Query 016946
Match_columns 380
No_of_seqs 246 out of 1717
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 06:24:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016946.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016946hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.5 3E-15 1E-19 120.7 5.2 79 295-379 12-90 (91)
2 1iym_A EL5; ring-H2 finger, ub 99.5 1.8E-14 6.1E-19 104.7 3.8 51 327-377 3-54 (55)
3 1x4j_A Ring finger protein 38; 99.5 1.8E-14 6.2E-19 111.5 3.2 52 327-378 21-72 (75)
4 2ep4_A Ring finger protein 24; 99.5 3.8E-14 1.3E-18 109.1 5.0 52 327-378 13-64 (74)
5 2kiz_A E3 ubiquitin-protein li 99.5 6.7E-14 2.3E-18 106.3 5.7 52 327-378 12-63 (69)
6 2ect_A Ring finger protein 126 99.4 5.2E-14 1.8E-18 109.4 3.8 52 327-378 13-64 (78)
7 1v87_A Deltex protein 2; ring- 99.4 1.7E-13 5.9E-18 113.8 5.2 51 328-378 24-94 (114)
8 2ecm_A Ring finger and CHY zin 99.4 2.5E-13 8.5E-18 98.4 4.1 50 328-377 4-54 (55)
9 2ea6_A Ring finger protein 4; 99.4 3.4E-13 1.2E-17 101.6 4.5 53 327-379 13-69 (69)
10 2ecl_A Ring-box protein 2; RNF 99.4 2.5E-13 8.4E-18 107.4 3.1 50 329-378 15-76 (81)
11 3ng2_A RNF4, snurf, ring finge 99.4 3.3E-13 1.1E-17 102.6 3.7 52 327-378 8-63 (71)
12 3dpl_R Ring-box protein 1; ubi 99.3 1.2E-12 4E-17 109.3 4.9 49 328-376 36-99 (106)
13 2xeu_A Ring finger protein 4; 99.3 1E-12 3.4E-17 97.6 3.4 50 329-378 3-56 (64)
14 2d8t_A Dactylidin, ring finger 99.3 1.1E-12 3.9E-17 100.4 2.9 48 327-377 13-60 (71)
15 1chc_A Equine herpes virus-1 r 99.2 2.6E-12 8.8E-17 97.1 3.4 48 328-377 4-51 (68)
16 2djb_A Polycomb group ring fin 99.2 4.6E-12 1.6E-16 97.2 4.9 49 327-378 13-62 (72)
17 4ayc_A E3 ubiquitin-protein li 99.2 2.1E-12 7E-17 111.5 2.6 47 329-378 53-99 (138)
18 2ecn_A Ring finger protein 141 99.2 2.7E-12 9.1E-17 97.6 2.2 48 327-378 13-60 (70)
19 2ct2_A Tripartite motif protei 99.2 1E-11 3.4E-16 97.9 5.1 51 327-377 13-67 (88)
20 2csy_A Zinc finger protein 183 99.2 7.2E-12 2.5E-16 98.1 4.3 48 327-377 13-60 (81)
21 2ysl_A Tripartite motif-contai 99.2 1.1E-11 3.7E-16 94.7 4.6 49 327-378 18-69 (73)
22 2d8s_A Cellular modulator of i 99.2 6.8E-12 2.3E-16 99.6 3.1 51 327-378 13-70 (80)
23 2ecy_A TNF receptor-associated 99.2 1.2E-11 4.3E-16 93.1 4.4 49 327-378 13-62 (66)
24 2yur_A Retinoblastoma-binding 99.2 1E-11 3.5E-16 96.0 3.9 48 327-377 13-63 (74)
25 4a0k_B E3 ubiquitin-protein li 99.2 2.8E-12 9.6E-17 109.0 0.4 49 328-376 47-110 (117)
26 1t1h_A Gspef-atpub14, armadill 99.1 2.3E-11 8E-16 94.3 4.4 49 327-378 6-55 (78)
27 3lrq_A E3 ubiquitin-protein li 99.1 1.3E-11 4.5E-16 100.9 3.0 47 328-377 21-69 (100)
28 2ecw_A Tripartite motif-contai 99.1 3.3E-11 1.1E-15 93.9 4.9 48 327-377 17-70 (85)
29 2ysj_A Tripartite motif-contai 99.1 3.8E-11 1.3E-15 89.5 4.8 43 327-372 18-63 (63)
30 4ap4_A E3 ubiquitin ligase RNF 99.1 2.7E-11 9.3E-16 101.7 3.8 51 328-378 6-60 (133)
31 2egp_A Tripartite motif-contai 99.1 1.5E-11 5E-16 95.2 1.8 48 327-377 10-64 (79)
32 2ckl_B Ubiquitin ligase protei 99.1 2.9E-11 9.8E-16 107.0 3.7 48 328-377 53-101 (165)
33 2ecv_A Tripartite motif-contai 99.1 4.1E-11 1.4E-15 93.3 4.0 48 327-377 17-70 (85)
34 2y43_A E3 ubiquitin-protein li 99.1 3.7E-11 1.3E-15 97.5 3.7 46 329-377 22-68 (99)
35 2ckl_A Polycomb group ring fin 99.1 4.1E-11 1.4E-15 98.8 4.0 48 328-378 14-62 (108)
36 3ztg_A E3 ubiquitin-protein li 99.1 7.3E-11 2.5E-15 94.2 4.9 47 327-376 11-60 (92)
37 2ecj_A Tripartite motif-contai 99.1 5.7E-11 1.9E-15 86.6 3.8 43 327-372 13-58 (58)
38 3fl2_A E3 ubiquitin-protein li 99.1 3.9E-11 1.3E-15 101.3 3.4 48 328-378 51-99 (124)
39 1jm7_A BRCA1, breast cancer ty 99.0 1.2E-10 4E-15 95.9 3.4 47 329-378 21-70 (112)
40 4ap4_A E3 ubiquitin ligase RNF 99.0 1.2E-10 4.2E-15 97.7 3.5 52 327-378 70-125 (133)
41 3l11_A E3 ubiquitin-protein li 99.0 4.4E-11 1.5E-15 99.6 0.2 48 327-377 13-61 (115)
42 1g25_A CDK-activating kinase a 99.0 2.6E-10 8.9E-15 85.5 4.3 50 329-378 3-55 (65)
43 1z6u_A NP95-like ring finger p 99.0 2E-10 7E-15 100.9 4.0 48 328-378 77-125 (150)
44 3hct_A TNF receptor-associated 99.0 2.1E-10 7.1E-15 96.2 3.5 49 327-378 16-65 (118)
45 2ct0_A Non-SMC element 1 homol 99.0 3.3E-10 1.1E-14 88.9 4.1 50 327-378 13-64 (74)
46 1rmd_A RAG1; V(D)J recombinati 98.9 4.3E-10 1.5E-14 93.7 3.4 46 329-377 23-69 (116)
47 2kr4_A Ubiquitin conjugation f 98.9 7.7E-10 2.6E-14 88.2 4.3 49 327-378 12-60 (85)
48 2vje_A E3 ubiquitin-protein li 98.9 5E-10 1.7E-14 84.7 3.0 50 326-378 5-57 (64)
49 2kre_A Ubiquitin conjugation f 98.9 1.1E-09 3.8E-14 90.1 3.9 49 327-378 27-75 (100)
50 1e4u_A Transcriptional repress 98.8 1.9E-09 6.5E-14 85.0 4.6 51 327-378 9-62 (78)
51 1wgm_A Ubiquitin conjugation f 98.8 1.7E-09 5.9E-14 88.7 4.4 49 327-378 20-69 (98)
52 3knv_A TNF receptor-associated 98.8 7.9E-10 2.7E-14 96.2 2.2 47 327-376 29-76 (141)
53 1bor_A Transcription factor PM 98.8 5.3E-10 1.8E-14 82.1 0.4 45 327-377 4-48 (56)
54 2y1n_A E3 ubiquitin-protein li 98.8 2.7E-09 9.2E-14 107.2 4.5 47 329-378 332-379 (389)
55 1jm7_B BARD1, BRCA1-associated 98.8 9.3E-10 3.2E-14 92.1 0.7 44 329-377 22-66 (117)
56 4ic3_A E3 ubiquitin-protein li 98.8 1.4E-09 4.7E-14 84.3 1.0 43 329-378 24-67 (74)
57 2vje_B MDM4 protein; proto-onc 98.7 3E-09 1E-13 80.1 2.7 49 327-378 5-56 (63)
58 2c2l_A CHIP, carboxy terminus 98.7 5.4E-09 1.8E-13 98.0 3.9 49 327-378 206-255 (281)
59 3hcs_A TNF receptor-associated 98.7 7.4E-09 2.5E-13 91.7 3.5 49 327-378 16-65 (170)
60 2yu4_A E3 SUMO-protein ligase 98.7 7.9E-09 2.7E-13 83.6 3.1 46 327-375 5-59 (94)
61 2ecg_A Baculoviral IAP repeat- 98.6 1.3E-08 4.6E-13 78.7 2.1 44 329-379 25-69 (75)
62 3k1l_B Fancl; UBC, ring, RWD, 98.5 1.2E-08 4.2E-13 100.8 1.1 52 327-378 306-373 (381)
63 2f42_A STIP1 homology and U-bo 98.5 5E-08 1.7E-12 88.5 4.4 49 327-378 104-153 (179)
64 1vyx_A ORF K3, K3RING; zinc-bi 98.5 7.9E-08 2.7E-12 72.1 4.1 49 327-378 4-59 (60)
65 2ea5_A Cell growth regulator w 98.4 9.3E-08 3.2E-12 73.2 3.0 45 327-378 13-58 (68)
66 2yho_A E3 ubiquitin-protein li 98.4 3.7E-08 1.3E-12 77.5 0.6 43 329-378 18-61 (79)
67 1wim_A KIAA0161 protein; ring 98.4 8.9E-08 3.1E-12 77.0 2.8 47 329-375 5-61 (94)
68 2bay_A PRE-mRNA splicing facto 98.3 2.9E-07 9.8E-12 69.2 2.3 47 329-378 3-50 (61)
69 3t6p_A Baculoviral IAP repeat- 98.3 1.1E-07 3.8E-12 94.2 -0.0 44 328-378 294-338 (345)
70 3htk_C E3 SUMO-protein ligase 98.2 3.4E-07 1.2E-11 87.5 3.0 48 328-377 180-231 (267)
71 3vk6_A E3 ubiquitin-protein li 97.8 1.4E-05 4.6E-10 65.9 3.8 45 331-377 3-48 (101)
72 3nw0_A Non-structural maintena 97.5 5.3E-05 1.8E-09 71.3 3.8 47 329-377 180-228 (238)
73 2ko5_A Ring finger protein Z; 95.1 0.0069 2.4E-07 49.2 1.6 47 328-379 27-74 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 94.1 0.029 1E-06 44.8 3.0 34 329-362 3-36 (101)
75 4b8c_D Glucose-repressible alc 93.5 0.013 4.4E-07 62.6 -0.1 7 22-28 71-77 (727)
76 2lri_C Autoimmune regulator; Z 93.5 0.055 1.9E-06 41.0 3.4 47 328-377 11-61 (66)
77 1wil_A KIAA1045 protein; ring 91.0 0.22 7.6E-06 39.7 4.2 35 327-362 13-47 (89)
78 2l5u_A Chromodomain-helicase-D 87.6 0.24 8.3E-06 36.5 2.0 46 327-375 9-58 (61)
79 1f62_A Transcription factor WS 86.0 0.3 1E-05 34.4 1.7 44 331-374 2-49 (51)
80 1we9_A PHD finger family prote 85.7 0.15 5.1E-06 37.7 -0.1 48 327-374 4-57 (64)
81 3m62_A Ubiquitin conjugation f 84.5 1.1 3.9E-05 49.5 6.1 48 327-377 889-937 (968)
82 2k16_A Transcription initiatio 83.5 0.28 9.6E-06 37.3 0.6 50 328-377 17-70 (75)
83 3i2d_A E3 SUMO-protein ligase 82.2 1.8 6.1E-05 43.1 5.9 47 328-377 248-299 (371)
84 4fo9_A E3 SUMO-protein ligase 81.6 2.4 8.1E-05 42.0 6.5 48 328-377 214-265 (360)
85 1mm2_A MI2-beta; PHD, zinc fin 81.5 0.26 9E-06 36.4 -0.2 48 327-377 7-58 (61)
86 1xwh_A Autoimmune regulator; P 80.6 0.22 7.5E-06 37.3 -1.0 46 327-375 6-55 (66)
87 2yt5_A Metal-response element- 80.5 0.28 9.5E-06 36.4 -0.4 53 327-379 4-65 (66)
88 2puy_A PHD finger protein 21A; 79.3 0.15 5E-06 37.4 -2.3 46 328-376 4-53 (60)
89 2ysm_A Myeloid/lymphoid or mix 78.4 0.44 1.5E-05 38.9 0.1 38 327-364 5-42 (111)
90 2yql_A PHD finger protein 21A; 78.3 0.2 7E-06 36.2 -1.7 45 327-374 7-55 (56)
91 1wem_A Death associated transc 75.2 1.1 3.9E-05 34.1 1.6 47 329-376 16-71 (76)
92 3v43_A Histone acetyltransfera 74.6 3.6 0.00012 33.6 4.7 33 328-360 4-42 (112)
93 2e6r_A Jumonji/ARID domain-con 73.9 0.29 1E-05 39.1 -2.1 48 327-374 14-65 (92)
94 1wep_A PHF8; structural genomi 73.6 2 6.9E-05 33.0 2.7 46 330-376 13-64 (79)
95 2lv9_A Histone-lysine N-methyl 73.4 0.66 2.3E-05 37.4 -0.1 45 330-375 29-76 (98)
96 2l43_A N-teminal domain from h 72.9 0.61 2.1E-05 37.0 -0.4 50 327-376 23-76 (88)
97 1fp0_A KAP-1 corepressor; PHD 72.7 1.1 3.6E-05 35.9 0.9 46 327-375 23-72 (88)
98 2ku3_A Bromodomain-containing 71.7 1.3 4.6E-05 33.7 1.3 48 327-374 14-65 (71)
99 1wen_A Inhibitor of growth fam 69.6 2.4 8.3E-05 32.2 2.3 47 329-379 16-69 (71)
100 2lbm_A Transcriptional regulat 67.2 4.9 0.00017 34.7 4.0 46 327-375 61-117 (142)
101 2kgg_A Histone demethylase jar 67.1 1.5 5.1E-05 31.1 0.6 43 331-373 4-52 (52)
102 2cs3_A Protein C14ORF4, MY039 65.1 10 0.00035 29.9 5.0 38 327-364 13-51 (93)
103 1wew_A DNA-binding family prot 64.8 2.3 7.7E-05 32.7 1.3 47 329-376 16-73 (78)
104 2vpb_A Hpygo1, pygopus homolog 64.1 4.6 0.00016 30.1 2.9 47 327-373 6-64 (65)
105 1weu_A Inhibitor of growth fam 63.7 3 0.0001 33.4 1.8 44 329-376 36-86 (91)
106 2ri7_A Nucleosome-remodeling f 62.8 1.8 6.2E-05 37.7 0.5 46 328-374 7-58 (174)
107 1wev_A Riken cDNA 1110020M19; 62.3 1 3.5E-05 35.6 -1.1 48 328-375 15-72 (88)
108 3v43_A Histone acetyltransfera 61.2 1.9 6.5E-05 35.3 0.3 44 331-374 63-111 (112)
109 3shb_A E3 ubiquitin-protein li 60.6 1.1 3.7E-05 34.8 -1.3 44 331-374 28-76 (77)
110 2e6s_A E3 ubiquitin-protein li 56.0 2.1 7.1E-05 33.1 -0.3 45 330-374 27-76 (77)
111 3o70_A PHD finger protein 13; 55.8 1.6 5.5E-05 32.9 -1.0 45 329-374 19-66 (68)
112 3ask_A E3 ubiquitin-protein li 53.0 2.6 9E-05 39.1 -0.2 46 330-375 175-225 (226)
113 2xb1_A Pygopus homolog 2, B-ce 52.3 5.8 0.0002 32.2 1.8 47 329-375 3-61 (105)
114 1wee_A PHD finger family prote 51.8 1.6 5.6E-05 32.9 -1.6 46 329-375 16-66 (72)
115 2kwj_A Zinc finger protein DPF 51.7 7.1 0.00024 31.9 2.2 33 330-362 2-41 (114)
116 3asl_A E3 ubiquitin-protein li 51.5 2.4 8.3E-05 32.0 -0.6 45 331-375 20-69 (70)
117 1weo_A Cellulose synthase, cat 50.4 28 0.00096 27.9 5.4 49 328-376 15-68 (93)
118 2kwj_A Zinc finger protein DPF 50.0 1 3.5E-05 37.1 -3.2 46 331-376 60-109 (114)
119 2ysm_A Myeloid/lymphoid or mix 47.5 2.2 7.7E-05 34.6 -1.5 45 331-375 56-104 (111)
120 2zet_C Melanophilin; complex, 46.5 12 0.0004 32.6 2.9 46 328-374 67-116 (153)
121 1z60_A TFIIH basal transcripti 46.1 8 0.00027 28.5 1.5 43 330-372 16-58 (59)
122 1zbd_B Rabphilin-3A; G protein 45.9 14 0.00049 31.3 3.3 34 327-360 53-88 (134)
123 1joc_A EEA1, early endosomal a 45.4 10 0.00035 31.6 2.3 35 328-362 68-103 (125)
124 2d8v_A Zinc finger FYVE domain 45.3 6.5 0.00022 29.8 0.9 31 328-362 7-38 (67)
125 1y02_A CARP2, FYVE-ring finger 45.0 2.5 8.5E-05 35.5 -1.6 47 327-373 17-64 (120)
126 1z2q_A LM5-1; membrane protein 44.9 12 0.00042 28.8 2.5 36 327-362 19-55 (84)
127 3t7l_A Zinc finger FYVE domain 43.5 12 0.00041 29.4 2.3 36 328-363 19-55 (90)
128 3c6w_A P28ING5, inhibitor of g 43.2 3.8 0.00013 29.9 -0.7 42 329-374 9-57 (59)
129 4gne_A Histone-lysine N-methyl 42.8 9.3 0.00032 31.3 1.6 45 327-376 13-63 (107)
130 2vnf_A ING 4, P29ING4, inhibit 42.3 3.8 0.00013 29.9 -0.8 42 329-374 10-58 (60)
131 2yw8_A RUN and FYVE domain-con 41.8 12 0.00043 28.7 2.1 35 328-362 18-53 (82)
132 3ql9_A Transcriptional regulat 41.5 20 0.00069 30.3 3.5 46 327-375 55-111 (129)
133 1x4u_A Zinc finger, FYVE domai 41.4 13 0.00045 28.6 2.2 36 327-362 12-48 (84)
134 3mpx_A FYVE, rhogef and PH dom 41.0 5.7 0.00019 39.0 0.0 50 328-377 374-431 (434)
135 3o7a_A PHD finger protein 13 v 38.9 3.9 0.00013 28.8 -1.2 42 333-374 7-51 (52)
136 2rsd_A E3 SUMO-protein ligase 38.9 2.9 9.8E-05 31.2 -2.0 43 330-374 11-64 (68)
137 1iml_A CRIP, cysteine rich int 38.7 9.8 0.00034 28.0 1.0 43 330-376 28-71 (76)
138 3kqi_A GRC5, PHD finger protei 37.4 9.6 0.00033 28.8 0.8 46 330-375 10-61 (75)
139 2cu8_A Cysteine-rich protein 2 37.2 14 0.00047 27.2 1.6 40 329-378 9-48 (76)
140 1vfy_A Phosphatidylinositol-3- 35.3 19 0.00063 27.1 2.1 34 329-362 11-45 (73)
141 1dvp_A HRS, hepatocyte growth 34.6 14 0.00048 33.3 1.6 35 328-362 160-195 (220)
142 2dj7_A Actin-binding LIM prote 34.3 30 0.001 25.9 3.2 40 328-377 14-53 (80)
143 2jvx_A NF-kappa-B essential mo 34.3 8.5 0.00029 24.3 0.0 13 366-378 3-15 (28)
144 1wfk_A Zinc finger, FYVE domai 34.1 18 0.00063 28.3 2.0 35 328-362 8-43 (88)
145 3zyq_A Hepatocyte growth facto 33.7 15 0.00052 33.5 1.7 35 328-362 163-198 (226)
