BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016946
(380 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 33/53 (62%)
Query: 326 LHVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVVN 378
L++ + C +C E+++ DE+G C H+FH +C+ +WL + CP+C V+
Sbjct: 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 331 KCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVVNR 379
+C +C+E+Y + + +L C H FH CI WL Q ++CPVC+ ++ +
Sbjct: 17 ECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 331 KCTICQEEYEADDEMGKLD-CGHSFHIQCIKQWLSQKNACPVCKAAVV 377
+C +C E E +E L CGH FH +C+ WL + CP+C+ VV
Sbjct: 7 ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 332 CTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKA 374
C +C ++E+ + L C H FH +C+ +WL CP+C+A
Sbjct: 26 CVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRA 68
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 331 KCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAV 376
KCTIC E +++ +L C H FH C+ QWL CP+C+ +
Sbjct: 16 KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 61
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 332 CTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCK 373
C IC EY D +L C H FH C+ WL + CPVC+
Sbjct: 43 CPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCR 84
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 19/110 (17%)
Query: 283 YEELLELGDRIGYVSTGLKEDEIGRCLR-KLKNS--------IINDLSSHLPLHVDK--- 330
Y E+++ G I VST +CLR LKN+ IN H P+++
Sbjct: 17 YSEIVQNGRLI--VSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYH-PIYIGSGTV 73
Query: 331 KCTICQEEYEADDEMGKL----DCGHSFHIQCIKQWLSQKNACPVCKAAV 376
C IC + Y + G+L +CGH F QC++ L N CP C+ +
Sbjct: 74 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 123
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 332 CTICQEEYEADDEMGKL----DCGHSFHIQCIKQWLSQKNACPVCKAAV 376
C IC + Y + G+L +CGH F QC++ L N CP C+ +
Sbjct: 10 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 58
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 319 DLSSHLP--LHVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAV 376
++ SH+ L + +C IC E + E L+C HSF CI +W+ +K CP+C+ +
Sbjct: 41 EVLSHMNDVLENELQCIICSEYF---IEAVTLNCAHSFCSYCINEWMKRKIECPICRKDI 97
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 319 DLSSHLP--LHVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAV 376
++ SH+ L + +C IC E + E L+C HSF CI +W+ +K CP+C+ +
Sbjct: 41 EVLSHMNDVLENELQCIICSEYF---IEAVTLNCAHSFCSYCINEWMKRKIECPICRKDI 97
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 319 DLSSHLP--LHVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAV 376
++ SH+ L + +C IC E + E L+C HSF CI +W+ +K CP+C+ +
Sbjct: 52 EVLSHMNDVLENELQCIICSEYF---IEAVTLNCAHSFCSYCINEWMKRKIECPICRKDI 108
Query: 377 VNR 379
++
Sbjct: 109 KSK 111
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 332 CTICQEEYEADDEMGKL----DCGHSFHIQCIKQWLSQKNACPVCKAAV 376
C IC + Y + G+L +CGH F QC++ L N CP C+ +
Sbjct: 13 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 61
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 328 VDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAV 376
V ++C IC E+ + L C H+F CI +W+ Q CP+CK V
Sbjct: 4 VAERCPICLED--PSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 332 CTICQEEYEADDEMGKL----DCGHSFHIQCIKQWLSQKNACPVCKAAV 376
C IC + Y + G+L +CGH F QC++ L N CP C+ +
Sbjct: 18 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 332 CTICQEEYEADDEMGKL----DCGHSFHIQCIKQWLSQKNACPVCKAAV 376
C IC + Y + G+L +CGH F QC++ L N CP C+ +
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 54
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 319 DLSSHLPLHVDKKCTICQEEYEADDEMGKL-DCGHSFHIQCIKQWLSQKNACPVCK 373
D + + V C CQ E + +D + +C HSFH C+ W+ Q N CP+C+
Sbjct: 16 DTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQ 71
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 34.3 bits (77), Expect = 0.11, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 350 CGHSFHIQCIKQWLSQKNACPV 371
C H+FH CI +WL + CP+
Sbjct: 57 CNHAFHFHCISRWLKTRQVCPL 78
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 350 CGHSFHIQCIKQWLSQKNACPV 371
