Query 016943
Match_columns 380
No_of_seqs 172 out of 409
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 06:22:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016943.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016943hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ua7a1 b.71.1.1 (A:348-425) B 18.0 28 0.0021 25.4 2.1 19 358-376 15-33 (78)
2 d1mu2a2 e.8.1.2 (A:3-429) HIV- 15.7 53 0.0039 30.7 4.0 43 172-214 22-74 (427)
3 d2gyc31 a.108.1.1 (3:2-48) Rib 14.0 94 0.0069 20.5 3.7 30 158-196 3-32 (47)
4 d1kwga1 b.71.1.1 (A:591-644) A 13.1 47 0.0034 22.6 2.1 17 354-371 4-21 (54)
5 d1c0aa1 b.40.4.1 (A:1-106) Asp 10.9 83 0.006 23.3 3.1 22 346-376 21-43 (106)
6 d2gu3a1 d.17.1.6 (A:99-161) Un 9.2 73 0.0053 22.2 2.0 14 348-361 33-46 (63)
7 d1n9wa1 b.40.4.1 (A:1-93) Aspa 8.5 80 0.0058 22.7 2.1 16 361-376 25-41 (93)
8 d1dkza1 a.8.4.1 (A:507-603) Dn 8.2 87 0.0063 22.7 2.2 46 148-193 20-70 (97)
9 d2bmoa1 b.33.1.2 (A:3-152) Nit 7.9 1.4E+02 0.01 23.4 3.5 25 347-371 49-74 (150)
10 d1qpza1 a.35.1.5 (A:2-58) Puri 7.7 1.2E+02 0.0086 20.4 2.5 18 173-190 26-43 (57)
No 1
>d1ua7a1 b.71.1.1 (A:348-425) Bacterial alpha-Amylase {Bacillus subtilis [TaxId: 1423]}
Probab=17.98 E-value=28 Score=25.40 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=14.1
Q ss_pred eeEEeCCCceEEEEecCCC
Q 016943 358 FRISRGDGGLFVLVKEGSP 376 (380)
Q Consensus 358 LRIsRGdgGvFVl~R~~s~ 376 (380)
+-|+||++|++++-.+++.
T Consensus 15 ~~~~RG~kGfvaiN~~~~~ 33 (78)
T d1ua7a1 15 FMNQRGSHGVVLANAGSSS 33 (78)
T ss_dssp EEEEETTTEEEEEECSSSC
T ss_pred EEEecCCcEEEEEeCCCCc
Confidence 3458999997777776654
No 2
>d1mu2a2 e.8.1.2 (A:3-429) HIV-1 reverse transcriptase {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=15.68 E-value=53 Score=30.66 Aligned_cols=43 Identities=14% Similarity=0.319 Sum_probs=27.8
Q ss_pred ccCChhhHHHHHHHHHHHHHhCC-----CCCCCCcccC----C-cceEEEEEe
Q 016943 172 FRAGSDVRAEVLELVNQLEALNP-----TPNPVNAAGV----L-DGNWVLVYT 214 (380)
Q Consensus 172 ~~As~e~R~eVeeLI~qLEalNP-----tp~Pt~sp~l----L-~G~W~LvYT 214 (380)
-..+.++++++.++|++|+..+- ...|-.+|-. = .|+||++--
T Consensus 22 ~pl~~ek~~al~~~i~ell~~G~I~~~ps~Sp~~sPvf~V~KKd~gk~Rl~vD 74 (427)
T d1mu2a2 22 WPLTKEKIEALKEICEKMEKEGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLID 74 (427)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTSEEECCTTCCCBBCEEECCCCC----CEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHHCCeEEeCCCCCcCcCceEEEEcCCCCCcEEEEc
Confidence 45789999999999999999883 3344444311 1 499999854
No 3
>d2gyc31 a.108.1.1 (3:2-48) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Escherichia coli [TaxId: 562]}
Probab=13.97 E-value=94 Score=20.51 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=23.8
Q ss_pred HHHHHHHHhcCCCCccCChhhHHHHHHHHHHHHHhCCCC
Q 016943 158 KRCLVDTVYGTELGFRAGSDVRAEVLELVNQLEALNPTP 196 (380)
Q Consensus 158 K~~LL~aiagT~RG~~As~e~R~eVeeLI~qLEalNPtp 196 (380)
|+++|++|+... --+|.+||..+|..-...
