Query 016945
Match_columns 380
No_of_seqs 279 out of 1684
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 04:13:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016945.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016945hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2661 Peptidase family M48 [ 100.0 6.4E-65 1.4E-69 494.6 13.7 304 1-378 44-360 (424)
2 COG4783 Putative Zn-dependent 100.0 1.3E-27 2.7E-32 243.5 19.2 176 121-378 32-226 (484)
3 COG4784 Putative Zn-dependent 99.9 4.8E-26 1E-30 223.9 14.3 179 118-378 21-211 (479)
4 PF01435 Peptidase_M48: Peptid 99.7 6.5E-18 1.4E-22 155.0 7.7 137 235-378 28-193 (226)
5 COG0501 HtpX Zn-dependent prot 99.7 1.4E-16 3.1E-21 152.9 8.6 99 261-360 115-232 (302)
6 PRK03982 heat shock protein Ht 99.6 4.5E-15 9.7E-20 144.7 12.5 114 264-378 86-227 (288)
7 PRK02870 heat shock protein Ht 99.6 3E-14 6.5E-19 142.3 18.5 115 263-378 133-273 (336)
8 PRK01345 heat shock protein Ht 99.6 5.9E-15 1.3E-19 146.2 12.7 114 264-378 85-223 (317)
9 PRK03001 M48 family peptidase; 99.5 4.6E-14 1E-18 137.2 13.2 114 264-378 85-222 (283)
10 PRK03072 heat shock protein Ht 99.5 9.8E-14 2.1E-18 135.7 12.5 134 236-378 68-227 (288)
11 PRK04897 heat shock protein Ht 99.5 2.7E-13 5.9E-18 133.1 13.8 114 264-378 98-247 (298)
12 PRK05457 heat shock protein Ht 99.4 2.7E-12 5.7E-17 125.5 12.8 57 263-320 94-154 (284)
13 PRK02391 heat shock protein Ht 99.4 3.2E-12 6.8E-17 125.7 12.9 59 264-323 94-156 (296)
14 PRK01265 heat shock protein Ht 99.4 5.5E-12 1.2E-16 125.6 12.8 60 263-323 100-163 (324)
15 KOG2719 Metalloprotease [Gener 98.1 1.7E-05 3.7E-10 81.7 11.2 107 265-372 236-381 (428)
16 PF13203 DUF2201_N: Putative m 96.7 0.0026 5.5E-08 62.1 5.9 55 266-321 27-81 (292)
17 PF05569 Peptidase_M56: BlaR1 96.5 0.0074 1.6E-07 58.9 7.1 59 265-324 159-220 (299)
18 PF06114 DUF955: Domain of unk 95.2 0.059 1.3E-06 43.8 6.3 51 264-319 6-61 (122)
19 PF04228 Zn_peptidase: Putativ 94.6 0.036 7.9E-07 55.1 4.0 44 273-316 136-186 (292)
20 PF13699 DUF4157: Domain of un 92.5 0.086 1.9E-06 42.6 2.2 39 273-314 37-75 (79)
21 PF10263 SprT-like: SprT-like 91.0 0.58 1.3E-05 41.2 6.0 33 283-316 44-76 (157)
22 smart00731 SprT SprT homologue 90.9 0.32 7E-06 43.1 4.3 33 281-314 41-73 (146)
23 COG4219 MecR1 Antirepressor re 89.2 1.1 2.4E-05 45.3 6.9 47 274-321 165-211 (337)
24 PRK04351 hypothetical protein; 89.0 0.64 1.4E-05 42.0 4.7 36 276-312 38-73 (149)
25 COG2321 Predicted metalloprote 88.6 0.37 8.1E-06 47.7 3.0 40 276-315 136-182 (295)
26 PF10026 DUF2268: Predicted Zn 87.5 1.1 2.4E-05 41.6 5.4 34 282-317 49-82 (195)
27 PF12388 Peptidase_M57: Dual-a 87.4 0.48 1.1E-05 45.2 3.0 35 280-317 116-151 (211)
28 COG1451 Predicted metal-depend 86.4 1.1 2.4E-05 43.0 4.8 49 270-320 147-195 (223)
29 PF04450 BSP: Peptidase of pla 86.2 1.8 4E-05 41.0 6.2 35 282-316 74-112 (205)
30 PF13485 Peptidase_MA_2: Pepti 83.6 1.7 3.7E-05 35.4 4.2 24 295-318 20-43 (128)
31 PF01863 DUF45: Protein of unk 81.6 1.5 3.3E-05 40.0 3.5 53 265-319 131-183 (205)
32 PRK04860 hypothetical protein; 77.3 2.8 6.1E-05 38.3 3.7 35 281-316 45-79 (160)
33 PF00413 Peptidase_M10: Matrix 76.7 1.7 3.6E-05 37.7 2.0 22 295-316 100-122 (154)
34 COG2856 Predicted Zn peptidase 75.8 3 6.5E-05 39.9 3.6 31 282-317 59-89 (213)
35 PF10463 Peptidase_U49: Peptid 75.7 1.9 4E-05 41.1 2.2 20 299-318 100-119 (206)
36 COG3590 PepO Predicted metallo 74.2 0.78 1.7E-05 49.6 -0.9 44 273-316 450-503 (654)
37 cd04279 ZnMc_MMP_like_1 Zinc-d 74.2 2.1 4.5E-05 37.8 2.0 22 297-318 101-123 (156)
38 PF01431 Peptidase_M13: Peptid 71.8 3.5 7.5E-05 37.9 2.9 44 275-318 1-54 (206)
39 cd04270 ZnMc_TACE_like Zinc-de 71.6 2.6 5.5E-05 40.6 2.1 33 284-316 146-183 (244)
40 cd04276 ZnMc_MMP_like_2 Zinc-d 71.4 3.1 6.8E-05 39.1 2.6 50 266-315 65-132 (197)
41 cd04268 ZnMc_MMP_like Zinc-dep 71.2 3 6.5E-05 36.6 2.3 19 296-314 90-108 (165)
42 cd04269 ZnMc_adamalysin_II_lik 68.9 3.5 7.5E-05 37.6 2.2 16 297-312 128-143 (194)
43 PF01447 Peptidase_M4: Thermol 68.7 3 6.6E-05 37.6 1.8 50 262-315 97-150 (150)
44 PF01421 Reprolysin: Reprolysi 68.2 4.3 9.3E-05 37.2 2.7 18 295-312 126-143 (199)
45 PF13688 Reprolysin_5: Metallo 66.7 3.5 7.7E-05 37.4 1.8 18 296-313 138-155 (196)
46 cd00203 ZnMc Zinc-dependent me 63.0 3.6 7.8E-05 36.0 1.1 20 297-316 93-113 (167)
47 PF13582 Reprolysin_3: Metallo 63.0 4.2 9.2E-05 34.0 1.5 11 302-312 109-119 (124)
48 PF14891 Peptidase_M91: Effect 62.9 4.6 9.9E-05 36.8 1.8 17 296-312 99-115 (174)
49 cd04267 ZnMc_ADAM_like Zinc-de 62.9 3 6.5E-05 37.9 0.6 16 297-312 130-145 (192)
50 cd04272 ZnMc_salivary_gland_MP 61.7 4.9 0.00011 37.7 1.8 15 299-313 144-158 (220)
51 COG3091 SprT Zn-dependent meta 61.1 9.6 0.00021 34.9 3.5 31 283-314 45-75 (156)
52 PF02031 Peptidase_M7: Strepto 58.7 5.9 0.00013 35.3 1.6 47 262-312 40-89 (132)
53 PRK09672 phage exclusion prote 58.6 6.2 0.00013 39.7 2.0 30 283-317 153-182 (305)
54 TIGR02411 leuko_A4_hydro leuko 57.1 8.9 0.00019 41.8 3.1 31 282-315 264-294 (601)
55 PF13574 Reprolysin_2: Metallo 56.8 6.4 0.00014 35.8 1.6 17 300-316 111-127 (173)
56 TIGR02289 M3_not_pepF oligoend 56.1 8.3 0.00018 41.3 2.6 44 271-318 309-355 (549)
57 cd04278 ZnMc_MMP Zinc-dependen 55.9 5.4 0.00012 35.3 1.0 20 297-316 104-124 (157)
58 KOG1047 Bifunctional leukotrie 55.6 5.7 0.00012 43.1 1.3 31 283-316 274-304 (613)
59 PF01433 Peptidase_M1: Peptida 55.0 16 0.00034 36.4 4.3 53 264-316 254-311 (390)
60 KOG3624 M13 family peptidase [ 54.2 9.5 0.00021 41.8 2.7 45 273-317 481-535 (687)
61 cd04277 ZnMc_serralysin_like Z 53.8 10 0.00022 34.4 2.5 37 282-318 94-132 (186)
62 COG2738 Predicted Zn-dependent 53.4 8 0.00017 37.0 1.7 21 301-321 93-113 (226)
63 smart00235 ZnMc Zinc-dependent 52.6 7.3 0.00016 33.5 1.3 31 276-312 67-98 (140)
64 PF04298 Zn_peptidase_2: Putat 52.2 8.7 0.00019 37.1 1.8 19 301-319 90-108 (222)
65 COG3864 Uncharacterized protei 51.6 15 0.00033 37.5 3.4 39 281-320 51-89 (396)
66 TIGR02412 pepN_strep_liv amino 51.4 16 0.00034 41.4 3.9 45 272-316 254-303 (831)
67 PF13583 Reprolysin_4: Metallo 50.5 8.3 0.00018 36.2 1.3 17 302-318 139-156 (206)
68 cd04271 ZnMc_ADAM_fungal Zinc- 50.1 5.9 0.00013 37.9 0.3 14 302-315 147-160 (228)
69 TIGR00181 pepF oligoendopeptid 49.6 10 0.00023 40.7 2.1 42 270-317 350-395 (591)
70 PF08325 WLM: WLM domain; Int 49.1 16 0.00034 34.2 3.0 27 296-322 78-104 (186)
71 PF14521 Aspzincin_M35: Lysine 47.6 23 0.0005 31.6 3.7 39 272-310 64-106 (148)
72 PF06861 BALF1: BALF1 protein; 46.8 17 0.00036 34.0 2.6 28 291-318 123-150 (182)
73 cd04273 ZnMc_ADAMTS_like Zinc- 46.2 2.8 6.1E-05 38.9 -2.5 13 300-312 140-152 (207)
74 cd06459 M3B_Oligoendopeptidase 45.2 18 0.00039 36.6 3.0 43 272-318 195-240 (427)
75 PF05572 Peptidase_M43: Pregna 44.6 12 0.00027 33.6 1.5 25 296-320 65-90 (154)
76 PF13402 M60-like: Peptidase M 43.8 29 0.00063 33.7 4.1 51 265-315 179-234 (307)
77 TIGR02414 pepN_proteo aminopep 42.7 14 0.00031 42.1 1.9 17 299-315 282-298 (863)
78 PF10023 DUF2265: Predicted am 42.0 15 0.00032 37.7 1.7 45 274-321 140-189 (337)
79 PF12315 DUF3633: Protein of u 40.3 19 0.00041 34.6 2.0 17 299-315 92-108 (212)
80 PRK14015 pepN aminopeptidase N 39.4 21 0.00046 40.8 2.6 24 72-95 112-135 (875)
81 PF14247 DUF4344: Domain of un 38.6 60 0.0013 31.3 5.2 52 264-315 39-107 (220)
82 KOG1046 Puromycin-sensitive am 37.9 31 0.00068 39.4 3.7 48 269-316 286-340 (882)
83 cd04327 ZnMc_MMP_like_3 Zinc-d 37.7 24 0.00052 32.6 2.3 20 298-317 90-109 (198)
84 PF02163 Peptidase_M50: Peptid 37.6 24 0.00051 31.9 2.2 15 300-314 7-21 (192)
85 COG0308 PepN Aminopeptidase N 36.9 28 0.0006 39.7 3.0 50 267-316 267-323 (859)
86 PF01457 Peptidase_M8: Leishma 35.1 32 0.0007 36.8 3.0 56 260-316 158-226 (521)
87 cd06161 S2P-M50_SpoIVFB SpoIVF 33.2 30 0.00064 32.4 2.2 15 299-313 37-51 (208)
88 PF09768 Peptidase_M76: Peptid 32.6 39 0.00084 31.4 2.7 19 294-312 65-83 (173)
89 PF13398 Peptidase_M50B: Pepti 32.4 31 0.00068 32.2 2.2 15 299-313 21-35 (200)
90 PF09715 Plasmod_dom_1: Plasmo 31.5 20 0.00044 28.5 0.6 31 2-32 1-31 (67)
91 COG3824 Predicted Zn-dependent 30.6 35 0.00075 30.4 2.0 23 132-154 11-33 (136)
92 PTZ00337 surface protease GP63 29.2 1E+02 0.0022 33.8 5.6 52 260-314 180-243 (567)
93 KOG3658 Tumor necrosis factor- 28.6 16 0.00034 40.6 -0.6 33 281-313 368-405 (764)
94 PF12725 DUF3810: Protein of u 28.4 33 0.00071 34.6 1.7 14 299-312 195-208 (318)
95 COG4324 Predicted aminopeptida 27.5 44 0.00095 33.7 2.3 55 262-322 163-222 (376)
96 cd05709 S2P-M50 Site-2 proteas 27.4 44 0.00095 30.0 2.2 13 300-312 8-20 (180)
97 KOG3607 Meltrins, fertilins an 27.2 36 0.00079 38.2 1.9 23 296-318 319-341 (716)
98 TIGR01519 plasmod_dom_1 Plasmo 26.7 29 0.00062 27.8 0.7 31 2-32 1-31 (70)
99 cd06164 S2P-M50_SpoIVFB_CBS Sp 25.5 48 0.001 31.7 2.2 14 300-313 53-66 (227)
100 PRK06926 flagellar motor prote 25.3 2.9E+02 0.0063 27.4 7.6 37 285-321 112-150 (271)
101 PF06262 DUF1025: Possibl zinc 25.3 1.3E+02 0.0028 25.4 4.4 35 278-313 47-86 (97)
102 PF07225 NDUF_B4: NADH-ubiquin 25.1 41 0.00088 29.8 1.4 37 72-116 62-99 (125)
103 TIGR03296 M6dom_TIGR03296 M6 f 23.9 18 0.00039 35.6 -1.1 12 301-312 166-177 (286)
104 PF01432 Peptidase_M3: Peptida 23.8 45 0.00098 34.5 1.7 18 296-314 239-256 (458)
105 cd06160 S2P-M50_like_2 Unchara 23.7 56 0.0012 30.4 2.2 14 300-313 41-54 (183)
106 PF01400 Astacin: Astacin (Pep 23.7 50 0.0011 30.5 1.8 17 301-317 80-96 (191)
107 PF05960 DUF885: Bacterial pro 23.1 4.2E+02 0.0091 28.0 8.8 55 258-313 319-387 (549)
108 cd04281 ZnMc_BMP1_TLD Zinc-dep 22.6 44 0.00095 31.6 1.2 18 301-318 88-105 (200)
109 PTZ00257 Glycoprotein GP63 (le 22.2 1.9E+02 0.0041 32.2 6.0 55 260-315 204-271 (622)
110 cd04283 ZnMc_hatching_enzyme Z 22.0 46 0.001 31.0 1.2 17 301-317 78-94 (182)
111 cd06159 S2P-M50_PDZ_Arch Uncha 21.3 64 0.0014 31.7 2.2 33 275-313 97-131 (263)
112 COG4900 Predicted metallopepti 21.0 79 0.0017 27.9 2.4 28 286-314 67-94 (133)
113 cd06455 M3A_TOP Peptidase M3 T 20.9 60 0.0013 34.1 2.0 19 297-316 261-279 (472)
114 TIGR02290 M3_fam_3 oligoendope 20.8 53 0.0012 35.4 1.6 41 270-316 346-391 (587)
115 COG1164 Oligoendopeptidase F [ 20.7 50 0.0011 36.2 1.4 52 266-321 347-401 (598)
No 1
>KOG2661 consensus Peptidase family M48 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-65 Score=494.64 Aligned_cols=304 Identities=32% Similarity=0.496 Sum_probs=275.7
Q ss_pred ChhhhhhhHHHHHHhh-cccCCCCCCCcccccc-ccccCC----CCCcccccCCcccceecccccccccCCCCCCCCcce
Q 016945 1 MAYYRRAKAALDAFRN-LSSKAVPKSPVQESCS-RVYSNG----SANSAKFSSGFYSYSCISQRLRNSYCNPNFNTAKRY 74 (380)
Q Consensus 1 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 74 (380)
|.|||+.|+.+|.+++ ++++|.|++....+.+ .+.++. .+...|.+.|++++.+.-+.++..-+|||.+.+.+|
T Consensus 44 ~~~~~~~~~~~~~l~~~~~~~i~~~t~~~t~~n~~~~~~~~~~~~t~v~S~~v~l~~~~~s~Rn~Ng~~y~rFqsnp~~y 123 (424)
T KOG2661|consen 44 HFYSTFNNKRTGGLSSTKSKEIWRITSKCTVWNDAFSRQLLIKEVTAVPSLSVLLPLSPASIRNINGHTYPRFQSNPVPY 123 (424)
T ss_pred eeeeeecchhcccccccCCccceecccccceehhhhhhccchhhhhcccccccccccchhhhhccCccccchhhcCCccH
Confidence 6899999999999999 9999999999877776 333222 344478889999999999999999999999999999
Q ss_pred eEeecceeeeeccCCCCccccCCchhHHHHHHHHHHHHHHHhhcCCcCCCccchhhcCCCHHHHHHHHHHHHHHHHHHhc
Q 016945 75 YYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFK 154 (380)
Q Consensus 75 y~~~~~~~~~f~~rg~~~w~~~~r~~~~~~~~g~g~~~~~y~~~le~vP~TgR~rfills~~~E~~lg~~~y~qi~~~~~ 154 (380)
|+.+++.|+||+|++..+|++|+|++++++.+|+.++++||++|+|++|+|||+||+++|+++|+-||+.+|+++++|++
T Consensus 124 s~~~r~~~~sfkpn~~dk~f~n~rk~f~~lf~G~~~~~vfyfthlE~~Pit~Rsrfillskp~ekllge~~ye~im~eyq 203 (424)
T KOG2661|consen 124 SLMIRKWWQSFKPNKKDKVFENIRKNFWKLFLGLLLFVVFYFTHLEVSPITGRSRFILLSKPQEKLLGELEYEAIMEEYQ 203 (424)
T ss_pred HHHHHHHHHhcCCCCccchhhhHHHHHHHHHhhccceEEEEEeeeeeeccCCcceeeeccCHHHHHhhHHHHHHHHHHhc
Confidence 99999999999999999999999999999998875566799999999999999999999999999999999999999999
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHhcccccccccccCCCCccccccccchhhhhHHhhhhhccccccccCCccccccc
Q 016945 155 GKILPAIHPDSVRVRLIAKDIIEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEI 234 (380)
Q Consensus 155 ~~iLP~~hp~s~rVr~Ia~rIi~a~~~~l~~e~~~~~~gy~~~~~~~~~~~~~g~~~l~~l~~~~~~~~~~~~~~~~~~~ 234 (380)
+++||+.||++.+|++|.++||+++..
