Query 016947
Match_columns 380
No_of_seqs 203 out of 1243
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 04:15:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016947.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016947hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11465 putative mechanosensi 99.6 8.1E-14 1.8E-18 150.6 21.0 132 245-380 419-563 (741)
2 PRK10334 mechanosensitive chan 99.4 1.3E-12 2.8E-17 127.9 13.4 95 283-380 25-119 (286)
3 PRK10929 putative mechanosensi 99.1 3.9E-09 8.4E-14 119.0 21.6 93 286-380 833-925 (1109)
4 PRK11281 hypothetical protein; 99.1 3.8E-09 8.1E-14 119.3 21.1 94 285-380 835-928 (1113)
5 COG0668 MscS Small-conductance 98.8 5.5E-08 1.2E-12 93.4 12.9 58 323-380 79-137 (316)
6 COG3264 Small-conductance mech 98.4 1.9E-05 4.1E-10 86.7 20.3 91 287-379 559-649 (835)
7 PF05552 TM_helix: Conserved T 92.6 0.23 4.9E-06 36.9 4.4 41 282-325 11-51 (53)
8 PRK10334 mechanosensitive chan 88.7 21 0.00045 35.4 15.4 59 202-274 29-87 (286)
9 PF12794 MscS_TM: Mechanosensi 80.2 71 0.0015 32.3 15.4 106 244-355 113-222 (340)
10 PF11449 DUF2899: Protein of u 79.6 18 0.0004 36.4 10.5 46 324-369 176-225 (298)
11 PRK11281 hypothetical protein; 68.2 1.7E+02 0.0036 34.8 15.9 56 293-350 582-639 (1113)
12 COG4956 Integral membrane prot 67.3 1.4E+02 0.003 30.8 13.1 38 194-232 39-76 (356)
13 PRK11465 putative mechanosensi 61.9 2.8E+02 0.0062 31.5 17.0 24 328-351 424-447 (741)
14 PF12794 MscS_TM: Mechanosensi 58.0 2.2E+02 0.0047 28.9 18.5 75 292-370 87-167 (340)
15 COG2981 CysZ Uncharacterized p 57.9 2E+02 0.0043 28.4 13.6 23 249-271 125-147 (250)
16 COG1030 NfeD Membrane-bound se 54.3 1.2E+02 0.0025 32.3 10.5 35 245-279 220-256 (436)
17 PF05552 TM_helix: Conserved T 52.8 38 0.00081 25.0 4.9 33 196-232 14-46 (53)
18 PRK10929 putative mechanosensi 50.0 3.2E+02 0.007 32.5 14.1 30 247-276 866-895 (1109)
19 PF03806 ABG_transport: AbgT p 44.8 3.5E+02 0.0075 29.4 12.4 35 197-231 201-236 (502)
20 PF02674 Colicin_V: Colicin V 44.5 2E+02 0.0044 24.5 11.7 49 207-267 66-114 (146)
21 PRK10263 DNA translocase FtsK; 43.5 4.3E+02 0.0093 32.2 13.8 20 359-378 141-160 (1355)
22 PF11188 DUF2975: Protein of u 43.2 2E+02 0.0043 24.1 14.5 26 246-271 54-79 (136)
23 PRK12768 CysZ-like protein; Re 43.1 3.3E+02 0.007 26.6 17.5 13 293-305 154-166 (240)
24 PRK11677 hypothetical protein; 43.0 37 0.00081 30.4 4.2 60 199-267 2-67 (134)
25 PRK13892 conjugal transfer pro 42.7 1.1E+02 0.0025 27.5 7.1 64 246-309 44-110 (134)
26 COG4858 Uncharacterized membra 41.4 3.2E+02 0.007 26.3 10.2 39 183-221 110-148 (226)
27 PF14348 DUF4400: Domain of un 39.0 3.2E+02 0.0069 25.3 10.6 75 301-379 122-197 (198)
28 PRK01844 hypothetical protein; 36.5 1.6E+02 0.0034 24.0 6.3 27 204-233 11-37 (72)
29 PF04367 DUF502: Protein of un 34.2 2.2E+02 0.0049 23.9 7.5 46 202-261 4-49 (108)
30 PRK10845 colicin V production 33.8 3.6E+02 0.0078 24.4 11.6 62 287-349 61-122 (162)
31 PF03672 UPF0154: Uncharacteri 33.2 1.2E+02 0.0026 24.1 5.1 28 203-233 3-30 (64)
32 PF01810 LysE: LysE type trans 30.7 3.9E+02 0.0085 23.8 13.7 90 246-347 99-189 (191)
33 PF12273 RCR: Chitin synthesis 29.5 42 0.00092 29.1 2.4 11 200-210 2-12 (130)
34 PF06570 DUF1129: Protein of u 28.2 4.4E+02 0.0095 24.5 9.1 7 157-163 79-85 (206)
35 KOG4112 Signal peptidase subun 27.3 68 0.0015 27.4 3.1 18 357-374 31-48 (101)
36 KOG0054 Multidrug resistance-a 25.8 1.3E+03 0.029 28.4 15.7 51 228-278 908-958 (1381)
37 PF13726 Na_H_antiport_2: Na+- 25.0 80 0.0017 26.5 3.1 42 338-379 4-46 (88)
38 PF04156 IncA: IncA protein; 24.8 2.6E+02 0.0057 25.3 6.8 12 359-370 39-50 (191)
39 COG1377 FlhB Flagellar biosynt 24.3 8.3E+02 0.018 25.5 17.8 28 202-229 34-61 (363)
40 PRK00523 hypothetical protein; 24.2 3.5E+02 0.0075 22.0 6.4 11 223-233 28-38 (72)
41 KOG4016 Synaptic vesicle prote 23.3 5.8E+02 0.013 24.9 8.8 99 191-305 61-164 (233)
42 PF06305 DUF1049: Protein of u 23.2 1.7E+02 0.0036 22.1 4.4 31 197-227 18-48 (68)
43 PRK14471 F0F1 ATP synthase sub 22.9 1.5E+02 0.0032 26.5 4.7 33 200-232 8-40 (164)
44 COG3105 Uncharacterized protei 22.6 1.2E+02 0.0027 27.3 3.9 32 196-227 4-35 (138)
45 PRK13871 conjugal transfer pro 22.2 4.9E+02 0.011 23.5 7.6 59 248-306 40-98 (135)
46 PF14159 CAAD: CAAD domains of 21.8 2.7E+02 0.0059 23.1 5.7 59 248-307 7-69 (90)
47 PRK04949 putative sulfate tran 20.1 8.2E+02 0.018 23.9 17.8 18 297-317 172-189 (251)
No 1
>PRK11465 putative mechanosensitive channel protein; Provisional
Probab=99.59 E-value=8.1e-14 Score=150.62 Aligned_cols=132 Identities=14% Similarity=0.121 Sum_probs=98.4
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-----hhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhh
Q 016947 245 QVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPT-----TIASQYLAQAWRGAVIL---SFVWFLHRWKTNVFTRAMAS 316 (380)