C H+FH CI +WL + CP+
Sbjct: 75 CNHAFHFHCISRWLKTRQVCPL 96
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 350 CGHSFHIQCIKQWLSQKNACPV 371
C H+FH CI +WL + CP+
Sbjct: 84 CNHAFHFHCISRWLKTRQVCPL 105
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 350 CGHSFHIQCIKQWLSQKNACPV 371
C H+FH CI +WL + CP+
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 350 CGHSFHIQCIKQWLSQKNACPV 371
C H+FH CI +WL + CP+
Sbjct: 67 CNHAFHFHCISRWLKTRQVCPL 88
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 350 CGHSFHIQCIKQWLSQKNACPV 371
C H+FH CI +WL + CP+
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 350 CGHSFHIQCIKQWLSQKNACPV 371
C H+FH CI +WL + CP+
Sbjct: 65 CNHAFHFHCISRWLKTRQVCPL 86
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 326 LHVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQW---LSQKNACPVC 372
L V+ C++C E + E ++CGH+F CI +W L + CPVC
Sbjct: 12 LQVEASCSVCLEYLK---EPVIIECGHNFCKACITRWWEDLERDFPCPVC 58
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 32.3 bits (72), Expect = 0.40, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 331 KCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAV 376
+C IC E + M C H++ CI+++LS K CP C V
Sbjct: 24 RCGICFEYFNI--AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTV 67
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 32.0 bits (71), Expect = 0.64, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 8/60 (13%)
Query: 317 INDLSSHLPLHVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAV 376
I +L+ HL C +C + D ++C HSF CI ++L CP+C V
Sbjct: 5 ITELNPHL------MCVLCGGYF--IDATTIIECLHSFCKTCIVRYLETSKYCPICDVQV 56
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 31.6 bits (70), Expect = 0.75, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 8/60 (13%)
Query: 317 INDLSSHLPLHVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAV 376
I +L+ HL C +C + D ++C HSF CI ++L CP+C V
Sbjct: 9 ITELNPHL------MCVLCGGYF--IDATTIIECLHSFCKTCIVRYLETSKYCPICDVQV 60
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 31.6 bits (70), Expect = 0.78, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 8/60 (13%)
Query: 317 INDLSSHLPLHVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAV 376
I +L+ HL C +C + D ++C HSF CI ++L CP+C V
Sbjct: 9 ITELNPHL------MCVLCGGYF--IDATTIIECLHSFCKTCIVRYLETSKYCPICDVQV 60
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 348 LDCGHSFHIQCIKQWLSQKNACPVCK 373
L C HSF +CI +W + CP+C+
Sbjct: 30 LPCAHSFCQKCIDKWSDRHRNCPICR 55
>pdb|2JZF|A Chain A, Nmr Conformer Closest To The Mean Coordinates Of The
Domain 513-651 Of The Sars-Cov Nonstructural Protein
Nsp3
pdb|2RNK|A Chain A, Nmr Structure Of The Domain 513-651 Of The Sars-Cov
Nonstructural Protein Nsp3
Length = 143
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 293 IGYVSTGLKEDEIGRCLRKLKNSIINDLSS 322
IGYV+ G +E RC+R LK + +SS
Sbjct: 100 IGYVTHGFNLEEAARCMRSLKAPAVVSVSS 129
>pdb|2JZD|A Chain A, Nmr Structure Of The Domain 527-651 Of The Sars-Cov
Nonstructural Protein Nsp3
pdb|2JZE|A Chain A, Nmr Structure Of The Domain 527-651 Of The Sars-Cov
Nonstructural Protein Nsp3, Single Conformer Closest To
The Mean Coordinates Of An Ensemble Of Twenty Energy
Minimized Conformers
Length = 129
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 293 IGYVSTGLKEDEIGRCLRKLKNSIINDLSS 322
IGYV+ G +E RC+R LK + +SS
Sbjct: 86 IGYVTHGFNLEEAARCMRSLKAPAVVSVSS 115
>pdb|2KQV|A Chain A, Sars Coronavirus-Unique Domain (Sud): Three-Domain
Molecular Architecture In Solution And Rna Binding. I:
Structure Of The Sud-M Domain Of Sud-Mc
pdb|2KQW|A Chain A, Sars Coronavirus-Unique Domain (Sud): Three-Domain
Molecular Architecture In Solution And Rna Binding. Ii:
Structure Of The Sud-C Domain Of Sud-Mc
Length = 198
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 293 IGYVSTGLKEDEIGRCLRKLKNSIINDLSS 322
IGYV+ G +E RC+R LK + +SS
Sbjct: 86 IGYVTHGFNLEEAARCMRSLKAPAVVSVSS 115
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 332 CTICQEEYEADDEMGK-LDCGHSFHIQCIKQWLSQKNACPVCKA 374
C IC E+ + L CGH H C ++ L + CP+C
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSG 51
