Query 016947
Match_columns 380
No_of_seqs 203 out of 1243
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 06:25:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016947.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016947hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vv5_A MSCS, small-conductance 99.4 1E-12 3.6E-17 126.3 9.8 94 284-380 26-119 (286)
2 3udc_A Small-conductance mecha 99.2 5.4E-11 1.8E-15 114.2 13.1 59 322-380 60-118 (285)
3 2vv5_A MSCS, small-conductance 77.7 19 0.00064 33.9 11.2 29 248-276 61-89 (286)
4 3udc_A Small-conductance mecha 63.3 97 0.0033 28.9 15.5 69 200-276 20-88 (285)
5 3tx3_A Uncharacterized protein 56.6 1.3E+02 0.0043 28.0 17.3 88 247-349 128-218 (249)
6 4a2n_B Isoprenylcysteine carbo 23.3 3.6E+02 0.012 23.7 8.8 13 295-307 12-24 (194)
7 2kog_A Vesicle-associated memb 16.6 36 0.0012 28.4 0.5 22 158-179 42-63 (119)
8 3hd7_A Vesicle-associated memb 15.6 1.2E+02 0.004 23.9 3.3 35 159-193 15-55 (91)
9 1pi7_A VPU protein, U ORF prot 10.9 3.9E+02 0.013 17.9 4.4 25 202-226 9-33 (36)
10 1hgv_A PH75 inovirus major coa 6.6 2.9E+02 0.01 19.1 2.2 13 360-372 23-35 (46)
No 1
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=99.37 E-value=1e-12 Score=126.28 Aligned_cols=94 Identities=22% Similarity=0.245 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHhH
Q 016947 284 QYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGI 363 (380)
Q Consensus 284 ~~L~~il~illIlil~W~l~Rlv~~~i~~~l~r~~~~~~d~t~i~~L~rlikvlI~vIgvl~iL~~lGI~VtsLLAglGI 363 (380)
.++++++.+++++.++|++.|++..+.++.+.+. +.|++...++.+++++++++++++.+++.+|+++++++|++|+
T Consensus 26 ~~~~~i~~~~~i~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~i~~i~~~~~l~~~gi~~~~l~a~~g~ 102 (286)
T 2vv5_A 26 SYAVNIVAALAIIIVGLIIARMISNAVNRLMISR---KIDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGA 102 (286)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3566778888899999999999999988887664 6788999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhcC
Q 016947 364 GGQCLLLATCSLLFLFH 380 (380)
Q Consensus 364 GGIAVGLAAQdtLsNfF 380 (380)
+|+|+|||+||+++||+
T Consensus 103 ~g~aig~a~q~~l~n~~ 119 (286)
T 2vv5_A 103 AGLVVGLALQGSLSNLA 119 (286)
T ss_dssp HHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999985
No 2
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=99.24 E-value=5.4e-11 Score=114.19 Aligned_cols=59 Identities=12% Similarity=0.117 Sum_probs=55.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHhHHHHHHHHhhhhhhhhcC
Q 016947 322 LDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGQCLLLATCSLLFLFH 380 (380)
Q Consensus 322 ~d~t~i~~L~rlikvlI~vIgvl~iL~~lGI~VtsLLAglGIGGIAVGLAAQdtLsNfF 380 (380)
.++++.+++.+++++++++++++++++.+|+++++++|++|++|+|+|||+||+++||+
T Consensus 60 ~~~tl~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~l~a~~g~~g~aig~a~q~~l~n~~ 118 (285)
T 3udc_A 60 KIDTLTSLTKNAVRYIIYFLAGASILKLFNIDMTSLLAVAGIGSLAIGFGAQNLVKDMI 118 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678889999999999999999999999999999999999999999999999999985
No 3
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=77.74 E-value=19 Score=33.92 Aligned_cols=29 Identities=21% Similarity=0.136 Sum_probs=21.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016947 248 YEKSFWGALEDPVRYLITFMAFVQIGMMV 276 (380)
Q Consensus 248 ~ddsll~aL~~PlrllI~~ia~~l~~~ll 276 (380)
.++.+...+.+-++++++++++..+....
T Consensus 61 ~~~~~~~~~~~i~~~~i~~i~~~~~l~~~ 89 (286)
T 2vv5_A 61 IDATVADFLSALVRYGIIAFTLIAALGRV 89 (286)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677778888899999988887765544
No 4
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=63.28 E-value=97 Score=28.85 Aligned_cols=69 Identities=17% Similarity=0.132 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016947 200 VIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMV 276 (380)
Q Consensus 200 wlv~l~ilLla~lla~lv~~~llrrL~k~a~kt~~~~l~~~~~~~~~~~ddsll~aL~~PlrllI~~ia~~l~~~ll 276 (380)
..+.++.+++...+++.+..++.+++.+...+.. ...+....+.+...+++-++++++++++..+....