Q Consensus 245 ~~~~ddsll~aL~~PlrllI~~ia~~l~~~ll~p~-----~~~~~~L~~il~illIl---il~W~l~Rlv~~~i~~~l~r 316 (380)
.+.|++.+.++++ |+.+++++++++.+...+... ......+..+..+++++ .++|.+.+ ..+++.+.+
T Consensus 419 ~~~~~~~~l~~lr-~l~~~~~vl~ll~a~~~l~l~~~~~~~~g~~~i~~l~~i~iil~i~~v~w~l~~---~~ie~~l~~ 494 (741)
T PRK11465 419 LNGWLSAALKTAR-ILTVCVAVMLLLNAWGLFDFWNWLQNGAGEKTVDILIRIALILFFSAVGWTVLA---SLIENRLAS 494 (741)
T ss_pred HhhhhHHHHHHHH-HHHHHHHHHHHHHHHHhcchHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhh
Confidence 5679999999999 999999988888865533221 11233344444444444 55666655 222332221
Q ss_pred h-----cccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHhHHHHHHHHhhhhhhhhcC
Q 016947 317 Q-----SIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGQCLLLATCSLLFLFH 380 (380)
Q Consensus 317 ~-----~~~~~d~t~i~~L~rlikvlI~vIgvl~iL~~lGI~VtsLLAglGIGGIAVGLAAQdtLsNfF 380 (380)
+ .....++++.+++++++++++++++++++|+.+|+++++++|++|++|+|||||+|++++|||
T Consensus 495 ~~~~~~~~~~r~~Tl~~ll~~~~~~~i~~i~~l~vL~~lGi~it~LlA~aGi~GlaiGfaaQ~~l~N~i 563 (741)
T PRK11465 495 DIHGRPLPSARTRTLLTLFRNALAVIISTITIMIVLSEIGVNIAPLLAGAGALGLAISFGSQTLVKDII 563 (741)
T ss_pred hhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 112457899999999999999999999999999999999999999999999999999999985
No 2
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=99.43 E-value=1.3e-12 Score=127.89 Aligned_cols=95 Identities=22% Similarity=0.237 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHh
Q 016947 283 SQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGG 362 (380)
Q Consensus 283 ~~~L~~il~illIlil~W~l~Rlv~~~i~~~l~r~~~~~~d~t~i~~L~rlikvlI~vIgvl~iL~~lGI~VtsLLAglG 362 (380)
..+.++++..+++++++|++.|++..+.++.+.++ +.|++...++.+++++++++++++.+++.+|+++++++|++|
T Consensus 25 ~~~~~~i~~al~il~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~l~~lGi~~~~l~a~~G 101 (286)
T PRK10334 25 LSYAVNIVAALAIIIVGLIIARMISNAVNRLMISR---KIDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLG 101 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 44667888889999999999999999998887553 578889999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhcC
Q 016947 363 IGGQCLLLATCSLLFLFH 380 (380)
Q Consensus 363 IGGIAVGLAAQdtLsNfF 380 (380)
++|+|+|||+||+++|++
T Consensus 102 ~~glaiG~a~q~~l~N~~ 119 (286)
T PRK10334 102 AAGLAVGLALQGSLSNLA 119 (286)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999985
No 3
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=99.13 E-value=3.9e-09 Score=119.03 Aligned_cols=93 Identities=15% Similarity=0.092 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHhHHH
Q 016947 286 LAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGG 365 (380)
Q Consensus 286 L~~il~illIlil~W~l~Rlv~~~i~~~l~r~~~~~~d~t~i~~L~rlikvlI~vIgvl~iL~~lGI~VtsLLAglGIGG 365 (380)
+..++.++++++++|++.|++..+.++.+.++ .+.|+....++.++++++++++|++++++.+|++.+++.+.+|+.|
T Consensus 833 l~~ll~AllIliv~~~l~r~l~~lle~~l~~~--~~l~~~~~~~i~~l~~y~I~~ig~l~~L~~lGI~~t~l~al~galG 910 (1109)
T PRK10929 833 LGSVLIAILVFIITTQLVRNLPALLELALLQH--LDLTPGTGYAITTITKYLLMLIGGLVGFSMIGIEWSKLQWLVAALG 910 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cCCChhHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 35677778889999999999999988877443 3678899999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhcC
Q 016947 366 QCLLLATCSLLFLFH 380 (380)
Q Consensus 366 IAVGLAAQdtLsNfF 380 (380)
++||||+||+++||+
T Consensus 911 VgIGfAlQ~ilsNfi 925 (1109)
T PRK10929 911 VGLGFGLQEIFANFI 925 (1109)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999985
No 4
>PRK11281 hypothetical protein; Provisional
Probab=99.13 E-value=3.8e-09 Score=119.35 Aligned_cols=94 Identities=14% Similarity=0.120 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHhHH
Q 016947 285 YLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIG 364 (380)
Q Consensus 285 ~L~~il~illIlil~W~l~Rlv~~~i~~~l~r~~~~~~d~t~i~~L~rlikvlI~vIgvl~iL~~lGI~VtsLLAglGIG 364 (380)
.++.++.++++++++|++.|++..+.++...++ .+.++....++.++++++++++|+++++..+|++.+++.+.+|.+
T Consensus 835 tl~~Ll~allIl~i~~~l~r~l~~ll~~~~~~r--l~l~~~~~~~i~~li~y~I~~i~iliaL~~lGi~~t~L~~l~gaL 912 (1113)
T PRK11281 835 TLGNLLFALIILVVTYVLVRNLPGLLEVLVLSR--LNLRQGTSYAITTLLTYIIIAVGAVTAFSTLGVSWDKLQWLVAAL 912 (1113)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 357888889999999999999998887765332 255667778899999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhcC
Q 016947 365 GQCLLLATCSLLFLFH 380 (380)
Q Consensus 365 GIAVGLAAQdtLsNfF 380 (380)
|+++|||+|++++||+
T Consensus 913 gVgIGfglQ~ilsNfI 928 (1113)
T PRK11281 913 SVGLGFGLQEIFANFV 928 (1113)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999985
No 5
>COG0668 MscS Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=98.81 E-value=5.5e-08 Score=93.37 Aligned_cols=58 Identities=24% Similarity=0.262 Sum_probs=53.8
