Query 016946
Match_columns 380
No_of_seqs 246 out of 1717
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 04:14:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016946.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016946hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13639 zf-RING_2: Ring finge 99.5 1.2E-14 2.6E-19 103.4 2.0 44 330-373 1-44 (44)
2 KOG4628 Predicted E3 ubiquitin 99.4 4.8E-14 1E-18 140.2 4.1 48 330-377 230-278 (348)
3 PF12678 zf-rbx1: RING-H2 zinc 99.2 1.3E-11 2.9E-16 97.5 3.7 45 329-373 19-73 (73)
4 COG5540 RING-finger-containing 99.1 1.8E-11 3.9E-16 118.9 3.2 50 329-378 323-373 (374)
5 COG5243 HRD1 HRD ubiquitin lig 99.1 3.9E-11 8.4E-16 119.2 4.9 52 326-377 284-345 (491)
6 PHA02929 N1R/p28-like protein; 99.1 9.2E-11 2E-15 112.0 4.2 51 327-377 172-227 (238)
7 KOG0823 Predicted E3 ubiquitin 98.9 3.5E-10 7.7E-15 106.5 3.1 49 327-378 45-96 (230)
8 KOG0317 Predicted E3 ubiquitin 98.9 5.6E-10 1.2E-14 108.1 3.8 50 326-378 236-285 (293)
9 PLN03208 E3 ubiquitin-protein 98.9 8.2E-10 1.8E-14 102.1 4.5 49 327-378 16-80 (193)
10 cd00162 RING RING-finger (Real 98.9 1E-09 2.2E-14 75.9 3.5 44 331-376 1-45 (45)
11 PF13920 zf-C3HC4_3: Zinc fing 98.9 1.1E-09 2.3E-14 80.0 3.0 46 329-377 2-48 (50)
12 PF13923 zf-C3HC4_2: Zinc fing 98.9 1.2E-09 2.6E-14 75.9 2.7 39 332-372 1-39 (39)
13 KOG0802 E3 ubiquitin ligase [P 98.8 1.5E-09 3.2E-14 114.9 2.3 50 328-377 290-341 (543)
14 PF15227 zf-C3HC4_4: zinc fing 98.8 5E-09 1.1E-13 74.4 2.9 38 332-372 1-42 (42)
15 KOG0320 Predicted E3 ubiquitin 98.7 6.6E-09 1.4E-13 94.6 3.1 52 327-379 129-180 (187)
16 PF00097 zf-C3HC4: Zinc finger 98.7 1.3E-08 2.8E-13 70.9 2.8 39 332-372 1-41 (41)
17 smart00504 Ubox Modified RING 98.7 2.2E-08 4.8E-13 75.5 4.1 45 330-377 2-46 (63)
18 PF12861 zf-Apc11: Anaphase-pr 98.6 1.8E-08 3.9E-13 81.9 3.4 50 328-377 20-82 (85)
19 smart00184 RING Ring finger. E 98.6 2.5E-08 5.3E-13 66.5 3.4 38 332-372 1-39 (39)
20 PHA02926 zinc finger-like prot 98.6 1.7E-08 3.7E-13 94.9 3.4 49 328-376 169-229 (242)
21 PF14634 zf-RING_5: zinc-RING 98.6 2.2E-08 4.8E-13 71.4 3.2 44 331-374 1-44 (44)
22 TIGR00599 rad18 DNA repair pro 98.6 4.1E-08 8.9E-13 100.1 3.9 48 327-377 24-71 (397)
23 COG5194 APC11 Component of SCF 98.5 9.2E-08 2E-12 76.5 3.3 49 329-377 31-81 (88)
24 COG5574 PEX10 RING-finger-cont 98.4 1.2E-07 2.5E-12 91.2 2.6 50 327-379 213-264 (271)
25 KOG2164 Predicted E3 ubiquitin 98.3 2.3E-07 4.9E-12 96.1 3.0 48 329-379 186-238 (513)
26 PF13445 zf-RING_UBOX: RING-ty 98.2 9.9E-07 2.1E-11 63.1 2.3 38 332-370 1-43 (43)
27 KOG1734 Predicted RING-contain 98.1 5.5E-07 1.2E-11 86.8 0.8 50 327-376 222-280 (328)
28 KOG0287 Postreplication repair 98.1 8.4E-07 1.8E-11 87.9 1.9 47 329-378 23-69 (442)
29 smart00744 RINGv The RING-vari 98.1 2.1E-06 4.6E-11 62.9 3.1 42 331-373 1-49 (49)
30 PF04564 U-box: U-box domain; 98.1 2.5E-06 5.3E-11 67.3 2.9 48 328-378 3-51 (73)
31 KOG2177 Predicted E3 ubiquitin 98.1 1.5E-06 3.3E-11 80.6 1.9 45 327-374 11-55 (386)
32 PF11793 FANCL_C: FANCL C-term 98.0 6E-07 1.3E-11 70.5 -1.0 50 329-378 2-67 (70)
33 COG5219 Uncharacterized conser 98.0 1.9E-06 4E-11 94.2 1.4 52 326-377 1466-1523(1525)
34 KOG1493 Anaphase-promoting com 98.0 2E-06 4.4E-11 68.4 1.1 50 328-377 19-81 (84)
35 KOG2930 SCF ubiquitin ligase, 98.0 3.4E-06 7.4E-11 70.7 2.1 29 349-377 80-108 (114)
36 KOG0828 Predicted E3 ubiquitin 98.0 2.7E-06 5.8E-11 87.7 1.8 51 328-378 570-635 (636)
37 COG5432 RAD18 RING-finger-cont 98.0 3.7E-06 8.1E-11 81.9 2.5 47 328-377 24-70 (391)
38 KOG4445 Uncharacterized conser 97.8 1.1E-05 2.3E-10 79.1 2.0 50 328-377 114-186 (368)
39 KOG4265 Predicted E3 ubiquitin 97.7 1.7E-05 3.7E-10 79.3 3.0 49 327-378 288-337 (349)
40 KOG0311 Predicted E3 ubiquitin 97.7 5.3E-06 1.2E-10 82.7 -1.6 51 327-379 41-92 (381)
41 KOG0804 Cytoplasmic Zn-finger 97.5 3.6E-05 7.8E-10 78.9 1.6 49 327-377 173-222 (493)
42 KOG0825 PHD Zn-finger protein 97.5 2.8E-05 6E-10 84.0 0.0 51 327-377 121-171 (1134)
43 PF14835 zf-RING_6: zf-RING of 97.5 2.5E-05 5.5E-10 60.4 -0.3 46 329-378 7-52 (65)
44 KOG1039 Predicted E3 ubiquitin 97.5 5.6E-05 1.2E-09 76.1 2.1 50 327-376 159-220 (344)
45 KOG4172 Predicted E3 ubiquitin 97.4 4.8E-05 1E-09 57.0 0.6 47 328-377 6-54 (62)
46 KOG0978 E3 ubiquitin ligase in 97.4 0.00014 3.1E-09 78.7 4.1 46 329-377 643-689 (698)
47 KOG2879 Predicted E3 ubiquitin 97.2 0.00037 8.1E-09 67.7 4.8 49 327-377 237-287 (298)
48 KOG3970 Predicted E3 ubiquitin 97.2 0.00037 7.9E-09 66.2 3.8 49 329-378 50-106 (299)
49 KOG4692 Predicted E3 ubiquitin 97.1 0.00052 1.1E-08 68.8 4.2 52 323-377 416-467 (489)
50 KOG4275 Predicted E3 ubiquitin 97.0 0.00023 5E-09 69.7 1.3 93 276-377 247-342 (350)
51 KOG1428 Inhibitor of type V ad 97.0 0.00039 8.5E-09 79.1 3.0 50 327-376 3484-3543(3738)
52 KOG4159 Predicted E3 ubiquitin 97.0 0.0004 8.8E-09 71.3 2.4 49 327-378 82-130 (398)
53 KOG1785 Tyrosine kinase negati 96.9 0.00032 6.9E-09 71.2 1.3 45 330-377 370-416 (563)
54 PF11789 zf-Nse: Zinc-finger o 96.9 0.00056 1.2E-08 51.8 1.8 42 328-371 10-53 (57)
55 KOG0297 TNF receptor-associate 96.6 0.00084 1.8E-08 68.9 1.8 49 327-377 19-67 (391)
56 KOG2660 Locus-specific chromos 96.6 0.00052 1.1E-08 68.2 -0.0 46 329-376 15-60 (331)
57 KOG1941 Acetylcholine receptor 96.6 0.00069 1.5E-08 68.7 0.7 48 327-374 363-413 (518)
58 COG5152 Uncharacterized conser 96.3 0.0017 3.6E-08 60.8 1.3 46 330-378 197-242 (259)
59 PF10367 Vps39_2: Vacuolar sor 96.1 0.0024 5.3E-08 52.5 1.3 34 326-360 75-108 (109)
60 KOG1952 Transcription factor N 96.0 0.028 6.1E-07 62.1 8.8 46 329-374 191-244 (950)
61 KOG3039 Uncharacterized conser 95.8 0.0075 1.6E-07 58.1 3.3 52 328-379 220-272 (303)
62 PF12906 RINGv: RING-variant d 95.6 0.0062 1.3E-07 44.2 1.6 40 332-372 1-47 (47)
63 KOG3268 Predicted E3 ubiquitin 95.5 0.0096 2.1E-07 54.9 2.8 52 329-380 165-231 (234)
64 KOG0801 Predicted E3 ubiquitin 95.5 0.0044 9.5E-08 56.3 0.4 30 327-356 175-204 (205)
65 KOG1814 Predicted E3 ubiquitin 95.4 0.0091 2E-07 61.1 2.3 46 329-374 184-237 (445)
66 PF05883 Baculo_RING: Baculovi 95.3 0.009 1.9E-07 52.7 1.9 38 329-366 26-69 (134)
67 KOG1813 Predicted E3 ubiquitin 95.3 0.0063 1.4E-07 59.9 0.9 46 329-377 241-286 (313)
68 PF14570 zf-RING_4: RING/Ubox 95.3 0.015 3.3E-07 42.6 2.6 44 332-376 1-47 (48)
69 PF04641 Rtf2: Rtf2 RING-finge 95.2 0.016 3.5E-07 56.2 3.3 50 327-377 111-161 (260)
70 KOG2114 Vacuolar assembly/sort 95.0 0.013 2.9E-07 64.5 2.5 43 329-376 840-882 (933)
71 COG5236 Uncharacterized conser 94.9 0.024 5.1E-07 57.1 3.5 47 327-376 59-107 (493)
72 KOG1571 Predicted E3 ubiquitin 94.7 0.015 3.2E-07 58.7 1.7 44 328-377 304-347 (355)
73 KOG1002 Nucleotide excision re 94.6 0.015 3.2E-07 61.3 1.5 47 327-376 534-585 (791)
74 PHA02825 LAP/PHD finger-like p 94.6 0.034 7.4E-07 50.4 3.6 46 327-376 6-58 (162)
75 KOG0827 Predicted E3 ubiquitin 94.1 0.0047 1E-07 62.8 -3.4 49 329-377 196-245 (465)
76 PHA02862 5L protein; Provision 94.0 0.043 9.2E-07 49.1 2.9 48 329-376 2-52 (156)
77 PF14447 Prok-RING_4: Prokaryo 93.9 0.028 6.1E-07 42.4 1.2 44 329-377 7-50 (55)
78 PHA03096 p28-like protein; Pro 93.5 0.043 9.3E-07 54.2 2.1 35 330-364 179-218 (284)
79 COG5222 Uncharacterized conser 93.2 0.051 1.1E-06 53.8 2.2 44 329-374 274-318 (427)
80 KOG1940 Zn-finger protein [Gen 93.2 0.044 9.5E-07 53.9 1.6 46 329-374 158-204 (276)
81 PF03854 zf-P11: P-11 zinc fin 92.9 0.042 9.2E-07 40.2 0.8 34 346-379 14-48 (50)
82 PF05290 Baculo_IE-1: Baculovi 92.1 0.11 2.4E-06 45.9 2.5 46 328-376 79-131 (140)
83 KOG0298 DEAD box-containing he 91.9 0.052 1.1E-06 62.4 0.3 42 330-374 1154-1196(1394)
84 PF08746 zf-RING-like: RING-li 91.7 0.093 2E-06 37.5 1.3 41 332-372 1-43 (43)
85 COG5175 MOT2 Transcriptional r 91.7 0.12 2.7E-06 52.0 2.7 50 328-377 13-64 (480)
86 KOG1001 Helicase-like transcri 91.6 0.077 1.7E-06 58.2 1.3 44 330-377 455-500 (674)
87 KOG0826 Predicted E3 ubiquitin 91.4 0.18 3.8E-06 50.7 3.4 47 327-376 298-345 (357)
88 COG5220 TFB3 Cdk activating ki 90.1 0.12 2.7E-06 49.8 1.0 46 329-374 10-61 (314)
89 KOG3002 Zn finger protein [Gen 89.5 0.2 4.4E-06 49.9 2.0 44 328-378 47-92 (299)
90 KOG2932 E3 ubiquitin ligase in 89.4 0.16 3.5E-06 50.6 1.2 44 329-376 90-133 (389)
91 PLN02705 beta-amylase 89.1 0.16 3.4E-06 54.8 0.9 19 45-63 36-54 (681)
92 KOG2034 Vacuolar sorting prote 88.4 0.22 4.8E-06 55.5 1.6 36 327-363 815-850 (911)
93 KOG3053 Uncharacterized conser 87.7 0.24 5.3E-06 48.2 1.1 50 327-376 18-81 (293)
94 KOG2817 Predicted E3 ubiquitin 87.5 0.41 8.9E-06 49.1 2.7 47 329-375 334-383 (394)
95 KOG1812 Predicted E3 ubiquitin 84.5 0.41 8.8E-06 49.3 1.0 39 328-366 145-184 (384)
96 KOG0309 Conserved WD40 repeat- 84.2 0.61 1.3E-05 51.4 2.2 42 330-371 1019-1069(1081)
97 KOG1100 Predicted E3 ubiquitin 83.8 0.56 1.2E-05 44.4 1.5 40 332-378 161-201 (207)
98 KOG4362 Transcriptional regula 83.3 0.32 7E-06 53.1 -0.3 45 329-376 21-68 (684)
99 PF14446 Prok-RING_1: Prokaryo 83.2 1.2 2.5E-05 33.7 2.6 43 329-375 5-50 (54)
100 PF02891 zf-MIZ: MIZ/SP-RING z 80.5 0.84 1.8E-05 33.5 1.1 43 330-375 3-50 (50)
101 KOG1609 Protein involved in mR 80.3 0.86 1.9E-05 44.3 1.4 48 329-376 78-133 (323)
102 COG5183 SSM4 Protein involved 80.0 1.2 2.6E-05 49.6 2.5 49 327-376 10-65 (1175)
103 KOG0825 PHD Zn-finger protein 79.7 1 2.2E-05 49.9 1.9 49 329-377 96-154 (1134)
104 PF10272 Tmpp129: Putative tra 79.4 1.5 3.1E-05 44.9 2.7 28 350-377 311-351 (358)
105 PF02166 Androgen_recep: Andro 77.4 0.74 1.6E-05 46.5 0.0 7 11-17 24-30 (423)
106 KOG1829 Uncharacterized conser 75.8 2.1 4.5E-05 46.4 2.8 43 327-372 509-556 (580)
107 PF13901 DUF4206: Domain of un 74.6 3.2 7E-05 38.9 3.5 83 276-373 109-196 (202)
108 KOG2068 MOT2 transcription fac 71.6 2.9 6.3E-05 42.2 2.5 50 329-378 249-299 (327)
109 KOG1815 Predicted E3 ubiquitin 70.9 2.7 5.8E-05 44.0 2.2 36 327-364 68-103 (444)
110 KOG2066 Vacuolar assembly/sort 69.6 2.1 4.5E-05 47.6 1.1 45 327-372 782-830 (846)
111 smart00249 PHD PHD zinc finger 68.0 2.8 6.2E-05 28.4 1.2 31 331-361 1-31 (47)
112 KOG3899 Uncharacterized conser 66.8 3.1 6.7E-05 41.5 1.5 28 350-377 325-365 (381)
113 KOG4246 Predicted DNA-binding 66.6 2.6 5.7E-05 47.1 1.1 10 238-247 390-399 (1194)
114 KOG3579 Predicted E3 ubiquitin 62.8 3.9 8.4E-05 40.7 1.4 37 328-367 267-307 (352)
115 KOG0802 E3 ubiquitin ligase [P 62.5 3.5 7.6E-05 44.2 1.1 44 327-377 477-520 (543)
116 KOG0269 WD40 repeat-containing 61.6 5.8 0.00012 44.1 2.5 40 331-371 781-820 (839)
117 KOG3598 Thyroid hormone recept 59.4 5.2 0.00011 47.3 1.8 15 56-70 2165-2179(2220)
118 KOG4246 Predicted DNA-binding 58.9 3.9 8.4E-05 45.8 0.7 6 75-80 199-204 (1194)
119 COG5109 Uncharacterized conser 57.8 7 0.00015 39.4 2.2 45 329-373 336-383 (396)
120 KOG3005 GIY-YIG type nuclease 57.4 6 0.00013 39.0 1.6 47 330-376 183-242 (276)
121 PLN02705 beta-amylase 56.0 6.8 0.00015 42.7 1.9 12 303-314 268-279 (681)
122 KOG3039 Uncharacterized conser 55.7 7.8 0.00017 37.9 2.1 34 328-364 42-75 (303)
123 PF00628 PHD: PHD-finger; Int 55.4 4.5 9.8E-05 28.9 0.3 43 331-373 1-49 (51)
124 KOG4718 Non-SMC (structural ma 55.3 6.2 0.00013 37.7 1.3 43 329-373 181-223 (235)
125 KOG3161 Predicted E3 ubiquitin 54.0 5.2 0.00011 43.8 0.7 42 329-373 11-53 (861)
126 KOG1812 Predicted E3 ubiquitin 51.3 7.6 0.00016 40.1 1.3 42 330-372 307-351 (384)
127 KOG3113 Uncharacterized conser 50.6 13 0.00028 36.5 2.7 47 329-377 111-158 (293)
128 KOG1819 FYVE finger-containing 50.2 31 0.00067 37.0 5.5 14 109-122 876-889 (990)
129 PF06906 DUF1272: Protein of u 49.7 29 0.00062 26.5 3.8 47 330-379 6-54 (57)
130 smart00132 LIM Zinc-binding do 49.5 13 0.00028 24.1 1.9 38 331-377 1-38 (39)
131 KOG3842 Adaptor protein Pellin 48.8 14 0.00031 37.3 2.7 50 328-377 340-414 (429)
132 PF03249 TSA: Type specific an 43.5 4.8 0.0001 41.4 -1.5 23 8-32 292-314 (503)
133 PF04710 Pellino: Pellino; In 43.3 7.9 0.00017 40.1 0.0 29 344-375 303-337 (416)
134 KOG2807 RNA polymerase II tran 41.8 17 0.00036 37.0 2.0 46 329-374 330-375 (378)
135 PF10235 Cript: Microtubule-as 41.8 15 0.00032 30.6 1.4 38 329-378 44-81 (90)
136 KOG1902 Putative signal transd 41.8 12 0.00026 38.2 1.0 15 187-201 412-426 (441)
137 KOG4407 Predicted Rho GTPase-a 41.1 16 0.00035 43.1 2.0 11 47-57 343-353 (1973)
138 PF02318 FYVE_2: FYVE-type zin 40.2 19 0.0004 30.8 1.8 46 328-374 53-102 (118)
139 KOG4140 Nuclear protein Ataxin 40.1 52 0.0011 35.3 5.3 14 23-36 516-529 (659)
140 KOG0824 Predicted E3 ubiquitin 39.5 9.9 0.00021 38.1 0.0 47 327-376 103-150 (324)
141 PF13717 zinc_ribbon_4: zinc-r 39.5 13 0.00029 25.3 0.7 26 330-355 3-36 (36)
142 PF03154 Atrophin-1: Atrophin- 37.5 12 0.00027 42.6 0.4 17 188-204 604-620 (982)
143 PF14311 DUF4379: Domain of un 35.2 22 0.00048 26.1 1.3 23 349-372 33-55 (55)
144 smart00064 FYVE Protein presen 34.8 11 0.00025 28.5 -0.3 36 329-364 10-46 (68)
145 KOG4185 Predicted E3 ubiquitin 34.4 7.8 0.00017 37.8 -1.6 47 329-375 207-265 (296)
146 PF07975 C1_4: TFIIH C1-like d 33.1 23 0.0005 26.4 1.1 42 332-373 2-50 (51)
147 PF04710 Pellino: Pellino; In 32.4 15 0.00032 38.2 0.0 49 329-377 328-401 (416)
148 PF06752 E_Pc_C: Enhancer of P 32.4 37 0.00079 32.8 2.6 24 57-81 49-72 (230)
149 KOG2169 Zn-finger transcriptio 31.6 40 0.00087 37.1 3.1 89 280-376 259-355 (636)
150 PF06844 DUF1244: Protein of u 31.3 29 0.00063 27.3 1.4 11 354-364 12-22 (68)
151 cd00350 rubredoxin_like Rubred 31.1 21 0.00046 23.7 0.6 11 365-375 16-26 (33)
152 PF01363 FYVE: FYVE zinc finge 30.7 19 0.00042 27.3 0.4 36 328-363 8-44 (69)
153 PF14569 zf-UDP: Zinc-binding 30.5 63 0.0014 26.3 3.2 49 328-376 8-61 (80)
154 COG4847 Uncharacterized protei 30.2 44 0.00096 28.1 2.4 36 329-365 6-41 (103)
155 KOG4679 Uncharacterized protei 29.5 15 0.00033 38.8 -0.5 19 134-152 259-277 (572)
156 KOG1883 Cofactor required for 29.0 23 0.00049 41.4 0.7 8 6-13 1399-1406(1517)
157 PF07191 zinc-ribbons_6: zinc- 28.8 5.8 0.00013 31.5 -2.8 39 330-376 2-40 (70)
158 KOG1729 FYVE finger containing 27.9 15 0.00033 36.5 -0.8 38 328-365 213-250 (288)
159 KOG2113 Predicted RNA binding 26.7 46 0.00099 33.8 2.2 44 329-377 343-387 (394)
160 PF13719 zinc_ribbon_5: zinc-r 26.5 29 0.00063 23.7 0.6 26 330-355 3-36 (37)
161 KOG1245 Chromatin remodeling c 25.6 26 0.00055 42.1 0.4 49 328-376 1107-1159(1404)
162 PF04216 FdhE: Protein involve 25.4 7.2 0.00016 38.3 -3.6 47 329-375 172-220 (290)
163 PF15504 DUF4647: Domain of un 25.1 23 0.0005 36.8 -0.1 11 16-26 284-294 (457)
164 PF04423 Rad50_zn_hook: Rad50 25.1 24 0.00051 25.9 -0.0 10 368-377 22-31 (54)
165 cd00065 FYVE FYVE domain; Zinc 24.9 49 0.0011 23.9 1.7 35 330-364 3-38 (57)
166 PF10571 UPF0547: Uncharacteri 24.6 39 0.00084 21.6 0.9 23 331-354 2-24 (26)
167 KOG3263 Nucleic acid binding p 24.6 61 0.0013 30.2 2.5 11 176-186 12-22 (196)
168 KOG4577 Transcription factor L 24.2 19 0.00042 36.0 -0.8 40 329-377 92-131 (383)
169 PF00412 LIM: LIM domain; Int 23.6 41 0.00089 24.1 1.0 26 332-358 1-26 (58)
170 PF14169 YdjO: Cold-inducible 23.4 38 0.00083 26.0 0.8 14 365-378 38-51 (59)
171 KOG2113 Predicted RNA binding 23.0 25 0.00055 35.6 -0.3 43 329-375 136-181 (394)
172 PF11671 Apis_Csd: Complementa 22.9 34 0.00073 30.4 0.5 21 176-196 27-47 (146)
173 PF05605 zf-Di19: Drought indu 22.6 36 0.00078 24.9 0.5 14 329-342 2-15 (54)
174 PLN02189 cellulose synthase 21.9 82 0.0018 36.7 3.4 49 328-376 33-86 (1040)
175 KOG3726 Uncharacterized conser 21.7 45 0.00098 37.0 1.3 41 330-373 655-696 (717)
176 KOG3799 Rab3 effector RIM1 and 21.6 23 0.00049 31.7 -0.8 17 326-342 62-79 (169)
177 COG3813 Uncharacterized protei 21.5 88 0.0019 25.2 2.5 46 331-379 7-54 (84)
