BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016948
(380 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AL5|A Chain A, Crystal Structure Of Human Tyw5
pdb|3AL5|B Chain B, Crystal Structure Of Human Tyw5
pdb|3AL5|C Chain C, Crystal Structure Of Human Tyw5
pdb|3AL5|D Chain D, Crystal Structure Of Human Tyw5
pdb|3AL6|A Chain A, Crystal Structure Of Human Tyw5
pdb|3AL6|B Chain B, Crystal Structure Of Human Tyw5
pdb|3AL6|C Chain C, Crystal Structure Of Human Tyw5
pdb|3AL6|D Chain D, Crystal Structure Of Human Tyw5
Length = 338
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/299 (21%), Positives = 118/299 (39%), Gaps = 83/299 (27%)
Query: 17 GSNSTIERLESPPTPLQFLRDYVSQNKPCIIKNVSLHHQWPAFSLWPHPSYLSKTXXXXX 76
G + + RLE QF++ Q KP +++ + L P S W YLS+
Sbjct: 26 GQHLPVPRLEGVSRE-QFMQHLYPQRKPLVLEGIDLG---PCTSKWT-VDYLSQV----- 75
Query: 77 XXXXXXXXNGRADSLVTLTHPRSGE-ISQCFASAHVERLPFDEALQLVSNSKNGDVVA-- 133
G+ + + + + IS+ F LPFD+ +Q + K+ +
Sbjct: 76 --------GGKKEVKIHVAAVAQMDFISKNFV---YRTLPFDQLVQRAAEEKHKEFFVSE 124
Query: 134 ----YLQQQNDC-------FRDEYSVLGSDCD-----EHIAWATEALGCYPEAVNLWIGN 177
YL+ + R ++ +L D + + + + LW
Sbjct: 125 DEKYYLRSLGEDPRKDVADIRKQFPLLKGDIKFPEFFKEEQFFSSVFRISSPGLQLWT-- 182
Query: 178 QLSETSFHKDHYENLYTVVSGQKHFLLLPPTDVHRMYIRQYPAAHYSYSRVNDVERFTLE 237
H D +NL V+G+K +L P D +Y++ + S V +++
Sbjct: 183 -------HYDVMDNLLIQVTGKKRVVLFSPRDAQYLYLKG------TKSEVLNID----- 224
Query: 238 LEEPVRYVPWCSVNPYPSPETRESEMAKFPLYFNGPKPFECTVNAGEILYLPSMWFHHV 296
NP ++AK+PL F+ + +EC++ AG++L++P++WFH+V
Sbjct: 225 -------------NP---------DLAKYPL-FSKARRYECSLEAGDVLFIPALWFHNV 260
>pdb|1IZ3|A Chain A, Dimeric Structure Of Fih (Factor Inhibiting Hif)
Length = 349
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 30/141 (21%)
Query: 173 LWIGNQLSETSFHKDHYENLYTVVSGQKHFLLLPPTDVHRMYIRQYPAAHYSYSRVNDVE 232
L IG + + T H D +N + + G K +L PP +Y YP H+ R + V+
Sbjct: 187 LLIGXEGNVTPAHYDEQQNFFAQIKGYKRCILFPPDQFECLY--PYP-VHHPCDRQSQVD 243
Query: 233 RFTLELEEPVRYVPWCSVNPYPSPETRESEMAKFPLYFNGPKPFECTVNAGEILYLPSMW 292
+ +P + +FP F +E V G++LY+P W
Sbjct: 244 --------------------FDNP-----DYERFP-NFQNVVGYETVVGPGDVLYIPXYW 277
Query: 293 FHHVRQSPDDNGYTIALNYWY 313
+HH+ +S + G TI +N+WY
Sbjct: 278 WHHI-ESLLNGGITITVNFWY 297
>pdb|1MZE|A Chain A, Human Factor Inhibiting Hif (Fih1)
pdb|1MZF|A Chain A, Human Factor Inhibiting Hif (Fih1) In Complex With
2-Oxoglutarate
Length = 351
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 30/141 (21%)
Query: 173 LWIGNQLSETSFHKDHYENLYTVVSGQKHFLLLPPTDVHRMYIRQYPAAHYSYSRVNDVE 232
