Query 016948
Match_columns 380
No_of_seqs 194 out of 1353
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 04:16:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016948.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016948hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2508 Predicted phospholipas 100.0 9.4E-54 2E-58 402.4 19.1 320 2-336 6-330 (437)
2 PF13621 Cupin_8: Cupin-like d 100.0 6.7E-47 1.5E-51 354.2 16.3 244 31-318 1-250 (251)
3 KOG2130 Phosphatidylserine-spe 100.0 3.1E-35 6.7E-40 273.2 13.9 238 21-317 53-302 (407)
4 KOG2132 Uncharacterized conser 100.0 3.4E-33 7.5E-38 261.8 4.7 221 21-300 128-350 (355)
5 KOG2131 Uncharacterized conser 99.9 2.4E-22 5.1E-27 190.9 7.0 242 18-325 26-313 (427)
6 COG2850 Uncharacterized conser 99.6 1.3E-14 2.9E-19 139.3 11.1 202 27-313 13-214 (383)
7 PF08007 Cupin_4: Cupin superf 99.5 7.8E-14 1.7E-18 136.2 11.8 96 167-311 112-209 (319)
8 KOG3706 Uncharacterized conser 99.4 3.2E-13 7E-18 132.7 5.3 153 162-368 311-476 (629)
9 PF02373 JmjC: JmjC domain, hy 99.2 7.2E-12 1.6E-16 103.4 4.4 110 172-311 1-114 (114)
10 KOG1633 F-box protein JEMMA an 98.5 2.6E-07 5.7E-12 98.7 7.6 158 111-313 62-231 (776)
11 KOG1356 Putative transcription 98.0 8.1E-07 1.8E-11 93.5 -0.3 39 272-312 795-833 (889)
12 KOG2132 Uncharacterized conser 97.5 4.9E-05 1.1E-09 72.8 1.8 111 176-316 181-292 (355)
13 COG2140 Thermophilic glucose-6 97.3 0.0016 3.5E-08 59.1 9.3 74 177-316 88-164 (209)
14 smart00558 JmjC A domain famil 96.6 0.0014 3.1E-08 47.2 2.2 30 169-198 26-57 (57)
15 PF00190 Cupin_1: Cupin; Inte 96.3 0.01 2.2E-07 51.1 6.1 68 177-301 42-109 (144)
16 PF07883 Cupin_2: Cupin domain 95.6 0.049 1.1E-06 40.2 6.5 25 277-301 38-62 (71)
17 PRK04190 glucose-6-phosphate i 95.5 0.11 2.4E-06 47.1 9.7 37 275-313 119-155 (191)
18 TIGR03037 anthran_nbaC 3-hydro 95.3 0.083 1.8E-06 46.3 7.8 65 171-300 30-94 (159)
19 PF06560 GPI: Glucose-6-phosph 95.2 0.028 6.2E-07 50.4 4.7 45 274-321 108-152 (182)
20 TIGR03404 bicupin_oxalic bicup 95.1 0.13 2.7E-06 51.5 9.6 26 276-301 289-314 (367)
21 PRK13264 3-hydroxyanthranilate 94.8 0.13 2.8E-06 45.9 7.5 65 171-300 36-100 (177)
22 COG1917 Uncharacterized conser 94.0 0.42 9.2E-06 40.1 8.9 71 171-310 45-116 (131)
23 smart00835 Cupin_1 Cupin. This 92.9 0.87 1.9E-05 39.1 9.2 27 275-301 74-100 (146)
24 KOG2508 Predicted phospholipas 92.6 0.23 5.1E-06 48.6 5.6 52 264-316 350-404 (437)
25 TIGR03404 bicupin_oxalic bicup 92.5 0.69 1.5E-05 46.3 9.2 25 276-300 110-134 (367)
26 COG4101 Predicted mannose-6-ph 92.4 0.15 3.2E-06 42.2 3.5 26 276-301 88-113 (142)
27 COG0662 {ManC} Mannose-6-phosp 92.0 0.27 5.8E-06 41.4 4.8 25 276-300 75-99 (127)
28 PF02041 Auxin_BP: Auxin bindi 91.9 1.5 3.1E-05 38.0 9.0 76 170-305 43-120 (167)
29 TIGR02272 gentisate_1_2 gentis 91.3 0.7 1.5E-05 45.6 7.5 26 276-301 120-145 (335)
30 PF06052 3-HAO: 3-hydroxyanthr 90.9 0.86 1.9E-05 39.4 6.7 68 169-301 33-100 (151)
31 COG1898 RfbC dTDP-4-dehydrorha 89.9 2.2 4.7E-05 38.1 8.7 89 169-319 45-137 (173)
32 TIGR01221 rmlC dTDP-4-dehydror 88.7 3.3 7E-05 37.1 8.9 88 169-318 44-136 (176)
33 PF00908 dTDP_sugar_isom: dTDP 85.3 9 0.0002 34.3 9.8 75 169-301 43-123 (176)
34 PF05523 FdtA: WxcM-like, C-te 84.1 1.7 3.7E-05 36.8 4.5 39 276-318 76-115 (131)
35 PF05899 Cupin_3: Protein of u 83.1 0.82 1.8E-05 34.7 1.9 19 274-292 42-60 (74)
36 PF13759 2OG-FeII_Oxy_5: Putat 81.7 1.8 3.8E-05 34.7 3.5 38 273-310 63-101 (101)
37 PRK13290 ectC L-ectoine syntha 80.1 1.8 3.8E-05 36.5 3.1 24 276-299 75-98 (125)