178 PF06847 Arc_PepC_II: Archaeal 21.1 30 0.00064 28.8 -0.2 12 135-146 65-76 (93)
179 PF09943 DUF2175: Uncharacteri 20.8 69 0.0015 27.2 1.9 35 329-364 2-36 (101)
180 TIGR00622 ssl1 transcription f 20.8 74 0.0016 27.5 2.2 46 329-374 55-111 (112)
181 PF07649 C1_3: C1-like domain; 20.6 63 0.0014 20.8 1.3 29 331-359 2-30 (30)
182 PF10497 zf-4CXXC_R1: Zinc-fin 20.5 97 0.0021 26.2 2.8 24 351-374 37-69 (105)
183 KOG2888 Putative RNA binding p 20.5 26 0.00057 35.7 -0.8 14 187-200 340-353 (453)
184 KOG3537 Adaptor protein NUMB [ 20.2 81 0.0018 33.4 2.7 17 26-42 382-398 (543)
185 KOG4443 Putative transcription 20.1 56 0.0012 36.1 1.5 46 329-374 18-70 (694)
No 1
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.48 E-value=1.2e-14 Score=103.44 Aligned_cols=44 Identities=52% Similarity=1.272 Sum_probs=40.5
Q ss_pred ccccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCcccc
Q 016946 330 KKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCK 373 (380)
Q Consensus 330 ~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR 373 (380)
+.|+||+++|..++.++.|+|||.||..||..||..+.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 47999999999999999999999999999999999999999997
No 2
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=4.8e-14 Score=140.19 Aligned_cols=48 Identities=46% Similarity=1.120 Sum_probs=44.7
Q ss_pred ccccccccccccCCcceeccCCCcccHHHHHHHHhcCC-CCcccccccc
Q 016946 330 KKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKN-ACPVCKAAVV 377 (380)
Q Consensus 330 ~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~-sCPvCR~~i~ 377 (380)
..|+||||+|+.||.++.|||+|.||..||++||.... .||+||..+.
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCC
Confidence 48999999999999999999999999999999999774 5999999875
No 3
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.19 E-value=1.3e-11 Score=97.49 Aligned_cols=45 Identities=47% Similarity=1.071 Sum_probs=36.2
Q ss_pred cccccccccccccC----------CcceeccCCCcccHHHHHHHHhcCCCCcccc
Q 016946 329 DKKCTICQEEYEAD----------DEMGKLDCGHSFHIQCIKQWLSQKNACPVCK 373 (380)
Q Consensus 329 d~~CsICleef~~~----------e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR 373 (380)
++.|+||++.|.+. -.+...+|||.||..||.+||....+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 55699999999432 2244458999999999999999999999997
No 4
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=1.8e-11 Score=118.88 Aligned_cols=50 Identities=36% Similarity=0.980 Sum_probs=47.1
Q ss_pred cccccccccccccCCcceeccCCCcccHHHHHHHHh-cCCCCccccccccc
Q 016946 329 DKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLS-QKNACPVCKAAVVN 378 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~-~k~sCPvCR~~i~~ 378 (380)
.-+|+|||+.|..+|.+..|||.|.||..||.+||. -++.||+||++|.+
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 478999999999999999999999999999999999 88899999999875
No 5
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=3.9e-11 Score=119.20 Aligned_cols=52 Identities=38% Similarity=1.103 Sum_probs=44.1
Q ss_pred CCCcccccccccc-cccCC---------cceeccCCCcccHHHHHHHHhcCCCCcccccccc
Q 016946 326 LHVDKKCTICQEE-YEADD---------EMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVV 377 (380)
Q Consensus 326 ~~~d~~CsIClee-f~~~e---------~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~ 377 (380)
..+|..|.||+++ |+.+. ...+|||||.||..|++.|++++.+||+||.++.
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~i 345 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVI 345 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccc
Confidence 3567899999999 55542 2478999999999999999999999999999853
No 6
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.06 E-value=9.2e-11 Score=112.02 Aligned_cols=51 Identities=41% Similarity=0.993 Sum_probs=42.3
Q ss_pred CCcccccccccccccCCc----ceec-cCCCcccHHHHHHHHhcCCCCcccccccc
Q 016946 327 HVDKKCTICQEEYEADDE----MGKL-DCGHSFHIQCIKQWLSQKNACPVCKAAVV 377 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~----v~~L-pCgH~FH~~CI~~WL~~k~sCPvCR~~i~ 377 (380)
..+..|+||++.+...+. ++.+ +|+|.||..||.+|+..+.+||+||..+.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 346899999999876431 2344 79999999999999999999999998774
No 7
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=3.5e-10 Score=106.52 Aligned_cols=49 Identities=37% Similarity=0.689 Sum_probs=41.5
Q ss_pred CCcccccccccccccCCcceeccCCCcccHHHHHHHHh---cCCCCccccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLS---QKNACPVCKAAVVN 378 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~---~k~sCPvCR~~i~~ 378 (380)
....+|.|||+.-+++ +.+.|||.||+.||++||. .++.|||||..|..
T Consensus 45 ~~~FdCNICLd~akdP---VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~ 96 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDP---VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSI 96 (230)
T ss_pred CCceeeeeeccccCCC---EEeecccceehHHHHHHHhhcCCCeeCCcccccccc
Confidence 3467899999997776 6778999999999999999 45579999998753
No 8
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=5.6e-10 Score=108.05 Aligned_cols=50 Identities=32% Similarity=0.820 Sum_probs=44.8
Q ss_pred CCCcccccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCccccccccc
Q 016946 326 LHVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVVN 378 (380)
Q Consensus 326 ~~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~~ 378 (380)
.+....|+|||+....+ ..+||||+||+.||..|+..+..||+||....+
T Consensus 236 ~~a~~kC~LCLe~~~~p---SaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~p 285 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNP---SATPCGHIFCWSCILEWCSEKAECPLCREKFQP 285 (293)
T ss_pred CCCCCceEEEecCCCCC---CcCcCcchHHHHHHHHHHccccCCCcccccCCC
Confidence 35678999999998777 789999999999999999999999999987754
No 9
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.92 E-value=8.2e-10 Score=102.15 Aligned_cols=49 Identities=35% Similarity=0.742 Sum_probs=41.2
Q ss_pred CCcccccccccccccCCcceeccCCCcccHHHHHHHHhc----------------CCCCccccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQ----------------KNACPVCKAAVVN 378 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~----------------k~sCPvCR~~i~~ 378 (380)
..+..|+||++.+.++ +.++|||.||..||..|+.. ...||+||..|..
T Consensus 16 ~~~~~CpICld~~~dP---VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 16 GGDFDCNICLDQVRDP---VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CCccCCccCCCcCCCc---EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 4568899999998766 67899999999999999852 3479999998853
No 10
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.91 E-value=1e-09 Score=75.91 Aligned_cols=44 Identities=43% Similarity=1.138 Sum_probs=36.8
Q ss_pred cccccccccccCCcceeccCCCcccHHHHHHHHhc-CCCCccccccc
Q 016946 331 KCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQ-KNACPVCKAAV 376 (380)
Q Consensus 331 ~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~-k~sCPvCR~~i 376 (380)
.|+||++.+. +.+..++|||.||..|+..|+.. ...||+|+..+
T Consensus 1 ~C~iC~~~~~--~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFR--EPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhh--CceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999983 34455579999999999999997 77899999764
No 11
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.88 E-value=1.1e-09 Score=80.01 Aligned_cols=46 Identities=35% Similarity=0.861 Sum_probs=39.5
Q ss_pred cccccccccccccCCcceeccCCCc-ccHHHHHHHHhcCCCCcccccccc
Q 016946 329 DKKCTICQEEYEADDEMGKLDCGHS-FHIQCIKQWLSQKNACPVCKAAVV 377 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~LpCgH~-FH~~CI~~WL~~k~sCPvCR~~i~ 377 (380)
+..|.||++.+.. +..+||||. |+..|+..|+.....||+||++|.
T Consensus 2 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc---eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 5689999998665 477899999 999999999999999999999875
No 12
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.87 E-value=1.2e-09 Score=75.92 Aligned_cols=39 Identities=41% Similarity=1.017 Sum_probs=33.8
Q ss_pred ccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCccc
Q 016946 332 CTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVC 372 (380)
Q Consensus 332 CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvC 372 (380)
|+||++.+.. .++.++|||.||..||.+|++.+..||+|
T Consensus 1 C~iC~~~~~~--~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 8999999876 45678999999999999999998999998
No 13
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=1.5e-09 Score=114.93 Aligned_cols=50 Identities=34% Similarity=0.963 Sum_probs=44.8
Q ss_pred CcccccccccccccCCc--ceeccCCCcccHHHHHHHHhcCCCCcccccccc
Q 016946 328 VDKKCTICQEEYEADDE--MGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVV 377 (380)
Q Consensus 328 ~d~~CsICleef~~~e~--v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~ 377 (380)
.+..|+||+|++..++. ..+|+|+|+||..|++.||+++.+||+||..+.
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLY 341 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhh
Confidence 47889999999988655 578899999999999999999999999999554
No 14
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.76 E-value=5e-09 Score=74.40 Aligned_cols=38 Identities=34% Similarity=0.913 Sum_probs=30.4
Q ss_pred ccccccccccCCcceeccCCCcccHHHHHHHHhcC----CCCccc
Q 016946 332 CTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQK----NACPVC 372 (380)
Q Consensus 332 CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k----~sCPvC 372 (380)
|+||++.|.++ +.|+|||.|+..||..|+... ..||+|
T Consensus 1 CpiC~~~~~~P---v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP---VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE---EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc---cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999988 899999999999999999843 469998
No 15
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=6.6e-09 Score=94.56 Aligned_cols=52 Identities=33% Similarity=0.720 Sum_probs=43.9
Q ss_pred CCcccccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCcccccccccC
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVVNR 379 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~~~ 379 (380)
+....|+|||+.|..... ..+.|||+||..||+.-|.....||+|++.|..|
T Consensus 129 ~~~~~CPiCl~~~sek~~-vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVP-VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHK 180 (187)
T ss_pred ccccCCCceecchhhccc-cccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence 345789999999987633 4579999999999999999999999999877543
No 16
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.67 E-value=1.3e-08 Score=70.93 Aligned_cols=39 Identities=44% Similarity=1.117 Sum_probs=34.5
Q ss_pred ccccccccccCCcceeccCCCcccHHHHHHHHh--cCCCCccc
Q 016946 332 CTICQEEYEADDEMGKLDCGHSFHIQCIKQWLS--QKNACPVC 372 (380)
Q Consensus 332 CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~--~k~sCPvC 372 (380)
|+||++.+... +..++|||.||..||..|+. ....||+|
T Consensus 1 C~iC~~~~~~~--~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDP--VILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSE--EEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCC--CEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 89999998876 24789999999999999999 66689998
No 17
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.66 E-value=2.2e-08 Score=75.50 Aligned_cols=45 Identities=22% Similarity=0.412 Sum_probs=40.9
Q ss_pred ccccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCcccccccc
Q 016946 330 KKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVV 377 (380)
Q Consensus 330 ~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~ 377 (380)
..|+||++.+.++ ..++|||+|+..||..|+..+..||+|+..+.
T Consensus 2 ~~Cpi~~~~~~~P---v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMKDP---VILPSGQTYERRAIEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCCCC---EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCC
Confidence 5799999999876 67899999999999999999899999998774
No 18
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.65 E-value=1.8e-08 Score=81.89 Aligned_cols=50 Identities=36% Similarity=0.883 Sum_probs=39.4
Q ss_pred CcccccccccccccC--------C--cceeccCCCcccHHHHHHHHhc---CCCCcccccccc
Q 016946 328 VDKKCTICQEEYEAD--------D--EMGKLDCGHSFHIQCIKQWLSQ---KNACPVCKAAVV 377 (380)
Q Consensus 328 ~d~~CsICleef~~~--------e--~v~~LpCgH~FH~~CI~~WL~~---k~sCPvCR~~i~ 377 (380)
.++.|.||...|... | +++.-.|+|.||..||.+||.. +..||+||.+..
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 378899999988632 1 2333379999999999999994 568999998764
No 19
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.64 E-value=2.5e-08 Score=66.48 Aligned_cols=38 Identities=47% Similarity=1.204 Sum_probs=32.8
Q ss_pred ccccccccccCCcceeccCCCcccHHHHHHHHh-cCCCCccc
Q 016946 332 CTICQEEYEADDEMGKLDCGHSFHIQCIKQWLS-QKNACPVC 372 (380)
Q Consensus 332 CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~-~k~sCPvC 372 (380)
|+||++... ....++|||.||..||+.|+. ....||+|
T Consensus 1 C~iC~~~~~---~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELK---DPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCC---CcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 789999843 457889999999999999999 67789998
No 20
>PHA02926 zinc finger-like protein; Provisional
Probab=98.64 E-value=1.7e-08 Score=94.94 Aligned_cols=49 Identities=35% Similarity=0.885 Sum_probs=37.8
Q ss_pred CcccccccccccccC-----Ccceec-cCCCcccHHHHHHHHhcC------CCCccccccc
Q 016946 328 VDKKCTICQEEYEAD-----DEMGKL-DCGHSFHIQCIKQWLSQK------NACPVCKAAV 376 (380)
Q Consensus 328 ~d~~CsICleef~~~-----e~v~~L-pCgH~FH~~CI~~WL~~k------~sCPvCR~~i 376 (380)
.+..|+||+|..-.. -..+.| +|+|.||..||..|...+ .+||+||..+
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f 229 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRF 229 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCccee
Confidence 468999999985322 123455 899999999999999853 4699999865
No 21
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.64 E-value=2.2e-08 Score=71.40 Aligned_cols=44 Identities=32% Similarity=0.857 Sum_probs=38.3
Q ss_pred cccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCccccc
Q 016946 331 KCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKA 374 (380)
Q Consensus 331 ~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~ 374 (380)
.|.||++.|........|+|||+||..||..+......||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 49999999955556778899999999999999877779999985
No 22
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.56 E-value=4.1e-08 Score=100.10 Aligned_cols=48 Identities=29% Similarity=0.764 Sum_probs=42.7
Q ss_pred CCcccccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCcccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVV 377 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~ 377 (380)
+....|+||++.|... +.++|||.||..||..||.....||+|+..+.
T Consensus 24 e~~l~C~IC~d~~~~P---vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~ 71 (397)
T TIGR00599 24 DTSLRCHICKDFFDVP---VLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQ 71 (397)
T ss_pred ccccCCCcCchhhhCc---cCCCCCCchhHHHHHHHHhCCCCCCCCCCccc
Confidence 4568999999999776 57899999999999999998889999998764
No 23
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.49 E-value=9.2e-08 Score=76.53 Aligned_cols=49 Identities=35% Similarity=0.720 Sum_probs=37.9
Q ss_pred cccccccccccccCCcceec--cCCCcccHHHHHHHHhcCCCCcccccccc
Q 016946 329 DKKCTICQEEYEADDEMGKL--DCGHSFHIQCIKQWLSQKNACPVCKAAVV 377 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~L--pCgH~FH~~CI~~WL~~k~sCPvCR~~i~ 377 (380)
+..|+-|+.....+++-... .|.|.||..||.+||..++.||+|+.+..
