BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016946
(380 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LT17|BBR_ARATH E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana
GN=BBR PE=2 SV=1
Length = 340
Score = 78.2 bits (191), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 64/129 (49%), Gaps = 7/129 (5%)
Query: 249 LAEMMMLQNSLLMGGRVDSHDHFSDW-RLDVDNMSYEELLELGDRIGYVSTGLKEDEIGR 307
L+ + L N ++ +SH W +D D +SYEELL LGD +G S GL D I
Sbjct: 210 LSALSGLANRVVEDLEDESHTSQDAWDEMDPDELSYEELLALGDIVGTESRGLSADTIAS 269
Query: 308 CLRKLKNSIINDLSSHLPLHVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKN 367
K N ++ + C IC+ +YE D+++ L C HS+H +CI WL
Sbjct: 270 LPSKRYKEGDNQNGTN------ESCVICRLDYEDDEDLILLPCKHSYHSECINNWLKINK 323
Query: 368 ACPVCKAAV 376
CPVC A V
Sbjct: 324 VCPVCSAEV 332
>sp|Q8L649|BB_ARATH E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana GN=BB PE=1
SV=1
Length = 248
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Query: 276 LDVDNMSYEELLELGDRIGYVSTGLKEDEIGRCLRKLKNSIINDLSSHLPLHVDKKCTIC 335
+D D M+YEEL+ELG+ +G S GL + E+ L K + S ++C IC
Sbjct: 145 IDPDTMTYEELVELGEAVGTESRGLSQ-ELIETLPTKKYKFGSIFSRK---RAGERCVIC 200
Query: 336 QEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVV 377
Q +Y+ + L C H +H +CI +WLS CPVC + V
Sbjct: 201 QLKYKIGERQMNLPCKHVYHSECISKWLSINKVCPVCNSEVF 242
>sp|Q99ML9|RN111_MOUSE E3 ubiquitin-protein ligase Arkadia OS=Mus musculus GN=Rnf111 PE=1
SV=1
Length = 989
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Query: 283 YEELLELGDRIGYVSTGLKEDEIGRCLRKLK-NSIINDLSSHLPLHVDK----------- 330
+EEL+ L +R+G V+ G + I RC K + D S LH +
Sbjct: 875 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVTTDWFSQRKLHCKQDGEEGTEEDTE 934
Query: 331 -KCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAV 376
KCTIC E +++ +L C H FH C+ QWL CP+C+ +
Sbjct: 935 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 981
>sp|Q6ZNA4|RN111_HUMAN E3 ubiquitin-protein ligase Arkadia OS=Homo sapiens GN=RNF111 PE=1
SV=3
Length = 994
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Query: 283 YEELLELGDRIGYVSTGLKEDEIGRCLRKLK-NSIINDLSSHLPLHVDK----------- 330
+EEL+ L +R+G V+ G + I RC K + D S LH +
Sbjct: 880 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVTTDWFSQRKLHCKQDGEEGTEEDTE 939
Query: 331 -KCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAV 376
KCTIC E +++ +L C H FH C+ QWL CP+C+ +
Sbjct: 940 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 986
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%)
Query: 330 KKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVV 377
K C++C EY +++ KL C H +HI CI +WLS+ + CP+C+ AV+
Sbjct: 566 KTCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICRRAVL 613
>sp|E9QAU8|RN165_MOUSE RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1
Length = 347
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 51/101 (50%), Gaps = 6/101 (5%)
Query: 282 SYEELLELGDRIGYVSTGLKEDEIGRCL--RKLKNSIINDLSSHL----PLHVDKKCTIC 335
SYEELL+L DR+G V+ G ++ I R K K D D+KCTIC
Sbjct: 239 SYEELLQLEDRLGNVTRGAVQNTIERFTFPHKYKKRRPQDSKGKKDEGEESDTDEKCTIC 298
Query: 336 QEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAV 376
E +++ +L C H FH C+ QWL+ CP+C+ +
Sbjct: 299 LSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRVDI 339
>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b
PE=2 SV=1
Length = 757