L IG + + T H D +N + + G K +L PP +Y YP H+ R + V+
Sbjct: 189 LLIGMEGNVTPAHYDEQQNFFAQIKGYKRCILFPPDQFECLY--PYP-VHHPCDRQSQVD 245
Query: 233 RFTLELEEPVRYVPWCSVNPYPSPETRESEMAKFPLYFNGPKPFECTVNAGEILYLPSMW 292
+ +P + +FP F +E V G++LY+P W
Sbjct: 246 --------------------FDNP-----DYERFP-NFQNVVGYETVVGPGDVLYIPMYW 279
Query: 293 FHHVRQSPDDNGYTIALNYWY 313
+HH+ +S + G TI +N+WY
Sbjct: 280 WHHI-ESLLNGGITITVNFWY 299
>pdb|3KCX|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Clioquinol
pdb|3KCY|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
8-Hydroxyquino
Length = 335
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 30/141 (21%)
Query: 173 LWIGNQLSETSFHKDHYENLYTVVSGQKHFLLLPPTDVHRMYIRQYPAAHYSYSRVNDVE 232
L IG + + T H D +N + + G K +L PP +Y YP H+ R + V+
Sbjct: 173 LLIGMEGNVTPAHYDEQQNFFAQIKGYKRCILFPPDQFECLY--PYP-VHHPCDRQSQVD 229
Query: 233 RFTLELEEPVRYVPWCSVNPYPSPETRESEMAKFPLYFNGPKPFECTVNAGEILYLPSMW 292
+ +P + +FP F +E V G++LY+P W
Sbjct: 230 --------------------FDNP-----DYERFP-NFQNVVGYETVVGPGDVLYIPMYW 263
Query: 293 FHHVRQSPDDNGYTIALNYWY 313
+HH+ +S + G TI +N+WY
Sbjct: 264 WHHI-ESLLNGGITITVNFWY 283
>pdb|1H2K|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Hif-1 Alpha
Fragment Peptide
pdb|1H2L|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Hif-1 Alpha
Fragment Peptide
pdb|1H2M|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Hif-1 Alpha
Fragment Peptide
pdb|1H2N|A Chain A, Factor Inhibiting Hif-1 Alpha
pdb|1YCI|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
N-(Carboxycarbonyl)-D- Phenylalanine
pdb|2CGN|A Chain A, Factor Inhibiting Hif-1 Alpha With Succinate
pdb|2CGO|A Chain A, Factor Inhibiting Hif-1 Alpha With Fumarate
pdb|2W0X|A Chain A, Factor Inhibiting Hif-1 Alpha With Pyridine 2,4
Dicarboxylic Acid
pdb|2WA3|A Chain A, Factor Inhibiting Hif-1 Alpha With 2-(3-Hydroxyphenyl)-2-
Oxoacetic Acid
pdb|2WA4|A Chain A, Factor Inhibiting Hif-1 Alpha With N,3-Dihydroxybenzamide
pdb|3P3N|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Notch 1
Fragment Mouse Notch (1930-1949) Peptide
pdb|3P3P|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Notch 1
Fragment Mouse Notch (1997-2016) Peptide
pdb|3OD4|A Chain A, Crystal Structure Of Factor Inhibiting Hif-1 Alpha
Complexed With Inhibitor
pdb|4B7E|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Consensus
Ankyrin Repeat Domain-leu Peptide (20-mer)
pdb|4B7K|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Consensus
Ankyrin Repeat Domain-ser Peptide (20-mer)