T Consensus 31 m~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 31 MGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred cCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 45566666655555554333 79999999999999999999999998753
No 24
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.2e-07 Score=91.17 Aligned_cols=50 Identities=38% Similarity=0.848 Sum_probs=43.1
Q ss_pred CCcccccccccccccCCcceeccCCCcccHHHHHH-HHhcCCC-CcccccccccC
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQ-WLSQKNA-CPVCKAAVVNR 379 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~-WL~~k~s-CPvCR~~i~~~ 379 (380)
..+.+|+||++..... ..++|||+||+.||.. |-..+.. ||+||+.+.++
T Consensus 213 ~~d~kC~lC~e~~~~p---s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk 264 (271)
T COG5574 213 LADYKCFLCLEEPEVP---SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK 264 (271)
T ss_pred ccccceeeeecccCCc---ccccccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence 4588999999998776 8999999999999999 8776665 99999987653
No 25
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=2.3e-07 Score=96.05 Aligned_cols=48 Identities=31% Similarity=0.781 Sum_probs=40.4
Q ss_pred cccccccccccccCCcceeccCCCcccHHHHHHHHhcC-----CCCcccccccccC
Q 016946 329 DKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQK-----NACPVCKAAVVNR 379 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k-----~sCPvCR~~i~~~ 379 (380)
+..|+|||++.... .++.|||+||..||-++|... ..||+|+..|..|
T Consensus 186 ~~~CPICL~~~~~p---~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~k 238 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP---VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLK 238 (513)
T ss_pred CCcCCcccCCCCcc---cccccCceeeHHHHHHHHhhhcccCCccCCchhhhcccc
Confidence 67899999998776 566799999999999988743 4799999988653
No 26
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.18 E-value=9.9e-07 Score=63.12 Aligned_cols=38 Identities=32% Similarity=0.883 Sum_probs=22.3
Q ss_pred ccccccccccCC-cceeccCCCcccHHHHHHHHhc----CCCCc
Q 016946 332 CTICQEEYEADD-EMGKLDCGHSFHIQCIKQWLSQ----KNACP 370 (380)
Q Consensus 332 CsICleef~~~e-~v~~LpCgH~FH~~CI~~WL~~----k~sCP 370 (380)
|+||.+ |...+ .-..|+|||+|+.+||.+|+.. ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 76533 3467899999999999999984 33676
No 27
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=5.5e-07 Score=86.79 Aligned_cols=50 Identities=36% Similarity=0.849 Sum_probs=41.9
Q ss_pred CCcccccccccccccCC-------cceeccCCCcccHHHHHHHHh--cCCCCccccccc
Q 016946 327 HVDKKCTICQEEYEADD-------EMGKLDCGHSFHIQCIKQWLS--QKNACPVCKAAV 376 (380)
Q Consensus 327 ~~d~~CsICleef~~~e-------~v~~LpCgH~FH~~CI~~WL~--~k~sCPvCR~~i 376 (380)
.++..|+||-..+.... .+.+|.|+|+||..||+-|.. .+.+||.|+..+
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekV 280 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKV 280 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHh
Confidence 35788999988776553 577899999999999999976 677999999866
No 28
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.14 E-value=8.4e-07 Score=87.90 Aligned_cols=47 Identities=34% Similarity=0.724 Sum_probs=42.9
Q ss_pred cccccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCccccccccc
Q 016946 329 DKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVVN 378 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~~ 378 (380)
-..|-||.|.|..+ .++||+|.||.-||..+|..+..||.|..++.+
T Consensus 23 lLRC~IC~eyf~ip---~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 23 LLRCGICFEYFNIP---MITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred HHHHhHHHHHhcCc---eeccccchHHHHHHHHHhccCCCCCceecccch
Confidence 46799999999988 778999999999999999999999999988753
No 29
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.11 E-value=2.1e-06 Score=62.95 Aligned_cols=42 Identities=26% Similarity=0.834 Sum_probs=32.5
Q ss_pred cccccccccccCCcceeccCC-----CcccHHHHHHHHhc--CCCCcccc
Q 016946 331 KCTICQEEYEADDEMGKLDCG-----HSFHIQCIKQWLSQ--KNACPVCK 373 (380)
Q Consensus 331 ~CsICleef~~~e~v~~LpCg-----H~FH~~CI~~WL~~--k~sCPvCR 373 (380)
.|-||++...+ +....+||. |.||..||.+|+.. +.+||+|+
T Consensus 1 ~CrIC~~~~~~-~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDE-GDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCC-CCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 48999994344 444567885 89999999999974 45899995
No 30
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.07 E-value=2.5e-06 Score=67.28 Aligned_cols=48 Identities=23% Similarity=0.422 Sum_probs=38.6
Q ss_pred CcccccccccccccCCcceeccCCCcccHHHHHHHHhc-CCCCccccccccc
Q 016946 328 VDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQ-KNACPVCKAAVVN 378 (380)
Q Consensus 328 ~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~-k~sCPvCR~~i~~ 378 (380)
+...|+||.+-+.++ ++++|||+|...||..||.. ...||+|+..+..
T Consensus 3 ~~f~CpIt~~lM~dP---Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 3 DEFLCPITGELMRDP---VILPSGHTYERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGGB-TTTSSB-SSE---EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred cccCCcCcCcHhhCc---eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 357899999999988 78999999999999999998 8899999887754
No 31
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=1.5e-06 Score=80.59 Aligned_cols=45 Identities=31% Similarity=0.761 Sum_probs=40.3
Q ss_pred CCcccccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKA 374 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~ 374 (380)
.+...|+||++.|... ..|+|+|.||..||..|+.....||.||.
T Consensus 11 ~~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP---VLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhcC---ccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 4578899999999988 78899999999999999986678999993
No 32
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.05 E-value=6e-07 Score=70.53 Aligned_cols=50 Identities=28% Similarity=0.844 Sum_probs=24.3
Q ss_pred cccccccccccccCCcceec-----cCCCcccHHHHHHHHhc----C-------CCCccccccccc
Q 016946 329 DKKCTICQEEYEADDEMGKL-----DCGHSFHIQCIKQWLSQ----K-------NACPVCKAAVVN 378 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~L-----pCgH~FH~~CI~~WL~~----k-------~sCPvCR~~i~~ 378 (380)
+..|.||+..+...+.+-.+ .|++.||..||.+||.. + ..||.|+++|.-
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 46899999987633322122 59999999999999982 1 159999998864
No 33
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.00 E-value=1.9e-06 Score=94.21 Aligned_cols=52 Identities=23% Similarity=0.784 Sum_probs=39.7
Q ss_pred CCCcccccccccccccCCc----ceeccCCCcccHHHHHHHHh--cCCCCcccccccc
Q 016946 326 LHVDKKCTICQEEYEADDE----MGKLDCGHSFHIQCIKQWLS--QKNACPVCKAAVV 377 (380)
Q Consensus 326 ~~~d~~CsICleef~~~e~----v~~LpCgH~FH~~CI~~WL~--~k~sCPvCR~~i~ 377 (380)
..+.++|+||+.-+..-|. .++-.|.|.||..||++|+. ..+.||+||.++.
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 3557899999987762111 12334999999999999999 5668999998875
No 34
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=2e-06 Score=68.39 Aligned_cols=50 Identities=30% Similarity=0.767 Sum_probs=37.2
Q ss_pred CcccccccccccccCCcce---------ec-cCCCcccHHHHHHHHh---cCCCCcccccccc
Q 016946 328 VDKKCTICQEEYEADDEMG---------KL-DCGHSFHIQCIKQWLS---QKNACPVCKAAVV 377 (380)
Q Consensus 328 ~d~~CsICleef~~~e~v~---------~L-pCgH~FH~~CI~~WL~---~k~sCPvCR~~i~ 377 (380)
.++.|-||.-.|...-+-- .+ .|.|.||..||.+||. .+..||+||.+..
T Consensus 19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 3568999998886432111 22 5999999999999998 3457999998753
No 35
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=3.4e-06 Score=70.67 Aligned_cols=29 Identities=41% Similarity=1.059 Sum_probs=26.8
Q ss_pred cCCCcccHHHHHHHHhcCCCCcccccccc
Q 016946 349 DCGHSFHIQCIKQWLSQKNACPVCKAAVV 377 (380)
Q Consensus 349 pCgH~FH~~CI~~WL~~k~sCPvCR~~i~ 377 (380)
.|.|.||..||.+||..++.||+|.++..
T Consensus 80 ~CNHaFH~hCisrWlktr~vCPLdn~eW~ 108 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRNVCPLDNKEWV 108 (114)
T ss_pred ecchHHHHHHHHHHHhhcCcCCCcCccee
Confidence 69999999999999999999999987653
No 36
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=2.7e-06 Score=87.74 Aligned_cols=51 Identities=33% Similarity=0.741 Sum_probs=39.3
Q ss_pred CcccccccccccccC----Cc----------ceeccCCCcccHHHHHHHHh-cCCCCccccccccc
Q 016946 328 VDKKCTICQEEYEAD----DE----------MGKLDCGHSFHIQCIKQWLS-QKNACPVCKAAVVN 378 (380)
Q Consensus 328 ~d~~CsICleef~~~----e~----------v~~LpCgH~FH~~CI~~WL~-~k~sCPvCR~~i~~ 378 (380)
....|+||+.+...- +. -..+||.|+||..|+.+|+. .+-.||+||.++.+
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 346899999986431 11 11349999999999999999 56699999999865
No 37
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.96 E-value=3.7e-06 Score=81.94 Aligned_cols=47 Identities=30% Similarity=0.721 Sum_probs=42.3
Q ss_pred CcccccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCcccccccc
Q 016946 328 VDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVV 377 (380)
Q Consensus 328 ~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~ 377 (380)
....|-||-+.|..+ ..++|||.||.-||+..|..+..||+||.+..
T Consensus 24 s~lrC~IC~~~i~ip---~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~ 70 (391)
T COG5432 24 SMLRCRICDCRISIP---CETTCGHTFCSLCIRRHLGTQPFCPVCREDPC 70 (391)
T ss_pred hHHHhhhhhheeecc---eecccccchhHHHHHHHhcCCCCCccccccHH
Confidence 357899999999887 77799999999999999999999999998653
No 38
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.77 E-value=1.1e-05 Score=79.07 Aligned_cols=50 Identities=24% Similarity=0.747 Sum_probs=42.7
Q ss_pred CcccccccccccccCCcceeccCCCcccHHHHHHHHh-----------------------cCCCCcccccccc
Q 016946 328 VDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLS-----------------------QKNACPVCKAAVV 377 (380)
Q Consensus 328 ~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~-----------------------~k~sCPvCR~~i~ 377 (380)
....|.|||-.|..++.+++++|-|.||..|+.++|. .+..|||||..|.
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 3578999999999999999999999999999998763 1226999998774
No 39
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=1.7e-05 Score=79.27 Aligned_cols=49 Identities=31% Similarity=0.669 Sum_probs=42.1
Q ss_pred CCcccccccccccccCCcceeccCCC-cccHHHHHHHHhcCCCCccccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGH-SFHIQCIKQWLSQKNACPVCKAAVVN 378 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH-~FH~~CI~~WL~~k~sCPvCR~~i~~ 378 (380)
+...+|.|||.+..+- ..|||.| ..|..|.+...-+.+.||+||.+|..
T Consensus 288 ~~gkeCVIClse~rdt---~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESRDT---VVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCcce---EEecchhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 3467899999997765 7899999 78999999987789999999998753
No 40
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=5.3e-06 Score=82.70 Aligned_cols=51 Identities=29% Similarity=0.701 Sum_probs=41.5
Q ss_pred CCcccccccccccccCCcceeccCCCcccHHHHHHHHh-cCCCCcccccccccC
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLS-QKNACPVCKAAVVNR 379 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~-~k~sCPvCR~~i~~~ 379 (380)
..+..|+|||+-+... +....|+|.||.+||..-|+ ..+.||.||+.+..+
T Consensus 41 ~~~v~c~icl~llk~t--mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKT--MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred hhhhccHHHHHHHHhh--cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccc
Confidence 3467899999997754 33447999999999988888 677999999988765
No 41
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.51 E-value=3.6e-05 Score=78.87 Aligned_cols=49 Identities=29% Similarity=0.798 Sum_probs=37.4
Q ss_pred CCcccccccccccccCC-cceeccCCCcccHHHHHHHHhcCCCCcccccccc
Q 016946 327 HVDKKCTICQEEYEADD-EMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVV 377 (380)
Q Consensus 327 ~~d~~CsICleef~~~e-~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~ 377 (380)
.+-.+|+||||.+...- .+....|.|.||..|+..|. ..+||+||....
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~--~~scpvcR~~q~ 222 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW--DSSCPVCRYCQS 222 (493)
T ss_pred ccCCCcchhHhhcCccccceeeeecccccchHHHhhcc--cCcChhhhhhcC
Confidence 34578999999876542 23444899999999999994 568999987543
No 42
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.46 E-value=2.8e-05 Score=84.00 Aligned_cols=51 Identities=24% Similarity=0.558 Sum_probs=45.5
Q ss_pred CCcccccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCcccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVV 377 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~ 377 (380)
.....|+||+..|.+.......+|+|.||..||..|-+.-.+||+||..+.
T Consensus 121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~ 171 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFG 171 (1134)
T ss_pred hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhh
Confidence 446789999999998877777799999999999999999999999998764
No 43
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.45 E-value=2.5e-05 Score=60.39 Aligned_cols=46 Identities=26% Similarity=0.635 Sum_probs=24.0
Q ss_pred cccccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCccccccccc
Q 016946 329 DKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVVN 378 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~~ 378 (380)
-..|++|.+-+..+ +....|.|+||..||..-+. ..||+|.+++..
T Consensus 7 lLrCs~C~~~l~~p--v~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~ 52 (65)
T PF14835_consen 7 LLRCSICFDILKEP--VCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWI 52 (65)
T ss_dssp TTS-SSS-S--SS---B---SSS--B-TTTGGGGTT--TB-SSS--B-S-
T ss_pred hcCCcHHHHHhcCC--ceeccCccHHHHHHhHHhcC--CCCCCcCChHHH
Confidence 46799999998766 33348999999999988554 349999998754
No 44
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=5.6e-05 Score=76.12 Aligned_cols=50 Identities=36% Similarity=0.973 Sum_probs=38.5
Q ss_pred CCcccccccccccccCC----cceec-cCCCcccHHHHHHHHh--c-----CCCCccccccc
Q 016946 327 HVDKKCTICQEEYEADD----EMGKL-DCGHSFHIQCIKQWLS--Q-----KNACPVCKAAV 376 (380)
Q Consensus 327 ~~d~~CsICleef~~~e----~v~~L-pCgH~FH~~CI~~WL~--~-----k~sCPvCR~~i 376 (380)
..+.+|.||++.....- ..++| +|.|.||..||..|-. + .+.||.||...
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 45789999999865542 12344 5999999999999983 4 57899999754
No 45
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=4.8e-05 Score=57.03 Aligned_cols=47 Identities=28% Similarity=0.631 Sum_probs=36.8
Q ss_pred CcccccccccccccCCcceeccCCC-cccHHHHHHHHh-cCCCCcccccccc
Q 016946 328 VDKKCTICQEEYEADDEMGKLDCGH-SFHIQCIKQWLS-QKNACPVCKAAVV 377 (380)
Q Consensus 328 ~d~~CsICleef~~~e~v~~LpCgH-~FH~~CI~~WL~-~k~sCPvCR~~i~ 377 (380)
.+++|.||+|...+. +.--||| -+|++|-.+.+. .+..||+||++|-
T Consensus 6 ~~dECTICye~pvds---VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 6 WSDECTICYEHPVDS---VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cccceeeeccCcchH---HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 358899999986654 3448999 689999666555 8889999999874
No 46
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.00014 Score=78.66 Aligned_cols=46 Identities=28% Similarity=0.731 Sum_probs=39.6
Q ss_pred cccccccccccccCCcceeccCCCcccHHHHHHHHh-cCCCCcccccccc
Q 016946 329 DKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLS-QKNACPVCKAAVV 377 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~-~k~sCPvCR~~i~ 377 (380)
...|+.|-..+.+. +++.|||+||..||..-+. +.-.||.|.+.+.
T Consensus 643 ~LkCs~Cn~R~Kd~---vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFg 689 (698)
T KOG0978|consen 643 LLKCSVCNTRWKDA---VITKCGHVFCEECVQTRYETRQRKCPKCNAAFG 689 (698)
T ss_pred ceeCCCccCchhhH---HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 46899999777664 6779999999999999998 7779999998764
No 47
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.00037 Score=67.72 Aligned_cols=49 Identities=27% Similarity=0.537 Sum_probs=40.8
Q ss_pred CCcccccccccccccCCcceeccCCCcccHHHHHHHHh--cCCCCcccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLS--QKNACPVCKAAVV 377 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~--~k~sCPvCR~~i~ 377 (380)
..+.+|++|.+....+ ....+|+|+||..||..-+. ...+||.|..++.
T Consensus 237 t~~~~C~~Cg~~PtiP--~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIP--HVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCC--eeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 5678999999997766 34558999999999998766 5689999998775
No 48
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.00037 Score=66.15 Aligned_cols=49 Identities=24% Similarity=0.725 Sum_probs=41.8
Q ss_pred cccccccccccccCCcceeccCCCcccHHHHHHHHhc--------CCCCccccccccc
Q 016946 329 DKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQ--------KNACPVCKAAVVN 378 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~--------k~sCPvCR~~i~~ 378 (380)
...|..|--.+..+|. ++|-|-|+||+.|++.|-.. --.||.|..+|++
T Consensus 50 ~pNC~LC~t~La~gdt-~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDT-TRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred CCCCceeCCccccCcc-eeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 5689999999988876 58999999999999999763 2279999999875
No 49
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.00052 Score=68.81 Aligned_cols=52 Identities=31% Similarity=0.509 Sum_probs=44.3
Q ss_pred CCCCCCcccccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCcccccccc
Q 016946 323 HLPLHVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVV 377 (380)
Q Consensus 323 ~~~~~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~ 377 (380)
.++..++..|+||+...... ...||+|.-|.+||.+-|...+.|=.|++.+.
T Consensus 416 ~lp~sEd~lCpICyA~pi~A---vf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 416 DLPDSEDNLCPICYAGPINA---VFAPCSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred CCCCcccccCcceecccchh---hccCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence 34556788999999875543 56699999999999999999999999999876
No 50
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.00023 Score=69.68 Aligned_cols=93 Identities=27% Similarity=0.415 Sum_probs=57.7
Q ss_pred CCCCCCCHHHHHHhhhhccccCCCCCH--HHHHHHhhhccchhhccccCCCCCCCcccccccccccccCCcceeccCCC-
Q 016946 276 LDVDNMSYEELLELGDRIGYVSTGLKE--DEIGRCLRKLKNSIINDLSSHLPLHVDKKCTICQEEYEADDEMGKLDCGH- 352 (380)
Q Consensus 276 lDvd~msYEeLLeL~e~ig~v~~GLse--~~I~~~l~klk~~~~~~~~~~~~~~~d~~CsICleef~~~e~v~~LpCgH- 352 (380)
.|.++++..+|+++.+.-+..=.|-.+ +-+.+..+.++..... ........+.-|.||++...+. ..|+|||
T Consensus 247 ~d~Eg~~v~qLke~l~~d~vsy~gCcek~el~d~vtrl~k~~~g~--~~~~s~~~~~LC~ICmDaP~DC---vfLeCGHm 321 (350)
T KOG4275|consen 247 LDEEGLTVRQLKEILDDDFVSYKGCCEKYELDDRVTRLYKGNDGE--QHSRSLATRRLCAICMDAPRDC---VFLECGHM 321 (350)
T ss_pred cccccchHHHhhhhhhccCCcccchhHHHHHHHHHHHHHhccccc--ccccchhHHHHHHHHhcCCcce---EEeecCcE
Confidence 577888888998877654433234332 2233333332221111 1111112367899999998887 8999999
Q ss_pred cccHHHHHHHHhcCCCCcccccccc
Q 016946 353 SFHIQCIKQWLSQKNACPVCKAAVV 377 (380)
Q Consensus 353 ~FH~~CI~~WL~~k~sCPvCR~~i~ 377 (380)
+-|..|-+. -+.|||||..|.
