Query 016943
Match_columns 380
No_of_seqs 172 out of 409
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 06:21:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016943.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016943hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4i95_A Putative uncharacterize 77.2 18 0.0006 31.6 9.8 77 203-289 10-86 (142)
2 4gzv_A Hypothetical protein; A 60.0 72 0.0025 27.8 10.0 70 203-283 10-81 (142)
3 2kvu_A MKL/myocardin-like prot 19.5 2.3E+02 0.0077 22.1 5.7 43 149-197 26-68 (75)
4 3oei_C RELK (toxin RV3358); to 16.1 1.6E+02 0.0055 23.5 4.3 19 176-195 33-51 (96)
5 2a6s_A Toxin YOEB; YEFM, antit 12.5 2.5E+02 0.0085 20.3 4.3 20 176-196 21-40 (84)
6 2ia9_A Putative septation prot 12.3 1.4E+02 0.0049 24.3 3.0 24 346-370 21-49 (100)
7 1z8m_A Conserved hypothetical 11.6 1.6E+02 0.0056 21.6 3.0 16 180-195 25-40 (88)
8 1use_A VAsp, vasodilator-stimu 10.9 3.6E+02 0.012 19.1 4.3 18 150-167 5-22 (45)
9 2i9z_A Putative septation prot 10.0 2E+02 0.0069 23.7 3.2 24 346-370 21-49 (105)
10 2i9x_A Putative septation prot 9.9 2.1E+02 0.0071 22.7 3.1 24 346-370 21-49 (87)
No 1
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=77.24 E-value=18 Score=31.61 Aligned_cols=77 Identities=14% Similarity=0.126 Sum_probs=53.7
Q ss_pred cCCcceEEEEEeccccchhhhhcCCCCcceecceEEEEeCCCCeEEEEEEecCCCcceEEEEEEEEEEcCCCeEEEEEee
Q 016943 203 GVLDGNWVLVYTAFSELLPLLAAGAIPLLKVEKICQKIDTSSLTIENSTTLSSPFASFSFSATASFEVRSPSRIQVQFKE 282 (380)
Q Consensus 203 ~lL~G~W~LvYTSs~~~~plLa~GrlPfv~vG~I~Q~ID~~~~~v~N~Vefs~P~l~~sv~v~Asfev~s~~Rv~V~Fe~ 282 (380)
..|.|-|+|..-.+..- +-...++.+..+.+|.. .+++.|.+-.. -..+.+...+.|+..++....-..++
T Consensus 10 ~~L~GvWQ~C~y~s~~p------d~~g~L~psn~lKIlSd-DgtF~Ni~m~~--~~~aiIt~~GtY~~~SD~~Y~E~IeK 80 (142)
T 4i95_A 10 AHLQGIWQLCHYVSENP------DIPGVLKPSNTFKVLSD-DGRIVNFTIRP--GTDAIITGYGTYRQISAAAYKESIEK 80 (142)
T ss_dssp CSCCEEEEEEEEECSST------TSCCEEEEEEEEEEECT-TSEEEEEECCT--TSCCEEEEEEEEEEEETTEEEEEEEE
T ss_pred ccceeEeEEEEEecCCC------CCceEeccCccEEEEcC-CCcEEEEEEec--CCCcEEEEeEEEEecCCcceeeeecc
Confidence 46999999987765531 11112556677777765 57999999873 23456788999999999887777776
Q ss_pred eeecCCC
Q 016943 283 GTLQPPD 289 (380)
Q Consensus 283 ~~l~pp~ 289 (380)
. +-.|+
T Consensus 81 n-i~lp~ 86 (142)
T 4i95_A 81 N-IHLPM 86 (142)
T ss_dssp E-SSSGG
T ss_pred c-ccCcc
Confidence 4 44444
No 2
>4gzv_A Hypothetical protein; AN eight-stranded beta barrel, lipocalin family, structural joint center for structural genomics, JCSG; 1.95A {Bacteroides ovatus}
Probab=59.99 E-value=72 Score=27.81 Aligned_cols=70 Identities=17% Similarity=0.159 Sum_probs=47.9
Q ss_pred cCCcceEEEEEec-cccchhhhhcCCCCc-ceecceEEEEeCCCCeEEEEEEecCCCcceEEEEEEEEEEcCCCeEEEEE
Q 016943 203 GVLDGNWVLVYTA-FSELLPLLAAGAIPL-LKVEKICQKIDTSSLTIENSTTLSSPFASFSFSATASFEVRSPSRIQVQF 280 (380)
Q Consensus 203 ~lL~G~W~LvYTS-s~~~~plLa~GrlPf-v~vG~I~Q~ID~~~~~v~N~Vefs~P~l~~sv~v~Asfev~s~~Rv~V~F 280 (380)
.-|.|-|+|++-. ...-. ++ +..+..+-+|.. .|++.|.+-.. -....+...+.|+..++....-..