Length = 349
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 30/141 (21%)
Query: 173 LWIGNQLSETSFHKDHYENLYTVVSGQKHFLLLPPTDVHRMYIRQYPAAHYSYSRVNDVE 232
L IG + + T H D +N + + G K +L PP +Y YP H+ R + V+
Sbjct: 187 LLIGMEGNVTPAHYDEQQNFFAQIKGYKRCILFPPDQFECLY--PYP-VHHPCDRQSQVD 243
Query: 233 RFTLELEEPVRYVPWCSVNPYPSPETRESEMAKFPLYFNGPKPFECTVNAGEILYLPSMW 292
+ +P + +FP F +E V G++LY+P W
Sbjct: 244 --------------------FDNP-----DYERFP-NFQNVVGYETVVGPGDVLYIPMYW 277
Query: 293 FHHVRQSPDDNGYTIALNYWY 313
+HH+ +S + G TI +N+WY
Sbjct: 278 WHHI-ESLLNGGITITVNFWY 297
>pdb|2Y0I|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Tankyrase-2
(Tnks2) Fragment Peptide (21-Mer)
pdb|2YC0|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
R-2-Hydroxyglutarate
pdb|2YDE|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
S-2-Hydroxyglutarate
pdb|4AI8|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Daminozide
Length = 352
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 30/141 (21%)
Query: 173 LWIGNQLSETSFHKDHYENLYTVVSGQKHFLLLPPTDVHRMYIRQYPAAHYSYSRVNDVE 232
L IG + + T H D +N + + G K +L PP +Y YP H+ R + V+
Sbjct: 190 LLIGMEGNVTPAHYDEQQNFFAQIKGYKRCILFPPDQFECLY--PYP-VHHPCDRQSQVD 246
Query: 233 RFTLELEEPVRYVPWCSVNPYPSPETRESEMAKFPLYFNGPKPFECTVNAGEILYLPSMW 292
+ +P + +FP F +E V G++LY+P W
Sbjct: 247 --------------------FDNP-----DYERFP-NFQNVVGYETVVGPGDVLYIPMYW 280
Query: 293 FHHVRQSPDDNGYTIALNYWY 313
+HH+ +S + G TI +N+WY
Sbjct: 281 WHHI-ESLLNGGITITVNFWY 300
>pdb|2XUM|A Chain A, Factor Inhibiting Hif (Fih) Q239h Mutant In Complex With
Zn(Ii), Nog And Asp-Substrate Peptide (20-Mer)
Length = 349
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 30/141 (21%)
Query: 173 LWIGNQLSETSFHKDHYENLYTVVSGQKHFLLLPPTDVHRMYIRQYPAAHYSYSRVNDVE 232
L IG + + T H D +N + + G K +L PP +Y YP H+ R + V+
Sbjct: 187 LLIGMEGNVTPAHYDEQQNFFAQIKGYKRCILFPPDQFECLY--PYPV-HHPCDRHSQVD 243
Query: 233 RFTLELEEPVRYVPWCSVNPYPSPETRESEMAKFPLYFNGPKPFECTVNAGEILYLPSMW 292
+ +P+ +FP F +E V G++LY+P W
Sbjct: 244 --------------------FDNPD-----YERFP-NFQNVVGYETVVGPGDVLYIPMYW 277
Query: 293 FHHVRQSPDDNGYTIALNYWY 313
+HH+ +S + G TI +N+WY
Sbjct: 278 WHHI-ESLLNGGITITVNFWY 297
>pdb|4GJZ|A Chain A, Jmjd5 In Complex With 2-Oxoglutarate
Length = 235
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/281 (23%), Positives = 110/281 (39%), Gaps = 62/281 (22%)
Query: 20 STIERLESPPTPLQFLRD-YVSQNKPCIIKNVSLHHQWPAFSLWP--HPSYLSKTXXXXX 76
ST+ RL P LQ R+ ++ +P I+K V+ H WP W + ++
Sbjct: 1 STVPRLHRPS--LQHFREQFLVPGRPVILKGVADH--WPCMQKWSLEYIQEIAGCRTVPV 56