Q ss_pred chHHHH-HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHhHHHHHHHHhhhhhhhhcC
Q 016947 323 DREKML-ALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGQCLLLATCSLLFLFH 380 (380)
Q Consensus 323 d~t~i~-~L~rlikvlI~vIgvl~iL~~lGI~VtsLLAglGIGGIAVGLAAQdtLsNfF 380 (380)
+..... ++.++.++++++++++.++..+|+++++++|++|++|+|+|||+|++++|++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~lla~~G~~glaigla~q~~~~n~~ 137 (316)
T COG0668 79 RETTLSVFLSNLLRILILVVALLIVLSVLGVQVTSLLAGLGALGLAIGLALQDLLSNLI 137 (316)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 444555 8999999999999999999999999999999999999999999999999985
No 6
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=98.43 E-value=1.9e-05 Score=86.69 Aligned_cols=91 Identities=13% Similarity=0.150 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHhHHHH
Q 016947 287 AQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGQ 366 (380)
Q Consensus 287 ~~il~illIlil~W~l~Rlv~~~i~~~l~r~~~~~~d~t~i~~L~rlikvlI~vIgvl~iL~~lGI~VtsLLAglGIGGI 366 (380)
..++..++++++++++.|++.++.+...-++ .+.|+-....+.++++++++.+|+++.++.+|+|.+++--.+|..|+
T Consensus 559 ~~ll~avl~~~~~~~l~r~~~~~L~~~vl~r--~~~~~G~r~~I~t~~~Y~~~~i~~l~~lS~~Gi~lssL~~~~gALsv 636 (835)
T COG3264 559 GALLQAVLLFLITYVLTRNLPGWLEVRVLQR--LDLDAGTRYSITTLLGYLLIAIGGLVGLSTLGIDLSSLQWLAGALSV 636 (835)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccCcchHHHHHHHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHhhh
Confidence 4567778888999999999999888554433 46788888899999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhc
Q 016947 367 CLLLATCSLLFLF 379 (380)
Q Consensus 367 AVGLAAQdtLsNf 379 (380)
.+||+.|++.+||
T Consensus 637 GiGFGLQ~I~~NF 649 (835)
T COG3264 637 GLGFGLQEIVSNF 649 (835)
T ss_pred hhchhHHHHHHHh
Confidence 9999999999998
No 7
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=92.58 E-value=0.23 Score=36.94 Aligned_cols=41 Identities=20% Similarity=0.484 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchH
Q 016947 282 ASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDRE 325 (380)
Q Consensus 282 ~~~~L~~il~illIlil~W~l~Rlv~~~i~~~l~r~~~~~~d~t 325 (380)
...++|++...+++++++|++.+++..+.++.+.+. +.|++
T Consensus 11 ii~~lP~iv~AilIl~vG~~va~~v~~~~~~~l~~~---~~d~~ 51 (53)
T PF05552_consen 11 IIAYLPNIVGAILILIVGWWVAKFVRKLVRRLLEKR---GVDKT 51 (53)
T ss_dssp --GGHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---TS-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CCccc
Confidence 456789999999999999999999999999999875 55654
No 8
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=88.72 E-value=21 Score=35.43 Aligned_cols=59 Identities=14% Similarity=0.152 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016947 202 VPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGM 274 (380)
Q Consensus 202 v~l~ilLla~lla~lv~~~llrrL~k~a~kt~~~~l~~~~~~~~~~~ddsll~aL~~PlrllI~~ia~~l~~~ 274 (380)
..++.+++..+++|++.+++.+.+++...++ ..+..+...+.+-++++++++++..+..
T Consensus 29 ~~i~~al~il~~~~~~~~~i~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~i~~~~~~~~l~ 87 (286)
T PRK10334 29 VNIVAALAIIIVGLIIARMISNAVNRLMISR--------------KIDATVADFLSALVRYGIIAFTLIAALG 87 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------------CCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555556666655555555555443 3456667777888888888777766444
No 9
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=80.15 E-value=71 Score=32.34 Aligned_cols=106 Identities=14% Similarity=0.058 Sum_probs=65.1
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 016947 244 EQVPYEKSFWGALEDPVRYLITFMAFVQIGMMV---APTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIA 320 (380)
Q Consensus 244 ~~~~~ddsll~aL~~PlrllI~~ia~~l~~~ll---~p~~~~~~~L~~il~illIlil~W~l~Rlv~~~i~~~l~r~~~~ 320 (380)
.+-.|.+...+.+++-.+.+++++......... .|.....+.+.++..++..+.++|+..+..+.-......
T Consensus 113 ~HF~w~~~~~~~~r~~l~~~~~~~~pl~~~~~~~~~~~~~~~~d~LGrl~~ii~~~~l~~~~~~l~~~~~~~~~~----- 187 (340)
T PF12794_consen 113 RHFGWPKERVQRLRRQLRWLIWVLVPLLFISIFAENLPDGLARDVLGRLAFIILLLLLAVFLWRLLRPGWGLYQP----- 187 (340)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhHHHHHHHHHHHHHHHHHHHHHccccccccC-----
Confidence 356789999999999999998887555532211 334445667788777777788888887765543222221
Q ss_pred ccchHHHHHHHHHHHHHHHHH-HHHHHHHHcCCcHH
Q 016947 321 GLDREKMLALDRISSVGLFVI-GLMALAEACGVAVQ 355 (380)
Q Consensus 321 ~~d~t~i~~L~rlikvlI~vI-gvl~iL~~lGI~Vt 355 (380)
.+......+.++...++.++ -+++++..+|+--|
T Consensus 188 -~~~~~~~~~~~l~~~~li~~Pl~li~la~~GY~yT 222 (340)
T PF12794_consen 188 -KPDSWIHRLRYLWWPLLILAPLALIVLALLGYYYT 222 (340)
T ss_pred -CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 12334455556665555444 34445556676544
No 10
>PF11449 DUF2899: Protein of unknown function (DUF2899); InterPro: IPR021552 This is a bacterial family of uncharacterised proteins.