T Consensus 204 ~~mLp~~hp~sl~V~~vlk~iIea~~~----------------------------------------------------- 230 (424)
T KOG2661|consen 204 NDMLPEKHPRSLAVKEVLKHIIEANKD----------------------------------------------------- 230 (424)
T ss_pred CccCCcCCchhhHHHHHHHHHHHHhcc-----------------------------------------------------
Confidence 999999999999999999999998520
Q ss_pred cchHHHHHHhhhcccccccccccCCCCCCeEEEEEeCCCCcEeeeCCCeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhh
Q 016945 235 LDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVAR 314 (380)
Q Consensus 235 ~~D~~~~~~~~~g~~~~~~~~~s~~~~~~w~v~Vv~s~~~NAfalPgG~I~V~tGLL~~~~nddELAaVLaHEiaHv~~r 314 (380)
.+ .+++.+|+++||++|.+||||+|||+|||+||+|..|++||+||+|||||+||.++|
T Consensus 231 --------------------~~-slsgIkWeihVVndPipNAFvLPgGKvfVFtgiLn~ck~ddglAtvLgHE~aHaVar 289 (424)
T KOG2661|consen 231 --------------------VP-SLSGIKWEIHVVNDPIPNAFVLPGGKVFVFTGILNSCKDDDGLATVLGHEIAHAVAR 289 (424)
T ss_pred --------------------CC-cccCceeEEEEecCCCCceeeccCCeEEEEechhhcccChHHHHHHHHHHHHHHHHH
Confidence 11 257889999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHhccchhHH-HHHHHHhhhCCCchHHHH------HHHHHHCCCChHhhhhcc
Q 016945 315 HAAEGITKNLWFAILQLILYQFVMPDVV-NTMSTLFLRLPFSRKCVS------LFILSNSFWNLWACLLVF 378 (380)
Q Consensus 315 H~~e~~~~~~~~~il~~il~~~~~~d~~-~~~~~l~~~lpySR~~E~------l~~m~rAGYnP~a~~~~f 378 (380)
|++|.+++..+.++++.++..+..++.. +.+.+.++.+||||++|. +.+|++|||||.+...++
T Consensus 290 H~AEki~k~~~~siLgLvlyt~~~a~~~n~~Ll~~flrlPfSRKMEtEADyIGLlLma~Acfdpras~tvw 360 (424)
T KOG2661|consen 290 HAAEKIGKVHLLSILGLVLYTMIWAICPNDKLLEYFLRLPFSRKMETEADYIGLLLMAKACFDPRASSTVW 360 (424)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHhhccchHHHHHHHhcCcchhhhhhhhhHHHHHHHHHhhcCcccchHHH
Confidence 9999999999999999888766555443 377888999999999999 899999999999988764
No 2
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.95 E-value=1.3e-27 Score=243.51 Aligned_cols=176 Identities=26% Similarity=0.342 Sum_probs=138.9
Q ss_pred cCCCccchhhcCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCChh-hHHHHHHHHHHHHHHHhcccccccccccCCCCccc
Q 016945 121 TVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPD-SVRVRLIAKDIIEALQRGLKHETVWSDMGYASTET 199 (380)
Q Consensus 121 ~vP~TgR~rfills~~~E~~lg~~~y~qi~~~~~~~iLP~~hp~-s~rVr~Ia~rIi~a~~~~l~~e~~~~~~gy~~~~~ 199 (380)
..|.+|....-.+|+++|..+|...+.|+..+ ..+. .||+ ...|+.++.+|+++
T Consensus 32 ~lp~ig~~~~s~ls~~qev~~g~~~~~Qlr~~--~~~i--~D~el~~yv~~~g~rL~~~--------------------- 86 (484)
T COG4783 32 LLPDIGVSAGSTLSPAQEVALGDPANAQLRGS--VPLI--RDPELEEYVNSLGQRLAAA--------------------- 86 (484)
T ss_pred hcchhhhhhhhcCCHHHHHHhhHHHHHHhccC--CCCc--CCHHHHHHHHHHHHHHHHh---------------------
Confidence 45788999999999999999999988887765 2333 2455 44666666666654
Q ss_pred cccccchhhhhHHhhhhhccccccccCCccccccccchHHHHHHhhhcccccccccccCCCCCCeEEEEEeCCCCcEeee
Q 016945 200 DFVNEGRAARDTLRALSENSERGKTEGKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCL 279 (380)
Q Consensus 200 ~~~~~~~~g~~~l~~l~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g~~~~~~~~~s~~~~~~w~v~Vv~s~~~NAfal 279 (380)
+...+.+++|++|+|+.+||||+
T Consensus 87 ---------------------------------------------------------a~~~~~~f~f~lV~d~~iNAFA~ 109 (484)
T COG4783 87 ---------------------------------------------------------ADLVKTPFTFFLVNDDSINAFAT 109 (484)
T ss_pred ---------------------------------------------------------cCCCCCCeEEEEecCCccchhhc
Confidence 23456789999999999999999
Q ss_pred CCCeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhcHHHHHHHH------HHHHHHHHHHHhccchhH--HH----HHHH
Q 016945 280 PGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKN------LWFAILQLILYQFVMPDV--VN----TMST 347 (380)
Q Consensus 280 PgG~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH~~e~~~~~------~~~~il~~il~~~~~~d~--~~----~~~~ 347 (380)
|||+|+|+||||..++||+|||+||||||||+..||..+.+.+. .+.+++..++.+..+++. ++ ..+.
T Consensus 110 ~Gg~v~vntGLll~ae~esElagViAHEigHv~qrH~aR~~e~~~r~~~~~i~~ml~gi~aa~a~~~ag~a~iag~~a~~ 189 (484)
T COG4783 110 PGGYVVVNTGLLLTAENESELAGVIAHEIGHVAQRHLARSMEQQQRAAPMAIAGMLLGILAALAGADAGMAGIAGALAGA 189 (484)
T ss_pred CCceEEEehHHHHhcCCHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhchhHHHHHHHHHHHHHhCccccHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999874 344444444444333331 22 2223
Q ss_pred HhhhCCCchHHHH------HHHHHHCCCChHhhhhcc
Q 016945 348 LFLRLPFSRKCVS------LFILSNSFWNLWACLLVF 378 (380)
Q Consensus 348 l~~~lpySR~~E~------l~~m~rAGYnP~a~~~~f 378 (380)
....+.|||++|. +.+|.++||||.+|..||
T Consensus 190 ~~g~L~~sR~~E~eADr~Gi~~L~raGydp~gM~~ff 226 (484)
T COG4783 190 AQGQLNFSRQNEQEADRIGITTLVRAGYDPQGMPEFF 226 (484)
T ss_pred hhhhhhcchhhHHHHHHHHHHHHHHcCCCchhHHHHH
Confidence 3456789999999 999999999999999998
No 3
>COG4784 Putative Zn-dependent protease [General function prediction only]
Probab=99.93 E-value=4.8e-26 Score=223.94 Aligned_cols=179 Identities=21% Similarity=0.286 Sum_probs=141.2
Q ss_pred cCCcCCCccchhhcCCCHHHHHH-HHHHHHHHHHHHhcCCCCCCCChhhH-HHHHHHHHHHHHHHhcccccccccccCCC
Q 016945 118 NLETVPYTKRTHFVLLSKAVERQ-LGESQFQQMKAAFKGKILPAIHPDSV-RVRLIAKDIIEALQRGLKHETVWSDMGYA 195 (380)
Q Consensus 118 ~le~vP~TgR~rfills~~~E~~-lg~~~y~qi~~~~~~~iLP~~hp~s~-rVr~Ia~rIi~a~~~~l~~e~~~~~~gy~ 195 (380)
.|.-.|-|+..-+..+++.++.. ||.++-..|+++|++.- +||-.. .|.+|+.++..
T Consensus 21 ~~~~~Ps~~p~~v~~v~~n~~laqmgar~hprIla~yggeY---~D~Kler~Vari~g~lt~------------------ 79 (479)
T COG4784 21 ESGVQPSDNPQTVDNVQKNDPLAQMGARQHPRILATYGGEY---RDPKLERMVARIVGALTA------------------ 79 (479)
T ss_pred ccccCCCCCcchHHHhhccChHhHhhhhhChhHHHhcCCcc---CCHHHHHHHHHHHhHhhh------------------
Confidence 57778999999999999887665 99999999999998764 344433 44444443322
Q ss_pred CccccccccchhhhhHHhhhhhccccccccCCccccccccchHHHHHHhhhcccccccccccCCCCCCeEEEEEeCCCCc
Q 016945 196 STETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVIN 275 (380)
Q Consensus 196 ~~~~~~~~~~~~g~~~l~~l~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g~~~~~~~~~s~~~~~~w~v~Vv~s~~~N 275 (380)
.|+.++..|.|.|++||.+|
T Consensus 80 ------------------------------------------------------------~S~~p~q~YriTilnSP~IN 99 (479)
T COG4784 80 ------------------------------------------------------------VSENPQQTYRITILNSPNIN 99 (479)
T ss_pred ------------------------------------------------------------hccCCCceEEEEEecCCCcc
Confidence 23345778999999999999
Q ss_pred EeeeCCCeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHhccc----hhHHHHHHHHhhh
Q 016945 276 AFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQFVM----PDVVNTMSTLFLR 351 (380)
Q Consensus 276 AfalPgG~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH~~e~~~~~~~~~il~~il~~~~~----~d~~~~~~~l~~~ 351 (380)
||++|||++||+.|||..+.++.|||+||+|||||+.++|..++.++...-.+++.+.....+ ++.+...+.+ ..
T Consensus 100 AFALPGGYlYitRGLlAland~sEvAAVl~HEmgHVtAnHgi~rQ~~e~a~~ia~rvva~vl~~~~agk~A~~rGkl-rl 178 (479)
T COG4784 100 AFALPGGYLYITRGLLALANDSSEVAAVLAHEMGHVTANHGIQRQQREAAEVIASRVVAEVLGSDAAGKQALIRGKL-RL 178 (479)
T ss_pred ccccCCceEEEehhHHHHcCCHHHHHHHHHhhhhheecchhHHHHHHHHHHHHHHHHHHHHhCCcchhhHHHhhhhH-HH
Confidence 999999999999999999999999999999999999999999999987655555544333222 3333444444 45
Q ss_pred CCCchHHHH------HHHHHHCCCChHhhhhcc
Q 016945 352 LPFSRKCVS------LFILSNSFWNLWACLLVF 378 (380)
Q Consensus 352 lpySR~~E~------l~~m~rAGYnP~a~~~~f 378 (380)
..|||+||. ++++.+|||||.|++.|.
T Consensus 179 a~fsRnqELqAD~iG~~~lgeAGYDP~A~~rfl 211 (479)
T COG4784 179 AQFSRNQELQADAIGIKMLGEAGYDPYAAARFL 211 (479)
T ss_pred hhhccchhhhhhhhhHHHHHhcCCChHHHHHHH
Confidence 799999999 899999999999999874
No 4
>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification. ; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.
Probab=99.73 E-value=6.5e-18 Score=155.03 Aligned_cols=137 Identities=26% Similarity=0.381 Sum_probs=86.4
Q ss_pred cchHHHHHHhhhcccccccccccCCCCCCeEEEEEeCCCCcEeeeCCCe---EEEcHhHHhcCCCHHHHHHHHHHHHHHH
Q 016945 235 LDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGK---IVVFTGLLEHFRTDAEIATIIGHEVAHA 311 (380)
Q Consensus 235 ~~D~~~~~~~~~g~~~~~~~~~s~~~~~~w~v~Vv~s~~~NAfalPgG~---I~V~tGLL~~~~nddELAaVLaHEiaHv 311 (380)
.+++++++.++.. ....+.....++++|++++.+|||++|+|. |+|++||++.+ |+|||++|||||+||+
T Consensus 28 ~~~~~L~~~v~~l------~~~~~~~~~~~~v~v~~~~~~NA~~~g~~~~~~I~v~~~ll~~~-~~~el~aVlaHElgH~ 100 (226)
T PF01435_consen 28 LEDPELRRIVEEL------ARRAGLGIPPPRVYVIDSPSPNAFATGGGPRKRIVVTSGLLESL-SEDELAAVLAHELGHI 100 (226)
T ss_dssp -HHHHHHHHHHHH------HHHHHCTSS--EEEEE--SSEEEEEETTTC--EEEEEHHHHHHS-SHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH------HHHhcCCCCCCeEEEEcCCCCcEEEEccCCCcEEEEeChhhhcc-cHHHHHHHHHHHHHHH
Confidence 4566676665521 111122345589999999999999999999 99999999665 9999999999999999
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHHhccch--h---HH------H---HHHHHhhhCCCchHHHH------HHH------HH
Q 016945 312 VARHAAEGITKNLWFAILQLILYQFVMP--D---VV------N---TMSTLFLRLPFSRKCVS------LFI------LS 365 (380)
Q Consensus 312 ~~rH~~e~~~~~~~~~il~~il~~~~~~--d---~~------~---~~~~l~~~lpySR~~E~------l~~------m~ 365 (380)
..+|....+....+..++..++...... . .. . ..........+||.+|. +.+ |.
T Consensus 101 ~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~E~~AD~~a~~~~~~~~~l~ 180 (226)
T PF01435_consen 101 KHRHILKSLLISLLLSILFFALLALLIGSMSLFSAFGFIDILGILIAFLFQLLTNAFSRRQEYEADRYAARLGGDPALLA 180 (226)
T ss_dssp HTTHCCCCCCHHH-HHHHHHHHHT-----HHHHHHHH----------HHSTT------HHHHHHHHHHHHHH------HH
T ss_pred HcCCcchHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccchhhHHHHHHHhhcchhHHHHHHHHHHHHHhcCCcHHHH
Confidence 9999988865555444333222111100 0 00 0 02334577899999999 777 99
Q ss_pred HCCCChHhhhhcc
Q 016945 366 NSFWNLWACLLVF 378 (380)
Q Consensus 366 rAGYnP~a~~~~f 378 (380)
++||+|.++..+|
T Consensus 181 ~a~~~~~~~~~~l 193 (226)
T PF01435_consen 181 RALYKPAAAISAL 193 (226)
T ss_dssp HTTS-TTHHHHHH
T ss_pred HhCCCHHHHHHHH
Confidence 9999999987654
No 5
>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.4e-16 Score=152.94 Aligned_cols=99 Identities=32% Similarity=0.415 Sum_probs=72.4
Q ss_pred CCCeEEEEEeCCCCcEeeeCC----CeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHH-HHHH----
Q 016945 261 GLNWEVLVVNEPVINAFCLPG----GKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFA-ILQL---- 331 (380)
Q Consensus 261 ~~~w~v~Vv~s~~~NAfalPg----G~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH~~e~~~~~~~~~-il~~---- 331 (380)
+..|+++|++++.+||||+|+ |.|+||+||++.+ |||||++|||||+||+..||+..++.-..+.. +...
T Consensus 115 ~~~~~v~i~~~~~~NAFa~g~~~~~~~V~vt~gLl~~l-~~dEl~aVlaHElgHi~~rd~~~~~~~~~~~~~~~~~~~~~ 193 (302)
T COG0501 115 PHMPEVYILETPQPNAFALGGGPKNGRVVVTTGLLDLL-NDDELEAVLAHELGHIKNRHTLVRLTLRGLLASAFVLLATL 193 (302)
T ss_pred CCCCeeEEecCCCccceecCCCCCCeeEEecHHHHhhC-CHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 447999999999999999998 8999999999966 99999999999999999999998655433222 1111
Q ss_pred HHHhc------cch----hHHHHHHHHhhhCCCchHHHH
Q 016945 332 ILYQF------VMP----DVVNTMSTLFLRLPFSRKCVS 360 (380)
Q Consensus 332 il~~~------~~~----d~~~~~~~l~~~lpySR~~E~ 360 (380)
++... ... .........++.++|||.+|.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SR~~E~ 232 (302)
T COG0501 194 ALAAGLLGEAALALLLLLLLLALFLATLLVLAFSRKREY 232 (302)
T ss_pred HHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 11100 000 111122344678999999999
No 6
>PRK03982 heat shock protein HtpX; Provisional
Probab=99.61 E-value=4.5e-15 Score=144.65 Aligned_cols=114 Identities=17% Similarity=0.155 Sum_probs=80.3
Q ss_pred eEEEEEeCCCCcEeee---C-CCeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHH------
Q 016945 264 WEVLVVNEPVINAFCL---P-GGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLIL------ 333 (380)
Q Consensus 264 w~v~Vv~s~~~NAfal---P-gG~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH~~e~~~~~~~~~il~~il------ 333 (380)
.+++|++++.+|||++ | +|.|+|++||++.+ |+|||++|||||+||+.++|...++..+.+..++..+.
T Consensus 86 p~v~v~~~~~~NAfa~G~~~~~~~V~vt~gLl~~l-~~~El~AVlAHElgHi~~~h~~~~~~~~~~~~~~~~l~~~~~~~ 164 (288)
T PRK03982 86 PKVAIVPTQTPNAFATGRDPKHAVVAVTEGILNLL-NEDELEGVIAHELTHIKNRDTLIQTIAATLAGAIMYLAQWLSWG 164 (288)
T ss_pred CeEEEEeCCCcceEEeccCCCCeEEEeehHHHhhC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999 4 56899999999999 99999999999999999999988876654332221110
Q ss_pred --Hhccc------hhHHH--------HHHHHhhhCCCchHHHH-HH-HHHHCCCChHhhhhcc
Q 016945 334 --YQFVM------PDVVN--------TMSTLFLRLPFSRKCVS-LF-ILSNSFWNLWACLLVF 378 (380)
Q Consensus 334 --~~~~~------~d~~~--------~~~~l~~~lpySR~~E~-l~-~m~rAGYnP~a~~~~f 378 (380)
..... +...+ .+...++.+.|||++|. .+ +-.+.++||.+++..+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~SR~~E~~AD~~A~~~~~~p~~l~~aL 227 (288)
T PRK03982 165 LWFGGGGRDDRNGGNPIGSLLLIILAPIAATLIQFAISRQREFSADEGGARLTGNPLALANAL 227 (288)
T ss_pred HHhcccCccccccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHhCCHHHHHHHH
Confidence 00000 11111 11233456789999999 33 3445678999887765
No 7
>PRK02870 heat shock protein HtpX; Provisional
Probab=99.61 E-value=3e-14 Score=142.31 Aligned_cols=115 Identities=19% Similarity=0.246 Sum_probs=79.0
Q ss_pred CeEEEEEeCCCCcEeee----CCCeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHH----HH
Q 016945 263 NWEVLVVNEPVINAFCL----PGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLI----LY 334 (380)
Q Consensus 263 ~w~v~Vv~s~~~NAfal----PgG~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH~~e~~~~~~~~~il~~i----l~ 334 (380)
.++|++++++.+||||+ |++.|+|++||++.+ |+|||++|||||+||+.++|.........+..++..+ +.
T Consensus 133 ~p~V~vi~~~~~NAFA~G~~~~~~~Ivvt~GLL~~L-~~dEL~aVlAHELgHik~~di~~~~~~~~l~~~~~~~~~~~~~ 211 (336)
T PRK02870 133 MPKVYIIDAPYMNAFASGYSEKSAMVAITTGLLEKL-DRDELQAVMAHELSHIRHGDIRLTLCVGVLSNIMLIVADFLFY 211 (336)
T ss_pred CCeEEEEcCCCCceEEecCCCCCcEEEEehHHhhhC-CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999 578999999999998 9999999999999999999986654443332221111 11
Q ss_pred hc-cc----hh---HH--------HHHHHHhhhCCCchHHHH-H-HHHHHCCCChHhhhhcc
Q 016945 335 QF-VM----PD---VV--------NTMSTLFLRLPFSRKCVS-L-FILSNSFWNLWACLLVF 378 (380)
Q Consensus 335 ~~-~~----~d---~~--------~~~~~l~~~lpySR~~E~-l-~~m~rAGYnP~a~~~~f 378 (380)
.+ .. .+ .. ..+...++.+.+||..|. . ..-++-..||.+++..+
T Consensus 212 ~~~g~~~~~~~~~~~~~~l~l~~~~~~~~~ll~~~iSR~rEy~AD~~Aa~ltg~p~aLasAL 273 (336)
T PRK02870 212 SFMGNRRNSGANRARMIILILRYVLPILTVLLMLFLSRTREYMADAGAVELMRDNEPMARAL 273 (336)
T ss_pred HHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHH
Confidence 01 10 01 00 111234567889999999 2 22444455888877654
No 8
>PRK01345 heat shock protein HtpX; Provisional
Probab=99.60 E-value=5.9e-15 Score=146.17 Aligned_cols=114 Identities=19% Similarity=0.242 Sum_probs=78.1
Q ss_pred eEEEEEeCCCCcEeeeC----CCeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHH---Hhc
Q 016945 264 WEVLVVNEPVINAFCLP----GGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLIL---YQF 336 (380)
Q Consensus 264 w~v~Vv~s~~~NAfalP----gG~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH~~e~~~~~~~~~il~~il---~~~ 336 (380)
.+|+|++++.+|||+++ ++.|+|++|||+.+ |+|||++||||||||+.++|.........+..++..+. ...