146 2co8_A NEDD9 interacting prote 33.3 19 0.00064 27.1 1.9 41 328-378 14-54 (82)
147 2g6q_A Inhibitor of growth pro 30.9 7.8 0.00027 28.5 -0.7 42 329-374 11-59 (62)
148 2gmg_A Hypothetical protein PF 30.8 11 0.00039 30.9 0.2 28 346-378 69-96 (105)
149 1wyh_A SLIM 2, skeletal muscle 29.9 27 0.00092 25.1 2.2 39 330-377 6-44 (72)
150 1x63_A Skeletal muscle LIM-pro 29.7 34 0.0012 25.3 2.8 41 329-378 15-55 (82)
151 2jmi_A Protein YNG1, ING1 homo 27.2 11 0.00036 30.1 -0.6 42 329-374 26-75 (90)
152 1x4k_A Skeletal muscle LIM-pro 26.3 34 0.0012 24.5 2.2 39 330-377 6-44 (72)
153 2l3k_A Rhombotin-2, linker, LI 26.0 26 0.00089 28.4 1.6 32 331-363 38-69 (123)
154 1x61_A Thyroid receptor intera 26.0 38 0.0013 24.3 2.4 32 331-364 35-66 (72)
155 1zfo_A LAsp-1; LIM domain, zin 25.9 19 0.00066 22.6 0.6 28 329-358 3-30 (31)
156 2dar_A PDZ and LIM domain prot 25.8 29 0.00098 26.4 1.8 38 329-377 25-62 (90)
157 3fyb_A Protein of unknown func 25.7 26 0.00089 28.5 1.5 11 354-364 42-52 (104)
158 2o35_A Hypothetical protein DU 25.5 26 0.00091 28.5 1.5 11 354-364 43-53 (105)
159 1x64_A Alpha-actinin-2 associa 25.2 38 0.0013 25.6 2.4 39 329-378 25-63 (89)
160 1m3v_A FLIN4, fusion of the LI 24.9 49 0.0017 26.7 3.1 49 330-378 33-81 (122)
161 1x62_A C-terminal LIM domain p 24.5 31 0.0011 25.5 1.7 38 329-377 15-52 (79)
162 1x4l_A Skeletal muscle LIM-pro 24.4 41 0.0014 24.2 2.3 40 329-377 5-46 (72)
163 3f6q_B LIM and senescent cell 23.3 27 0.00091 24.9 1.0 41 329-378 11-51 (72)
164 1g47_A Pinch protein; LIM doma 22.7 42 0.0014 24.4 2.1 40 329-377 11-50 (77)
165 2d8z_A Four and A half LIM dom 22.2 48 0.0016 23.6 2.3 26 330-358 6-31 (70)
166 1x68_A FHL5 protein; four-and- 21.8 47 0.0016 24.2 2.2 40 329-377 5-46 (76)
167 3mjh_B Early endosome antigen 21.4 26 0.00089 23.0 0.6 10 330-339 6-15 (34)
168 2ct7_A Ring finger protein 31; 21.1 8.3 0.00028 29.9 -2.3 16 349-364 48-63 (86)
169 3pwf_A Rubrerythrin; non heme 20.6 38 0.0013 29.6 1.7 23 346-375 140-162 (170)
170 2xjy_A Rhombotin-2; oncoprotei 20.0 60 0.002 26.1 2.7 25 352-376 52-76 (131)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.55 E-value=3e-15 Score=120.70 Aligned_cols=79 Identities=25% Similarity=0.520 Sum_probs=61.1
Q ss_pred ccCCCCCHHHHHHHhhhccchhhccccCCCCCCCcccccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCccccc
Q 016946 295 YVSTGLKEDEIGRCLRKLKNSIINDLSSHLPLHVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKA 374 (380)
Q Consensus 295 ~v~~GLse~~I~~~l~klk~~~~~~~~~~~~~~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~ 374 (380)
....|++++.|..+........ . .....+..|+||+++|..++.+..|+|||.||..||..||..+.+||+||.
T Consensus 12 ~~~~~~s~~~i~~lp~~~~~~~----~--~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~ 85 (91)
T 2l0b_A 12 VANPPASKESIDALPEILVTED----H--GAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRC 85 (91)
T ss_dssp SCCCCCCHHHHHTSCEEECCTT----C--SSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCC
T ss_pred cCCCCCCHHHHHhCCCeeeccc----c--cccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCc
Confidence 3456888888776542221111 1 112456789999999999888889999999999999999999999999999
Q ss_pred ccccC
Q 016946 375 AVVNR 379 (380)
Q Consensus 375 ~i~~~ 379 (380)
.+...
T Consensus 86 ~~~~~ 90 (91)
T 2l0b_A 86 MFPPP 90 (91)
T ss_dssp BSSCC
T ss_pred cCCCC
Confidence 98764
No 2
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.47 E-value=1.8e-14 Score=104.66 Aligned_cols=51 Identities=37% Similarity=0.970 Sum_probs=46.7
Q ss_pred CCcccccccccccccCCcceecc-CCCcccHHHHHHHHhcCCCCcccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLD-CGHSFHIQCIKQWLSQKNACPVCKAAVV 377 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~Lp-CgH~FH~~CI~~WL~~k~sCPvCR~~i~ 377 (380)
+++..|+||+++|..++.+..++ |||.||..||.+|+..+.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 45678999999999988888897 9999999999999999999999999874
No 3
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.8e-14 Score=111.49 Aligned_cols=52 Identities=29% Similarity=0.859 Sum_probs=48.0
Q ss_pred CCcccccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCccccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVVN 378 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~~ 378 (380)
..+..|+||+++|..++.+..|+|+|.||..||..||..+.+||+||+.+..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 4567899999999999888999999999999999999999999999998865
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=3.8e-14 Score=109.12 Aligned_cols=52 Identities=33% Similarity=1.000 Sum_probs=47.7
Q ss_pred CCcccccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCccccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVVN 378 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~~ 378 (380)
..+..|+||++.|..++.+..|+|+|.||..||.+||..+.+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 4568899999999998888888999999999999999999999999998864
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.45 E-value=6.7e-14 Score=106.31 Aligned_cols=52 Identities=35% Similarity=0.914 Sum_probs=47.4
Q ss_pred CCcccccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCccccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVVN 378 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~~ 378 (380)
..+..|+||++.|..++.+..|+|||.||..||..||..+.+||+||..|..
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 4567899999999888888899999999999999999999999999998864
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.43 E-value=5.2e-14 Score=109.38 Aligned_cols=52 Identities=35% Similarity=0.956 Sum_probs=47.7
Q ss_pred CCcccccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCccccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVVN 378 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~~ 378 (380)
..+..|+||++.|..++.+..|+|+|.||..||..||..+.+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence 4568899999999988888889999999999999999999999999998864
No 7
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.40 E-value=1.7e-13 Score=113.82 Aligned_cols=51 Identities=25% Similarity=0.612 Sum_probs=41.8
Q ss_pred CcccccccccccccCC---------------cceeccCCCcccHHHHHHHH-----hcCCCCccccccccc
Q 016946 328 VDKKCTICQEEYEADD---------------EMGKLDCGHSFHIQCIKQWL-----SQKNACPVCKAAVVN 378 (380)
Q Consensus 328 ~d~~CsICleef~~~e---------------~v~~LpCgH~FH~~CI~~WL-----~~k~sCPvCR~~i~~ 378 (380)
.+..|+||++.|..+. .+..++|+|.||..||..|| ..+.+||+||+.+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 3568999999997653 23367999999999999999 457799999998754
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.37 E-value=2.5e-13 Score=98.40 Aligned_cols=50 Identities=28% Similarity=0.652 Sum_probs=43.8
Q ss_pred CcccccccccccccC-CcceeccCCCcccHHHHHHHHhcCCCCcccccccc
Q 016946 328 VDKKCTICQEEYEAD-DEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVV 377 (380)
Q Consensus 328 ~d~~CsICleef~~~-e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~ 377 (380)
.+..|+||++.|... +.+..++|||.||..||..||.....||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 467899999999664 34677799999999999999999999999999875
No 9
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=3.4e-13 Score=101.62 Aligned_cols=53 Identities=28% Similarity=0.724 Sum_probs=45.6
Q ss_pred CCcccccccccccccC----CcceeccCCCcccHHHHHHHHhcCCCCcccccccccC
Q 016946 327 HVDKKCTICQEEYEAD----DEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVVNR 379 (380)
Q Consensus 327 ~~d~~CsICleef~~~----e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~~~ 379 (380)
.++..|+||++.|... ..+..++|||.||..||..||..+..||+||..|..|
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~r 69 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 69 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCcC
Confidence 4578899999999864 3346789999999999999999999999999998654
No 10
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=2.5e-13 Score=107.39 Aligned_cols=50 Identities=34% Similarity=0.808 Sum_probs=40.0
Q ss_pred cccccccccccc-----------cCCcceec-cCCCcccHHHHHHHHhcCCCCccccccccc
Q 016946 329 DKKCTICQEEYE-----------ADDEMGKL-DCGHSFHIQCIKQWLSQKNACPVCKAAVVN 378 (380)
Q Consensus 329 d~~CsICleef~-----------~~e~v~~L-pCgH~FH~~CI~~WL~~k~sCPvCR~~i~~ 378 (380)
++.|+||+++|. .++.++.+ +|+|.||..||.+||..+++||+||+++..
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 456777776664 44556666 499999999999999999999999998753
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.35 E-value=3.3e-13 Score=102.57 Aligned_cols=52 Identities=29% Similarity=0.721 Sum_probs=45.4
Q ss_pred CCcccccccccccccC----CcceeccCCCcccHHHHHHHHhcCCCCccccccccc
Q 016946 327 HVDKKCTICQEEYEAD----DEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVVN 378 (380)
Q Consensus 327 ~~d~~CsICleef~~~----e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~~ 378 (380)
.++..|+||++.|... +.+..++|||.||..||..||..+.+||+||..+..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 4578899999998764 455788999999999999999999999999998864
No 12
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.31 E-value=1.2e-12 Score=109.31 Aligned_cols=49 Identities=29% Similarity=0.691 Sum_probs=42.5
Q ss_pred CcccccccccccccCC---------------cceeccCCCcccHHHHHHHHhcCCCCccccccc
Q 016946 328 VDKKCTICQEEYEADD---------------EMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAV 376 (380)
Q Consensus 328 ~d~~CsICleef~~~e---------------~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i 376 (380)
.++.|+||++.|.... .+..++|+|.||..||.+||..+.+||+||+.+
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 4688999999988541 356679999999999999999999999999985
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.29 E-value=1e-12 Score=97.57 Aligned_cols=50 Identities=30% Similarity=0.753 Sum_probs=43.8
Q ss_pred cccccccccccccC----CcceeccCCCcccHHHHHHHHhcCCCCccccccccc
Q 016946 329 DKKCTICQEEYEAD----DEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVVN 378 (380)
Q Consensus 329 d~~CsICleef~~~----e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~~ 378 (380)
+..|+||++.|... +.+..++|||.||..||..|+..+..||+||..+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 57899999999764 445678999999999999999999999999998864
No 14
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1.1e-12 Score=100.38 Aligned_cols=48 Identities=23% Similarity=0.505 Sum_probs=43.3
Q ss_pred CCcccccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCcccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVV 377 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~ 377 (380)
..+..|+||++.|... +.|+|||.||..||..||.....||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 13 LTVPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SSCCBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCCCCCccCCcccCCC---EEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 4568899999999765 77899999999999999999999999999875
No 15
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.25 E-value=2.6e-12 Score=97.06 Aligned_cols=48 Identities=38% Similarity=0.855 Sum_probs=42.5
Q ss_pred CcccccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCcccccccc
Q 016946 328 VDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVV 377 (380)
Q Consensus 328 ~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~ 377 (380)
.+..|+||++.+.. .+..++|||.||..||..|+..+.+||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCeeCCccccC--CcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 46789999999875 3578899999999999999999999999999875
No 16
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=4.6e-12 Score=97.21 Aligned_cols=49 Identities=27% Similarity=0.574 Sum_probs=43.0
Q ss_pred CCcccccccccccccCCcceec-cCCCcccHHHHHHHHhcCCCCccccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKL-DCGHSFHIQCIKQWLSQKNACPVCKAAVVN 378 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~L-pCgH~FH~~CI~~WL~~k~sCPvCR~~i~~ 378 (380)
..+..|+||++.|.+. ..+ +|||.||..||..||..+..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 13 TPYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp CGGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred CCCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence 4568899999999875 455 999999999999999999999999998754
No 17
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.23 E-value=2.1e-12 Score=111.51 Aligned_cols=47 Identities=34% Similarity=0.936 Sum_probs=42.5
Q ss_pred cccccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCccccccccc
Q 016946 329 DKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVVN 378 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~~ 378 (380)
+..|+||++.|..+ +.|+|||.||..||..|+..+.+||+||..+..