Probab=79.57 E-value=18 Score=36.38 Aligned_cols=46 Identities=17% Similarity=0.112 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH----cCCcHHHHHHHHhHHHHHHH
Q 016947 324 REKMLALDRISSVGLFVIGLMALAEA----CGVAVQSILTVGGIGGQCLL 369 (380)
Q Consensus 324 ~t~i~~L~rlikvlI~vIgvl~iL~~----lGI~VtsLLAglGIGGIAVG 369 (380)
....+.++...++.+|+++..++++. .|.|+..++...|+-+..+|
T Consensus 176 ~~~~~a~~hT~~I~~~v~~~~l~~~~~i~~~G~dl~~~l~~~~~~~plia 225 (298)
T PF11449_consen 176 HILQKALQHTLFIFVWVFVAFLALELVIEFIGEDLAALLSGNGILQPLIA 225 (298)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHhCchHHHHHH
Confidence 34778888889999999998887764 59999999988887766655
No 11
>PRK11281 hypothetical protein; Provisional
Probab=68.19 E-value=1.7e+02 Score=34.81 Aligned_cols=56 Identities=11% Similarity=0.160 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 016947 293 AVILSFVWFLHRWKTNVFT--RAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEAC 350 (380)
Q Consensus 293 llIlil~W~l~Rlv~~~i~--~~l~r~~~~~~d~t~i~~L~rlikvlI~vIgvl~iL~~l 350 (380)
..-+.+.|+++.+...+.. -+..++ -+.++..+..+++-.+-.++++..+++...+
T Consensus 582 ~~~~~~~w~~~~~~~~~~~~~Gl~~~H--F~w~~~~~~~~~~~~~~~~~~~~pl~~~~~~ 639 (1113)
T PRK11281 582 SLKLALFWLVFATCYRVLRPNGVAERH--FGMPKEQVSHFRRQIVRLSLALLPLLFWSVV 639 (1113)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCeeHHh--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334556666655443321 011111 3567777777777777666666555555443
No 12
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=67.33 E-value=1.4e+02 Score=30.76 Aligned_cols=38 Identities=16% Similarity=0.231 Sum_probs=21.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 016947 194 HPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQG 232 (380)
Q Consensus 194 ~~~L~~wlv~l~ilLla~lla~lv~~~llrrL~k~a~kt 232 (380)
++++..|..++...+++..+...+. ..++|+..+.+|.
T Consensus 39 n~~v~~ligai~~~li~~~~~~~~~-~~~~~le~~i~k~ 76 (356)
T COG4956 39 NEYVDALIGAIIFFLISFWFGKYVL-NWLKRLEEQIRKL 76 (356)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhc
Confidence 5555555555555555555544444 4556777777666
No 13
>PRK11465 putative mechanosensitive channel protein; Provisional
Probab=61.88 E-value=2.8e+02 Score=31.50 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcC
Q 016947 328 LALDRISSVGLFVIGLMALAEACG 351 (380)
Q Consensus 328 ~~L~rlikvlI~vIgvl~iL~~lG 351 (380)
+.+.+.++.+++++.++.++..+|
T Consensus 424 ~~~l~~lr~l~~~~~vl~ll~a~~ 447 (741)
T PRK11465 424 SAALKTARILTVCVAVMLLLNAWG 447 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555
No 14
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=57.97 E-value=2.2e+02 Score=28.88 Aligned_cols=75 Identities=13% Similarity=0.186 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc----ccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCC--cHHHHHHHHhHHH
Q 016947 292 GAVILSFVWFLHRWKTNVFTRAMASQS----IAGLDREKMLALDRISSVGLFVIGLMALAEACGV--AVQSILTVGGIGG 365 (380)
Q Consensus 292 illIlil~W~l~Rlv~~~i~~~l~r~~----~~~~d~t~i~~L~rlikvlI~vIgvl~iL~~lGI--~VtsLLAglGIGG 365 (380)
...-....|++..+...+ ..++. .-+.+++..+.+++-.+..++++..+++...+.. +..-.-..+|-.+
T Consensus 87 ~l~~~a~~~~~~~~~~~l----~rp~Gl~~~HF~w~~~~~~~~r~~l~~~~~~~~pl~~~~~~~~~~~~~~~~d~LGrl~ 162 (340)
T PF12794_consen 87 ALLAMALFWLVFEFFRRL----LRPNGLAERHFGWPKERVQRLRRQLRWLIWVLVPLLFISIFAENLPDGLARDVLGRLA 162 (340)
T ss_pred HHHHHHHHHHHHHHHHHH----HCCCCeEeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhHHHHH
Confidence 333444456665554433 22211 1356788888888888888887777766666543 3333333445444
Q ss_pred HHHHH
Q 016947 366 QCLLL 370 (380)
Q Consensus 366 IAVGL 370 (380)
+.+++
T Consensus 163 ~ii~~ 167 (340)
T PF12794_consen 163 FIILL 167 (340)
T ss_pred HHHHH
Confidence 44444
No 15
>COG2981 CysZ Uncharacterized protein involved in cysteine biosynthesis [Amino acid transport and metabolism]
Probab=57.92 E-value=2e+02 Score=28.45 Aligned_cols=23 Identities=17% Similarity=-0.083 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 016947 249 EKSFWGALEDPVRYLITFMAFVQ 271 (380)
Q Consensus 249 ddsll~aL~~PlrllI~~ia~~l 271 (380)
.+.+-+++.+-.+-+...+...+
T Consensus 125 ~~dipR~l~re~kkL~~~lp~~i 147 (250)
T COG2981 125 MKDIPRALAREWKKLGYVLPGAI 147 (250)
T ss_pred hhhhHHHHHHHHHHHHHHHHhHH
Confidence 44566666666666666553333
No 16
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=54.26 E-value=1.2e+02 Score=32.35 Aligned_cols=35 Identities=20% Similarity=0.406 Sum_probs=24.7
Q ss_pred CCcchHHHHHHHHHHHHHHHHH-HHHHH-HHHhhcCc
Q 016947 245 QVPYEKSFWGALEDPVRYLITF-MAFVQ-IGMMVAPT 279 (380)
Q Consensus 245 ~~~~ddsll~aL~~PlrllI~~-ia~~l-~~~ll~p~ 279 (380)
+.+|.+.+.+.+.+|.--.+.+ ++++. +..+..|.
T Consensus 220 ~ps~~~~ll~~ItdP~va~ILl~LG~~gLifel~spG 256 (436)
T COG1030 220 EPSWRERLLNWITDPSVALILLLLGFLGLIFELLSPG 256 (436)
T ss_pred CccHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccC
Confidence 3568899999999998766655 46666 44566563
No 17
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=52.76 E-value=38 Score=24.99 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=17.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 016947 196 YLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQG 232 (380)
Q Consensus 196 ~L~~wlv~l~ilLla~lla~lv~~~llrrL~k~a~kt 232 (380)
++++.+.+++++++|..++.++.+ -+.|..++.