T Consensus 322 VtCt~CGkr----m~eCPICRqyi~ 342 (350)
T KOG4275|consen 322 VTCTKCGKR----MNECPICRQYIV 342 (350)
T ss_pred Eeehhhccc----cccCchHHHHHH
Confidence 678888765 348999998764
No 51
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=97.02 E-value=0.00039 Score=79.10 Aligned_cols=50 Identities=36% Similarity=0.817 Sum_probs=41.2
Q ss_pred CCcccccccccccccCCcceeccCCCcccHHHHHHHHhcCC----------CCccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKN----------ACPVCKAAV 376 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~----------sCPvCR~~i 376 (380)
..++.|.||.-+--..-+.++|.|+|.||+.|...-|++.- +||+|+.+|
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~I 3543 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKI 3543 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchh
Confidence 45789999998866556778999999999999998777332 799999876
No 52
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.0004 Score=71.27 Aligned_cols=49 Identities=29% Similarity=0.786 Sum_probs=43.3
Q ss_pred CCcccccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCccccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVVN 378 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~~ 378 (380)
..+..|.||+.-+... +.+||||.||..||.+-|.....||+||.++..
T Consensus 82 ~sef~c~vc~~~l~~p---v~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPP---VVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCC---ccccccccccHHHHHHHhccCCCCccccccccc
Confidence 3478899999998877 777999999999999999999999999998763
No 53
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.93 E-value=0.00032 Score=71.23 Aligned_cols=45 Identities=27% Similarity=0.835 Sum_probs=35.8
Q ss_pred ccccccccccccCCcceeccCCCcccHHHHHHHHh--cCCCCcccccccc
Q 016946 330 KKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLS--QKNACPVCKAAVV 377 (380)
Q Consensus 330 ~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~--~k~sCPvCR~~i~ 377 (380)
.-|-||-|.-. .|.+-||||..|..|+..|-. ...+||.||.+|-
T Consensus 370 eLCKICaendK---dvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK 416 (563)
T KOG1785|consen 370 ELCKICAENDK---DVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIK 416 (563)
T ss_pred HHHHHhhccCC---CcccccccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence 35999998722 234559999999999999985 3679999999874
No 54
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.86 E-value=0.00056 Score=51.79 Aligned_cols=42 Identities=31% Similarity=0.736 Sum_probs=29.2
Q ss_pred CcccccccccccccCCcceeccCCCcccHHHHHHHHh--cCCCCcc
Q 016946 328 VDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLS--QKNACPV 371 (380)
Q Consensus 328 ~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~--~k~sCPv 371 (380)
....|+|.+..|.++ +....|||+|-...|.+||. ....||+
T Consensus 10 ~~~~CPiT~~~~~~P--V~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDP--VKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSE--EEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCC--cCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 357899999999865 66679999999999999994 4557999
No 55
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.64 E-value=0.00084 Score=68.88 Aligned_cols=49 Identities=29% Similarity=0.709 Sum_probs=41.8
Q ss_pred CCcccccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCcccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVV 377 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~ 377 (380)
..+..|+||...+.++ +..+.|||.||..||..|+..+..||.|+..+.
T Consensus 19 ~~~l~C~~C~~vl~~p--~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~ 67 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDP--VQTTTCGHRFCAGCLLESLSNHQKCPVCRQELT 67 (391)
T ss_pred cccccCccccccccCC--CCCCCCCCcccccccchhhccCcCCcccccccc
Confidence 4568999999998876 223699999999999999999999999987653
No 56
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.60 E-value=0.00052 Score=68.21 Aligned_cols=46 Identities=24% Similarity=0.650 Sum_probs=39.7
Q ss_pred cccccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCccccccc
Q 016946 329 DKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAV 376 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i 376 (380)
-..|.+|-..|.+. ..+.-|-|.||..||...|...+.||+|...|
T Consensus 15 ~itC~LC~GYliDA--TTI~eCLHTFCkSCivk~l~~~~~CP~C~i~i 60 (331)
T KOG2660|consen 15 HITCRLCGGYLIDA--TTITECLHTFCKSCIVKYLEESKYCPTCDIVI 60 (331)
T ss_pred ceehhhccceeecc--hhHHHHHHHHHHHHHHHHHHHhccCCccceec
Confidence 46899999998876 33447999999999999999999999998765
No 57
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.58 E-value=0.00069 Score=68.71 Aligned_cols=48 Identities=27% Similarity=0.826 Sum_probs=39.6
Q ss_pred CCcccccccccccccC-CcceeccCCCcccHHHHHHHHhcCC--CCccccc
Q 016946 327 HVDKKCTICQEEYEAD-DEMGKLDCGHSFHIQCIKQWLSQKN--ACPVCKA 374 (380)
Q Consensus 327 ~~d~~CsICleef~~~-e~v~~LpCgH~FH~~CI~~WL~~k~--sCPvCR~ 374 (380)
+.+..|-.|-+.|... +.+-.|||.|+||..|+...|+.+. +||-||+
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 3467899999988654 5577889999999999999998544 8999984
No 58
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.29 E-value=0.0017 Score=60.76 Aligned_cols=46 Identities=33% Similarity=0.704 Sum_probs=40.6
Q ss_pred ccccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCccccccccc
Q 016946 330 KKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVVN 378 (380)
Q Consensus 330 ~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~~ 378 (380)
..|.||-++|+.+ +.+.|||.||..|.-.-+..-..|-+|.+....
T Consensus 197 F~C~iCKkdy~sp---vvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~G 242 (259)
T COG5152 197 FLCGICKKDYESP---VVTECGHSFCSLCAIRKYQKGDECGVCGKATYG 242 (259)
T ss_pred eeehhchhhccch---hhhhcchhHHHHHHHHHhccCCcceecchhhcc
Confidence 5799999999988 788999999999998888888899999876543
No 59
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=96.11 E-value=0.0024 Score=52.52 Aligned_cols=34 Identities=29% Similarity=0.730 Sum_probs=28.0
Q ss_pred CCCcccccccccccccCCcceeccCCCcccHHHHH
Q 016946 326 LHVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIK 360 (380)
Q Consensus 326 ~~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~ 360 (380)
...+..|++|-..+.. ......||||+||..|++
T Consensus 75 i~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 3557889999999877 456667999999999985
No 60
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=95.96 E-value=0.028 Score=62.05 Aligned_cols=46 Identities=33% Similarity=0.881 Sum_probs=35.4
Q ss_pred cccccccccccccCCcceec-cCCCcccHHHHHHHHhcCC-------CCccccc
Q 016946 329 DKKCTICQEEYEADDEMGKL-DCGHSFHIQCIKQWLSQKN-------ACPVCKA 374 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~L-pCgH~FH~~CI~~WL~~k~-------sCPvCR~ 374 (380)
..+|.||++.+.....+-.- .|-|+||+.||..|-.... .||.|..
T Consensus 191 ~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 191 KYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred ceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 57899999998766544322 5999999999999987321 5999983
No 61
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.80 E-value=0.0075 Score=58.12 Aligned_cols=52 Identities=15% Similarity=0.369 Sum_probs=46.0
Q ss_pred CcccccccccccccCCcceec-cCCCcccHHHHHHHHhcCCCCcccccccccC
Q 016946 328 VDKKCTICQEEYEADDEMGKL-DCGHSFHIQCIKQWLSQKNACPVCKAAVVNR 379 (380)
Q Consensus 328 ~d~~CsICleef~~~e~v~~L-pCgH~FH~~CI~~WL~~k~sCPvCR~~i~~~ 379 (380)
....|+||.+.+...-....| +|||+|+..|+...+..-..||+|-.++-+|
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdr 272 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDR 272 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCccc
Confidence 356899999999988777788 8999999999999999999999999887654
No 62
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=95.62 E-value=0.0062 Score=44.25 Aligned_cols=40 Identities=30% Similarity=0.806 Sum_probs=27.3
Q ss_pred ccccccccccCCcceeccCC--C---cccHHHHHHHHh--cCCCCccc
Q 016946 332 CTICQEEYEADDEMGKLDCG--H---SFHIQCIKQWLS--QKNACPVC 372 (380)
Q Consensus 332 CsICleef~~~e~v~~LpCg--H---~FH~~CI~~WL~--~k~sCPvC 372 (380)
|-||++.....+. ...||. = ..|..||.+|+. ....|++|
T Consensus 1 CrIC~~~~~~~~~-li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEP-LISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCc-eecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 6799998766542 345654 3 789999999998 55679988
No 63
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.0096 Score=54.91 Aligned_cols=52 Identities=25% Similarity=0.675 Sum_probs=37.0
Q ss_pred cccccccccccccCCc---c-eeccCCCcccHHHHHHHHhc------C-----CCCcccccccccCC
Q 016946 329 DKKCTICQEEYEADDE---M-GKLDCGHSFHIQCIKQWLSQ------K-----NACPVCKAAVVNRC 380 (380)
Q Consensus 329 d~~CsICleef~~~e~---v-~~LpCgH~FH~~CI~~WL~~------k-----~sCPvCR~~i~~~~ 380 (380)
-..|.||+..--++.. + --..||..||.-|+..||+. + ..||.|..+|.-||
T Consensus 165 ~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialKm 231 (234)
T KOG3268|consen 165 LGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALKM 231 (234)
T ss_pred hhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceeec
Confidence 3568999876444421 1 12369999999999999982 1 26999999887654
No 64
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.0044 Score=56.31 Aligned_cols=30 Identities=33% Similarity=0.695 Sum_probs=27.3
Q ss_pred CCcccccccccccccCCcceeccCCCcccH
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHI 356 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~ 356 (380)
.+..+|.||||+++.++.+.+|||--+||.
T Consensus 175 ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 175 DDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred ccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 456789999999999999999999999995
No 65
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=0.0091 Score=61.14 Aligned_cols=46 Identities=30% Similarity=0.546 Sum_probs=37.2
Q ss_pred cccccccccccccCCcceeccCCCcccHHHHHHHHhc--------CCCCccccc
Q 016946 329 DKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQ--------KNACPVCKA 374 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~--------k~sCPvCR~ 374 (380)
-..|.||+++....+-+..|||+|+||..|++.++.. .-.||-|+-
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred cccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 4679999999776677888999999999999999872 226876643
No 66
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=95.34 E-value=0.009 Score=52.73 Aligned_cols=38 Identities=24% Similarity=0.613 Sum_probs=30.9
Q ss_pred cccccccccccccCCcceeccCC------CcccHHHHHHHHhcC
Q 016946 329 DKKCTICQEEYEADDEMGKLDCG------HSFHIQCIKQWLSQK 366 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~LpCg------H~FH~~CI~~WL~~k 366 (380)
..+|.||++.+...+-++.++|| |.||.+|+++|-..+
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~ 69 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRER 69 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhc
Confidence 46899999999885557777887 899999999994433
No 67
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.0063 Score=59.92 Aligned_cols=46 Identities=26% Similarity=0.509 Sum_probs=41.0
Q ss_pred cccccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCcccccccc
Q 016946 329 DKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVV 377 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~ 377 (380)
...|-||-..|..+ +++.|+|.||..|...-|.....|++|...+-
T Consensus 241 Pf~c~icr~~f~~p---Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 241 PFKCFICRKYFYRP---VVTKCGHYFCEVCALKPYQKGEKCYVCSQQTH 286 (313)
T ss_pred Cccccccccccccc---hhhcCCceeehhhhccccccCCcceecccccc
Confidence 35799999999988 88899999999999988888899999987653
No 68
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.26 E-value=0.015 Score=42.65 Aligned_cols=44 Identities=27% Similarity=0.752 Sum_probs=23.1
Q ss_pred ccccccccccCCcceec--cCCCcccHHHHHHHHh-cCCCCccccccc
Q 016946 332 CTICQEEYEADDEMGKL--DCGHSFHIQCIKQWLS-QKNACPVCKAAV 376 (380)
Q Consensus 332 CsICleef~~~e~v~~L--pCgH~FH~~CI~~WL~-~k~sCPvCR~~i 376 (380)
|++|.+++...+. ..+ +||+.++..|...-+. ....||-||.+.
T Consensus 1 cp~C~e~~d~~d~-~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDK-DFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCT-T--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCC-ccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 7899999844332 233 6999999999999887 688999999863
No 69
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.19 E-value=0.016 Score=56.23 Aligned_cols=50 Identities=22% Similarity=0.529 Sum_probs=40.3
Q ss_pred CCcccccccccccccCCcceec-cCCCcccHHHHHHHHhcCCCCcccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKL-DCGHSFHIQCIKQWLSQKNACPVCKAAVV 377 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~L-pCgH~FH~~CI~~WL~~k~sCPvCR~~i~ 377 (380)
.....|+|+..+|......+.| +|||+|...+|.+.- ....||+|-.++.
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~ 161 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFT 161 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccc
Confidence 4567899999999665556666 999999999999973 3567999988764
No 70
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.04 E-value=0.013 Score=64.49 Aligned_cols=43 Identities=28% Similarity=0.842 Sum_probs=35.9
Q ss_pred cccccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCccccccc
Q 016946 329 DKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAV 376 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i 376 (380)
..+|.+|--.+..+ ++...|||.||..|+. .....||-|+.++
T Consensus 840 ~skCs~C~~~LdlP--~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 840 VSKCSACEGTLDLP--FVHFLCGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred eeeecccCCccccc--eeeeecccHHHHHhhc---cCcccCCccchhh
Confidence 46899998887765 6777999999999998 5667899998754
No 71
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.85 E-value=0.024 Score=57.15 Aligned_cols=47 Identities=23% Similarity=0.682 Sum_probs=37.9
Q ss_pred CCcccccccccccccCCcceeccCCCcccHHHHHHH--HhcCCCCccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQW--LSQKNACPVCKAAV 376 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~W--L~~k~sCPvCR~~i 376 (380)
++...|.||.+.+.-- ..+||+|..|-.|.... |-.++.||+||++.
T Consensus 59 Een~~C~ICA~~~TYs---~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 59 EENMNCQICAGSTTYS---ARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred cccceeEEecCCceEE---EeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 5567899999986543 68899999999998765 33788999999865
No 72
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.73 E-value=0.015 Score=58.68 Aligned_cols=44 Identities=25% Similarity=0.603 Sum_probs=32.0
Q ss_pred CcccccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCcccccccc
Q 016946 328 VDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVV 377 (380)
Q Consensus 328 ~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~ 377 (380)
....|.||++++... ..+||||.-| |+.-- +.-.+||+||..|.
T Consensus 304 ~p~lcVVcl~e~~~~---~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKSA---VFVPCGHVCC--CTLCS-KHLPQCPVCRQRIR 347 (355)
T ss_pred CCCceEEecCCccce---eeecCCcEEE--chHHH-hhCCCCchhHHHHH
Confidence 357899999997764 7889999866 55332 23445999998763
No 73
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=94.64 E-value=0.015 Score=61.35 Aligned_cols=47 Identities=28% Similarity=0.719 Sum_probs=37.8
Q ss_pred CCcccccccccccccCCcceeccCCCcccHHHHHHHHh-----cCCCCccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLS-----QKNACPVCKAAV 376 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~-----~k~sCPvCR~~i 376 (380)
..+..|.+|-+.-++. +...|.|.||..||+.++. ..-+||+|-..+
T Consensus 534 k~~~~C~lc~d~aed~---i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDY---IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred cCceeecccCChhhhh---HhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccc
Confidence 3457899999986654 6779999999999999876 344899997765
No 74
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=94.63 E-value=0.034 Score=50.42 Aligned_cols=46 Identities=28% Similarity=0.879 Sum_probs=34.0
Q ss_pred CCcccccccccccccCCcceeccCC--C---cccHHHHHHHHh--cCCCCccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCG--H---SFHIQCIKQWLS--QKNACPVCKAAV 376 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCg--H---~FH~~CI~~WL~--~k~sCPvCR~~i 376 (380)
..+..|-||.++... . .-||. . ..|..|+..|+. ....|++|+++.
T Consensus 6 ~~~~~CRIC~~~~~~--~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y 58 (162)
T PHA02825 6 LMDKCCWICKDEYDV--V--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPY 58 (162)
T ss_pred CCCCeeEecCCCCCC--c--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeE
Confidence 457889999988432 1 24654 4 559999999998 455899998864
No 75
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.11 E-value=0.0047 Score=62.80 Aligned_cols=49 Identities=27% Similarity=0.662 Sum_probs=43.2
Q ss_pred cccccccccccccC-CcceeccCCCcccHHHHHHHHhcCCCCcccccccc
Q 016946 329 DKKCTICQEEYEAD-DEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVV 377 (380)
Q Consensus 329 d~~CsICleef~~~-e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~ 377 (380)
...|+||.+.|... +.+..+.|||.||.+||.+||.....||.|+.++.
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~ 245 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELP 245 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhh
Confidence 46799999998776 66778899999999999999999999999998764
No 76
>PHA02862 5L protein; Provisional
Probab=94.04 E-value=0.043 Score=49.11 Aligned_cols=48 Identities=25% Similarity=0.689 Sum_probs=32.0
Q ss_pred cccccccccccccCCc-ceeccCCCcccHHHHHHHHh--cCCCCccccccc
Q 016946 329 DKKCTICQEEYEADDE-MGKLDCGHSFHIQCIKQWLS--QKNACPVCKAAV 376 (380)
Q Consensus 329 d~~CsICleef~~~e~-v~~LpCgH~FH~~CI~~WL~--~k~sCPvCR~~i 376 (380)
.+.|=||.++-.+... -....--..-|..|+.+|+. .+..|++|+.+.
T Consensus 2 ~diCWIC~~~~~e~~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY 52 (156)
T PHA02862 2 SDICWICNDVCDERNNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKY 52 (156)
T ss_pred CCEEEEecCcCCCCcccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeE
Confidence 4679999998432200 00000024789999999998 566899999875
No 77
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=93.85 E-value=0.028 Score=42.35 Aligned_cols=44 Identities=25% Similarity=0.573 Sum_probs=33.4
Q ss_pred cccccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCcccccccc
Q 016946 329 DKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVV 377 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~ 377 (380)
...|..|...-..+ ..|||||+.+..|.. +++.+-||+|.+.+.
T Consensus 7 ~~~~~~~~~~~~~~---~~~pCgH~I~~~~f~--~~rYngCPfC~~~~~ 50 (55)
T PF14447_consen 7 EQPCVFCGFVGTKG---TVLPCGHLICDNCFP--GERYNGCPFCGTPFE 50 (55)
T ss_pred ceeEEEcccccccc---ccccccceeeccccC--hhhccCCCCCCCccc
Confidence 45577776664444 678999999999965 358899999988764
No 78
>PHA03096 p28-like protein; Provisional
Probab=93.47 E-value=0.043 Score=54.25 Aligned_cols=35 Identities=43% Similarity=0.866 Sum_probs=27.6
Q ss_pred ccccccccccccC----Ccceec-cCCCcccHHHHHHHHh
Q 016946 330 KKCTICQEEYEAD----DEMGKL-DCGHSFHIQCIKQWLS 364 (380)
Q Consensus 330 ~~CsICleef~~~----e~v~~L-pCgH~FH~~CI~~WL~ 364 (380)
..|.||++..... ..-+.| .|.|.||..||..|-.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~ 218 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMT 218 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHH
Confidence 6799999975432 234566 5999999999999976
No 79
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.24 E-value=0.051 Score=53.84 Aligned_cols=44 Identities=32% Similarity=0.660 Sum_probs=34.5
Q ss_pred cccccccccccccCCcceeccCCCcccHHHHHHHHh-cCCCCccccc
Q 016946 329 DKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLS-QKNACPVCKA 374 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~-~k~sCPvCR~ 374 (380)
...|+.|-..+... +.+--|+|.||..||..-|. .-+.||.|-.