Query: 77 XXXXXXXXNGRADSLVTLTHPRSGEISQCFASAHVERLPFDEALQLVSNSKNGDVVAYLQ 136
+ +L+T+ F S ++ P D + ++ + D + L+
Sbjct: 57 EVGSRYTDEEWSQTLMTVNE---------FISKYIVNEPRD--VGYLAQHQLFDQIPELK 105
Query: 137 QQNDCFRDEYSVLGSDCDEHIAWATEALGCYPEAVNLWIGNQLSETSFHKDHYENLYTVV 196
Q D +Y LG +E I +N W G Q + + H+D +N V
Sbjct: 106 Q--DISIPDYCSLGDGEEEEIT------------INAWFGPQGTISPLHQDPQQNFLVQV 151
Query: 197 SGQKHFLLLPPTDVHRMYIRQYPAAHYSYSRVNDVERFTLELEEPVRYVPWCSVNPYPSP 256
G+K+ L P + +Y H + S+V DVE NP
Sbjct: 152 MGRKYIRLYSPQESGALYPHDTHLLHNT-SQV-DVE------------------NP---- 187
Query: 257 ETRESEMAKFPLYFNGPKPFECTVNAGEILYLPSMWFHHVR 297
++ KFP + P C ++ GEIL++P ++H+VR
Sbjct: 188 -----DLEKFPKFAKAPF-LSCILSPGEILFIPVKYWHYVR 222
>pdb|3D8C|A Chain A, Factor Inhibiting Hif-1 Alpha D201g Mutant In Complex With
Zn(Ii), Alpha-Ketoglutarate And Hif-1 Alpha 19mer
Length = 349
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 30/141 (21%)
Query: 173 LWIGNQLSETSFHKDHYENLYTVVSGQKHFLLLPPTDVHRMYIRQYPAAHYSYSRVNDVE 232
L IG + + T H +N + + G K +L PP +Y YP H+ R + V+
Sbjct: 187 LLIGMEGNVTPAHYGEQQNFFAQIKGYKRCILFPPDQFECLY--PYPV-HHPCDRQSQVD 243
Query: 233 RFTLELEEPVRYVPWCSVNPYPSPETRESEMAKFPLYFNGPKPFECTVNAGEILYLPSMW 292
+ +P+ +FP F +E V G++LY+P W
Sbjct: 244 --------------------FDNPD-----YERFP-NFQNVVGYETVVGPGDVLYIPMYW 277
Query: 293 FHHVRQSPDDNGYTIALNYWY 313
+HH+ +S + G TI +N+WY
Sbjct: 278 WHHI-ESLLNGGITITVNFWY 297
>pdb|2ILM|A Chain A, Factor Inhibiting Hif-1 Alpha D201a Mutant In Complex With
Fe(ii), Alpha-ketoglutarate And Hif-1 Alpha 35mer
Length = 349
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 30/141 (21%)
Query: 173 LWIGNQLSETSFHKDHYENLYTVVSGQKHFLLLPPTDVHRMYIRQYPAAHYSYSRVNDVE 232
L IG + + T H +N + + G K +L PP +Y YP H+ R + V+
Sbjct: 187 LLIGMEGNVTPAHYAEQQNFFAQIKGYKRCILFPPDQFECLY--PYPV-HHPCDRQSQVD 243
Query: 233 RFTLELEEPVRYVPWCSVNPYPSPETRESEMAKFPLYFNGPKPFECTVNAGEILYLPSMW 292
+ +P+ +FP F +E V G++LY+P W
Sbjct: 244 --------------------FDNPD-----YERFP-NFQNVVGYETVVGPGDVLYIPMYW 277
Query: 293 FHHVRQSPDDNGYTIALNYWY 313
+HH+ +S + G TI +N+WY
Sbjct: 278 WHHI-ESLLNGGITITVNFWY 297
>pdb|4GJY|A Chain A, Jmjd5 In Complex With N-Oxalylglycine
Length = 235
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/281 (23%), Positives = 109/281 (38%), Gaps = 62/281 (22%)
Query: 20 STIERLESPPTPLQFLRD-YVSQNKPCIIKNVSLHHQWPAFSLWP--HPSYLSKTXXXXX 76
ST+ RL P LQ R+ ++ +P I+K V+ H WP W + ++
Sbjct: 1 STVPRLHRPS--LQHFREQFLVPGRPVILKGVADH--WPCXQKWSLEYIQEIAGCRTVPV 56