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%)
Query: 330 KKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVV 377
K C++C EY +++ KL C H +HI CI +WLS+ + CP+C+ AV+
Sbjct: 701 KTCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICRRAVL 748
>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
Length = 600
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 34/49 (69%)
Query: 330 KKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVVN 378
K C++C EY +++ KL C H +H+ CI +WLS+ + CP+C+ AV++
Sbjct: 544 KTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVLS 592
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 33/48 (68%)
Query: 330 KKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVV 377
K C++C EY +++ KL C H +H+ CI +WLS+ + CP+C+ AV+
Sbjct: 568 KTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVL 615
>sp|Q6ZSG1|RN165_HUMAN RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1
Length = 346
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 51/101 (50%), Gaps = 6/101 (5%)
Query: 282 SYEELLELGDRIGYVSTGLKEDEIGRCL--RKLKNSIINDLSSHL----PLHVDKKCTIC 335
SYEELL+L DR+G V+ G ++ I R K K D D+KCTIC
Sbjct: 238 SYEELLQLEDRLGNVTRGAVQNTIERFTFPHKYKKRRPQDGKGKKDEGEESDTDEKCTIC 297
Query: 336 QEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAV 376
E +++ +L C H FH C+ QWL+ CP+C+ +
Sbjct: 298 LSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRVDI 338
>sp|Q0V9R0|RN111_XENTR E3 ubiquitin-protein ligase arkadia OS=Xenopus tropicalis GN=rnf111
PE=2 SV=1
Length = 954
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Query: 283 YEELLELGDRIGYVSTGLKEDEIGRCLRKLK-NSIINDLSSHLPLHVDK----------- 330
+EEL+ L +R+G V+ G + I RC K + D S LH +
Sbjct: 840 FEELIHLEERLGNVNRGASQGTIERCTYPHKYEKVSTDWFSQRKLHSKQDGEEATEEDTE 899
Query: 331 -KCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAV 376
KCTIC E +++ +L C H FH C+ QWL CP+C+ +
Sbjct: 900 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 946
>sp|Q6NRV8|R111B_XENLA E3 ubiquitin-protein ligase arkadia-B OS=Xenopus laevis GN=rnf111-b
PE=2 SV=1
Length = 959
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Query: 283 YEELLELGDRIGYVSTGLKEDEIGRCLRKLK-NSIINDLSSHLPLHVDK----------- 330
+EEL+ L +R+G V+ G + I RC K + D S LH +
Sbjct: 845 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVSTDWFSQRKLHSKQDGEEATEEDTE 904
Query: 331 -KCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAV 376
KCTIC E +++ +L C H FH C+ QWL CP+C+ +
Sbjct: 905 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 951
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 33/48 (68%)
Query: 330 KKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVV 377
K C++C EY +++ KL C H +H+ CI +WLS+ + CP+C+ AV+
Sbjct: 583 KTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVL 630
>sp|Q66J97|R111C_XENLA E3 ubiquitin-protein ligase arkadia-C OS=Xenopus laevis GN=rnf111-c
PE=2 SV=1
Length = 967
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Query: 283 YEELLELGDRIGYVSTGLKEDEIGRCLRKLK-NSIINDLSSHLPLHVDK----------- 330
+EEL+ L +R+G V+ G + I RC K + D S LH +
Sbjct: 853 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVSTDWFSQRKLHSKQDGEEAPEEDTE 912
Query: 331 -KCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAV 376
KCTIC E +++ +L C H FH C+ QWL CP+C+ +
Sbjct: 913 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 959
