKYKKGS----DSVLL--VN--KDD-YD------SCNTKKPLLKLDSGD---SEFKLDRSGPFYFISG 108 (380)
Q Consensus 47 S~kTF~VGDTLVFkY~aG~----HSVve--Vn--K~d-Yd------sCn~snpI~~fSsGn---dvVtLdkpG~yYFICG 108 (380)
-..+++.||+|++++.+.. |++.. +. ... +| .|.+ ..|. ..|+++.+|+|||=|-
T Consensus 55 P~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG~~~~tq~~i-------~pg~s~~y~f~~~~~Gt~wyH~H 127 (566)
T PLN02604 55 PTILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDGTEGVTQCPI-------LPGETFTYEFVVDRPGTYLYHAH 127 (566)
T ss_pred CcEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccccCCCccccCcc-------CCCCeEEEEEEcCCCEEEEEeeC
Confidence 3468999999999987752 23321 10 001 11 1221 2333 3688899999999999
Q ss_pred CCCcCCCCCeEEEEecCCC
Q 016941 109 NHDHCQKGQKLIVVVLHER 127 (380)
Q Consensus 109 V~gHCq~GMKLaInV~ass 127 (380)
...|-..||.-.|.|....
T Consensus 128 ~~~q~~~Gl~G~liV~~~~ 146 (566)
T PLN02604 128 YGMQREAGLYGSIRVSLPR 146 (566)
T ss_pred cHHHHhCCCeEEEEEEecC
Confidence 9899999999888887543
No 21
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=89.34 E-value=1.1 Score=44.11 Aligned_cols=76 Identities=18% Similarity=0.210 Sum_probs=48.6
Q ss_pred CeEecCceeeeeeecC-----CceEEEecccCCCCCCCCCCccccCCCC---cEEEeccccceEEEeCCC----CcCCCC
Q 016941 49 NRFLVNDTLFFKYKKG-----SDSVLLVNKDDYDSCNTKKPLLKLDSGD---SEFKLDRSGPFYFISGNH----DHCQKG 116 (380)
Q Consensus 49 kTF~VGDTLVFkY~aG-----~HSVveVnK~dYdsCn~snpI~~fSsGn---dvVtLdkpG~yYFICGV~----gHCq~G 116 (380)
.+++.||+|++.+.+. .|++..=-....+ -...+.....|. ..|+++.+|+|||-|... .|=..|
T Consensus 61 irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~~~d---g~~~~~~I~PG~t~ty~F~~~~~Gty~YH~H~~~~~~~q~~~G 137 (311)
T TIGR02376 61 IRVHEGDYVELTLINPPTNTMPHNVDFHAATGAL---GGAALTQVNPGETATLRFKATRPGAFVYHCAPPGMVPWHVVSG 137 (311)
T ss_pred EEEECCCEEEEEEEeCCCCCCceeeeecCCCccC---CCCcceeECCCCeEEEEEEcCCCEEEEEEcCCCCchhHHhhcC
Confidence 5789999999888765 3655431100000 001111133444 368889999999999954 477889
Q ss_pred CeEEEEecCCC
Q 016941 117 QKLIVVVLHER 127 (380)
Q Consensus 117 MKLaInV~ass 127 (380)
|.-.|.|....
T Consensus 138 l~G~liV~~~~ 148 (311)
T TIGR02376 138 MNGAIMVLPRE 148 (311)
T ss_pred cceEEEeeccC
Confidence 99999987643
No 22
>PRK02888 nitrous-oxide reductase; Validated
Probab=88.04 E-value=1.1 Score=48.84 Aligned_cols=71 Identities=10% Similarity=0.154 Sum_probs=42.8
Q ss_pred CCeEecCceeeeeeecCC--ceEEEecccCCCCCCCCCCccccCCCC---cEEEeccccceEEEeCCCCcCCC---CCeE
Q 016941 48 RNRFLVNDTLFFKYKKGS--DSVLLVNKDDYDSCNTKKPLLKLDSGD---SEFKLDRSGPFYFISGNHDHCQK---GQKL 119 (380)
Q Consensus 48 ~kTF~VGDTLVFkY~aG~--HSVveVnK~dYdsCn~snpI~~fSsGn---dvVtLdkpG~yYFICGV~gHCq~---GMKL 119 (380)
..++++||.+.|...+-. .+|.- .|......-. .....|. ..|+.+++|.|||+|+. .|.. +|+-
T Consensus 556 ~i~Vk~GDeVt~~lTN~d~~~DViH----GF~Ip~~nI~-~dv~PG~t~svtF~adkPGvy~~~Cte--fCGa~H~~M~G 628 (635)
T PRK02888 556 EFTVKQGDEVTVIVTNLDKVEDLTH----GFAIPNYGVN-MEVAPQATASVTFTADKPGVYWYYCTW--FCHALHMEMRG 628 (635)
T ss_pred eEEecCCCEEEEEEEeCCccccccc----ceeecccCcc-EEEcCCceEEEEEEcCCCEEEEEECCc--ccccCcccceE
Confidence 468999999999998621 11210 1111111101 1112333 36788999999999998 5644 6888
Q ss_pred EEEecC
Q 016941 120 IVVVLH 125 (380)
Q Consensus 120 aInV~a 125 (380)
.|.|..
T Consensus 629 ~~iVep 634 (635)
T PRK02888 629 RMLVEP 634 (635)
T ss_pred EEEEEe
Confidence 888864
No 23
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=86.94 E-value=39 Score=40.28 Aligned_cols=12 Identities=25% Similarity=0.351 Sum_probs=5.7
Q ss_pred CCCcEEEecccc
Q 016941 90 SGDSEFKLDRSG 101 (380)
Q Consensus 90 sGndvVtLdkpG 101 (380)
+|...+.|+...
T Consensus 1411 Tg~~d~~ld~e~ 1422 (1605)
T KOG0260|consen 1411 TGCFDLMLDAEK 1422 (1605)
T ss_pred CcceeeeccHHh
Confidence 444455555433
No 24
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=86.57 E-value=1.7 Score=37.29 Aligned_cols=66 Identities=17% Similarity=0.270 Sum_probs=40.9
Q ss_pred CCCeEecCceeeeeeecC--CceEEEecccCCCCCCCCCCcc-ccCCCC---cEEEeccccceEEEeCCCCcCCCC---C
Q 016941 47 GRNRFLVNDTLFFKYKKG--SDSVLLVNKDDYDSCNTKKPLL-KLDSGD---SEFKLDRSGPFYFISGNHDHCQKG---Q 117 (380)
Q Consensus 47 S~kTF~VGDTLVFkY~aG--~HSVveVnK~dYdsCn~snpI~-~fSsGn---dvVtLdkpG~yYFICGV~gHCq~G---M 117 (380)
+...+..|+.+.|+.... .|+...- ++. ++ ..-.|. ..|+.+++|.|++.|.. .|..| |
T Consensus 46 ~~l~lp~g~~v~~~ltS~DViHsf~ip---~~~-------~k~d~~PG~~~~~~~~~~~~G~y~~~C~e--~CG~gH~~M 113 (120)
T PF00116_consen 46 NELVLPAGQPVRFHLTSEDVIHSFWIP---ELG-------IKMDAIPGRTNSVTFTPDKPGTYYGQCAE--YCGAGHSFM 113 (120)
T ss_dssp SEEEEETTSEEEEEEEESSS-EEEEET---TCT-------EEEEEBTTCEEEEEEEESSSEEEEEEE-S--SSSTTGGG-
T ss_pred ceecccccceEeEEEEcCCcccccccc---ccC-------cccccccccceeeeeeeccCCcEEEcCcc--ccCcCcCCC
Confidence 344678889988888763 2544331 111 11 112333 35788999999999997 89877 8
Q ss_pred eEEEEec
Q 016941 118 KLIVVVL 124 (380)
Q Consensus 118 KLaInV~ 124 (380)
++.|.|.
T Consensus 114 ~~~v~VV 120 (120)
T PF00116_consen 114 PGKVIVV 120 (120)
T ss_dssp EEEEEEE
T ss_pred eEEEEEC
Confidence 8888763
No 25
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=86.42 E-value=3.1 Score=44.77 Aligned_cols=85 Identities=16% Similarity=0.236 Sum_probs=54.2
Q ss_pred CccCCCCCcccccCCCeEecCceeeeeeecCC---ceE------EEecccC--CCCCCCCCCccccCCCC---cEEEecc
Q 016941 34 WVTNPGENYNKWSGRNRFLVNDTLFFKYKKGS---DSV------LLVNKDD--YDSCNTKKPLLKLDSGD---SEFKLDR 99 (380)
Q Consensus 34 Wt~~P~~nYt~WAS~kTF~VGDTLVFkY~aG~---HSV------veVnK~d--YdsCn~snpI~~fSsGn---dvVtLdk 99 (380)
|+++ +..|.. ....+++.||.+++.+.+.. |.+ ++|...+ |.. ..+.+. ...|. ..|.++.
T Consensus 488 wtiN-G~~~~~-~~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~~~~G~~~~--~~dTv~-V~Pg~t~~~~f~ad~ 562 (587)
T TIGR01480 488 WSFD-GEAFGL-KTPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELEDGQGEFQV--RKHTVD-VPPGGKRSFRVTADA 562 (587)
T ss_pred EEEC-CccCCC-CCceEecCCCEEEEEEECCCCCCcceeEcCceeeeecCCCcccc--cCCcee-eCCCCEEEEEEECCC
Confidence 9886 233333 23578999999999998743 332 3332211 111 001111 12333 3678899
Q ss_pred ccceEEEeCCCCcCCCCCeEEEEe
Q 016941 100 SGPFYFISGNHDHCQKGQKLIVVV 123 (380)
Q Consensus 100 pG~yYFICGV~gHCq~GMKLaInV 123 (380)
+|+++|=|-+..|=+.||.-.|.|
T Consensus 563 pG~w~~HCH~l~H~~~GM~~~~~v 586 (587)
T TIGR01480 563 LGRWAYHCHMLLHMEAGMFREVTV 586 (587)
T ss_pred CeEEEEcCCCHHHHhCcCcEEEEe
Confidence 999999999999999999888876
No 26
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=86.42 E-value=0.61 Score=39.66 Aligned_cols=76 Identities=20% Similarity=0.261 Sum_probs=47.0
Q ss_pred CCeEecCceeeeeeecC---CceEEE--e--ccc-CCCC-C-CCCCCccccCCCC---cEEEecc-ccceEEEeCCCCcC
Q 016941 48 RNRFLVNDTLFFKYKKG---SDSVLL--V--NKD-DYDS-C-NTKKPLLKLDSGD---SEFKLDR-SGPFYFISGNHDHC 113 (380)
Q Consensus 48 ~kTF~VGDTLVFkY~aG---~HSVve--V--nK~-dYds-C-n~snpI~~fSsGn---dvVtLdk-pG~yYFICGV~gHC 113 (380)
.++++.||+|++++.+. .++|.. + ... ..|. . ..... ...|. ..|+++. +|+|||-|-...|=
T Consensus 27 tI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~---i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~ 103 (117)
T PF07732_consen 27 TIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCP---IAPGESFTYEFTANQQAGTYWYHSHVHGQQ 103 (117)
T ss_dssp EEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSS---BSTTEEEEEEEEESSCSEEEEEEECSTTHH
T ss_pred EEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCccccccee---EEeecceeeeEeeeccccceeEeeCCCchh
Confidence 45899999999999864 244433 1 111 0111 0 01111 12232 3788888 99999999998865
Q ss_pred CCCCeEEEEecCC
Q 016941 114 QKGQKLIVVVLHE 126 (380)
Q Consensus 114 q~GMKLaInV~as 126 (380)
..||--.|.|...
T Consensus 104 ~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 104 VMGLYGAIIVEPP 116 (117)
T ss_dssp HTTEEEEEEEE-T
T ss_pred cCcCEEEEEEcCC
Confidence 5899888887643
No 27
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=85.22 E-value=5.9 Score=40.88 Aligned_cols=28 Identities=21% Similarity=0.250 Sum_probs=20.1
Q ss_pred EEEeccccceEEEeCCCCcCCCCCeEEEEecCC
Q 016941 94 EFKLDRSGPFYFISGNHDHCQKGQKLIVVVLHE 126 (380)
Q Consensus 94 vVtLdkpG~yYFICGV~gHCq~GMKLaInV~as 126 (380)
+++| ++|+|.|+|+. | ..||-.|+|...