T Consensus 85 p~v~vid~~~~NAFa~G~~~~~~~V~vt~gLL~~L-~~dEL~aVlAHElgHi~~~d~~~~~l~~~~~~~~~~l~~~~~~~ 163 (317)
T PRK01345 85 PKVYIIDNPQPNAFATGRNPENAAVAATTGLLQRL-SPEEVAGVMAHELAHVKNRDTLTMTITATLAGAISMLANFAFFF 163 (317)
T ss_pred CcEEEEcCCCcceEEecCCCCCeEEEechHHHhhC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47999999999999995 34799999999998 89999999999999999999987665444332222111 000
Q ss_pred cc---------hhH-------HHHHHHHhhhCCCchHHHH-HHHH-HHCCCChHhhhhcc
Q 016945 337 VM---------PDV-------VNTMSTLFLRLPFSRKCVS-LFIL-SNSFWNLWACLLVF 378 (380)
Q Consensus 337 ~~---------~d~-------~~~~~~l~~~lpySR~~E~-l~~m-~rAGYnP~a~~~~f 378 (380)
.. ..+ ...+...++.+.|||++|. .+.. .+...||.+++.+|
T Consensus 164 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~SR~rE~~AD~~A~~ltg~p~~L~~AL 223 (317)
T PRK01345 164 GGNRENNNGPLGLVGTLAAMIVAPLAAMLVQMAISRTREYAADRRGAEICGNPLWLASAL 223 (317)
T ss_pred cCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 00 001 0111233567789999999 2222 23335999888765
No 9
>PRK03001 M48 family peptidase; Provisional
Probab=99.55 E-value=4.6e-14 Score=137.22 Aligned_cols=114 Identities=17% Similarity=0.162 Sum_probs=80.0
Q ss_pred eEEEEEeCCCCcEeeeCC----CeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHH-----H
Q 016945 264 WEVLVVNEPVINAFCLPG----GKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLIL-----Y 334 (380)
Q Consensus 264 w~v~Vv~s~~~NAfalPg----G~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH~~e~~~~~~~~~il~~il-----~ 334 (380)
-+++|++++.+|||+++. +.|+|++||++.+ |+|||++|||||+||+.++|....+..+....++..+. .
T Consensus 85 p~v~v~~~~~~NAfa~G~~~~~~~Ivvt~gLl~~l-~~~El~aVlAHElgHi~~~h~~~~~~~~~~~~~~~~~~~~~~~~ 163 (283)
T PRK03001 85 PKVYLINEDQPNAFATGRNPEHAAVAATTGILRVL-SEREIRGVMAHELAHVKHRDILISTISATMAGAISALANFAMFF 163 (283)
T ss_pred CeEEEecCCCcceEEecCCCCCeEEEecHHHHhhC-CHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 379999999999999964 3699999999988 99999999999999999999988765543333322211 0
Q ss_pred hc-cc--h--h-H-------HHHHHHHhhhCCCchHHHH-HHH-HHHCCCChHhhhhcc
Q 016945 335 QF-VM--P--D-V-------VNTMSTLFLRLPFSRKCVS-LFI-LSNSFWNLWACLLVF 378 (380)
Q Consensus 335 ~~-~~--~--d-~-------~~~~~~l~~~lpySR~~E~-l~~-m~rAGYnP~a~~~~f 378 (380)
+. .. . + . ...+...++.+-|||++|. .+- -.+.++||.++++++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SR~~E~~AD~~a~~l~~~p~~l~~AL 222 (283)
T PRK03001 164 GGRDENGRPVNPIAGIAVAILAPLAASLIQMAISRAREFEADRGGARISGDPQALASAL 222 (283)
T ss_pred cCCCccccccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHhCCHHHHHHHH
Confidence 10 00 0 1 1 0111233456789999999 332 345578999988765
No 10
>PRK03072 heat shock protein HtpX; Provisional
Probab=99.52 E-value=9.8e-14 Score=135.69 Aligned_cols=134 Identities=13% Similarity=0.148 Sum_probs=86.7
Q ss_pred chHHHHHHhhhcccccccccccCCCCCCeEEEEEeCCCCcEeeeC---C-CeEEEcHhHHhcCCCHHHHHHHHHHHHHHH
Q 016945 236 DDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLP---G-GKIVVFTGLLEHFRTDAEIATIIGHEVAHA 311 (380)
Q Consensus 236 ~D~~~~~~~~~g~~~~~~~~~s~~~~~~w~v~Vv~s~~~NAfalP---g-G~I~V~tGLL~~~~nddELAaVLaHEiaHv 311 (380)
+||++.+.++. ++...+.+ ..+++|++++.+|||++. + +.|+|++||++.+ |+|||++|||||+||+
T Consensus 68 ~~p~L~~~v~~------la~~~g~p--~p~vyv~~~~~~NAFa~G~~~~~~~v~vt~gLl~~l-~~~El~aVlAHElgHi 138 (288)
T PRK03072 68 QAPAMYRIVRE------LSTAARQP--MPRLYISPTAAPNAFATGRNPRNAAVCCTEGILQIL-NERELRGVLGHELSHV 138 (288)
T ss_pred hhHHHHHHHHH------HHHHcCCC--CCCEEEecCCCCceEEecCCCCCcEEEecHHHHHhC-CHHHHHHHHHHHHHHH
Confidence 45666665542 12222232 347999999999999984 2 3599999999999 9999999999999999
Q ss_pred hhhcHHHHHHHHHHHHHHHHHH------Hhccc------hhHH--------HHHHHHhhhCCCchHHHH-HH-HHHHCCC
Q 016945 312 VARHAAEGITKNLWFAILQLIL------YQFVM------PDVV--------NTMSTLFLRLPFSRKCVS-LF-ILSNSFW 369 (380)
Q Consensus 312 ~~rH~~e~~~~~~~~~il~~il------~~~~~------~d~~--------~~~~~l~~~lpySR~~E~-l~-~m~rAGY 369 (380)
..+|.........+..++..+. ..+.. +... ..+...++.+.|||.+|. .+ +-++.+.
T Consensus 139 ~~~d~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SR~rE~~AD~~A~~l~~ 218 (288)
T PRK03072 139 YNRDILISSVAGALASVITYLANMAMFAGMFGGRRDNDGPNPLALLLVSLLGPIAATVIQLAISRSREYQADESGAELTG 218 (288)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHhC
Confidence 9999988765543332222110 10000 1111 111233456789999999 32 2334457
Q ss_pred ChHhhhhcc
Q 016945 370 NLWACLLVF 378 (380)
Q Consensus 370 nP~a~~~~f 378 (380)
||.+++.++
T Consensus 219 ~p~~La~AL 227 (288)
T PRK03072 219 DPLALASAL 227 (288)
T ss_pred CHHHHHHHH
Confidence 999988765
No 11
>PRK04897 heat shock protein HtpX; Provisional
Probab=99.49 E-value=2.7e-13 Score=133.07 Aligned_cols=114 Identities=19% Similarity=0.242 Sum_probs=78.3
Q ss_pred eEEEEEeCCCCcEeeeC----CCeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHH---H---
Q 016945 264 WEVLVVNEPVINAFCLP----GGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLI---L--- 333 (380)
Q Consensus 264 w~v~Vv~s~~~NAfalP----gG~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH~~e~~~~~~~~~il~~i---l--- 333 (380)
-++++++++.+|||+++ ++.|+|++||++.+ |+|||++|||||+||+.++|.........+..++..+ +
T Consensus 98 p~v~v~~~~~~NAfa~G~~~~~~~v~vt~gLl~~l-~~~El~aVlAHElgHi~~~d~~~~~~~~~~~~~~~~l~~~~~~~ 176 (298)
T PRK04897 98 PRVFIIDDPSPNAFATGSSPKNAAVAVTTGLLAIM-NREELEGVIGHEISHIRNYDIRLSTIAVALASAITLLSDIAGRM 176 (298)
T ss_pred CcEEEecCCCCceEEeccCCCCcEEEeehHHHhhC-CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999996 35799999999999 9999999999999999999997765443322221111 0
Q ss_pred --Hhcc-c----hh------H----H-------HHHHHHhhhCCCchHHHH-H-HHHHHCCCChHhhhhcc
Q 016945 334 --YQFV-M----PD------V----V-------NTMSTLFLRLPFSRKCVS-L-FILSNSFWNLWACLLVF 378 (380)
Q Consensus 334 --~~~~-~----~d------~----~-------~~~~~l~~~lpySR~~E~-l-~~m~rAGYnP~a~~~~f 378 (380)
.... . .+ + . ..+...++.+.+||.+|. . ..-.+.++||.+++..+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ll~~~~SR~rE~~AD~~A~~lt~~p~~La~AL 247 (298)
T PRK04897 177 MWWGGGSRRRDDDRDGGGLQIILLIVSLLLLILAPLAATLIQLAISRQREYLADASSVELTRNPQGLISAL 247 (298)
T ss_pred HHhcccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 0000 0 00 0 0 011223356789999999 2 23555668888877654
No 12
>PRK05457 heat shock protein HtpX; Provisional
Probab=99.40 E-value=2.7e-12 Score=125.53 Aligned_cols=57 Identities=28% Similarity=0.438 Sum_probs=50.9
Q ss_pred CeEEEEEeCCCCcEeeeCC----CeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhcHHHHH
Q 016945 263 NWEVLVVNEPVINAFCLPG----GKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGI 320 (380)
Q Consensus 263 ~w~v~Vv~s~~~NAfalPg----G~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH~~e~~ 320 (380)
.-+++|++++.+|||+++. +.|+|++||++.+ |+|||++|||||+||+.++|.....
T Consensus 94 ~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~gLl~~L-~~~El~aVlAHElgHi~~~d~~~~~ 154 (284)
T PRK05457 94 MPEVAIYHSPEINAFATGASKNNSLVAVSTGLLQNM-SRDEVEAVLAHEISHIANGDMVTMT 154 (284)
T ss_pred CCCEEEEeCCCceEEEecCCCCCeEEEeehHHhhhC-CHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3468999999999999973 4699999999999 9999999999999999999987753
No 13
>PRK02391 heat shock protein HtpX; Provisional
Probab=99.39 E-value=3.2e-12 Score=125.72 Aligned_cols=59 Identities=27% Similarity=0.381 Sum_probs=52.0
Q ss_pred eEEEEEeCCCCcEeeeC----CCeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhcHHHHHHHH
Q 016945 264 WEVLVVNEPVINAFCLP----GGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKN 323 (380)
Q Consensus 264 w~v~Vv~s~~~NAfalP----gG~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH~~e~~~~~ 323 (380)
-++++++++.+|||+++ ++.|+|++||++.+ |+|||++|||||+||+.++|......-.
T Consensus 94 p~v~v~~~~~~NAfa~G~~~~~~~V~vt~gLl~~L-~~~El~aVlaHElgHi~~~di~~~~i~~ 156 (296)
T PRK02391 94 PRVAVADSDVPNAFATGRSPKNAVVCVTTGLMRRL-DPDELEAVLAHELSHVKNRDVAVMTIAS 156 (296)
T ss_pred CcEEEEeCCCCceEEecCCCCCcEEEecHHHHhhC-CHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 37999999999999995 34699999999999 8999999999999999999988765443
No 14
>PRK01265 heat shock protein HtpX; Provisional
Probab=99.36 E-value=5.5e-12 Score=125.60 Aligned_cols=60 Identities=27% Similarity=0.377 Sum_probs=53.6
Q ss_pred CeEEEEEeCCCCcEeeeC----CCeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhcHHHHHHHH
Q 016945 263 NWEVLVVNEPVINAFCLP----GGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKN 323 (380)
Q Consensus 263 ~w~v~Vv~s~~~NAfalP----gG~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH~~e~~~~~ 323 (380)
..++++++++.+||||+. ++.|+|++||++.+ |+|||++|||||+||+.++|....+.-+
T Consensus 100 ~p~vyv~~~~~~NAfa~G~~~~~~~Ivvt~gLl~~l-~~~El~aVlAHElgHik~~d~~~~~~~~ 163 (324)
T PRK01265 100 VPKVYIADVPFPNAFAYGSPIAGKRIAITLPLLKIL-NRDEIKAVAGHELGHLKHRDVELLMAIG 163 (324)
T ss_pred CCeEEEecCCCCCeEEeccCCCCCEEEEehHHHhhC-CHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 358999999999999963 57899999999999 9999999999999999999998876544
No 15
>KOG2719 consensus Metalloprotease [General function prediction only]
Probab=98.13 E-value=1.7e-05 Score=81.68 Aligned_cols=107 Identities=20% Similarity=0.283 Sum_probs=72.6
Q ss_pred EEEEEeC----CCCcEeeeC---CCeEEEcHhHHh-cC-CCHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHh
Q 016945 265 EVLVVNE----PVINAFCLP---GGKIVVFTGLLE-HF-RTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQ 335 (380)
Q Consensus 265 ~v~Vv~s----~~~NAfalP---gG~I~V~tGLL~-~~-~nddELAaVLaHEiaHv~~rH~~e~~~~~~~~~il~~il~~ 335 (380)
.++|++. .-.||+-.+ .-.|++|.-|+. .. -|+||+++|+|||+||...+|..++..-..+..++...+.+
T Consensus 236 k~~vi~~s~rs~hsNAyfyG~~~~KRIvIyDtLl~~~~~~~~eel~AVl~HELGHW~~~H~~K~~ii~~~~l~l~~llF~ 315 (428)
T KOG2719|consen 236 KYRVIDGSKRSSHSNAYFYGLCKNKRIVIYDTLLLEEEHLNNEELVAVLAHELGHWKLNHVLKNIIIMQIHLFLEFLLFG 315 (428)
T ss_pred EEEEEecCCCCCCCCeeeeeccccceEEEehhhhhhhhccccHHHHHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4677772 248999986 359999999993 33 38999999999999999999999998876544333222211
Q ss_pred -----------ccc----hhHHH-------------HHHHHhhhCCCchHHHH--HHHHHHCCCChH
Q 016945 336 -----------FVM----PDVVN-------------TMSTLFLRLPFSRKCVS--LFILSNSFWNLW 372 (380)
Q Consensus 336 -----------~~~----~d~~~-------------~~~~l~~~lpySR~~E~--l~~m~rAGYnP~ 372 (380)
++. |..++ .+.+ ....-.||..|. =.+..+-||+-.
T Consensus 316 ~~~~~~~ly~a~Gf~~~~P~~ig~livf~~~l~py~~l~~-~~~n~~sR~fEyqAD~fA~klGYg~~ 381 (428)
T KOG2719|consen 316 FLYRNPKLYAAFGFIDEQPSLIGFLIVFQFVLAPYRALLN-FLMNLISRRFEYQADAFAKKLGYGKD 381 (428)
T ss_pred HHHcCcchheeecCCCCCcchhHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCchh
Confidence 111 12222 1122 345678999999 456677888754
No 16
>PF13203 DUF2201_N: Putative metallopeptidase domain
Probab=96.74 E-value=0.0026 Score=62.07 Aligned_cols=55 Identities=22% Similarity=0.241 Sum_probs=48.9
Q ss_pred EEEEeCCCCcEeeeCCCeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhcHHHHHH
Q 016945 266 VLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGIT 321 (380)
Q Consensus 266 v~Vv~s~~~NAfalPgG~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH~~e~~~ 321 (380)
+.++.++.+..+++.|..|+++-..+..+ +.+|+.+||+||+-|++.+|..+...
T Consensus 27 l~~~~~~~~~t~~tDg~~l~~nP~~~~~l-~~~~~~~~l~HevlH~~~~H~~r~~~ 81 (292)
T PF13203_consen 27 LPPVEDDGIPTAATDGRRLYYNPEFLESL-SPEERVGLLLHEVLHCLLRHPWRRGG 81 (292)
T ss_pred CeeeeCCCCceeeEcCcEEEECcHHHhcC-CHHHHHHHHHHHHHHHHccchhhhcc
Confidence 34445777889999999999999999888 89999999999999999999988877
No 17
>PF05569 Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR008756 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M56 (clan M-). The predicted active site residues for members of this family occur in the motif HEXXH. The type example is BlaR1 peptidase from Bacillus licheniformis. Production of beta-Lactamase and penicillin-binding protein 2a (which mediate staphylococcal resistance to beta-lactam antibiotics) is regulated by a signal-transducing integral membrane protein and a transcriptional repressor. The signal transducer is a fusion protein with penicillin-binding and zinc metalloprotease domains. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription.
Probab=96.47 E-value=0.0074 Score=58.87 Aligned_cols=59 Identities=24% Similarity=0.294 Sum_probs=47.2
Q ss_pred EEEEEeCCC-CcEeeeC--CCeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 016945 265 EVLVVNEPV-INAFCLP--GGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNL 324 (380)
Q Consensus 265 ~v~Vv~s~~-~NAfalP--gG~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH~~e~~~~~~ 324 (380)
.+.+..++. ...|+++ -.+|++..++++.+ +++|+..||.||++|+..+|....+-...
T Consensus 159 ~~~i~~s~~i~sP~~~G~~~p~I~lP~~~~~~~-~~~el~~il~HEl~Hikr~D~~~~~l~~l 220 (299)
T PF05569_consen 159 PIRIRVSSGISSPFVFGFLRPVIVLPESLLEDL-SEEELRAILLHELAHIKRRDLLWKLLAEL 220 (299)
T ss_pred ceEEEEcCCCCCCeeecCcceEEEecCcccccc-CHHHHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 345555554 4667763 27999999999888 99999999999999999999988766554
No 18
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function. A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.
Probab=95.21 E-value=0.059 Score=43.84 Aligned_cols=51 Identities=18% Similarity=0.321 Sum_probs=33.7
Q ss_pred eEEEEEeCCC--CcEeeeC---CCeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhcHHHH
Q 016945 264 WEVLVVNEPV--INAFCLP---GGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEG 319 (380)
Q Consensus 264 w~v~Vv~s~~--~NAfalP---gG~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH~~e~ 319 (380)
.+|...+... ...++.+ .+.|+|++. .++.+-..+|+||+||+..+|....
T Consensus 6 i~v~~~~~~~~~~~~~~~~~~~~~~I~in~~-----~~~~~~~f~laHELgH~~~~~~~~~ 61 (122)
T PF06114_consen 6 IDVVYTDLGPKDLGGFSIPKENNPIIFINSN-----LSPERQRFTLAHELGHILLHHGDET 61 (122)
T ss_dssp -EEEEE--TT--EEEETT----TTEEEEESS-----S-HHHHHHHHHHHHHHHHHHH-HHH
T ss_pred EEEEEEcCCCCCcCEEEEecCcCCEEEECCC-----CCHHHHHHHHHHHHHHHHhhhcccc
Confidence 3455555433 3344443 578888887 3788999999999999999999865
No 19
>PF04228 Zn_peptidase: Putative neutral zinc metallopeptidase; InterPro: IPR007343 Members of this family of bacterial proteins are described as hypothetical proteins or zinc metallopeptidases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=94.56 E-value=0.036 Score=55.10 Aligned_cols=44 Identities=20% Similarity=0.326 Sum_probs=34.2
Q ss_pred CCcEeeeC-CCeEEEcHhHHhcCC------CHHHHHHHHHHHHHHHhhhcH
Q 016945 273 VINAFCLP-GGKIVVFTGLLEHFR------TDAEIATIIGHEVAHAVARHA 316 (380)
Q Consensus 273 ~~NAfalP-gG~I~V~tGLL~~~~------nddELAaVLaHEiaHv~~rH~ 316 (380)
..|||=.| +.+||+-..+++.+. .+-..+.|||||.||.++...
T Consensus 136 ~~gpFYCp~D~tIYlD~~f~~~L~~~~ga~G~~a~ayVlAHEyGHHVQ~l~ 186 (292)
T PF04228_consen 136 ATGPFYCPADQTIYLDLSFFDELQQRFGASGDFAQAYVLAHEYGHHVQNLL 186 (292)
T ss_pred CCCCEeCCCCCEEEechHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHh
Confidence 45777666 579999998876553 244568899999999999886
No 20
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=92.52 E-value=0.086 Score=42.62 Aligned_cols=39 Identities=28% Similarity=0.391 Sum_probs=28.3
Q ss_pred CCcEeeeCCCeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhh
Q 016945 273 VINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVAR 314 (380)
Q Consensus 273 ~~NAfalPgG~I~V~tGLL~~~~nddELAaVLaHEiaHv~~r 314 (380)
...||+. |+.|++-.|=...- ..+=..+|+||++|+++.
T Consensus 37 ~A~A~T~-G~~I~f~~g~~~~~--s~~~~~llaHEl~Hv~Qq 75 (79)
T PF13699_consen 37 GARAFTV-GNDIYFAPGKYNPD--SPEGRALLAHELAHVVQQ 75 (79)
T ss_pred CCeEEEE-CCEEEEcCCCcCCC--CCCcchhHhHHHHHHHhh
Confidence 4678887 78999977765422 223457899999999864
No 21
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=90.97 E-value=0.58 Score=41.15 Aligned_cols=33 Identities=30% Similarity=0.379 Sum_probs=29.8
Q ss_pred eEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhcH
Q 016945 283 KIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHA 316 (380)
Q Consensus 283 ~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH~ 316 (380)
.|.++.-+++. .+++++..+|.|||+|+...+.
T Consensus 44 ~I~ls~~~~~~-~~~~~~~~tL~HEm~H~~~~~~ 76 (157)
T PF10263_consen 44 EIRLSPKLLDR-NPEEELIDTLLHEMAHAAAYVF 76 (157)
T ss_pred EEEECHHHHHh-hHHHHHHHHHHHHHHHHHhhhc
Confidence 79999999997 4899999999999999998655
No 22
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=90.89 E-value=0.32 Score=43.10 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=29.6
Q ss_pred CCeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhh
Q 016945 281 GGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVAR 314 (380)
Q Consensus 281 gG~I~V~tGLL~~~~nddELAaVLaHEiaHv~~r 314 (380)
.+.|.++.-|++.. .+++|..||.|||+|....