>sp|Q90ZT7|R111A_XENLA E3 ubiquitin-protein ligase arkadia-A (Fragment) OS=Xenopus laevis
GN=rnf111-a PE=2 SV=1
Length = 923
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Query: 283 YEELLELGDRIGYVSTGLKEDEIGRCLRKLK-NSIINDLSSHLPLHVDK----------- 330
+EEL+ L +R+G V+ G + I RC K + D S LH +
Sbjct: 809 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVSTDWFSQRKLHSKQDGEEAPEEDTE 868
Query: 331 -KCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAV 376
KCTIC E +++ +L C H FH C+ QWL CP+C+ +
Sbjct: 869 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 915
>sp|Q5R476|RN111_PONAB E3 ubiquitin-protein ligase Arkadia OS=Pongo abelii GN=RNF111 PE=2
SV=1
Length = 986
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Query: 283 YEELLELGDRIGYVSTGLKEDEIGRC-----LRKLKNSIINDLSSHLPLHVDKKCTICQE 337
+EEL+ L +R+G V+ G + I RC +K K D ++KCTIC
Sbjct: 880 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKRKLHCKQDGEEGTEEDTEEKCTICLS 939
Query: 338 EYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAV 376
E +++ +L C H FH C+ QWL CP+C+ +
Sbjct: 940 ILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 978
>sp|Q9H6Y7|RN167_HUMAN E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens GN=RNF167 PE=1
SV=1
Length = 350
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 11/102 (10%)
Query: 286 LLELGDRIGYVSTGLKEDEIGRCL----RKLKNSIINDLSSHLPLHVDKK------CTIC 335
L+ +G + + I RC+ R +N + + +P H +K C IC
Sbjct: 174 LIPFTGIVGLLVLAMGAVMIARCIQHRKRLQRNRLTKEQLKQIPTHDYQKGDQYDVCAIC 233
Query: 336 QEEYEADDEMGKLDCGHSFHIQCIKQWLSQ-KNACPVCKAAV 376
+EYE D++ L C H++H +C+ WL+Q + CP+CK V
Sbjct: 234 LDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICKQPV 275
>sp|Q9DBU5|RNF6_MOUSE E3 ubiquitin-protein ligase RNF6 OS=Mus musculus GN=Rnf6 PE=1 SV=1
Length = 667
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 6/75 (8%)
Query: 309 LRKLKNSIINDLSSH------LPLHVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQW 362
+R L I++LS+ + + K C++C +Y A +++ +L C H FHI CI +W
Sbjct: 585 IRGLTKEQIDNLSTRSYEQDGVDSELGKVCSVCISDYVAGNKLRQLPCLHEFHIHCIDRW 644
Query: 363 LSQKNACPVCKAAVV 377
LS+ CPVC+ V+
Sbjct: 645 LSENCTCPVCRRPVL 659
>sp|O54965|RNF13_MOUSE E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1
SV=2
Length = 381
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 37/61 (60%), Gaps = 7/61 (11%)
Query: 324 LPLHVDKK------CTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQ-KNACPVCKAAV 376
LP+H KK C IC EEYE D++ L C H++H +C+ WL++ K CPVCK V
Sbjct: 226 LPVHKFKKGDEYDVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKV 285
Query: 377 V 377
V
Sbjct: 286 V 286
>sp|Q66HG0|RNF13_RAT E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13
PE=2 SV=1
Length = 380
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 37/61 (60%), Gaps = 7/61 (11%)
Query: 324 LPLHVDKK------CTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQ-KNACPVCKAAV 376
LP+H KK C IC EEYE D++ L C H++H +C+ WL++ K CPVCK V
Sbjct: 226 LPVHKFKKGDEYDVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKV 285
Query: 377 V 377
V
Sbjct: 286 V 286
>sp|Q9Y252|RNF6_HUMAN E3 ubiquitin-protein ligase RNF6 OS=Homo sapiens GN=RNF6 PE=1 SV=1
Length = 685
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 309 LRKLKNSIINDLSSHLPLH------VDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQW 362
+R L I++LS+ H + K C++C +Y +++ +L C H FHI CI +W