T Consensus 14 ~lP~iv~AilIl~vG~~va~~v~~----~~~~~l~~~ 46 (53)
T PF05552_consen 14 YLPNIVGAILILIVGWWVAKFVRK----LVRRLLEKR 46 (53)
T ss_dssp GHCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHc
Confidence 445555666666666655555553 344444444
No 18
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=50.02 E-value=3.2e+02 Score=32.52 Aligned_cols=30 Identities=13% Similarity=0.051 Sum_probs=22.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016947 247 PYEKSFWGALEDPVRYLITFMAFVQIGMMV 276 (380)
Q Consensus 247 ~~ddsll~aL~~PlrllI~~ia~~l~~~ll 276 (380)
..+......+..-++++++++++..+....
T Consensus 866 ~l~~~~~~~i~~l~~y~I~~ig~l~~L~~l 895 (1109)
T PRK10929 866 DLTPGTGYAITTITKYLLMLIGGLVGFSMI 895 (1109)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456667777888889999988888755543
No 19
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=44.82 E-value=3.5e+02 Score=29.44 Aligned_cols=35 Identities=20% Similarity=0.123 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhh
Q 016947 197 LRDVIVPVSCYLTGTVLAWVV-MPRVLRRFHKYAIQ 231 (380)
Q Consensus 197 L~~wlv~l~ilLla~lla~lv-~~~llrrL~k~a~k 231 (380)
+..|......+++.+++.+++ .|++-.|+.++-.+
T Consensus 201 ~~N~yF~~aSt~~l~~v~~~vt~kivePrl~~~~~~ 236 (502)
T PF03806_consen 201 LMNYYFMIASTFVLTIVGTWVTEKIVEPRLGKYDGD 236 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccc
Confidence 456666666666665555544 44555666654433
No 20
>PF02674 Colicin_V: Colicin V production protein; InterPro: IPR003825 Colicin V is a small extracellular protein toxin which kills sensitive cells by disrupting their membrane potential []. Colicin V is produced from large low-copy plasmids and requires four plasmid genes for synthesis export and immunity [ 3034857). The cvaC gene is the structural gene for colicin V and cvaA and cvaB are required for processing and export of the toxin through the inner and outer membranes cvi confers immunity to the host cell. There are several stages at which host factors could play a role in colicin V production and mutations that alter any of these functions should result in lowered levels of extracellular colicin V ]. Colicin V production protein is required in Escherichia coli for colicin V production from plasmid pColV-K30 []. This entry represent the CvpA protein, which is involved in colicin V production. It is coded for by the cvpA gene, which is found upstream of the purF gene in the purF operon []. ; GO: 0009403 toxin biosynthetic process, 0016020 membrane
Probab=44.48 E-value=2e+02 Score=24.54 Aligned_cols=49 Identities=12% Similarity=0.223 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCccccCCcchHHHHHHHHHHHHHHHHHH
Q 016947 207 YLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFM 267 (380)
Q Consensus 207 lLla~lla~lv~~~llrrL~k~a~kt~~~~l~~~~~~~~~~~ddsll~aL~~PlrllI~~i 267 (380)
.++..++.+++.+.+.+.+++..++. ...+.|.+...+-.-.+..+.+.
T Consensus 66 f~~~f~~~~~i~~~i~~~l~~~~~~~------------~~~~~dr~lG~~~G~~~~~li~~ 114 (146)
T PF02674_consen 66 FIILFVLVYIIVRIIGKLLRRIVKKP------------FLGWLDRLLGALLGLAKGLLILS 114 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc------------cccHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444545555555544333 34445555556555555555544
No 21
>PRK10263 DNA translocase FtsK; Provisional
Probab=43.52 E-value=4.3e+02 Score=32.21 Aligned_cols=20 Identities=30% Similarity=0.341 Sum_probs=14.1
Q ss_pred HHHhHHHHHHHHhhhhhhhh
Q 016947 359 TVGGIGGQCLLLATCSLLFL 378 (380)
Q Consensus 359 AglGIGGIAVGLAAQdtLsN 378 (380)
+++|+.|..++-..+..++.
T Consensus 141 ~gGGIIG~lLs~lL~~LfG~ 160 (1355)
T PRK10263 141 ASGGVIGSLLSTTLQPLLHS 160 (1355)
T ss_pred cccchHHHHHHHHHHHHHhH
Confidence 56777777777777766653
No 22
>PF11188 DUF2975: Protein of unknown function (DUF2975); InterPro: IPR021354 This family of proteins have no known function. Some members are annotated as membrane proteins however this cannot be confirmed.
Probab=43.20 E-value=2e+02 Score=24.09 Aligned_cols=26 Identities=12% Similarity=0.058 Sum_probs=16.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHH
Q 016947 246 VPYEKSFWGALEDPVRYLITFMAFVQ 271 (380)
Q Consensus 246 ~~~ddsll~aL~~PlrllI~~ia~~l 271 (380)
.++.+.-.+.+++-...++....+..
T Consensus 54 ~~Fs~~n~~~l~~ig~~~l~~~~~~~ 79 (136)
T PF11188_consen 54 KPFSPENIRRLRRIGWLLLIISILSF 79 (136)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788777777776665555443333
No 23
>PRK12768 CysZ-like protein; Reviewed
Probab=43.14 E-value=3.3e+02 Score=26.57 Aligned_cols=13 Identities=23% Similarity=0.161 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHH
Q 016947 293 AVILSFVWFLHRW 305 (380)
Q Consensus 293 llIlil~W~l~Rl 305 (380)
+..+.-+|.+.|-
T Consensus 154 l~~l~~awLl~~e 166 (240)
T PRK12768 154 AFFVINGYLLGRE 166 (240)
T ss_pred HHHHHHHHHHHHH
Confidence 4444555666543
No 24
>PRK11677 hypothetical protein; Provisional
Probab=43.03 E-value=37 Score=30.36 Aligned_cols=60 Identities=13% Similarity=0.101 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhhCCccccCCCccccCCcchHHHHHHHHHHHHHHHHHH
Q 016947 199 DVIVPVSCYLTGTVLAWVVMPRVLRRF------HKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFM 267 (380)
Q Consensus 199 ~wlv~l~ilLla~lla~lv~~~llrrL------~k~a~kt~~~~l~~~~~~~~~~~ddsll~aL~~PlrllI~~i 267 (380)
.|..+++.+++|+++++++.|+.-+.. .+-.++. ..+-..|...+.+.+.....++=-+-
T Consensus 2 ~W~~a~i~livG~iiG~~~~R~~~~~~~~q~~le~eLe~~---------k~ele~YkqeV~~HFa~TA~Ll~~L~ 67 (134)
T PRK11677 2 TWEYALIGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKN---------KAELEEYRQELVSHFARSAELLDTMA 67 (134)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378888899999999999987654432 2222222 11233466677777877777665543