T Consensus 53 ~~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred cCCCcccCcccCCc---eECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 56799999999875 688999999999999999999999999998753
No 18
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=2.7e-12 Score=97.64 Aligned_cols=48 Identities=29% Similarity=0.824 Sum_probs=43.0
Q ss_pred CCcccccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCccccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVVN 378 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~~ 378 (380)
..+..|+||++.|.. ..++|||.||..||..|+.....||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence 456789999999876 678999999999999999999999999998764
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=1e-11 Score=97.94 Aligned_cols=51 Identities=27% Similarity=0.664 Sum_probs=43.9
Q ss_pred CCcccccccccccccCCc-ceeccCCCcccHHHHHHHHhcC---CCCcccccccc
Q 016946 327 HVDKKCTICQEEYEADDE-MGKLDCGHSFHIQCIKQWLSQK---NACPVCKAAVV 377 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~-v~~LpCgH~FH~~CI~~WL~~k---~sCPvCR~~i~ 377 (380)
.....|+||++.|...+. ...|+|||.||..||..|+... ..||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 456789999999988554 5678999999999999999975 79999999764
No 20
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=7.2e-12 Score=98.12 Aligned_cols=48 Identities=19% Similarity=0.542 Sum_probs=42.7
Q ss_pred CCcccccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCcccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVV 377 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~ 377 (380)
.....|+||++.|... ..++|||.||..||..|+.....||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 3467899999999765 57899999999999999999999999999874
No 21
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.1e-11 Score=94.70 Aligned_cols=49 Identities=33% Similarity=0.732 Sum_probs=42.3
Q ss_pred CCcccccccccccccCCcceeccCCCcccHHHHHHHHh---cCCCCccccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLS---QKNACPVCKAAVVN 378 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~---~k~sCPvCR~~i~~ 378 (380)
..+..|+||++.|... ..|+|||.||..||..|+. ....||+||..+..
T Consensus 18 ~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 18 QEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCBCTTTCSBCSSE---EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred ccCCEeccCCcccCCe---EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 4568899999999865 6779999999999999997 46689999998864
No 22
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=6.8e-12 Score=99.65 Aligned_cols=51 Identities=25% Similarity=0.698 Sum_probs=43.6
Q ss_pred CCcccccccccccccCCcceeccCC-----CcccHHHHHHHHhcC--CCCccccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCG-----HSFHIQCIKQWLSQK--NACPVCKAAVVN 378 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCg-----H~FH~~CI~~WL~~k--~sCPvCR~~i~~ 378 (380)
..+..|.||+++|..++.+ .+||. |.||..||.+||..+ .+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 4467899999999887776 58996 999999999999966 499999998753
No 23
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.2e-11 Score=93.11 Aligned_cols=49 Identities=27% Similarity=0.638 Sum_probs=42.3
Q ss_pred CCcccccccccccccCCcceeccCCCcccHHHHHHHHh-cCCCCccccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLS-QKNACPVCKAAVVN 378 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~-~k~sCPvCR~~i~~ 378 (380)
.++..|+||++.|... ..++|||.||..||..|+. ....||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCCEECTTTCCEESSC---CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CcCCCCCCCChHhcCe---eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 4568899999999876 5589999999999999995 66799999998864
No 24
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.18 E-value=1e-11 Score=95.97 Aligned_cols=48 Identities=27% Similarity=0.642 Sum_probs=42.0
Q ss_pred CCcccccccccccccCCcceecc-CCCcccHHHHHHHHhcC--CCCcccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLD-CGHSFHIQCIKQWLSQK--NACPVCKAAVV 377 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~Lp-CgH~FH~~CI~~WL~~k--~sCPvCR~~i~ 377 (380)
..+..|+||++.|... +.|+ |||.||..||..||..+ ..||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 13 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 4568899999999876 6788 99999999999999865 69999999754
No 25
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.17 E-value=2.8e-12 Score=108.99 Aligned_cols=49 Identities=29% Similarity=0.731 Sum_probs=1.1
Q ss_pred CcccccccccccccC-------------C--cceeccCCCcccHHHHHHHHhcCCCCccccccc
Q 016946 328 VDKKCTICQEEYEAD-------------D--EMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAV 376 (380)
Q Consensus 328 ~d~~CsICleef~~~-------------e--~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i 376 (380)
.++.|+||++.|... + .+..++|+|.||..||.+||..+++||+||.++
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp CC--------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCee
Confidence 468999999999753 1 233358999999999999999999999999985
No 26
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.14 E-value=2.3e-11 Score=94.26 Aligned_cols=49 Identities=18% Similarity=0.474 Sum_probs=43.2
Q ss_pred CCcccccccccccccCCcceeccCCCcccHHHHHHHHhc-CCCCccccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQ-KNACPVCKAAVVN 378 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~-k~sCPvCR~~i~~ 378 (380)
..+..|+||++.|.++ +.++|||.||..||..||.. ..+||+|+..+..
T Consensus 6 ~~~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred cccCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 4578999999999876 67899999999999999996 7899999998753
No 27
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.14 E-value=1.3e-11 Score=100.91 Aligned_cols=47 Identities=28% Similarity=0.737 Sum_probs=41.5
Q ss_pred CcccccccccccccCCccee-ccCCCcccHHHHHHHHhcC-CCCcccccccc
Q 016946 328 VDKKCTICQEEYEADDEMGK-LDCGHSFHIQCIKQWLSQK-NACPVCKAAVV 377 (380)
Q Consensus 328 ~d~~CsICleef~~~e~v~~-LpCgH~FH~~CI~~WL~~k-~sCPvCR~~i~ 377 (380)
++..|+||++.|..+ +. ++|||.||..||..||... ..||+||..+.
T Consensus 21 ~~~~C~IC~~~~~~p---~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 21 EVFRCFICMEKLRDA---RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCccCCccccCc---cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 367899999999865 55 8999999999999999977 69999999875
No 28
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.13 E-value=3.3e-11 Score=93.91 Aligned_cols=48 Identities=33% Similarity=0.684 Sum_probs=42.5
Q ss_pred CCcccccccccccccCCcceeccCCCcccHHHHHHHHhc------CCCCcccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQ------KNACPVCKAAVV 377 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~------k~sCPvCR~~i~ 377 (380)
..+..|+||++.|... ..++|||.||..||..|+.. ...||+||..+.
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 17 KEEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp CTTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred ccCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 4567899999999876 57899999999999999997 779999999875
No 29
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=3.8e-11 Score=89.49 Aligned_cols=43 Identities=33% Similarity=0.779 Sum_probs=38.0
Q ss_pred CCcccccccccccccCCcceeccCCCcccHHHHHHHHh---cCCCCccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLS---QKNACPVC 372 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~---~k~sCPvC 372 (380)
..+..|+||++.|... +.|+|||.||..||..|+. ....||+|
T Consensus 18 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4568899999999876 6789999999999999998 56689998
No 30
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.11 E-value=2.7e-11 Score=101.70 Aligned_cols=51 Identities=29% Similarity=0.736 Sum_probs=44.7
Q ss_pred CcccccccccccccC----CcceeccCCCcccHHHHHHHHhcCCCCccccccccc
Q 016946 328 VDKKCTICQEEYEAD----DEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVVN 378 (380)
Q Consensus 328 ~d~~CsICleef~~~----e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~~ 378 (380)
++..|+||++.|..+ +.+..++|||.||..||.+||..+.+||+||+.+..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 467899999999764 445788999999999999999999999999998754
No 31
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.11 E-value=1.5e-11 Score=95.23 Aligned_cols=48 Identities=35% Similarity=0.699 Sum_probs=42.1
Q ss_pred CCcccccccccccccCCcceeccCCCcccHHHHHHHHhc-------CCCCcccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQ-------KNACPVCKAAVV 377 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~-------k~sCPvCR~~i~ 377 (380)
..+..|+||++.|... ..|+|||.||..||..|+.. ...||+||..+.
T Consensus 10 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 10 QEEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred ccCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 4568899999999875 56899999999999999986 678999999875
No 32
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.10 E-value=2.9e-11 Score=106.97 Aligned_cols=48 Identities=29% Similarity=0.701 Sum_probs=41.3
Q ss_pred CcccccccccccccCCcceeccCCCcccHHHHHHHHhc-CCCCcccccccc
Q 016946 328 VDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQ-KNACPVCKAAVV 377 (380)
Q Consensus 328 ~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~-k~sCPvCR~~i~ 377 (380)
.+..|+||++.|... +..++|||.||..||..||.. ...||+||..+.
T Consensus 53 ~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLKNT--MTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCSSE--EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCcccChHhhCc--CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 457899999999864 444499999999999999996 789999999874
No 33
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=4.1e-11 Score=93.31 Aligned_cols=48 Identities=33% Similarity=0.745 Sum_probs=42.4
Q ss_pred CCcccccccccccccCCcceeccCCCcccHHHHHHHHhc------CCCCcccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQ------KNACPVCKAAVV 377 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~------k~sCPvCR~~i~ 377 (380)
..+..|+||++.|... ..|+|||.||..||..|+.. ...||+||..+.
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 17 KEEVTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred cCCCCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 4567899999999765 56799999999999999987 789999999875
No 34
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.09 E-value=3.7e-11 Score=97.47 Aligned_cols=46 Identities=33% Similarity=0.769 Sum_probs=41.2
Q ss_pred cccccccccccccCCcceec-cCCCcccHHHHHHHHhcCCCCcccccccc
Q 016946 329 DKKCTICQEEYEADDEMGKL-DCGHSFHIQCIKQWLSQKNACPVCKAAVV 377 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~L-pCgH~FH~~CI~~WL~~k~sCPvCR~~i~ 377 (380)
+..|+||++.|..+ ..+ +|||.||..||..|+..+..||+||..+.
T Consensus 22 ~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 68 (99)
T 2y43_A 22 LLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVT 68 (99)
T ss_dssp HTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCC
Confidence 57899999999865 455 99999999999999999999999999875
No 35
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.09 E-value=4.1e-11 Score=98.84 Aligned_cols=48 Identities=27% Similarity=0.696 Sum_probs=42.3
Q ss_pred CcccccccccccccCCcceec-cCCCcccHHHHHHHHhcCCCCccccccccc
Q 016946 328 VDKKCTICQEEYEADDEMGKL-DCGHSFHIQCIKQWLSQKNACPVCKAAVVN 378 (380)
Q Consensus 328 ~d~~CsICleef~~~e~v~~L-pCgH~FH~~CI~~WL~~k~sCPvCR~~i~~ 378 (380)
.+..|+||++.|... +.+ +|||.||..||..|+.....||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDA---TTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CcCCCccCChHHhCc---CEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 467899999999765 555 999999999999999999999999998753
No 36
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.08 E-value=7.3e-11 Score=94.24 Aligned_cols=47 Identities=26% Similarity=0.632 Sum_probs=41.4
Q ss_pred CCcccccccccccccCCcceecc-CCCcccHHHHHHHHhcC--CCCccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLD-CGHSFHIQCIKQWLSQK--NACPVCKAAV 376 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~Lp-CgH~FH~~CI~~WL~~k--~sCPvCR~~i 376 (380)
.++..|+||++.|..+ +.|+ |||.||..||..|+... ..||+||..+
T Consensus 11 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 11 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 4578999999999876 6888 99999999999999743 5999999986
No 37
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=5.7e-11 Score=86.59 Aligned_cols=43 Identities=35% Similarity=0.983 Sum_probs=37.2
Q ss_pred CCcccccccccccccCCcceeccCCCcccHHHHHHHHh---cCCCCccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLS---QKNACPVC 372 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~---~k~sCPvC 372 (380)
.++..|+||++.|... ..|+|||.||..||..|+. ....||+|
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4567899999999876 5689999999999999954 56799998
No 38
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.08 E-value=3.9e-11 Score=101.31 Aligned_cols=48 Identities=21% Similarity=0.459 Sum_probs=41.7
Q ss_pred CcccccccccccccCCcceeccCCCcccHHHHHHHHhcCC-CCccccccccc
Q 016946 328 VDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKN-ACPVCKAAVVN 378 (380)
Q Consensus 328 ~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~-sCPvCR~~i~~ 378 (380)
++..|+||++.|..+ +.++|||.||..||..|+.... .||+||..+..
T Consensus 51 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 357899999999876 6789999999999999998544 99999998854
No 39
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.01 E-value=1.2e-10 Score=95.93 Aligned_cols=47 Identities=32% Similarity=0.690 Sum_probs=40.8
Q ss_pred cccccccccccccCCcceeccCCCcccHHHHHHHHhcCC---CCccccccccc
Q 016946 329 DKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKN---ACPVCKAAVVN 378 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~---sCPvCR~~i~~ 378 (380)
...|+||++.|... ..++|||.||..||..|+.... .||+||..+..
T Consensus 21 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 46899999999766 5689999999999999999664 89999998753
No 40
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.01 E-value=1.2e-10 Score=97.66 Aligned_cols=52 Identities=29% Similarity=0.721 Sum_probs=44.8
Q ss_pred CCcccccccccccccC----CcceeccCCCcccHHHHHHHHhcCCCCccccccccc
Q 016946 327 HVDKKCTICQEEYEAD----DEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVVN 378 (380)
Q Consensus 327 ~~d~~CsICleef~~~----e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~~ 378 (380)
.....|+||++.|... ..+..++|||.||..||.+||..+++||+||..+..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 4578899999998763 334677999999999999999999999999998864
No 41
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.99 E-value=4.4e-11 Score=99.60 Aligned_cols=48 Identities=25% Similarity=0.598 Sum_probs=42.2
Q ss_pred CCcccccccccccccCCcceeccCCCcccHHHHHHHHhc-CCCCcccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQ-KNACPVCKAAVV 377 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~-k~sCPvCR~~i~ 377 (380)
.++..|+||++.|... +.|+|||.||..||..|+.. ...||+||..+.
T Consensus 13 ~~~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 13 LSECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHHHBCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 4467899999999876 77899999999999999986 678999999874
No 42
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.99 E-value=2.6e-10 Score=85.55 Aligned_cols=50 Identities=22% Similarity=0.592 Sum_probs=40.5
Q ss_pred ccccccccc-ccccCCcc-eeccCCCcccHHHHHHHHhc-CCCCccccccccc
Q 016946 329 DKKCTICQE-EYEADDEM-GKLDCGHSFHIQCIKQWLSQ-KNACPVCKAAVVN 378 (380)
Q Consensus 329 d~~CsICle-ef~~~e~v-~~LpCgH~FH~~CI~~WL~~-k~sCPvCR~~i~~ 378 (380)
+..|+||++ .|...... ..++|||.||..||..|+.. ...||+||..+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 568999999 77765432 45799999999999999774 4689999998753
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.98 E-value=2e-10 Score=100.90 Aligned_cols=48 Identities=21% Similarity=0.499 Sum_probs=42.0
Q ss_pred CcccccccccccccCCcceeccCCCcccHHHHHHHHhcCC-CCccccccccc
Q 016946 328 VDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKN-ACPVCKAAVVN 378 (380)
Q Consensus 328 ~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~-sCPvCR~~i~~ 378 (380)
.+..|+||++.|..+ +.|+|||.||..||..||.... .||+||..+..
T Consensus 77 ~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 77 QSFMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp HHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 357899999999876 6789999999999999999655 89999998764
No 44
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.97 E-value=2.1e-10 Score=96.23 Aligned_cols=49 Identities=24% Similarity=0.576 Sum_probs=42.8
Q ss_pred CCcccccccccccccCCcceeccCCCcccHHHHHHHHhcCC-CCccccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKN-ACPVCKAAVVN 378 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~-sCPvCR~~i~~ 378 (380)
..+..|+||++.|..+ +.++|||.||..||..||.... .||+||..+..
T Consensus 16 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 16 ESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 4567999999999876 6789999999999999999765 99999998753
No 45
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.96 E-value=3.3e-10 Score=88.87 Aligned_cols=50 Identities=22% Similarity=0.592 Sum_probs=41.9
Q ss_pred CCcccccccccccccCCcceeccCCCcccHHHHHHHHhcC--CCCccccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQK--NACPVCKAAVVN 378 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k--~sCPvCR~~i~~ 378 (380)
+....|+||.+.|..++ ....|+|.||..||.+||..+ .+||+|+..+..