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 30.0 bits (66), Expect = 2.3, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 348 LDCGHSFHIQCIKQWLSQKNA---CPVCKAAV 376
+DCGH+F ++CI Q CP+CK +V
Sbjct: 36 IDCGHNFCLKCITQIGETSCGFFKCPLCKTSV 67
>pdb|2YT5|A Chain A, Solution Structure Of The Phd Domain Of Metal-Response
Element-Binding Transcription Factor 2
Length = 66
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 332 CTICQEEY-EADDEMGKLD-CGHSFHIQC 358
CTICQEEY EA +EM D CG +H C
Sbjct: 9 CTICQEEYSEAPNEMVICDKCGQGYHQLC 37
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 329 DKKCTICQEEYEADDEMGK-LDCGHSFHIQCIKQWLSQKNACPVC 372
+ C IC E+ + L CGH H C ++ L + CP+C
Sbjct: 5 QQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|3L5A|A Chain A, Crystal Structure Of A Probable Nadh-Dependent Flavin
Oxidoreductase From Staphylococcus Aureus
Length = 419
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 261 MGGRVDSHDHFSDWRLDVDNMSYEELLELGDRIGYVSTGLKEDEIGRCLRKLKNSIINDL 320
+G +D + DW DV N+ Y + G I ++ D GR + ++ + L
Sbjct: 259 LGYTIDEFNQLIDWVXDVSNIQYLAIASWGRHIYQNTSRTPGDHFGRPVNQI---VYEHL 315
Query: 321 SSHLPL 326
+ +PL
Sbjct: 316 AGRIPL 321
>pdb|2W2G|A Chain A, Human Sars Coronavirus Unique Domain
pdb|2W2G|B Chain B, Human Sars Coronavirus Unique Domain
pdb|2WCT|A Chain A, Human Sars Coronavirus Unique Domain (Triclinic Form)
pdb|2WCT|B Chain B, Human Sars Coronavirus Unique Domain (Triclinic Form)
pdb|2WCT|C Chain C, Human Sars Coronavirus Unique Domain (Triclinic Form)
pdb|2WCT|D Chain D, Human Sars Coronavirus Unique Domain (Triclinic Form)
Length = 264
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 293 IGYVSTGLKEDEIGRCLRKLKNSIINDLSS 322
IGYV+ G +E RC+R L+ + +SS
Sbjct: 220 IGYVTHGFNLEEAARCMRSLRAPAVVSVSS 249
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 28.5 bits (62), Expect = 6.5, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 332 CTICQEEYEADDEMGKLDCGHSFHIQCIKQWL-SQKNACPVCKAAV 376
C IC E D ++ CGH C+ W S+ CP C+ +
Sbjct: 27 CKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 69
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 28.5 bits (62), Expect = 6.8, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 332 CTICQEEYEADDEMGKLDCGHSFHIQCIKQWL-SQKNACPVCKAAV 376
C IC E D ++ CGH C+ W S+ CP C+ +
Sbjct: 30 CKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 72
>pdb|1FJR|A Chain A, Crystal Structure Of The Ectodomain Of Methuselah
pdb|1FJR|B Chain B, Crystal Structure Of The Ectodomain Of Methuselah
Length = 195
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 268 HDHFSDWRLDVDNMSYEELLELGDRIGYVSTGLKEDEIGRCLRKLKNSII 317
HDH D + DNMS EEL EL +++ L + + R R KN +I
Sbjct: 73 HDHIMDNGVCYDNMSDEELAELD---PFLNVTLDDGSVSR--RHFKNELI 117
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 28.1 bits (61), Expect = 8.0, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 331 KCTICQEEYEADDEMGKL-DCGHSFHIQCIKQWLSQK---NACPVC 372
+C IC E + + KL CGH+ QC+++ L+ CP C
Sbjct: 17 ECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFC 62
>pdb|2PZX|A Chain A, Structure Of The Methuselah Ectodomain With Peptide
Inhibitor
pdb|2PZX|B Chain B, Structure Of The Methuselah Ectodomain With Peptide
Inhibitor
pdb|2PZX|C Chain C, Structure Of The Methuselah Ectodomain With Peptide
Inhibitor
pdb|2PZX|D Chain D, Structure Of The Methuselah Ectodomain With Peptide
Inhibitor
Length = 188
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 268 HDHFSDWRLDVDNMSYEELLELGDRIGYVSTGLKEDEIGRCLRKLKNSII 317
HDH D + DNMS EEL EL +++ L + + R R KN +I
Sbjct: 73 HDHIMDNGVCYDNMSDEELAELD---PFLNVTLDDGSVSR--RHFKNELI 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,047,957
Number of Sequences: 62578
Number of extensions: 267366
Number of successful extensions: 641
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 604
Number of HSP's gapped (non-prelim): 55
length of query: 380
length of database: 14,973,337
effective HSP length: 101
effective length of query: 279
effective length of database: 8,652,959
effective search space: 2414175561
effective search space used: 2414175561
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)