Sbjct: 603 IRGLTKEQIDNLSTRHYEHNSIDSELGKICSVCISDYVTGNKLRQLPCMHEFHIHCIDRW 662
Query: 363 LSQKNACPVCKAAVV 377
LS+ CP+C+ V+
Sbjct: 663 LSENCTCPICRQPVL 677
>sp|Q91XF4|RN167_MOUSE E3 ubiquitin-protein ligase RNF167 OS=Mus musculus GN=Rnf167 PE=2
SV=1
Length = 347
Score = 58.5 bits (140), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 11/102 (10%)
Query: 286 LLELGDRIGYVSTGLKEDEIGRCL----RKLKNSIINDLSSHLPLHVDKK------CTIC 335
L+ +G + + I RC+ R +N + + +P H +K C IC
Sbjct: 174 LIPFTGIVGLLVLAMGTVLIVRCIQHRKRLQRNRLTKEQLKQIPTHDYQKGDEYDVCAIC 233
Query: 336 QEEYEADDEMGKLDCGHSFHIQCIKQWLSQ-KNACPVCKAAV 376
+EYE D++ L C H++H +C+ WL+Q + CP+CK V
Sbjct: 234 LDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICKQPV 275
>sp|Q5XIL0|RN167_RAT E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus GN=Rnf167
PE=2 SV=1
Length = 349
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 11/102 (10%)
Query: 286 LLELGDRIGYVSTGLKEDEIGRCL----RKLKNSIINDLSSHLPLHVDKK------CTIC 335
L+ +G + + I RC+ R +N + + +P H +K C IC
Sbjct: 174 LIPFTGIVGLLVLAMGTVLIVRCIQHRKRLQRNRLTKEQLKQIPTHDYQKGDEYDVCAIC 233
Query: 336 QEEYEADDEMGKLDCGHSFHIQCIKQWLSQ-KNACPVCKAAV 376
+EYE D++ L C H++H +C+ WL+Q + CP+CK V
Sbjct: 234 LDEYEDGDKLRILPCAHAYHSRCVDPWLTQTRKTCPICKQPV 275
>sp|Q08CG8|RNF44_DANRE RING finger protein 44 OS=Danio rerio GN=rnf44 PE=2 SV=1
Length = 448
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 276 LDVDNM---SYEELLELGDRIGYVST-GLKEDEIGRCLRKLKNSIINDLSSHLPLHVDKK 331
LDVD++ +YE LL L +R+G GL + +I + L + ++ N S
Sbjct: 343 LDVDDVEMENYEALLNLAERLGEAKPRGLTKADIEQ-LPSYRFNLENHQSE------QTL 395
Query: 332 CTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKA 374
C +C ++E+ + L C H FH +C+ +WL CP+C+A
Sbjct: 396 CVVCFSDFESRQLLRVLPCNHEFHAKCVDKWLKTNRTCPICRA 438
>sp|Q90972|RNF13_CHICK E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1
SV=1
Length = 381
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 7/61 (11%)
Query: 324 LPLHVDKK------CTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQ-KNACPVCKAAV 376
LP+H KK C IC +EYE D++ L C H++H +C+ WL++ K CPVCK V
Sbjct: 226 LPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKV 285
Query: 377 V 377
V
Sbjct: 286 V 286
>sp|Q0VD51|RNF13_BOVIN E3 ubiquitin-protein ligase RNF13 OS=Bos taurus GN=RNF13 PE=2 SV=1
Length = 380
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 7/61 (11%)
Query: 324 LPLHVDKK------CTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQ-KNACPVCKAAV 376
LP+H KK C IC +EYE D++ L C H++H +C+ WL++ K CPVCK V
Sbjct: 226 LPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKV 285
Query: 377 V 377
V
Sbjct: 286 V 286
>sp|Q5RCV8|RNF13_PONAB E3 ubiquitin-protein ligase RNF13 OS=Pongo abelii GN=RNF13 PE=2
SV=1
Length = 381
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 7/61 (11%)
Query: 324 LPLHVDKK------CTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQ-KNACPVCKAAV 376
LP+H KK C IC +EYE D++ L C H++H +C+ WL++ K CPVCK V
Sbjct: 226 LPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKV 285
Query: 377 V 377
V
Sbjct: 286 V 286
>sp|O43567|RNF13_HUMAN E3 ubiquitin-protein ligase RNF13 OS=Homo sapiens GN=RNF13 PE=1
SV=1
Length = 381
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 7/61 (11%)
Query: 324 LPLHVDKK------CTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQ-KNACPVCKAAV 376
LP+H KK C IC +EYE D++ L C H++H +C+ WL++ K CPVCK V