T Consensus 41 ~~~I~ln~~l~~~~-~~~~l~~~l~HEm~H~~~~ 73 (146)
T smart00731 41 SAEIRLNPKLLTEN-GRDRLRETLLHELCHAALY 73 (146)
T ss_pred CCEEEeCHHHHhhc-cHHHHHhhHHHHHHHHHHH
Confidence 68999999998866 7899999999999999985
No 23
>COG4219 MecR1 Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component [Transcription / Signal transduction mechanisms]
Probab=89.17 E-value=1.1 Score=45.34 Aligned_cols=47 Identities=30% Similarity=0.313 Sum_probs=40.4
Q ss_pred CcEeeeCCCeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhcHHHHHH
Q 016945 274 INAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGIT 321 (380)
Q Consensus 274 ~NAfalPgG~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH~~e~~~ 321 (380)
|=-|-++-..|++-+.+.+.+ +++|+..|++||.+|+..++.....-
T Consensus 165 P~v~gl~kp~IvlP~d~~~r~-~~ee~~yIilHEl~Hlk~gD~i~n~i 211 (337)
T COG4219 165 PMVFGLVKPCIVLPADFVERL-TDEELKYIILHELSHLKRGDAIINLI 211 (337)
T ss_pred ceeeccCcceEEccHHHHhhc-CHHhhhhhHhHHHhhhhcccHHHHHH
Confidence 445556668999999999999 99999999999999999999876543
No 24
>PRK04351 hypothetical protein; Provisional
Probab=88.98 E-value=0.64 Score=41.98 Aligned_cols=36 Identities=28% Similarity=0.369 Sum_probs=29.8
Q ss_pred EeeeCCCeEEEcHhHHhcCCCHHHHHHHHHHHHHHHh
Q 016945 276 AFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAV 312 (380)
Q Consensus 276 AfalPgG~I~V~tGLL~~~~nddELAaVLaHEiaHv~ 312 (380)
++-+....|-++.-+++.. .+++|..||.|||+|..
T Consensus 38 ~~~l~~~~I~lnp~ll~~~-~~~~l~~vv~HElcH~~ 73 (149)
T PRK04351 38 RYLLKDHHIEFNPKMLEEY-GLEELIGIIKHELCHYH 73 (149)
T ss_pred eeecCCCeEEeCHHHHhhc-cHHHHHhhHHHHHHHHH
Confidence 3335567899999998865 79999999999999974
No 25
>COG2321 Predicted metalloprotease [General function prediction only]
Probab=88.56 E-value=0.37 Score=47.72 Aligned_cols=40 Identities=28% Similarity=0.443 Sum_probs=32.1
Q ss_pred EeeeCC-CeEEEcHhHHhcCC------CHHHHHHHHHHHHHHHhhhc
Q 016945 276 AFCLPG-GKIVVFTGLLEHFR------TDAEIATIIGHEVAHAVARH 315 (380)
Q Consensus 276 AfalPg-G~I~V~tGLL~~~~------nddELAaVLaHEiaHv~~rH 315 (380)
-|-.|+ .++|+...+++.|+ .|=.-|.|+|||++|++++=
T Consensus 136 PFYCP~D~kvYlDlsFf~~m~~~fga~GdfAqaYViAHEVGHHVQnl 182 (295)
T COG2321 136 PFYCPADTKVYLDLSFFDEMKTKFGASGDFAQAYVIAHEVGHHVQNL 182 (295)
T ss_pred CeecCCCceEEEehhHHHHHHHHhcCCccHHHHHHHHhhhhHHHHHH
Confidence 345564 89999999999875 45667899999999998763
No 26
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function.
Probab=87.48 E-value=1.1 Score=41.58 Aligned_cols=34 Identities=26% Similarity=0.364 Sum_probs=27.2
Q ss_pred CeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhcHH
Q 016945 282 GKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAA 317 (380)
Q Consensus 282 G~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH~~ 317 (380)
|+|+++- +..-.+.++|.++||||.-|+..-...
T Consensus 49 ~~i~l~~--~~~~~~~~~l~~~iaHE~hH~~r~~~~ 82 (195)
T PF10026_consen 49 GYIFLFL--LPNDYSLEELPALIAHEYHHNCRYEQI 82 (195)
T ss_pred CEEEEEe--cCCcccHHHHHHHHHHHHHHHHHHhcc
Confidence 6888876 555558999999999999999875544
No 27
>PF12388 Peptidase_M57: Dual-action HEIGH metallo-peptidase; InterPro: IPR024653 This entry represents the metallopeptidases M10, M27 and M57. The catalytic triad for proteases in this entry is HE-H-H, which in many members is in the sequence motif HEIGH [].
Probab=87.39 E-value=0.48 Score=45.23 Aligned_cols=35 Identities=31% Similarity=0.459 Sum_probs=26.4
Q ss_pred CCCeEEEcHhHHhcCCCHHHHHHHHHHHHHHHh-hhcHH
Q 016945 280 PGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAV-ARHAA 317 (380)
Q Consensus 280 PgG~I~V~tGLL~~~~nddELAaVLaHEiaHv~-~rH~~ 317 (380)
|++.|.| .|+-. .+-+.++.||.|||||.+ .||..
T Consensus 116 P~~~I~I-~~~~~--~~~~~~~hvi~HEiGH~IGfRHTD 151 (211)
T PF12388_consen 116 PYKFIQI-YGLSN--YSVNVIEHVITHEIGHCIGFRHTD 151 (211)
T ss_pred CCceEEE-EecCC--CchhHHHHHHHHHhhhhccccccC
Confidence 4578888 45522 267789999999999988 57865
No 28
>COG1451 Predicted metal-dependent hydrolase [General function prediction only]
Probab=86.37 E-value=1.1 Score=42.96 Aligned_cols=49 Identities=20% Similarity=0.230 Sum_probs=37.8
Q ss_pred eCCCCcEeeeCCCeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhcHHHHH
Q 016945 270 NEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGI 320 (380)
Q Consensus 270 ~s~~~NAfalPgG~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH~~e~~ 320 (380)
+-...=+-|.+.|.|.+..-|.. ..++.+..|+.||++|....++..+.
T Consensus 147 ~~k~~WGScs~~~~i~~~~~l~~--~p~~~i~YVvvHELaHLke~nHs~~F 195 (223)
T COG1451 147 NMKRRWGSCSKAGEIRFNWRLVM--APEEVIDYVVVHELAHLKEKNHSKRF 195 (223)
T ss_pred eccceeeeecCCCcEEeehhhhc--CCHHHHHHHHHHHHHHHhhhhccHHH
Confidence 34445577888887877776655 48999999999999999988766543
No 29
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [].
Probab=86.19 E-value=1.8 Score=40.98 Aligned_cols=35 Identities=17% Similarity=0.273 Sum_probs=30.5
Q ss_pred CeEEEcHhHHhcCCC----HHHHHHHHHHHHHHHhhhcH
Q 016945 282 GKIVVFTGLLEHFRT----DAEIATIIGHEVAHAVARHA 316 (380)
Q Consensus 282 G~I~V~tGLL~~~~n----ddELAaVLaHEiaHv~~rH~ 316 (380)
..|.++...|....+ .+|+.+||-|||.|+.+.-.
T Consensus 74 ~~I~~S~~~i~~~~~~~~~~~Ei~Gvl~HE~~H~~Q~~~ 112 (205)
T PF04450_consen 74 KEIHFSARYIAKYPADGDVRDEIIGVLYHEMVHCWQWDG 112 (205)
T ss_pred cEEEEeHHHHhhcccccchHHHHHHHHHHHHHHHhhcCC
Confidence 799999999998753 36999999999999998665
No 30
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=83.63 E-value=1.7 Score=35.42 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=20.4
Q ss_pred CCHHHHHHHHHHHHHHHhhhcHHH
Q 016945 295 RTDAEIATIIGHEVAHAVARHAAE 318 (380)
Q Consensus 295 ~nddELAaVLaHEiaHv~~rH~~e 318 (380)
.+++.+..||+||++|........
T Consensus 20 ~~~~~~~~~l~HE~~H~~~~~~~~ 43 (128)
T PF13485_consen 20 SDEDWLDRVLAHELAHQWFGNYFG 43 (128)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcC
Confidence 588889999999999999777653
No 31
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.
Probab=81.61 E-value=1.5 Score=39.97 Aligned_cols=53 Identities=15% Similarity=0.178 Sum_probs=38.8
Q ss_pred EEEEEeCCCCcEeeeCCCeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhcHHHH
Q 016945 265 EVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEG 319 (380)
Q Consensus 265 ~v~Vv~s~~~NAfalPgG~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH~~e~ 319 (380)
++.|-+...-=.-|...|.|-++.-|+. -.++-+..|+.||++|....++...
T Consensus 131 ~i~ir~~ksrWGsc~~~~~I~ln~~L~~--~P~~~idYVvvHEL~Hl~~~nHs~~ 183 (205)
T PF01863_consen 131 KIKIRDMKSRWGSCSSKGNITLNWRLVM--APPEVIDYVVVHELCHLRHPNHSKR 183 (205)
T ss_pred eEEEeehhhccccCCCCCcEEeeccccc--CCccHHHHHHHHHHHHhccCCCCHH
Confidence 3445444444555755799999998887 3888899999999999976555443
No 32
>PRK04860 hypothetical protein; Provisional
Probab=77.28 E-value=2.8 Score=38.33 Aligned_cols=35 Identities=26% Similarity=0.271 Sum_probs=27.9
Q ss_pred CCeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhcH
Q 016945 281 GGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHA 316 (380)
Q Consensus 281 gG~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH~ 316 (380)
.+.|-++--++..- .+++|..||.|||+|......
T Consensus 45 ~~~I~~Np~ll~~~-~~~~l~~~v~HEl~H~~~~~~ 79 (160)
T PRK04860 45 SNEIRLNPVLLLEN-QQAFIDEVVPHELAHLLVYQL 79 (160)
T ss_pred cCCeeeCHHHHhhC-cHHHHHhHHHHHHHHHHHHHH
Confidence 35677776677755 889999999999999987744
No 33
>PF00413 Peptidase_M10: Matrixin This Prosite motif covers only the active site.; InterPro: IPR001818 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M10 (clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Sequences having this domain are extracellular metalloproteases, such as collagenase and stromelysin, which degrade the extracellular matrix, are known as matrixins. They are zinc-dependent, calcium-activated proteases synthesised as inactive precursors (zymogens), which are proteolytically cleaved to yield the active enzyme [, ]. All matrixins and related proteins possess 2 domains: an N-terminal domain, and a zinc-binding active site domain. The N-terminal domain peptide, cleaved during the activation step, includes a conserved PRCGVPDV octapeptide, known as the cysteine switch, whose Cys residue chelates the active site zinc atom, rendering the enzyme inactive [, ]. The active enzyme degrades components of the extracellular matrix, playing a role in the initial steps of tissue remodelling during morphogenesis, wound healing, angiogenesis and tumour invasion [, ].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0031012 extracellular matrix; PDB: 1Q3A_C 3V96_B 1HV5_D 1CXV_A 1SRP_A 1FBL_A 1ZVX_A 1JH1_A 1I76_A 2OY4_A ....
Probab=76.70 E-value=1.7 Score=37.68 Aligned_cols=22 Identities=23% Similarity=0.525 Sum_probs=17.1
Q ss_pred CCHHHHHHHHHHHHHHHh-hhcH
Q 016945 295 RTDAEIATIIGHEVAHAV-ARHA 316 (380)
Q Consensus 295 ~nddELAaVLaHEiaHv~-~rH~ 316 (380)
.+..++..|+.|||||++ +.|.
T Consensus 100 ~~~~~~~~v~~HEiGHaLGL~H~ 122 (154)
T PF00413_consen 100 DSGNDLQSVAIHEIGHALGLDHS 122 (154)
T ss_dssp SSSEEHHHHHHHHHHHHTTBESS
T ss_pred hhhhhhhhhhhhccccccCcCcC
Confidence 355678999999999995 4554
No 34
>COG2856 Predicted Zn peptidase [Amino acid transport and metabolism]
Probab=75.81 E-value=3 Score=39.85 Aligned_cols=31 Identities=16% Similarity=0.177 Sum_probs=24.4
Q ss_pred CeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhcHH
Q 016945 282 GKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAA 317 (380)
Q Consensus 282 G~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH~~ 317 (380)
+.|++++- .+++.--++||||+||++++-..
T Consensus 59 ~~I~iN~n-----~~~~r~rFtlAHELGH~llH~~~ 89 (213)
T COG2856 59 PVIYINAN-----NSLERKRFTLAHELGHALLHTDL 89 (213)
T ss_pred ceEEEeCC-----CCHHHHHHHHHHHHhHHHhcccc
Confidence 57777764 37888899999999999876443
No 35
>PF10463 Peptidase_U49: Peptidase U49; InterPro: IPR019504 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This entry contains peptidases belonging to MEROPS peptidase family U49 (Lit peptidase, clan U-). The Lit peptidase from Escherichia coli functions in bacterial cell death in response to infection by Enterobacteria phage T4. Following binding of Gol peptide to domains II and III of elongation factor Tu, the Lit peptidase cleaves domain I of the elongation factor. This prevents binding of guanine nucleotides, shuts down translation and leads to cell death.
Probab=75.71 E-value=1.9 Score=41.14 Aligned_cols=20 Identities=45% Similarity=0.615 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHhhhcHHH
Q 016945 299 EIATIIGHEVAHAVARHAAE 318 (380)
Q Consensus 299 ELAaVLaHEiaHv~~rH~~e 318 (380)
.++.+|.||++|+..+|...
T Consensus 100 A~~fil~HE~~Hv~~~h~~~ 119 (206)
T PF10463_consen 100 AIAFILLHELAHVVLGHEGD 119 (206)
T ss_pred HHHHHHHHHHHHHHHcCccc
Confidence 47899999999999999877
No 36
>COG3590 PepO Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=74.23 E-value=0.78 Score=49.60 Aligned_cols=44 Identities=30% Similarity=0.577 Sum_probs=31.8
Q ss_pred CCcEeeeCC-CeEEEcHhHHh--cCC-------CHHHHHHHHHHHHHHHhhhcH
Q 016945 273 VINAFCLPG-GKIVVFTGLLE--HFR-------TDAEIATIIGHEVAHAVARHA 316 (380)
Q Consensus 273 ~~NAfalPg-G~I~V~tGLL~--~~~-------nddELAaVLaHEiaHv~~rH~ 316 (380)
.+|||.=|+ ..|++-.++|. +.+ |--.+-+||||||+|.--..+
T Consensus 450 ~VNAYYnp~~N~IVFPAAILQ~PFfd~ea~~a~NYGgIGaVIgHEI~HgFDdqG 503 (654)
T COG3590 450 TVNAYYNPQKNEIVFPAAILQAPFFDPEADSAANYGGIGAVIGHEIGHGFDDQG 503 (654)
T ss_pred HhhhhcCCCCceEeeeHHhcCCCCCCCCcchhhcccCccceehhhhcccccCCc
Confidence 489999998 56777777775 222 334588999999999764433
No 37
>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1. A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=74.19 E-value=2.1 Score=37.81 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHh-hhcHHH
Q 016945 297 DAEIATIIGHEVAHAV-ARHAAE 318 (380)
Q Consensus 297 ddELAaVLaHEiaHv~-~rH~~e 318 (380)
..++..|+.|||||++ ++|...
T Consensus 101 ~~~~~~~~~HEiGHaLGL~H~~~ 123 (156)
T cd04279 101 AENLQAIALHELGHALGLWHHSD 123 (156)
T ss_pred chHHHHHHHHHhhhhhcCCCCCC
Confidence 5679999999999997 455443
No 38
>PF01431 Peptidase_M13: Peptidase family M13 This is family M13 in the peptidase classification. ; InterPro: IPR018497 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M13 (neprilysin family, clan MA(E)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. M13 peptidases are well-studied proteases found in a wide range of organisms including mammals and bacteria. In mammals they participate in processes such as cardiovascular development, blood-pressure regulation, nervous control of respiration, and regulation of the function of neuropeptides in the central nervous system. In bacteria they may be used for digestion of milk [, ]. The family includes eukaryotic and prokaryotic oligopeptidases, as well as some of the proteins responsible for the molecular basis of the blood group antigens e.g. Kell []. Neprilysin (3.4.24.11 from EC), is another member of this group, it is variously known as common acute lymphoblastic leukemia antigen (CALLA), enkephalinase (gp100) and neutral endopeptidase metalloendopeptidase (NEP). It is a plasma membrane-bound mammalian enzyme that is able to digest biologically-active peptides, including enkephalins []. The zinc ligands of neprilysin are known and are analogous to those in thermolysin, a related peptidase [, ]. Neprilysins, like thermolysin, are inhibited by phosphoramidon, which appears to selectively inhibit this family in mammals. The enzymes are all oligopeptidases, digesting oligo- and polypeptides, but not proteins []. Neprilysin consists of a short cytoplasmic domain, a membrane-spanning region and a large extracellular domain. The cytoplasmic domain contains a conformationally-restrained octapeptide, which is thought to act as a stop transfer sequence that prevents proteolysis and secretion [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2QPJ_A 1R1I_A 1R1J_A 1Y8J_A 1R1H_A 1DMT_A 2YB9_A 3DWB_A 3ZUK_A.
Probab=71.84 E-value=3.5 Score=37.89 Aligned_cols=44 Identities=30% Similarity=0.520 Sum_probs=29.0
Q ss_pred cEeeeCC-CeEEEcHhHHhc--CC-------CHHHHHHHHHHHHHHHhhhcHHH
Q 016945 275 NAFCLPG-GKIVVFTGLLEH--FR-------TDAEIATIIGHEVAHAVARHAAE 318 (380)
Q Consensus 275 NAfalPg-G~I~V~tGLL~~--~~-------nddELAaVLaHEiaHv~~rH~~e 318 (380)
|||=.|. ..|+|..|+|.. .. +-..|-+||||||.|..-.+...
T Consensus 1 na~Y~~~~N~i~ip~~~l~~P~f~~~~p~~~~yg~lG~ilahel~hafd~~g~~ 54 (206)
T PF01431_consen 1 NAYYSPRFNSIVIPAGILQPPFFDPNYPPALNYGGLGFILAHELMHAFDPEGIN 54 (206)
T ss_dssp --EEETTTTEEEEEGGGSSTTT--TTS-HHHHHHTHHHHHHHHHHHCTSTTGGG
T ss_pred CCCCCcccCEEEecHHHhCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 5666654 677777777752 11 34568899999999998776644
No 39
>cd04270 ZnMc_TACE_like Zinc-dependent metalloprotease; TACE_like subfamily. TACE, the tumor-necrosis factor-alpha converting enzyme, releases soluble TNF-alpha from transmembrane pro-TNF-alpha.
Probab=71.57 E-value=2.6 Score=40.61 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=21.8
Q ss_pred EEEcHhHHhcCC-----CHHHHHHHHHHHHHHHhhhcH
Q 016945 284 IVVFTGLLEHFR-----TDAEIATIIGHEVAHAVARHA 316 (380)
Q Consensus 284 I~V~tGLL~~~~-----nddELAaVLaHEiaHv~~rH~ 316 (380)
++..+||..... .....|.++||||||..-=.+
T Consensus 146 ~~~n~gl~t~~~~~~~~~~~~~a~t~AHElGHnlGm~H 183 (244)
T cd04270 146 KYLNTGLTTTVNYGKRVPTKESDLVTAHELGHNFGSPH 183 (244)
T ss_pred eeeecceEeeeccCCccchhHHHHHHHHHHHHhcCCCC
Confidence 455567664221 234578999999999986433
No 40
>cd04276 ZnMc_MMP_like_2 Zinc-dependent metalloprotease; MMP_like sub-family 2. A group of bacterial metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=71.44 E-value=3.1 Score=39.15 Aligned_cols=50 Identities=24% Similarity=0.475 Sum_probs=34.0
Q ss_pred EEEEeCC-CCcEeee----C------CCeEEEcHhHHhcCCCH------HHHHHHHHHHHHHHhh-hc
Q 016945 266 VLVVNEP-VINAFCL----P------GGKIVVFTGLLEHFRTD------AEIATIIGHEVAHAVA-RH 315 (380)
Q Consensus 266 v~Vv~s~-~~NAfal----P------gG~I~V~tGLL~~~~nd------dELAaVLaHEiaHv~~-rH 315 (380)
+..+.++ ..+|+.- | ++.|.++++.+....+. +-|..+++||+||.+- .|
T Consensus 65 ir~~~~~~~~~~~gps~~dPrTGeIl~a~V~l~~~~~~~~~~~~~~~~~~~~~~~~~he~gh~lGl~h 132 (197)
T cd04276 65 IRWIHSPNGGWAYGPSVVDPRTGEILKADVILYSGFLRQDQLWYEDLLAASLRYLLAHEVGHTLGLRH 132 (197)
T ss_pred EEEEecCCCcceecccccCCCCCCeEEEEEEeCchhhccchhHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 5555555 4555542 3 26788999998765433 5589999999999873 45
No 41
>cd04268 ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_like subfamily. This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases.