Query: 77 XXXXXXXXNGRADSLVTLTHPRSGEISQCFASAHVERLPFDEALQLVSNSKNGDVVAYLQ 136
+ +L T+ F S ++ P D + ++ + D + L+
Sbjct: 57 EVGSRYTDEEWSQTLXTVNE---------FISKYIVNEPRD--VGYLAQHQLFDQIPELK 105
Query: 137 QQNDCFRDEYSVLGSDCDEHIAWATEALGCYPEAVNLWIGNQLSETSFHKDHYENLYTVV 196
Q D +Y LG +E I +N W G Q + + H+D +N V
Sbjct: 106 Q--DISIPDYCSLGDGEEEEIT------------INAWFGPQGTISPLHQDPQQNFLVQV 151
Query: 197 SGQKHFLLLPPTDVHRMYIRQYPAAHYSYSRVNDVERFTLELEEPVRYVPWCSVNPYPSP 256
G+K+ L P + +Y H + S+V DVE NP
Sbjct: 152 XGRKYIRLYSPQESGALYPHDTHLLHNT-SQV-DVE------------------NP---- 187
Query: 257 ETRESEMAKFPLYFNGPKPFECTVNAGEILYLPSMWFHHVR 297
++ KFP + P C ++ GEIL++P ++H+VR
Sbjct: 188 -----DLEKFPKFAKAPF-LSCILSPGEILFIPVKYWHYVR 222
>pdb|4AAP|A Chain A, Crystal Structure Of Jmjd5 Domain Of Human Lysine-Specific
Demethylase 8 (Kdm8) In Complex With N-Oxalylglycine
(Nog)
pdb|4AAP|B Chain B, Crystal Structure Of Jmjd5 Domain Of Human Lysine-Specific
Demethylase 8 (Kdm8) In Complex With N-Oxalylglycine
(Nog)
Length = 239
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 109/280 (38%), Gaps = 62/280 (22%)
Query: 21 TIERLESPPTPLQFLRD-YVSQNKPCIIKNVSLHHQWPAFSLWP--HPSYLSKTXXXXXX 77
T+ RL P LQ R+ ++ +P I+K V+ H WP W + ++
Sbjct: 6 TVPRLHRPS--LQHFREQFLVPGRPVILKGVADH--WPCMQKWSLEYIQEIAGCRTVPVE 61
Query: 78 XXXXXXXNGRADSLVTLTHPRSGEISQCFASAHVERLPFDEALQLVSNSKNGDVVAYLQQ 137
+ +L+T+ F S ++ P D + ++ + D + L+Q
Sbjct: 62 VGSRYTDEEWSQTLMTVNE---------FISKYIVNEPRD--VGYLAQHQLFDQIPELKQ 110
Query: 138 QNDCFRDEYSVLGSDCDEHIAWATEALGCYPEAVNLWIGNQLSETSFHKDHYENLYTVVS 197
D +Y LG +E I +N W G Q + + H+D +N V
Sbjct: 111 --DISIPDYCSLGDGEEEEIT------------INAWFGPQGTISPLHQDPQQNFLVQVM 156
Query: 198 GQKHFLLLPPTDVHRMYIRQYPAAHYSYSRVNDVERFTLELEEPVRYVPWCSVNPYPSPE 257
G+K+ L P + +Y H + S+V DVE NP
Sbjct: 157 GRKYIRLYSPQESGALYPHDTHLLHNT-SQV-DVE------------------NP----- 191
Query: 258 TRESEMAKFPLYFNGPKPFECTVNAGEILYLPSMWFHHVR 297
++ KFP + P C ++ GEIL++P ++H+VR
Sbjct: 192 ----DLEKFPKFAKAPF-LSCILSPGEILFIPVKYWHYVR 226
>pdb|3UYJ|A Chain A, Crystal Structure Of Jmjd5 Catalytic Core Domain In
Complex With Nickle And Alpha-Kg
pdb|3UYJ|B Chain B, Crystal Structure Of Jmjd5 Catalytic Core Domain In
Complex With Nickle And Alpha-Kg
Length = 248
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 64/281 (22%), Positives = 109/281 (38%), Gaps = 62/281 (22%)
Query: 20 STIERLESPPTPLQFLRD-YVSQNKPCIIKNVSLHHQWPAFSLWP--HPSYLSKTXXXXX 76
T+ RL P LQ R+ ++ +P I+K V+ H WP W + ++
Sbjct: 14 KTVPRLHRPS--LQHFREQFLVPGRPVILKGVADH--WPCMQKWSLEYIQEIAGCRTVPV 69