Sbjct: 226 LPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKV 285
Query: 377 V 377
V
Sbjct: 286 V 286
>sp|Q9SN28|ATL7_ARATH RING-H2 finger protein ATL7 OS=Arabidopsis thaliana GN=ATL7 PE=2
SV=1
Length = 236
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 38/52 (73%), Gaps = 1/52 (1%)
Query: 329 DKKCTICQEEYEADDEMGKL-DCGHSFHIQCIKQWLSQKNACPVCKAAVVNR 379
D +C++C +Y+A++++ ++ CGH+FH++CI WL+ CP+C+ +++ +
Sbjct: 108 DSQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTTCPLCRLSLIPK 159
>sp|Q9SN27|ATL59_ARATH E3 ubiquitin-protein ligase ATL59 OS=Arabidopsis thaliana GN=ATL59
PE=1 SV=1
Length = 225
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 44/70 (62%), Gaps = 9/70 (12%)
Query: 319 DLSSHLPLHV--------DKKCTICQEEYEADDEMGKL-DCGHSFHIQCIKQWLSQKNAC 369
D+ LP+ + D +C++C +Y+A++++ ++ CGH+FH++CI WL+ C
Sbjct: 76 DIREMLPIVIYKESFTVNDTQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTTC 135
Query: 370 PVCKAAVVNR 379
P+C+ +++ +
Sbjct: 136 PLCRLSLIPK 145
>sp|Q7L0R7|RNF44_HUMAN RING finger protein 44 OS=Homo sapiens GN=RNF44 PE=2 SV=1
Length = 432
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 15/105 (14%)
Query: 276 LDVDNM---SYEELLELGDRIGYVST-GLKEDEIGRCLRKLKNSIINDLSSHLPLHVDKK 331
LDVD++ +YE LL L +R+G GL + +I +L + N S H ++
Sbjct: 327 LDVDDVEMENYEALLNLAERLGDAKPRGLTKADI----EQLPSYRFNPDS-----HQSEQ 377
Query: 332 --CTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKA 374
C +C ++EA + L C H FH +C+ +WL CP+C+A
Sbjct: 378 TLCVVCFSDFEARQLLRVLPCNHEFHTKCVDKWLKANRTCPICRA 422
>sp|Q9LZJ6|ATL5_ARATH RING-H2 finger protein ATL5 OS=Arabidopsis thaliana GN=ATL5 PE=2
SV=1
Length = 257
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 330 KKCTICQEEYEADDEMGKLD-CGHSFHIQCIKQWLSQKNACPVCKAAV 376
++C++C E+E DDE L CGH FH+ CI W +++CP+C+A V
Sbjct: 111 EECSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWFRSRSSCPLCRAPV 158
>sp|Q9LUZ9|ATL63_ARATH RING-H2 finger protein ATL63 OS=Arabidopsis thaliana GN=ATL63 PE=2
SV=1
Length = 308
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 15/79 (18%)
Query: 310 RKLKNSIINDLSSHLPLHV----------DKKCTICQEEYEADDEMGKL-DCGHSFHIQC 358
+ L +S+I S +PL V +++C IC +EA D KL +CGH FH++C
Sbjct: 110 KGLDSSVI----SSIPLFVYEENEEEEDEEEECVICLGLWEAGDFGRKLRNCGHGFHVEC 165
Query: 359 IKQWLSQKNACPVCKAAVV 377
I WLS + CP+C++ V+
Sbjct: 166 IDMWLSSHSTCPLCRSPVL 184
>sp|O22255|ATL64_ARATH RING-H2 finger protein ATL64 OS=Arabidopsis thaliana GN=ATL64 PE=2
SV=1
Length = 227
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 332 CTICQEEYEADDEMGKL--DCGHSFHIQCIKQWLSQKNACPVCKAAV 376
C++C E+E +DE G+L CGHSFH+ CI W ++ CP+C+A V
Sbjct: 108 CSVCLSEFEEEDE-GRLLPKCGHSFHVDCIDTWFRSRSTCPLCRAPV 153
>sp|Q4R6Y5|ZNRF4_MACFA Zinc/RING finger protein 4 OS=Macaca fascicularis GN=ZNRF4 PE=2
SV=1
Length = 429
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 332 CTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQ--KNACPVCKAAV 376
C IC +EYE D++ L C H++H +CI W SQ + +CPVCK +V
Sbjct: 309 CAICLDEYEEGDQLKILPCSHTYHCKCIDPWFSQAPRRSCPVCKQSV 355
>sp|Q8LBA0|NIPL2_ARATH NEP1-interacting protein-like 2 OS=Arabidopsis thaliana GN=ATL24
PE=1 SV=2
Length = 223
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 14/123 (11%)
Query: 255 LQNSLLMGGRVDSHDHFSDWRLDVDNMSYEELLELGDRIGYVSTGLKEDEIGRCLRKLKN 314
L + LM ++SH W+L + ++SYEE ++ + + GL D LRKL
Sbjct: 112 LVDEQLMSTMINSHH----WQLRISDVSYEEREDVYGELE--ARGLSGDS----LRKLPC 161