No 25
>PRK13892 conjugal transfer protein TrbC; Provisional
Probab=42.69 E-value=1.1e+02 Score=27.47 Aligned_cols=64 Identities=11% Similarity=0.249 Sum_probs=46.6
Q ss_pred Ccch---HHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016947 246 VPYE---KSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNV 309 (380)
Q Consensus 246 ~~~d---dsll~aL~~PlrllI~~ia~~l~~~ll~p~~~~~~~L~~il~illIlil~W~l~Rlv~~~ 309 (380)
-||+ +.+.+.+..|+-..+-++++......+...+....+..+++.+++.+.+......+...+
T Consensus 44 lPWE~pL~~I~~SitGPVA~~isvI~Iv~aG~~LaFGge~~gf~R~li~vVl~lsi~~~A~n~~~~f 110 (134)
T PRK13892 44 LPYESWLTNLRNSVTGPVAFALSIIGIVVAGGILIFGGELNGFFRTLIFIVLVMALLVGAQNMMSTF 110 (134)
T ss_pred CCchhHHHHHHHHhhchHHHHHHHHHHHHhChHhhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4554 468899999999999999888855444454345667788888888877777766665554
No 26
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=41.42 E-value=3.2e+02 Score=26.32 Aligned_cols=39 Identities=10% Similarity=0.166 Sum_probs=18.6
Q ss_pred hhHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 016947 183 LSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRV 221 (380)
Q Consensus 183 v~p~~q~~l~~~~~L~~wlv~l~ilLla~lla~lv~~~l 221 (380)
++.-+..||.++...-..+..++..+++.+..++..+.+
T Consensus 110 Llsgitaff~~nA~~~GlItlll~a~vgGfamy~my~y~ 148 (226)
T COG4858 110 LLSGITAFFQKNAQVYGLITLLLTAVVGGFAMYIMYYYA 148 (226)
T ss_pred HHHHHHHHHhcCCcchhHHHHHHHHHhhhHHHHHHHHHH
Confidence 334444566667555443344444444444444444333
No 27
>PF14348 DUF4400: Domain of unknown function (DUF4400)
Probab=38.98 E-value=3.2e+02 Score=25.26 Aligned_cols=75 Identities=13% Similarity=-0.068 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHH-HHHHHHHHcCCcHHHHHHHHhHHHHHHHHhhhhhhhhc
Q 016947 301 FLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVI-GLMALAEACGVAVQSILTVGGIGGQCLLLATCSLLFLF 379 (380)
Q Consensus 301 ~l~Rlv~~~i~~~l~r~~~~~~d~t~i~~L~rlikvlI~vI-gvl~iL~~lGI~VtsLLAglGIGGIAVGLAAQdtLsNf 379 (380)
.+.-+++.+.+|-+++......++..-..-.+.+..+++.. .+.. .+=+++.+.+..+ ..-+.+|+|.--+.+||
T Consensus 122 ~~~~~vDGl~~R~iRr~~~g~eSp~~~h~a~~~~~~~~~~~~~lyL---~lP~~i~P~~~~l-~~a~llg~av~~t~s~F 197 (198)
T PF14348_consen 122 ALAALVDGLVRRDIRRFGFGRESPFVYHHAKRSVIPLLILPWVLYL---SLPFSIPPNLVPL-PAALLLGLAVWITASNF 197 (198)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHH---HcccccChHHHHH-HHHHHHHHHHHHHHHhc
Confidence 33455666666666654323334555555555555444444 2222 2233343443333 44566666666666665
No 28
>PRK01844 hypothetical protein; Provisional
Probab=36.45 E-value=1.6e+02 Score=23.96 Aligned_cols=27 Identities=19% Similarity=0.453 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 016947 204 VSCYLTGTVLAWVVMPRVLRRFHKYAIQGP 233 (380)
Q Consensus 204 l~ilLla~lla~lv~~~llrrL~k~a~kt~ 233 (380)
++.++++.+++.++. .+.++++.+++|
T Consensus 11 I~~li~G~~~Gff~a---rk~~~k~lk~NP 37 (72)
T PRK01844 11 VVALVAGVALGFFIA---RKYMMNYLQKNP 37 (72)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHCC
Confidence 334444444444443 355677888874
No 29
>PF04367 DUF502: Protein of unknown function (DUF502); InterPro: IPR007462 This entry contains proteins that are predicted to be integral membrane proteins.
Probab=34.20 E-value=2.2e+02 Score=23.92 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCccccCCcchHHHHHHHHHHHH
Q 016947 202 VPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVR 261 (380)
Q Consensus 202 v~l~ilLla~lla~lv~~~llrrL~k~a~kt~~~~l~~~~~~~~~~~ddsll~aL~~Plr 261 (380)
..+++++++.++...+.+.+++++.+...|- |.-+++.+++++-..
T Consensus 4 ~l~~i~~iG~l~~~~~g~~l~~~~e~ll~ri--------------P~v~~iY~~~k~~~~ 49 (108)
T PF04367_consen 4 LLLLIFLIGLLARNYFGKWLLNWLERLLQRI--------------PLVKSIYSSIKQLVE 49 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CchHHHHHHHHHHHH
Confidence 3455667777777777777778877766665 556666666555443
No 30
>PRK10845 colicin V production protein; Provisional
Probab=33.85 E-value=3.6e+02 Score=24.39 Aligned_cols=62 Identities=13% Similarity=0.087 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016947 287 AQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEA 349 (380)
Q Consensus 287 ~~il~illIlil~W~l~Rlv~~~i~~~l~r~~~~~~d~t~i~~L~rlikvlI~vIgvl~iL~~ 349 (380)
......+++++++|++.+++..+.++..+...-...|+ ..-.+-.+++..+++..++.+++.
T Consensus 61 ~~~~af~~iFi~v~~~~~i~~~~l~~l~~~~~Lg~~dr-~lG~ifG~~rg~liv~v~l~~l~~ 122 (162)
T PRK10845 61 RNGIAIAVLFIATLIVGAIVNYVIGQLVEKTGLSGTDR-VLGVCFGALRGVLIVAAILFFLDT 122 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566777888888888877777765422123333 333333445555544444444444
No 31
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=33.22 E-value=1.2e+02 Score=24.07 Aligned_cols=28 Identities=14% Similarity=0.377 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 016947 203 PVSCYLTGTVLAWVVMPRVLRRFHKYAIQGP 233 (380)
Q Consensus 203 ~l~ilLla~lla~lv~~~llrrL~k~a~kt~ 233 (380)
.++.++++.++++++.+ +.++++..++|
T Consensus 3 iilali~G~~~Gff~ar---~~~~k~l~~NP 30 (64)
T PF03672_consen 3 IILALIVGAVIGFFIAR---KYMEKQLKENP 30 (64)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHCC
Confidence 34556666666666653 56677777763
No 32
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=30.68 E-value=3.9e+02 Score=23.81 Aligned_cols=90 Identities=21% Similarity=0.277 Sum_probs=43.3
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhcccccch
Q 016947 246 VPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLH-RWKTNVFTRAMASQSIAGLDR 324 (380)
Q Consensus 246 ~~~ddsll~aL~~PlrllI~~ia~~l~~~ll~p~~~~~~~L~~il~illIlil~W~l~-Rlv~~~i~~~l~r~~~~~~d~ 324 (380)
..+.+.++-.+-.|-.++.++..+...... .+. ..... ......++..+.|+.. -......++.. ..