T Consensus 13 ~~i~~C~IC~~~i~~g~--~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSCBCSSSCCBCSSSE--ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCCcCcchhhHcccCC--ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 34578999999998763 334899999999999999977 899999998753
No 46
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.92 E-value=4.3e-10 Score=93.69 Aligned_cols=46 Identities=26% Similarity=0.590 Sum_probs=41.2
Q ss_pred cccccccccccccCCcceeccCCCcccHHHHHHHHhc-CCCCcccccccc
Q 016946 329 DKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQ-KNACPVCKAAVV 377 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~-k~sCPvCR~~i~ 377 (380)
+..|+||++.|..+ ..++|||.||..||..||.. ...||+||..+.
T Consensus 23 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (116)
T 1rmd_A 23 SISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCF 69 (116)
T ss_dssp HTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCC
Confidence 57899999999866 66899999999999999996 779999999875
No 47
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.90 E-value=7.7e-10 Score=88.21 Aligned_cols=49 Identities=10% Similarity=0.088 Sum_probs=44.2
Q ss_pred CCcccccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCccccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVVN 378 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~~ 378 (380)
..+..|+||++.|.++ +.++|||.|+..||..||....+||+|+..+..
T Consensus 12 p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhcCC---eECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 3468899999999988 788999999999999999988999999988753
No 48
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.90 E-value=5e-10 Score=84.71 Aligned_cols=50 Identities=26% Similarity=0.582 Sum_probs=42.5
Q ss_pred CCCcccccccccccccCCcceec--cCCCc-ccHHHHHHHHhcCCCCccccccccc
Q 016946 326 LHVDKKCTICQEEYEADDEMGKL--DCGHS-FHIQCIKQWLSQKNACPVCKAAVVN 378 (380)
Q Consensus 326 ~~~d~~CsICleef~~~e~v~~L--pCgH~-FH~~CI~~WL~~k~sCPvCR~~i~~ 378 (380)
..++..|.||++.+.+. ..+ ||||. |+..|+..|+.....||+||..|..
T Consensus 5 ~~~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 5 LNAIEPCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp CGGGSCCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CCCcCCCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 35678899999987654 444 99999 8999999999999999999998854
No 49
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.86 E-value=1.1e-09 Score=90.08 Aligned_cols=49 Identities=10% Similarity=0.091 Sum_probs=44.3
Q ss_pred CCcccccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCccccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVVN 378 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~~ 378 (380)
..+..|+||++.|.++ +.++|||.|+..||..||....+||+|+.++..
T Consensus 27 p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccCC---eECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 3468899999999988 788999999999999999988999999998753
No 50
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.84 E-value=1.9e-09 Score=84.98 Aligned_cols=51 Identities=24% Similarity=0.546 Sum_probs=41.1
Q ss_pred CCcccccccccccccCCcceec--cCCCcccHHHHHHHHh-cCCCCccccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKL--DCGHSFHIQCIKQWLS-QKNACPVCKAAVVN 378 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~L--pCgH~FH~~CI~~WL~-~k~sCPvCR~~i~~ 378 (380)
+++..|+||++.+...+.. .+ +|||.||..||..|+. ....||+||+.+..
T Consensus 9 ~~~~~CpICle~~~~~d~~-~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDIN-FFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTT-CCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred ccCCcCCccCccCcccccc-ccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 5578899999998654443 44 4999999999999985 46789999998754
No 51
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.84 E-value=1.7e-09 Score=88.67 Aligned_cols=49 Identities=10% Similarity=-0.019 Sum_probs=44.3
Q ss_pred CCcccccccccccccCCcceeccCC-CcccHHHHHHHHhcCCCCccccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCG-HSFHIQCIKQWLSQKNACPVCKAAVVN 378 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCg-H~FH~~CI~~WL~~k~sCPvCR~~i~~ 378 (380)
..+..|+||++.|.++ ++++|| |.|+..||..||....+||+|+.++..
T Consensus 20 p~~~~CpI~~~~m~dP---V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccCC---eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 3467899999999988 789999 999999999999998999999998753
No 52
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.83 E-value=7.9e-10 Score=96.23 Aligned_cols=47 Identities=21% Similarity=0.521 Sum_probs=41.4
Q ss_pred CCcccccccccccccCCcceeccCCCcccHHHHHHHHhcCC-CCccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKN-ACPVCKAAV 376 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~-sCPvCR~~i 376 (380)
..+..|+||++.|..+ +.++|||.||..||..|+.... .||+||.++
T Consensus 29 ~~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 29 EAKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CcCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 4568899999999877 6789999999999999998665 899999875
No 53
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.81 E-value=5.3e-10 Score=82.14 Aligned_cols=45 Identities=27% Similarity=0.558 Sum_probs=38.9
Q ss_pred CCcccccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCcccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVV 377 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~ 377 (380)
.++..|+||++.|... ..|+|||.||..||..| ...||+||+.+.
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCCe---EEcCCCCcccHHHHccC---CCCCCcCCcEee
Confidence 3467899999999876 78899999999999884 678999999875
No 54
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.78 E-value=2.7e-09 Score=107.20 Aligned_cols=47 Identities=26% Similarity=0.721 Sum_probs=41.7
Q ss_pred cccccccccccccCCcceeccCCCcccHHHHHHHHh-cCCCCccccccccc
Q 016946 329 DKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLS-QKNACPVCKAAVVN 378 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~-~k~sCPvCR~~i~~ 378 (380)
...|+||++.+... ..++|||.||..||..|+. ....||+||..+..
T Consensus 332 ~~~C~ICle~~~~p---v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBCCE---EEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCccCcCCCCe---EEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 46899999998664 7889999999999999999 78899999998753
No 55
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.77 E-value=9.3e-10 Score=92.11 Aligned_cols=44 Identities=25% Similarity=0.631 Sum_probs=39.5
Q ss_pred cccccccccccccCCcceec-cCCCcccHHHHHHHHhcCCCCcccccccc
Q 016946 329 DKKCTICQEEYEADDEMGKL-DCGHSFHIQCIKQWLSQKNACPVCKAAVV 377 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~L-pCgH~FH~~CI~~WL~~k~sCPvCR~~i~ 377 (380)
+..|+||++.|..+ +.| +|||.||..||..|+. ..||+||..+.
T Consensus 22 ~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred CCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 57899999999876 666 9999999999999998 88999999874
No 56
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.76 E-value=1.4e-09 Score=84.31 Aligned_cols=43 Identities=30% Similarity=0.642 Sum_probs=38.2
Q ss_pred cccccccccccccCCcceeccCCCc-ccHHHHHHHHhcCCCCccccccccc
Q 016946 329 DKKCTICQEEYEADDEMGKLDCGHS-FHIQCIKQWLSQKNACPVCKAAVVN 378 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~LpCgH~-FH~~CI~~WL~~k~sCPvCR~~i~~ 378 (380)
+..|+||++.+... ..|||||. ||..|+..| ..||+||..+..
T Consensus 24 ~~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIAI---VFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCCE---EEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCCE---EEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 57899999998765 77899999 999999999 899999998864
No 57
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.75 E-value=3e-09 Score=80.09 Aligned_cols=49 Identities=20% Similarity=0.583 Sum_probs=41.2
Q ss_pred CCcccccccccccccCCcceec--cCCCc-ccHHHHHHHHhcCCCCccccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKL--DCGHS-FHIQCIKQWLSQKNACPVCKAAVVN 378 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~L--pCgH~-FH~~CI~~WL~~k~sCPvCR~~i~~ 378 (380)
..+..|.||++.+.+. ..+ ||||. |+..|+..|......||+||..|..
T Consensus 5 ~~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDG---NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GGGSBCTTTSSSBSCE---EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred CcCCCCcccCCcCCCe---EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 3467899999987654 344 99998 9999999999988999999998854
No 58
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.71 E-value=5.4e-09 Score=97.96 Aligned_cols=49 Identities=14% Similarity=0.096 Sum_probs=42.7
Q ss_pred CCcccccccccccccCCcceeccCCCcccHHHHHHHHhcC-CCCccccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQK-NACPVCKAAVVN 378 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k-~sCPvCR~~i~~ 378 (380)
.....|+||++.|.++ ++++|||+||..||..||... .+||+|+.++..
T Consensus 206 ~~~~~c~i~~~~~~dP---v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhcCC---eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 4567899999999988 789999999999999999864 459999998753
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.68 E-value=7.4e-09 Score=91.69 Aligned_cols=49 Identities=24% Similarity=0.581 Sum_probs=42.5
Q ss_pred CCcccccccccccccCCcceeccCCCcccHHHHHHHHhcC-CCCccccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQK-NACPVCKAAVVN 378 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k-~sCPvCR~~i~~ 378 (380)
.++..|+||++.|..+ +.++|||.||..||..||... ..||+||..+..
T Consensus 16 ~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 16 ESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 4578999999999876 678999999999999999864 499999998754
No 60
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.67 E-value=7.9e-09 Score=83.65 Aligned_cols=46 Identities=26% Similarity=0.593 Sum_probs=39.4
Q ss_pred CCcccccccccccccCCcceecc-CCCcccHHHHHHHHhcC------CCCcc--cccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLD-CGHSFHIQCIKQWLSQK------NACPV--CKAA 375 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~Lp-CgH~FH~~CI~~WL~~k------~sCPv--CR~~ 375 (380)
..+..|+||++.|.++ ++++ |||+|+..||..||... .+||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 3468899999999987 6775 99999999999999854 48999 9855
No 61
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=1.3e-08 Score=78.71 Aligned_cols=44 Identities=30% Similarity=0.655 Sum_probs=37.0
Q ss_pred cccccccccccccCCcceeccCCCc-ccHHHHHHHHhcCCCCcccccccccC
Q 016946 329 DKKCTICQEEYEADDEMGKLDCGHS-FHIQCIKQWLSQKNACPVCKAAVVNR 379 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~LpCgH~-FH~~CI~~WL~~k~sCPvCR~~i~~~ 379 (380)
+..|+||++.+... ..+||||. ||..|+.. ...||+||..+..+
T Consensus 25 ~~~C~IC~~~~~~~---~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNIAI---VFVPCGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCCCB---CCSSSCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCcCCCCCCCE---EEecCCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 46799999998765 67899999 99999964 47899999988653
No 62
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.55 E-value=1.2e-08 Score=100.78 Aligned_cols=52 Identities=25% Similarity=0.654 Sum_probs=40.6
Q ss_pred CCcccccccccccccCCcce-----eccCCCcccHHHHHHHHhcC-----------CCCccccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMG-----KLDCGHSFHIQCIKQWLSQK-----------NACPVCKAAVVN 378 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~-----~LpCgH~FH~~CI~~WL~~k-----------~sCPvCR~~i~~ 378 (380)
+....|+||++.+.....+- -+.|+|.||..||.+||... +.||+|+.+|..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 34678999999988743322 23799999999999999842 479999998864
No 63
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.52 E-value=5e-08 Score=88.48 Aligned_cols=49 Identities=14% Similarity=0.087 Sum_probs=42.7
Q ss_pred CCcccccccccccccCCcceeccCCCcccHHHHHHHHhcC-CCCccccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQK-NACPVCKAAVVN 378 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k-~sCPvCR~~i~~ 378 (380)
.....|+||++.|.++ +.++|||+|+..||..||... .+||+|+.++..
T Consensus 104 p~~f~CPI~~elm~DP---V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCCCC---eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 4578899999999987 788999999999999999864 469999998753
No 64
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.49 E-value=7.9e-08 Score=72.10 Aligned_cols=49 Identities=31% Similarity=0.692 Sum_probs=38.6
Q ss_pred CCcccccccccccccCCcceeccCC--C---cccHHHHHHHHhc--CCCCccccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCG--H---SFHIQCIKQWLSQ--KNACPVCKAAVVN 378 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCg--H---~FH~~CI~~WL~~--k~sCPvCR~~i~~ 378 (380)
++...|.||+++. ++++ .+||. | .||..||.+||.. +.+||+|+..+.-
T Consensus 4 ~~~~~CrIC~~~~--~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEEL--GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEEC--SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCC--CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 4567899999984 3344 57855 4 9999999999984 6789999998754
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=9.3e-08 Score=73.16 Aligned_cols=45 Identities=29% Similarity=0.610 Sum_probs=37.8
Q ss_pred CCcccccccccccccCCcceeccCCCc-ccHHHHHHHHhcCCCCccccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHS-FHIQCIKQWLSQKNACPVCKAAVVN 378 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~-FH~~CI~~WL~~k~sCPvCR~~i~~ 378 (380)
.++..|.||++.+... +.|||||. ||..|+.. ...||+||..|..
T Consensus 13 ~~~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNW---VLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCCC---EETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCCE---EEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 4467899999987654 78899999 99999984 5799999998864
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.41 E-value=3.7e-08 Score=77.46 Aligned_cols=43 Identities=33% Similarity=0.695 Sum_probs=36.8
Q ss_pred cccccccccccccCCcceeccCCCc-ccHHHHHHHHhcCCCCccccccccc
Q 016946 329 DKKCTICQEEYEADDEMGKLDCGHS-FHIQCIKQWLSQKNACPVCKAAVVN 378 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~LpCgH~-FH~~CI~~WL~~k~sCPvCR~~i~~ 378 (380)
+..|.||++.+... ..+||||. ||..|+..| ..||+||..+..
T Consensus 18 ~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEINS---TFCPCGHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBCCE---EEETTCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred CCEeEEeCcccCcE---EEECCCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 56899999987664 78899999 999999887 399999998754
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.41 E-value=8.9e-08 Score=76.95 Aligned_cols=47 Identities=26% Similarity=0.649 Sum_probs=38.5
Q ss_pred cccccccccccccCCcceeccCCCcccHHHHHHHHhc--------CCCCcc--cccc
Q 016946 329 DKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQ--------KNACPV--CKAA 375 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~--------k~sCPv--CR~~ 375 (380)
...|+||+++|...+.+..++|||.||..||..++.. .-.||. |+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 5689999999987654444589999999999999873 237999 9987
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.26 E-value=2.9e-07 Score=69.16 Aligned_cols=47 Identities=11% Similarity=0.153 Sum_probs=41.0
Q ss_pred cccccccccccccCCcceec-cCCCcccHHHHHHHHhcCCCCccccccccc
Q 016946 329 DKKCTICQEEYEADDEMGKL-DCGHSFHIQCIKQWLSQKNACPVCKAAVVN 378 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~L-pCgH~FH~~CI~~WL~~k~sCPvCR~~i~~ 378 (380)
...|+||++.+.++ +.+ +|||+|...||.+||..+.+||+++.++..
T Consensus 3 ~~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp -CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred eEEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 35799999999976 566 899999999999999988899999988753
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.26 E-value=1.1e-07 Score=94.19 Aligned_cols=44 Identities=20% Similarity=0.680 Sum_probs=38.7
Q ss_pred CcccccccccccccCCcceeccCCCc-ccHHHHHHHHhcCCCCccccccccc
Q 016946 328 VDKKCTICQEEYEADDEMGKLDCGHS-FHIQCIKQWLSQKNACPVCKAAVVN 378 (380)
Q Consensus 328 ~d~~CsICleef~~~e~v~~LpCgH~-FH~~CI~~WL~~k~sCPvCR~~i~~ 378 (380)
++..|+||++.+... +.|||||. ||..|+..| ..||+||..+..
T Consensus 294 ~~~~C~IC~~~~~~~---v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVSV---VFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCCE---EEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCce---EEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 357899999998765 78899999 999999988 789999998864
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.25 E-value=3.4e-07 Score=87.51 Aligned_cols=48 Identities=29% Similarity=0.630 Sum_probs=40.1
Q ss_pred CcccccccccccccCCcceeccCCCcccHHHHHHHHhcC--CCCcc--cccccc
Q 016946 328 VDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQK--NACPV--CKAAVV 377 (380)
Q Consensus 328 ~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k--~sCPv--CR~~i~ 377 (380)
.+..|+||++.|.++ |+.+.|||.|+..||..|+... ..||+ |+..+.
T Consensus 180 ~el~CPIcl~~f~DP--Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 180 IELTCPITCKPYEAP--LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp CCSBCTTTSSBCSSE--EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred eeeECcCccCcccCC--eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 456899999999876 4445999999999999999854 47999 998764
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.78 E-value=1.4e-05 Score=65.88 Aligned_cols=45 Identities=22% Similarity=0.453 Sum_probs=36.8
Q ss_pred cccccccccccCCcceeccCCCcccHHHHHHHHh-cCCCCcccccccc
Q 016946 331 KCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLS-QKNACPVCKAAVV 377 (380)
Q Consensus 331 ~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~-~k~sCPvCR~~i~ 377 (380)
.|.+|--.+..- .+.+||.|+||.+|+..|.. ..++||.|+..|.