T Consensus 91 ~~~L-~pGtY~~~C~~--~--~~~~g~l~Vtg~ 118 (375)
T PRK10378 91 TANL-QPGEYDMTCGL--L--TNPKGKLIVKGE 118 (375)
T ss_pred EEec-CCceEEeecCc--C--CCCCceEEEeCC
Confidence 4566 69999999976 4 335667777653
No 28
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=85.03 E-value=2.3 Score=39.14 Aligned_cols=70 Identities=14% Similarity=0.154 Sum_probs=41.8
Q ss_pred CCeEecCceeeeeeecCCceEEEecccCCCCCCCCCCccccCCCC---cEEEeccccceEEEeCCCCcCCC---CCeEEE
Q 016941 48 RNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKPLLKLDSGD---SEFKLDRSGPFYFISGNHDHCQK---GQKLIV 121 (380)
Q Consensus 48 ~kTF~VGDTLVFkY~aG~HSVveVnK~dYdsCn~snpI~~fSsGn---dvVtLdkpG~yYFICGV~gHCq~---GMKLaI 121 (380)
...+.+|+.++|.-.. .||+- +|.-=+..... ..-.|. ..++.+++|.|++.|.. .|.. .|++.|
T Consensus 118 ~l~vp~g~~v~~~~ts--~DV~H----sf~ip~~~~k~-da~PG~~~~~~~~~~~~G~y~~~c~e--~cG~~h~~M~~~v 188 (201)
T TIGR02866 118 ELVVPAGTPVRLQVTS--KDVIH----SFWVPELGGKI-DAIPGQYNALWFNADEPGVYYGYCAE--LCGAGHSLMLFKV 188 (201)
T ss_pred EEEEEcCCEEEEEEEe--Cchhh----cccccccCceE-EecCCcEEEEEEEeCCCEEEEEEehh--hCCcCccCCeEEE
Confidence 3467888888888765 33321 11111111110 011232 25788999999999997 6655 499999
Q ss_pred EecCC
Q 016941 122 VVLHE 126 (380)
Q Consensus 122 nV~as 126 (380)
.|...
T Consensus 189 ~v~~~ 193 (201)
T TIGR02866 189 VVVER 193 (201)
T ss_pred EEECH
Confidence 88753
No 29
>PLN02354 copper ion binding / oxidoreductase
Probab=84.40 E-value=5.1 Score=42.75 Aligned_cols=74 Identities=11% Similarity=0.085 Sum_probs=47.6
Q ss_pred CeEecCceeeeeeecCC--------ceEEEecccC-----CCCCCCCCCccccCCCCcEEEe-ccccceEEEeCCCCcCC
Q 016941 49 NRFLVNDTLFFKYKKGS--------DSVLLVNKDD-----YDSCNTKKPLLKLDSGDSEFKL-DRSGPFYFISGNHDHCQ 114 (380)
Q Consensus 49 kTF~VGDTLVFkY~aG~--------HSVveVnK~d-----YdsCn~snpI~~fSsGndvVtL-dkpG~yYFICGV~gHCq 114 (380)
++++.||+|+.+..+.. |-+.+..... +..|-+.-. .+=..+|++ +..|+|||=+-...+-.
T Consensus 60 I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~TQcpI~PG----~sf~Y~F~~~~q~GT~WYHsH~~~Q~~ 135 (552)
T PLN02354 60 INSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPGTNCPIPPG----TNFTYHFQPKDQIGSYFYYPSTGMHRA 135 (552)
T ss_pred EEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcCCcCCCCCC----CcEEEEEEeCCCCcceEEecCccceec
Confidence 47899999999887642 4455432211 223522211 111136777 47899999998877888
Q ss_pred CCCeEEEEecCC
Q 016941 115 KGQKLIVVVLHE 126 (380)
Q Consensus 115 ~GMKLaInV~as 126 (380)
.||.-.|.|...
T Consensus 136 ~Gl~G~lII~~~ 147 (552)
T PLN02354 136 AGGFGGLRVNSR 147 (552)
T ss_pred CCccceEEEcCC
Confidence 899888888654
No 30
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=79.98 E-value=1.3 Score=37.40 Aligned_cols=24 Identities=25% Similarity=0.156 Sum_probs=12.8
Q ss_pred CcchhHHHHHHH--HHHHHhhcccce
Q 016941 1 MEFQKSLCLSLA--LFAFFISSSHAL 24 (380)
Q Consensus 1 Ma~~k~l~llLa--LLAaL~s~AsA~ 24 (380)
|++|++|+|.|+ +|+++++.++|+
T Consensus 1 MaSK~~llL~l~LA~lLlisSevaa~ 26 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVAAR 26 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhhH
Confidence 998876665433 233333444444
No 31
>PLN02835 oxidoreductase
Probab=79.45 E-value=9.8 Score=40.48 Aligned_cols=70 Identities=16% Similarity=0.252 Sum_probs=46.3
Q ss_pred CeEecCceeeeeeecCC--------ceEEEecccCCC-----CCCCCCCccccCCCC---cEEEe-ccccceEEEeCCCC
Q 016941 49 NRFLVNDTLFFKYKKGS--------DSVLLVNKDDYD-----SCNTKKPLLKLDSGD---SEFKL-DRSGPFYFISGNHD 111 (380)
Q Consensus 49 kTF~VGDTLVFkY~aG~--------HSVveVnK~dYd-----sCn~snpI~~fSsGn---dvVtL-dkpG~yYFICGV~g 111 (380)
++++.||+|+.+..+.. |-+.+......| .|- | ..|. .+|++ +..|+|||=|-...
T Consensus 62 I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv~~tQ~p----I---~PG~sf~Y~F~~~~q~GT~WYHsH~~~ 134 (539)
T PLN02835 62 LDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCP----I---PPNSNYTYKFQTKDQIGTFTYFPSTLF 134 (539)
T ss_pred EEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCCccCcCC----C---CCCCcEEEEEEECCCCEeEEEEeCccc
Confidence 48899999999987642 444443221122 242 2 1222 36776 57999999998777
Q ss_pred cCCCCCeEEEEecC
Q 016941 112 HCQKGQKLIVVVLH 125 (380)
Q Consensus 112 HCq~GMKLaInV~a 125 (380)
+-..|+.-.|.|..
T Consensus 135 q~~~Gl~G~lIV~~ 148 (539)
T PLN02835 135 HKAAGGFGAINVYE 148 (539)
T ss_pred hhcCcccceeEEeC
Confidence 77889988888854
No 32
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=78.12 E-value=17 Score=39.59 Aligned_cols=75 Identities=15% Similarity=0.195 Sum_probs=49.2
Q ss_pred CeEecCceeeeeeecCC--------ceEEEecc---c--CCCCCCCCCCccccCCCCcEEEe-ccccceEEEeCCCCcCC
Q 016941 49 NRFLVNDTLFFKYKKGS--------DSVLLVNK---D--DYDSCNTKKPLLKLDSGDSEFKL-DRSGPFYFISGNHDHCQ 114 (380)
Q Consensus 49 kTF~VGDTLVFkY~aG~--------HSVveVnK---~--dYdsCn~snpI~~fSsGndvVtL-dkpG~yYFICGV~gHCq 114 (380)
++++.||+|+.+..+.. |-|.|... | .+..|-+.-. .+=..+|++ +..|+|||=+-...+-.
T Consensus 62 I~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DGv~~TQcPI~PG----~sftY~F~~~dq~GT~WYHsH~~~Q~~ 137 (596)
T PLN00044 62 LNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQDGVGGTNCAIPAG----WNWTYQFQVKDQVGSFFYAPSTALHRA 137 (596)
T ss_pred EEEECCCEEEEEEEeCCCCCccEEECCccCCCCccccCCCCCcCCcCCC----CcEEEEEEeCCCCceeEeeccchhhhh
Confidence 47899999999886642 44544321 1 2234532211 111146888 57999999998888888
Q ss_pred CCCeEEEEecCCC
Q 016941 115 KGQKLIVVVLHER 127 (380)
Q Consensus 115 ~GMKLaInV~ass 127 (380)
.|+.-.|.|....
T Consensus 138 ~Gl~GalII~~~~ 150 (596)
T PLN00044 138 AGGYGAITINNRD 150 (596)
T ss_pred CcCeeEEEEcCcc
Confidence 8999999887644
No 33
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=77.75 E-value=3.6 Score=39.99 Aligned_cols=72 Identities=15% Similarity=0.225 Sum_probs=45.9
Q ss_pred CCeEecCceeeeeeecCCceEEEecccCCCCCCCCCCccccCCC---CcEEEeccccceEEEeCCCCcCCCC---CeEEE
Q 016941 48 RNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKKPLLKLDSG---DSEFKLDRSGPFYFISGNHDHCQKG---QKLIV 121 (380)
Q Consensus 48 ~kTF~VGDTLVFkY~aG~HSVveVnK~dYdsCn~snpI~~fSsG---ndvVtLdkpG~yYFICGV~gHCq~G---MKLaI 121 (380)
...+-+|..++|+-... ||+- +|..=.+...+.. -.| ...++.+++|.|+++|.. .|..| |++.|
T Consensus 138 ~l~lPv~~~V~f~ltS~--DViH----sF~IP~l~~k~d~-iPG~~~~~~~~~~~~G~Y~g~Cae--~CG~gH~~M~~~v 208 (247)
T COG1622 138 ELVLPVGRPVRFKLTSA--DVIH----SFWIPQLGGKIDA-IPGMTTELWLTANKPGTYRGICAE--YCGPGHSFMRFKV 208 (247)
T ss_pred eEEEeCCCeEEEEEEec--hhce----eEEecCCCceeee-cCCceEEEEEecCCCeEEEEEcHh--hcCCCcccceEEE
Confidence 34788889999988764 3321 1221222211111 122 235788999999999987 88765 99999
Q ss_pred EecCCCC
Q 016941 122 VVLHERP 128 (380)
Q Consensus 122 nV~asss 128 (380)
.|.....
T Consensus 209 ~vvs~~~ 215 (247)
T COG1622 209 IVVSQED 215 (247)
T ss_pred EEEcHHH
Confidence 9987754
No 34
>PRK09723 putative fimbrial-like adhesin protein; Provisional
Probab=77.74 E-value=18 Score=38.14 Aligned_cols=13 Identities=23% Similarity=0.450 Sum_probs=8.9
Q ss_pred ccceEEEecCCCC
Q 016941 21 SHALKFNVGGKHG 33 (380)
Q Consensus 21 AsA~tyvVGGs~G 33 (380)
+....|+||+..|
T Consensus 25 ~~~~~~~vg~~~~ 37 (421)
T PRK09723 25 DDNVSYIVGNYYG 37 (421)
T ss_pred cCceEEEEccccc
Confidence 3467899998543
No 35
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=74.61 E-value=5.3 Score=33.24 Aligned_cols=78 Identities=18% Similarity=0.215 Sum_probs=48.6
Q ss_pred CCeEecCceeeeeeecC---Cce---------EEEecccCC----------CCCCCCCCccccCCCCc--EEEeccccce
Q 016941 48 RNRFLVNDTLFFKYKKG---SDS---------VLLVNKDDY----------DSCNTKKPLLKLDSGDS--EFKLDRSGPF 103 (380)
Q Consensus 48 ~kTF~VGDTLVFkY~aG---~HS---------VveVnK~dY----------dsCn~snpI~~fSsGnd--vVtLdkpG~y 103 (380)
...++.||.+++.+.+. .|. |+..+...+ +.+...+-+.....|.. .|..+.+|.+
T Consensus 35 ~~~~~~g~~v~~~l~N~~~~~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~~~G~w 114 (138)
T PF07731_consen 35 VIEVKNGDVVEIVLQNNGSMPHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRADNPGPW 114 (138)
T ss_dssp EEEEETTSEEEEEEEECTTSSEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEETSTEEE
T ss_pred eEEEeCCCEEEEEEECCCCCccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEeecceEE
Confidence 34789999998888753 233 233332222 11112222222223332 5678899999
Q ss_pred EEEeCCCCcCCCCCeEEEEecC
Q 016941 104 YFISGNHDHCQKGQKLIVVVLH 125 (380)
Q Consensus 104 YFICGV~gHCq~GMKLaInV~a 125 (380)
.|=|-+..|=..||...|.|..
T Consensus 115 ~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 115 LFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp EEEESSHHHHHTT-EEEEEECH
T ss_pred EEEEchHHHHhCCCeEEEEEcC
Confidence 9999999999999999999864
No 36
>TIGR02228 sigpep_I_arch signal peptidase I, archaeal type. This model represents signal peptidase I from most archaea, a subunit of the eukaryotic endoplasmic reticulum signal peptidase I complex, and an apparent signal peptidase I from a small number of bacteria. It is related to but does not overlap in hits with TIGR02227, the bacterial and mitochondrial signal peptidase I.