Probab=71.19 E-value=3 Score=36.57 Aligned_cols=19 Identities=26% Similarity=0.445 Sum_probs=15.6
Q ss_pred CHHHHHHHHHHHHHHHhhh
Q 016945 296 TDAEIATIIGHEVAHAVAR 314 (380)
Q Consensus 296 nddELAaVLaHEiaHv~~r 314 (380)
+.+.+-+|+.|||||.+-=
T Consensus 90 ~~~~~~~~~~HEiGHaLGL 108 (165)
T cd04268 90 SGARLRNTAEHELGHALGL 108 (165)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 3457899999999999854
No 42
>cd04269 ZnMc_adamalysin_II_like Zinc-dependent metalloprotease; adamalysin_II_like subfamily. Adamalysin II is a snake venom zinc endopeptidase. This subfamily contains other snake venom metalloproteinases, as well as membrane-anchored metalloproteases belonging to the ADAM family. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=68.87 E-value=3.5 Score=37.60 Aligned_cols=16 Identities=25% Similarity=0.360 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHh
Q 016945 297 DAEIATIIGHEVAHAV 312 (380)
Q Consensus 297 ddELAaVLaHEiaHv~ 312 (380)
-...|.++||||||..
T Consensus 128 ~~~~a~~~AHElGH~l 143 (194)
T cd04269 128 LLLFAVTMAHELGHNL 143 (194)
T ss_pred hHHHHHHHHHHHHhhc
Confidence 5678999999999998
No 43
>PF01447 Peptidase_M4: Thermolysin metallopeptidase, catalytic domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR013856 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases that belong to the MEROPS peptidase family M4 (thermolysin family, clan MA(E)). The protein fold of the peptidase domain of thermolysin, is the type example for members of the clan MA. The thermolysin family is composed only of secreted eubacterial endopeptidases. The zinc-binding residues are H-142, H-146 and E-166, with E-143 acting as the catalytic residue. Thermolysin also contains 4 calcium-binding sites, which contribute to its unusual thermostability. The family also includes enzymes from a number of pathogens, including Legionella and Listeria, and the protein pseudolysin, all with a substrate specificity for an aromatic residue in the P1' position. Three-dimensional structure analysis has shown that the enzymes undergo a hinge-bend motion during catalysis. Pseudolysin has a broader specificity, acting on large molecules such as elastin and collagen, possibly due to its wider active site cleft []. This entry represents a domain found in peptidase M4 family members.; GO: 0004222 metalloendopeptidase activity; PDB: 3NQX_A 3NQZ_B 3NQY_B 1BQB_A 1U4G_A 1EZM_A 3DBK_A 1ESP_A 1NPC_A 1LND_E ....
Probab=68.65 E-value=3 Score=37.60 Aligned_cols=50 Identities=26% Similarity=0.327 Sum_probs=26.5
Q ss_pred CCeEEEEE-eCCCCcEeeeCCCeEEEcHhHHhcCCCHHHHHH---HHHHHHHHHhhhc
Q 016945 262 LNWEVLVV-NEPVINAFCLPGGKIVVFTGLLEHFRTDAEIAT---IIGHEVAHAVARH 315 (380)
Q Consensus 262 ~~w~v~Vv-~s~~~NAfalPgG~I~V~tGLL~~~~nddELAa---VLaHEiaHv~~rH 315 (380)
.+....|= ...-.|||-- |..|+.-.|--..+. .+++ |+||||+|.+-.|
T Consensus 97 ~~~~~~Vhyg~~~~NAfW~-g~~m~yGdG~~~~f~---~~~~~lDVvaHEltHGVte~ 150 (150)
T PF01447_consen 97 MPIISRVHYGKNYNNAFWN-GSQMVYGDGDGQIFK---PFASSLDVVAHELTHGVTEY 150 (150)
T ss_dssp S-EEEEESESSSTT-EEE--SSSEEEE---SSSBS----GGG-HHHHHHHHHHHHHHT
T ss_pred cEEEEEEeCCCCccCcccc-CCEEEEECCCCcccc---cCccccceeeeccccccccC
Confidence 34443332 2345899984 567777766542222 2333 9999999987654
No 44
>PF01421 Reprolysin: Reprolysin (M12B) family zinc metalloprotease This Prosite motif covers only the active site.; InterPro: IPR001590 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12B (adamalysin family, clan (MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The adamalysins are zinc dependent endopeptidases found in snake venom. There are some mammalian proteins such as P78325 from SWISSPROT, and fertilin Q28472 from SWISSPROT. Fertilin and closely related proteins appear to not have some active site residues and may not be active enzymes. CD156 (also called ADAM8 (3.4.24 from EC) or MS2 human) has been implicated in extravasation of leukocytes. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2E3X_A 2W15_A 2W14_A 2W13_A 2W12_A 1ND1_A 3K7L_A 2DW2_A 2DW0_B 2DW1_A ....
Probab=68.23 E-value=4.3 Score=37.21 Aligned_cols=18 Identities=39% Similarity=0.678 Sum_probs=15.4
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 016945 295 RTDAEIATIIGHEVAHAV 312 (380)
Q Consensus 295 ~nddELAaVLaHEiaHv~ 312 (380)
.+-..+|.+|||||||.+
T Consensus 126 ~~~~~~a~~~AHelGH~l 143 (199)
T PF01421_consen 126 RSGLSFAVIIAHELGHNL 143 (199)
T ss_dssp SSHHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHhc
Confidence 357789999999999975
No 45
>PF13688 Reprolysin_5: Metallo-peptidase family M12; PDB: 2FV5_B 3EWJ_A 3KME_A 3L0T_B 1BKC_E 3G42_D 2I47_D 2FV9_B 3LEA_A 1ZXC_B ....
Probab=66.70 E-value=3.5 Score=37.39 Aligned_cols=18 Identities=22% Similarity=0.338 Sum_probs=14.6
Q ss_pred CHHHHHHHHHHHHHHHhh
Q 016945 296 TDAEIATIIGHEVAHAVA 313 (380)
Q Consensus 296 nddELAaVLaHEiaHv~~ 313 (380)
+...-.-|+||||||..-
T Consensus 138 ~~~~~~~~~AHEiGH~lG 155 (196)
T PF13688_consen 138 PTYNGAITFAHEIGHNLG 155 (196)
T ss_dssp -HHHHHHHHHHHHHHHTT
T ss_pred CCCceehhhHHhHHHhcC
Confidence 467788999999999874
No 46
>cd00203 ZnMc Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which are involved in vertebrate development and disease.
Probab=62.97 E-value=3.6 Score=36.00 Aligned_cols=20 Identities=40% Similarity=0.526 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHhh-hcH
Q 016945 297 DAEIATIIGHEVAHAVA-RHA 316 (380)
Q Consensus 297 ddELAaVLaHEiaHv~~-rH~ 316 (380)
...++.+++|||||.+- .|.
T Consensus 93 ~~~~~~~~~HElGH~LGl~H~ 113 (167)
T cd00203 93 TKEGAQTIAHELGHALGFYHD 113 (167)
T ss_pred cccchhhHHHHHHHHhCCCcc
Confidence 35789999999999983 344
No 47
>PF13582 Reprolysin_3: Metallo-peptidase family M12B Reprolysin-like; PDB: 3P24_C.
Probab=62.96 E-value=4.2 Score=34.02 Aligned_cols=11 Identities=27% Similarity=0.655 Sum_probs=10.2
Q ss_pred HHHHHHHHHHh
Q 016945 302 TIIGHEVAHAV 312 (380)
Q Consensus 302 aVLaHEiaHv~ 312 (380)
.+++|||||..
T Consensus 109 ~~~~HEiGH~l 119 (124)
T PF13582_consen 109 DTFAHEIGHNL 119 (124)
T ss_dssp THHHHHHHHHT
T ss_pred eEeeehhhHhc
Confidence 89999999986
No 48
>PF14891 Peptidase_M91: Effector protein
Probab=62.95 E-value=4.6 Score=36.84 Aligned_cols=17 Identities=24% Similarity=0.288 Sum_probs=13.6
Q ss_pred CHHHHHHHHHHHHHHHh
Q 016945 296 TDAEIATIIGHEVAHAV 312 (380)
Q Consensus 296 nddELAaVLaHEiaHv~ 312 (380)
.+..=+.||+|||+|+.
T Consensus 99 ~~~~p~v~L~HEL~HA~ 115 (174)
T PF14891_consen 99 SPRPPFVVLYHELIHAY 115 (174)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 34566899999999975
No 49
>cd04267 ZnMc_ADAM_like Zinc-dependent metalloprotease, ADAM_like or reprolysin_like subgroup. The adamalysin_like or ADAM family of metalloproteases contains proteolytic domains from snake venoms, proteases from the mammalian reproductive tract, and the tumor necrosis factor alpha convertase, TACE. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=62.87 E-value=3 Score=37.89 Aligned_cols=16 Identities=25% Similarity=0.383 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHh
Q 016945 297 DAEIATIIGHEVAHAV 312 (380)
Q Consensus 297 ddELAaVLaHEiaHv~ 312 (380)
.-..+.++|||+||.+
T Consensus 130 ~~~~~~~~aHElGH~l 145 (192)
T cd04267 130 TLLTALTMAHELGHNL 145 (192)
T ss_pred ceeehhhhhhhHHhhc
Confidence 3567899999999998
No 50
>cd04272 ZnMc_salivary_gland_MPs Zinc-dependent metalloprotease, salivary_gland_MPs. Metalloproteases secreted by the salivary glands of arthropods.
Probab=61.67 E-value=4.9 Score=37.66 Aligned_cols=15 Identities=27% Similarity=0.284 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHhh
Q 016945 299 EIATIIGHEVAHAVA 313 (380)
Q Consensus 299 ELAaVLaHEiaHv~~ 313 (380)
..+.++||||||.+-
T Consensus 144 ~~~~~~AHElGH~lG 158 (220)
T cd04272 144 YGVYTMTHELAHLLG 158 (220)
T ss_pred ccHHHHHHHHHHHhC
Confidence 458999999999983
No 51
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=61.12 E-value=9.6 Score=34.89 Aligned_cols=31 Identities=29% Similarity=0.318 Sum_probs=25.2
Q ss_pred eEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhh
Q 016945 283 KIVVFTGLLEHFRTDAEIATIIGHEVAHAVAR 314 (380)
Q Consensus 283 ~I~V~tGLL~~~~nddELAaVLaHEiaHv~~r 314 (380)
.|=++--|+..- .+|.+..|+.||++|.+..
T Consensus 45 ~I~lNP~ll~en-~~~f~~~vV~HELaHl~ly 75 (156)
T COG3091 45 EIRLNPKLLEEN-GEDFIEQVVPHELAHLHLY 75 (156)
T ss_pred ccccCHHHHHHc-cHHHHHHHHHHHHHHHHHH
Confidence 666666677755 8999999999999998753
No 52
>PF02031 Peptidase_M7: Streptomyces extracellular neutral proteinase (M7) family; InterPro: IPR000013 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M7 (snapalysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. With a molecular weight of around 16kDa, Streptomyces extracellular neutral protease is one of the smallest known proteases []; it is capable of hydrolysing milk proteins []. The enzyme is synthesised as a proenzyme with a signal peptide, a propeptide and an active domain that contains the conserved HEXXH motif characteristic of metalloproteases. Although family M7 shows active site sequence similarity to other members, it differs in one major respect: the third zinc ligand appears to be an aspartate residue rather than the usual histidine.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0005576 extracellular region; PDB: 1C7K_A 1KUH_A.
Probab=58.71 E-value=5.9 Score=35.34 Aligned_cols=47 Identities=19% Similarity=0.109 Sum_probs=22.7
Q ss_pred CCeEEEEEeCC-CCcEeeeCC--CeEEEcHhHHhcCCCHHHHHHHHHHHHHHHh
Q 016945 262 LNWEVLVVNEP-VINAFCLPG--GKIVVFTGLLEHFRTDAEIATIIGHEVAHAV 312 (380)
Q Consensus 262 ~~w~v~Vv~s~-~~NAfalPg--G~I~V~tGLL~~~~nddELAaVLaHEiaHv~ 312 (380)
.+..++...++ ..=|-..+. |.||+-+.--..- +.+. |.+||+||++
T Consensus 40 a~~~~~~~~~~~~sya~~~g~G~G~I~l~~~~~qgy---~~~R-IaaHE~GHiL 89 (132)
T PF02031_consen 40 ADIRYYEGNDPRGSYASTDGLGSGYIFLDYQQNQGY---NSTR-IAAHELGHIL 89 (132)
T ss_dssp -SEEEEEE--TT--EEEE-SSS-EEEEEEHHHHHHS----HHH-HHHHHHHHHH
T ss_pred CcEEEEEecCCCCcccccCCCCcEEEEechHHhhCC---ccce-eeeehhcccc
Confidence 34555544333 244555554 5666654332222 1222 8999999986
No 53
>PRK09672 phage exclusion protein Lit; Provisional
Probab=58.63 E-value=6.2 Score=39.71 Aligned_cols=30 Identities=30% Similarity=0.347 Sum_probs=22.9
Q ss_pred eEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhcHH
Q 016945 283 KIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAA 317 (380)
Q Consensus 283 ~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH~~ 317 (380)
.+-+...|+-. .+|.|+-||++|+...|..
T Consensus 153 ~~~~andLfl~-----A~a~i~~HEiaHv~~~h~~ 182 (305)
T PRK09672 153 DQEVANDLFLC-----ALAWILLHEIAHVEFQHSS 182 (305)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHhcccc
Confidence 44444445443 4899999999999999998
No 54
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=57.09 E-value=8.9 Score=41.77 Aligned_cols=31 Identities=23% Similarity=0.315 Sum_probs=22.5
Q ss_pred CeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhc
Q 016945 282 GKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARH 315 (380)
Q Consensus 282 G~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH 315 (380)
|.+|....++. .+.+++.|++|||||---+.
T Consensus 264 ~ltf~~~~ll~---~d~s~~~viaHElAHqWfGN 294 (601)
T TIGR02411 264 NLTFATPTLIA---GDRSNVDVIAHELAHSWSGN 294 (601)
T ss_pred cceeecccccc---CChhhhhhHHHHHHhhccCc
Confidence 36677666653 34567899999999987664
No 55
>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A ....
Probab=56.81 E-value=6.4 Score=35.81 Aligned_cols=17 Identities=18% Similarity=0.259 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHhhhcH
Q 016945 300 IATIIGHEVAHAVARHA 316 (380)
Q Consensus 300 LAaVLaHEiaHv~~rH~ 316 (380)
-.-++||||||..--.+
T Consensus 111 ~~~~~aHElGH~lGa~H 127 (173)
T PF13574_consen 111 GIDTFAHELGHQLGAPH 127 (173)
T ss_dssp HHHHHHHHHHHHHT---
T ss_pred eeeeehhhhHhhcCCCC
Confidence 45679999999885443
No 56
>TIGR02289 M3_not_pepF oligoendopeptidase, M3 family. This family consists of probable oligoendopeptidases in the M3 family, related to lactococcal PepF and group B streptococcal PepB (TIGR00181) but in a distinct clade with considerable sequence differences. The likely substrate is small peptides and not whole proteins, as with PepF, but members are not characterized and the activity profile may differ. Several bacteria have both a member of this family and a member of the PepF family.
Probab=56.12 E-value=8.3 Score=41.28 Aligned_cols=44 Identities=16% Similarity=0.273 Sum_probs=26.7
Q ss_pred CCCCcEeeeC--C-CeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhcHHH
Q 016945 271 EPVINAFCLP--G-GKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAE 318 (380)
Q Consensus 271 s~~~NAfalP--g-G~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH~~e 318 (380)
.+...|||.+ . +.-|| ++..-.+-+++ .+|+||+||..+....+
T Consensus 309 gK~~Gayc~~~~~~~~P~I---~~Nf~~t~~dv-~TL~HElGHa~H~~~s~ 355 (549)
T TIGR02289 309 GKAAGGYCTYLPKYKAPFI---FSNFNGTSGDI-DVLTHEAGHAFHVYESR 355 (549)
T ss_pred CCCCCcccCCCCCCCCcEE---EEeCCCChhHH-HHHHHHhhHHHHHHHhc
Confidence 4457899975 2 22333 23334455554 56899999998765443
No 57
>cd04278 ZnMc_MMP Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate specification, cell migration, tissue repair, tumorigenesis, gain or loss of tissue-specific functions, and apoptosis. In many instances, they are anchored to cell membranes via trans-membrane domains, and their activity is controlled via TIMPs (tissue inhibitors of metalloproteinases).
Probab=55.91 E-value=5.4 Score=35.25 Aligned_cols=20 Identities=25% Similarity=0.609 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHh-hhcH
Q 016945 297 DAEIATIIGHEVAHAV-ARHA 316 (380)
Q Consensus 297 ddELAaVLaHEiaHv~-~rH~ 316 (380)
...+-.|+.|||||++ +.|.
T Consensus 104 ~~~~~~~~~HEiGHaLGL~H~ 124 (157)
T cd04278 104 GTDLFSVAAHEIGHALGLGHS 124 (157)
T ss_pred cchHHHHHHHHhccccccCCC
Confidence 3458999999999986 3554
No 58
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=55.63 E-value=5.7 Score=43.05 Aligned_cols=31 Identities=29% Similarity=0.415 Sum_probs=24.2
Q ss_pred eEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhcH
Q 016945 283 KIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHA 316 (380)
Q Consensus 283 ~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH~ 316 (380)
-.|++--||. .|.-|+.||||||||-.-+-.
T Consensus 274 ltF~TpTlla---GDrsl~~vIaHEIAHSWtGNl 304 (613)
T KOG1047|consen 274 LTFVTPTLLA---GDRSLVDVIAHEIAHSWTGNL 304 (613)
T ss_pred eeeecchhhc---CCcchhhHHHHHhhhhhcccc
Confidence 5677776765 788899999999999766543
No 59
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=55.01 E-value=16 Score=36.36 Aligned_cols=53 Identities=23% Similarity=0.181 Sum_probs=30.2
Q ss_pred eEEEEEeCCCCcEeeeCCCeEEEcHhHHhc--CC---CHHHHHHHHHHHHHHHhhhcH
Q 016945 264 WEVLVVNEPVINAFCLPGGKIVVFTGLLEH--FR---TDAEIATIIGHEVAHAVARHA 316 (380)
Q Consensus 264 w~v~Vv~s~~~NAfalPgG~I~V~tGLL~~--~~---nddELAaVLaHEiaHv~~rH~ 316 (380)
..+.++.+-..++..-+|-.++-...++-. .. ...+++.||||||+|..-+..
T Consensus 254 ~~~v~~p~~~~~~me~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~iahElahqWfGn~ 311 (390)
T PF01433_consen 254 LDIVAVPDFPFGGMENWGLITYRESYLLYDPDISTIGDKQEIASLIAHELAHQWFGNL 311 (390)
T ss_dssp EEEEEEST-SSSEE--TTEEEEEGGGTS-STTTS-HHHHHHHHHHHHHHHHTTTBTTT
T ss_pred eeEEEEeccccccccccccccccccccccCcccccchhhhhhHHHHHHHHHHHHhccC
Confidence 445555533346666666444444444422 11 245789999999999987763
No 60
>KOG3624 consensus M13 family peptidase [Amino acid transport and metabolism]
Probab=54.18 E-value=9.5 Score=41.84 Aligned_cols=45 Identities=33% Similarity=0.537 Sum_probs=33.8
Q ss_pred CCcEeeeCC-CeEEEcHhHHhc----C-----CCHHHHHHHHHHHHHHHhhhcHH
Q 016945 273 VINAFCLPG-GKIVVFTGLLEH----F-----RTDAEIATIIGHEVAHAVARHAA 317 (380)
Q Consensus 273 ~~NAfalPg-G~I~V~tGLL~~----~-----~nddELAaVLaHEiaHv~~rH~~ 317 (380)
.+|||-.|. ..|.|.-|+|.. . -+=.-+.+||||||+|..-.++.