T Consensus 99 ~~f~~g~~~~~~NPk~il~~~~~~~~~~~~-~~~--~~~~~-~~~~~~~~~~~~w~~~~~~~~~~~~~~~--------~~ 166 (191)
T PF01810_consen 99 KSFLTGFLLNLLNPKAILFWLAVFPQFISP-EYS--STQFL-VFILGIFLGSLLWFLLLALLGSRLRRKF--------SS 166 (191)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhhhcccCc-ccc--HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hh
Confidence 346666777788888877766544442221 111 11111 1122233334445432 11111111111 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016947 325 EKMLALDRISSVGLFVIGLMALA 347 (380)
Q Consensus 325 t~i~~L~rlikvlI~vIgvl~iL 347 (380)
.....+.++...+++.+++.++.
T Consensus 167 ~~~~~i~~~~g~~li~~av~l~~ 189 (191)
T PF01810_consen 167 RRIRWINRISGLLLIGFAVYLLY 189 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 22337778888888888877654
No 33
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=29.50 E-value=42 Score=29.10 Aligned_cols=11 Identities=0% Similarity=-0.212 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 016947 200 VIVPVSCYLTG 210 (380)
Q Consensus 200 wlv~l~ilLla 210 (380)
|++.+++++++
T Consensus 2 W~l~~iii~~i 12 (130)
T PF12273_consen 2 WVLFAIIIVAI 12 (130)
T ss_pred eeeHHHHHHHH
Confidence 44444333333
No 34
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=28.15 E-value=4.4e+02 Score=24.52 Aligned_cols=7 Identities=0% Similarity=0.040 Sum_probs=3.2
Q ss_pred cccccch
Q 016947 157 SFDKIKD 163 (380)
Q Consensus 157 w~~~~~~ 163 (380)
|..-+++
T Consensus 79 ~~~~ld~ 85 (206)
T PF06570_consen 79 WLMALDN 85 (206)
T ss_pred HHHHHHH
Confidence 4444443
No 35
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.31 E-value=68 Score=27.38 Aligned_cols=18 Identities=39% Similarity=0.410 Sum_probs=10.8
Q ss_pred HHHHHhHHHHHHHHhhhh
Q 016947 357 ILTVGGIGGQCLLLATCS 374 (380)
Q Consensus 357 LLAglGIGGIAVGLAAQd 374 (380)
+++.+||.|...||+.|.
T Consensus 31 ilti~aiVg~i~Gf~~Qq 48 (101)
T KOG4112|consen 31 ILTIGAIVGFIYGFAQQQ 48 (101)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455556666666666664
No 36
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.83 E-value=1.3e+03 Score=28.37 Aligned_cols=51 Identities=14% Similarity=0.103 Sum_probs=32.2
Q ss_pred HHhhCCccccCCCccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 016947 228 YAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAP 278 (380)
Q Consensus 228 ~a~kt~~~~l~~~~~~~~~~~ddsll~aL~~PlrllI~~ia~~l~~~ll~p 278 (380)
+...||.-...-.++++-...|+.+-..++.-+..++.++++..+.....|
T Consensus 908 FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P 958 (1381)
T KOG0054|consen 908 FFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTP 958 (1381)
T ss_pred hcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhH
Confidence 444555555555666676777777777777777777777666665444433
No 37
>PF13726 Na_H_antiport_2: Na+-H+ antiporter family
Probab=25.01 E-value=80 Score=26.47 Aligned_cols=42 Identities=19% Similarity=0.194 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHcCCcH-HHHHHHHhHHHHHHHHhhhhhhhhc
Q 016947 338 LFVIGLMALAEACGVAV-QSILTVGGIGGQCLLLATCSLLFLF 379 (380)
Q Consensus 338 I~vIgvl~iL~~lGI~V-tsLLAglGIGGIAVGLAAQdtLsNf 379 (380)
++.+.++.+|..+-+|+ -+++.++=+||++=|+-.+++++-|
T Consensus 4 viaV~vm~~L~LlR~nVvlalliaalvgGl~~Gl~l~~t~~~~ 46 (88)
T PF13726_consen 4 VIAVLVMIVLSLLRVNVVLALLIAALVGGLVGGLGLGETMSAF 46 (88)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcCCCHHHHHHHH
Confidence 44555666677666775 4788888888888888888877643
No 38
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=24.84 E-value=2.6e+02 Score=25.25 Aligned_cols=12 Identities=25% Similarity=0.099 Sum_probs=5.8
Q ss_pred HHHhHHHHHHHH
Q 016947 359 TVGGIGGQCLLL 370 (380)
Q Consensus 359 AglGIGGIAVGL 370 (380)
+++|++.+|+|.
T Consensus 39 ~~lg~~~lAlg~ 50 (191)
T PF04156_consen 39 FILGIALLALGV 50 (191)
T ss_pred HHHHHHHHHHHH
Confidence 345555555443
No 39
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=24.27 E-value=8.3e+02 Score=25.51 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016947 202 VPVSCYLTGTVLAWVVMPRVLRRFHKYA 229 (380)
Q Consensus 202 v~l~ilLla~lla~lv~~~llrrL~k~a 229 (380)
..+..++++.++.|++.....+++....
T Consensus 34 ~~a~~ll~g~~~l~~~~~~~~~~l~~~l 61 (363)
T COG1377 34 TSAASLLVGFLLLFFFGSYFARRLSGFL 61 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555443
No 40
>PRK00523 hypothetical protein; Provisional
Probab=24.24 E-value=3.5e+02 Score=21.99 Aligned_cols=11 Identities=27% Similarity=0.504 Sum_probs=7.6
Q ss_pred HHHHHHHhhCC
Q 016947 223 RRFHKYAIQGP 233 (380)
Q Consensus 223 rrL~k~a~kt~ 233 (380)
+.++++.+++|
T Consensus 28 k~~~k~l~~NP 38 (72)
T PRK00523 28 KMFKKQIRENP 38 (72)
T ss_pred HHHHHHHHHCc
Confidence 55677887774
No 41
>KOG4016 consensus Synaptic vesicle protein Synaptogyrin involved in regulation of Ca2+-dependent exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.27 E-value=5.8e+02 Score=24.94 Aligned_cols=99 Identities=10% Similarity=0.052 Sum_probs=51.0
Q ss_pred HhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCccccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 016947 191 LDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFV 270 (380)
Q Consensus 191 l~~~~~L~~wlv~l~ilLla~lla~lv~~~llrrL~k~a~kt~~~~l~~~~~~~~~~~ddsll~aL~~PlrllI~~ia~~ 270 (380)
++.++..=...+.++++.+..-+++++.-.-..++..--.|+ +....|.. -.-+--++|++|+.