T Consensus 3 fC~~C~~Pi~iy--gRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKVY--GRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSEE--EEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeEEE--eeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 588887776653 35569999999999999986 5789999999875
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.49 E-value=5.3e-05 Score=71.28 Aligned_cols=47 Identities=23% Similarity=0.609 Sum_probs=38.7
Q ss_pred cccccccccccccCCcceeccCCCcccHHHHHHHHhcCC--CCcccccccc
Q 016946 329 DKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKN--ACPVCKAAVV 377 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~--sCPvCR~~i~ 377 (380)
...|.||.+-...+ ...-.|+|.||..|+..|+.... .||.|+..+.
T Consensus 180 i~~C~iC~~iv~~g--~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 180 VKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp CCBCTTTCSBCSSC--EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCcCcchhhHHhCC--cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 57899999998876 23335999999999999998654 9999998764
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.09 E-value=0.0069 Score=49.24 Aligned_cols=47 Identities=30% Similarity=0.718 Sum_probs=39.4
Q ss_pred CcccccccccccccCCcceeccCC-CcccHHHHHHHHhcCCCCcccccccccC
Q 016946 328 VDKKCTICQEEYEADDEMGKLDCG-HSFHIQCIKQWLSQKNACPVCKAAVVNR 379 (380)
Q Consensus 328 ~d~~CsICleef~~~e~v~~LpCg-H~FH~~CI~~WL~~k~sCPvCR~~i~~~ 379 (380)
.-..|-.|+-.+. ..+.|. |.+|..||.-.|.....||||+.++..+
T Consensus 27 G~~nCKsCWf~~k-----~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 27 GPQFCKSCWFENK-----GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCCCSSCSCCS-----SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred CcccChhhccccC-----CeeeecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 4578999997743 355665 9999999999999999999999998765
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.05 E-value=0.029 Score=44.77 Aligned_cols=34 Identities=21% Similarity=0.473 Sum_probs=26.1
Q ss_pred cccccccccccccCCcceeccCCCcccHHHHHHH
Q 016946 329 DKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQW 362 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~W 362 (380)
+..|.||++.|...-....+.|+|.||..|+..|
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 5689999987543323344899999999999983
No 75
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=93.51 E-value=0.013 Score=62.59 Aligned_cols=7 Identities=29% Similarity=0.306 Sum_probs=2.6
Q ss_pred chhhHHH
Q 016946 22 NEMSQQQ 28 (380)
Q Consensus 22 ~~~~qqq 28 (380)
|.|+|||
T Consensus 71 ~~~~~~~ 77 (727)
T 4b8c_D 71 NAMKKYL 77 (727)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 3343333
No 76
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=93.48 E-value=0.055 Score=40.97 Aligned_cols=47 Identities=21% Similarity=0.553 Sum_probs=34.5
Q ss_pred CcccccccccccccCCcceeccCCCcccHHHHHHHHhcCC----CCcccccccc
Q 016946 328 VDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKN----ACPVCKAAVV 377 (380)
Q Consensus 328 ~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~----sCPvCR~~i~ 377 (380)
....|.||.+. ++.+..-.|...||..|+.+.|.... .||.|.....
T Consensus 11 ~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~ 61 (66)
T 2lri_C 11 PGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVT 61 (66)
T ss_dssp TTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCC
T ss_pred CCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCCc
Confidence 45779999753 34333337999999999999887433 7999976543
No 77
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=90.99 E-value=0.22 Score=39.67 Aligned_cols=35 Identities=23% Similarity=0.580 Sum_probs=25.0
Q ss_pred CCcccccccccccccCCcceeccCCCcccHHHHHHH
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQW 362 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~W 362 (380)
..++.|.||- .|...+..-.--|+-+||..|+.+.
T Consensus 13 ~~D~~C~VC~-~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCE-VWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTC-CCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCccc-cccccceeccccccccccHhhcccc
Confidence 4578999985 3344433333358999999999997
No 78
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=87.59 E-value=0.24 Score=36.54 Aligned_cols=46 Identities=22% Similarity=0.627 Sum_probs=33.1
Q ss_pred CCcccccccccccccCCcceeccCCCcccHHHHHHHHhc----CCCCcccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQ----KNACPVCKAA 375 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~----k~sCPvCR~~ 375 (380)
..+..|.||... ++.+..-.|...||..|+..-|.. .-.||.|...
T Consensus 9 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 456789999873 333333379999999999986542 2379999764
No 79
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=86.05 E-value=0.3 Score=34.37 Aligned_cols=44 Identities=27% Similarity=0.752 Sum_probs=30.4
Q ss_pred cccccccccccCCcceeccCCCcccHHHHHHHHhcC----CCCccccc
Q 016946 331 KCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQK----NACPVCKA 374 (380)
Q Consensus 331 ~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k----~sCPvCR~ 374 (380)
.|.||...-..++.+..-.|...||..|+.+=|... -.||.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 488998764444444444799999999997655432 25999964
No 80
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=85.72 E-value=0.15 Score=37.70 Aligned_cols=48 Identities=29% Similarity=0.558 Sum_probs=34.0
Q ss_pred CCcccccccccccccCCcc-eeccCCCcccHHHHHHHHh-----cCCCCccccc
Q 016946 327 HVDKKCTICQEEYEADDEM-GKLDCGHSFHIQCIKQWLS-----QKNACPVCKA 374 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v-~~LpCgH~FH~~CI~~WL~-----~k~sCPvCR~ 374 (380)
.+...|+||...+.++..+ ..-.|...||..|+.--.. ....||.|+.
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 3467799999988654433 3337999999999864322 4557999965
No 81
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=84.51 E-value=1.1 Score=49.55 Aligned_cols=48 Identities=10% Similarity=0.003 Sum_probs=42.2
Q ss_pred CCcccccccccccccCCcceeccCC-CcccHHHHHHHHhcCCCCcccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCG-HSFHIQCIKQWLSQKNACPVCKAAVV 377 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCg-H~FH~~CI~~WL~~k~sCPvCR~~i~ 377 (380)
.++..|+|-++-+.++ +++|.| +.|-..+|..||....+||+=|.++.
T Consensus 889 P~~F~cPIs~~lM~DP---VilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~ 937 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDP---VILPASKMNIDRSTIKAHLLSDSTDPFNRMPLK 937 (968)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred cHHhCCcchhhHHhCC---eEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCC
Confidence 3467899999999988 889997 69999999999999999999887764
No 82
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=83.45 E-value=0.28 Score=37.33 Aligned_cols=50 Identities=20% Similarity=0.444 Sum_probs=33.9
Q ss_pred CcccccccccccccCCcceeccCCCcccHHHHHHHHh----cCCCCcccccccc
Q 016946 328 VDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLS----QKNACPVCKAAVV 377 (380)
Q Consensus 328 ~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~----~k~sCPvCR~~i~ 377 (380)
....|.||.........|..-.|.-.||..|+..-+. ..-.||.|...+.
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 3456999988754222333337999999999986554 2447999976543
No 83
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=82.20 E-value=1.8 Score=43.11 Aligned_cols=47 Identities=19% Similarity=0.457 Sum_probs=31.7
Q ss_pred CcccccccccccccCCcceeccCCCcccHHHHHHHHh-----cCCCCcccccccc
Q 016946 328 VDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLS-----QKNACPVCKAAVV 377 (380)
Q Consensus 328 ~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~-----~k~sCPvCR~~i~ 377 (380)
....|+|-+..+..+ ++-..|.|.-|++ +..||. ..-.||+|.+.+.
T Consensus 248 vSL~CPlS~~ri~~P--vRg~~C~HlQCFD-l~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 248 MSLQCPISYTRMKYP--SKSINCKHLQCFD-ALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp EESBCTTTSSBCSSE--EEETTCCSSCCEE-HHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred EeecCCCcccccccc--CcCCcCCCcceEC-HHHHHHHhhcCCceeCCCCCcccC
Confidence 356799888877655 5666899985544 334444 2347999988763
No 84
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=81.59 E-value=2.4 Score=42.03 Aligned_cols=48 Identities=21% Similarity=0.397 Sum_probs=31.8
Q ss_pred CcccccccccccccCCcceeccCCCc--ccHHHHHHHHhc--CCCCcccccccc
Q 016946 328 VDKKCTICQEEYEADDEMGKLDCGHS--FHIQCIKQWLSQ--KNACPVCKAAVV 377 (380)
Q Consensus 328 ~d~~CsICleef~~~e~v~~LpCgH~--FH~~CI~~WL~~--k~sCPvCR~~i~ 377 (380)
....|+|-+..+..+ ++-..|.|. |-+.-+..+..+ .-.||+|.+.+.
T Consensus 214 vSL~CPlS~~ri~~P--~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 214 VSLMCPLGKMRLTIP--CRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp EESBCTTTCSBCSSE--EEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred EeeeCCCccceeccC--CcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 356799888877665 556689998 544433333333 347999998764
No 85
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=81.53 E-value=0.26 Score=36.36 Aligned_cols=48 Identities=25% Similarity=0.654 Sum_probs=33.4
Q ss_pred CCcccccccccccccCCcceeccCCCcccHHHHHHHHhc----CCCCcccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQ----KNACPVCKAAVV 377 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~----k~sCPvCR~~i~ 377 (380)
..+..|.||.+. ++.+..-.|...||..|+.+-|.. .-.||.|.....
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 58 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL 58 (61)
T ss_dssp SSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred CCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchh
Confidence 346789999863 333334479999999999875553 226999976543
No 86
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=80.59 E-value=0.22 Score=37.29 Aligned_cols=46 Identities=22% Similarity=0.631 Sum_probs=32.9
Q ss_pred CCcccccccccccccCCcceeccCCCcccHHHHHHHHhc----CCCCcccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQ----KNACPVCKAA 375 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~----k~sCPvCR~~ 375 (380)
..+..|.||... ++.+..-.|...||..|+.+-|.. .-.||.|...
T Consensus 6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 457889999864 444444479999999999875553 2269999654
No 87
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=80.48 E-value=0.28 Score=36.38 Aligned_cols=53 Identities=30% Similarity=0.615 Sum_probs=36.1
Q ss_pred CCccccccccccccc--CCcceeccCCCcccHHHHHHHHh-------cCCCCcccccccccC
Q 016946 327 HVDKKCTICQEEYEA--DDEMGKLDCGHSFHIQCIKQWLS-------QKNACPVCKAAVVNR 379 (380)
Q Consensus 327 ~~d~~CsICleef~~--~e~v~~LpCgH~FH~~CI~~WL~-------~k~sCPvCR~~i~~~ 379 (380)
..+..|.||...... ++.+..-.|.-.||..|+.+-|. ..-.||.|......|
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~~k 65 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTK 65 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTSCC
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccccC
Confidence 346889999987543 33333337999999999987442 233799997765544
No 88
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=79.30 E-value=0.15 Score=37.44 Aligned_cols=46 Identities=20% Similarity=0.613 Sum_probs=32.7
Q ss_pred CcccccccccccccCCcceeccCCCcccHHHHHHHHhc----CCCCccccccc
Q 016946 328 VDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQ----KNACPVCKAAV 376 (380)
Q Consensus 328 ~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~----k~sCPvCR~~i 376 (380)
.+..|.||... ++.+..-.|.-.||..|+.+-|.. .-.||.|....
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 46789999874 444444479999999999875553 22699996544
No 89
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=78.43 E-value=0.44 Score=38.88 Aligned_cols=38 Identities=18% Similarity=0.493 Sum_probs=27.9
Q ss_pred CCcccccccccccccCCcceeccCCCcccHHHHHHHHh
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLS 364 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~ 364 (380)
..+..|.||.+.-...+.+.--.|+..||..||..++.
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence 45788999988633333344457999999999988765
No 90
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.29 E-value=0.2 Score=36.18 Aligned_cols=45 Identities=20% Similarity=0.620 Sum_probs=31.9
Q ss_pred CCcccccccccccccCCcceeccCCCcccHHHHHHHHhcCC----CCccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKN----ACPVCKA 374 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~----sCPvCR~ 374 (380)
..+..|.||... ++.+..-.|...||..|+.+-|.... .||.|..
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 346789999874 44444447999999999987655322 5888853
No 91
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=75.15 E-value=1.1 Score=34.06 Aligned_cols=47 Identities=23% Similarity=0.466 Sum_probs=32.1
Q ss_pred cccccccccccccCCcceeccCCCcccHHHHHHH------H---hcCCCCccccccc
Q 016946 329 DKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQW------L---SQKNACPVCKAAV 376 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~W------L---~~k~sCPvCR~~i 376 (380)
...| ||...+..+..|..-.|...||..|+.-- | .....||.|+..-
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 3456 89888764444444479999999998521 1 2577899997543
No 92
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=74.62 E-value=3.6 Score=33.59 Aligned_cols=33 Identities=27% Similarity=0.583 Sum_probs=23.4
Q ss_pred Cccccccccccc------ccCCcceeccCCCcccHHHHH
Q 016946 328 VDKKCTICQEEY------EADDEMGKLDCGHSFHIQCIK 360 (380)
Q Consensus 328 ~d~~CsICleef------~~~e~v~~LpCgH~FH~~CI~ 360 (380)
....|.||+..- ..++.+....|+..||..||.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 356899998762 222344444799999999995
No 93
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.90 E-value=0.29 Score=39.14 Aligned_cols=48 Identities=25% Similarity=0.478 Sum_probs=33.0
Q ss_pred CCcccccccccccccCCcceeccCCCcccHHHHHHHHhc----CCCCccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQ----KNACPVCKA 374 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~----k~sCPvCR~ 374 (380)
.++..|.||...-.....+..-.|...||..|+.+=|.. .-.||.|..
T Consensus 14 ~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred cCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 446789999987543333333379999999999865543 225999965
No 94
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=73.56 E-value=2 Score=32.97 Aligned_cols=46 Identities=24% Similarity=0.535 Sum_probs=31.0
Q ss_pred ccccccccccccCC-cceeccCCCcccHHHHHHHHh-----cCCCCccccccc
Q 016946 330 KKCTICQEEYEADD-EMGKLDCGHSFHIQCIKQWLS-----QKNACPVCKAAV 376 (380)
Q Consensus 330 ~~CsICleef~~~e-~v~~LpCgH~FH~~CI~~WL~-----~k~sCPvCR~~i 376 (380)
..| ||...+.... .|..-.|...||..|+.--.. ....||.|+...
T Consensus 13 ~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 13 VYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred cEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 445 9998875333 333447999999999853221 456899998653
No 95
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=73.37 E-value=0.66 Score=37.40 Aligned_cols=45 Identities=20% Similarity=0.396 Sum_probs=31.7
Q ss_pred ccccccccccccCCcceeccCCCcccHHHHHHHHh---cCCCCcccccc
Q 016946 330 KKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLS---QKNACPVCKAA 375 (380)
Q Consensus 330 ~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~---~k~sCPvCR~~ 375 (380)
..| ||-.....+..|..-.|.-.||..|+..-+. ....||.|+..
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 457 8987766664444447999999999976433 23479999743
No 96
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=72.91 E-value=0.61 Score=36.97 Aligned_cols=50 Identities=18% Similarity=0.303 Sum_probs=32.6
Q ss_pred CCccccccccccc--ccCCcceeccCCCcccHHHHHHHHh--cCCCCccccccc
Q 016946 327 HVDKKCTICQEEY--EADDEMGKLDCGHSFHIQCIKQWLS--QKNACPVCKAAV 376 (380)
Q Consensus 327 ~~d~~CsICleef--~~~e~v~~LpCgH~FH~~CI~~WL~--~k~sCPvCR~~i 376 (380)
..+..|.||...- ..++.+..-.|.-.||..|+..-+. ..-.||.|....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 4578899999763 2222222227999999999986443 233699996543
No 97
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=72.69 E-value=1.1 Score=35.86 Aligned_cols=46 Identities=24% Similarity=0.585 Sum_probs=33.1
Q ss_pred CCcccccccccccccCCcceeccCCCcccHHHHHHHHhcCC----CCcccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKN----ACPVCKAA 375 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~----sCPvCR~~ 375 (380)
..+..|.||... ++.+..-.|.-.||..|+.+=|..-. .||.|...