T Consensus 481 ~~na~Y~~~~N~i~~pa~ilq~P~f~~~~P~~~nyg~iG~vigHEl~H~FD~~G~ 535 (687)
T KOG3624|consen 481 QVNAFYSPEKNEIVFPAGLLQPPFFDLSYPDYLNYGGIGFVIGHELTHGFDDQGR 535 (687)
T ss_pred eeeccccCCCceEEEehhcccCCCCCcccchhhhhHHHHHHHHHHHhhccccccc
Confidence 478877664 678888888874 1 16667899999999998766653
No 61
>cd04277 ZnMc_serralysin_like Zinc-dependent metalloprotease, serralysin_like subfamily. Serralysins and related proteases are important virulence factors in pathogenic bacteria. They may be secreted into the medium via a mechanism found in gram-negative bacteria, that does not require n-terminal signal sequences which are cleaved after the transmembrane translocation. A calcium-binding domain c-terminal to the metalloprotease domain, which contains multiple tandem repeats of a nine-residue motif including the pattern GGxGxD, and which forms a parallel beta roll may be involved in the translocation mechanism and/or substrate binding. Serralysin family members may have a broad spectrum of substrates each, including host immunoglobulins, complement proteins, cell matrix and cytoskeletal proteins, as well as antimicrobial peptides.
Probab=53.78 E-value=10 Score=34.39 Aligned_cols=37 Identities=22% Similarity=0.237 Sum_probs=23.4
Q ss_pred CeEEEcHhHHhcC-CCHHHHHHHHHHHHHHHhh-hcHHH
Q 016945 282 GKIVVFTGLLEHF-RTDAEIATIIGHEVAHAVA-RHAAE 318 (380)
Q Consensus 282 G~I~V~tGLL~~~-~nddELAaVLaHEiaHv~~-rH~~e 318 (380)
|.|++........ ..-...-.++.|||||.+- +|.-+
T Consensus 94 g~i~~~~~~~~~~~~~g~~~~~t~~HEiGHaLGL~H~~~ 132 (186)
T cd04277 94 GDIWFNSSYDTNSDSPGSYGYQTIIHEIGHALGLEHPGD 132 (186)
T ss_pred ceeEEecCcccccCCCChhhHHHHHHHHHHHhcCCCCCc
Confidence 5666665543321 1235568899999999974 55544
No 62
>COG2738 Predicted Zn-dependent protease [General function prediction only]
Probab=53.45 E-value=8 Score=36.96 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhhhcHHHHHH
Q 016945 301 ATIIGHEVAHAVARHAAEGIT 321 (380)
Q Consensus 301 AaVLaHEiaHv~~rH~~e~~~ 321 (380)
.+|-|||+||.++++....+.
T Consensus 93 ~aVAAHEVGHAiQd~~~Y~~L 113 (226)
T COG2738 93 IAVAAHEVGHAIQDQEDYAFL 113 (226)
T ss_pred HHHHHHHhhHHHhhhcccHHH
Confidence 479999999999998765544
No 63
>smart00235 ZnMc Zinc-dependent metalloprotease. Neutral zinc metallopeptidases. This alignment represents a subset of known subfamilies. Highest similarity occurs in the HExxH zinc-binding site/ active site.
Probab=52.58 E-value=7.3 Score=33.48 Aligned_cols=31 Identities=26% Similarity=0.401 Sum_probs=18.8
Q ss_pred Eee-eCCCeEEEcHhHHhcCCCHHHHHHHHHHHHHHHh
Q 016945 276 AFC-LPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAV 312 (380)
Q Consensus 276 Afa-lPgG~I~V~tGLL~~~~nddELAaVLaHEiaHv~ 312 (380)
|++ .|+|.+-+.-+ .-+. -.+|+.|||||++
T Consensus 67 a~~g~~~g~~~~~~~--~~~~----~~~~~~HEigHaL 98 (140)
T smart00235 67 SHAGRPGGDQHFSLG--NGCI----NTGVAAHELGHAL 98 (140)
T ss_pred eeeecCCCceEEEcc--CCcC----CcccHHHHHHHHh
Confidence 444 25676666431 1121 2359999999997
No 64
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=52.17 E-value=8.7 Score=37.12 Aligned_cols=19 Identities=26% Similarity=0.464 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhhhcHHHH
Q 016945 301 ATIIGHEVAHAVARHAAEG 319 (380)
Q Consensus 301 AaVLaHEiaHv~~rH~~e~ 319 (380)
.+|=|||+||.++++....
T Consensus 90 vaVAAHEvGHAiQ~a~~Y~ 108 (222)
T PF04298_consen 90 VAVAAHEVGHAIQHAEGYA 108 (222)
T ss_pred HHHHHHHHhHHHhccccCc
Confidence 4689999999999886443
No 65
>COG3864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.57 E-value=15 Score=37.53 Aligned_cols=39 Identities=15% Similarity=0.163 Sum_probs=32.3
Q ss_pred CCeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhcHHHHH
Q 016945 281 GGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGI 320 (380)
Q Consensus 281 gG~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH~~e~~ 320 (380)
+=.++.+--++..| ..+++.+.|-||+-|+++.|..++-
T Consensus 51 ~~~~y~NPei~~~~-p~~~~~aLl~HEV~Hi~l~Hi~r~~ 89 (396)
T COG3864 51 YFTMYFNPEIFLNC-PISEMKALLKHEVYHIMLNHIKRAE 89 (396)
T ss_pred ceEEEeCHHHHccC-CHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34667777777777 9999999999999999999996653
No 66
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=51.43 E-value=16 Score=41.37 Aligned_cols=45 Identities=27% Similarity=0.288 Sum_probs=26.6
Q ss_pred CCCcEeeeCC-CeEEEcHhHHhcCC-C---HHHHHHHHHHHHHHHhhhcH
Q 016945 272 PVINAFCLPG-GKIVVFTGLLEHFR-T---DAEIATIIGHEVAHAVARHA 316 (380)
Q Consensus 272 ~~~NAfalPg-G~I~V~tGLL~~~~-n---ddELAaVLaHEiaHv~~rH~ 316 (380)
|+.++-+|-+ |.|.+...++..-. + ...++.|++|||||---+..
T Consensus 254 P~f~~GaMEn~Glit~~e~~l~~~~~~~~~~~~~~~viaHElAHqWFGnl 303 (831)
T TIGR02412 254 PEFNAGAMENAGCVTFAENFLHRAEATRAEKENRAGVILHEMAHMWFGDL 303 (831)
T ss_pred CCCCCCcccccceeeechhhccCCcCCHHHHHHHHHHHHHHHHHHHhCCE
Confidence 4444334433 56666655552211 2 34588999999999877643
No 67
>PF13583 Reprolysin_4: Metallo-peptidase family M12B Reprolysin-like
Probab=50.47 E-value=8.3 Score=36.16 Aligned_cols=17 Identities=29% Similarity=0.612 Sum_probs=12.9
Q ss_pred HHHHHHHHHHh-hhcHHH
Q 016945 302 TIIGHEVAHAV-ARHAAE 318 (380)
Q Consensus 302 aVLaHEiaHv~-~rH~~e 318 (380)
-+++|||||.+ ++|..+
T Consensus 139 ~~~aHEiGH~lGl~H~~~ 156 (206)
T PF13583_consen 139 QTFAHEIGHNLGLRHDFD 156 (206)
T ss_pred hHHHHHHHHHhcCCCCcc
Confidence 45999999987 456554
No 68
>cd04271 ZnMc_ADAM_fungal Zinc-dependent metalloprotease, ADAM_fungal subgroup. The adamalysin_like or ADAM (A Disintegrin And Metalloprotease) family of metalloproteases are integral membrane proteases acting on a variety of extracellular targets. They are involved in shedding soluble peptides or proteins from the cell surface. This subfamily contains fungal ADAMs, whose precise function has yet to be determined.
Probab=50.07 E-value=5.9 Score=37.88 Aligned_cols=14 Identities=21% Similarity=0.534 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhhhc
Q 016945 302 TIIGHEVAHAVARH 315 (380)
Q Consensus 302 aVLaHEiaHv~~rH 315 (380)
.++||||||.+-=.
T Consensus 147 ~t~AHElGHnLGm~ 160 (228)
T cd04271 147 QVFAHEIGHTFGAV 160 (228)
T ss_pred eehhhhhhhhcCCC
Confidence 69999999998443
No 69
>TIGR00181 pepF oligoendopeptidase F. This family represents the oligoendopeptidase F clade of the family of larger M3 or thimet (for thiol-dependent metallopeptidase) oligopeptidase family. Lactococcus lactis PepF hydrolyzed peptides of 7 and 17 amino acids with fairly broad specificity. The homolog of lactococcal PepF in group B Streptococcus was named PepB (PubMed:8757883), with the name difference reflecting a difference in species of origin rather activity; substrate profiles were quite similar. Differences in substrate specificity should be expected in other species. The gene is duplicated in Lactococcus lactis on the plasmid that bears it. A shortened second copy is found in Bacillus subtilis.
Probab=49.57 E-value=10 Score=40.65 Aligned_cols=42 Identities=17% Similarity=0.223 Sum_probs=26.0
Q ss_pred eCCCCcEeeeCC----CeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhcHH
Q 016945 270 NEPVINAFCLPG----GKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAA 317 (380)
Q Consensus 270 ~s~~~NAfalPg----G~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH~~ 317 (380)
+.+..-|||.+. +.|++ ..-.+-+++ .+|+||+||..+....
T Consensus 350 ~gK~~Ga~~~~~~~~~p~il~-----N~~~~~~dv-~TLaHElGHa~H~~~~ 395 (591)
T TIGR00181 350 KGKRSGAYSIGGYKVKPYILM-----NWDGTLNSV-FTLAHELGHSMHSYFS 395 (591)
T ss_pred CCCCCCcccCCCCCCCCeEEE-----ecCCCcchH-HHHHHHhhhHHHHHHH
Confidence 344578999753 33433 333343443 5799999999877654
No 70
>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase. Since the WLM domain contains all known active site residues of zincins, it is predicted to be a catalytically active peptidase domain. The WLM domain is a eukaryotic domain represented in plants, fungi, Plasmodium, and kinetoplastids. By contrast, it is absent in animals, Cryptosporidium, and Microsporidia, suggesting that it has been lost on multiple occasions during the evolution of eukaryotes. The WLM domain is found either in stand-alone form or in association with other domains such as the RanBP2 zinc finger , the ubiquitin domain, or the PUB/PUG domain. This domain could function as a specific de-SUMOylating domain of distinct protein complexes in the nucleus and the cytoplasm []. It has been suggested to form a segregated alpha/beta structure with eight helices and five strands. Proteins containign this domain include yeast WSS1 (a weak suppressor of the Ub-related protein SMT3), and various putative metalloproteases from plant and fungal species.
Probab=49.06 E-value=16 Score=34.17 Aligned_cols=27 Identities=26% Similarity=0.219 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHHHHhhhcHHHHHHH
Q 016945 296 TDAEIATIIGHEVAHAVARHAAEGITK 322 (380)
Q Consensus 296 nddELAaVLaHEiaHv~~rH~~e~~~~ 322 (380)
+-++|..||-||++|++...+....-+
T Consensus 78 ~~~~i~~t~lHELaH~~~~~H~~~F~~ 104 (186)
T PF08325_consen 78 PYETILGTMLHELAHNVHGPHDDKFWK 104 (186)
T ss_pred eHHHHHHHHHHHHHhcccCCccHHHHH
Confidence 678999999999999998777665544
No 71
>PF14521 Aspzincin_M35: Lysine-specific metallo-endopeptidase ; PDB: 2X3C_A 2X3A_A 2X3B_A 1GE7_B 1GE6_A 1GE5_A 1G12_A.
Probab=47.65 E-value=23 Score=31.57 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=27.8
Q ss_pred CCCcEeeeCCC---eEEEcHhHHhcC-CCHHHHHHHHHHHHHH
Q 016945 272 PVINAFCLPGG---KIVVFTGLLEHF-RTDAEIATIIGHEVAH 310 (380)
Q Consensus 272 ~~~NAfalPgG---~I~V~tGLL~~~-~nddELAaVLaHEiaH 310 (380)
+..-|++.|+. .|++-..+...- ...+--+.+|-||++|
T Consensus 64 ~~~~a~~~~~~~~~~IyLc~~F~~~p~~g~~Sk~~TLiHE~SH 106 (148)
T PF14521_consen 64 NNTYAYVYPDSPTYTIYLCPAFFSAPTTGKDSKEGTLIHEWSH 106 (148)
T ss_dssp SSSSEEE-TTST-TEEEE-HHHHHS-SSSTT-HHHHHHHHHHH
T ss_pred cceEEEEECCCCceEEEEChhhcCCCCCCCCchHHHHHHhhhh
Confidence 35678888884 599998888732 3456789999999999
No 72
>PF06861 BALF1: BALF1 protein; InterPro: IPR010677 Epstein-Barr virus (strain GD1) (HHV-4), a human tumour DNA virus and a prominent member of gamma-herpesviruses, encodes homologues of cellular antiapoptotic viral Bcl-2 proteins BALF1 and BHRF1. They protect the virus from apoptosis in its host cell during virus synthesis [, ]. The virus infects B lymphocytes to establish a latent infection and yield proliferating, growth-transformed B cells in vitro. Bcl-2 genes are essential for the initial evasion of apoptosis which allows it to establish a latent infection or cause cellular transformation, or both []. Bcl-2 family proteins can inhibit or induce programmed cell death in part by counteracting the activity of other BCL-2 family members. BALF1, inhibits the antiapoptotic activity of EBV BHRF1 and of KSBcl-2 in several transfected cell lines. BALF1 fails, however, to inhibit the cellular BCL-2 family member, BCL-x(L). Thus, BALF1 acts as a negative regulator of the survival function of BHRF1, similar to the counterbalance observed between cellular BCL-2 family members [].
Probab=46.83 E-value=17 Score=34.03 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=24.0
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhhhcHHH
Q 016945 291 LEHFRTDAEIATIIGHEVAHAVARHAAE 318 (380)
Q Consensus 291 L~~~~nddELAaVLaHEiaHv~~rH~~e 318 (380)
...++||.|=++|++|++||...+|-.-
T Consensus 123 ~~~l~~d~e~~s~v~~~lA~Fy~~~r~~ 150 (182)
T PF06861_consen 123 MRNLLNDHENASLVSHALAHFYLRYRRA 150 (182)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence 3456799999999999999999999654
No 73
>cd04273 ZnMc_ADAMTS_like Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that combine ADAM-like metalloproteinases with thrombospondin type-1 repeats. ADAMTS (a disintegrin and metalloproteinase with thrombospondin motifs) proteinases are inhibited by TIMPs (tissue inhibitors of metalloproteinases), and they play roles in coagulation, angiogenesis, development and progression of arthritis. They hydrolyze the von Willebrand factor precursor and various components of the extracellular matrix.
Probab=46.21 E-value=2.8 Score=38.89 Aligned_cols=13 Identities=38% Similarity=0.567 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHh
Q 016945 300 IATIIGHEVAHAV 312 (380)
Q Consensus 300 LAaVLaHEiaHv~ 312 (380)
.|.++||||||.+
T Consensus 140 ~a~~~aHElGH~L 152 (207)
T cd04273 140 SAFTIAHELGHVL 152 (207)
T ss_pred eEEeeeeechhhc
Confidence 5889999999988
No 74
>cd06459 M3B_Oligoendopeptidase_F Peptidase family M3B Oligopeptidase F (PepF; Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and includes oligoendopeptidase F from Lactococcus lactis. This enzyme hydrolyzes peptides containing between 7 and 17 amino acids with fairly broad specificity. The PepF gene is duplicated in L. lactis on the plasmid that bears it, while a shortened second copy is found in Bacillus subtilis. Most bacterial PepFs are cytoplasmic endopeptidases; however, the PepF Bacillus amyloliquefaciens oligopeptidase is a secreted protein and may facilitate the process of sporulation. Specifically, the yjbG gene encoding the homolog of the PepF1 and PepF2 oligoendopeptidases of Lactococcus lactis has been identified in Bacillus subtilis as an inhibitor of sporulation initiation when over expressed from a multicopy plasmid.
Probab=45.23 E-value=18 Score=36.55 Aligned_cols=43 Identities=19% Similarity=0.280 Sum_probs=26.2
Q ss_pred CCCcEeeeC---CCeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhcHHH
Q 016945 272 PVINAFCLP---GGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAE 318 (380)
Q Consensus 272 ~~~NAfalP---gG~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH~~e 318 (380)
+..-|||.+ ++..+|.. ....+-++ ...|+||+||.++.....
T Consensus 195 K~~gaf~~~~~~~~~p~i~~---n~~~~~~~-v~tl~HE~GHa~h~~~~~ 240 (427)
T cd06459 195 KRSGAYCTGLPPGKHPFILM---NFNGTLDD-VFTLAHELGHAFHSYLSR 240 (427)
T ss_pred CCCCeecCCCCCCCCCeEEe---cCCCChhh-HHHHHHHhhHHHHHHHHc
Confidence 345688865 34455533 33335555 466899999987765543
No 75
>PF05572 Peptidase_M43: Pregnancy-associated plasma protein-A; InterPro: IPR008754 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase M43 (cytophagalysin family, clan MA(M)), subfamily M43. The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example of this family is the pregnancy-associated plasma protein A (PAPP-A), which cleaves insulin-like growth factor (IGF) binding protein-4 (IGFBP-4), causing a dramatic reduction in its affinity for IGF-I and -II. Through this mechanism, PAPP-A is a regulator of IGF bioactivity in several systems, including the Homo sapiens ovary and the cardiovascular system [, , , ].; PDB: 3LUN_A 3LUM_B 2J83_A 2CKI_A.
Probab=44.61 E-value=12 Score=33.64 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHHHHHHh-hhcHHHHH
Q 016945 296 TDAEIATIIGHEVAHAV-ARHAAEGI 320 (380)
Q Consensus 296 nddELAaVLaHEiaHv~-~rH~~e~~ 320 (380)
+.....-+|.||+||.+ +.|+-+.-
T Consensus 65 ~~~~~g~TltHEvGH~LGL~HtF~~~ 90 (154)
T PF05572_consen 65 SQYNFGKTLTHEVGHWLGLYHTFGGG 90 (154)
T ss_dssp TTS-SSHHHHHHHHHHTT---TT---
T ss_pred CccccccchhhhhhhhhcccccccCC
Confidence 45556899999999998 67776543
No 76
>PF13402 M60-like: Peptidase M60-like family; PDB: 4FCA_A.
Probab=43.78 E-value=29 Score=33.69 Aligned_cols=51 Identities=14% Similarity=0.070 Sum_probs=29.0
Q ss_pred EEEEEeCCCCc-Eeee-CCCeEEEcHhHHhcCCCHHHH---HHHHHHHHHHHhhhc
Q 016945 265 EVLVVNEPVIN-AFCL-PGGKIVVFTGLLEHFRTDAEI---ATIIGHEVAHAVARH 315 (380)
Q Consensus 265 ~v~Vv~s~~~N-Afal-PgG~I~V~tGLL~~~~nddEL---AaVLaHEiaHv~~rH 315 (380)
...++.+.+.+ +++. .|+.|....+-.+.+-+.+.+ .=-+.||+||..+.=
T Consensus 179 ~~r~v~~v~~~~g~m~a~g~~i~~~~~~~~~~l~~~~~~~~~WG~~HE~GH~~Q~~ 234 (307)
T PF13402_consen 179 NNRFVFDVQISAGYMHASGYPIGFPPNWMNELLNPNPLRKGGWGPWHELGHNHQQG 234 (307)
T ss_dssp -EEEEEETT----SEEEETTEEEEETT--HHHH-HHHHHHH-HHHHHHHHHHH-BG
T ss_pred cceEEEeccccccceeecCCcEEeeCcHHhcccCHhHcCCCCeeehhhhhhhcCcc
Confidence 33666666544 5555 577777777766655466665 346899999998754
No 77
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=42.67 E-value=14 Score=42.12 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhhhc
Q 016945 299 EIATIIGHEVAHAVARH 315 (380)
Q Consensus 299 ELAaVLaHEiaHv~~rH 315 (380)
.++.|+|||++|..-+.