Probab=67.31 E-value=12 Score=33.86 Aligned_cols=26 Identities=23% Similarity=0.301 Sum_probs=18.4
Q ss_pred CCeEecCceeeeeeecC-C---ceEEEecc
Q 016941 48 RNRFLVNDTLFFKYKKG-S---DSVLLVNK 73 (380)
Q Consensus 48 ~kTF~VGDTLVFkY~aG-~---HSVveVnK 73 (380)
...++.||.++|+...+ . |-|+.+.+
T Consensus 58 ~~~~~~GDIVvf~~~~~~~~iihRVi~v~~ 87 (158)
T TIGR02228 58 PNDIQVGDVITYKSPGFNTPVTHRVIEINN 87 (158)
T ss_pred cCCCCCCCEEEEEECCCCccEEEEEEEEEC
Confidence 35789999999998764 2 55555543
No 37
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=66.94 E-value=4.4 Score=39.05 Aligned_cols=53 Identities=17% Similarity=0.389 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhhcccceEEEecCCCCCccCCCCCcccccCCCeEecCceeeeee
Q 016941 6 SLCLSLALFAFFISSSHALKFNVGGKHGWVTNPGENYNKWSGRNRFLVNDTLFFKY 61 (380)
Q Consensus 6 ~l~llLaLLAaL~s~AsA~tyvVGGs~GWt~~P~~nYt~WAS~kTF~VGDTLVFkY 61 (380)
+++++|+.+++.+..-+...|.+++.+||.+-| ++..|.+ .-..+=|.+.|-+
T Consensus 206 l~i~~~l~~~~Y~i~g~~~n~~~~g~~g~e~iP--~~dfw~~-lP~l~kd~~~~v~ 258 (268)
T PF09451_consen 206 LFIILFLFLAAYLIFGSWYNYNRYGARGFELIP--HFDFWRS-LPYLIKDGVRFVV 258 (268)
T ss_pred HHHHHHHHHHHHhhhhhheeeccCCCCCceecc--cHhHHHh-chHHHHHHHHHhh
Confidence 333333333333455566789999999998865 4567765 4444555555543
No 38
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=66.90 E-value=11 Score=39.71 Aligned_cols=73 Identities=16% Similarity=0.226 Sum_probs=49.2
Q ss_pred CCeEecCceeeeeeecCC----ceEEE----ecccC-CC------CCCCCCCccccCCCC---cEEEeccccceEEEeCC
Q 016941 48 RNRFLVNDTLFFKYKKGS----DSVLL----VNKDD-YD------SCNTKKPLLKLDSGD---SEFKLDRSGPFYFISGN 109 (380)
Q Consensus 48 ~kTF~VGDTLVFkY~aG~----HSVve----VnK~d-Yd------sCn~snpI~~fSsGn---dvVtLdkpG~yYFICGV 109 (380)
..+++.||.|+++..+.. ++|.. +.... .| .|-+ ..|. ..|+++.+|+|||-|-.
T Consensus 33 ~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~I-------~PG~s~~y~f~~~~~Gt~wyH~H~ 105 (541)
T TIGR03388 33 TIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCAI-------NPGETFIYNFVVDRPGTYFYHGHY 105 (541)
T ss_pred eEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCCc-------CCCCEEEEEEEcCCCEEEEEEecc
Confidence 458999999999887752 22221 11111 11 1221 2333 36888999999999999
Q ss_pred CCcCCCCCeEEEEecCCC
Q 016941 110 HDHCQKGQKLIVVVLHER 127 (380)
Q Consensus 110 ~gHCq~GMKLaInV~ass 127 (380)
..|-..||.-.|.|....
T Consensus 106 ~~q~~~Gl~G~liV~~~~ 123 (541)
T TIGR03388 106 GMQRSAGLYGSLIVDVPD 123 (541)
T ss_pred hHHhhccceEEEEEecCC
Confidence 889999999999987653
No 39
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=62.44 E-value=9.5 Score=35.76 Aligned_cols=32 Identities=25% Similarity=0.374 Sum_probs=26.9
Q ss_pred EEEeccccceEEEeCCCCcCCCC---CeEEEEecCCC
Q 016941 94 EFKLDRSGPFYFISGNHDHCQKG---QKLIVVVLHER 127 (380)
Q Consensus 94 vVtLdkpG~yYFICGV~gHCq~G---MKLaInV~ass 127 (380)
.++.+++|.|++.|.. .|..| |++.|.|....
T Consensus 159 ~~~~~~~G~y~g~C~e--~CG~~H~~M~~~v~v~~~~ 193 (194)
T MTH00047 159 FFCPDRHGVFVGYCSE--LCGVGHSYMPIVIEVVDVD 193 (194)
T ss_pred EEEcCCCEEEEEEeeh--hhCcCcccCcEEEEEEcCC
Confidence 4677999999999987 88765 99999998764
No 40
>PLN02191 L-ascorbate oxidase
Probab=61.89 E-value=29 Score=37.23 Aligned_cols=70 Identities=13% Similarity=0.208 Sum_probs=46.7
Q ss_pred CeEecCceeeeeeecCC---------ceEEEecccCCC------CCCCCCCccccCCCC---cEEEeccccceEEEeCCC
Q 016941 49 NRFLVNDTLFFKYKKGS---------DSVLLVNKDDYD------SCNTKKPLLKLDSGD---SEFKLDRSGPFYFISGNH 110 (380)
Q Consensus 49 kTF~VGDTLVFkY~aG~---------HSVveVnK~dYd------sCn~snpI~~fSsGn---dvVtLdkpG~yYFICGV~ 110 (380)
++++.||+|+.+..+.. |.+.+....-+| .|-+ ..|. ..|+++..|+|||=|-..
T Consensus 56 i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gvtq~pI-------~PG~s~~Y~f~~~~~GT~wYHsH~~ 128 (574)
T PLN02191 56 IDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGVTQCAI-------NPGETFTYKFTVEKPGTHFYHGHYG 128 (574)
T ss_pred EEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCccccCCc-------CCCCeEEEEEECCCCeEEEEeeCcH
Confidence 47899999998887642 222221111111 1321 1232 368889999999999988
Q ss_pred CcCCCCCeEEEEecC
Q 016941 111 DHCQKGQKLIVVVLH 125 (380)
Q Consensus 111 gHCq~GMKLaInV~a 125 (380)
.+-..||.-.|.|..
T Consensus 129 ~q~~~Gl~G~liV~~ 143 (574)
T PLN02191 129 MQRSAGLYGSLIVDV 143 (574)
T ss_pred HHHhCCCEEEEEEcc
Confidence 888999998888863
No 41
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=60.02 E-value=16 Score=33.14 Aligned_cols=36 Identities=14% Similarity=0.288 Sum_probs=28.5
Q ss_pred CeEecCceeeeeeec-----CCceEEEecccCCCCCCCCCC
Q 016941 49 NRFLVNDTLFFKYKK-----GSDSVLLVNKDDYDSCNTKKP 84 (380)
Q Consensus 49 kTF~VGDTLVFkY~a-----G~HSVveVnK~dYdsCn~snp 84 (380)
...+-||++++.... ..|+.+.++.+.+.+|+....
T Consensus 74 ~~~q~GDI~I~g~~g~S~G~~GHtgif~~~~~iIhc~y~~~ 114 (145)
T PF05382_consen 74 WNLQRGDIFIWGRRGNSAGAGGHTGIFMDNDTIIHCNYGAN 114 (145)
T ss_pred ccccCCCEEEEcCCCCCCCCCCeEEEEeCCCcEEEecCCCC
Confidence 468999999986652 359999999999999997543
No 42
>PF02839 CBM_5_12: Carbohydrate binding domain; InterPro: IPR003610 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM5 from CAZY and CBM12 from CAZY. These modules have a core structure consisting of a 3-stranded meander beta-sheet, which contain six aromatic groups that may be important for binding. CBM5/12 is found in proteins such as chitinase A1, chitinase B [], and endoglucanase Z []. The overall topology of the CBM is structurally similar to the C-terminal chitin-binding domains (ChBD) of chitinase A1 and chitinase B, however the binding mechanism for the ChBD may be different from that of the CBM [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0005576 extracellular region; PDB: 1ED7_A 1W1V_A 1E15_B 1UR8_A 1E6Z_B 1E6P_A 1W1T_A 1W1P_B 1UR9_A 1E6R_A ....
Probab=59.12 E-value=5.8 Score=27.63 Aligned_cols=19 Identities=16% Similarity=0.543 Sum_probs=11.4
Q ss_pred cccccCCCeEecCceeeee
Q 016941 42 YNKWSGRNRFLVNDTLFFK 60 (380)
Q Consensus 42 Yt~WAS~kTF~VGDTLVFk 60 (380)
|.+|..++....||++.|+
T Consensus 1 ~p~W~~~~~Y~~Gd~V~~~ 19 (41)
T PF02839_consen 1 YPAWDPGTTYNAGDRVSYN 19 (41)
T ss_dssp --B--TTCEE-TT-EEEET
T ss_pred CCCcCCCCEEcCCCEEEEC
Confidence 5689999999999999864
No 43
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=58.69 E-value=84 Score=34.22 Aligned_cols=120 Identities=17% Similarity=0.147 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhhcccce----EEEecCCCCCccCCCCCcccccCC---------CeEecCceeeeeeecCC-----
Q 016941 4 QKSLCLSLALFAFFISSSHAL----KFNVGGKHGWVTNPGENYNKWSGR---------NRFLVNDTLFFKYKKGS----- 65 (380)
Q Consensus 4 ~k~l~llLaLLAaL~s~AsA~----tyvVGGs~GWt~~P~~nYt~WAS~---------kTF~VGDTLVFkY~aG~----- 65 (380)
.+.++++++++++++..+.++ ++.|. |......-..++.-. +.+..||+|+.+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~v~----~~~~s~l~~~~~vi~iNG~fPGP~I~~~~gD~ivV~v~N~~~~~~s 82 (563)
T KOG1263|consen 7 LLLLFLCGSLLLVFFSQAEAPIRFHTWKVT----YGTASPLCVEKQVITINGQFPGPTINAEEGDTIVVNVVNRLDEPFS 82 (563)
T ss_pred hhHHHHHHHHHHHHHhhhcCceEEEEeeEE----eeeeccCCccceeEeecCCCCCCeEEEEeCCEEEEEEEeCCCCceE
Q ss_pred ---ceEEEecccCC------CCCCCCCCccccCCCCcEEEec-cccceEEEeCCCCcCCCCCeEEEEecCCCCCCCC
Q 016941 66 ---DSVLLVNKDDY------DSCNTKKPLLKLDSGDSEFKLD-RSGPFYFISGNHDHCQKGQKLIVVVLHERPPPPS 132 (380)
Q Consensus 66 ---HSVveVnK~dY------dsCn~snpI~~fSsGndvVtLd-kpG~yYFICGV~gHCq~GMKLaInV~asss~p~s 132 (380)
|-|.+ .+..| ..| .-.+-.+|. ..|+++ +.|++|+.....-|-..|+.-.+.|......+.+
T Consensus 83 ihWhGv~q-~kn~w~DG~~~TqC-PI~Pg~~~t---Y~F~v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~~~p~p 154 (563)
T KOG1263|consen 83 IHWHGVRQ-RKNPWQDGVYITQC-PIQPGENFT---YRFTVKDQIGTLWYHSHVSWQRATGVFGALIINPRPGLPVP 154 (563)
T ss_pred EEeccccc-cCCccccCCccccC-CcCCCCeEE---EEEEeCCcceeEEEeeccccccccCceeEEEEcCCccCCCC
No 44
>PLN02168 copper ion binding / pectinesterase
Probab=58.43 E-value=47 Score=35.66 Aligned_cols=76 Identities=11% Similarity=0.143 Sum_probs=47.4
Q ss_pred CCeEecCceeeeeeecCC--------ceEEEecc---cC--CCCCCCCCCccccCCCCcEEEec-cccceEEEeCCCCcC
Q 016941 48 RNRFLVNDTLFFKYKKGS--------DSVLLVNK---DD--YDSCNTKKPLLKLDSGDSEFKLD-RSGPFYFISGNHDHC 113 (380)
Q Consensus 48 ~kTF~VGDTLVFkY~aG~--------HSVveVnK---~d--YdsCn~snpI~~fSsGndvVtLd-kpG~yYFICGV~gHC 113 (380)
.++++.||+|+.+..+.. |-+.+.+. +. +..|-+.-. .+=...|+++ ..|+|||=+-...+=
T Consensus 58 ~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~gtQcpI~PG----~sftY~F~~~~q~GT~WYHsH~~~Q~ 133 (545)
T PLN02168 58 LLNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRGTNCPILPG----TNWTYRFQVKDQIGSYFYFPSLLLQK 133 (545)
T ss_pred cEEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCCCcCCCCCC----CcEEEEEEeCCCCceEEEecChhhhh
Confidence 358999999999997743 44444322 11 122422111 1111478884 799999998766666
Q ss_pred CCCCeEEEEecCCC
Q 016941 114 QKGQKLIVVVLHER 127 (380)
Q Consensus 114 q~GMKLaInV~ass 127 (380)
..|+.-.|.|....