T Consensus 10 ~~L~GvWQ~c~y~~~~~~~--------~~~l~~s~~~KIlS~-DgtF~N~~m~~--~~~aiIt~yGtY~l~SD~~Y~E~i 78 (142)
T 4gzv_A 10 ADLKGIWQLCHYVSESPDV--------PGALKPSNTFKVLSD-DGRIVNFTIIP--GADAIITGYGTYKQLTDDSYKESI 78 (142)
T ss_dssp CCCCEEEEEEEEEESSTTS--------CCEEEEEEEEEEECT-TSEEEEEECCT--TSCCEEEEEEEEEEEETTEEEEEE
T ss_pred ccceEEeEEeeEeecCCCC--------CceEeecCceEEECC-CCcEEEEEEeC--CCCcEEEEeEEEEecCCCeeeeee
Confidence 4699999998443 32211 22 345567777775 57999998643 224567889999999998776666
Q ss_pred eee
Q 016943 281 KEG 283 (380)
Q Consensus 281 e~~ 283 (380)
++.
T Consensus 79 ~kn 81 (142)
T 4gzv_A 79 EKN 81 (142)
T ss_dssp EEE
T ss_pred ccc
Confidence 653
No 3
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=19.53 E-value=2.3e+02 Score=22.09 Aligned_cols=43 Identities=19% Similarity=0.193 Sum_probs=30.9
Q ss_pred cchhhHHHHHHHHHHHHhcCCCCccCChhhHHHHHHHHHHHHHhCCCCC
Q 016943 149 EYDDKLGDLKRCLVDTVYGTELGFRAGSDVRAEVLELVNQLEALNPTPN 197 (380)
Q Consensus 149 ~~~~~~~~lK~~LL~aiagT~RG~~As~e~R~eVeeLI~qLEalNPtp~ 197 (380)
.....+.+||++|-. ||+..+-...+-|++|.+.++..++.+.
T Consensus 26 l~klkVaeLK~eLk~------RGL~~sG~KaeLIeRL~~~~~~~~~~~~ 68 (75)
T 2kvu_A 26 LDDMKVAELKQELKL------RSLPVSGTKTELIERLRAYQDQISPVPG 68 (75)
T ss_dssp TTTSCHHHHHHHHHH------TTCCCCSCHHHHHHHHHHHHHTTSCCSS
T ss_pred HHHCcHHHHHHHHHH------cCCCCCCCHHHHHHHHHHHHHccCCCCC
Confidence 456778888887754 7887766667778888888877665543
No 4
>3oei_C RELK (toxin RV3358); toxin-antitoxin systems, protein-protein complex, tuberculos structural genomics consortium, protein binding; HET: MLZ FLC; 2.15A {Mycobacterium tuberculosis} SCOP: d.298.1.0
Probab=16.05 E-value=1.6e+02 Score=23.49 Aligned_cols=19 Identities=11% Similarity=0.394 Sum_probs=14.5
Q ss_pred hhhHHHHHHHHHHHHHhCCC
Q 016943 176 SDVRAEVLELVNQLEALNPT 195 (380)
Q Consensus 176 ~e~R~eVeeLI~qLEalNPt 195 (380)
...+..|.++|++|+. ||-
T Consensus 33 k~~~krI~~~I~~l~~-nP~ 51 (96)
T 3oei_C 33 RKTARRITRLIGEIQR-DPF 51 (96)
T ss_dssp HHHHHHHHHHHHHHHH-CTT
T ss_pred HHHHHHHHHHHHHHHh-CCC
Confidence 4567889999999874 664
No 5
>2a6s_A Toxin YOEB; YEFM, antitoxin, addiction modules, RNAse, inhibitor; 1.77A {Escherichia coli} SCOP: d.298.1.1 PDB: 2a6r_A 2a6q_E
Probab=12.55 E-value=2.5e+02 Score=20.33 Aligned_cols=20 Identities=15% Similarity=0.303 Sum_probs=13.6
Q ss_pred hhhHHHHHHHHHHHHHhCCCC
Q 016943 176 SDVRAEVLELVNQLEALNPTP 196 (380)
Q Consensus 176 ~e~R~eVeeLI~qLEalNPtp 196 (380)
......|.++|+.|.. ||-+
T Consensus 21 ~~~~~~i~~~i~~l~~-~P~~ 40 (84)
T 2a6s_A 21 KRIVKKINELIKDTRR-TPFE 40 (84)
T ss_dssp HHHHHHHHHHHHHHHH-STTS
T ss_pred HHHHHHHHHHHHHHHh-CCCC
Confidence 3445788888888865 5643
No 6