T Consensus 274 ~LkCplc~~Llrnp--~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 274 SLKCPLCHCLLRNP--MKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred cccCcchhhhhhCc--ccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 37899998887765 33335999999999987655 7789999944
No 80
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=93.18 E-value=0.044 Score=53.91 Aligned_cols=46 Identities=30% Similarity=0.811 Sum_probs=37.9
Q ss_pred cccccccccccccCC-cceeccCCCcccHHHHHHHHhcCCCCccccc
Q 016946 329 DKKCTICQEEYEADD-EMGKLDCGHSFHIQCIKQWLSQKNACPVCKA 374 (380)
Q Consensus 329 d~~CsICleef~~~e-~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~ 374 (380)
...|+||.+.+.... .+..++|||..|..|+.......-.||+|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 345999999876654 4566799999999999988777799999988
No 81
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=92.87 E-value=0.042 Score=40.24 Aligned_cols=34 Identities=26% Similarity=0.832 Sum_probs=24.6
Q ss_pred eeccCC-CcccHHHHHHHHhcCCCCcccccccccC
Q 016946 346 GKLDCG-HSFHIQCIKQWLSQKNACPVCKAAVVNR 379 (380)
Q Consensus 346 ~~LpCg-H~FH~~CI~~WL~~k~sCPvCR~~i~~~ 379 (380)
..+.|. |..|..|+.-.|.....||+|..+++.+
T Consensus 14 ~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 14 GLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTK 48 (50)
T ss_dssp SEEE-SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred CeeeecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence 456786 9999999999999999999999998865
No 82
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=92.05 E-value=0.11 Score=45.86 Aligned_cols=46 Identities=30% Similarity=0.615 Sum_probs=37.1
Q ss_pred CcccccccccccccCCcceec-c---CCCcccHHHHHHHHh---cCCCCccccccc
Q 016946 328 VDKKCTICQEEYEADDEMGKL-D---CGHSFHIQCIKQWLS---QKNACPVCKAAV 376 (380)
Q Consensus 328 ~d~~CsICleef~~~e~v~~L-p---CgH~FH~~CI~~WL~---~k~sCPvCR~~i 376 (380)
.-.+|-||.|...+. ..| | ||-..|..|.-..+. ....||+|++..
T Consensus 79 ~lYeCnIC~etS~ee---~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSF 131 (140)
T PF05290_consen 79 KLYECNICKETSAEE---RFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSF 131 (140)
T ss_pred CceeccCcccccchh---hcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccc
Confidence 357899999987765 555 3 999999999887666 566899999875
No 83
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=91.85 E-value=0.052 Score=62.39 Aligned_cols=42 Identities=33% Similarity=0.836 Sum_probs=37.8
Q ss_pred ccccccccccc-cCCcceeccCCCcccHHHHHHHHhcCCCCccccc
Q 016946 330 KKCTICQEEYE-ADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKA 374 (380)
Q Consensus 330 ~~CsICleef~-~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~ 374 (380)
..|.||++.+. .+ .+..|||.||..|+..|+..+..||+|+.
T Consensus 1154 ~~c~ic~dil~~~~---~I~~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1154 FVCEICLDILRNQG---GIAGCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred cchHHHHHHHHhcC---CeeeechhHhhhHHHHHHHHhccCcchhh
Confidence 47999999987 44 67789999999999999999999999974
No 84
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=91.70 E-value=0.093 Score=37.46 Aligned_cols=41 Identities=27% Similarity=0.796 Sum_probs=22.5
Q ss_pred ccccccccccCCcceeccCCCcccHHHHHHHHhcCC--CCccc
Q 016946 332 CTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKN--ACPVC 372 (380)
Q Consensus 332 CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~--sCPvC 372 (380)
|.+|-+-...|..-....|+=.+|..|+..++.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 667777766662211224888999999999999555 79988
No 85
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=91.69 E-value=0.12 Score=51.98 Aligned_cols=50 Identities=20% Similarity=0.450 Sum_probs=37.3
Q ss_pred CcccccccccccccCCcceec-cCCCcccHHHHHHHHh-cCCCCcccccccc
Q 016946 328 VDKKCTICQEEYEADDEMGKL-DCGHSFHIQCIKQWLS-QKNACPVCKAAVV 377 (380)
Q Consensus 328 ~d~~CsICleef~~~e~v~~L-pCgH~FH~~CI~~WL~-~k~sCPvCR~~i~ 377 (380)
+++.|+.|+|++...|.-..- +||...|..|+...-+ -...||-||....
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~ 64 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYD 64 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcc
Confidence 456699999998877664333 8999888888766544 4668999987543
No 86
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=91.60 E-value=0.077 Score=58.23 Aligned_cols=44 Identities=32% Similarity=0.828 Sum_probs=35.5
Q ss_pred ccccccccccccCCcceeccCCCcccHHHHHHHHhcC--CCCcccccccc
Q 016946 330 KKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQK--NACPVCKAAVV 377 (380)
Q Consensus 330 ~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k--~sCPvCR~~i~ 377 (380)
..|.||++ .+.....+|+|.||..|+..-+... ..||+|+..+.
T Consensus 455 ~~c~ic~~----~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc----cccceeecccchHHHHHHHhccccccCCCCcHHHHHHH
Confidence 78999999 2445788999999999999988732 26999987653
No 87
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=91.40 E-value=0.18 Score=50.65 Aligned_cols=47 Identities=21% Similarity=0.443 Sum_probs=38.2
Q ss_pred CCcccccccccccccCCcceec-cCCCcccHHHHHHHHhcCCCCccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKL-DCGHSFHIQCIKQWLSQKNACPVCKAAV 376 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~L-pCgH~FH~~CI~~WL~~k~sCPvCR~~i 376 (380)
.+...|+||+..-..+ ..| --|-+||..||...+..++.|||=..++
T Consensus 298 ~~~~~CpvClk~r~Np---tvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNP---TVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred CccccChhHHhccCCC---ceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 3467899999986665 344 5699999999999999999999966554
No 88
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=90.11 E-value=0.12 Score=49.79 Aligned_cols=46 Identities=26% Similarity=0.704 Sum_probs=35.2
Q ss_pred cccccccccc-cccCCcceec-c-CCCcccHHHHHHHHhc-CCCCc--cccc
Q 016946 329 DKKCTICQEE-YEADDEMGKL-D-CGHSFHIQCIKQWLSQ-KNACP--VCKA 374 (380)
Q Consensus 329 d~~CsIClee-f~~~e~v~~L-p-CgH~FH~~CI~~WL~~-k~sCP--vCR~ 374 (380)
+..|+||..+ |-.++....+ | |-|.+|..|++.-|.. ...|| -|.+
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 6789999886 5555554444 6 9999999999999985 45799 6643
No 89
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=89.50 E-value=0.2 Score=49.87 Aligned_cols=44 Identities=25% Similarity=0.608 Sum_probs=36.0
Q ss_pred CcccccccccccccCCcceeccC--CCcccHHHHHHHHhcCCCCccccccccc
Q 016946 328 VDKKCTICQEEYEADDEMGKLDC--GHSFHIQCIKQWLSQKNACPVCKAAVVN 378 (380)
Q Consensus 328 ~d~~CsICleef~~~e~v~~LpC--gH~FH~~CI~~WL~~k~sCPvCR~~i~~ 378 (380)
+-.+|+||.+.+..+ ++.| ||.-|..|-. +..+.||.|+.+|.+
T Consensus 47 ~lleCPvC~~~l~~P----i~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPP----IFQCDNGHLACSSCRT---KVSNKCPTCRLPIGN 92 (299)
T ss_pred hhccCchhhccCccc----ceecCCCcEehhhhhh---hhcccCCcccccccc
Confidence 357899999999887 6777 7999999865 457889999998864
No 90
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=89.44 E-value=0.16 Score=50.62 Aligned_cols=44 Identities=23% Similarity=0.600 Sum_probs=29.4
Q ss_pred cccccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCccccccc
Q 016946 329 DKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAV 376 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i 376 (380)
.-.|.-|=-.+..= -+.+||.|+||++|... ..-+.||.|-..|
T Consensus 90 VHfCd~Cd~PI~IY--GRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIY--GRMIPCKHVFCLECARS--DSDKICPLCDDRV 133 (389)
T ss_pred eEeecccCCcceee--ecccccchhhhhhhhhc--CccccCcCcccHH
Confidence 34576665444332 13449999999999643 5577999996544
No 91
>PLN02705 beta-amylase
Probab=89.12 E-value=0.16 Score=54.83 Aligned_cols=19 Identities=37% Similarity=0.406 Sum_probs=13.7
Q ss_pred ccccccCCCcccchhcccc
Q 016946 45 KLNNTFRGFGCTAAASQQV 63 (380)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~ 63 (380)
++.-+.|||..||++|..+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~ 54 (681)
T PLN02705 36 PQSRRPRGFAATAAAAAIA 54 (681)
T ss_pred CccCCCcchhhhhcccccC
Confidence 4566789999988775543
No 92
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.39 E-value=0.22 Score=55.49 Aligned_cols=36 Identities=22% Similarity=0.591 Sum_probs=29.3
Q ss_pred CCcccccccccccccCCcceeccCCCcccHHHHHHHH
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWL 363 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL 363 (380)
+..+.|.||.-.+-.. +....||||.||.+||.+-.
T Consensus 815 ep~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred cCccchHHhcchhhcC-cceeeeccchHHHHHHHHHH
Confidence 5578999999987654 55667999999999998764
No 93
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.66 E-value=0.24 Score=48.19 Aligned_cols=50 Identities=24% Similarity=0.658 Sum_probs=35.5
Q ss_pred CCcccccccccccccCCcc-eeccCC-----CcccHHHHHHHHhcCC--------CCccccccc
Q 016946 327 HVDKKCTICQEEYEADDEM-GKLDCG-----HSFHIQCIKQWLSQKN--------ACPVCKAAV 376 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v-~~LpCg-----H~FH~~CI~~WL~~k~--------sCPvCR~~i 376 (380)
+.+..|=||+..=++.-.. -.-||. |..|..||..|+..+. +||-|+++.
T Consensus 18 e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY 81 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY 81 (293)
T ss_pred ccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence 5577899999875543111 011663 8999999999998444 699999864
No 94
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.50 E-value=0.41 Score=49.12 Aligned_cols=47 Identities=21% Similarity=0.433 Sum_probs=39.1
Q ss_pred cccccccccccccCCcceeccCCCcccHHHHHHHHh---cCCCCcccccc
Q 016946 329 DKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLS---QKNACPVCKAA 375 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~---~k~sCPvCR~~ 375 (380)
...|||=-+.-.+.++-..|.|||+...+-|.+.-. .+..||.|-.+
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 457999888877778889999999999999999876 33689999554
No 95
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.51 E-value=0.41 Score=49.28 Aligned_cols=39 Identities=36% Similarity=0.708 Sum_probs=29.2
Q ss_pred CcccccccccccccC-CcceeccCCCcccHHHHHHHHhcC
Q 016946 328 VDKKCTICQEEYEAD-DEMGKLDCGHSFHIQCIKQWLSQK 366 (380)
Q Consensus 328 ~d~~CsICleef~~~-e~v~~LpCgH~FH~~CI~~WL~~k 366 (380)
....|.||..++... +....+.|+|.||.+|+++.++.+
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~ 184 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVK 184 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhh
Confidence 357899999554444 344456899999999999988833
No 96
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=84.23 E-value=0.61 Score=51.44 Aligned_cols=42 Identities=26% Similarity=0.604 Sum_probs=30.6
Q ss_pred ccccccccccccC---------CcceeccCCCcccHHHHHHHHhcCCCCcc
Q 016946 330 KKCTICQEEYEAD---------DEMGKLDCGHSFHIQCIKQWLSQKNACPV 371 (380)
Q Consensus 330 ~~CsICleef~~~---------e~v~~LpCgH~FH~~CI~~WL~~k~sCPv 371 (380)
..|+||.+.+-.. --..++.|+|+.|.+|...|++....||.
T Consensus 1019 ~~~~~~~~~~~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1019 TQCAICKGFTFQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred eeccccccceeeeeeEeeEeeccchhhccccccccHHHHHHHHhcCCcCCC
Confidence 3466666554332 22345579999999999999999999985
No 97
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.76 E-value=0.56 Score=44.38 Aligned_cols=40 Identities=25% Similarity=0.657 Sum_probs=28.7
Q ss_pred ccccccccccCCcceeccCCC-cccHHHHHHHHhcCCCCccccccccc
Q 016946 332 CTICQEEYEADDEMGKLDCGH-SFHIQCIKQWLSQKNACPVCKAAVVN 378 (380)
Q Consensus 332 CsICleef~~~e~v~~LpCgH-~FH~~CI~~WL~~k~sCPvCR~~i~~ 378 (380)
|-+|-+. .-.|..|||.| .+|..|-.. ...||+|+.....
T Consensus 161 Cr~C~~~---~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLPCRHLCLCGICDES----LRICPICRSPKTS 201 (207)
T ss_pred ceecCcC---CceEEeecccceEeccccccc----CccCCCCcChhhc
Confidence 8888776 22356779998 788888532 5569999987643
No 98
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=83.34 E-value=0.32 Score=53.14 Aligned_cols=45 Identities=29% Similarity=0.722 Sum_probs=38.5
Q ss_pred cccccccccccccCCcceeccCCCcccHHHHHHHHhcCC---CCccccccc
Q 016946 329 DKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKN---ACPVCKAAV 376 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~---sCPvCR~~i 376 (380)
..+|+||...|..+ ..+.|.|.|+..|+..-|...+ .||+|+..+
T Consensus 21 ~lEc~ic~~~~~~p---~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~ 68 (684)
T KOG4362|consen 21 ILECPICLEHVKEP---SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDI 68 (684)
T ss_pred hccCCceeEEeecc---chhhhhHHHHhhhhhceeeccCccccchhhhhhh
Confidence 57899999998887 7889999999999998887544 799998654
No 99
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=83.16 E-value=1.2 Score=33.66 Aligned_cols=43 Identities=23% Similarity=0.765 Sum_probs=31.5
Q ss_pred cccccccccccccCCcceec-cCCCcccHHHHHHHHhcCCCCcc--cccc
Q 016946 329 DKKCTICQEEYEADDEMGKL-DCGHSFHIQCIKQWLSQKNACPV--CKAA 375 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~L-pCgH~FH~~CI~~WL~~k~sCPv--CR~~ 375 (380)
...|.+|-+.|..++.++.- .||-.||..|... ...|-+ |.+.
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~~~c~~~ 50 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCINYSCGTG 50 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEeccCCCC
Confidence 56899999999866555444 6999999999744 555655 5443
No 100
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=80.50 E-value=0.84 Score=33.52 Aligned_cols=43 Identities=19% Similarity=0.547 Sum_probs=21.9
Q ss_pred ccccccccccccCCcceeccCCCcccHHHHHHHHhc-----CCCCcccccc
Q 016946 330 KKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQ-----KNACPVCKAA 375 (380)
Q Consensus 330 ~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~-----k~sCPvCR~~ 375 (380)
..|+|....+..+ ++-..|.|.-+++ +..||.. .-.||+|.++
T Consensus 3 L~CPls~~~i~~P--~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIP--VRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSE--EEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeC--ccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 4688888887665 4555899986655 6677762 2269999864
No 101
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=80.26 E-value=0.86 Score=44.30 Aligned_cols=48 Identities=29% Similarity=0.713 Sum_probs=35.8
Q ss_pred cccccccccccccCCc-ceeccCC-----CcccHHHHHHHHh--cCCCCccccccc
Q 016946 329 DKKCTICQEEYEADDE-MGKLDCG-----HSFHIQCIKQWLS--QKNACPVCKAAV 376 (380)
Q Consensus 329 d~~CsICleef~~~e~-v~~LpCg-----H~FH~~CI~~WL~--~k~sCPvCR~~i 376 (380)
+..|-||.++...... ....||. +..|..|+..|+. ....|.+|....
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~ 133 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFF 133 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccc
Confidence 4789999998655432 2344664 5779999999999 666899998754
No 102
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=80.01 E-value=1.2 Score=49.59 Aligned_cols=49 Identities=24% Similarity=0.679 Sum_probs=37.2
Q ss_pred CCcccccccccccccCCcceeccCC-----CcccHHHHHHHHh--cCCCCccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCG-----HSFHIQCIKQWLS--QKNACPVCKAAV 376 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCg-----H~FH~~CI~~WL~--~k~sCPvCR~~i 376 (380)
+++..|-||..+-..++++. -||. -..|..|+-+|+. .+..|-+|+.++
T Consensus 10 ~d~~~CRICr~e~~~d~pLf-hPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~ 65 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLF-HPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEY 65 (1175)
T ss_pred ccchhceeecCCCCCCCcCc-ccccccchhHHHHHHHHHHHHhcCCCcceeeeccee
Confidence 45688999998877766653 3554 2579999999999 455799998765
No 103
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=79.69 E-value=1 Score=49.94 Aligned_cols=49 Identities=20% Similarity=0.310 Sum_probs=34.8
Q ss_pred cccccccccccccC-Ccceecc---CCCcccHHHHHHHHhc------CCCCcccccccc
Q 016946 329 DKKCTICQEEYEAD-DEMGKLD---CGHSFHIQCIKQWLSQ------KNACPVCKAAVV 377 (380)
Q Consensus 329 d~~CsICleef~~~-e~v~~Lp---CgH~FH~~CI~~WL~~------k~sCPvCR~~i~ 377 (380)
...|.||.-++..+ |-...+| |+|.||..||..|+.+ +-.|++|...|.
T Consensus 96 s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 96 SDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred ccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 45677777777662 2334455 9999999999999872 336899977553
No 104
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=79.36 E-value=1.5 Score=44.94 Aligned_cols=28 Identities=29% Similarity=0.983 Sum_probs=21.2
Q ss_pred CCCcccHHHHHHHHh-------------cCCCCcccccccc
Q 016946 350 CGHSFHIQCIKQWLS-------------QKNACPVCKAAVV 377 (380)
Q Consensus 350 CgH~FH~~CI~~WL~-------------~k~sCPvCR~~i~ 377 (380)
|.-..|.+|+-+|+. .+-.||+||+...
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 445679999999986 2337999998753
No 105
>PF02166 Androgen_recep: Androgen receptor; InterPro: IPR001103 Steroid or nuclear hormone receptors (NRs) constitute an important super-family of transcription regulators that are involved in diverse physiological functions, including control of embryonic development, cell differentiation and homeostasis. Members include the steroid hormone receptors and receptors for thyroid hormone, retinoids and 1,25-dihydroxy-vitamin D3. The proteins function as dimeric molecules in the nucleus to regulate the transcription of target genes in a ligand-responsive manner [, ]. NRs are extremely important in medical research, a large number of them being implicated in diseases such as cancer, diabetes and hormone resistance syndromes. Many do not yet have a defined ligand and are accordingly termed "orphan" receptors. More than 300 NRs have been described to date and a new system has recently been introduced in an attempt to rationalise the increasingly complex set of names used to describe superfamily members. The androgen receptor (AR) consists of 3 functional and structural domains: an N-terminal (modulatory) domain; a DNA binding domain (IPR001628 from INTERPRO) that mediates specific binding to target DNA sequences (ligand-responsive elements); and a hormone binding domain. The N-terminal domain (NTD) is unique to the androgen receptors and spans approximately the first 530 residues; the highly-conserved DNA-binding domain is smaller (around 65 residues) and occupies the central portion of the protein; and the hormone ligand binding domain (LBD) lies at the receptor C terminus. In the absence of ligand, steroid hormone receptors are thought to be weakly associated with nuclear components; hormone binding greatly increases receptor affinity. The LBDs of steroid hormone receptors fold into 12 helices that form a ligand-binding pocket. When an agonist is bound, helix 12 folds over the pocket to enclose the ligand []. When an antagonist is unbound, helix 12 is positioned away from the pocket in a way that interferes with the binding of coactivators to a groove in the hormone-binding domain formed after ligand binding. In AR, ligand binding that induces folding of helix 12 to overlie the pocket discloses a groove that binds a region of the NTD. Coactivator molecules can also bind to this groove, but the predominant site for coactivator binding to AR is in the NTD. AR ligand resides in a pocket and primarily contacts helices 4, 5, and 10. The DNA-binding region includes eight cysteine residues that form two coordination complexes, each composed of four cysteines and a Zn2+ ion. These two zinc fingers form the structure that binds to the major groove of DNA. The second zinc finger stabilises the binding complex by hydrophobic interactions with the first finger and contributes to specificity of receptor DNA binding. It is also necessary for receptor dimerisation that occurs during DNA binding Defects in the androgen receptor cause testicular feminisation syndrome, androgen insensibility syndrome (AIS) [, ]. AIS may be complete (CAIS), where external genitalia are phenotypically female; partial (PAIS), where genitalia are substantively ambiguous; or mild (MAIS), where external genitalia are normal male, or nearly so. Defects in the receptor also cause X-linked spinal and bulbar muscular atrophy (also known as Kennedy's disease).; GO: 0003677 DNA binding, 0004882 androgen receptor activity, 0005496 steroid binding, 0006355 regulation of transcription, DNA-dependent, 0030521 androgen receptor signaling pathway, 0005634 nucleus; PDB: 1XOW_B 2Q7K_B 2Q7I_B.