T Consensus 134 ~~GL~G~lII~~~~ 147 (545)
T PLN02168 134 AAGGYGAIRIYNPE 147 (545)
T ss_pred hCcceeEEEEcCCc
Confidence 77998888887543
No 45
>PHA03247 large tegument protein UL36; Provisional
Probab=57.48 E-value=5.8e+02 Score=33.67 Aligned_cols=10 Identities=50% Similarity=1.066 Sum_probs=5.4
Q ss_pred CCCCCCCCCC
Q 016941 328 SSNPAGGTPP 337 (380)
Q Consensus 328 ~~~~~~~~~~ 337 (380)
+.-|+++.+|
T Consensus 2821 ~~~Pa~~~PP 2830 (3151)
T PHA03247 2821 AASPAGPLPP 2830 (3151)
T ss_pred CCCCCCCCCC
Confidence 3445666655
No 46
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=55.61 E-value=55 Score=31.28 Aligned_cols=31 Identities=19% Similarity=0.241 Sum_probs=25.4
Q ss_pred EEEeccccceEEEeCCCCcCCCC---CeEEEEecCC
Q 016941 94 EFKLDRSGPFYFISGNHDHCQKG---QKLIVVVLHE 126 (380)
Q Consensus 94 vVtLdkpG~yYFICGV~gHCq~G---MKLaInV~as 126 (380)
.++.+++|.|+-.|.. .|..| |++.|.|...
T Consensus 182 ~~~~~~~G~y~g~CaE--~CG~~Ha~M~~~V~v~~~ 215 (226)
T TIGR01433 182 HLIANEPGVYDGISAN--YSGPGFSGMKFKAIATDR 215 (226)
T ss_pred EEEeCCCEEEEEEchh--hcCcCccCCeEEEEEECH
Confidence 5788999999999986 78765 8988887653
No 47
>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=54.93 E-value=9.8 Score=33.01 Aligned_cols=16 Identities=25% Similarity=0.472 Sum_probs=12.8
Q ss_pred CCeEecCceeeeeeec
Q 016941 48 RNRFLVNDTLFFKYKK 63 (380)
Q Consensus 48 ~kTF~VGDTLVFkY~a 63 (380)
.++|++||.|+|+--.
T Consensus 29 r~~ikvGD~I~f~~~~ 44 (109)
T cd06555 29 RQQIKVGDKILFNDLD 44 (109)
T ss_pred hhcCCCCCEEEEEEcC
Confidence 3689999999996643
No 48
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=54.49 E-value=39 Score=36.63 Aligned_cols=74 Identities=16% Similarity=0.182 Sum_probs=44.9
Q ss_pred CCeEecCceeeeeeecCC---ceEEE----ecccCCCC-CCCCC-CccccCCCC---cEEEeccccceEEEeCCCCcCCC
Q 016941 48 RNRFLVNDTLFFKYKKGS---DSVLL----VNKDDYDS-CNTKK-PLLKLDSGD---SEFKLDRSGPFYFISGNHDHCQK 115 (380)
Q Consensus 48 ~kTF~VGDTLVFkY~aG~---HSVve----VnK~dYds-Cn~sn-pI~~fSsGn---dvVtLdkpG~yYFICGV~gHCq~ 115 (380)
..+++.||.|+.++.+.. ++|.. +. ...|. +.... +| ..|. ..|++..+|+|||=|-...+=+.
T Consensus 77 ~ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~-~~~DGvP~vt~~~I---~PG~s~~Y~f~~~~~GTyWYHsH~~~q~~~ 152 (587)
T TIGR01480 77 LLRWREGDTVRLRVTNTLPEDTSIHWHGILLP-FQMDGVPGVSFAGI---APGETFTYRFPVRQSGTYWYHSHSGFQEQA 152 (587)
T ss_pred eEEEECCCEEEEEEEcCCCCCceEEcCCCcCC-ccccCCCccccccc---CCCCeEEEEEECCCCeeEEEecCchhHhhc
Confidence 347899999999997643 22211 11 01111 11111 11 1232 36888899999999987767778
Q ss_pred CCeEEEEecC
Q 016941 116 GQKLIVVVLH 125 (380)
Q Consensus 116 GMKLaInV~a 125 (380)
|+.-.|.|..
T Consensus 153 GL~G~lIV~~ 162 (587)
T TIGR01480 153 GLYGPLIIDP 162 (587)
T ss_pred cceEEEEECC
Confidence 9987777764
No 49
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=49.50 E-value=72 Score=25.37 Aligned_cols=18 Identities=17% Similarity=0.370 Sum_probs=14.9
Q ss_pred eEecCceeeeeeecCCce
Q 016941 50 RFLVNDTLFFKYKKGSDS 67 (380)
Q Consensus 50 TF~VGDTLVFkY~aG~HS 67 (380)
.|++||.|.|.+....+.
T Consensus 2 ~~~~Ge~v~~~~~~~~~~ 19 (83)
T PF14326_consen 2 VYRVGERVRFRVTSNRDG 19 (83)
T ss_pred cccCCCEEEEEEEeCCCe
Confidence 689999999999876544
No 50
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see IPR001471 from INTERPRO) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors []. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1WID_A 1YEL_A.
Probab=49.11 E-value=6.3 Score=31.10 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=12.4
Q ss_pred cCCCeEecCceeeeeeecCC
Q 016941 46 SGRNRFLVNDTLFFKYKKGS 65 (380)
Q Consensus 46 AS~kTF~VGDTLVFkY~aG~ 65 (380)
+..+.+++||.++|.+....
T Consensus 69 v~~n~L~~GD~~~F~~~~~~ 88 (100)
T PF02362_consen 69 VRDNGLKEGDVCVFELIGNS 88 (100)
T ss_dssp HHHCT--TT-EEEEEE-SSS
T ss_pred HHHcCCCCCCEEEEEEecCC
Confidence 35678999999999998643
No 51
>PRK13838 conjugal transfer pilin processing protease TraF; Provisional
Probab=48.35 E-value=9.5 Score=35.08 Aligned_cols=15 Identities=20% Similarity=0.191 Sum_probs=12.4
Q ss_pred CCeEecCceeeeeee
Q 016941 48 RNRFLVNDTLFFKYK 62 (380)
Q Consensus 48 ~kTF~VGDTLVFkY~ 62 (380)
...++.||.++|+..
T Consensus 48 ~~~~~rGDiVvf~~P 62 (176)
T PRK13838 48 DRPVAVGDLVFICPP 62 (176)
T ss_pred CCCCCCCcEEEEECC
Confidence 457899999999864
No 52
>PRK11372 lysozyme inhibitor; Provisional
Probab=47.61 E-value=77 Score=27.37 Aligned_cols=10 Identities=20% Similarity=0.484 Sum_probs=6.9
Q ss_pred Cceeeeeeec
Q 016941 54 NDTLFFKYKK 63 (380)
Q Consensus 54 GDTLVFkY~a 63 (380)
+|.+.|.|+.
T Consensus 50 ~~~v~l~~~~ 59 (109)
T PRK11372 50 RQEVSFVYDN 59 (109)
T ss_pred CCeEEEEECC
Confidence 6777777754
No 53
>PLN02991 oxidoreductase
Probab=47.55 E-value=94 Score=33.49 Aligned_cols=74 Identities=15% Similarity=0.165 Sum_probs=45.1
Q ss_pred CeEecCceeeeeeecCC--------ceEEEecc---cC--CCCCCCCCCccccCCCCcEEEe-ccccceEEEeCCCCcCC
Q 016941 49 NRFLVNDTLFFKYKKGS--------DSVLLVNK---DD--YDSCNTKKPLLKLDSGDSEFKL-DRSGPFYFISGNHDHCQ 114 (380)
Q Consensus 49 kTF~VGDTLVFkY~aG~--------HSVveVnK---~d--YdsCn~snpI~~fSsGndvVtL-dkpG~yYFICGV~gHCq 114 (380)
++++.||+|+.+..+.. |-+.+... |. ...|-+.-. .+=...|++ +..|+|||=+-...+-.
T Consensus 61 I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv~~tQcpI~PG----~sftY~F~~~~q~GT~WYHsH~~~q~~ 136 (543)
T PLN02991 61 IISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGVYGTTCPIPPG----KNYTYALQVKDQIGSFYYFPSLGFHKA 136 (543)
T ss_pred EEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCCCCCCCccCCC----CcEEEEEEeCCCCcceEEecCcchhhh
Confidence 47899999999887643 44444211 11 122422211 111136788 57999999887766666
Q ss_pred CCCeEEEEecCC
Q 016941 115 KGQKLIVVVLHE 126 (380)
Q Consensus 115 ~GMKLaInV~as 126 (380)
.|+.-.|.|...
T Consensus 137 ~Gl~G~lIV~~~ 148 (543)
T PLN02991 137 AGGFGAIRISSR 148 (543)
T ss_pred CCCeeeEEEeCC
Confidence 688777777654
No 54
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=43.52 E-value=7.8 Score=35.01 Aligned_cols=25 Identities=36% Similarity=0.492 Sum_probs=1.2
Q ss_pred ccccccchhhhHHHHHHhhhceeEE
Q 016941 353 AVSTPLSLGLLGVSLVLGLVSGIIF 377 (380)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (380)
.+--++..+.|+|.|||||++|+|.
T Consensus 76 ~l~~pi~~sal~v~lVl~llsg~lv 100 (129)
T PF12191_consen 76 PLLWPILGSALSVVLVLALLSGFLV 100 (129)
T ss_dssp SSS----------------------
T ss_pred ceehhhhhhHHHHHHHHHHHHHHHH
Confidence 3444555666666677777766653
No 55
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=42.29 E-value=30 Score=32.85 Aligned_cols=31 Identities=23% Similarity=0.406 Sum_probs=25.6
Q ss_pred EEEeccccceEEEeCCCCcCCCC---CeEEEEecCC
Q 016941 94 EFKLDRSGPFYFISGNHDHCQKG---QKLIVVVLHE 126 (380)
Q Consensus 94 vVtLdkpG~yYFICGV~gHCq~G---MKLaInV~as 126 (380)
.++.+++|.||..|.. .|..| |++.|.|...
T Consensus 183 ~~~~~~~g~y~~~C~e--~CG~~H~~M~~~v~v~~~ 216 (228)
T MTH00140 183 SFEPKRPGVFYGQCSE--ICGANHSFMPIVVEAVPL 216 (228)
T ss_pred EEEeCCCEEEEEECcc--ccCcCcCCCeEEEEEECH
Confidence 5678999999999987 88775 8988888653
No 56
>COG3627 PhnJ Uncharacterized enzyme of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=42.14 E-value=25 Score=34.75 Aligned_cols=25 Identities=28% Similarity=0.599 Sum_probs=21.6
Q ss_pred cEEEeccccceEEEeCCCCcCCCCC
Q 016941 93 SEFKLDRSGPFYFISGNHDHCQKGQ 117 (380)
Q Consensus 93 dvVtLdkpG~yYFICGV~gHCq~GM 117 (380)
|+|.+|.-|-+-|+|+..+||++-+
T Consensus 257 DEvi~DD~G~rmfvCSDTD~C~~r~ 281 (291)
T COG3627 257 DEVVLDDKGGRMFVCSDTDFCEQRR 281 (291)
T ss_pred eeeEEcCCCceEEEecCchHHHhHH
Confidence 5788888899999999999998643
No 57
>PRK11479 hypothetical protein; Provisional
Probab=39.75 E-value=27 Score=34.84 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=18.8
Q ss_pred CCccC-CCCCcccccCCC-----eEecCceeeee
Q 016941 33 GWVTN-PGENYNKWSGRN-----RFLVNDTLFFK 60 (380)
Q Consensus 33 GWt~~-P~~nYt~WAS~k-----TF~VGDTLVFk 60 (380)
-|.+. +...+.+|...+ ..+.||.|.|.
T Consensus 41 ~~~~~~pr~s~~q~~~g~~Vs~~~LqpGDLVFfs 74 (274)
T PRK11479 41 TWAVKFQHQSSFTEQGIKEITAPDLKPGDLLFSS 74 (274)
T ss_pred hcceecCcccHHHHhCCcccChhhCCCCCEEEEe
Confidence 35432 455677777664 56899999886
No 58
>PRK09838 periplasmic copper-binding protein; Provisional
Probab=39.41 E-value=88 Score=27.38 Aligned_cols=24 Identities=8% Similarity=0.171 Sum_probs=15.9
Q ss_pred cccccCCCeEecCceeeeeeecCC
Q 016941 42 YNKWSGRNRFLVNDTLFFKYKKGS 65 (380)
Q Consensus 42 Yt~WAS~kTF~VGDTLVFkY~aG~ 65 (380)
..+...-..+++||.|.|.|....
T Consensus 80 v~~~~~l~~lk~G~~V~F~~~~~~ 103 (115)
T PRK09838 80 ITPQTKMSEIKTGDKVAFNFVQQG 103 (115)
T ss_pred CCChhhhccCCCCCEEEEEEEEcC
Confidence 334444456888888888887543
No 59
>PF02157 Man-6-P_recep: Mannose-6-phosphate receptor; PDB: 2RLB_A 3K42_A 2RL9_A 3K43_A 1C39_A 1M6P_A 3CY4_A 1KEO_B 2RL7_D 2RL8_B ....