T Consensus 23 ~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 456789999975 44343447889999999988665322 69999753
No 98
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=71.69 E-value=1.3 Score=33.68 Aligned_cols=48 Identities=19% Similarity=0.344 Sum_probs=31.5
Q ss_pred CCccccccccccc-ccCCcc-eeccCCCcccHHHHHHHHh--cCCCCccccc
Q 016946 327 HVDKKCTICQEEY-EADDEM-GKLDCGHSFHIQCIKQWLS--QKNACPVCKA 374 (380)
Q Consensus 327 ~~d~~CsICleef-~~~e~v-~~LpCgH~FH~~CI~~WL~--~k~sCPvCR~ 374 (380)
..+..|.||...- ...+.+ ..-.|.-.||..|+..-+. ..-.||.|..
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 4578899998763 222222 2227999999999976432 2236888864
No 99
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=69.60 E-value=2.4 Score=32.19 Aligned_cols=47 Identities=26% Similarity=0.617 Sum_probs=30.0
Q ss_pred cccccccccccccCCcceecc--CC-CcccHHHHHHHHhc----CCCCcccccccccC
Q 016946 329 DKKCTICQEEYEADDEMGKLD--CG-HSFHIQCIKQWLSQ----KNACPVCKAAVVNR 379 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~Lp--Cg-H~FH~~CI~~WL~~----k~sCPvCR~~i~~~ 379 (380)
...| ||..... ++.|..=. |. ..||..||. |.. +-.||.|......|
T Consensus 16 ~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~k~ 69 (71)
T 1wen_A 16 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESGPS 69 (71)
T ss_dssp CCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSSSC
T ss_pred CCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcccccc
Confidence 4557 8988643 43332225 76 699999997 442 33799998765433
No 100
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=67.22 E-value=4.9 Score=34.69 Aligned_cols=46 Identities=24% Similarity=0.533 Sum_probs=32.7
Q ss_pred CCcccccccccccccCCcceeccCCCcccHHHHHHHHh-----------cCCCCcccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLS-----------QKNACPVCKAA 375 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~-----------~k~sCPvCR~~ 375 (380)
..++.|.||.+. ++.+-.-.|-..||..||.+-|. ..-.||+|...
T Consensus 61 g~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 61 GMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp SCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 346889999985 33333337999999999997663 12269999753
No 101
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=67.12 E-value=1.5 Score=31.12 Aligned_cols=43 Identities=19% Similarity=0.379 Sum_probs=29.5
Q ss_pred cccccccccccCCccee-c-cCCCcccHHHHHHHH----hcCCCCcccc
Q 016946 331 KCTICQEEYEADDEMGK-L-DCGHSFHIQCIKQWL----SQKNACPVCK 373 (380)
Q Consensus 331 ~CsICleef~~~e~v~~-L-pCgH~FH~~CI~~WL----~~k~sCPvCR 373 (380)
.|.||...+.+++.++. - .|.--||..|+.--. ..+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 47899888865544433 3 588999999975321 2667899885
No 102
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=65.06 E-value=10 Score=29.94 Aligned_cols=38 Identities=24% Similarity=0.366 Sum_probs=28.9
Q ss_pred CCcccccccccccccCCcceec-cCCCcccHHHHHHHHh
Q 016946 327 HVDKKCTICQEEYEADDEMGKL-DCGHSFHIQCIKQWLS 364 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~L-pCgH~FH~~CI~~WL~ 364 (380)
.....|.+|.+.+++..-|..- .=.|.||+.|-+..++
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk 51 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIK 51 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHH
Confidence 3457899999999887443222 2469999999999887
No 103
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=64.78 E-value=2.3 Score=32.68 Aligned_cols=47 Identities=19% Similarity=0.473 Sum_probs=32.2
Q ss_pred cccccccccccccCCcceec--cCCCcccHHHHHHHH---------hcCCCCccccccc
Q 016946 329 DKKCTICQEEYEADDEMGKL--DCGHSFHIQCIKQWL---------SQKNACPVCKAAV 376 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~L--pCgH~FH~~CI~~WL---------~~k~sCPvCR~~i 376 (380)
...| ||-.....+..|..- .|...||..|+.--- ..+..||.|+...
T Consensus 16 ~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 4557 898875555555555 699999999985321 1356899997643
No 104
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=64.12 E-value=4.6 Score=30.11 Aligned_cols=47 Identities=23% Similarity=0.408 Sum_probs=30.9
Q ss_pred CCcccccccccccccCCcce-ec-cCCCcccHHHHHHHHh----------cCCCCcccc
Q 016946 327 HVDKKCTICQEEYEADDEMG-KL-DCGHSFHIQCIKQWLS----------QKNACPVCK 373 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~-~L-pCgH~FH~~CI~~WL~----------~k~sCPvCR 373 (380)
.....|.+|...|...+.++ .- .|.-.||..|+.---. ..-.||.|.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 44678999999987664443 33 6999999999743211 144688885
No 105
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=63.69 E-value=3 Score=33.37 Aligned_cols=44 Identities=27% Similarity=0.693 Sum_probs=29.1
Q ss_pred cccccccccccccCCcceecc--CC-CcccHHHHHHHHhc----CCCCccccccc
Q 016946 329 DKKCTICQEEYEADDEMGKLD--CG-HSFHIQCIKQWLSQ----KNACPVCKAAV 376 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~Lp--Cg-H~FH~~CI~~WL~~----k~sCPvCR~~i 376 (380)
...| ||..... ++.|..=. |. ..||..||. |.. +-.||.|+...
T Consensus 36 ~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 36 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 3456 9988653 44433335 66 689999997 432 34799997654
No 106
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=62.80 E-value=1.8 Score=37.70 Aligned_cols=46 Identities=22% Similarity=0.587 Sum_probs=31.4
Q ss_pred CcccccccccccccCC-cceeccCCCcccHHHHHHHH-----hcCCCCccccc
Q 016946 328 VDKKCTICQEEYEADD-EMGKLDCGHSFHIQCIKQWL-----SQKNACPVCKA 374 (380)
Q Consensus 328 ~d~~CsICleef~~~e-~v~~LpCgH~FH~~CI~~WL-----~~k~sCPvCR~ 374 (380)
....| ||...+..+. .+..-.|...||..|+.--. ...-.||.|+.
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 35678 9998875433 33344799999999995321 13558999974
No 107
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=62.35 E-value=1 Score=35.57 Aligned_cols=48 Identities=19% Similarity=0.475 Sum_probs=32.0
Q ss_pred Cccccccccccccc--CCcceeccCCCcccHHHHHHHHh--------cCCCCcccccc
Q 016946 328 VDKKCTICQEEYEA--DDEMGKLDCGHSFHIQCIKQWLS--------QKNACPVCKAA 375 (380)
Q Consensus 328 ~d~~CsICleef~~--~e~v~~LpCgH~FH~~CI~~WL~--------~k~sCPvCR~~ 375 (380)
.+..|.||...-.. ++.+..=.|...||..|+.+-|. ..-.|+.|...
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~ 72 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQ 72 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHH
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccch
Confidence 35789999986432 22222227999999999987654 22369999653
No 108
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=61.17 E-value=1.9 Score=35.28 Aligned_cols=44 Identities=25% Similarity=0.681 Sum_probs=29.3
Q ss_pred ccccccccc-ccCCcceeccCCCcccHHHHHHHHhcC----CCCccccc
Q 016946 331 KCTICQEEY-EADDEMGKLDCGHSFHIQCIKQWLSQK----NACPVCKA 374 (380)
Q Consensus 331 ~CsICleef-~~~e~v~~LpCgH~FH~~CI~~WL~~k----~sCPvCR~ 374 (380)
.|.||...- ..++.+..-.|...||..|+.+-|..- =.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 688888642 223223333799999999998766532 26999974
No 109
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=60.60 E-value=1.1 Score=34.81 Aligned_cols=44 Identities=30% Similarity=0.708 Sum_probs=26.2
Q ss_pred cccccccccccCCcceeccCCCcccHHHHHHHHhcC-----CCCccccc
Q 016946 331 KCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQK-----NACPVCKA 374 (380)
Q Consensus 331 ~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k-----~sCPvCR~ 374 (380)
.|.||...-..+..+..-.|...||..|+.+-|... =.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 355555442222112222689999999999766521 36999975
No 110
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.01 E-value=2.1 Score=33.10 Aligned_cols=45 Identities=27% Similarity=0.632 Sum_probs=29.7
Q ss_pred ccccccccccccCCcceeccCCCcccHHHHHHHHhc-----CCCCccccc
Q 016946 330 KKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQ-----KNACPVCKA 374 (380)
Q Consensus 330 ~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~-----k~sCPvCR~ 374 (380)
..|.||...-..++.+..-.|...||..|+.+=|.. .=.||.|..
T Consensus 27 c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 478888864333333333379999999999865542 236999864
No 111
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=55.80 E-value=1.6 Score=32.86 Aligned_cols=45 Identities=20% Similarity=0.496 Sum_probs=30.3
Q ss_pred cccccccccccccCCcceeccCCCcccHHHHHHHHh---cCCCCccccc
Q 016946 329 DKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLS---QKNACPVCKA 374 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~---~k~sCPvCR~ 374 (380)
...| ||...+.....|..-.|...||..|+.--.. ....||.|+.
T Consensus 19 ~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 19 LVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp CCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred ceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 4567 9988765333344447999999999864321 3457999964
No 112
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=53.02 E-value=2.6 Score=39.14 Aligned_cols=46 Identities=28% Similarity=0.676 Sum_probs=27.3
Q ss_pred ccccccccccccCCcceeccCCCcccHHHHHHHHhc-----CCCCcccccc
Q 016946 330 KKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQ-----KNACPVCKAA 375 (380)
Q Consensus 330 ~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~-----k~sCPvCR~~ 375 (380)
..|.||...-..++.+..-.|...||..|+.+=|.. .=.||.|...
T Consensus 175 c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 468888764333333333379999999999976652 2369999753
No 113
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=52.26 E-value=5.8 Score=32.21 Aligned_cols=47 Identities=26% Similarity=0.442 Sum_probs=32.7
Q ss_pred cccccccccccccCCcce-ec-cCCCcccHHHHHHHH----------hcCCCCcccccc
Q 016946 329 DKKCTICQEEYEADDEMG-KL-DCGHSFHIQCIKQWL----------SQKNACPVCKAA 375 (380)
Q Consensus 329 d~~CsICleef~~~e~v~-~L-pCgH~FH~~CI~~WL----------~~k~sCPvCR~~ 375 (380)
...|.||...|.+.+.++ .- .|...||..|+.--. ..+..||.|+..
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKT 61 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCc
Confidence 467999999986654433 33 699999999985221 034579999754
No 114
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=51.82 E-value=1.6 Score=32.89 Aligned_cols=46 Identities=24% Similarity=0.437 Sum_probs=31.0
Q ss_pred cccccccccccccCCcc-eeccCCCcccHHHHHHHH----hcCCCCcccccc
Q 016946 329 DKKCTICQEEYEADDEM-GKLDCGHSFHIQCIKQWL----SQKNACPVCKAA 375 (380)
Q Consensus 329 d~~CsICleef~~~e~v-~~LpCgH~FH~~CI~~WL----~~k~sCPvCR~~ 375 (380)
...| ||...+..++.+ ..-.|...||..|+.--. .....||.|+..
T Consensus 16 ~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred ceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 3558 798876655433 333799999999986432 245579999653
No 115
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=51.72 E-value=7.1 Score=31.92 Aligned_cols=33 Identities=24% Similarity=0.518 Sum_probs=22.9
Q ss_pred cccccccccccc-------CCcceeccCCCcccHHHHHHH
Q 016946 330 KKCTICQEEYEA-------DDEMGKLDCGHSFHIQCIKQW 362 (380)
Q Consensus 330 ~~CsICleef~~-------~e~v~~LpCgH~FH~~CI~~W 362 (380)
..|.||+..-.. ++.+....|+..||..||..+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 469999876411 233334479999999999765
No 116
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=51.45 E-value=2.4 Score=32.02 Aligned_cols=45 Identities=29% Similarity=0.711 Sum_probs=27.9
Q ss_pred cccccccccccCCcceeccCCCcccHHHHHHHHhc-----CCCCcccccc
Q 016946 331 KCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQ-----KNACPVCKAA 375 (380)
Q Consensus 331 ~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~-----k~sCPvCR~~ 375 (380)
.|.||...-..++.+.--.|...||..||.+=|.. .=.||.|...
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 45677654222222222269999999999865552 3369999753
No 117
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=50.36 E-value=28 Score=27.86 Aligned_cols=49 Identities=22% Similarity=0.480 Sum_probs=34.8
Q ss_pred CcccccccccccccC---Ccc-eeccCCCcccHHHHHHHHh-cCCCCccccccc
Q 016946 328 VDKKCTICQEEYEAD---DEM-GKLDCGHSFHIQCIKQWLS-QKNACPVCKAAV 376 (380)
Q Consensus 328 ~d~~CsICleef~~~---e~v-~~LpCgH~FH~~CI~~WL~-~k~sCPvCR~~i 376 (380)
....|.||-++.... +.. ..--|+--.|..|+.--.. .+..||-|++..
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrY 68 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRY 68 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcc
Confidence 357899999985432 221 2226898999999865443 677999999875
No 118
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=50.04 E-value=1 Score=37.10 Aligned_cols=46 Identities=20% Similarity=0.561 Sum_probs=30.8
Q ss_pred cccccccccccCCcceeccCCCcccHHHHHHHHhcC----CCCccccccc
Q 016946 331 KCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQK----NACPVCKAAV 376 (380)
Q Consensus 331 ~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k----~sCPvCR~~i 376 (380)
.|.||...-..++.+..-.|...||..|+.+=|... -.||.|...+
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchh
Confidence 688887754344333333799999999998655432 2599886543
No 119
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=47.50 E-value=2.2 Score=34.56 Aligned_cols=45 Identities=18% Similarity=0.497 Sum_probs=28.0
Q ss_pred cccccccccccCCcceeccCCCcccHHHHHHHHhc----CCCCcccccc
Q 016946 331 KCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQ----KNACPVCKAA 375 (380)
Q Consensus 331 ~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~----k~sCPvCR~~ 375 (380)
.|.||...-.....+..-.|...||..|+.+-|.. .-.||.|..-
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 46677665332222222279999999999875553 2368888553
No 120
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=46.54 E-value=12 Score=32.60 Aligned_cols=46 Identities=17% Similarity=0.476 Sum_probs=30.1
Q ss_pred Cccccccccccccc--CCcceeccCCCcccHHHHHHHHhcCC--CCccccc
Q 016946 328 VDKKCTICQEEYEA--DDEMGKLDCGHSFHIQCIKQWLSQKN--ACPVCKA 374 (380)
Q Consensus 328 ~d~~CsICleef~~--~e~v~~LpCgH~FH~~CI~~WL~~k~--sCPvCR~ 374 (380)
.+..|.+|+..|.- +-......|.|.+|..|- .|+.... .|-+|..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 57899999998643 333444489999999996 2332211 3666643
No 121
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=46.10 E-value=8 Score=28.52 Aligned_cols=43 Identities=23% Similarity=0.458 Sum_probs=28.7
Q ss_pred ccccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCccc
Q 016946 330 KKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVC 372 (380)
Q Consensus 330 ~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvC 372 (380)
..|-.|+..|..........|++.|+.+|=.---+.-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4699999998643112234799999999932222345579988
No 122
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=45.92 E-value=14 Score=31.33 Aligned_cols=34 Identities=18% Similarity=0.397 Sum_probs=24.5
Q ss_pred CCccccccccccccc--CCcceeccCCCcccHHHHH
Q 016946 327 HVDKKCTICQEEYEA--DDEMGKLDCGHSFHIQCIK 360 (380)
Q Consensus 327 ~~d~~CsICleef~~--~e~v~~LpCgH~FH~~CI~ 360 (380)
..+..|.+|...|.- +-......|.|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 457889999999842 2223344799999999853
No 123
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=45.42 E-value=10 Score=31.64 Aligned_cols=35 Identities=17% Similarity=0.473 Sum_probs=25.0
Q ss_pred CcccccccccccccCCcceec-cCCCcccHHHHHHH
Q 016946 328 VDKKCTICQEEYEADDEMGKL-DCGHSFHIQCIKQW 362 (380)
Q Consensus 328 ~d~~CsICleef~~~e~v~~L-pCgH~FH~~CI~~W 362 (380)
....|.+|...|..-..-..- .||++||..|....
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 346899999999754222222 69999999997654
No 124
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=45.34 E-value=6.5 Score=29.77 Aligned_cols=31 Identities=23% Similarity=0.554 Sum_probs=24.4
Q ss_pred CcccccccccccccCCcceeccC-CCcccHHHHHHH
Q 016946 328 VDKKCTICQEEYEADDEMGKLDC-GHSFHIQCIKQW 362 (380)
Q Consensus 328 ~d~~CsICleef~~~e~v~~LpC-gH~FH~~CI~~W 362 (380)
...-|.||.++- .++.+.| +-+||..|..+.