T Consensus 282 ~i~~VIaHElaHqWfGN 298 (863)
T TIGR02414 282 RIESVIAHEYFHNWTGN 298 (863)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 47899999999987654
No 78
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=42.02 E-value=15 Score=37.67 Aligned_cols=45 Identities=29% Similarity=0.330 Sum_probs=28.6
Q ss_pred CcEeeeCCCeEEEcHhHHhcC--CCHHHHHHHHHHHHHHHh---hhcHHHHHH
Q 016945 274 INAFCLPGGKIVVFTGLLEHF--RTDAEIATIIGHEVAHAV---ARHAAEGIT 321 (380)
Q Consensus 274 ~NAfalPgG~I~V~tGLL~~~--~nddELAaVLaHEiaHv~---~rH~~e~~~ 321 (380)
+-||.+-| ++.+-||..+ .+|.+||.+|=||++|.. .+|+.=+-+
T Consensus 140 V~AYSTLG---wF~DPlLSt~l~~~~~~LA~LIfHELaHq~~Yv~~dt~FNEs 189 (337)
T PF10023_consen 140 VPAYSTLG---WFDDPLLSTMLRYPDGELARLIFHELAHQTLYVKGDTAFNES 189 (337)
T ss_pred cccccccc---ccCCcccccccCCCchHHHHHHHHHHhhceeecCCCchhhHH
Confidence 55666654 2233344322 389999999999999975 455544433
No 79
>PF12315 DUF3633: Protein of unknown function (DUF3633); InterPro: IPR022087 This domain family is found in bacteria and eukaryotes, and is approximately 210 amino acids in length. The family is found in association with PF00412 from PFAM.
Probab=40.34 E-value=19 Score=34.60 Aligned_cols=17 Identities=35% Similarity=0.472 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHhhhc
Q 016945 299 EIATIIGHEVAHAVARH 315 (380)
Q Consensus 299 ELAaVLaHEiaHv~~rH 315 (380)
-..+|||||+.|+.++=
T Consensus 92 l~gsiLAHE~mHa~Lrl 108 (212)
T PF12315_consen 92 LTGSILAHELMHAWLRL 108 (212)
T ss_pred HHhhHHHHHHHHHHhcc
Confidence 36789999999998753
No 80
>PRK14015 pepN aminopeptidase N; Provisional
Probab=39.37 E-value=21 Score=40.83 Aligned_cols=24 Identities=13% Similarity=0.153 Sum_probs=18.4
Q ss_pred cceeEeecceeeeeccCCCCcccc
Q 016945 72 KRYYYVDRYHVQHFRPRGPRKWLQ 95 (380)
Q Consensus 72 ~r~y~~~~~~~~~f~~rg~~~w~~ 95 (380)
.-+|..+.+-+-+|.|.|-|+|+.
T Consensus 112 ~Gly~s~~~~~TQ~Ep~gAR~~fP 135 (875)
T PRK14015 112 EGLYRSGGMFCTQCEAEGFRRITY 135 (875)
T ss_pred eeeEEECCEEEEeccccCcCCccc
Confidence 446666556678999999999886
No 81
>PF14247 DUF4344: Domain of unknown function (DUF4344)
Probab=38.58 E-value=60 Score=31.26 Aligned_cols=52 Identities=17% Similarity=0.206 Sum_probs=36.2
Q ss_pred eEEEEEeCCCCcEeeeCC-CeEEEcHhHHhcCC--------C--------HHHHHHHHHHHHHHHhhhc
Q 016945 264 WEVLVVNEPVINAFCLPG-GKIVVFTGLLEHFR--------T--------DAEIATIIGHEVAHAVARH 315 (380)
Q Consensus 264 w~v~Vv~s~~~NAfalPg-G~I~V~tGLL~~~~--------n--------ddELAaVLaHEiaHv~~rH 315 (380)
-.|.+-.-.+.|||==|. ..|.+-..+++... + .+-+..+|-||+||.+-..
T Consensus 39 l~i~~~~CGe~nA~ydPe~~~I~iCYEf~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~HE~GHAlI~~ 107 (220)
T PF14247_consen 39 LTIRFAECGEDNAFYDPENRSITICYEFVDEILDRFAKANDPDEEYGQAAIGNVLFTLYHELGHALIDD 107 (220)
T ss_pred eEEEEeecCCCCCccCCCCCEEEECHHHHHHHHHHHHhCCcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444467899999994 78888777776432 1 2346788999999987544
No 82
>KOG1046 consensus Puromycin-sensitive aminopeptidase and related aminopeptidases [Amino acid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=37.94 E-value=31 Score=39.40 Aligned_cols=48 Identities=23% Similarity=0.219 Sum_probs=27.9
Q ss_pred EeCCCCcEeeeCC-CeEEEcHhHHhcC------CCHHHHHHHHHHHHHHHhhhcH
Q 016945 269 VNEPVINAFCLPG-GKIVVFTGLLEHF------RTDAEIATIIGHEVAHAVARHA 316 (380)
Q Consensus 269 v~s~~~NAfalPg-G~I~V~tGLL~~~------~nddELAaVLaHEiaHv~~rH~ 316 (380)
|--|+..+-|+-+ |.|..-...|-.- .+...+|.|+|||+||-.-+-.
T Consensus 286 iavPdf~~GAMENwGLvtyre~~lL~~~~~ss~~~k~~va~vIaHElAHQWFGNL 340 (882)
T KOG1046|consen 286 VAVPDFSAGAMENWGLVTYRETALLYDPQTSSSSNKQRVAEVIAHELAHQWFGNL 340 (882)
T ss_pred EecCCccccchhcCcceeeeehhhccCCCcCcHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3344555555543 4444433333211 1356699999999999877744
No 83
>cd04327 ZnMc_MMP_like_3 Zinc-dependent metalloprotease; MMP_like sub-family 3. A group of bacterial and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=37.71 E-value=24 Score=32.65 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHhhhcHH
Q 016945 298 AEIATIIGHEVAHAVARHAA 317 (380)
Q Consensus 298 dELAaVLaHEiaHv~~rH~~ 317 (380)
.+..+++-|||||++--.+.
T Consensus 90 ~~~~~~i~HElgHaLG~~HE 109 (198)
T cd04327 90 PEFSRVVLHEFGHALGFIHE 109 (198)
T ss_pred hhHHHHHHHHHHHHhcCccc
Confidence 34567999999999865443
No 84
>PF02163 Peptidase_M50: Peptidase family M50; InterPro: IPR008915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains metallopeptidases belonging to MEROPS peptidase family M50 (S2P protease family, clan MM). Members of the M50 metallopeptidase family include: mammalian sterol-regulatory element binding protein (SREBP) site 2 protease, Escherichia coli protease EcfE, stage IV sporulation protein FB and various hypothetical bacterial and eukaryotic homologues. A number of proteins are classified as non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity.; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3B4R_A 3ID4_A 3ID2_A 2ZPL_B 3ID1_A 2ZPM_A 3ID3_B 2HGA_A.
Probab=37.64 E-value=24 Score=31.91 Aligned_cols=15 Identities=40% Similarity=0.669 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhhh
Q 016945 300 IATIIGHEVAHAVAR 314 (380)
Q Consensus 300 LAaVLaHEiaHv~~r 314 (380)
+.+++.||+||...-
T Consensus 7 ~i~i~~HE~gH~~~a 21 (192)
T PF02163_consen 7 LISIVLHELGHALAA 21 (192)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred ccccccccccccccc
Confidence 467899999998753
No 85
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=36.85 E-value=28 Score=39.65 Aligned_cols=50 Identities=22% Similarity=0.210 Sum_probs=33.9
Q ss_pred EEEeCCCCcEeeeCC-CeEEEcHhHHhcC--C-C---HHHHHHHHHHHHHHHhhhcH
Q 016945 267 LVVNEPVINAFCLPG-GKIVVFTGLLEHF--R-T---DAEIATIIGHEVAHAVARHA 316 (380)
Q Consensus 267 ~Vv~s~~~NAfalPg-G~I~V~tGLL~~~--~-n---ddELAaVLaHEiaHv~~rH~ 316 (380)
.+|.-|+.|+-+|-+ |.|.+++..+-.- . + -+..+.|++||++|..-+.-
T Consensus 267 ~~V~v~~f~~GaMEN~Gl~tf~~~~ll~~~~~at~~~~~~~~~viaHElaHqWfGnl 323 (859)
T COG0308 267 DIVAVPDFSAGAMENWGLVTFREKYLLADPETATDSDYENVEEVIAHELAHQWFGNL 323 (859)
T ss_pred cEEeccCCCCccccccceeEEeeeEEeeCcccchhHHHHHHHHHHHHHHhhhcccce
Confidence 666777888888876 6777777642211 1 1 14477899999999766543
No 86
>PF01457 Peptidase_M8: Leishmanolysin This Prosite motif covers only the active site. This is family M8 in the peptidase classification. ; InterPro: IPR001577 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M8 (leishmanolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Leishmanolysin is an enzyme found in the eukaryotes including Leishmania and related parasitic protozoa []. The endopeptidase is the most abundant protein on the cell surface during the promastigote stage of the parasite, and is attached to the membrane by a glycosylphosphatidylinositol anchor []. In the amastigote form, the parasite lives in lysosomes of host macrophages, producing a form of the protease that has an acidic pH optimum []. This differs from most other metalloproteases and may be an adaptation to the environment in which the organism survives [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0007155 cell adhesion, 0016020 membrane; PDB: 1LML_A.
Probab=35.12 E-value=32 Score=36.81 Aligned_cols=56 Identities=25% Similarity=0.379 Sum_probs=29.8
Q ss_pred CCCCeEEEEEeCCC---CcEeeeC------C----CeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhcH
Q 016945 260 DGLNWEVLVVNEPV---INAFCLP------G----GKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHA 316 (380)
Q Consensus 260 ~~~~w~v~Vv~s~~---~NAfalP------g----G~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH~ 316 (380)
.+.+.-++|.-.|. .=|+|.| + |.|.+....|... ..+..--|+.|||+|++-=..
T Consensus 158 ~~~D~vlyV~~~~~~~~~~A~A~~C~~~~~~RP~~G~in~~p~~i~~~-~~~~~~~~~~HEi~HaLGFs~ 226 (521)
T PF01457_consen 158 PNADFVLYVTARPSSSSTLAWAAPCQQDSDGRPIAGVININPSYIPSF-YFQEFFRTVIHEIAHALGFSS 226 (521)
T ss_dssp ES-SEEEEEE----STT---EEEEEEE-TTS-EEEEEEE--GGG---S---HHHHHHHHHHHHHHTT-SH
T ss_pred CCccEEEEEEEeeccCCceEEEeehhhccCCCCeeEEEEEchhHccch-hhhcccceeeeeeeeeeeecc
Confidence 45566667665443 2366664 1 7888888777655 577788899999999986444
No 87
>cd06161 S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation. SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB.
Probab=33.20 E-value=30 Score=32.44 Aligned_cols=15 Identities=27% Similarity=0.494 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHhh
Q 016945 299 EIATIIGHEVAHAVA 313 (380)
Q Consensus 299 ELAaVLaHEiaHv~~ 313 (380)
=+..|+-||+||...
T Consensus 37 l~~~v~iHElgH~~~ 51 (208)
T cd06161 37 LFLSVLLHELGHALV 51 (208)
T ss_pred HHHHHHHHHHHHHHH
Confidence 356899999999864
No 88
>PF09768 Peptidase_M76: Peptidase M76 family; InterPro: IPR019165 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. Mitochondrial inner membrane protease ATP23 has two roles in the assembly of mitochondrial ATPase. Firstly, it acts as a protease that removes the N-terminal 10 residues of mitochondrial ATPase CF(0) subunit 6 (ATP6) at the intermembrane space side. Secondly, it is involved in the correct assembly of the membrane-embedded ATPase CF(0) particle, probably mediating association of ATP6 with the subunit 9 ring [, ].; GO: 0004222 metalloendopeptidase activity
Probab=32.60 E-value=39 Score=31.41 Aligned_cols=19 Identities=26% Similarity=0.541 Sum_probs=17.2
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q 016945 294 FRTDAEIATIIGHEVAHAV 312 (380)
Q Consensus 294 ~~nddELAaVLaHEiaHv~ 312 (380)
+.+.++|.-+|.|||-|+-
T Consensus 65 ~~~~~~l~~~l~HELIHay 83 (173)
T PF09768_consen 65 IRSQGHLEDTLTHELIHAY 83 (173)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 4699999999999999975
No 89
>PF13398 Peptidase_M50B: Peptidase M50B-like
Probab=32.44 E-value=31 Score=32.19 Aligned_cols=15 Identities=33% Similarity=0.525 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhh
Q 016945 299 EIATIIGHEVAHAVA 313 (380)
Q Consensus 299 ELAaVLaHEiaHv~~ 313 (380)
.+..++-||+||.+.
T Consensus 21 ~~l~t~~HE~gHal~ 35 (200)
T PF13398_consen 21 RLLVTFVHELGHALA 35 (200)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456799999999876
No 90
>PF09715 Plasmod_dom_1: Plasmodium protein of unknown function (Plasmod_dom_1); InterPro: IPR006410 These sequences represent an uncharacterised family consisting of a small number of hypothetical proteins of the malaria parasite Plasmodium falciparum (isolate 3D7).
Probab=31.52 E-value=20 Score=28.47 Aligned_cols=31 Identities=23% Similarity=0.490 Sum_probs=23.6
Q ss_pred hhhhhhhHHHHHHhhcccCCCCCCCcccccc
Q 016945 2 AYYRRAKAALDAFRNLSSKAVPKSPVQESCS 32 (380)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (380)
++++|+|+.+|+|-++-+.-+=.++++..+|
T Consensus 1 sFFKk~klvm~~fDnifidklId~~i~nk~s 31 (67)
T PF09715_consen 1 SFFKKAKLVMDIFDNIFIDKLIDNNIQNKSS 31 (67)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHccccccCCC
Confidence 4799999999999996554445667776665
No 91
>COG3824 Predicted Zn-dependent protease [General function prediction only]
Probab=30.60 E-value=35 Score=30.38 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=18.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhc
Q 016945 132 LLSKAVERQLGESQFQQMKAAFK 154 (380)
Q Consensus 132 lls~~~E~~lg~~~y~qi~~~~~ 154 (380)
-.|.+...+|+.++|.++-++|.
T Consensus 11 aps~~~fe~La~~A~d~lP~efr 33 (136)
T COG3824 11 APSLERFEELASDALDHLPQEFR 33 (136)
T ss_pred CCCHHHHHHHHHHHHHhCcHHHH
Confidence 47888888899999887766654
No 92
>PTZ00337 surface protease GP63; Provisional
Probab=29.24 E-value=1e+02 Score=33.79 Aligned_cols=52 Identities=15% Similarity=0.196 Sum_probs=34.4
Q ss_pred CCCCeEEEEEeCCC--CcEeeeCC----------CeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhh
Q 016945 260 DGLNWEVLVVNEPV--INAFCLPG----------GKIVVFTGLLEHFRTDAEIATIIGHEVAHAVAR 314 (380)
Q Consensus 260 ~~~~w~v~Vv~s~~--~NAfalPg----------G~I~V~tGLL~~~~nddELAaVLaHEiaHv~~r 314 (380)
.+.+.-++|--.|. .=|+|.|- |.|.+.-..|. +.++.--|+.|||+|++-=
T Consensus 180 ~naD~vLyV~a~p~~~~~A~A~~C~~~~~~RPi~G~in~np~~i~---~~~~~~~v~~HEi~HALGF 243 (567)
T PTZ00337 180 AGADMILYANIFPTSGPAAWAIPCFLLDDGRPFAAAVNFDPRQIA---VTNGDVRVAAHELGHALGF 243 (567)
T ss_pred cccceEEEEEeccCCCcceEEEEcccccCCCceEEEEEECHHHcc---chhHHHHHHHHHHHHHHcc
Confidence 44566666644332 33677641 67777776554 4567788999999999843
No 93
>KOG3658 consensus Tumor necrosis factor-alpha-converting enzyme (TACE/ADAM17) and related metalloproteases [Extracellular structures]
Probab=28.60 E-value=16 Score=40.60 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=26.4
Q ss_pred CCeEEEcHhHHhcCC-----CHHHHHHHHHHHHHHHhh
Q 016945 281 GGKIVVFTGLLEHFR-----TDAEIATIIGHEVAHAVA 313 (380)
Q Consensus 281 gG~I~V~tGLL~~~~-----nddELAaVLaHEiaHv~~ 313 (380)
|-+.+++|||..... -..+---|+|||+||.--
T Consensus 368 G~~~sLNtGi~T~~NYg~~Vp~kvs~lt~AHEiGHNfG 405 (764)
T KOG3658|consen 368 GKKRSLNTGISTSVNYGKRVPTKVSDLTLAHEIGHNFG 405 (764)
T ss_pred cceEEeecceeeeeecCCccCcchhheeehhhhccccC
Confidence 668999999998764 255667799999999754
No 94
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=28.42 E-value=33 Score=34.57 Aligned_cols=14 Identities=36% Similarity=0.570 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHh
Q 016945 299 EIATIIGHEVAHAV 312 (380)
Q Consensus 299 ELAaVLaHEiaHv~ 312 (380)
.+-++++|||||..
T Consensus 195 ~~P~T~~HElAHq~ 208 (318)
T PF12725_consen 195 SLPFTICHELAHQL 208 (318)
T ss_pred cccHHHHHHHHHHh
Confidence 46688999999975
No 95
>COG4324 Predicted aminopeptidase [General function prediction only]
Probab=27.49 E-value=44 Score=33.65 Aligned_cols=55 Identities=25% Similarity=0.269 Sum_probs=32.9
Q ss_pred CCeEEEEEeCCCCcEeeeCCCeEEEcHhHHhcC--CCHHHHHHHHHHHHHHHh---hhcHHHHHHH
Q 016945 262 LNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHF--RTDAEIATIIGHEVAHAV---ARHAAEGITK 322 (380)
Q Consensus 262 ~~w~v~Vv~s~~~NAfalPgG~I~V~tGLL~~~--~nddELAaVLaHEiaHv~---~rH~~e~~~~ 322 (380)
..|+|+|- .+.|+.+-| ++..-||..+ .+|.+||.+|=||++|-. .++++-.-+.
T Consensus 163 qG~DVyV~---Gv~AYSTLG---wFdDPlLstmlr~dd~~lA~LIFHELAHQk~Y~~~DtAFNEsF 222 (376)
T COG4324 163 QGLDVYVS---GVTAYSTLG---WFDDPLLSTMLRQDDTYLASLIFHELAHQKIYVNNDTAFNESF 222 (376)
T ss_pred cCCceeee---cccceeccc---ccccHHHHHHhcCChHHHHHHHHHHHhhheEeecCcchHhHHH
Confidence 34556552 355555543 3344455432 378899999999999964 4555444333
No 96
>cd05709 S2P-M50 Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of this family use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. The domain core structure appears to contain at least three transmembrane helices with a catalytic zinc atom coordinated by three conserved residues contained within the consensus sequence HExxH, together with a conserved aspartate residue. The S2P/M50 family of RIP proteases is widely distributed; in eukaryotic cells, they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum (ER) stress responses. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of sterol regulatory element-bindin
Probab=27.39 E-value=44 Score=30.02 Aligned_cols=13 Identities=31% Similarity=0.636 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHh
Q 016945 300 IATIIGHEVAHAV 312 (380)
Q Consensus 300 LAaVLaHEiaHv~ 312 (380)
+.+|.-||+||..
T Consensus 8 ~i~i~iHE~gH~~ 20 (180)
T cd05709 8 LISVTVHELGHAL 20 (180)
T ss_pred HHHHHHHHHHHHH
Confidence 3578999999987
No 97
>KOG3607 consensus Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family [Posttranslational modification, protein turnover, chaperones]
Probab=27.16 E-value=36 Score=38.17 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHHHHHHhhhcHHH
Q 016945 296 TDAEIATIIGHEVAHAVARHAAE 318 (380)
Q Consensus 296 nddELAaVLaHEiaHv~~rH~~e 318 (380)
+....|.||||||||.+-=-+.+
T Consensus 319 ~~~~~a~v~AhelgH~lGm~hD~ 341 (716)
T KOG3607|consen 319 ILLAFAVVLAHELGHNLGMIHDE 341 (716)
T ss_pred cchhHHHHHHHHHHhhcCccccc
Confidence 45668999999999987544333
No 98
>TIGR01519 plasmod_dom_1 Plasmodium falciparum uncharacterized domain. This model represents an uncharacterized domain present in roughly eight hypothetical proteins of the malaria parasite Plasmodium falciparum.
Probab=26.70 E-value=29 Score=27.83 Aligned_cols=31 Identities=19% Similarity=0.379 Sum_probs=24.0
Q ss_pred hhhhhhhHHHHHHhhcccCCCCCCCcccccc
Q 016945 2 AYYRRAKAALDAFRNLSSKAVPKSPVQESCS 32 (380)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (380)
++++|+|+.+|+|-++-+.-+=.++++...|
T Consensus 1 sFFKkaklvm~~fDnifidklid~~v~nk~S 31 (70)
T TIGR01519 1 SFFKRALLLMNIFDNIFIDKLIDNNVHNKGS 31 (70)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHccccccCCC
Confidence 4799999999999996555555677777666
No 99
>cd06164 S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation. In this subgroup, SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. It has been proposed tha
Probab=25.47 E-value=48 Score=31.67 Aligned_cols=14 Identities=29% Similarity=0.650 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhh
Q 016945 300 IATIIGHEVAHAVA 313 (380)
Q Consensus 300 LAaVLaHEiaHv~~ 313 (380)
...|+-||+||...