Probab=38.59 E-value=10 Score=37.93 Aligned_cols=40 Identities=28% Similarity=0.493 Sum_probs=0.0
Q ss_pred ccceEEEecCCCCCccCCCCCcccccCCCeEecCceeeeeeec
Q 016941 21 SHALKFNVGGKHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKK 63 (380)
Q Consensus 21 AsA~tyvVGGs~GWt~~P~~nYt~WAS~kTF~VGDTLVFkY~a 63 (380)
-..++..|-+.+||..-| ||.-|+.=-.|. -|-..|....
T Consensus 208 G~lYqR~v~garG~eqiP--N~~fW~~l~~l~-~Dg~~f~crs 247 (278)
T PF02157_consen 208 GILYQRFVMGARGWEQIP--NYSFWAGLPSLV-ADGCDFVCRS 247 (278)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHHhcCchhhhCc--CHHHHHhhHHHH-HHHHhheecc
Confidence 334566677789998654 799998755554 4777776543
No 60
>TIGR03511 GldH_lipo gliding motility-associated lipoprotein GldH. Members of this protein family are predicted lipoproteins, exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). Members include GldH, a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family may have gliding motility.
Probab=38.19 E-value=1.2e+02 Score=27.89 Aligned_cols=27 Identities=37% Similarity=0.443 Sum_probs=13.2
Q ss_pred ceeeeeeec----CCceE-EEe-cccCCCCCCC
Q 016941 55 DTLFFKYKK----GSDSV-LLV-NKDDYDSCNT 81 (380)
Q Consensus 55 DTLVFkY~a----G~HSV-veV-nK~dYdsCn~ 81 (380)
|+|.|++.. +.+++ +.| +..+|.-+|.
T Consensus 42 d~l~F~~~~~d~~~~y~l~l~lR~n~~Ypy~nl 74 (156)
T TIGR03511 42 DTLDFEIPITDYTASYRLFLLIRNDNRYPYRNL 74 (156)
T ss_pred CcEEEEEeecCCCCcEEEEEEEEcCCCCcccCe
Confidence 555666543 22333 233 4556665554
No 61
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=37.54 E-value=44 Score=29.26 Aligned_cols=32 Identities=16% Similarity=0.341 Sum_probs=24.4
Q ss_pred EEEecc-ccceEEEe----CCCCcCCCCCeEEEEecC
Q 016941 94 EFKLDR-SGPFYFIS----GNHDHCQKGQKLIVVVLH 125 (380)
Q Consensus 94 vVtLdk-pG~yYFIC----GV~gHCq~GMKLaInV~a 125 (380)
.|+.++ .|.||+.+ ....+.++|+.+.|.+-.
T Consensus 121 lv~~~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y~ 157 (159)
T PF00394_consen 121 LVTADQPPGNYWIRASYQHDSINDPQNGNALAILRYD 157 (159)
T ss_dssp EEEECSCSSEEEEEEEESSSSSHSHGGGTTEEEEEET
T ss_pred EEEeCCCCCeEEEEEecccCCCccCCCcEEEEEEEEC
Confidence 577887 79999999 444567789999987643
No 62
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=37.05 E-value=11 Score=35.09 Aligned_cols=19 Identities=42% Similarity=0.749 Sum_probs=0.0
Q ss_pred hhhHHHHHHhhhceeEEec
Q 016941 361 GLLGVSLVLGLVSGIIFVG 379 (380)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~ 379 (380)
.++||.|-+||+.|||||-
T Consensus 134 IIVGVLlaIG~igGIIivv 152 (162)
T PF05808_consen 134 IIVGVLLAIGFIGGIIIVV 152 (162)
T ss_dssp -------------------
T ss_pred ehhhHHHHHHHHhheeeEE
Confidence 3578889999999999874
No 63
>PLN03089 hypothetical protein; Provisional
Probab=36.76 E-value=2.5e+02 Score=29.39 Aligned_cols=32 Identities=22% Similarity=0.477 Sum_probs=22.0
Q ss_pred EEEeccccceEEEe-CCCCcCCCCCeEEEEecCC
Q 016941 94 EFKLDRSGPFYFIS-GNHDHCQKGQKLIVVVLHE 126 (380)
Q Consensus 94 vVtLdkpG~yYFIC-GV~gHCq~GMKLaInV~as 126 (380)
.|.+ ..|.+|-+. .....|.+-|+|.|.|...
T Consensus 98 ~i~t-~~G~~Y~LTFs~ar~c~~~~~v~vsv~~~ 130 (373)
T PLN03089 98 TLTV-TKGSYYSLTFSAARTCAQDESLNVSVPPE 130 (373)
T ss_pred EEEc-cCCCEEEEEEEecCCCCCCceEEEEecCC
Confidence 3443 358777655 5557999999888776654
No 64
>PRK11528 hypothetical protein; Provisional
Probab=36.53 E-value=79 Score=31.01 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=18.8
Q ss_pred CCCccCCCCCcccccCCCeEecC--------ceeeeeeec
Q 016941 32 HGWVTNPGENYNKWSGRNRFLVN--------DTLFFKYKK 63 (380)
Q Consensus 32 ~GWt~~P~~nYt~WAS~kTF~VG--------DTLVFkY~a 63 (380)
.+|... ..+|-+|.+....+-+ +.|+|.+-.
T Consensus 26 ~~w~di-s~~yl~W~~~~e~~~~~~~~~~d~~ylelE~g~ 64 (254)
T PRK11528 26 GGFANI-SLNYLDWTSRTTEKSSDKSHKDDFGYLELEGGA 64 (254)
T ss_pred ccccce-eehhhhhhccccccccccCCcCCCcEEEEEccc
Confidence 357532 4678899888665432 156666654
No 65
>PF12961 DUF3850: Domain of Unknown Function with PDB structure (DUF3850)
Probab=36.26 E-value=19 Score=29.55 Aligned_cols=13 Identities=31% Similarity=0.560 Sum_probs=11.1
Q ss_pred CCeEecCceeeee
Q 016941 48 RNRFLVNDTLFFK 60 (380)
Q Consensus 48 ~kTF~VGDTLVFk 60 (380)
++.|+|||.|+++
T Consensus 26 DRdf~VGD~L~L~ 38 (72)
T PF12961_consen 26 DRDFQVGDILVLR 38 (72)
T ss_pred CCCCCCCCEEEEE
Confidence 5689999999874
No 66
>PLN02792 oxidoreductase
Probab=35.06 E-value=98 Score=33.23 Aligned_cols=70 Identities=19% Similarity=0.351 Sum_probs=44.9
Q ss_pred CeEecCceeeeeeecCC--------ceEEEecc---cC--CCCCCCCCCccccCCCC---cEEEe-ccccceEEEeCCCC
Q 016941 49 NRFLVNDTLFFKYKKGS--------DSVLLVNK---DD--YDSCNTKKPLLKLDSGD---SEFKL-DRSGPFYFISGNHD 111 (380)
Q Consensus 49 kTF~VGDTLVFkY~aG~--------HSVveVnK---~d--YdsCn~snpI~~fSsGn---dvVtL-dkpG~yYFICGV~g 111 (380)
++++.||+|+.+..+.. |.+.+... |. +..|-+. .|. ..|++ ++.|+|||=|-...
T Consensus 49 I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~tqcPI~-------PG~sftY~F~~~~q~GT~WYHsH~~~ 121 (536)
T PLN02792 49 IRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYGTTCPIP-------PGKNYTYDFQVKDQVGSYFYFPSLAV 121 (536)
T ss_pred EEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCCCcCccC-------CCCcEEEEEEeCCCccceEEecCcch
Confidence 48899999999987742 44544321 11 2234221 222 36888 47999999998776
Q ss_pred cCCCCCeEEEEecC
Q 016941 112 HCQKGQKLIVVVLH 125 (380)
Q Consensus 112 HCq~GMKLaInV~a 125 (380)
+-..|+.-.|.|..
T Consensus 122 q~~~Gl~G~liI~~ 135 (536)
T PLN02792 122 QKAAGGYGSLRIYS 135 (536)
T ss_pred hhhcccccceEEeC
Confidence 66677776666554
No 67
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=34.95 E-value=1.5e+02 Score=30.09 Aligned_cols=30 Identities=17% Similarity=0.217 Sum_probs=24.8
Q ss_pred EEEeccccceEEEeCCCCcCCCC---CeEEEEecC
Q 016941 94 EFKLDRSGPFYFISGNHDHCQKG---QKLIVVVLH 125 (380)
Q Consensus 94 vVtLdkpG~yYFICGV~gHCq~G---MKLaInV~a 125 (380)
.++.+++|.|+-.|.. .|..| |++.|.|..
T Consensus 194 ~~~a~~~G~Y~G~CaE--yCG~gHs~M~f~v~v~~ 226 (315)
T PRK10525 194 HLIANEPGTYDGISAS--YSGPGFSGMKFKAIATP 226 (315)
T ss_pred EEEcCCCEEEEEEChh--hcCccccCCeEEEEEEC
Confidence 5678999999999987 88764 999988763
No 68
>PRK14125 cell division suppressor protein YneA; Provisional
Probab=34.50 E-value=23 Score=30.19 Aligned_cols=10 Identities=30% Similarity=0.295 Sum_probs=6.8
Q ss_pred CeEecCceee
Q 016941 49 NRFLVNDTLF 58 (380)
Q Consensus 49 kTF~VGDTLV 58 (380)
.+++-||+|+
T Consensus 39 ~tV~~GDTLW 48 (103)
T PRK14125 39 ITVQEGDTLW 48 (103)
T ss_pred EEECCCCCHH
Confidence 3677777773
No 69
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=33.80 E-value=49 Score=30.90 Aligned_cols=30 Identities=20% Similarity=0.284 Sum_probs=23.5
Q ss_pred EEEeccccceEEEeCCCCcCCCC---CeEEEEecC
Q 016941 94 EFKLDRSGPFYFISGNHDHCQKG---QKLIVVVLH 125 (380)
Q Consensus 94 vVtLdkpG~yYFICGV~gHCq~G---MKLaInV~a 125 (380)
.+..+++|.||..|.. .|..| |.+.|.|..
T Consensus 116 ~~~~~~~G~y~gqCsE--lCG~gHs~M~~~V~vvs 148 (162)
T PTZ00047 116 NTFILREGVFYGQCSE--MCGTLHGFMPIVVEAVS 148 (162)
T ss_pred EEecCCCeEEEEEcch--hcCcCccCceEEEEEeC
Confidence 4567889999999986 77654 888888764
No 70
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=33.45 E-value=50 Score=31.53 Aligned_cols=30 Identities=17% Similarity=0.456 Sum_probs=24.6
Q ss_pred EEEeccccceEEEeCCCCcCCCC---CeEEEEecC
Q 016941 94 EFKLDRSGPFYFISGNHDHCQKG---QKLIVVVLH 125 (380)
Q Consensus 94 vVtLdkpG~yYFICGV~gHCq~G---MKLaInV~a 125 (380)
.++.+++|.||..|.. -|..| |++.|.|..
T Consensus 183 ~~~~~~~G~y~g~Cse--~CG~~H~~M~~~v~vv~ 215 (227)
T MTH00154 183 NFLINRPGLFFGQCSE--ICGANHSFMPIVIESVS 215 (227)
T ss_pred EEEEcCceEEEEEeec--hhCcCccCCeEEEEEeC
Confidence 5678999999999986 78765 888888764
No 71
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=32.70 E-value=39 Score=27.41 Aligned_cols=33 Identities=15% Similarity=0.154 Sum_probs=17.8
Q ss_pred CcchhHHHHHHHHHHHHhhcccceEEEecCCCCC
Q 016941 1 MEFQKSLCLSLALFAFFISSSHALKFNVGGKHGW 34 (380)
Q Consensus 1 Ma~~k~l~llLaLLAaL~s~AsA~tyvVGGs~GW 34 (380)
||.|.+++.+| ++++..-.-.|-+|.-|+.-.+
T Consensus 1 MA~Kl~vialL-C~aLva~vQ~APQYa~GeeP~Y 33 (65)
T PF10731_consen 1 MASKLIVIALL-CVALVAIVQSAPQYAPGEEPSY 33 (65)
T ss_pred CcchhhHHHHH-HHHHHHHHhcCcccCCCCCCCc
Confidence 88865554333 3433333334557878875444
No 72
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=32.52 E-value=69 Score=35.14 Aligned_cols=66 Identities=23% Similarity=0.352 Sum_probs=43.7
Q ss_pred cccccCCCeEecCceeeeeeecCCceEEEecccCCCCCCCCC----Ccccc-CCCCc-EEEeccccceEEEe
Q 016941 42 YNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNTKK----PLLKL-DSGDS-EFKLDRSGPFYFIS 107 (380)
Q Consensus 42 Yt~WAS~kTF~VGDTLVFkY~aG~HSVveVnK~dYdsCn~sn----pI~~f-SsGnd-vVtLdkpG~yYFIC 107 (380)
.++=.++++|.--|.+.|+|+.....|+.+...|.|.-|-+- .+..+ .+|++ +|.|.+.|+-|=+|
T Consensus 206 ~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~ 277 (566)
T KOG2315|consen 206 QHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVT 277 (566)
T ss_pred ccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEE
Confidence 344456789999999999999988888887777777644331 11111 23554 67777777665444
No 73
>PLN02792 oxidoreductase
Probab=32.40 E-value=2.1e+02 Score=30.83 Aligned_cols=80 Identities=18% Similarity=0.111 Sum_probs=51.6
Q ss_pred eEecCceeeeeeecC---C-------ceEEEe--cccCCCC-----CCCCCCcc-----ccCCCCc--EEEeccccceEE
Q 016941 50 RFLVNDTLFFKYKKG---S-------DSVLLV--NKDDYDS-----CNTKKPLL-----KLDSGDS--EFKLDRSGPFYF 105 (380)
Q Consensus 50 TF~VGDTLVFkY~aG---~-------HSVveV--nK~dYds-----Cn~snpI~-----~fSsGnd--vVtLdkpG~yYF 105 (380)
.+.-||+++.-+.+. . |+...| ....|+. -|..++.. .+..|-. +|..|.+|..+|
T Consensus 406 ~~~~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDNPGvW~~ 485 (536)
T PLN02792 406 GAHHNAFLEIIFQNREKIVQSYHLDGYNFWVVGINKGIWSRASRREYNLKDAISRSTTQVYPESWTAVYVALDNVGMWNL 485 (536)
T ss_pred EcCCCCEEEEEEECCCCCCCCeeeCCCceEEEeecCCCCCcccccccCcCCCCccceEEECCCCEEEEEEEeeCCEEEee
Confidence 456677776666542 2 354444 3345542 23344432 2234433 678999999999
Q ss_pred EeCCCCcCCCCCeEEEEecCCCCC
Q 016941 106 ISGNHDHCQKGQKLIVVVLHERPP 129 (380)
Q Consensus 106 ICGV~gHCq~GMKLaInV~asss~ 129 (380)
=|-..-|=..||.+.+.|......