Probab=77.40 E-value=0.74 Score=46.49 Aligned_cols=7 Identities=57% Similarity=0.601 Sum_probs=0.5
Q ss_pred hHHHHHh
Q 016946 11 SVAEQIK 17 (380)
Q Consensus 11 ~~~~~~~ 17 (380)
||-|-|.
T Consensus 24 SVREVIQ 30 (423)
T PF02166_consen 24 SVREVIQ 30 (423)
T ss_dssp H------
T ss_pred HHHHHhC
Confidence 4555554
No 106
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=75.79 E-value=2.1 Score=46.39 Aligned_cols=43 Identities=26% Similarity=0.704 Sum_probs=28.3
Q ss_pred CCcccccccccc-----cccCCcceeccCCCcccHHHHHHHHhcCCCCccc
Q 016946 327 HVDKKCTICQEE-----YEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVC 372 (380)
Q Consensus 327 ~~d~~CsIClee-----f~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvC 372 (380)
.....|.||... |+.........|+++||..|+.. .+.-||.|
T Consensus 509 ~~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r---~s~~CPrC 556 (580)
T KOG1829|consen 509 GKGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR---KSPCCPRC 556 (580)
T ss_pred cCeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc---cCCCCCch
Confidence 345778899542 33233344557999999999644 33349999
No 107
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=74.58 E-value=3.2 Score=38.90 Aligned_cols=83 Identities=20% Similarity=0.480 Sum_probs=45.3
Q ss_pred CCCCCCCHHHHHHhhhhccccCCCCCHHHHHHHhhhccchhhccccCCCCCCCcccccccccc-----cccCCcceeccC
Q 016946 276 LDVDNMSYEELLELGDRIGYVSTGLKEDEIGRCLRKLKNSIINDLSSHLPLHVDKKCTICQEE-----YEADDEMGKLDC 350 (380)
Q Consensus 276 lDvd~msYEeLLeL~e~ig~v~~GLse~~I~~~l~klk~~~~~~~~~~~~~~~d~~CsIClee-----f~~~e~v~~LpC 350 (380)
-+++-.|..+|.++.. |.-...+..++......... -.+=......|-||-++ |.....+..-.|
T Consensus 109 ~~~~~YSl~DL~~v~~-------G~L~~~L~~l~~~~~~HV~~---C~lC~~kGfiCe~C~~~~~IfPF~~~~~~~C~~C 178 (202)
T PF13901_consen 109 EDPHLYSLADLVQVKS-------GQLLPQLEKLVQFAEKHVYS---CELCQQKGFICEICNSDDIIFPFQIDTTVRCPKC 178 (202)
T ss_pred hCCceEcHHHHHHHhh-------chHHHHHHHHHHHHHHHHHH---hHHHHhCCCCCccCCCCCCCCCCCCCCeeeCCcC
Confidence 4666778888877643 22223333333322221111 00001235678888753 333223334479
Q ss_pred CCcccHHHHHHHHhcCCCCcccc
Q 016946 351 GHSFHIQCIKQWLSQKNACPVCK 373 (380)
Q Consensus 351 gH~FH~~CI~~WL~~k~sCPvCR 373 (380)
+-+||..|.. +..||-|.
T Consensus 179 ~~v~H~~C~~-----~~~CpkC~ 196 (202)
T PF13901_consen 179 KSVFHKSCFR-----KKSCPKCA 196 (202)
T ss_pred ccccchhhcC-----CCCCCCcH
Confidence 9999999975 37799994
No 108
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=71.65 E-value=2.9 Score=42.16 Aligned_cols=50 Identities=24% Similarity=0.546 Sum_probs=38.6
Q ss_pred cccccccccccccCCcc-eeccCCCcccHHHHHHHHhcCCCCccccccccc
Q 016946 329 DKKCTICQEEYEADDEM-GKLDCGHSFHIQCIKQWLSQKNACPVCKAAVVN 378 (380)
Q Consensus 329 d~~CsICleef~~~e~v-~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~~ 378 (380)
-..|+||.+.....+.. .-.+|+|..|+.|+..-......||.||++...
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCcccc
Confidence 36799999987443332 223799999999999988899999999987653
No 109
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.90 E-value=2.7 Score=43.97 Aligned_cols=36 Identities=39% Similarity=0.836 Sum_probs=30.7
Q ss_pred CCcccccccccccccCCcceeccCCCcccHHHHHHHHh
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLS 364 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~ 364 (380)
.....|-||.+.+.. .+..+.|||.|+..|+...|.
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~ 103 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLG 103 (444)
T ss_pred CccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhh
Confidence 346789999999876 567889999999999998887
No 110
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.56 E-value=2.1 Score=47.58 Aligned_cols=45 Identities=24% Similarity=0.612 Sum_probs=33.4
Q ss_pred CCccccccccccccc-C---CcceeccCCCcccHHHHHHHHhcCCCCccc
Q 016946 327 HVDKKCTICQEEYEA-D---DEMGKLDCGHSFHIQCIKQWLSQKNACPVC 372 (380)
Q Consensus 327 ~~d~~CsICleef~~-~---e~v~~LpCgH~FH~~CI~~WL~~k~sCPvC 372 (380)
..+..|.-|.+.... + +.++.+.|||.||..|+---+.+.+ |-+|
T Consensus 782 ~~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 782 SVEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred eehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChh
Confidence 445689999987542 2 4678889999999999876665554 6555
No 111
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.77 E-value=3.1 Score=41.46 Aligned_cols=28 Identities=21% Similarity=0.640 Sum_probs=22.1
Q ss_pred CCCcccHHHHHHHHh-------------cCCCCcccccccc
Q 016946 350 CGHSFHIQCIKQWLS-------------QKNACPVCKAAVV 377 (380)
Q Consensus 350 CgH~FH~~CI~~WL~-------------~k~sCPvCR~~i~ 377 (380)
|....|..|+-+|+. .+-+||+||+...
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 566788999999875 4558999998764
No 113
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=66.59 E-value=2.6 Score=47.09 Aligned_cols=10 Identities=30% Similarity=0.584 Sum_probs=5.1
Q ss_pred ccCCCCCCCc
Q 016946 238 YRHVRHPSPD 247 (380)
Q Consensus 238 ~rh~r~ps~~ 247 (380)
|..+..|+.-
T Consensus 390 ytkly~Psd~ 399 (1194)
T KOG4246|consen 390 YTKLYTPSDK 399 (1194)
T ss_pred hccccCCcch
Confidence 4445555543
No 114
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=62.80 E-value=3.9 Score=40.65 Aligned_cols=37 Identities=27% Similarity=0.650 Sum_probs=29.3
Q ss_pred CcccccccccccccCCcceeccC----CCcccHHHHHHHHhcCC
Q 016946 328 VDKKCTICQEEYEADDEMGKLDC----GHSFHIQCIKQWLSQKN 367 (380)
Q Consensus 328 ~d~~CsICleef~~~e~v~~LpC----gH~FH~~CI~~WL~~k~ 367 (380)
.-..|.+|.|.+++. ....| .|.||+.|-++-+++..
T Consensus 267 apLcCTLC~ERLEDT---HFVQCPSVp~HKFCFPCSResIK~Qg 307 (352)
T KOG3579|consen 267 APLCCTLCHERLEDT---HFVQCPSVPSHKFCFPCSRESIKQQG 307 (352)
T ss_pred CceeehhhhhhhccC---ceeecCCCcccceecccCHHHHHhhc
Confidence 347899999999887 34455 69999999999888544
No 115
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=62.53 E-value=3.5 Score=44.18 Aligned_cols=44 Identities=27% Similarity=0.815 Sum_probs=36.3
Q ss_pred CCcccccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCcccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVV 377 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~ 377 (380)
+....|.||+.+. ..+..+|. |..|+..|+..+..||+|...+.
T Consensus 477 ~~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~ 520 (543)
T KOG0802|consen 477 EPNDVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYMK 520 (543)
T ss_pred cccCcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhhh
Confidence 3467899999997 23566788 89999999999999999987653
No 116
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=61.65 E-value=5.8 Score=44.09 Aligned_cols=40 Identities=28% Similarity=0.586 Sum_probs=27.8
Q ss_pred cccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCcc
Q 016946 331 KCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPV 371 (380)
Q Consensus 331 ~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPv 371 (380)
.|.+|-..+. |..+-.-.|||.-|..|+++|+....-||.
T Consensus 781 ~CtVC~~vi~-G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 781 KCTVCDLVIR-GVDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred Cceeecceee-eeEeecccccccccHHHHHHHHhcCCCCcc
Confidence 5666644422 222222359999999999999998888776
No 117
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=59.44 E-value=5.2 Score=47.32 Aligned_cols=15 Identities=27% Similarity=0.244 Sum_probs=7.5
Q ss_pred cchhccccccccccc
Q 016946 56 TAAASQQVSLPAVIR 70 (380)
Q Consensus 56 ~~~~~~~~~~~~~~~ 70 (380)
.+-.|.++..|-+-|
T Consensus 2165 ~~~qa~qq~qplf~R 2179 (2220)
T KOG3598|consen 2165 EAYQAEQQRQPLFRR 2179 (2220)
T ss_pred cccccccccchhhHH
Confidence 334455555654443
No 118
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=58.91 E-value=3.9 Score=45.84 Aligned_cols=6 Identities=33% Similarity=1.448 Sum_probs=3.1
Q ss_pred hhHHHH
Q 016946 75 WDAKKV 80 (380)
Q Consensus 75 ~~~~~~ 80 (380)
|++.+-
T Consensus 199 wnaqri 204 (1194)
T KOG4246|consen 199 WNAQRI 204 (1194)
T ss_pred ccHHHH
Confidence 665443
No 119
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=57.78 E-value=7 Score=39.43 Aligned_cols=45 Identities=20% Similarity=0.415 Sum_probs=35.8
Q ss_pred cccccccccccccCCcceeccCCCcccHHHHHHHHh---cCCCCcccc
Q 016946 329 DKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLS---QKNACPVCK 373 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~---~k~sCPvCR 373 (380)
-..|++=-+.-.+.++...|.|||+.-..-+...-+ ..+.||.|-
T Consensus 336 ~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 336 LFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred eeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 457998777777777788999999999998887644 355799994
No 120
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=57.38 E-value=6 Score=38.96 Aligned_cols=47 Identities=26% Similarity=0.610 Sum_probs=34.6
Q ss_pred ccccccccccccCCcceec----cCCCcccHHHHHHHHh---------cCCCCccccccc
Q 016946 330 KKCTICQEEYEADDEMGKL----DCGHSFHIQCIKQWLS---------QKNACPVCKAAV 376 (380)
Q Consensus 330 ~~CsICleef~~~e~v~~L----pCgH~FH~~CI~~WL~---------~k~sCPvCR~~i 376 (380)
..|-||.+++...+..+.+ .|.-++|..|+..-+. ....||.|++.+
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 6899999999555554433 3888999999998433 234799998744
No 121
>PLN02705 beta-amylase
Probab=55.98 E-value=6.8 Score=42.72 Aligned_cols=12 Identities=17% Similarity=0.385 Sum_probs=5.8
Q ss_pred HHHHHHhhhccc
Q 016946 303 DEIGRCLRKLKN 314 (380)
Q Consensus 303 ~~I~~~l~klk~ 314 (380)
+.|...++.+|.
T Consensus 268 ~al~a~L~aLK~ 279 (681)
T PLN02705 268 EGVRQELSHMKS 279 (681)
T ss_pred HHHHHHHHHHHH
Confidence 445555555443
No 122
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.68 E-value=7.8 Score=37.90 Aligned_cols=34 Identities=12% Similarity=0.125 Sum_probs=30.2
Q ss_pred CcccccccccccccCCcceeccCCCcccHHHHHHHHh
Q 016946 328 VDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLS 364 (380)
Q Consensus 328 ~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~ 364 (380)
.-+.|+.||..+.++ ++.+=||+|+..||.+.+.
T Consensus 42 ~FdcCsLtLqPc~dP---vit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 42 PFDCCSLTLQPCRDP---VITPDGYLFDREAILEYIL 75 (303)
T ss_pred CcceeeeecccccCC---ccCCCCeeeeHHHHHHHHH
Confidence 357899999999988 7889999999999999865
No 123
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=55.40 E-value=4.5 Score=28.87 Aligned_cols=43 Identities=21% Similarity=0.567 Sum_probs=30.0
Q ss_pred cccccccccccCCcceeccCCCcccHHHHHHHHh------cCCCCcccc
Q 016946 331 KCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLS------QKNACPVCK 373 (380)
Q Consensus 331 ~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~------~k~sCPvCR 373 (380)
.|.||......++.+.--.|+-.||..|+..-+. ..-.||.|+
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 3889998545554444447999999999876543 234788885
No 124
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=55.34 E-value=6.2 Score=37.69 Aligned_cols=43 Identities=26% Similarity=0.687 Sum_probs=35.2
Q ss_pred cccccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCcccc
Q 016946 329 DKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCK 373 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR 373 (380)
-..|.+|-+-...+ ++.-.|+-.||..|+...|.+...||.|.
T Consensus 181 lk~Cn~Ch~LvIqg--~rCg~c~i~~h~~c~qty~q~~~~cphc~ 223 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQG--IRCGSCNIQYHRGCIQTYLQRRDICPHCG 223 (235)
T ss_pred HHHHhHhHHHhhee--eccCcccchhhhHHHHHHhcccCcCCchh
Confidence 35799998876655 23347888999999999999999999994
No 125
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.04 E-value=5.2 Score=43.75 Aligned_cols=42 Identities=29% Similarity=0.646 Sum_probs=30.2
Q ss_pred cccccccccccccCC-cceeccCCCcccHHHHHHHHhcCCCCcccc
Q 016946 329 DKKCTICQEEYEADD-EMGKLDCGHSFHIQCIKQWLSQKNACPVCK 373 (380)
Q Consensus 329 d~~CsICleef~~~e-~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR 373 (380)
-..|.||+..|.... .-+.|.|||+.|..|+..... .+|| |+
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn--~scp-~~ 53 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN--ASCP-TK 53 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh--ccCC-CC
Confidence 467999999886642 124567999999999977544 4566 44
No 126
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.35 E-value=7.6 Score=40.07 Aligned_cols=42 Identities=29% Similarity=0.708 Sum_probs=29.5
Q ss_pred cccccccccccc---CCcceeccCCCcccHHHHHHHHhcCCCCccc
Q 016946 330 KKCTICQEEYEA---DDEMGKLDCGHSFHIQCIKQWLSQKNACPVC 372 (380)
Q Consensus 330 ~~CsICleef~~---~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvC 372 (380)
..|++|.-.++- ...+... |||.||+.|...|......|.-|
T Consensus 307 r~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 307 RQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred CcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 467777655433 3334444 99999999999998877766554
No 127
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.62 E-value=13 Score=36.47 Aligned_cols=47 Identities=26% Similarity=0.454 Sum_probs=34.5
Q ss_pred cccccccccccccCCcceec-cCCCcccHHHHHHHHhcCCCCcccccccc
Q 016946 329 DKKCTICQEEYEADDEMGKL-DCGHSFHIQCIKQWLSQKNACPVCKAAVV 377 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~L-pCgH~FH~~CI~~WL~~k~sCPvCR~~i~ 377 (380)
...|+|---+|........| +|||+|-..-+++. ...+|++|...+-
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~ 158 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQ 158 (293)
T ss_pred eeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCccc
Confidence 45788876666554444445 89999999988874 3778999988654
No 128
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=50.20 E-value=31 Score=37.05 Aligned_cols=14 Identities=21% Similarity=0.339 Sum_probs=7.6
Q ss_pred CcccCCCCCCCCCC
Q 016946 109 HINISSSSSSNNNN 122 (380)
Q Consensus 109 ~~~~~~~~~~~~~~ 122 (380)
-++-|++++++.+.
T Consensus 876 etqmpssatstsat 889 (990)
T KOG1819|consen 876 ETQMPSSATSTSAT 889 (990)
T ss_pred cccCCccccccccc
Confidence 35566666554443
No 129
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=49.65 E-value=29 Score=26.48 Aligned_cols=47 Identities=26% Similarity=0.707 Sum_probs=33.6
Q ss_pred ccccccccccccCCcceeccCCC--cccHHHHHHHHhcCCCCcccccccccC
Q 016946 330 KKCTICQEEYEADDEMGKLDCGH--SFHIQCIKQWLSQKNACPVCKAAVVNR 379 (380)
Q Consensus 330 ~~CsICleef~~~e~v~~LpCgH--~FH~~CI~~WL~~k~sCPvCR~~i~~~ 379 (380)
..|-.|-.++..... ...-|.+ .||.+|....| .+.||-|.-.++.|
T Consensus 6 pnCE~C~~dLp~~s~-~A~ICSfECTFC~~C~e~~l--~~~CPNCgGelv~R 54 (57)
T PF06906_consen 6 PNCECCDKDLPPDSP-EAYICSFECTFCADCAETML--NGVCPNCGGELVRR 54 (57)
T ss_pred CCccccCCCCCCCCC-cceEEeEeCcccHHHHHHHh--cCcCcCCCCccccC
Confidence 457777777665431 1233553 79999999877 78999999988865
No 130
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=49.53 E-value=13 Score=24.15 Aligned_cols=38 Identities=21% Similarity=0.517 Sum_probs=24.5
Q ss_pred cccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCcccccccc
Q 016946 331 KCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVV 377 (380)
Q Consensus 331 ~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~ 377 (380)
.|..|-+.+...+. ....=+..||..|. .|..|...|.
T Consensus 1 ~C~~C~~~i~~~~~-~~~~~~~~~H~~Cf--------~C~~C~~~L~ 38 (39)
T smart00132 1 KCAGCGKPIRGGEL-VLRALGKVWHPECF--------KCSKCGKPLG 38 (39)
T ss_pred CccccCCcccCCcE-EEEeCCccccccCC--------CCcccCCcCc
Confidence 37778777665422 22234678888874 6888887764
No 131
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=48.79 E-value=14 Score=37.33 Aligned_cols=50 Identities=24% Similarity=0.640 Sum_probs=33.8
Q ss_pred Ccccccccccc--ccc---C----------Ccc-eeccCCCcccHHHHHHHHh---------cCCCCcccccccc
Q 016946 328 VDKKCTICQEE--YEA---D----------DEM-GKLDCGHSFHIQCIKQWLS---------QKNACPVCKAAVV 377 (380)
Q Consensus 328 ~d~~CsIClee--f~~---~----------e~v-~~LpCgH~FH~~CI~~WL~---------~k~sCPvCR~~i~ 377 (380)
.+.+|++|+.. |.. + -+. ...||||+--..-++-|-. -+..||.|-..+.