Query: 77 XXXXXXXXNGRADSLVTLTHPRSGEISQCFASAHVERLPFDEALQLVSNSKNGDVVAYLQ 136
+ +L+T+ F S ++ P D + ++ + D + L+
Sbjct: 70 EVGSRYTDEEWSQTLMTVNE---------FISKYIVNEPRD--VGYLAQHQLFDQIPELK 118
Query: 137 QQNDCFRDEYSVLGSDCDEHIAWATEALGCYPEAVNLWIGNQLSETSFHKDHYENLYTVV 196
Q D +Y LG +E I +N W G Q + + H+D +N V
Sbjct: 119 Q--DISIPDYCSLGDGEEEEIT------------INAWFGPQGTISPLHQDPQQNFLVQV 164
Query: 197 SGQKHFLLLPPTDVHRMYIRQYPAAHYSYSRVNDVERFTLELEEPVRYVPWCSVNPYPSP 256
G+K+ L P + +Y H + S+V DVE NP
Sbjct: 165 MGRKYIRLYSPQESGALYPHDTHLLHNT-SQV-DVE------------------NP---- 200
Query: 257 ETRESEMAKFPLYFNGPKPFECTVNAGEILYLPSMWFHHVR 297
++ KFP + P C ++ GEIL++P ++H+VR
Sbjct: 201 -----DLEKFPKFAKAPF-LSCILSPGEILFIPVKYWHYVR 235
>pdb|3KV5|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With N-Oxalylglycine
pdb|3KV5|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With N-Oxalylglycine
pdb|3KV6|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With Alpha-Ketoglutarate
pdb|3KV6|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With Alpha-Ketoglutarate
Length = 488
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 47/131 (35%), Gaps = 45/131 (34%)
Query: 175 IGNQLSETSFHKDHYEN--LYTVVSGQKHFLLLPPTDVHRMYIRQYPAAHYSYSRVNDVE 232
+G Q S T FH D Y V+ G+K F L+ PTD
Sbjct: 272 MGVQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTD----------------------- 308
Query: 233 RFTLELEEPVRYVPWCSVNPYPSPETRESEMAKFPLYFNGP--KPFECTVNAGEILYLPS 290
E RY W S +SE ++F K ++C V G L++P+
Sbjct: 309 ------ENLARYESW-------SSSVTQSE-----VFFGDKVDKCYKCVVKQGHTLFVPT 350
Query: 291 MWFHHVRQSPD 301
W H V S D
Sbjct: 351 GWIHAVLTSQD 361
>pdb|3KV9|A Chain A, Structure Of Kiaa1718 Jumonji Domain
pdb|3KVA|A Chain A, Structure Of Kiaa1718 Jumonji Domain In Complex With
Alpha- Ketoglutarate
pdb|3KVB|A Chain A, Structure Of Kiaa1718 Jumonji Domain In Complex With N-
Oxalylglycine
pdb|3U78|A Chain A, E67-2 Selectively Inhibits Kiaa1718, A Human Histone H3
Lysine 9 Jumonji Demethylase
Length = 397
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 47/131 (35%), Gaps = 45/131 (34%)
Query: 175 IGNQLSETSFHKDHYEN--LYTVVSGQKHFLLLPPTDVHRMYIRQYPAAHYSYSRVNDVE 232
+G Q S T FH D Y V+ G+K F L+ PTD
Sbjct: 181 MGVQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTD----------------------- 217
Query: 233 RFTLELEEPVRYVPWCSVNPYPSPETRESEMAKFPLYFNGP--KPFECTVNAGEILYLPS 290
E RY W S +SE ++F K ++C V G L++P+
Sbjct: 218 ------ENLARYESWSS-------SVTQSE-----VFFGDKVDKCYKCVVKQGHTLFVPT 259
Query: 291 MWFHHVRQSPD 301
W H V S D
Sbjct: 260 GWIHAVLTSQD 270