T Consensus 486 HCh~~~h~~~Gm~~~~~v~~~~~~ 509 (536)
T PLN02792 486 RSQFWARQYLGQQFYLRVYSPTHS 509 (536)
T ss_pred eEcchhccccceEEEEEEccCCCc
Confidence 998888999999999998865544
No 74
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=32.17 E-value=1.1e+02 Score=32.40 Aligned_cols=78 Identities=14% Similarity=0.096 Sum_probs=0.0
Q ss_pred CeEecCceeeeeeecCC--------ceEEEecccCCCC--CCCCCCccccCCCCcEEEe-ccccceEEEeCCCCcCCCCC
Q 016941 49 NRFLVNDTLFFKYKKGS--------DSVLLVNKDDYDS--CNTKKPLLKLDSGDSEFKL-DRSGPFYFISGNHDHCQKGQ 117 (380)
Q Consensus 49 kTF~VGDTLVFkY~aG~--------HSVveVnK~dYds--Cn~snpI~~fSsGndvVtL-dkpG~yYFICGV~gHCq~GM 117 (380)
++++.||+|+.+..+.. |.+.+.....+|. ...--+|.--.+-..+|++ +..|+|||=|-. .+...||
T Consensus 36 i~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~pI~PG~s~~Y~f~~~~~~GT~WYHsH~-~~~~~Gl 114 (539)
T TIGR03389 36 LYAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQCPIQPGQSYVYNFTITGQRGTLWWHAHI-SWLRATV 114 (539)
T ss_pred EEEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccCCcCCCCeEEEEEEecCCCeeEEEecCc-hhhhccc
Q ss_pred eEEEEecCCC
Q 016941 118 KLIVVVLHER 127 (380)
Q Consensus 118 KLaInV~ass 127 (380)
.-.|.|....
T Consensus 115 ~G~lIV~~~~ 124 (539)
T TIGR03389 115 YGAIVILPKP 124 (539)
T ss_pred eEEEEEcCCC
No 75
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=31.91 E-value=53 Score=31.22 Aligned_cols=31 Identities=23% Similarity=0.379 Sum_probs=25.1
Q ss_pred EEEeccccceEEEeCCCCcCCCC---CeEEEEecCC
Q 016941 94 EFKLDRSGPFYFISGNHDHCQKG---QKLIVVVLHE 126 (380)
Q Consensus 94 vVtLdkpG~yYFICGV~gHCq~G---MKLaInV~as 126 (380)
.+..+++|.||..|.. -|..| |.+.|.|...
T Consensus 183 ~~~~~~~G~~~g~CsE--~CG~~Hs~M~~~v~vv~~ 216 (225)
T MTH00168 183 AFLSSRPGSFYGQCSE--ICGANHSFMPIVVEFVPW 216 (225)
T ss_pred EEEcCCCEEEEEEccc--ccCcCcCCCeEEEEEeCH
Confidence 5678999999999986 78765 8888887653
No 76
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=31.72 E-value=52 Score=31.21 Aligned_cols=31 Identities=23% Similarity=0.465 Sum_probs=25.2
Q ss_pred EEEeccccceEEEeCCCCcCCCC---CeEEEEecCC
Q 016941 94 EFKLDRSGPFYFISGNHDHCQKG---QKLIVVVLHE 126 (380)
Q Consensus 94 vVtLdkpG~yYFICGV~gHCq~G---MKLaInV~as 126 (380)
.++.+++|.||..|+. -|..| |.+.|+|...
T Consensus 183 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vv~~ 216 (226)
T MTH00139 183 GFFINRPGVFYGQCSE--ICGANHSFMPIVVEAISP 216 (226)
T ss_pred EEEcCCCEEEEEEChh--hcCcCcCCCeEEEEEeCH
Confidence 5678999999999987 88765 8888887653
No 77
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=31.52 E-value=34 Score=39.35 Aligned_cols=46 Identities=24% Similarity=0.431 Sum_probs=23.9
Q ss_pred CcchhHHH--HHH-HHHHHHhhcccceEE------EecCCCCCccCCCCCcccccCCC
Q 016941 1 MEFQKSLC--LSL-ALFAFFISSSHALKF------NVGGKHGWVTNPGENYNKWSGRN 49 (380)
Q Consensus 1 Ma~~k~l~--llL-aLLAaL~s~AsA~ty------vVGGs~GWt~~P~~nYt~WAS~k 49 (380)
|++.+... +++ +++++++..+.|.+. .++++.||...| |..|.+-.
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~a~Ev~LlDt~~~~~eLgW~~~P---~~gWee~s 55 (996)
T KOG0196|consen 1 MALRRLRILLLLLCLAALLLLSLAAAKEVVLLDTSTATGELGWLTYP---PGGWEEVS 55 (996)
T ss_pred CcccccccchhhHHHHHhhhhhccccceeEeeecccccceeeeeecC---CCCchhhh
Confidence 66655532 211 223344445555543 467789998654 34476544
No 78
>KOG3342 consensus Signal peptidase I [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.49 E-value=17 Score=34.22 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=16.1
Q ss_pred eEecCceeeeeeecCC----ceEEEe
Q 016941 50 RFLVNDTLFFKYKKGS----DSVLLV 71 (380)
Q Consensus 50 TF~VGDTLVFkY~aG~----HSVveV 71 (380)
-+++||.++|+.+... |-|+.+
T Consensus 77 p~~vGdivVf~vegR~IPiVHRviK~ 102 (180)
T KOG3342|consen 77 PIRVGDIVVFKVEGREIPIVHRVIKQ 102 (180)
T ss_pred cceeccEEEEEECCccCchhHHHHHH
Confidence 3899999999998432 555543
No 79
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=31.01 E-value=60 Score=30.95 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=24.6
Q ss_pred EEEeccccceEEEeCCCCcCCCC---CeEEEEecC
Q 016941 94 EFKLDRSGPFYFISGNHDHCQKG---QKLIVVVLH 125 (380)
Q Consensus 94 vVtLdkpG~yYFICGV~gHCq~G---MKLaInV~a 125 (380)
.++.+++|.||..|.. -|..| |.+.|.|..
T Consensus 183 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vv~ 215 (227)
T MTH00117 183 SFITTRPGVFYGQCSE--ICGANHSFMPIVVESVP 215 (227)
T ss_pred EEEEcccceEEEEecc--ccccCccCCeEEEEEcC
Confidence 5678999999999987 78665 888888765
No 80
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=30.78 E-value=52 Score=31.49 Aligned_cols=30 Identities=23% Similarity=0.424 Sum_probs=24.2
Q ss_pred EEEeccccceEEEeCCCCcCCCC---CeEEEEecC
Q 016941 94 EFKLDRSGPFYFISGNHDHCQKG---QKLIVVVLH 125 (380)
Q Consensus 94 vVtLdkpG~yYFICGV~gHCq~G---MKLaInV~a 125 (380)
.+..+++|.||..|.. -|..| |++.|.|..
T Consensus 183 ~~~~~~~G~~~g~C~e--~CG~~H~~M~~~v~vv~ 215 (230)
T MTH00129 183 AFIASRPGVFYGQCSE--ICGANHSFMPIVVEAVP 215 (230)
T ss_pred EEEeCCceEEEEEChh--hccccccCCcEEEEEEC
Confidence 4678999999999987 77654 888888764
No 81
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=30.04 E-value=58 Score=31.15 Aligned_cols=30 Identities=13% Similarity=0.340 Sum_probs=24.2
Q ss_pred EEEeccccceEEEeCCCCcCCCC---CeEEEEecC
Q 016941 94 EFKLDRSGPFYFISGNHDHCQKG---QKLIVVVLH 125 (380)
Q Consensus 94 vVtLdkpG~yYFICGV~gHCq~G---MKLaInV~a 125 (380)
.++.+++|.||..|.. -|..| |.+.|.|..
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~H~~M~~~v~v~~ 215 (227)
T MTH00098 183 TLMSTRPGLYYGQCSE--ICGSNHSFMPIVLELVP 215 (227)
T ss_pred EEecCCcEEEEEECcc--ccCcCcCCceEEEEEeC
Confidence 5678999999999987 77665 888888764
No 82
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=29.95 E-value=56 Score=30.69 Aligned_cols=31 Identities=23% Similarity=0.268 Sum_probs=26.0
Q ss_pred EEEeccccceEEEeCCCCcCCCC---CeEEEEecCC
Q 016941 94 EFKLDRSGPFYFISGNHDHCQKG---QKLIVVVLHE 126 (380)
Q Consensus 94 vVtLdkpG~yYFICGV~gHCq~G---MKLaInV~as 126 (380)
.|+.+++|.||-.|.. .|..| |++.|.|...
T Consensus 173 ~~~~~~~G~y~g~Cae--~CG~~Hs~M~~~v~v~~~ 206 (217)
T TIGR01432 173 YLQADQVGTYRGRNAN--FNGEGFADQTFDVNAVSE 206 (217)
T ss_pred EEEeCCCEEEEEEehh--hcCccccCCeEEEEEeCH
Confidence 5788999999999986 78765 9999988753
No 83
>PRK12407 flgH flagellar basal body L-ring protein; Reviewed
Probab=29.32 E-value=77 Score=30.62 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=13.9
Q ss_pred cccCCCeEecCceeeeeee
Q 016941 44 KWSGRNRFLVNDTLFFKYK 62 (380)
Q Consensus 44 ~WAS~kTF~VGDTLVFkY~ 62 (380)
-...++-.+|||+|...-.
T Consensus 58 Lf~D~rA~~VGDiiTV~i~ 76 (221)
T PRK12407 58 LLQDRRAYRVGDILTVILD 76 (221)
T ss_pred ccccccccCCCCEEEEEEE
Confidence 3445667899999977664
No 84
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=29.11 E-value=66 Score=30.75 Aligned_cols=30 Identities=20% Similarity=0.445 Sum_probs=24.7
Q ss_pred EEEeccccceEEEeCCCCcCCCC---CeEEEEecC
Q 016941 94 EFKLDRSGPFYFISGNHDHCQKG---QKLIVVVLH 125 (380)
Q Consensus 94 vVtLdkpG~yYFICGV~gHCq~G---MKLaInV~a 125 (380)
.++.+++|.||..|.. -|..| |++.|.|..
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~Hs~M~~~v~vv~ 215 (229)
T MTH00038 183 TFFISRTGLFYGQCSE--ICGANHSFMPIVIESVP 215 (229)
T ss_pred EEEcCCCEEEEEEccc--ccCcCcCCCeEEEEEeC
Confidence 5678999999999986 78765 888888764
No 85
>PRK13861 type IV secretion system protein VirB9; Provisional
Probab=27.68 E-value=1.6e+02 Score=29.32 Aligned_cols=21 Identities=10% Similarity=0.156 Sum_probs=9.2
Q ss_pred EecCceeeeeeecCCceEEEe
Q 016941 51 FLVNDTLFFKYKKGSDSVLLV 71 (380)
Q Consensus 51 F~VGDTLVFkY~aG~HSVveV 71 (380)
+..+|+....-..|.++.++.