T Consensus 53 ~~~v~iHElgH~~~ 66 (227)
T cd06164 53 FASVLLHELGHSLV 66 (227)
T ss_pred HHHHHHHHHHHHHH
Confidence 56899999999864
No 100
>PRK06926 flagellar motor protein MotP; Reviewed
Probab=25.31 E-value=2.9e+02 Score=27.42 Aligned_cols=37 Identities=24% Similarity=0.245 Sum_probs=28.7
Q ss_pred EEcHhHHhcCC--CHHHHHHHHHHHHHHHhhhcHHHHHH
Q 016945 285 VVFTGLLEHFR--TDAEIATIIGHEVAHAVARHAAEGIT 321 (380)
Q Consensus 285 ~V~tGLL~~~~--nddELAaVLaHEiaHv~~rH~~e~~~ 321 (380)
|+-.||--..+ ++|++..+|-+|+.....||....-.
T Consensus 112 Fl~~gl~lvvDG~~~~~i~~iLe~ei~~~~~r~~~~~~v 150 (271)
T PRK06926 112 FIKKGLLLAIDGWEPETIRDIMMAEIAAMEERHRKGRRI 150 (271)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 56666654443 89999999999999999998765543
No 101
>PF06262 DUF1025: Possibl zinc metallo-peptidase; InterPro: IPR010428 This is a family of bacterial protein with undetermined function.; PDB: 3E11_A.
Probab=25.28 E-value=1.3e+02 Score=25.41 Aligned_cols=35 Identities=34% Similarity=0.570 Sum_probs=21.6
Q ss_pred eeCCCeEEEcHh-HHhcCCCHHHHHH----HHHHHHHHHhh
Q 016945 278 CLPGGKIVVFTG-LLEHFRTDAEIAT----IIGHEVAHAVA 313 (380)
Q Consensus 278 alPgG~I~V~tG-LL~~~~nddELAa----VLaHEiaHv~~ 313 (380)
.+| -.|++|.. |...+.+.+||+- |+=||+||..-
T Consensus 47 ~~p-~rI~lyR~pl~~~~~~~~eL~~~I~~tlvhEiah~fG 86 (97)
T PF06262_consen 47 GLP-DRIVLYRRPLERRARSREELAELIRDTLVHEIAHHFG 86 (97)
T ss_dssp B---EEEEEEHHHHHHT-SSHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCC-CEEEEehHHHHHHhCCHHHHHHHHHHHHHHHHHHHcC
Confidence 445 47888877 5567888887665 55667776643
No 102
>PF07225 NDUF_B4: NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4); InterPro: IPR009866 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family contains human NADH-ubiquinone oxidoreductase subunit NDUFB4 and related sequences.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0005739 mitochondrion
Probab=25.06 E-value=41 Score=29.80 Aligned_cols=37 Identities=27% Similarity=0.474 Sum_probs=23.9
Q ss_pred cce-eEeecceeeeeccCCCCccccCCchhHHHHHHHHHHHHHHHh
Q 016945 72 KRY-YYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLYL 116 (380)
Q Consensus 72 ~r~-y~~~~~~~~~f~~rg~~~w~~~~r~~~~~~~~g~g~~~~~y~ 116 (380)
-|+ |.-.-..|.||+|. |++.+++++.|.+.++++|+
T Consensus 62 ~Rw~~a~~~~~y~~FRpT--------Pktsllg~~~~v~P~i~~~~ 99 (125)
T PF07225_consen 62 QRWAYARAVNIYEYFRPT--------PKTSLLGLGFGVVPLIFYYY 99 (125)
T ss_pred HHHHHHHHhCcccccccC--------chHHHHHHHHHHHHHHHHHh
Confidence 467 55444789999887 47777776666554444443
No 103
>TIGR03296 M6dom_TIGR03296 M6 family metalloprotease domain. This model describes a metalloproteinase domain, with a characteristic HExxH motif. Examples of this domain are found in proteins in the family of immune inhibitor A, which cleaves antibacterial peptides, and in other, only distantly related proteases. This model is built to be broader and more inclusive than Pfam model pfam05547.
Probab=23.91 E-value=18 Score=35.60 Aligned_cols=12 Identities=33% Similarity=0.722 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHh
Q 016945 301 ATIIGHEVAHAV 312 (380)
Q Consensus 301 AaVLaHEiaHv~ 312 (380)
..|++||++|.+
T Consensus 166 igv~~HE~gH~l 177 (286)
T TIGR03296 166 VGVIAHELGHDL 177 (286)
T ss_pred eeeeehhhhccc
Confidence 589999999954
No 104
>PF01432 Peptidase_M3: Peptidase family M3 This Prosite motif covers only the active site. This family belongs to family M3 of the peptidase classification.; InterPro: IPR001567 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M3 (clan MA(E)), subfamilies M3A and M3B. The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. The Thimet oligopeptidase family, is a large family of archaeal, bacterial and eukaryotic oligopeptidases that cleave medium sized peptides. The group contains: mitochondrial intermediate peptidase (3.4.24.59 from EC) Neurolysin, mitochondrial precursor, (3.4.24.16 from EC) Thimet oligopeptidase (3.4.24.15 from EC) Dipeptidyl carboxypeptidase (3.4.15.5 from EC) Oligopeptidase A (3.4.24.70 from EC) Oligoendopeptidase F ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2QR4_B 3CE2_A 1Y79_1 2H1J_A 2H1N_A 2O36_A 1S4B_P 2O3E_A 1I1I_P.
Probab=23.79 E-value=45 Score=34.48 Aligned_cols=18 Identities=22% Similarity=0.436 Sum_probs=14.6
Q ss_pred CHHHHHHHHHHHHHHHhhh
Q 016945 296 TDAEIATIIGHEVAHAVAR 314 (380)
Q Consensus 296 nddELAaVLaHEiaHv~~r 314 (380)
+-+++ ..|+||+||.++.
T Consensus 239 ~~~~v-~tLfHE~GHa~H~ 256 (458)
T PF01432_consen 239 SHDDV-ETLFHEFGHAMHS 256 (458)
T ss_dssp SHHHH-HHHHHHHHHHHHH
T ss_pred ChhhH-HHHHHHHhHHHHH
Confidence 66677 7899999998864
No 105
>cd06160 S2P-M50_like_2 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains.
Probab=23.73 E-value=56 Score=30.35 Aligned_cols=14 Identities=36% Similarity=0.432 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHhh
Q 016945 300 IATIIGHEVAHAVA 313 (380)
Q Consensus 300 LAaVLaHEiaHv~~ 313 (380)
+..+..||+||...
T Consensus 41 ~~~l~iHElgH~~~ 54 (183)
T cd06160 41 LAILGIHEMGHYLA 54 (183)
T ss_pred HHHHHHHHHHHHHH
Confidence 56788999999864
No 106
>PF01400 Astacin: Astacin (Peptidase family M12A) This Prosite motif covers only the active site.; InterPro: IPR001506 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12A (astacin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The astacin () family of metalloendopeptidases encompasses a range of proteins found in hydra to humans, in mature and developmental systems []. Their functions include activation of growth factors, degradation of polypeptides, and processing of extracellular proteins []. The proteins are synthesised with N-terminal signal and pro-enzyme sequences, and many contain multiple domains C-terminal to the protease domain. They are either secreted from cells, or are associated with the plasma membrane. The astacin molecule adopts a kidney shape, with a deep active-site cleft between its N- and C-terminal domains []. The zinc ion, which lies at the bottom of the cleft, exhibits a unique penta-coordinated mode of binding, involving 3 histidine residues, a tyrosine and a water molecule (which is also bound to the carboxylate side chain of Glu93) []. The N-terminal domain comprises 2 alpha-helices and a 5-stranded beta-sheet. The overall topology of this domain is shared by the archetypal zinc-endopeptidase thermolysin. Astacin protease domains also share common features with serralysins, matrix metalloendopeptidases, and snake venom proteases; they cleave peptide bonds in polypeptides such as insulin B chain and bradykinin, and in proteins such as casein and gelatin; and they have arylamidase activity [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3LQB_A 3EDH_A 3EDG_A 3EDI_A 1IAE_A 1IAB_A 1IAA_A 1AST_A 1IAC_A 1QJJ_A ....
Probab=23.66 E-value=50 Score=30.53 Aligned_cols=17 Identities=29% Similarity=0.311 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhhhcHH
Q 016945 301 ATIIGHEVAHAVARHAA 317 (380)
Q Consensus 301 AaVLaHEiaHv~~rH~~ 317 (380)
.+++.||++|++--++.
T Consensus 80 ~~~i~HEl~HaLG~~HE 96 (191)
T PF01400_consen 80 VGTILHELGHALGFWHE 96 (191)
T ss_dssp HHHHHHHHHHHHTB--G
T ss_pred ccchHHHHHHHHhhhhh
Confidence 46899999999865443
No 107
>PF05960 DUF885: Bacterial protein of unknown function (DUF885); InterPro: IPR010281 This family consists of hypothetical bacterial proteins.; PDB: 3O0Y_B 3U24_A 3IUK_A.
Probab=23.09 E-value=4.2e+02 Score=27.97 Aligned_cols=55 Identities=20% Similarity=0.218 Sum_probs=34.2
Q ss_pred CCCCCCeEEEEEeCC----CCcEeeeCC--------CeEEEcHhHHhcCCCHHHHHHHHHHHH--HHHhh
Q 016945 258 HLDGLNWEVLVVNEP----VINAFCLPG--------GKIVVFTGLLEHFRTDAEIATIIGHEV--AHAVA 313 (380)
Q Consensus 258 ~~~~~~w~v~Vv~s~----~~NAfalPg--------G~I~V~tGLL~~~~nddELAaVLaHEi--aHv~~ 313 (380)
.++..+++|.-+..- .+-||..|+ |.++|+..-+... +.-++.++++||. ||..+
T Consensus 319 ~~p~~~~~v~~~p~~~~~~~~~a~y~~~~~~d~~~~~~~~in~~~~~~~-~~~~~~~~~~HE~~PGHh~Q 387 (549)
T PF05960_consen 319 TIPDQPYEVRPVPPFLEPSAPPAYYQPPPPIDGSRPGRFYINPPDLRSR-NKYSLYTTAAHEAYPGHHLQ 387 (549)
T ss_dssp --TCS-EEEEEEECCCHTTS-SEEEEE--TTTSSS-EEEEE--STHHCC-ECTCHHHHHHHHSTTTHHHH
T ss_pred cCCCCCCceeecCccccCcCCCCcccCCCCCCCCCCcEEEEeCCCcccc-ChhhHHHHHHhhcCCcHHHH
Confidence 345677888888763 244777773 7888888554433 6678899999998 56544
No 108
>cd04281 ZnMc_BMP1_TLD Zinc-dependent metalloprotease; BMP1/TLD-like subfamily. BMP1 (Bone morphogenetic protein 1) and TLD (tolloid)-like metalloproteases play vital roles in extracellular matrix formation, by cleaving precursor proteins such as enzymes, structural proteins, and proteins involved in the mineralization of the extracellular matrix. The drosophila protein tolloid and its Xenopus homologue xolloid cleave and inactivate Sog and chordin, respectively, which are inhibitors of Dpp (the Drosophila decapentaplegic gene product) and its homologue BMP4, involved in dorso-ventral patterning.
Probab=22.56 E-value=44 Score=31.59 Aligned_cols=18 Identities=22% Similarity=0.327 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhhhcHHH
Q 016945 301 ATIIGHEVAHAVARHAAE 318 (380)
Q Consensus 301 AaVLaHEiaHv~~rH~~e 318 (380)
-+++.|||+|++-=++..
T Consensus 88 ~Gti~HEl~HaLGf~HEh 105 (200)
T cd04281 88 FGIVVHELGHVIGFWHEH 105 (200)
T ss_pred CchHHHHHHHHhcCcchh
Confidence 379999999998765543
No 109
>PTZ00257 Glycoprotein GP63 (leishmanolysin); Provisional
Probab=22.16 E-value=1.9e+02 Score=32.22 Aligned_cols=55 Identities=22% Similarity=0.327 Sum_probs=34.9
Q ss_pred CCCCeEEEEEeCCC---CcEeeeC-----C-----CeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhc
Q 016945 260 DGLNWEVLVVNEPV---INAFCLP-----G-----GKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARH 315 (380)
Q Consensus 260 ~~~~w~v~Vv~s~~---~NAfalP-----g-----G~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH 315 (380)
.+.+.-++|.-.|. .=|+|.+ . |.|.+.---+.. ..+++.--|+.|||+|++--.
T Consensus 204 ~naD~vLYVta~P~~~~~lA~A~~C~~~~d~RPi~G~iNinp~~i~s-~~~~~~~rv~~HEi~HALGFS 271 (622)
T PTZ00257 204 SNADFVLYVASVPSEPGVLAWATTCQVFSDDHPAVGVMNIPAANIVS-RYDQGTTRTVTHEVAHALGFS 271 (622)
T ss_pred cccCEEEEEEEecCCCCeeEEEEEeccccCCCceEEEEeeCHHHCCC-ccchHHHHHHHHHHHHHhcCC
Confidence 45566777765443 2266663 1 667776554432 234567899999999998643
No 110
>cd04283 ZnMc_hatching_enzyme Zinc-dependent metalloprotease, hatching enzyme-like subfamily. Hatching enzymes are secreted by teleost embryos to digest the egg envelope or chorion. In some teleosts, the hatching enzyme may be a system consisting of two evolutionary related metalloproteases, high choriolytic enzyme and low choriolytic enzyme (HCE and LCE), which may have different substrate specificities and cooperatively digest the chorion.
Probab=22.01 E-value=46 Score=31.01 Aligned_cols=17 Identities=35% Similarity=0.397 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhhhcHH
Q 016945 301 ATIIGHEVAHAVARHAA 317 (380)
Q Consensus 301 AaVLaHEiaHv~~rH~~ 317 (380)
-+++.||++|++-=.+.
T Consensus 78 ~G~i~HEl~HaLG~~HE 94 (182)
T cd04283 78 KGIIQHELLHALGFYHE 94 (182)
T ss_pred cchHHHHHHHHhCCccc
Confidence 37999999999865443
No 111
>cd06159 S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group appears to be limited to Archaeal S2P/M50s homologs with additional putative N-terminal transmembrane spanning regions, relative to the core protein, and either one or two PDZ domains present.
Probab=21.32 E-value=64 Score=31.75 Aligned_cols=33 Identities=27% Similarity=0.602 Sum_probs=20.0
Q ss_pred cEeeeCCCeEEE--cHhHHhcCCCHHHHHHHHHHHHHHHhh
Q 016945 275 NAFCLPGGKIVV--FTGLLEHFRTDAEIATIIGHEVAHAVA 313 (380)
Q Consensus 275 NAfalPgG~I~V--~tGLL~~~~nddELAaVLaHEiaHv~~ 313 (380)
|.-.+||..+++ ..+++ .=+.+|+-||+||...
T Consensus 97 ~~~~ipGv~~~i~~~~~~i------aL~isv~iHElgHa~~ 131 (263)
T cd06159 97 NVLVIPGVNIFIPLPYGII------ALVVGVVVHELSHGIL 131 (263)
T ss_pred eeeccCCcchHHHHHHHHH------HHHHHHHHHHHHHHHH
Confidence 344567766543 12222 2357799999999864
No 112
>COG4900 Predicted metallopeptidase [General function prediction only]
Probab=20.95 E-value=79 Score=27.88 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=18.8
Q ss_pred EcHhHHhcCCCHHHHHHHHHHHHHHHhhh
Q 016945 286 VFTGLLEHFRTDAEIATIIGHEVAHAVAR 314 (380)
Q Consensus 286 V~tGLL~~~~nddELAaVLaHEiaHv~~r 314 (380)
+-+-=++.+ +-||---|+.||+.|+-..
T Consensus 67 l~sekF~rL-s~~ekvKviiHEllHIP~t 94 (133)
T COG4900 67 LLSEKFKRL-SCAEKVKVIIHELLHIPAT 94 (133)
T ss_pred eehhhcCCC-ChHHHHHHHHHHHhcCccc
Confidence 334445555 5566667899999998653
No 113
>cd06455 M3A_TOP Peptidase M3 Thimet oligopeptidase (TOP; PZ-peptidase; endo-oligopeptidase A; endopeptidase 24.15; soluble metallo-endopeptidase; EC 3.4.24.15) family also includes neurolysin (endopeptidase 24.16, microsomal endopeptidase, mitochondrial oligopeptidase M, neurotensin endopeptidase, soluble angiotensin II-binding protein, thimet oligopeptidase II) which hydrolyzes oligopeptides such as neurotensin, bradykinin and dynorphin A. TOP and neurolysin are neuropeptidases expressed abundantly in the testis, but also found in the liver, lung and kidney. They are involved in the metabolism of neuropeptides under 20 amino acid residues long and cleave most bioactive peptides at the same sites, but recognize different positions on some naturally occurring and synthetic peptides; they cleave at distinct sites on the 13-residue bioactive peptide neurotensin, which modulates central dopaminergic and cholinergic circuits. TOP has been shown to degrade peptides released by the proteasom
Probab=20.87 E-value=60 Score=34.13 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHhhhcH
Q 016945 297 DAEIATIIGHEVAHAVARHA 316 (380)
Q Consensus 297 ddELAaVLaHEiaHv~~rH~ 316 (380)
-+++ ..|+||+||.++...
T Consensus 261 ~~~V-~TLfHEfGHalH~~l 279 (472)
T cd06455 261 HDEV-ETFFHEFGHVIHHLL 279 (472)
T ss_pred HHHH-HHHHHHHHHHHHHHh
Confidence 4555 568999999997543
No 114
>TIGR02290 M3_fam_3 oligoendopeptidase, pepF/M3 family. The M3 family of metallopeptidases contains several distinct clades. Oligoendopeptidase F as characterized in Lactococcus, the functionally equivalent oligoendopeptidase B of group B Streptococcus, and closely related sequences are described by TIGR00181. The present family is quite similar but forms a distinct clade, and a number of species have one member of each. A greater sequence difference separates members of TIGR02289, probable oligoendopeptidases of the M3 family that probably should not be designated PepF.
Probab=20.77 E-value=53 Score=35.43 Aligned_cols=41 Identities=17% Similarity=0.284 Sum_probs=23.8
Q ss_pred eCCCCcEeeeC--CC---eEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhcH
Q 016945 270 NEPVINAFCLP--GG---KIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHA 316 (380)
Q Consensus 270 ~s~~~NAfalP--gG---~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH~ 316 (380)
+.+...|||.+ ++ .|+++ .-.+-+++ ..|+||+||.++...
T Consensus 346 ~gK~~Ga~~~~~~~~~~p~i~~N-----~~~~~~~v-~TL~HE~GHa~H~~l 391 (587)
T TIGR02290 346 PGKRGGAFCTGFPPSKEPRVLMN-----YDGSRRDV-STLAHELGHAYHSEL 391 (587)
T ss_pred CCCCCCcccCCCCCCCCCEEEEe-----cCCCchhH-HHHHHHhhHHHHHHH
Confidence 34456788854 22 23332 22233443 568999999997543
No 115
>COG1164 Oligoendopeptidase F [Amino acid transport and metabolism]
Probab=20.73 E-value=50 Score=36.19 Aligned_cols=52 Identities=15% Similarity=0.129 Sum_probs=31.8
Q ss_pred EEEEeCCCCcEeeeCC---CeEEEcHhHHhcCCCHHHHHHHHHHHHHHHhhhcHHHHHH
Q 016945 266 VLVVNEPVINAFCLPG---GKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGIT 321 (380)
Q Consensus 266 v~Vv~s~~~NAfalPg---G~I~V~tGLL~~~~nddELAaVLaHEiaHv~~rH~~e~~~ 321 (380)
+..-+.+.+-|||.+. +..|| ||....+.+.+ .+|+||+||..+.....+-.
T Consensus 347 ~~~~~gKrsGaYs~~~~~~~~p~I---lmN~~gt~~dV-~TLaHElGHs~Hs~~s~~~q 401 (598)
T COG1164 347 VYPRKGKRSGAYSIGFYKGDHPFI---LMNYDGTLRDV-FTLAHELGHSVHSYFSRKHQ 401 (598)
T ss_pred ccCCCCCCCCcccCCCCCCCCCeE---EEeCCCchhHH-HHHHHHccHHHHHHHHhccC
Confidence 3333445678999863 45555 23333333333 68999999999876655443
Done!