T Consensus 61 ynrn~~ACsyg~avG~~Afla~~~flvlD~~f~qISsv~~Rk------------raVl~Dl~----~SalwtflwfvGFc 124 (233)
T KOG4016|consen 61 YNRNSNACSYGVAVGVLAFLACLAFLVLDVYFPQISSVKDRK------------RAVLADLG----VSALWAFLWFVGFC 124 (233)
T ss_pred ECCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhH------------HHHHHHHH----HHHHHHHHHHHHHH
Confidence 344555556777777766666666666655444443322222 23344444 44557788999998
Q ss_pred HHH-Hh--hcCch--hHHHHHHHHHHHHHHHHHHHHHHHH
Q 016947 271 QIG-MM--VAPTT--IASQYLAQAWRGAVILSFVWFLHRW 305 (380)
Q Consensus 271 l~~-~l--l~p~~--~~~~~L~~il~illIlil~W~l~Rl 305 (380)
.+. ++ ..|.+ +-..-....+...+.-++.|.....
T Consensus 125 ~l~nqwqvs~p~~~~~~a~saraaIafsffSilsW~~~A~ 164 (233)
T KOG4016|consen 125 FLANQWQVSKPKENPLGAGSARAAIAFSFFSILSWGGQAV 164 (233)
T ss_pred HHHHHhhccCCCCCCcCcchHHHHHHHHHHHHHHHHHHHH
Confidence 854 22 23321 1122223333444455666765443
No 42
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.24 E-value=1.7e+02 Score=22.06 Aligned_cols=31 Identities=19% Similarity=0.403 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016947 197 LRDVIVPVSCYLTGTVLAWVVMPRVLRRFHK 227 (380)
Q Consensus 197 L~~wlv~l~ilLla~lla~lv~~~llrrL~k 227 (380)
++-+++.++.+++|.++++++.-.-..+.++
T Consensus 18 ~pl~l~il~~f~~G~llg~l~~~~~~~~~r~ 48 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWLLSLPSRLRLRR 48 (68)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666777777777777765433333333
No 43
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=22.90 E-value=1.5e+02 Score=26.50 Aligned_cols=33 Identities=3% Similarity=-0.188 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 016947 200 VIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQG 232 (380)
Q Consensus 200 wlv~l~ilLla~lla~lv~~~llrrL~k~a~kt 232 (380)
|...+..++...++.|++.+++++.+.+...++
T Consensus 8 ~~~~~~~~i~Flil~~ll~~~l~~pi~~~l~~R 40 (164)
T PRK14471 8 FGLFFWQTILFLILLLLLAKFAWKPILGAVKER 40 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 333444445555556666667777777776666
No 44
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.64 E-value=1.2e+02 Score=27.26 Aligned_cols=32 Identities=6% Similarity=0.112 Sum_probs=24.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016947 196 YLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHK 227 (380)
Q Consensus 196 ~L~~wlv~l~ilLla~lla~lv~~~llrrL~k 227 (380)
....|..+++.+++|++++++++|+.-+.++.
T Consensus 4 t~~~W~~a~igLvvGi~IG~li~Rlt~~~~k~ 35 (138)
T COG3105 4 TFMTWEYALIGLVVGIIIGALIARLTNRKLKQ 35 (138)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcchhhhh
Confidence 34678889999999999999998655444433
No 45
>PRK13871 conjugal transfer protein TrbC; Provisional
Probab=22.19 E-value=4.9e+02 Score=23.53 Aligned_cols=59 Identities=12% Similarity=0.045 Sum_probs=35.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016947 248 YEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWK 306 (380)
Q Consensus 248 ~ddsll~aL~~PlrllI~~ia~~l~~~ll~p~~~~~~~L~~il~illIlil~W~l~Rlv 306 (380)
..+.+.+.+..|+-..+.++++...............+..++..+++.+.+......+.
T Consensus 40 pLq~I~~SItGPVA~~IavIaIivaG~~liFGg~~~gf~Rrl~~vVlg~~il~gAt~i~ 98 (135)
T PRK13871 40 PLQQIQQSITGPVAGFIALAAVAIAGAMLIFGGELNDFARRLCYVALVGGVLLGATQIV 98 (135)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34578899999998888888877754333333223445566655555544444333333
No 46
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=21.85 E-value=2.7e+02 Score=23.09 Aligned_cols=59 Identities=14% Similarity=0.213 Sum_probs=33.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH----HHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016947 248 YEKSFWGALEDPVRYLITFMAFVQ----IGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKT 307 (380)
Q Consensus 248 ~ddsll~aL~~PlrllI~~ia~~l----~~~ll~p~~~~~~~L~~il~illIlil~W~l~Rlv~ 307 (380)
+.+.+++..++|+..+..+++... ...++.--+ ..+.++.++-++-+...+||.+|..-
T Consensus 7 ~~~~~~~~~~~~~~~~~~ii~~iv~l~v~~~vl~aIn-~iPll~~llElvGlgyt~wF~~ryLL 69 (90)
T PF14159_consen 7 YWGEFFDKYKRPLLTIGAIIAVIVALWVSAAVLDAIN-SIPLLPGLLELVGLGYTGWFVYRYLL 69 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcchHHHHHHHHHHHHhHHHHHHHc
Confidence 344556777778777666443333 222111100 12346677777778888999988653
No 47
>PRK04949 putative sulfate transport protein CysZ; Validated
Probab=20.11 E-value=8.2e+02 Score=23.86 Aligned_cols=18 Identities=6% Similarity=0.231 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 016947 297 SFVWFLHRWKTNVFTRAMASQ 317 (380)
Q Consensus 297 il~W~l~Rlv~~~i~~~l~r~ 317 (380)
.-+|++. ..+.+.-+.|+
T Consensus 172 ~~awll~---~ey~d~~~~r~ 189 (251)
T PRK04949 172 FSAWMMA---IQYCDYPFDNH 189 (251)
T ss_pred HHHHHHH---HHHhHhHHHHC
Confidence 3445443 24445555543
Done!