BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016947
         (380 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8VZL4|MSL1_ARATH Mechanosensitive ion channel protein 1, mitochondrial
           OS=Arabidopsis thaliana GN=MSL1 PE=2 SV=1
          Length = 497

 Score =  306 bits (783), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 159/286 (55%), Positives = 198/286 (69%), Gaps = 9/286 (3%)

Query: 95  PTSKNFCSR-RLATFASISPFLGHRSYSSFFGSKTDKSTEIDVPAASSGSETDVSNHGIV 153
           P+  +F S  RL   A    +LGH SY+  F SK+D     D  +  +   T   +    
Sbjct: 49  PSMISFSSNIRLHNDAKPFNYLGHSSYARAFSSKSD-----DFGSIVASGVTGSGDGNGN 103

Query: 154 GSDSFDKIKDAWKSVVDGVSYTGQKAKD---ELSPQIEQLLDAHPYLRDVIVPVSCYLTG 210
           G+D  +K KD  ++ VD V+ T +K KD   E+ P ++Q LD++PYL+DVIVPVS  +TG
Sbjct: 104 GNDWVEKAKDVLQTSVDAVTETAKKTKDVSDEMIPHVQQFLDSNPYLKDVIVPVSLTMTG 163

Query: 211 TVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFV 270
           T+ AWVVMPR+LRRFH YA+Q    LL  G S E VPYEKSFWGALEDP RYL+TF+AF 
Sbjct: 164 TLFAWVVMPRILRRFHTYAMQSSAKLLPVGFSNEDVPYEKSFWGALEDPARYLVTFIAFA 223

Query: 271 QIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLAL 330
           QI  MVAPTTIA+QY +   +GAVILS VWFL+RWKTNV TR ++++S  GLDREK+L L
Sbjct: 224 QIAAMVAPTTIAAQYFSPTVKGAVILSLVWFLYRWKTNVITRMLSAKSFGGLDREKVLTL 283

Query: 331 DRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGQCLLLATCSLL 376
           D++SSVGLF IGLMA AEACGVAVQSILTVGG+GG     A   +L
Sbjct: 284 DKVSSVGLFAIGLMASAEACGVAVQSILTVGGVGGVATAFAARDIL 329


>sp|B2RZR0|DDL_BORHD D-alanine--D-alanine ligase OS=Borrelia hermsii (strain DAH) GN=ddl
           PE=3 SV=1
          Length = 365

 Score = 34.3 bits (77), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 4/70 (5%)

Query: 73  VHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATF-ASISPFLGHRSYSSFF---GSKT 128
           + GF  +    C  A  + S +  +K FC   L +F   + PF+G R Y  F    G K 
Sbjct: 106 IQGFLKMMDIPCVGAGILGSAISINKYFCKLLLKSFNIPLVPFIGFRKYDYFLDKEGIKK 165

Query: 129 DKSTEIDVPA 138
           D    ++ P 
Sbjct: 166 DIKQSLNYPV 175


>sp|O25170|Y415_HELPY Uncharacterized MscS family protein HP_0415 OS=Helicobacter pylori
           (strain ATCC 700392 / 26695) GN=HP_0415 PE=3 SV=1
          Length = 623

 Score = 33.1 bits (74), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 4/91 (4%)

Query: 290 WRGAV-ILSFVWF---LHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMA 345
           W GAV I+   W    L +         MA++S     +E +  + ++    +F++ L+ 
Sbjct: 321 WVGAVYIMLLAWLVIALFKGYGEALVTNMATKSTHNFRKEVINLILKVVYFLIFIVALLG 380

Query: 346 LAEACGVAVQSILTVGGIGGQCLLLATCSLL 376
           + +  G  V +I+   GIGG  + LA   +L
Sbjct: 381 VLKQLGFNVSAIIASLGIGGLAVALAVKDVL 411


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.134    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 131,171,263
Number of Sequences: 539616
Number of extensions: 5204258
Number of successful extensions: 14074
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 14065
Number of HSP's gapped (non-prelim): 15
length of query: 380
length of database: 191,569,459
effective HSP length: 119
effective length of query: 261
effective length of database: 127,355,155
effective search space: 33239695455
effective search space used: 33239695455
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.5 bits)