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLA 414 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhc
Confidence 36789999874 211 1 011 2238999999999999976 2447999977664
No 132
>PF03249 TSA: Type specific antigen; InterPro: IPR004933 There are several antigenic variants in Rickettsia tsutsugamushi, and a type-specific antigen (TSA) of 56-kilodaltons located on the rickettsial surface is responsible for the variation [, ]. TSA proteins are probably integral membrane proteins. ; GO: 0016021 integral to membrane
Probab=43.47 E-value=4.8 Score=41.44 Aligned_cols=23 Identities=48% Similarity=0.450 Sum_probs=11.7
Q ss_pred CchhHHHHHhhCCCchhhHHHHHHH
Q 016946 8 SSNSVAEQIKERPRNEMSQQQQQQQ 32 (380)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~qqqqqqq 32 (380)
-.|..|.||.-.- .|-|+|||||
T Consensus 292 i~nafa~qiqlnf--~ipq~~qqqq 314 (503)
T PF03249_consen 292 IGNAFANQIQLNF--RIPQQQQQQQ 314 (503)
T ss_pred HHHHhhhhheeee--ecchHHHhhh
Confidence 3567777775432 3444443333
No 133
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=43.29 E-value=7.9 Score=40.12 Aligned_cols=29 Identities=28% Similarity=0.793 Sum_probs=0.0
Q ss_pred cceeccCCCcccHHHHHHHHh------cCCCCcccccc
Q 016946 344 EMGKLDCGHSFHIQCIKQWLS------QKNACPVCKAA 375 (380)
Q Consensus 344 ~v~~LpCgH~FH~~CI~~WL~------~k~sCPvCR~~ 375 (380)
+-+-|.|||++.. ..|-. ....||+|+..
T Consensus 303 P~VYl~CGHVhG~---h~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 303 PWVYLNCGHVHGY---HNWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp --------------------------------------
T ss_pred ceeeccccceeee---cccccccccccccccCCCcccc
Confidence 3467789998884 46754 24479999874
No 134
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=41.85 E-value=17 Score=36.96 Aligned_cols=46 Identities=22% Similarity=0.472 Sum_probs=32.7
Q ss_pred cccccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCccccc
Q 016946 329 DKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKA 374 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~ 374 (380)
...|=.|.++.........-.|.|+||.+|=.--=+.-..||-|..
T Consensus 330 ~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 330 SRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred CcceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcCC
Confidence 3458888777766655556689999999994433335557999963
No 135
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=41.81 E-value=15 Score=30.59 Aligned_cols=38 Identities=24% Similarity=0.725 Sum_probs=30.2
Q ss_pred cccccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCccccccccc
Q 016946 329 DKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVVN 378 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~~ 378 (380)
...|-||-...... ||.||..|.++ +..|.+|.+.|.+
T Consensus 44 ~~~C~~CK~~v~q~--------g~~YCq~CAYk----kGiCamCGKki~d 81 (90)
T PF10235_consen 44 SSKCKICKTKVHQP--------GAKYCQTCAYK----KGICAMCGKKILD 81 (90)
T ss_pred CccccccccccccC--------CCccChhhhcc----cCcccccCCeecc
Confidence 46799998765543 68899999765 8899999998865
No 136
>KOG1902 consensus Putative signal transduction protein involved in RNA splicing [Signal transduction mechanisms; RNA processing and modification]
Probab=41.75 E-value=12 Score=38.20 Aligned_cols=15 Identities=73% Similarity=1.281 Sum_probs=5.7
Q ss_pred hchhhhHHHhhhhhh
Q 016946 187 RDRDRDRERERERDR 201 (380)
Q Consensus 187 r~r~~~~~~~~~r~~ 201 (380)
++++|.+++|+|+++
T Consensus 412 ~~~~r~~~~e~e~e~ 426 (441)
T KOG1902|consen 412 RERDRGRDRERERER 426 (441)
T ss_pred hhhhcccchhhhhhh
Confidence 333333333333333
No 137
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]
Probab=41.12 E-value=16 Score=43.13 Aligned_cols=11 Identities=27% Similarity=0.301 Sum_probs=6.8
Q ss_pred ccccCCCcccc
Q 016946 47 NNTFRGFGCTA 57 (380)
Q Consensus 47 ~~~~~~~~~~~ 57 (380)
++..-+||+-+
T Consensus 343 ~~s~~~~~D~~ 353 (1973)
T KOG4407|consen 343 GSSSIDFGDMA 353 (1973)
T ss_pred CCCcccccchh
Confidence 45566777755
No 138
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=40.23 E-value=19 Score=30.82 Aligned_cols=46 Identities=20% Similarity=0.455 Sum_probs=28.1
Q ss_pred CcccccccccccccC--CcceeccCCCcccHHHHHHHHhcCC--CCccccc
Q 016946 328 VDKKCTICQEEYEAD--DEMGKLDCGHSFHIQCIKQWLSQKN--ACPVCKA 374 (380)
Q Consensus 328 ~d~~CsICleef~~~--e~v~~LpCgH~FH~~CI~~WL~~k~--sCPvCR~ 374 (380)
.+..|.+|...|..- -......|.|.+|..|-.. ..... .|-+|.+
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHH
Confidence 567999999986432 2344558999999999544 11111 4777754
No 139
>KOG4140 consensus Nuclear protein Ataxin-7 [Chromatin structure and dynamics]
Probab=40.11 E-value=52 Score=35.27 Aligned_cols=14 Identities=14% Similarity=0.173 Sum_probs=6.9
Q ss_pred hhhHHHHHHHHHHH
Q 016946 23 EMSQQQQQQQQEAA 36 (380)
Q Consensus 23 ~~~qqqqqqqq~q~ 36 (380)
.|+|=||||||||.
T Consensus 516 ~~~~i~~~q~~q~~ 529 (659)
T KOG4140|consen 516 AMDPVCSMQSRQVS 529 (659)
T ss_pred cccHHHHHHHHhhh
Confidence 35555555555443
No 140
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.47 E-value=9.9 Score=38.10 Aligned_cols=47 Identities=26% Similarity=0.629 Sum_probs=38.6
Q ss_pred CCcccccccccccccCCcceec-cCCCcccHHHHHHHHhcCCCCccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKL-DCGHSFHIQCIKQWLSQKNACPVCKAAV 376 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~L-pCgH~FH~~CI~~WL~~k~sCPvCR~~i 376 (380)
.....|-||+..+... .+. .|.|.|+..|...|....+.||.|+..+
T Consensus 103 ~~~~~~~~~~g~l~vp---t~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~ 150 (324)
T KOG0824|consen 103 QDHDICYICYGKLTVP---TRIQGCWHQFCYVCPKSNFAMGNDCPDCRGKI 150 (324)
T ss_pred CCccceeeeeeeEEec---ccccCceeeeeecCCchhhhhhhccchhhcCc
Confidence 4467899999988766 233 4999999999999999999999997644
No 141
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=39.47 E-value=13 Score=25.34 Aligned_cols=26 Identities=46% Similarity=0.922 Sum_probs=17.1
Q ss_pred ccccccccccccCCc--------ceeccCCCccc
Q 016946 330 KKCTICQEEYEADDE--------MGKLDCGHSFH 355 (380)
Q Consensus 330 ~~CsICleef~~~e~--------v~~LpCgH~FH 355 (380)
-.|+=|.-.|...|. +....|+|+|+
T Consensus 3 i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred EECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 358888888877654 22335888874
No 142
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=37.47 E-value=12 Score=42.62 Aligned_cols=17 Identities=71% Similarity=1.171 Sum_probs=6.9
Q ss_pred chhhhHHHhhhhhhhhh
Q 016946 188 DRDRDRERERERDRERC 204 (380)
Q Consensus 188 ~r~~~~~~~~~r~~~~~ 204 (380)
+||+++|++|||+|++.
T Consensus 604 ERer~~e~~rerer~~~ 620 (982)
T PF03154_consen 604 ERERERERERERERERE 620 (982)
T ss_pred hhcccccchhhhhhhhh
Confidence 34433333344444443
No 143
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=35.22 E-value=22 Score=26.13 Aligned_cols=23 Identities=26% Similarity=0.888 Sum_probs=14.9
Q ss_pred cCCCcccHHHHHHHHhcCCCCccc
Q 016946 349 DCGHSFHIQCIKQWLSQKNACPVC 372 (380)
Q Consensus 349 pCgH~FH~~CI~~WL~~k~sCPvC 372 (380)
.|||.|-.. |..-......||.|
T Consensus 33 ~Cgh~w~~~-v~~R~~~~~~CP~C 55 (55)
T PF14311_consen 33 KCGHEWKAS-VNDRTRRGKGCPYC 55 (55)
T ss_pred CCCCeeEcc-HhhhccCCCCCCCC
Confidence 366666554 44444677789988
No 144
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.42 E-value=7.8 Score=37.82 Aligned_cols=47 Identities=32% Similarity=0.734 Sum_probs=35.8
Q ss_pred cccccccccccccC-Ccc--eecc--------CCCcccHHHHHHHHhcCC-CCcccccc
Q 016946 329 DKKCTICQEEYEAD-DEM--GKLD--------CGHSFHIQCIKQWLSQKN-ACPVCKAA 375 (380)
Q Consensus 329 d~~CsICleef~~~-e~v--~~Lp--------CgH~FH~~CI~~WL~~k~-sCPvCR~~ 375 (380)
+..|.||...|... ... ..+. |||..+..|+..-+.+.. .||.|+..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 46799999999843 221 2334 999999999999987554 89999863
No 146
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=33.12 E-value=23 Score=26.35 Aligned_cols=42 Identities=26% Similarity=0.559 Sum_probs=19.3
Q ss_pred ccccccccccCCc-------ceeccCCCcccHHHHHHHHhcCCCCcccc
Q 016946 332 CTICQEEYEADDE-------MGKLDCGHSFHIQCIKQWLSQKNACPVCK 373 (380)
Q Consensus 332 CsICleef~~~e~-------v~~LpCgH~FH~~CI~~WL~~k~sCPvCR 373 (380)
|--|+..|..... ...-.|++.|+.+|=.--=+.-..||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 4556666665421 11226999999999321112445799884
No 147
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=32.38 E-value=15 Score=38.16 Aligned_cols=49 Identities=24% Similarity=0.628 Sum_probs=0.0
Q ss_pred cccccccccc--ccc---C---------C-c-ceeccCCCcccHHHHHHHHh---------cCCCCcccccccc
Q 016946 329 DKKCTICQEE--YEA---D---------D-E-MGKLDCGHSFHIQCIKQWLS---------QKNACPVCKAAVV 377 (380)
Q Consensus 329 d~~CsIClee--f~~---~---------e-~-v~~LpCgH~FH~~CI~~WL~---------~k~sCPvCR~~i~ 377 (380)
...|++|+.. |.. + . . -..-||||+--....+-|-. -+..||.|-..|.
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~ 401 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLD 401 (416)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCccc
Confidence 6789999864 210 0 0 1 12338999999999999965 2347999988775
No 148
>PF06752 E_Pc_C: Enhancer of Polycomb C-terminus; InterPro: IPR009607 This entry represents the C terminus of eukaryotic enhancer of polycomb proteins, which have roles in heterochromatin formation []. This family contains several conserved motifs.
Probab=32.37 E-value=37 Score=32.79 Aligned_cols=24 Identities=29% Similarity=0.260 Sum_probs=12.5
Q ss_pred chhcccccccccccccchhhHHHHH
Q 016946 57 AAASQQVSLPAVIRSSADWDAKKVK 81 (380)
Q Consensus 57 ~~~~~~~~~~~~~~s~a~~~~~~~~ 81 (380)
++++++--..++|-.. +..+.+.|
T Consensus 49 DsASAqFAASAlVT~~-qll~~k~K 72 (230)
T PF06752_consen 49 DSASAQFAASALVTAP-QLLAFKTK 72 (230)
T ss_pred cchhhhchhhheeccc-cccchhhh
Confidence 3555555556777554 44444333
No 149
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=31.57 E-value=40 Score=37.11 Aligned_cols=89 Identities=19% Similarity=0.294 Sum_probs=42.0
Q ss_pred CCCHHHHHHhhhhccccCC--CCCHHHHHHHhhhccchhhccccCCCCCCCcccccccccccccCCcceeccCCCcccHH
Q 016946 280 NMSYEELLELGDRIGYVST--GLKEDEIGRCLRKLKNSIINDLSSHLPLHVDKKCTICQEEYEADDEMGKLDCGHSFHIQ 357 (380)
Q Consensus 280 ~msYEeLLeL~e~ig~v~~--GLse~~I~~~l~klk~~~~~~~~~~~~~~~d~~CsICleef~~~e~v~~LpCgH~FH~~ 357 (380)
..+.+.||+....++.... ..+...|++.+ ....+.....-.......|+|+.-.+..+ .+...|.|.=|++
T Consensus 259 ~~t~~~llq~~~~~~~~~~~~~~s~~~~~~~l----~~~~d~~i~tt~~~vSL~CPl~~~Rm~~P--~r~~~CkHlQcFD 332 (636)
T KOG2169|consen 259 GLTSKDLLQRLKQNGKINRNLSQSDALIKKKL----TAGPDSEIATTSLRVSLNCPLSKMRMSLP--ARGHTCKHLQCFD 332 (636)
T ss_pred ccCHHHHHHHHhccCCccCchhHhHHHhhccc----ccCCcccceeccceeEecCCcccceeecC--Ccccccccceecc
Confidence 4566777776666555544 33333222211 11111000000123346788877664433 2444577755544
Q ss_pred HHHHHHhcCC------CCccccccc
Q 016946 358 CIKQWLSQKN------ACPVCKAAV 376 (380)
Q Consensus 358 CI~~WL~~k~------sCPvCR~~i 376 (380)
- .|+.+.+ .||+|.+.+
T Consensus 333 ~--~~~lq~n~~~pTW~CPVC~~~~ 355 (636)
T KOG2169|consen 333 A--LSYLQMNEQKPTWRCPVCQKAA 355 (636)
T ss_pred h--hhhHHhccCCCeeeCccCCccc
Confidence 3 2333211 599997765
No 150
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=31.32 E-value=29 Score=27.32 Aligned_cols=11 Identities=27% Similarity=1.026 Sum_probs=8.4
Q ss_pred ccHHHHHHHHh
Q 016946 354 FHIQCIKQWLS 364 (380)
Q Consensus 354 FH~~CI~~WL~ 364 (380)
||..||..|+.
T Consensus 12 FCRNCLskWy~ 22 (68)
T PF06844_consen 12 FCRNCLSKWYR 22 (68)
T ss_dssp --HHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 151
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=31.15 E-value=21 Score=23.72 Aligned_cols=11 Identities=45% Similarity=0.948 Sum_probs=7.7
Q ss_pred cCCCCcccccc
Q 016946 365 QKNACPVCKAA 375 (380)
Q Consensus 365 ~k~sCPvCR~~ 375 (380)
....||+|...
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 44589999763
No 152
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=30.69 E-value=19 Score=27.29 Aligned_cols=36 Identities=19% Similarity=0.492 Sum_probs=17.9
Q ss_pred CcccccccccccccCCcceec-cCCCcccHHHHHHHH
Q 016946 328 VDKKCTICQEEYEADDEMGKL-DCGHSFHIQCIKQWL 363 (380)
Q Consensus 328 ~d~~CsICleef~~~e~v~~L-pCgH~FH~~CI~~WL 363 (380)
....|.+|...|..-..-..- .||++|+..|....+
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 457899999999653211111 599999999987654
No 153
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=30.47 E-value=63 Score=26.27 Aligned_cols=49 Identities=18% Similarity=0.483 Sum_probs=20.6
Q ss_pred Cccccccccccccc---CCcc-eeccCCCcccHHHHHHHHh-cCCCCccccccc
Q 016946 328 VDKKCTICQEEYEA---DDEM-GKLDCGHSFHIQCIKQWLS-QKNACPVCKAAV 376 (380)
Q Consensus 328 ~d~~CsICleef~~---~e~v-~~LpCgH~FH~~CI~~WL~-~k~sCPvCR~~i 376 (380)
....|.||-++... ++.. ...-|+--.|..|..-=.. ....||-|++..
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~y 61 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRY 61 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B-
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCc
Confidence 35789999998643 3322 2226888889999765443 677899998754
No 154
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.23 E-value=44 Score=28.14 Aligned_cols=36 Identities=17% Similarity=0.355 Sum_probs=29.7
Q ss_pred cccccccccccccCCcceeccCCCcccHHHHHHHHhc
Q 016946 329 DKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQ 365 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~ 365 (380)
+..|.||-.....|+..+.++ .-..|++|+..-...
T Consensus 6 ewkC~VCg~~iieGqkFTF~~-kGsVH~eCl~~s~~~ 41 (103)
T COG4847 6 EWKCYVCGGTIIEGQKFTFTK-KGSVHYECLAESKRK 41 (103)
T ss_pred eeeEeeeCCEeeeccEEEEee-CCcchHHHHHHHHhc
Confidence 578999999999998887788 556899998775543
No 155
>KOG4679 consensus Uncharacterized protein PSP1 (suppressor of DNA polymerase alpha mutations in yeast) [General function prediction only]
Probab=29.48 E-value=15 Score=38.81 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=7.3
Q ss_pred ccccccCCCCccccccccc
Q 016946 134 AQDVWCGPGIGFSASDAVV 152 (380)
Q Consensus 134 ~~~~~~~~g~~~~~~~~~~ 152 (380)
.-|+.-.-|-++-|+++|-
T Consensus 259 lhdlyldcgS~yfaS~~v~ 277 (572)
T KOG4679|consen 259 LHDLYLDCGSFYFASNSVT 277 (572)
T ss_pred HHHHHHhhccceeccccee
Confidence 3444422233333344443
No 156
>KOG1883 consensus Cofactor required for Sp1 transcriptional activation, subunit 3 [Transcription]
Probab=29.04 E-value=23 Score=41.41 Aligned_cols=8 Identities=38% Similarity=0.468 Sum_probs=3.5
Q ss_pred ccCchhHH
Q 016946 6 GESSNSVA 13 (380)
Q Consensus 6 ~~~~~~~~ 13 (380)
||+.++|+
T Consensus 1399 ~~~~pa~s 1406 (1517)
T KOG1883|consen 1399 EESTPAVS 1406 (1517)
T ss_pred ccCCcccc
Confidence 34444444
No 157
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=28.79 E-value=5.8 Score=31.47 Aligned_cols=39 Identities=31% Similarity=0.681 Sum_probs=19.0
Q ss_pred ccccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCccccccc
Q 016946 330 KKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAV 376 (380)
Q Consensus 330 ~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i 376 (380)
..|+.|..++.... +|.+|..|-.. +.....||-|..++
T Consensus 2 ~~CP~C~~~L~~~~-------~~~~C~~C~~~-~~~~a~CPdC~~~L 40 (70)
T PF07191_consen 2 NTCPKCQQELEWQG-------GHYHCEACQKD-YKKEAFCPDCGQPL 40 (70)
T ss_dssp -B-SSS-SBEEEET-------TEEEETTT--E-EEEEEE-TTT-SB-
T ss_pred CcCCCCCCccEEeC-------CEEECcccccc-ceecccCCCcccHH
Confidence 46888888765542 55555556443 34555688887665
No 158
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=27.85 E-value=15 Score=36.53 Aligned_cols=38 Identities=32% Similarity=0.578 Sum_probs=30.4
Q ss_pred CcccccccccccccCCcceeccCCCcccHHHHHHHHhc
Q 016946 328 VDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQ 365 (380)
Q Consensus 328 ~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~ 365 (380)
....|.||+++|..+.....+.|--+||..|+..|+..