T Consensus 39 Y~p~~V~~V~~~~G~~T~I~f 59 (292)
T PRK13861 39 YNPDQVVRLSTAVGATLVVTF 59 (292)
T ss_pred eCCCCEEEEEEECCcEEEEEE
Confidence 334444444444444444443
No 86
>PRK10808 outer membrane protein A; Reviewed
Probab=27.32 E-value=1.7e+02 Score=28.96 Aligned_cols=12 Identities=42% Similarity=1.016 Sum_probs=10.0
Q ss_pred EEEecCCCCCcc
Q 016941 25 KFNVGGKHGWVT 36 (380)
Q Consensus 25 tyvVGGs~GWt~ 36 (380)
.|.||+..||..
T Consensus 27 g~YvG~~~G~~~ 38 (351)
T PRK10808 27 TWYTGGKLGWSQ 38 (351)
T ss_pred cEEEecccccee
Confidence 489999999864
No 87
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=26.44 E-value=4.9e+02 Score=30.57 Aligned_cols=9 Identities=67% Similarity=1.645 Sum_probs=4.0
Q ss_pred CCCCCCCCC
Q 016941 333 GGTPPPSPS 341 (380)
Q Consensus 333 ~~~~~~~~~ 341 (380)
||.|||.+-
T Consensus 593 Gg~ppPP~~ 601 (1102)
T KOG1924|consen 593 GGPPPPPPP 601 (1102)
T ss_pred CCCCCCCCC
Confidence 444444443
No 88
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=26.33 E-value=74 Score=30.68 Aligned_cols=31 Identities=19% Similarity=0.409 Sum_probs=25.3
Q ss_pred EEEeccccceEEEeCCCCcCCCC---CeEEEEecCC
Q 016941 94 EFKLDRSGPFYFISGNHDHCQKG---QKLIVVVLHE 126 (380)
Q Consensus 94 vVtLdkpG~yYFICGV~gHCq~G---MKLaInV~as 126 (380)
.++.+++|.||..|.. .|..| |++.|+|...
T Consensus 194 ~~~~~~~G~y~g~C~e--~CG~~Hs~M~~~v~vv~~ 227 (240)
T MTH00023 194 GFFIKRPGVFYGQCSE--ICGANHSFMPIVIEAVSL 227 (240)
T ss_pred EEEcCCCEEEEEEchh--hcCcCccCCeEEEEEECH
Confidence 5678999999999987 88775 8888887653
No 89
>PF09792 But2: Ubiquitin 3 binding protein But2 C-terminal domain; InterPro: IPR018620 This entry represents a presumed C-terminal domain of ubiquitin 3 binding proteins (But2). But2 is conserved in yeasts. It binds to Uba3 and is involved in the NEDD8 signalling pathway [].
Probab=25.97 E-value=1.7e+02 Score=26.23 Aligned_cols=32 Identities=22% Similarity=0.333 Sum_probs=26.6
Q ss_pred EEEeccccceEEEeCCCCcCCCCCeEEEEecCCCC
Q 016941 94 EFKLDRSGPFYFISGNHDHCQKGQKLIVVVLHERP 128 (380)
Q Consensus 94 vVtLdkpG~yYFICGV~gHCq~GMKLaInV~asss 128 (380)
.+++.. |.-|.|.. ..|..||++...+.....
T Consensus 100 ~~~~~p-G~~y~i~~--f~Cp~g~~v~ye~~~~g~ 131 (143)
T PF09792_consen 100 TFTVSP-GNSYVINT--FPCPAGQAVSYEMSSAGD 131 (143)
T ss_pred ceEECC-CCceEeCc--EeCCCCCEEEEEEEecCC
Confidence 577875 99999986 599999999998887654
No 90
>PF10377 ATG11: Autophagy-related protein 11; InterPro: IPR019460 This family consists of proteins involved in telomere maintenance. In Schizosaccharomyces pombe (fission yeast) this protein is called Taf1 (taz1 interacting factor) and is part of the telomere cap complex. In Saccharomyces cerevisiae (baker's yeast) this protein is called ATG11 and is known to be involved in vacuolar targeting and peroxisome degradation [, ].
Probab=25.42 E-value=40 Score=29.72 Aligned_cols=19 Identities=21% Similarity=0.438 Sum_probs=16.3
Q ss_pred CeEecCceeeeeeecCCce
Q 016941 49 NRFLVNDTLFFKYKKGSDS 67 (380)
Q Consensus 49 kTF~VGDTLVFkY~aG~HS 67 (380)
++|++||.+.|-++...|+
T Consensus 41 ~~f~~GDlvLflpt~~~~~ 59 (129)
T PF10377_consen 41 RNFQVGDLVLFLPTRNHNN 59 (129)
T ss_pred ecCCCCCEEEEEecCCCCc
Confidence 3799999999999987664
No 91
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=24.83 E-value=81 Score=30.18 Aligned_cols=30 Identities=20% Similarity=0.478 Sum_probs=24.3
Q ss_pred EEEeccccceEEEeCCCCcCCCC---CeEEEEecC
Q 016941 94 EFKLDRSGPFYFISGNHDHCQKG---QKLIVVVLH 125 (380)
Q Consensus 94 vVtLdkpG~yYFICGV~gHCq~G---MKLaInV~a 125 (380)
.++.+++|.||..|.. .|..| |.+.|.|..
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~Hs~M~~~v~vv~ 215 (228)
T MTH00008 183 GFTITRPGVFYGQCSE--ICGANHSFMPIVLEAVD 215 (228)
T ss_pred EEEeCCCEEEEEEChh--hcCcCccCceeEEEEEC
Confidence 5678999999999987 77654 888888765
No 92
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=23.53 E-value=86 Score=30.01 Aligned_cols=30 Identities=20% Similarity=0.371 Sum_probs=24.3
Q ss_pred EEEeccccceEEEeCCCCcCCCC---CeEEEEecC
Q 016941 94 EFKLDRSGPFYFISGNHDHCQKG---QKLIVVVLH 125 (380)
Q Consensus 94 vVtLdkpG~yYFICGV~gHCq~G---MKLaInV~a 125 (380)
.+..+++|.||..|.. -|..| |.+.|.|..
T Consensus 183 ~~~~~~~G~~~g~C~e--~CG~~Hs~M~~~v~vv~ 215 (228)
T MTH00076 183 SFIASRPGVYYGQCSE--ICGANHSFMPIVVEATP 215 (228)
T ss_pred EEEeCCcEEEEEEChh--hcCccccCCceEEEEeC
Confidence 4678999999999987 77654 888888765
No 93
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=23.13 E-value=84 Score=30.19 Aligned_cols=31 Identities=19% Similarity=0.383 Sum_probs=24.9
Q ss_pred EEEeccccceEEEeCCCCcCCCC---CeEEEEecCC
Q 016941 94 EFKLDRSGPFYFISGNHDHCQKG---QKLIVVVLHE 126 (380)
Q Consensus 94 vVtLdkpG~yYFICGV~gHCq~G---MKLaInV~as 126 (380)
.++.+++|.||..|.. -|..| |.+.|.|...
T Consensus 187 ~~~~~~~G~y~g~Cse--~CG~~Hs~M~i~v~vv~~ 220 (234)
T MTH00051 187 SFFIKRPGVFYGQCSE--ICGANHSFMPIVIEGVSL 220 (234)
T ss_pred EEEeCCCEEEEEEChh--hcCcccccCeeEEEEECH
Confidence 4678999999999987 78665 8888887653
No 94
>PF12988 DUF3872: Domain of unknown function, B. Theta Gene description (DUF3872); InterPro: IPR024355 This entry represents proteins of unknown function found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene coding for this protein is located in a conjugate transposon and appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].; PDB: 2L3B_A 2L7Q_A.
Probab=23.13 E-value=1.8e+02 Score=26.74 Aligned_cols=75 Identities=13% Similarity=0.231 Sum_probs=35.5
Q ss_pred cccccCCCeEecCceeeeeeecCCceEEEecccCCCCCCC-------C-CCccccCCC-----CcEEEeccccceEEEeC
Q 016941 42 YNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNKDDYDSCNT-------K-KPLLKLDSG-----DSEFKLDRSGPFYFISG 108 (380)
Q Consensus 42 Yt~WAS~kTF~VGDTLVFkY~aG~HSVveVnK~dYdsCn~-------s-npI~~fSsG-----ndvVtLdkpG~yYFICG 108 (380)
...|--.|++..|++++.++.- . .+.+|+.-.. . ....++++| ||...|.+...+.|+-+
T Consensus 35 v~tmPVpk~I~~GeTvEIR~~l-----~--reG~y~~t~Y~iRYFQ~dGkG~L~~~~g~~~~pND~Y~L~~~~FRLYYTS 107 (137)
T PF12988_consen 35 VETMPVPKKIKKGETVEIRCEL-----K--REGNYADTRYTIRYFQPDGKGTLRMDDGTVLLPNDRYPLEKEVFRLYYTS 107 (137)
T ss_dssp EEE----SS--TTEEEEEEEEE-----E--ESS--SS---EEEEE-SSS-EEEEETTS-EE-TTSEEE-S-SEEEEEEEE
T ss_pred EEEeccccccCCCCEEEEEEEE-----e--cCceecccEEEEEEEeecCCEEEEecCCcEeccccceecCcCEEEEEEec
Confidence 4556668899999999888753 1 1233332111 1 112234555 46778887665555543
Q ss_pred CCCcCCCCCeEEEEecCC
Q 016941 109 NHDHCQKGQKLIVVVLHE 126 (380)
Q Consensus 109 V~gHCq~GMKLaInV~as 126 (380)
+|..-|.+.|-|...
T Consensus 108 ---~s~~~q~idv~veDn 122 (137)
T PF12988_consen 108 ---RSDDQQTIDVYVEDN 122 (137)
T ss_dssp ----SSS-EEEEEEEEET
T ss_pred ---CCCCCceeEEEEEeC
Confidence 688888888877643
No 95
>PF06007 PhnJ: Phosphonate metabolism protein PhnJ; InterPro: IPR010306 This family consists of several bacterial phosphonate metabolism (PhnJ) sequences. The exact role that PhnJ plays in phosphonate utilisation is unknown.; GO: 0042916 alkylphosphonate transport
Probab=22.86 E-value=44 Score=33.55 Aligned_cols=23 Identities=30% Similarity=0.522 Sum_probs=20.2
Q ss_pred cEEEeccccceEEEeCCCCcCCC
Q 016941 93 SEFKLDRSGPFYFISGNHDHCQK 115 (380)
Q Consensus 93 dvVtLdkpG~yYFICGV~gHCq~ 115 (380)
+++.+++.|.+.|+|+..++|.+
T Consensus 249 dEvi~dd~G~~~~~CSDtdyC~~ 271 (277)
T PF06007_consen 249 DEVIDDDDGGRMFVCSDTDYCEK 271 (277)
T ss_pred eeeEEcCCCCEEEEECCHHHHHH
Confidence 46778889999999999999975
No 96
>PF11604 CusF_Ec: Copper binding periplasmic protein CusF; InterPro: IPR021647 CusF is a periplasmic protein involved in copper and silver resistance in Escherichia coil. CusF forms a five-stranded beta-barrel OB fold. Cu(I) binds to H36, M47 and M49 which are conserved residues in the protein []. ; PDB: 2L55_A 2VB3_X 1ZEQ_X 2QCP_X 3E6Z_X 2VB2_X.
Probab=22.72 E-value=59 Score=25.61 Aligned_cols=26 Identities=12% Similarity=0.158 Sum_probs=16.6
Q ss_pred cccccCCCeEecCceeeeeeecCCce
Q 016941 42 YNKWSGRNRFLVNDTLFFKYKKGSDS 67 (380)
Q Consensus 42 Yt~WAS~kTF~VGDTLVFkY~aG~HS 67 (380)
+.+.+.-..|++||.|.|.+......
T Consensus 34 v~~~~~l~~l~~Gd~V~F~~~~~~~~ 59 (70)
T PF11604_consen 34 VADPVDLAGLKPGDKVRFTFERTDDG 59 (70)
T ss_dssp --TTSEESS-STT-EEEEEEEEETTC
T ss_pred cCChhhhhcCCCCCEEEEEEEECCCC
Confidence 34445556899999999999875544
No 97
>PF04014 Antitoxin-MazE: Antidote-toxin recognition MazE; InterPro: IPR007159 This domain is found in AbrB from Bacillus subtilis. The product of the abrB gene is an ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation []. AbrB is thought to interact directly with the transcription initiation regions of genes under its control []. AbrB contains a helix-turn-helix structure, but this domain ends before the helix-turn-helix begins []. The product of the B. subtilis gene spoVT is another member of this family and is also a transcriptional regulator []. DNA-binding activity in this AbrB homologue requires hexamerisation []. Another family member has been isolated from the Sulfolobus solfataricus and has been identified as a homologue of bacterial repressor-like proteins. The Escherichia coli family member SohA or Prl1F appears to be bifunctional and is able to regulate its own expression as well as relieve the export block imposed by high-level synthesis of beta-galactosidase hybrid proteins [].; PDB: 2L66_A 2GLW_A 3TND_D 2W1T_B 2RO5_B 2FY9_A 2RO3_B 1UB4_C 3ZVK_G 1YFB_B ....