T Consensus 3 ke~Ileaia~MS---------VmdvveLi~amEEKFGVs 32 (47)
T d2gyc31 3 KDQIIEAVAAMS---------VMDVVELISAMEEKFGVS 32 (47)
T ss_dssp HHHHHHHHHHSC---------HHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHhh---------HHHHHHHHHHHHHHhCcc
Confidence 789999998743 357999999999886543
No 4
>d1kwga1 b.71.1.1 (A:591-644) A4 beta-galactosidase {Thermus thermophilus [TaxId: 274]}
Probab=13.12 E-value=47 Score=22.58 Aligned_cols=17 Identities=35% Similarity=0.684 Sum_probs=11.6
Q ss_pred ecCCeeEEeCCCc-eEEEE
Q 016943 354 LDEDFRISRGDGG-LFVLV 371 (380)
Q Consensus 354 LDedLRIsRGdgG-vFVl~ 371 (380)
|.|.|||.| -|+ +|+|-
T Consensus 4 LPeglRvrr-RG~l~fafN 21 (54)
T d1kwga1 4 LPEGLRLRR-RGTWVFAFN 21 (54)
T ss_dssp CCTTEEEEE-ETTEEEEEE
T ss_pred cCCceEEEE-ECCEEEEEe
Confidence 678899998 234 66653
No 5
>d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]}
Probab=10.88 E-value=83 Score=23.34 Aligned_cols=22 Identities=18% Similarity=0.451 Sum_probs=17.0
Q ss_pred ceEEEEEEecCCeeEEeCCCc-eEEEEecCCC
Q 016943 346 QSWLLITYLDEDFRISRGDGG-LFVLVKEGSP 376 (380)
Q Consensus 346 ~GwLdtTYLDedLRIsRGdgG-vFVl~R~~s~ 376 (380)
.||+.. .|+.|+ .||..|+++-
T Consensus 21 ~GWv~~---------~R~~g~i~Fi~LRD~~G 43 (106)
T d1c0aa1 21 CGWVNR---------RRDLGSLIFIDMRDREG 43 (106)
T ss_dssp EEEEEE---------EEECSSCEEEEEEETTE
T ss_pred EEEEEE---------eeeCCCcEEEEEEcCCe
Confidence 689743 477888 9999998863
No 6
>d2gu3a1 d.17.1.6 (A:99-161) Uncharacterized protein YpmB {Bacillus subtilis [TaxId: 1423]}
Probab=9.20 E-value=73 Score=22.19 Aligned_cols=14 Identities=36% Similarity=0.468 Sum_probs=10.1
Q ss_pred EEEEEEecCCeeEE
Q 016943 348 WLLITYLDEDFRIS 361 (380)
Q Consensus 348 wLdtTYLDedLRIs 361 (380)
..++||+|++=|.+
T Consensus 33 vWEVtY~~~~~~l~ 46 (63)
T d2gu3a1 33 LWEVTYLDKEGQYS 46 (63)
T ss_dssp EEEEEEECTTSCEE
T ss_pred EEEEEEEeCCCCEE
Confidence 34999999875443
No 7
>d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]}
Probab=8.54 E-value=80 Score=22.69 Aligned_cols=16 Identities=31% Similarity=0.505 Sum_probs=13.2
Q ss_pred EeCCCc-eEEEEecCCC
Q 016943 361 SRGDGG-LFVLVKEGSP 376 (380)
Q Consensus 361 sRGdgG-vFVl~R~~s~ 376 (380)
.|..|+ .|+..|+++-
T Consensus 25 ~R~~gk~~Fi~LrD~sg 41 (93)
T d1n9wa1 25 RRDLGRIQFLLLRDRSG 41 (93)
T ss_dssp EEECSSEEEEEEEETTE
T ss_pred EEeCCCcEEEEEEcCCc
Confidence 577788 9999999874
No 8
>d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]}
Probab=8.22 E-value=87 Score=22.66 Aligned_cols=46 Identities=13% Similarity=0.057 Sum_probs=34.7
Q ss_pred ccchhhHHHHHHHHHHHHhcCCC-----CccCChhhHHHHHHHHHHHHHhC
Q 016943 148 EEYDDKLGDLKRCLVDTVYGTEL-----GFRAGSDVRAEVLELVNQLEALN 193 (380)
Q Consensus 148 ~~~~~~~~~lK~~LL~aiagT~R-----G~~As~e~R~eVeeLI~qLEalN 193 (380)
|...+++.++|.++=..|+.+.+ |-..+.+++..|...|..|...-
T Consensus 20 D~~~r~~ie~rn~ae~~i~~~e~~l~e~~~~l~~~~k~~i~~~i~~l~~~l 70 (97)
T d1dkza1 20 DRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETAL 70 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHH
Confidence 34456677777777777777643 55688999999999999998764
No 9
>d2bmoa1 b.33.1.2 (A:3-152) Nitrobenzene dioxygenase alpha subunit, NBDO-alpha {Comamonas sp. JS765 [TaxId: 58226]}
Probab=7.94 E-value=1.4e+02 Score=23.42 Aligned_cols=25 Identities=12% Similarity=0.263 Sum_probs=20.4
Q ss_pred eEEEEEEecCCeeEEeCCCc-eEEEE
Q 016943 347 SWLLITYLDEDFRISRGDGG-LFVLV 371 (380)
Q Consensus 347 GwLdtTYLDedLRIsRGdgG-vFVl~ 371 (380)
-++-++++++.+-|.|+..| +-++.
T Consensus 49 d~~~~~i~~~~~vv~R~~dg~i~af~ 74 (150)
T d2bmoa1 49 DYVKAKMGVDEVIVSRQNDGSVRAFL 74 (150)
T ss_dssp EEEEEEETTEEEEEEECTTSCEEEEE
T ss_pred ceeeeeecCceeEEEecCCCchhhhh
Confidence 37778889999999999888 76654
No 10
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=7.66 E-value=1.2e+02 Score=20.37 Aligned_cols=18 Identities=17% Similarity=0.302 Sum_probs=15.6
Q ss_pred cCChhhHHHHHHHHHHHH
Q 016943 173 RAGSDVRAEVLELVNQLE 190 (380)
Q Consensus 173 ~As~e~R~eVeeLI~qLE 190 (380)
..+++.|++|.+++++|-
T Consensus 26 ~vs~~tr~rV~~~a~~lg 43 (57)
T d1qpza1 26 FVAEETRNAVWAAIKELH 43 (57)
T ss_dssp CCCHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHHC
Confidence 478999999999999874
Done!