T Consensus 7 e~pWC~ICneDA----tlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 7 GLPWCCICNEDA----TLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCSSCTTTCSCC----CEEETTTTSEEECSSHHHHH
T ss_pred CCCeeEEeCCCC----eEEecCCCCceehHHHHHHH
Confidence 345699999982 3577889 889999998775
No 125
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=44.98 E-value=2.5 Score=35.54 Aligned_cols=47 Identities=21% Similarity=0.566 Sum_probs=28.4
Q ss_pred CCcccccccccccccCCcce-eccCCCcccHHHHHHHHhcCCCCcccc
Q 016946 327 HVDKKCTICQEEYEADDEMG-KLDCGHSFHIQCIKQWLSQKNACPVCK 373 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~-~LpCgH~FH~~CI~~WL~~k~sCPvCR 373 (380)
.....|.+|...|..-.... .-.||.+||..|....+.....|-.|-
T Consensus 17 ~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~ 64 (120)
T 1y02_A 17 GLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQ 64 (120)
T ss_dssp ---CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHH
T ss_pred cccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHH
Confidence 44568999999987532212 226999999999766655455666663
No 126
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=44.90 E-value=12 Score=28.84 Aligned_cols=36 Identities=14% Similarity=0.322 Sum_probs=25.9
Q ss_pred CCcccccccccccccCCcceec-cCCCcccHHHHHHH
Q 016946 327 HVDKKCTICQEEYEADDEMGKL-DCGHSFHIQCIKQW 362 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~L-pCgH~FH~~CI~~W 362 (380)
.+...|.+|...|..-..-..- .||++||..|....
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 3457899999999764222222 69999999997654
No 127
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=43.52 E-value=12 Score=29.37 Aligned_cols=36 Identities=19% Similarity=0.371 Sum_probs=25.7
Q ss_pred CcccccccccccccCCcce-eccCCCcccHHHHHHHH
Q 016946 328 VDKKCTICQEEYEADDEMG-KLDCGHSFHIQCIKQWL 363 (380)
Q Consensus 328 ~d~~CsICleef~~~e~v~-~LpCgH~FH~~CI~~WL 363 (380)
+...|.+|...|..-.... .-.||++||..|...++
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 3567999999987542222 22699999999977653
No 128
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=43.21 E-value=3.8 Score=29.93 Aligned_cols=42 Identities=29% Similarity=0.720 Sum_probs=26.8
Q ss_pred cccccccccccccCCcceecc--CC-CcccHHHHHHHHhc----CCCCccccc
Q 016946 329 DKKCTICQEEYEADDEMGKLD--CG-HSFHIQCIKQWLSQ----KNACPVCKA 374 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~Lp--Cg-H~FH~~CI~~WL~~----k~sCPvCR~ 374 (380)
..-| ||.... .++.+..=. |. ..||..|+. |.. +-.||.|+.
T Consensus 9 ~~yC-~C~~~~-~g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVS-YGEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEE-ECCCCC-CCCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 3456 998864 243332225 76 699999997 442 337999964
No 129
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=42.81 E-value=9.3 Score=31.31 Aligned_cols=45 Identities=22% Similarity=0.531 Sum_probs=28.3
Q ss_pred CCcccccccccccccCCcceec--cCCCcccHHHHHHHHhcC----CCCccccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKL--DCGHSFHIQCIKQWLSQK----NACPVCKAAV 376 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~L--pCgH~FH~~CI~~WL~~k----~sCPvCR~~i 376 (380)
..++.|.+|.+. ++.+..- .|-..||..||. |... -.||-|.-.+
T Consensus 13 ~~~~~C~~C~~~---G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~ 63 (107)
T 4gne_A 13 MHEDYCFQCGDG---GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDE 63 (107)
T ss_dssp SSCSSCTTTCCC---SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTT
T ss_pred CCCCCCCcCCCC---CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCc
Confidence 456789999842 3322222 388999999997 5432 2588665443
No 130
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=42.28 E-value=3.8 Score=29.94 Aligned_cols=42 Identities=29% Similarity=0.733 Sum_probs=26.0
Q ss_pred cccccccccccccCCcceecc--CC-CcccHHHHHHHHhc----CCCCccccc
Q 016946 329 DKKCTICQEEYEADDEMGKLD--CG-HSFHIQCIKQWLSQ----KNACPVCKA 374 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~Lp--Cg-H~FH~~CI~~WL~~----k~sCPvCR~ 374 (380)
...| ||..... ++.+..=. |. ..||..||. |.. +-.||.|..
T Consensus 10 ~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 3456 9988642 42222224 65 689999997 442 336999864
No 131
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=41.78 E-value=12 Score=28.69 Aligned_cols=35 Identities=23% Similarity=0.574 Sum_probs=24.8
Q ss_pred CcccccccccccccCCccee-ccCCCcccHHHHHHH
Q 016946 328 VDKKCTICQEEYEADDEMGK-LDCGHSFHIQCIKQW 362 (380)
Q Consensus 328 ~d~~CsICleef~~~e~v~~-LpCgH~FH~~CI~~W 362 (380)
+...|.+|...|..-..-.. -.||.+||..|....
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 35689999999975422112 269999999997654
No 132
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=41.55 E-value=20 Score=30.33 Aligned_cols=46 Identities=24% Similarity=0.541 Sum_probs=30.8
Q ss_pred CCcccccccccccccCCcceeccCCCcccHHHHHHHH------h-----cCCCCcccccc
Q 016946 327 HVDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWL------S-----QKNACPVCKAA 375 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL------~-----~k~sCPvCR~~ 375 (380)
..++.|.||-+. ++.+-.=.|-..||..||.+-| + ..=.|++|.-.
T Consensus 55 g~~~~C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 55 GMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp SCBSSCTTTCCC---SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCcCeecCCC---CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 346779999975 3222222689999999999752 1 12379999654
No 133
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.40 E-value=13 Score=28.64 Aligned_cols=36 Identities=22% Similarity=0.438 Sum_probs=25.0
Q ss_pred CCcccccccccccccCCccee-ccCCCcccHHHHHHH
Q 016946 327 HVDKKCTICQEEYEADDEMGK-LDCGHSFHIQCIKQW 362 (380)
Q Consensus 327 ~~d~~CsICleef~~~e~v~~-LpCgH~FH~~CI~~W 362 (380)
.....|.+|...|..-..-.. -.||.+||..|....
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 345689999999965422112 269999999997543
No 134
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=41.04 E-value=5.7 Score=39.01 Aligned_cols=50 Identities=14% Similarity=0.290 Sum_probs=0.0
Q ss_pred CcccccccccccccCCc-ceeccCCCcccHHHHHHHHh-------cCCCCcccccccc
Q 016946 328 VDKKCTICQEEYEADDE-MGKLDCGHSFHIQCIKQWLS-------QKNACPVCKAAVV 377 (380)
Q Consensus 328 ~d~~CsICleef~~~e~-v~~LpCgH~FH~~CI~~WL~-------~k~sCPvCR~~i~ 377 (380)
....|.+|...|..-.. -..-.||++||..|...++. ....|-.|-..+.
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l~ 431 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGELK 431 (434)
T ss_dssp ----------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHHH
Confidence 35689999999864321 12236999999999987653 1236777755443
No 135
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=38.90 E-value=3.9 Score=28.84 Aligned_cols=42 Identities=19% Similarity=0.480 Sum_probs=27.5
Q ss_pred cccccccccCCcceeccCCCcccHHHHHHHHh---cCCCCccccc
Q 016946 333 TICQEEYEADDEMGKLDCGHSFHIQCIKQWLS---QKNACPVCKA 374 (380)
Q Consensus 333 sICleef~~~e~v~~LpCgH~FH~~CI~~WL~---~k~sCPvCR~ 374 (380)
.||...+..+..+..-.|..-||..|+.---. ....||.|+.
T Consensus 7 C~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 7 CFCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp STTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EEeCCcCCCCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 47877655333343447999999999864322 4557999864
No 136
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=38.85 E-value=2.9 Score=31.23 Aligned_cols=43 Identities=23% Similarity=0.490 Sum_probs=27.0
Q ss_pred ccccccccccccCCcceec---cCCCcccHHHHHHHH---h-----cCCCCccccc
Q 016946 330 KKCTICQEEYEADDEMGKL---DCGHSFHIQCIKQWL---S-----QKNACPVCKA 374 (380)
Q Consensus 330 ~~CsICleef~~~e~v~~L---pCgH~FH~~CI~~WL---~-----~k~sCPvCR~ 374 (380)
..| ||-.....+. ++.- .|...||..|+.--- . .+..||.||.
T Consensus 11 v~C-~C~~~~~~g~-mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVNDS-MIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCSC-EEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCCC-EEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 446 8976655553 3333 388999999973210 0 2457999974
No 137
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=38.72 E-value=9.8 Score=28.05 Aligned_cols=43 Identities=14% Similarity=0.139 Sum_probs=23.9
Q ss_pred ccccccccccccCCcceeccCCCcccH-HHHHHHHhcCCCCccccccc
Q 016946 330 KKCTICQEEYEADDEMGKLDCGHSFHI-QCIKQWLSQKNACPVCKAAV 376 (380)
Q Consensus 330 ~~CsICleef~~~e~v~~LpCgH~FH~-~CI~~WL~~k~sCPvCR~~i 376 (380)
..|..|...+..+. ....=+..||. .|..+. ....|-.|...+
T Consensus 28 F~C~~C~~~L~~~~--~~~~~g~~yC~~~cy~~~--f~~~C~~C~~~~ 71 (76)
T 1iml_A 28 LKCEKCGKTLTSGG--HAEHEGKPYCNHPCYSAM--FGPKGFGRGGAE 71 (76)
T ss_dssp CBCTTTCCBCCTTT--EEEETTEEEETTTHHHHH--SSCCCSSCCCSS
T ss_pred CCccccCccCCCCc--eECcCCeEeeCHHHHHHH--hCccCCCcCCce
Confidence 46777777665542 22334566776 576543 334577775443
No 138
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=37.44 E-value=9.6 Score=28.79 Aligned_cols=46 Identities=20% Similarity=0.423 Sum_probs=30.1
Q ss_pred ccccccccccccCCc-ceeccCCCcccHHHHHHHHh-----cCCCCcccccc
Q 016946 330 KKCTICQEEYEADDE-MGKLDCGHSFHIQCIKQWLS-----QKNACPVCKAA 375 (380)
Q Consensus 330 ~~CsICleef~~~e~-v~~LpCgH~FH~~CI~~WL~-----~k~sCPvCR~~ 375 (380)
..-.||...+..+.. |..-.|.--||..|+.---. ....||.|+..
T Consensus 10 ~~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 10 PVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp CEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred eeEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 344589887654333 33337999999999954321 34579999653
No 139
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.16 E-value=14 Score=27.22 Aligned_cols=40 Identities=20% Similarity=0.558 Sum_probs=27.3
Q ss_pred cccccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCccccccccc
Q 016946 329 DKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVVN 378 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~~ 378 (380)
...|..|-+.+..++.+. .-+..||..| ..|-.|+..|..
T Consensus 9 ~~~C~~C~~~I~~~~~v~--a~~~~~H~~C--------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVS--SLGKDWHKFC--------LKCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEE--ETTEEEETTT--------CBCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEE--ECCeEeeCCC--------CCCCCCCCccCC
Confidence 467899988877665433 4577888776 357777776643
No 140
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=35.30 E-value=19 Score=27.05 Aligned_cols=34 Identities=18% Similarity=0.432 Sum_probs=23.9
Q ss_pred cccccccccccccCCccee-ccCCCcccHHHHHHH
Q 016946 329 DKKCTICQEEYEADDEMGK-LDCGHSFHIQCIKQW 362 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~-LpCgH~FH~~CI~~W 362 (380)
+..|.+|...|..-..-.. -.||.+||..|....
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 4689999999875421111 269999999997543
No 141
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=34.62 E-value=14 Score=33.34 Aligned_cols=35 Identities=23% Similarity=0.543 Sum_probs=25.1
Q ss_pred CcccccccccccccCCcceec-cCCCcccHHHHHHH
Q 016946 328 VDKKCTICQEEYEADDEMGKL-DCGHSFHIQCIKQW 362 (380)
Q Consensus 328 ~d~~CsICleef~~~e~v~~L-pCgH~FH~~CI~~W 362 (380)
++..|.+|...|..-..-..- .||++||..|....
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 357899999998754222222 69999999997654
No 142
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.30 E-value=30 Score=25.89 Aligned_cols=40 Identities=20% Similarity=0.565 Sum_probs=28.4
Q ss_pred CcccccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCcccccccc
Q 016946 328 VDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVV 377 (380)
Q Consensus 328 ~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~ 377 (380)
....|.-|-..+..++.+.. -+..||..| ..|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a--~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA--LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE--TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE--CCccccccc--------CCcCcCCCCcC
Confidence 35689999998876655443 467888777 45788877664
No 143
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=34.26 E-value=8.5 Score=24.29 Aligned_cols=13 Identities=23% Similarity=0.677 Sum_probs=9.1
Q ss_pred CCCCccccccccc
Q 016946 366 KNACPVCKAAVVN 378 (380)
Q Consensus 366 k~sCPvCR~~i~~ 378 (380)
+..||+|+..+.+
T Consensus 3 k~~CpvCk~q~Pd 15 (28)
T 2jvx_A 3 DFCCPKCQYQAPD 15 (28)
T ss_dssp CEECTTSSCEESS
T ss_pred cccCccccccCcC
Confidence 4568888877654
No 144
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=34.13 E-value=18 Score=28.26 Aligned_cols=35 Identities=17% Similarity=0.449 Sum_probs=24.8
Q ss_pred CcccccccccccccCCccee-ccCCCcccHHHHHHH
Q 016946 328 VDKKCTICQEEYEADDEMGK-LDCGHSFHIQCIKQW 362 (380)
Q Consensus 328 ~d~~CsICleef~~~e~v~~-LpCgH~FH~~CI~~W 362 (380)
+...|.+|...|..-..-.. -.||++||..|....
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 45689999999875422222 269999999997653
No 145
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=33.71 E-value=15 Score=33.46 Aligned_cols=35 Identities=17% Similarity=0.478 Sum_probs=25.4
Q ss_pred CcccccccccccccCCcce-eccCCCcccHHHHHHH
Q 016946 328 VDKKCTICQEEYEADDEMG-KLDCGHSFHIQCIKQW 362 (380)
Q Consensus 328 ~d~~CsICleef~~~e~v~-~LpCgH~FH~~CI~~W 362 (380)
++..|.+|...|..-..-. .-.||++||..|...+
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 4568999999997542222 2269999999997654
No 146
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.30 E-value=19 Score=27.14 Aligned_cols=41 Identities=27% Similarity=0.597 Sum_probs=28.1
Q ss_pred CcccccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCccccccccc
Q 016946 328 VDKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVVN 378 (380)
Q Consensus 328 ~d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~~ 378 (380)
....|..|-..+...+.+. .-+..||..| ..|-.|+..|..
T Consensus 14 ~~~~C~~C~~~I~~~e~v~--a~~~~wH~~C--------F~C~~C~~~L~~ 54 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC--VNGHFFHRSC--------FRCHTCEATLWP 54 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC--BTTBCCBTTT--------CBCSSSCCBCCT
T ss_pred CCCCCcccCCCcccceEEE--ECCCeeCCCc--------CEEcCCCCCcCC
Confidence 3568999999876655543 3467888877 457777766543
No 147
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=30.86 E-value=7.8 Score=28.53 Aligned_cols=42 Identities=29% Similarity=0.751 Sum_probs=26.4
Q ss_pred cccccccccccccCCcceecc--CC-CcccHHHHHHHHh----cCCCCccccc
Q 016946 329 DKKCTICQEEYEADDEMGKLD--CG-HSFHIQCIKQWLS----QKNACPVCKA 374 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~Lp--Cg-H~FH~~CI~~WL~----~k~sCPvCR~ 374 (380)
..-| ||.... .++.+..=. |. ..||..||. |. .+-.||.|+.