Query: 315 SIINDLSSHLPLHVDKKCTICQEEYEADDEMGKL-DCGHSFHIQCIKQWLSQKNACPVCK 373
I +SS + CTIC ++ + + L C H+FH+ C+ +WL + +CP+C+
Sbjct: 162 YI---MSSEMVRRQVTHCTICLQDIKTGEITRSLPKCDHTFHLVCVDKWLIRHGSCPICR 218
Query: 374 AAV 376
AV
Sbjct: 219 QAV 221
>sp|Q8WWF5|ZNRF4_HUMAN Zinc/RING finger protein 4 OS=Homo sapiens GN=ZNRF4 PE=2 SV=3
Length = 429
Score = 55.5 bits (132), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 332 CTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQ--KNACPVCKAAV 376
C IC +EYE D++ L C H++H +CI W SQ + +CPVCK +V
Sbjct: 309 CAICLDEYEEGDQLKILPCSHTYHCKCIDPWFSQAPRRSCPVCKQSV 355
>sp|Q570X5|ATL58_ARATH RING-H2 finger protein ATL58 OS=Arabidopsis thaliana GN=ATL58 PE=2
SV=1
Length = 261
Score = 55.5 bits (132), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 9/81 (11%)
Query: 306 GRCLRKLKNSIINDLSSHLPLHV--------DKKCTICQEEYEADDEMGKLD-CGHSFHI 356
G L ++ + +L LP+ V D +C++C +Y+ +D++ ++ C H+FH+
Sbjct: 66 GNSLSTIELGLSKELREMLPIVVFKESFTVMDSQCSVCLGDYQPNDKLQQIPVCKHTFHM 125
Query: 357 QCIKQWLSQKNACPVCKAAVV 377
CI WL+ CP+C+ A++
Sbjct: 126 DCIDLWLTSHTTCPLCRLALI 146
>sp|Q9LN71|RING1_ARATH E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana
GN=At1g12760 PE=2 SV=1
Length = 408
Score = 55.5 bits (132), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%)
Query: 323 HLPLHVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVV 377
H L D +C IC YE E+ +L CGH FH C+ +WL CP+CK ++
Sbjct: 344 HTLLQEDAECCICLSAYEDGTELRELPCGHHFHCSCVDKWLYINATCPLCKYNIL 398
>sp|Q9C7I1|ATL34_ARATH RING-H2 finger protein ATL34 OS=Arabidopsis thaliana GN=ATL34 PE=2
SV=1
Length = 327
Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 11/80 (13%)
Query: 307 RCLRKLKNSIINDLSSHL-----PLHVDK---KCTICQEEYEADDEMGKL--DCGHSFHI 356
R R L +IN S L L + K +C IC E+E D+E +L C H+FH
Sbjct: 95 RTSRGLGKDVINSFPSFLYSQVKGLKIGKGGVECAICLNEFE-DEETLRLMPPCSHAFHA 153
Query: 357 QCIKQWLSQKNACPVCKAAV 376
CI WLS ++ CPVC+A++
Sbjct: 154 SCIDVWLSSRSTCPVCRASL 173
>sp|Q8LDB8|RING2_ARATH E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana
GN=At1g63170 PE=2 SV=2
Length = 381
Score = 55.1 bits (131), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 324 LPLHVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVV 377
LP H D +C IC YE + E+ +L CGH FH C+ +WL CP+CK ++
Sbjct: 318 LP-HEDAECCICLSAYEDETELRELPCGHHFHCGCVDKWLYINATCPLCKYNIL 370
>sp|Q8LC69|ATL8_ARATH RING-H2 finger protein ATL8 OS=Arabidopsis thaliana GN=ATL8 PE=2
SV=2
Length = 185
Score = 55.1 bits (131), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 331 KCTICQEEYEADDEMGKL-DCGHSFHIQCIKQWLSQKNACPVCK-AAVVNRC 380
+C IC E+ A DE+ L CGH FH+ CI WL ++CP C+ VV RC
Sbjct: 103 ECAICLTEFAAGDELRVLPQCGHGFHVSCIDTWLGSHSSCPSCRQILVVTRC 154
>sp|Q9CY62|RN181_MOUSE E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=2
SV=1
Length = 165
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 328 VDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCK 373
D KC +C E+EA++ + ++ C H FH CI WLS+ N+CP+C+
Sbjct: 84 ADLKCPVCLLEFEAEETVIEMPCHHLFHSNCILPWLSKTNSCPLCR 129
>sp|Q9LM69|ATL80_ARATH RING-H2 finger protein ATL80 OS=Arabidopsis thaliana GN=ATL80 PE=1
SV=1
Length = 197
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 331 KCTICQEEYEADDEMGKL-DCGHSFHIQCIKQWLSQKNACPVCK-AAVVNRC 380
+C IC E+ A DE+ L CGH FH+ CI WL ++CP C+ VV RC