Probab=22.66 E-value=37 Score=24.48 Aligned_cols=34 Identities=9% Similarity=0.055 Sum_probs=23.3
Q ss_pred EecCCCCCccCCCCCcccccCCCeEecCceeeeeeecCC
Q 016941 27 NVGGKHGWVTNPGENYNKWSGRNRFLVNDTLFFKYKKGS 65 (380)
Q Consensus 27 vVGGs~GWt~~P~~nYt~WAS~kTF~VGDTLVFkY~aG~ 65 (380)
.||...+-+++ .+|.....++.||.|.|.++.+.
T Consensus 2 kvg~s~~v~iP-----k~~~~~l~l~~Gd~v~i~~~~~g 35 (47)
T PF04014_consen 2 KVGNSGQVTIP-----KEIREKLGLKPGDEVEIEVEGDG 35 (47)
T ss_dssp EETTCSEEEE------HHHHHHTTSSTTTEEEEEEETTS
T ss_pred EECCCceEECC-----HHHHHHcCCCCCCEEEEEEeCCC
Confidence 45555444443 45777778899999999998643
No 98
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=22.56 E-value=78 Score=25.42 Aligned_cols=40 Identities=25% Similarity=0.443 Sum_probs=30.0
Q ss_pred eEEEecCC---CCCccCC-------C--CCcccccCCCeEecCceeeeeeec
Q 016941 24 LKFNVGGK---HGWVTNP-------G--ENYNKWSGRNRFLVNDTLFFKYKK 63 (380)
Q Consensus 24 ~tyvVGGs---~GWt~~P-------~--~nYt~WAS~kTF~VGDTLVFkY~a 63 (380)
.-|+||+- ..|+..- . .+|..|.....+..|..+.|||-.
T Consensus 17 ~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~i 68 (96)
T PF00686_consen 17 SVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGTPFEYKYVI 68 (96)
T ss_dssp EEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred EEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCCEEEEEEEE
Confidence 35788974 3597521 1 268999999999999999999954
No 99
>PHA02954 EEV membrane glycoprotein; Provisional
Probab=22.30 E-value=3.2e+02 Score=27.81 Aligned_cols=18 Identities=17% Similarity=0.222 Sum_probs=15.6
Q ss_pred CeEecCceeeeeeecCCc
Q 016941 49 NRFLVNDTLFFKYKKGSD 66 (380)
Q Consensus 49 kTF~VGDTLVFkY~aG~H 66 (380)
..|..||+|.|+-+.|..
T Consensus 36 ~~Y~~gd~V~y~C~~GY~ 53 (317)
T PHA02954 36 TSFNDKQKVTFTCDSGYY 53 (317)
T ss_pred ccccCCCEEEEEcCCCcc
Confidence 568999999999998874
No 100
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=22.20 E-value=62 Score=26.67 Aligned_cols=39 Identities=23% Similarity=0.450 Sum_probs=28.4
Q ss_pred EEEecCC---CCCccCC-----CCCcccccCCCeEecCceeeeeeec
Q 016941 25 KFNVGGK---HGWVTNP-----GENYNKWSGRNRFLVNDTLFFKYKK 63 (380)
Q Consensus 25 tyvVGGs---~GWt~~P-----~~nYt~WAS~kTF~VGDTLVFkY~a 63 (380)
-|++|+. ..|+... ..+|..|.....+..|+.|+|||-.
T Consensus 18 l~v~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~lp~~~~veyKyv~ 64 (97)
T cd05810 18 VYVVGNVPQLGNWSPADAVKLDPTAYPTWSGSISLPASTNVEWKCLK 64 (97)
T ss_pred EEEEEChHHhCCCChhhcccccCCCCCeEEEEEEcCCCCeEEEEEEE
Confidence 4778864 4597421 2467889988889999999999953
No 101
>KOG3006 consensus Transthyretin and related proteins [Lipid transport and metabolism]
Probab=22.14 E-value=3.2e+02 Score=25.03 Aligned_cols=12 Identities=33% Similarity=0.420 Sum_probs=8.9
Q ss_pred CcchhHHHHHHH
Q 016941 1 MEFQKSLCLSLA 12 (380)
Q Consensus 1 Ma~~k~l~llLa 12 (380)
|+.+|++.|+++
T Consensus 1 m~~~r~l~l~ma 12 (132)
T KOG3006|consen 1 MASHRLLLLCMA 12 (132)
T ss_pred CchhhHHHHHHh
Confidence 888888866644
No 102
>smart00495 ChtBD3 Chitin-binding domain type 3.
Probab=22.04 E-value=56 Score=22.74 Aligned_cols=18 Identities=11% Similarity=0.409 Sum_probs=14.1
Q ss_pred cccccCCCeEecCceeee
Q 016941 42 YNKWSGRNRFLVNDTLFF 59 (380)
Q Consensus 42 Yt~WAS~kTF~VGDTLVF 59 (380)
|..|...+....||.+.|
T Consensus 1 ~~~W~~~~~Y~~Gd~V~~ 18 (41)
T smart00495 1 APAWQAGTVYTAGDVVSY 18 (41)
T ss_pred CCccCCCCcCcCCCEEEE
Confidence 457888888888998866
No 103
>PRK04517 hypothetical protein; Provisional
Probab=22.01 E-value=3.1e+02 Score=26.00 Aligned_cols=29 Identities=34% Similarity=0.355 Sum_probs=12.1
Q ss_pred CcchhHHHHHHHHHHHHhhcccc-eEEEecCC
Q 016941 1 MEFQKSLCLSLALFAFFISSSHA-LKFNVGGK 31 (380)
Q Consensus 1 Ma~~k~l~llLaLLAaL~s~AsA-~tyvVGGs 31 (380)
|...+.++++++++ +...+.| .+..+.++
T Consensus 1 MK~~~~~~~~~~l~--~s~~a~A~vtL~~p~~ 30 (216)
T PRK04517 1 MKPIKPLTCLLALC--FSGSASADVTMEVPDD 30 (216)
T ss_pred CCchHHHHHHHHHH--hhhhhhheEEEeCCCc
Confidence 66544443333322 2224444 45555443
No 104
>PF06462 Hyd_WA: Propeller; InterPro: IPR006624 Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) which encode 217 and 353 amino acids, respectively. Tectonin I is homologous to the C-terminal two-thirds of tectonin II. Both proteins contain six tandem repeats that are each 33-37 amino acids in length and define a new consensus sequence. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis [].
Probab=21.32 E-value=1.5e+02 Score=20.38 Aligned_cols=26 Identities=19% Similarity=0.427 Sum_probs=22.8
Q ss_pred cEEEeccccceEEEeCCCCcCCCCCe
Q 016941 93 SEFKLDRSGPFYFISGNHDHCQKGQK 118 (380)
Q Consensus 93 dvVtLdkpG~yYFICGV~gHCq~GMK 118 (380)
.++.+++-|..||=+|+...|..|+.
T Consensus 2 ~VWav~~~G~v~~R~Gis~~~P~G~~ 27 (32)
T PF06462_consen 2 QVWAVTSDGSVYFRTGISPSNPEGTS 27 (32)
T ss_pred eEEEEcCCCCEEEECcCCCCCCCCCC
Confidence 46788888999999999999999974
No 105
>PF06586 TraK: TraK protein; InterPro: IPR010563 This family consists of several TraK proteins from Escherichia coli, Salmonella typhi and Salmonella typhimurium. TraK is known to be essential for pilus assembly but its exact role in this process is unknown [].
Probab=21.07 E-value=6.8e+02 Score=23.28 Aligned_cols=21 Identities=5% Similarity=0.121 Sum_probs=10.1
Q ss_pred CCCCcEEE-e--ccccceEEEeCC
Q 016941 89 DSGDSEFK-L--DRSGPFYFISGN 109 (380)
Q Consensus 89 SsGndvVt-L--dkpG~yYFICGV 109 (380)
.+|...+. . +++-..|+.|..
T Consensus 75 ~~G~v~~~~~~~~~p~tl~vtt~~ 98 (234)
T PF06586_consen 75 VTGSVYVSPTYSSKPFTLFVTTEK 98 (234)
T ss_pred ccCcEEEEecCCCCCEEEEEEeCC
Confidence 45554443 2 234455666554
No 106
>PF12115 Salp15: Salivary protein of 15kDa inhibits CD4+ T cell activation; InterPro: IPR021971 This is a family of 15kDa salivary proteins from Acari Arachnids that is induced on feeding and assists the parasite to remain attached to its arthropod host. By repressing calcium fluxes triggered by TCR engagement, Salp15 inhibits CD4+ T cell activation. Salp15 shows weak similarity to Inhibin A, a member of the TGF-beta superfamily that inhibits the production of cytokines and the proliferation of T cells.
Probab=20.93 E-value=16 Score=31.40 Aligned_cols=73 Identities=16% Similarity=0.320 Sum_probs=39.8
Q ss_pred CCcccccCCCeEecCceeeeeeecCCceEEEecc--cCCCCCCCCCCccccCCCCcEEEecc-ccceEEEeC-CCCcCCC
Q 016941 40 ENYNKWSGRNRFLVNDTLFFKYKKGSDSVLLVNK--DDYDSCNTKKPLLKLDSGDSEFKLDR-SGPFYFISG-NHDHCQK 115 (380)
Q Consensus 40 ~nYt~WAS~kTF~VGDTLVFkY~aG~HSVveVnK--~dYdsCn~snpI~~fSsGndvVtLdk-pG~yYFICG-V~gHCq~ 115 (380)
.+|.+|..+-+=...+.|.+.-....|.....+. -+|..|.+.=. ..+++.+.+++.- .|+ -|| .+.-|++
T Consensus 34 ~~~p~~i~~~~~~~~~~l~~~C~~~~~~~~~in~~~v~f~~Ctf~C~--~~~~~~~~~~~~Lpdgt---PCg~~~~~C~~ 108 (118)
T PF12115_consen 34 VKFPSLIGNCKDALANKLLSICSEKKHYFTKINDKLVDFKNCTFTCK--EHNNGFTNVTLRLPDGT---PCGPNGQTCKN 108 (118)
T ss_pred ccCcccCccchHHHHHHHHHHHccccccccccCcccccccCcEEEEE--eccCCCcceeEeCCCCC---ccCCCcCEECC
Confidence 5577777664436667777777653343333332 25778876532 2345555555432 133 377 5566655
Q ss_pred CC
Q 016941 116 GQ 117 (380)
Q Consensus 116 GM 117 (380)
|.
T Consensus 109 G~ 110 (118)
T PF12115_consen 109 GK 110 (118)
T ss_pred Cc
Confidence 54
No 107
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=20.93 E-value=65 Score=24.71 Aligned_cols=22 Identities=14% Similarity=0.067 Sum_probs=18.9
Q ss_pred CcccccCCCeEecCceeeeeee
Q 016941 41 NYNKWSGRNRFLVNDTLFFKYK 62 (380)
Q Consensus 41 nYt~WAS~kTF~VGDTLVFkY~ 62 (380)
...+|+....+++||.|+|...
T Consensus 27 ~~~k~~~~~~~~~Gd~v~ytit 48 (76)
T PF01345_consen 27 SITKTVNPSTANPGDTVTYTIT 48 (76)
T ss_pred EEEEecCCCcccCCCEEEEEEE
Confidence 4578889999999999999874
No 108
>PRK01904 hypothetical protein; Provisional
Probab=20.29 E-value=3.3e+02 Score=25.85 Aligned_cols=9 Identities=0% Similarity=0.198 Sum_probs=5.9
Q ss_pred ceeeeeeec
Q 016941 55 DTLFFKYKK 63 (380)
Q Consensus 55 DTLVFkY~a 63 (380)
-.|+|+|..
T Consensus 59 hQIv~ry~~ 67 (219)
T PRK01904 59 HQVVVRVSE 67 (219)
T ss_pred eEEEEEEee
Confidence 457777765
No 109
>MTH00027 COX2 cytochrome c oxidase subunit II; Provisional
Probab=20.00 E-value=1.2e+02 Score=29.93 Aligned_cols=30 Identities=23% Similarity=0.449 Sum_probs=24.6
Q ss_pred EEEeccccceEEEeCCCCcCCCC---CeEEEEecC
Q 016941 94 EFKLDRSGPFYFISGNHDHCQKG---QKLIVVVLH 125 (380)
Q Consensus 94 vVtLdkpG~yYFICGV~gHCq~G---MKLaInV~a 125 (380)
.+..+++|.||-.|.. .|..| |.+.|.|..
T Consensus 217 ~~~~~~~G~y~g~CsE--~CG~~Hs~Mpi~v~vv~ 249 (262)
T MTH00027 217 GFLIKRPGIFYGQCSE--ICGANHSFMPIVVESVS 249 (262)
T ss_pred EEEcCCcEEEEEEcch--hcCcCcCCCeEEEEEEC
Confidence 5678999999999986 77664 888888765
Done!