>pdb|2P9B|A Chain A, Crystal Structure Of Putative Prolidase From
Bifidobacterium Longum
Length = 458
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 302 DNGYTIALNY--WYDMQFDIKYAYFNFLQSLHFKAPCDPTLLEIDYEDSRPNASICNSRE 359
D G T Y W +++ + YA F+ ++LH + ++L +D E + + S +
Sbjct: 345 DTGXTFVPQYATWRELELLVAYAGFSPAEALHAATAVNASILGVDAETG--SLEVGKSAD 402
Query: 360 KLFADASSLNEL 371
L +A+ L++L
Sbjct: 403 LLVLNANPLDDL 414
>pdb|3K3N|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Human
Phf8
pdb|3K3O|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Human
Phf8 Complexed With Alpha-Ketoglutarate
Length = 371
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 274 KPFECTVNAGEILYLPSMWFHHV 296
K ++C+V G+ L++P+ W H V
Sbjct: 215 KCYKCSVKQGQTLFIPTGWIHAV 237
>pdb|4DO0|A Chain A, Crystal Structure Of Human Phf8 In Complex With Daminozide
Length = 374
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 274 KPFECTVNAGEILYLPSMWFHHV 296
K ++C+V G+ L++P+ W H V
Sbjct: 226 KCYKCSVKQGQTLFIPTGWIHAV 248
>pdb|2WWU|A Chain A, Crystal Structure Of The Catalytic Domain Of Phd Finger
Protein 8
Length = 371
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 274 KPFECTVNAGEILYLPSMWFHHV 296
K ++C+V G+ L++P+ W H V
Sbjct: 223 KCYKCSVKQGQTLFIPTGWIHAV 245
>pdb|3KV4|A Chain A, Structure Of Phf8 In Complex With Histone H3
Length = 447
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 274 KPFECTVNAGEILYLPSMWFHHV 296
K ++C+V G+ L++P+ W H V
Sbjct: 299 KCYKCSVKQGQTLFIPTGWIHAV 321
>pdb|1SGF|A Chain A, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth
Factor With Four Binding Proteins (serine Proteinases)
pdb|1SGF|X Chain X, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth
Factor With Four Binding Proteins (serine Proteinases)
Length = 240
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 189 YENLYTVVSGQKHFLLLPPTDVHRMYIRQYPAAHYSYSRVND 230
Y + Y V G+ +FL P+D HR+ + P ++ S +N+
Sbjct: 46 YNDKYQVWLGKNNFLEDEPSDQHRLVSKAIPHPDFNMSLLNE 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,961,131
Number of Sequences: 62578
Number of extensions: 494836
Number of successful extensions: 916
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 878
Number of HSP's gapped (non-prelim): 42
length of query: 380
length of database: 14,973,337
effective HSP length: 101
effective length of query: 279
effective length of database: 8,652,959
effective search space: 2414175561
effective search space used: 2414175561
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)