Sbjct: 110 ECAICLAEFSAGDELRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVVARC 161
>sp|Q3UHJ8|RNF44_MOUSE RING finger protein 44 OS=Mus musculus GN=Rnf44 PE=2 SV=1
Length = 407
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 15/105 (14%)
Query: 276 LDVDNM---SYEELLELGDRIGYVST-GLKEDEIGRCLRKLKNSIINDLSSHLPLHVDKK 331
LDVD++ +YE LL L +R+G GL + +I +L + N S H ++
Sbjct: 302 LDVDDVEMENYEALLNLAERLGDAKPRGLTKADI----EQLPSYRFNPDS-----HQSEQ 352
Query: 332 --CTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKA 374
C +C ++E + L C H FH +C+ +WL CP+C+A
Sbjct: 353 TLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRA 397
>sp|Q20798|HRD1_CAEEL E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis elegans
GN=sel-11 PE=3 SV=1
Length = 610
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 317 INDLSSHLPL-------HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNAC 369
IN ++S P+ +D C IC+EE D +L C H FH C++ W ++ C
Sbjct: 270 INAMNSQFPVVSAEDLAAMDATCIICREEMTVDASPKRLPCSHVFHAHCLRSWFQRQQTC 329
Query: 370 PVCK 373
P C+
Sbjct: 330 PTCR 333
>sp|Q9C1X4|YKW3_SCHPO Uncharacterized RING finger protein P32A8.03c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAP32A8.03c PE=4 SV=1
Length = 513
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 329 DKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAV 376
+ +CTIC E ++ +D++ +L C H FH CIK WL C +C+A V
Sbjct: 393 EGECTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICRAPV 440
>sp|Q6NQG7|ATL78_ARATH RING-H2 finger protein ATL78 OS=Arabidopsis thaliana GN=ATL78 PE=2
SV=1
Length = 219
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 328 VDKKCTICQEEYEADDEMGKL-DCGHSFHIQCIKQWLSQKNACPVCKAAVVNRC 380
+D +C IC E+ A++ + L C H FH++CI +WLS ++CP C+ ++ C
Sbjct: 127 LDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDKWLSSHSSCPTCRHCLIQTC 180
>sp|Q8BI21|RNF38_MOUSE RING finger protein 38 OS=Mus musculus GN=Rnf38 PE=2 SV=1
Length = 518
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 11/105 (10%)
Query: 274 WRLDVDN---MSYEELLELGDRIGYVST-GLKEDEIGRCLRKLKNSIINDLSSHLPLHVD 329
+ LDV++ +YE LL L +R+G GL + +I + L + + N S
Sbjct: 411 FELDVEDGEVENYEALLNLAERLGEAKPRGLTKADIEQ-LPSYRFNPSNHQSE------Q 463
Query: 330 KKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKA 374
C +C ++E+ + L C H FH +C+ +WL CP+C+A
Sbjct: 464 TLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKGNRTCPICRA 508
>sp|Q8RXD3|AIP2_ARATH E3 ubiquitin-protein ligase AIP2 OS=Arabidopsis thaliana GN=AIP2
PE=1 SV=1
Length = 310
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 329 DKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCK 373
+ +C IC+E D+M +L C H+FH C+K WL + N+CP+C+
Sbjct: 227 EAECCICKENLVIGDKMQELPCKHTFHPPCLKPWLDEHNSCPICR 271
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 145,377,781
Number of Sequences: 539616
Number of extensions: 6407339
Number of successful extensions: 180219
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1642
Number of HSP's successfully gapped in prelim test: 582
Number of HSP's that attempted gapping in prelim test: 63415
Number of HSP's gapped (non-prelim): 55914
length of query: 380
length of database: 191,569,459
effective HSP length: 119
effective length of query: 261
effective length of database: 127,355,155
effective search space: 33239695455
effective search space used: 33239695455
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)