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=12.30 E-value=1.4e+02 Score=24.32 Aligned_cols=24 Identities=42% Similarity=0.688 Sum_probs=18.9
Q ss_pred ceEEEEEEecC-----CeeEEeCCCceEEE
Q 016943 346 QSWLLITYLDE-----DFRISRGDGGLFVL 370 (380)
Q Consensus 346 ~GwLdtTYLDe-----dLRIsRGdgGvFVl 370 (380)
+|...+|+ |+ ++||.-|++|+||-
T Consensus 21 kA~aSVt~-dd~fvI~dIkVieg~~GlFVa 49 (100)
T 2ia9_A 21 RAIASITL-DHEFVVHDIRVIDGNNGLFVA 49 (100)
T ss_dssp EEEEEEEE-TTTEEEEEEEEEEETTEEEEE
T ss_pred EEEEEEEE-CCEEEEeeEEEEECCCceEEE
Confidence 56766665 66 88999999999995
No 7
>1z8m_A Conserved hypothetical protein HP0894; structural genomics, helicobac pylori, unknown function; NMR {Helicobacter pylori} SCOP: d.298.1.2
Probab=11.61 E-value=1.6e+02 Score=21.57 Aligned_cols=16 Identities=19% Similarity=0.264 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHhCCC
Q 016943 180 AEVLELVNQLEALNPT 195 (380)
Q Consensus 180 ~eVeeLI~qLEalNPt 195 (380)
..+.++++.|...||-
T Consensus 25 ~~~~~~i~~l~~~~p~ 40 (88)
T 1z8m_A 25 SVLNEVILTLRKKEPL 40 (88)
T ss_dssp HHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHhcCCCC
Confidence 4688888888544654
No 8
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=10.90 E-value=3.6e+02 Score=19.09 Aligned_cols=18 Identities=22% Similarity=0.191 Sum_probs=14.5
Q ss_pred chhhHHHHHHHHHHHHhc
Q 016943 150 YDDKLGDLKRCLVDTVYG 167 (380)
Q Consensus 150 ~~~~~~~lK~~LL~aiag 167 (380)
++.+.+.+|++||+-+..
T Consensus 5 ~~~dle~~KqEIL~E~Rk 22 (45)
T 1use_A 5 DYSDLQRVKQELLEEVKK 22 (45)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 356799999999988854
No 9
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=10.03 E-value=2e+02 Score=23.67 Aligned_cols=24 Identities=46% Similarity=0.812 Sum_probs=18.9
Q ss_pred ceEEEEEEecC-----CeeEEeCCCceEEE
Q 016943 346 QSWLLITYLDE-----DFRISRGDGGLFVL 370 (380)
Q Consensus 346 ~GwLdtTYLDe-----dLRIsRGdgGvFVl 370 (380)
+|...+|+ |+ ++||.-|.+|+||-
T Consensus 21 kA~aSVt~-dd~FvI~dIKViEg~~GlFVa 49 (105)
T 2i9z_A 21 KALVSITL-DEAFVIHDLRVIEGNSGLFVA 49 (105)
T ss_dssp EEEEEEEE-TTTEEEEEEEEEEETTEEEEE
T ss_pred EEEEEEEE-CCEEEEeeEEEEECCCceEEE
Confidence 67776665 55 78899999999996
No 10
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=9.94 E-value=2.1e+02 Score=22.73 Aligned_cols=24 Identities=46% Similarity=0.812 Sum_probs=18.9
Q ss_pred ceEEEEEEecC-----CeeEEeCCCceEEE
Q 016943 346 QSWLLITYLDE-----DFRISRGDGGLFVL 370 (380)
Q Consensus 346 ~GwLdtTYLDe-----dLRIsRGdgGvFVl 370 (380)
+|...+|+ |+ ++||.-|.+|+||-
T Consensus 21 ka~asVt~-dd~fvI~~ikVieg~~GlFVa 49 (87)
T 2i9x_A 21 KALVSITL-DEAFVIHDLRVIEGNSGLFVA 49 (87)
T ss_dssp EEEEEEEE-TTTEEEEEEEEEEETTEEEEE
T ss_pred EEEEEEEE-CCEEEEeeEEEEECCCceEEE
Confidence 67776665 55 78899999999985
Done!