T Consensus 11 ~~yC-~C~~~~-~g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYC-LCNQVS-YGEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CcEE-ECCCCC-CCCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 3456 998863 243222225 55 899999997 33 2347999964
No 148
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=30.80 E-value=11 Score=30.90 Aligned_cols=28 Identities=25% Similarity=0.604 Sum_probs=18.5
Q ss_pred eeccCCCcccHHHHHHHHhcCCCCccccccccc
Q 016946 346 GKLDCGHSFHIQCIKQWLSQKNACPVCKAAVVN 378 (380)
Q Consensus 346 ~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~~ 378 (380)
....||+.|. .-+.....||.|+..-+.
T Consensus 69 ~C~~CG~~F~-----~~~~kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 69 QCRKCGFVFK-----AEINIPSRCPKCKSEWIE 96 (105)
T ss_dssp BBTTTCCBCC-----CCSSCCSSCSSSCCCCBC
T ss_pred ChhhCcCeec-----ccCCCCCCCcCCCCCccC
Confidence 4667999991 112344689999986543
No 149
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.88 E-value=27 Score=25.10 Aligned_cols=39 Identities=21% Similarity=0.486 Sum_probs=21.8
Q ss_pred ccccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCcccccccc
Q 016946 330 KKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVV 377 (380)
Q Consensus 330 ~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~ 377 (380)
..|..|-..+...+.+ ...-+..||..| ..|-.|...|.
T Consensus 6 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1wyh_A 6 SGCSACGETVMPGSRK-LEYGGQTWHEHC--------FLCSGCEQPLG 44 (72)
T ss_dssp CBCSSSCCBCCSSSCE-ECSTTCCEETTT--------CBCTTTCCBTT
T ss_pred CCCccCCCccccCccE-EEECccccCccc--------CeECCCCCcCC
Confidence 4677777766643222 223466677665 34666665554
No 150
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.68 E-value=34 Score=25.29 Aligned_cols=41 Identities=27% Similarity=0.502 Sum_probs=26.6
Q ss_pred cccccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCccccccccc
Q 016946 329 DKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVVN 378 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~~ 378 (380)
...|..|-..+...+.+ ...-+..||..| ..|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~~~~~-~~a~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQN-VEYKGTVWHKDC--------FTCSNCKQVIGT 55 (82)
T ss_dssp SCBCSSSCCBCCSSSCE-EECSSCEEETTT--------CCCSSSCCCCTT
T ss_pred CCcCccCCcccccCceE-EEECcccccccc--------CchhhCCCccCC
Confidence 35788888887765443 223467788776 357777776643
No 151
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=27.19 E-value=11 Score=30.08 Aligned_cols=42 Identities=24% Similarity=0.464 Sum_probs=26.0
Q ss_pred cccccccccccccCCcceeccCC---CcccHHHHHHHHh----cCCCCcc-ccc
Q 016946 329 DKKCTICQEEYEADDEMGKLDCG---HSFHIQCIKQWLS----QKNACPV-CKA 374 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~LpCg---H~FH~~CI~~WL~----~k~sCPv-CR~ 374 (380)
..-| ||..... ++.|..=.|. ..||..||. |. ..-.||. |+.
T Consensus 26 ~~yC-iC~~~~~-g~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 26 EVYC-FCRNVSY-GPMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp SCCS-TTTCCCS-SSEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CcEE-EeCCCCC-CCEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 3456 9987532 4433333554 789999986 33 2347999 864
No 152
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.28 E-value=34 Score=24.50 Aligned_cols=39 Identities=21% Similarity=0.456 Sum_probs=22.1
Q ss_pred ccccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCcccccccc
Q 016946 330 KKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVV 377 (380)
Q Consensus 330 ~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~ 377 (380)
..|..|-..+...+.+ ...-+..||..| ..|-.|+..|.
T Consensus 6 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRK-MEYKGSSWHETC--------FICHRCQQPIG 44 (72)
T ss_dssp CCBSSSCCCCCSSSCE-EEETTEEEETTT--------TCCSSSCCCCC
T ss_pred CCCccCCCcccCCceE-EEECcCeecccC--------CcccccCCccC
Confidence 4677777776654332 223455677665 34666666554
No 153
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=26.02 E-value=26 Score=28.41 Aligned_cols=32 Identities=28% Similarity=0.502 Sum_probs=13.8
Q ss_pred cccccccccccCCcceeccCCCcccHHHHHHHH
Q 016946 331 KCTICQEEYEADDEMGKLDCGHSFHIQCIKQWL 363 (380)
Q Consensus 331 ~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL 363 (380)
.|.+|-..+..++.. .+.=+..||..|..+.+
T Consensus 38 ~C~~C~~~L~~g~~f-~~~~g~~yC~~cy~~~~ 69 (123)
T 2l3k_A 38 KCAACQKHFSVGDRY-LLINSDIVCEQDIYEWT 69 (123)
T ss_dssp BCTTTCCBCCTTCEE-EECSSSEEEGGGHHHHH
T ss_pred ccccCCCCCCCCCcE-EeeCCEEEcHHHhHHHh
Confidence 455555544333221 22234455555555444
No 154
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.95 E-value=38 Score=24.32 Aligned_cols=32 Identities=13% Similarity=0.230 Sum_probs=14.2
Q ss_pred cccccccccccCCcceeccCCCcccHHHHHHHHh
Q 016946 331 KCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLS 364 (380)
Q Consensus 331 ~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~ 364 (380)
.|..|...+... .....=+..||..|..+.+.
T Consensus 35 ~C~~C~~~L~~~--~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 35 VCSTCRAQLRGQ--HFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp BCSSSCCBCTTS--CEEESSSCEEEHHHHHHHHH
T ss_pred cccccCCcCCcC--cCEeeCCeEECHHHHHHHHc
Confidence 455555554211 11223345555555555443
No 155
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=25.87 E-value=19 Score=22.59 Aligned_cols=28 Identities=14% Similarity=0.424 Sum_probs=19.5
Q ss_pred cccccccccccccCCcceeccCCCcccHHH
Q 016946 329 DKKCTICQEEYEADDEMGKLDCGHSFHIQC 358 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~LpCgH~FH~~C 358 (380)
.+.|+.|-...-..|.+. .=|..||..|
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~--~~g~~~Hk~C 30 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVN--CLDKFWHKAC 30 (31)
T ss_dssp CCBCSSSCSBCCGGGCCC--SSSSCCCGGG
T ss_pred CCcCCccCCEEecceeEE--ECCeEecccC
Confidence 357999988765554443 3478899887
No 156
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.82 E-value=29 Score=26.40 Aligned_cols=38 Identities=21% Similarity=0.439 Sum_probs=22.9
Q ss_pred cccccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCcccccccc
Q 016946 329 DKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVV 377 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~ 377 (380)
...|..|-..+. ++ ....-+..||..| ..|-.|+..|.
T Consensus 25 ~~~C~~C~~~I~-~~--~v~a~~~~~H~~C--------F~C~~C~~~L~ 62 (90)
T 2dar_A 25 TPMCAHCNQVIR-GP--FLVALGKSWHPEE--------FNCAHCKNTMA 62 (90)
T ss_dssp CCBBSSSCCBCC-SC--EEEETTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCccCCCEec-ce--EEEECCccccccC--------CccCCCCCCCC
Confidence 456888877764 22 2234567777666 35667766654
No 157
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=25.67 E-value=26 Score=28.52 Aligned_cols=11 Identities=36% Similarity=1.096 Sum_probs=10.3
Q ss_pred ccHHHHHHHHh
Q 016946 354 FHIQCIKQWLS 364 (380)
Q Consensus 354 FH~~CI~~WL~ 364 (380)
||..||..|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 158
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=25.48 E-value=26 Score=28.54 Aligned_cols=11 Identities=27% Similarity=1.002 Sum_probs=10.3
Q ss_pred ccHHHHHHHHh
Q 016946 354 FHIQCIKQWLS 364 (380)
Q Consensus 354 FH~~CI~~WL~ 364 (380)
||..||..|+.
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 159
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=25.24 E-value=38 Score=25.62 Aligned_cols=39 Identities=15% Similarity=0.269 Sum_probs=26.3
Q ss_pred cccccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCccccccccc
Q 016946 329 DKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVVN 378 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~~ 378 (380)
...|..|-+.+.. + ....-+..||..| ..|-.|+..|..
T Consensus 25 ~~~C~~C~~~I~~-~--~~~a~~~~~H~~C--------F~C~~C~~~L~~ 63 (89)
T 1x64_A 25 MPLCDKCGSGIVG-A--VVKARDKYRHPEC--------FVCADCNLNLKQ 63 (89)
T ss_dssp CCBCTTTCCBCCS-C--CEESSSCEECTTT--------CCCSSSCCCTTT
T ss_pred CCCcccCCCEecc-c--EEEECCceECccC--------CEecCCCCCCCC
Confidence 4678888887764 2 2334677888777 457778776653
No 160
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=24.88 E-value=49 Score=26.66 Aligned_cols=49 Identities=12% Similarity=0.068 Sum_probs=33.8
Q ss_pred ccccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCccccccccc
Q 016946 330 KKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVVN 378 (380)
Q Consensus 330 ~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~~ 378 (380)
..|..|-..+..........=+..||..|....+..+..|-.|...|.+
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 4688887777521111233556789999988877666689999988864
No 161
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.45 E-value=31 Score=25.52 Aligned_cols=38 Identities=16% Similarity=0.226 Sum_probs=25.9
Q ss_pred cccccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCcccccccc
Q 016946 329 DKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVV 377 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~ 377 (380)
...|..|-..+... ....-+..||..|. .|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~~---~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVGV---FVKLRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCSS---CEECSSCEECTTTT--------SCSSSCCCHH
T ss_pred CCccccCCCCccCc---EEEECcceeCcCcC--------eeCCCCCCCC
Confidence 46799998887642 23455788888773 5777776653
No 162
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.42 E-value=41 Score=24.16 Aligned_cols=40 Identities=18% Similarity=0.419 Sum_probs=23.8
Q ss_pred ccccccccccccc--CCcceeccCCCcccHHHHHHHHhcCCCCcccccccc
Q 016946 329 DKKCTICQEEYEA--DDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVV 377 (380)
Q Consensus 329 d~~CsICleef~~--~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~ 377 (380)
...|..|-..+.. .+.+ ...-+..||..| ..|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~-~~a~~~~wH~~C--------F~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKY-ISFEERQWHNDC--------FNCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSC-EECSSCEECTTT--------CBCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcce-EEECCcccCccc--------CEeccCCCcCC
Confidence 3567888777664 2222 233567777766 35667766654
No 163
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=23.26 E-value=27 Score=24.88 Aligned_cols=41 Identities=20% Similarity=0.604 Sum_probs=27.9
Q ss_pred cccccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCccccccccc
Q 016946 329 DKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVVN 378 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~~ 378 (380)
...|..|-..+...+.+.. .=+..||..|. .|-.|...|..
T Consensus 11 ~~~C~~C~~~i~~~e~~~~-~~~~~~H~~CF--------~C~~C~~~L~~ 51 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVN-SNGELYHEQCF--------VCAQCFQQFPE 51 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEE-ETTEEEETTTS--------SCTTTCCCCGG
T ss_pred CccchhcCccccCCceEEE-eCcCeeCcCCC--------cccCCCCCCCC
Confidence 4679999988776654322 45667887774 57788777643
No 164
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.73 E-value=42 Score=24.37 Aligned_cols=40 Identities=20% Similarity=0.559 Sum_probs=25.7
Q ss_pred cccccccccccccCCcceeccCCCcccHHHHHHHHhcCCCCcccccccc
Q 016946 329 DKKCTICQEEYEADDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVV 377 (380)
Q Consensus 329 d~~CsICleef~~~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~ 377 (380)
...|..|-..+...+.+ ...-+..||..| ..|-.|+..|.
T Consensus 11 ~~~C~~C~~~I~~~~~~-~~a~~~~~H~~C--------F~C~~C~~~L~ 50 (77)
T 1g47_A 11 SATCERCKGGFAPAEKI-VNSNGELYHEQC--------FVCAQCFQQFP 50 (77)
T ss_dssp CCBCSSSCCBCCSTTTC-EEETTEEECTTT--------CCCTTTCCCCG
T ss_pred CCCchhcCCccCCCceE-EEeCccEecccc--------CeECCCCCCCC
Confidence 46788888887654433 223466788776 35777776654
No 165
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.15 E-value=48 Score=23.60 Aligned_cols=26 Identities=15% Similarity=0.448 Sum_probs=12.5
Q ss_pred ccccccccccccCCcceeccCCCcccHHH
Q 016946 330 KKCTICQEEYEADDEMGKLDCGHSFHIQC 358 (380)
Q Consensus 330 ~~CsICleef~~~e~v~~LpCgH~FH~~C 358 (380)
..|..|-..+... . ...-+..||..|
T Consensus 6 ~~C~~C~~~I~~~-~--~~a~~~~~H~~C 31 (70)
T 2d8z_A 6 SGCVQCKKPITTG-G--VTYREQPWHKEC 31 (70)
T ss_dssp CBCSSSCCBCCSS-E--EESSSSEEETTT
T ss_pred CCCcccCCeeccc-e--EEECccccCCCC
Confidence 4566666555422 1 223455566554
No 166
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.78 E-value=47 Score=24.21 Aligned_cols=40 Identities=18% Similarity=0.467 Sum_probs=25.1
Q ss_pred ccccccccccccc--CCcceeccCCCcccHHHHHHHHhcCCCCcccccccc
Q 016946 329 DKKCTICQEEYEA--DDEMGKLDCGHSFHIQCIKQWLSQKNACPVCKAAVV 377 (380)
Q Consensus 329 d~~CsICleef~~--~e~v~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~i~ 377 (380)
...|..|-..+.. ... ....-+..||..|. .|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~g~~~-~~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAK-FICFQDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCC-EEEETTEEEEGGGC--------BCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCce-eEEECCcccCcccC--------ChhhCCCcCC
Confidence 3578888887764 222 23345677887773 5777766654
No 167
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=21.36 E-value=26 Score=22.98 Aligned_cols=10 Identities=20% Similarity=0.540 Sum_probs=4.8
Q ss_pred cccccccccc
Q 016946 330 KKCTICQEEY 339 (380)
Q Consensus 330 ~~CsICleef 339 (380)
..|+||+..|
T Consensus 6 FiCP~C~~~l 15 (34)
T 3mjh_B 6 FICPQCMKSL 15 (34)
T ss_dssp EECTTTCCEE
T ss_pred cCCcHHHHHc
Confidence 3455555443
No 168
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=21.07 E-value=8.3 Score=29.89 Aligned_cols=16 Identities=31% Similarity=1.049 Sum_probs=13.2
Q ss_pred cCCCcccHHHHHHHHh
Q 016946 349 DCGHSFHIQCIKQWLS 364 (380)
Q Consensus 349 pCgH~FH~~CI~~WL~ 364 (380)
.|++.||..|-.+|=+
T Consensus 48 ~C~~~FC~~C~~~w~~ 63 (86)
T 2ct7_A 48 QCHQTFCVRCKRQWEE 63 (86)
T ss_dssp TTCCEECSSSCSBCCT
T ss_pred CCCCccccccCCchhh
Confidence 4999999999888833
No 169
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=20.55 E-value=38 Score=29.60 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=13.7
Q ss_pred eeccCCCcccHHHHHHHHhcCCCCcccccc
Q 016946 346 GKLDCGHSFHIQCIKQWLSQKNACPVCKAA 375 (380)
Q Consensus 346 ~~LpCgH~FH~~CI~~WL~~k~sCPvCR~~ 375 (380)
++..|||+|-. ..-..||+|..+
T Consensus 140 ~C~~CG~i~~~-------~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 140 ICPICGYTAVD-------EAPEYCPVCGAP 162 (170)
T ss_dssp ECTTTCCEEES-------CCCSBCTTTCCB
T ss_pred EeCCCCCeeCC-------CCCCCCCCCCCC
Confidence 34457776651 223489999753
No 170
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=20.03 E-value=60 Score=26.11 Aligned_cols=25 Identities=12% Similarity=0.335 Sum_probs=10.2
Q ss_pred CcccHHHHHHHHhcCCCCccccccc
Q 016946 352 HSFHIQCIKQWLSQKNACPVCKAAV 376 (380)
Q Consensus 352 H~FH~~CI~~WL~~k~sCPvCR~~i 376 (380)
..||..|..+-+.....|..|...|
T Consensus 52 ~~yC~~~y~~~~~~~~~C~~C~~~I 76 (131)
T 2xjy_A 52 RKLCRRDYLRLFGQDGLCASCDKRI 76 (131)
T ss_dssp EEECHHHHHHHHCCCEECTTTCCEE
T ss_pred EEeecCchhhhCCCccChhhcCCcc
Confidence 3444444444332222444444444
Done!