T Consensus 213 ~~rvC~~CF~el~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (288)
T KOG1729|consen 213 PIRVCDICFEELEKGARGDREDSLPVFHGKCYPNWLTT 250 (288)
T ss_pred CceecHHHHHHHhcccccchhhcccccccccccccccc
Confidence 34589999999987555566666669999999999974
No 159
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=26.67 E-value=46 Score=33.82 Aligned_cols=44 Identities=9% Similarity=-0.185 Sum_probs=32.6
Q ss_pred cccccccccccccCCcceeccCCC-cccHHHHHHHHhcCCCCcccccccc
Q 016946 329 DKKCTICQEEYEADDEMGKLDCGH-SFHIQCIKQWLSQKNACPVCKAAVV 377 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~LpCgH-~FH~~CI~~WL~~k~sCPvCR~~i~ 377 (380)
..+|-.|-+..... +-.+|+| .|+..|.. +....+||+|.....
T Consensus 343 ~~~~~~~~~~~~st---~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~~ 387 (394)
T KOG2113|consen 343 SLKGTSAGFGLLST---IWSGGNMNLSPGSLAS--ASASPTSSTCDHNDH 387 (394)
T ss_pred hcccccccCceeee---EeecCCcccChhhhhh--cccCCccccccccce
Confidence 35788887765432 3448998 89999987 778899999976543
No 160
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=26.47 E-value=29 Score=23.73 Aligned_cols=26 Identities=31% Similarity=0.773 Sum_probs=17.2
Q ss_pred ccccccccccccCCc--------ceeccCCCccc
Q 016946 330 KKCTICQEEYEADDE--------MGKLDCGHSFH 355 (380)
Q Consensus 330 ~~CsICleef~~~e~--------v~~LpCgH~FH 355 (380)
..|+-|...|..++. +..-.|+|+|.
T Consensus 3 i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred EECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 368888888876653 22225888875
No 161
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=25.60 E-value=26 Score=42.12 Aligned_cols=49 Identities=24% Similarity=0.639 Sum_probs=39.4
Q ss_pred CcccccccccccccCCcceeccCCCcccHHHHHHHHhcCC----CCccccccc
Q 016946 328 VDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKN----ACPVCKAAV 376 (380)
Q Consensus 328 ~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~----sCPvCR~~i 376 (380)
....|-||.....+.+.+...-|.-.||..|+++-+.... .||-|+..-
T Consensus 1107 ~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1107 VNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred chhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 4567999999988866666668999999999999887433 799998753
No 162
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=25.36 E-value=7.2 Score=38.33 Aligned_cols=47 Identities=17% Similarity=0.306 Sum_probs=20.8
Q ss_pred cccccccccccccCCcceec--cCCCcccHHHHHHHHhcCCCCcccccc
Q 016946 329 DKKCTICQEEYEADDEMGKL--DCGHSFHIQCIKQWLSQKNACPVCKAA 375 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~L--pCgH~FH~~CI~~WL~~k~sCPvCR~~ 375 (380)
...|+||=...........- .=.|.+|.-|-..|--....||.|...
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNT 220 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCC
Confidence 36899998875443110000 014677788888998888899999653
No 163
>PF15504 DUF4647: Domain of unknown function (DUF4647)
Probab=25.10 E-value=23 Score=36.81 Aligned_cols=11 Identities=18% Similarity=0.150 Sum_probs=4.5
Q ss_pred HhhCCCchhhH
Q 016946 16 IKERPRNEMSQ 26 (380)
Q Consensus 16 ~~~~~~~~~~q 26 (380)
+|.--.|...+
T Consensus 284 lkKL~~nLk~e 294 (457)
T PF15504_consen 284 LKKLHYNLKTE 294 (457)
T ss_pred HHHHHhhhhhh
Confidence 33333344443
No 164
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=25.05 E-value=24 Score=25.90 Aligned_cols=10 Identities=30% Similarity=1.012 Sum_probs=5.1
Q ss_pred CCcccccccc
Q 016946 368 ACPVCKAAVV 377 (380)
Q Consensus 368 sCPvCR~~i~ 377 (380)
.||+|..++.
T Consensus 22 ~CPlC~r~l~ 31 (54)
T PF04423_consen 22 CCPLCGRPLD 31 (54)
T ss_dssp E-TTT--EE-
T ss_pred cCCCCCCCCC
Confidence 8999988764
No 165
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=24.93 E-value=49 Score=23.89 Aligned_cols=35 Identities=17% Similarity=0.511 Sum_probs=25.2
Q ss_pred ccccccccccccCCccee-ccCCCcccHHHHHHHHh
Q 016946 330 KKCTICQEEYEADDEMGK-LDCGHSFHIQCIKQWLS 364 (380)
Q Consensus 330 ~~CsICleef~~~e~v~~-LpCgH~FH~~CI~~WL~ 364 (380)
..|.+|-..|..-..... ..||++|+..|....+.
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 578999888876422222 26999999999877654
No 166
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=24.59 E-value=39 Score=21.61 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=10.9
Q ss_pred cccccccccccCCcceeccCCCcc
Q 016946 331 KCTICQEEYEADDEMGKLDCGHSF 354 (380)
Q Consensus 331 ~CsICleef~~~e~v~~LpCgH~F 354 (380)
.|+-|-..+.... ...-.|||.|
T Consensus 2 ~CP~C~~~V~~~~-~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESA-KFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhc-CcCCCCCCCC
Confidence 4666666653320 1111377766
No 167
>KOG3263 consensus Nucleic acid binding protein [General function prediction only]
Probab=24.57 E-value=61 Score=30.15 Aligned_cols=11 Identities=45% Similarity=0.915 Sum_probs=5.2
Q ss_pred hhHHHHHHHhh
Q 016946 176 HQRERERERKK 186 (380)
Q Consensus 176 ~~~~r~~~~~~ 186 (380)
++|+|++.|..
T Consensus 12 ~~R~Re~~R~~ 22 (196)
T KOG3263|consen 12 DRRDRERRRSR 22 (196)
T ss_pred chhhHHHhhhH
Confidence 44455544443
No 168
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=24.17 E-value=19 Score=35.95 Aligned_cols=40 Identities=28% Similarity=0.710 Sum_probs=29.2
Q ss_pred cccccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCcccccccc
Q 016946 329 DKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVV 377 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~ 377 (380)
..+|+.|.+.+... .|++-.=.|+||+.|. .|-+|+..+.
T Consensus 92 GTKCsaC~~GIpPt-qVVRkAqd~VYHl~CF--------~C~iC~R~L~ 131 (383)
T KOG4577|consen 92 GTKCSACQEGIPPT-QVVRKAQDFVYHLHCF--------ACFICKRQLA 131 (383)
T ss_pred CCcchhhcCCCChH-HHHHHhhcceeehhhh--------hhHhhhcccc
Confidence 57899999986654 3445567899999995 4888877654
No 169
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=23.59 E-value=41 Score=24.13 Aligned_cols=26 Identities=19% Similarity=0.502 Sum_probs=11.2
Q ss_pred ccccccccccCCcceeccCCCcccHHH
Q 016946 332 CTICQEEYEADDEMGKLDCGHSFHIQC 358 (380)
Q Consensus 332 CsICleef~~~e~v~~LpCgH~FH~~C 358 (380)
|..|...+...+ +....-+..||..|
T Consensus 1 C~~C~~~I~~~~-~~~~~~~~~~H~~C 26 (58)
T PF00412_consen 1 CARCGKPIYGTE-IVIKAMGKFWHPEC 26 (58)
T ss_dssp BTTTSSBESSSS-EEEEETTEEEETTT
T ss_pred CCCCCCCccCcE-EEEEeCCcEEEccc
Confidence 444555544332 11224455555554
No 170
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=23.36 E-value=38 Score=26.02 Aligned_cols=14 Identities=36% Similarity=1.070 Sum_probs=10.7
Q ss_pred cCCCCccccccccc
Q 016946 365 QKNACPVCKAAVVN 378 (380)
Q Consensus 365 ~k~sCPvCR~~i~~ 378 (380)
....||+|..++..
T Consensus 38 ~~p~CPlC~s~M~~ 51 (59)
T PF14169_consen 38 EEPVCPLCKSPMVS 51 (59)
T ss_pred CCccCCCcCCcccc
Confidence 45689999988753
No 171
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=22.95 E-value=25 Score=35.58 Aligned_cols=43 Identities=14% Similarity=0.241 Sum_probs=30.4
Q ss_pred cccccccccccccCCcceec-cCCC-cccHHHHHHH-HhcCCCCcccccc
Q 016946 329 DKKCTICQEEYEADDEMGKL-DCGH-SFHIQCIKQW-LSQKNACPVCKAA 375 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~L-pCgH-~FH~~CI~~W-L~~k~sCPvCR~~ 375 (380)
.-.|.+|.+. +.+..+ +|+| +|+..|...- +++..+||+|-.-
T Consensus 136 ti~~iqq~tn----t~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta 181 (394)
T KOG2113|consen 136 TIKRIQQFTN----TYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTA 181 (394)
T ss_pred ccchheeccc----ceEeeeccCCCceEEEecCCcchhhhccccchhhhh
Confidence 4568888775 333344 8998 8999996665 5567789999653
No 172
>PF11671 Apis_Csd: Complementary sex determiner protein; InterPro: IPR021007 Sex determination proteins are found in eukaryotes. Proteins in this family are typically between 168 and 410 amino acids in length. It plays a role in the gender determination of around 20% of all animals. In the honeybee, the mechanism of sex determination depends on the complementary sex determiner (csd) gene which produces an SR-type protein. Males are homozygous while females are homozygous for the csd gene. Heterozygosity generates an active protein which initiates female development []. This entry represents the C-terminal end of the sex determination protein.
Probab=22.88 E-value=34 Score=30.43 Aligned_cols=21 Identities=48% Similarity=0.914 Sum_probs=0.0
Q ss_pred hhHHHHHHHhhhchhhhHHHh
Q 016946 176 HQRERERERKKRDRDRDRERE 196 (380)
Q Consensus 176 ~~~~r~~~~~~r~r~~~~~~~ 196 (380)
++..|||-|++|+|||.+|+.
T Consensus 27 RetSrERSRdRrEReRsRE~k 47 (146)
T PF11671_consen 27 RETSRERSRDRRERERSRERK 47 (146)
T ss_pred HHhhhhhhhhhhhhhhhcccc
No 173
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=22.60 E-value=36 Score=24.88 Aligned_cols=14 Identities=14% Similarity=0.593 Sum_probs=9.7
Q ss_pred cccccccccccccC
Q 016946 329 DKKCTICQEEYEAD 342 (380)
Q Consensus 329 d~~CsICleef~~~ 342 (380)
...|+.|-++|...
T Consensus 2 ~f~CP~C~~~~~~~ 15 (54)
T PF05605_consen 2 SFTCPYCGKGFSES 15 (54)
T ss_pred CcCCCCCCCccCHH
Confidence 35799998865543
No 174
>PLN02189 cellulose synthase
Probab=21.92 E-value=82 Score=36.73 Aligned_cols=49 Identities=24% Similarity=0.524 Sum_probs=33.4
Q ss_pred Cccccccccccccc---CCcceec-cCCCcccHHHHHHHH-hcCCCCccccccc
Q 016946 328 VDKKCTICQEEYEA---DDEMGKL-DCGHSFHIQCIKQWL-SQKNACPVCKAAV 376 (380)
Q Consensus 328 ~d~~CsICleef~~---~e~v~~L-pCgH~FH~~CI~~WL-~~k~sCPvCR~~i 376 (380)
....|.||-++... ++..+.- -|+--.|..|..-=- +.+..||-|++..
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y 86 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRY 86 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCch
Confidence 35689999998753 3332222 588889999984322 2566899998864
No 175
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.71 E-value=45 Score=36.95 Aligned_cols=41 Identities=22% Similarity=0.505 Sum_probs=28.8
Q ss_pred ccccccccccc-cCCcceeccCCCcccHHHHHHHHhcCCCCcccc
Q 016946 330 KKCTICQEEYE-ADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCK 373 (380)
Q Consensus 330 ~~CsICleef~-~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR 373 (380)
..|-+|+..=. ..+..+.+.|+-.||..| |+.-.+.||+|-
T Consensus 655 r~C~vcq~pedse~~v~rt~~C~~~~C~~c---~~~~~~~~~vC~ 696 (717)
T KOG3726|consen 655 RTCKVCQLPEDSETDVCRTTFCYTPYCVAC---SLDYASISEVCG 696 (717)
T ss_pred HHHHHhcCCcCccccccCccccCCcchHhh---hhhhhccCcccC
Confidence 56888876522 233345568999999998 555677899994
No 176
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.58 E-value=23 Score=31.73 Aligned_cols=17 Identities=24% Similarity=0.686 Sum_probs=13.0
Q ss_pred CCCcccccccccc-cccC
Q 016946 326 LHVDKKCTICQEE-YEAD 342 (380)
Q Consensus 326 ~~~d~~CsIClee-f~~~ 342 (380)
..++..|-||+.. |.++
T Consensus 62 v~ddatC~IC~KTKFADG 79 (169)
T KOG3799|consen 62 VGDDATCGICHKTKFADG 79 (169)
T ss_pred cCcCcchhhhhhcccccc
Confidence 4678899999985 5555
No 177
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.54 E-value=88 Score=25.19 Aligned_cols=46 Identities=26% Similarity=0.676 Sum_probs=29.3
Q ss_pred cccccccccccCCcceeccC--CCcccHHHHHHHHhcCCCCcccccccccC
Q 016946 331 KCTICQEEYEADDEMGKLDC--GHSFHIQCIKQWLSQKNACPVCKAAVVNR 379 (380)
Q Consensus 331 ~CsICleef~~~e~v~~LpC--gH~FH~~CI~~WL~~k~sCPvCR~~i~~~ 379 (380)
.|--|-.++..+ ..-.+-| .|.||.+|...-| ...||-|...++.|
T Consensus 7 nCECCDrDLpp~-s~dA~ICtfEcTFCadCae~~l--~g~CPnCGGelv~R 54 (84)
T COG3813 7 NCECCDRDLPPD-STDARICTFECTFCADCAENRL--HGLCPNCGGELVAR 54 (84)
T ss_pred CCcccCCCCCCC-CCceeEEEEeeehhHhHHHHhh--cCcCCCCCchhhcC
Confidence 344455554332 2223334 3789999988644 67899999888754
No 178
>PF06847 Arc_PepC_II: Archaeal Peptidase A24 C-terminus Type II; InterPro: IPR009655 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This region is of unknown function, which is found at the C terminus of archaeal preflagellin aspartic acid signal peptidases []. The preflagellin peptidase is a membrane-bound enzyme topologically similar to its counterpart in the type IV pilus system (prepilin peptidase); the two enzymes utilizing the same catalytic mechanism []. The preflagellin peptidase is required for the removal of the leader peptide from archaeal flagellin []. Preflagellin aspartic acid signal peptidases belong to the MEROPS peptidase family A24B (preflagellin peptidase, clan AD).; GO: 0008233 peptidase activity; PDB: 3S0X_B.
Probab=21.09 E-value=30 Score=28.75 Aligned_cols=12 Identities=50% Similarity=1.102 Sum_probs=5.4
Q ss_pred cccccCCCCccc
Q 016946 135 QDVWCGPGIGFS 146 (380)
Q Consensus 135 ~~~~~~~g~~~~ 146 (380)
++||=+|||||-
T Consensus 65 ~~VWVTpgiPFl 76 (93)
T PF06847_consen 65 ETVWVTPGIPFL 76 (93)
T ss_dssp -EEEE-----TH
T ss_pred CcEEEeCCCcCH
Confidence 779999999996
No 179
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=20.84 E-value=69 Score=27.20 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=27.2
Q ss_pred cccccccccccccCCcceeccCCCcccHHHHHHHHh
Q 016946 329 DKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLS 364 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~ 364 (380)
...|.||-.++..|+..+.++= -..|+.|+..=..
T Consensus 2 kWkC~iCg~~I~~gqlFTF~~k-G~VH~~C~~~~~~ 36 (101)
T PF09943_consen 2 KWKCYICGKPIYEGQLFTFTKK-GPVHYECFREKAS 36 (101)
T ss_pred ceEEEecCCeeeecceEEEecC-CcEeHHHHHHHHh
Confidence 3689999999999877666654 5689999877544
No 180
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.82 E-value=74 Score=27.50 Aligned_cols=46 Identities=20% Similarity=0.391 Sum_probs=33.5
Q ss_pred cccccccccccccCC---------c--ceeccCCCcccHHHHHHHHhcCCCCccccc
Q 016946 329 DKKCTICQEEYEADD---------E--MGKLDCGHSFHIQCIKQWLSQKNACPVCKA 374 (380)
Q Consensus 329 d~~CsICleef~~~e---------~--v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~ 374 (380)
...|--|+..|.... . -....|.+.|+.+|=.-|-+.-..||-|..
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~~ 111 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCIH 111 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCCC
Confidence 356999999886531 0 113369999999997777777778999963
No 181
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=20.62 E-value=63 Score=20.76 Aligned_cols=29 Identities=17% Similarity=0.511 Sum_probs=10.3
Q ss_pred cccccccccccCCcceeccCCCcccHHHH
Q 016946 331 KCTICQEEYEADDEMGKLDCGHSFHIQCI 359 (380)
Q Consensus 331 ~CsICleef~~~e~v~~LpCgH~FH~~CI 359 (380)
.|.+|.......-.-....|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 47888887655223344578888999886
No 182
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=20.49 E-value=97 Score=26.20 Aligned_cols=24 Identities=21% Similarity=0.626 Sum_probs=18.6
Q ss_pred CCcccHHHHHHHHhc---------CCCCccccc
Q 016946 351 GHSFHIQCIKQWLSQ---------KNACPVCKA 374 (380)
Q Consensus 351 gH~FH~~CI~~WL~~---------k~sCPvCR~ 374 (380)
.=.||..||..++.. .-.||.||.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 667999999998752 236999975
No 183
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=20.47 E-value=26 Score=35.74 Aligned_cols=14 Identities=79% Similarity=1.239 Sum_probs=6.8
Q ss_pred hchhhhHHHhhhhh
Q 016946 187 RDRDRDRERERERD 200 (380)
Q Consensus 187 r~r~~~~~~~~~r~ 200 (380)
++|.+++||+|||+
T Consensus 340 ~~r~~erER~rerd 353 (453)
T KOG2888|consen 340 RDRYRERERDRERD 353 (453)
T ss_pred cchhhhhhhhhhcc
Confidence 44444445555544
No 184
>KOG3537 consensus Adaptor protein NUMB [Signal transduction mechanisms]
Probab=20.16 E-value=81 Score=33.44 Aligned_cols=17 Identities=24% Similarity=0.202 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHhhccCc
Q 016946 26 QQQQQQQQEAAAAKLTP 42 (380)
Q Consensus 26 qqqqqqqq~q~~~q~~~ 42 (380)
||+|++|+|+|++++++
T Consensus 382 q~~~~~qkQ~q~v~~~s 398 (543)
T KOG3537|consen 382 QPLDALQKQFQDVKLIS 398 (543)
T ss_pred CCHHHHHhhhccccccC
Confidence 33334444444444443
No 185
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=20.07 E-value=56 Score=36.12 Aligned_cols=46 Identities=26% Similarity=0.769 Sum_probs=28.2
Q ss_pred cccccccccccc--cCCcceeccCCCcccHHHHHHHHhc---CC--CCccccc
Q 016946 329 DKKCTICQEEYE--ADDEMGKLDCGHSFHIQCIKQWLSQ---KN--ACPVCKA 374 (380)
Q Consensus 329 d~~CsICleef~--~~e~v~~LpCgH~FH~~CI~~WL~~---k~--sCPvCR~ 374 (380)
...|.||-..=. .+-.+..-.|+-.||-.|+.-|+.. .. .||-|+.
T Consensus 18 ~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crv 70 (694)
T KOG4443|consen 18 CLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRV 70 (694)
T ss_pred hhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCcee
Confidence 455666644311 2212222369999999999999872 22 4887764
Done!