T Consensus 20 ~~~~il~~lii~~i~~~i~~~l~~~~~~~~~~~~--------~~~~~~~~~tl~~~~~~~~~~~i~~~~~~~~l~~~ 88 (285)
T 3udc_A 20 FLLDVLKILIIAFIGIKFADFLIYRFYKLYSKSK--------IQLPQRKIDTLTSLTKNAVRYIIYFLAGASILKLF 88 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC--------SSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444466666666555541 01123345677778888899999988887765544
No 5
>3tx3_A Uncharacterized protein involved in cysteine BIOS; structural genomics, PSI-biology, NEW YORK consortium on MEM protein structure, nycomps; HET: LDA; 2.30A {Idiomarina loihiensis}
Probab=56.62 E-value=1.3e+02 Score=28.01 Aligned_cols=88 Identities=11% Similarity=0.124 Sum_probs=38.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHH---HHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 016947 247 PYEKSFWGALEDPVRYLITFMAFVQ---IGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLD 323 (380)
Q Consensus 247 ~~ddsll~aL~~PlrllI~~ia~~l---~~~ll~p~~~~~~~L~~il~illIlil~W~l~Rlv~~~i~~~l~r~~~~~~d 323 (380)
++.+.+++++++-.+.+...+...+ ......|. +.. ++..+.-+|.+. ....++..+++ +.+
T Consensus 128 ~~~~~l~r~l~~~l~~l~~~l~~~l~ll~L~f~IP~------vg~---vl~~~~~~~~lg---~ey~d~~~~r~---~~~ 192 (249)
T 3tx3_A 128 GLFKDIPRTLKREMQKLMYYIPRALGFFLLSLVIPV------IGQ---VLWYIFVCWMMS---IQYLDYPFDNH---KLS 192 (249)
T ss_dssp GGSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT------HHH---HHHHHHHHHHHH---HHHHHHHHHHT---TCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch------HHH---HHHHHHHHHHHH---HHHHHHHHHHc---CCC
Confidence 3344566666666665555433222 11221231 111 233334445443 34556666654 333
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016947 324 REKMLALDRISSVGLFVIGLMALAEA 349 (380)
Q Consensus 324 ~t~i~~L~rlikvlI~vIgvl~iL~~ 349 (380)
....+-..|--+...+..|+.+.+-.
T Consensus 193 ~~~~~~~lr~~r~~~~~fG~~~~ll~ 218 (249)
T 3tx3_A 193 FPRMRSELHQQRSKTLGFGFGVTVLT 218 (249)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33333333334455555555554433
No 6
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=23.34 E-value=3.6e+02 Score=23.66 Aligned_cols=13 Identities=15% Similarity=0.491 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHH
Q 016947 295 ILSFVWFLHRWKT 307 (380)
Q Consensus 295 Ilil~W~l~Rlv~ 307 (380)
+..++|++.|+..
T Consensus 12 ~~~~~~~~ir~~~ 24 (194)
T 4a2n_B 12 VMFIIWVFVRKVY 24 (194)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4466788888743
No 7
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=16.56 E-value=36 Score=28.42 Aligned_cols=22 Identities=32% Similarity=0.305 Sum_probs=16.6
Q ss_pred ccccchhhhcccchhchhhhhh
Q 016947 158 FDKIKDAWKSVVDGVSYTGQKA 179 (380)
Q Consensus 158 ~~~~~~~~~~~~da~~~~~~~~ 179 (380)
+|..++.....+|.+.++|+|.
T Consensus 42 vdeVk~IM~~NIdkvLeRGEkL 63 (119)
T 2kog_A 42 VDEVVDIMRVNVDKVLERDQKL 63 (119)
T ss_dssp HHHHHHHHHHHHHHHHCCCCSS
T ss_pred HHHHHHHHHHHHHHHHHcccHH
Confidence 4555666777888889999984
No 8
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=15.60 E-value=1.2e+02 Score=23.93 Aligned_cols=35 Identities=29% Similarity=0.288 Sum_probs=22.3
Q ss_pred cccchhhhcccchhchhhhhh------hhhhhHHHHHHHhc
Q 016947 159 DKIKDAWKSVVDGVSYTGQKA------KDELSPQIEQLLDA 193 (380)
Q Consensus 159 ~~~~~~~~~~~da~~~~~~~~------~d~v~p~~q~~l~~ 193 (380)
|..++.....+|-+.++|+|. +|++-..-++|-..
T Consensus 15 ~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~ 55 (91)
T 3hd7_A 15 DEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETS 55 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677888899999994 44444444454443
No 9
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=10.95 E-value=3.9e+02 Score=17.88 Aligned_cols=25 Identities=12% Similarity=0.153 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016947 202 VPVSCYLTGTVLAWVVMPRVLRRFH 226 (380)
Q Consensus 202 v~l~ilLla~lla~lv~~~llrrL~ 226 (380)
+.+.++++..++.|.+..+-+|++.
T Consensus 9 valivalIiaIVVWtiv~ieYrk~~ 33 (36)
T 1pi7_A 9 VALVVAIIIAIVVWSIVIIEGRGGK 33 (36)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555655544444433
No 10
>1hgv_A PH75 inovirus major coat protein; virus coat protein, helical virus coat protein, ssDNA viruses, filamentous bacteriophage, thermophiles; 2.4A {Bacteriophage PH75} SCOP: h.1.4.1 PDB: 1hgz_A 1hh0_A
Probab=6.55 E-value=2.9e+02 Score=19.12 Aligned_cols=13 Identities=15% Similarity=0.059 Sum_probs=6.9
Q ss_pred HHhHHHHHHHHhh
Q 016947 360 VGGIGGQCLLLAT 372 (380)
Q Consensus 360 glGIGGIAVGLAA 372 (380)
+.|+..++||+.+
T Consensus 23 gvgvlal~iglsa 35 (46)
T 1hgv_A 23 GVGVLALAIGLSA 35 (46)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cchHHHHHHhHHH
Confidence 4455555666643
Done!