38 KOG0958 DNA damage-responsive 77.8 1.8 3.9E-05 45.9 2.9 105 169-300 173-283 (690)
39 COG3450 Predicted enzyme of th 77.8 1.8 3.8E-05 36.1 2.3 22 275-296 81-102 (116)
40 PRK09943 DNA-binding transcrip 77.7 3.8 8.1E-05 36.6 4.7 27 275-301 145-171 (185)
41 TIGR02466 conserved hypothetic 77.4 3 6.5E-05 38.1 4.0 38 276-313 162-200 (201)
42 KOG2107 Uncharacterized conser 77.4 2.5 5.3E-05 37.2 3.2 28 273-300 113-140 (179)
43 PF01050 MannoseP_isomer: Mann 76.9 5.2 0.00011 34.9 5.2 26 276-301 102-127 (151)
44 PF03079 ARD: ARD/ARD' family; 74.5 3.3 7.1E-05 36.4 3.3 25 275-299 114-138 (157)
45 PF09313 DUF1971: Domain of un 74.2 21 0.00046 27.8 7.4 27 275-301 49-75 (82)
46 PLN00212 glutelin; Provisional 74.2 10 0.00022 39.5 7.2 26 274-299 391-416 (493)
47 PF02311 AraC_binding: AraC-li 74.1 5.5 0.00012 32.3 4.5 25 276-300 41-65 (136)
48 PF07385 DUF1498: Protein of u 72.3 10 0.00023 35.0 6.0 89 170-300 88-178 (225)
49 PRK15457 ethanolamine utilizat 69.1 4.2 9.2E-05 37.8 2.8 26 273-298 190-215 (233)
50 PRK05467 Fe(II)-dependent oxyg 67.5 7.5 0.00016 36.2 4.2 40 275-316 140-179 (226)
51 PF13640 2OG-FeII_Oxy_3: 2OG-F 67.2 6.1 0.00013 31.1 3.1 33 280-313 66-99 (100)
52 TIGR03214 ura-cupin putative a 66.8 6.1 0.00013 37.5 3.6 27 275-301 217-243 (260)
53 PRK15131 mannose-6-phosphate i 66.3 6.8 0.00015 39.6 3.9 23 276-298 237-259 (389)
54 PF06249 EutQ: Ethanolamine ut 66.1 4.9 0.00011 35.1 2.5 20 274-293 111-130 (152)
55 PF05995 CDO_I: Cysteine dioxy 65.3 33 0.00072 30.4 7.8 37 276-313 127-163 (175)
56 PF15138 Syncollin: Syncollin 65.3 5.8 0.00012 32.2 2.5 43 272-316 31-74 (112)
57 PLN00212 glutelin; Provisional 65.1 34 0.00073 35.7 8.7 24 278-301 150-173 (493)
58 COG1482 ManA Phosphomannose is 64.4 5.2 0.00011 39.0 2.6 24 276-299 158-181 (312)
59 TIGR01479 GMP_PMI mannose-1-ph 63.7 9.9 0.00021 39.3 4.7 27 275-301 414-440 (468)
60 PRK11171 hypothetical protein; 63.5 12 0.00026 35.7 4.8 35 276-310 101-135 (266)
61 TIGR03214 ura-cupin putative a 63.4 13 0.00027 35.4 5.0 26 276-301 98-123 (260)
62 PLN02288 mannose-6-phosphate i 60.5 7.3 0.00016 39.4 2.9 23 277-299 252-274 (394)
63 TIGR00218 manA mannose-6-phosp 60.1 4.6 0.0001 39.2 1.4 21 276-296 151-171 (302)
64 PRK15460 cpsB mannose-1-phosph 59.4 14 0.00031 38.3 4.9 35 275-309 423-457 (478)
65 COG4766 EutQ Ethanolamine util 54.7 8.6 0.00019 33.4 1.9 23 274-296 134-156 (176)
66 TIGR03027 pepcterm_export puta 53.1 8.1 0.00018 33.9 1.6 18 276-293 148-165 (165)
67 COG5285 Protein involved in bi 48.9 44 0.00094 32.4 5.9 27 274-300 191-217 (299)
68 PF12852 Cupin_6: Cupin 47.7 15 0.00034 32.5 2.6 26 276-301 55-80 (186)
69 COG3435 Gentisate 1,2-dioxygen 46.3 47 0.001 32.3 5.6 25 276-300 131-155 (351)
70 COG4297 Uncharacterized protei 45.9 18 0.00038 31.0 2.4 45 272-318 81-125 (163)
71 COG5553 Predicted metal-depend 45.5 64 0.0014 28.5 5.9 32 273-314 126-157 (191)
72 smart00702 P4Hc Prolyl 4-hydro 43.3 30 0.00066 30.3 3.8 38 275-314 138-178 (178)
73 PRK11171 hypothetical protein; 43.3 42 0.0009 31.9 4.9 27 274-300 221-247 (266)
74 COG3822 ABC-type sugar transpo 41.4 77 0.0017 28.7 5.9 28 273-300 150-177 (225)
75 TIGR02297 HpaA 4-hydroxyphenyl 41.1 30 0.00065 32.6 3.6 34 276-309 62-95 (287)
76 PRK10296 DNA-binding transcrip 40.5 45 0.00097 31.3 4.7 24 276-299 61-84 (278)
77 TIGR02272 gentisate_1_2 gentis 39.0 1.5E+02 0.0033 29.3 8.2 24 276-299 288-311 (335)
78 PRK13501 transcriptional activ 35.7 39 0.00085 32.1 3.5 26 275-300 55-80 (290)
79 PF01238 PMI_typeI: Phosphoman 34.7 25 0.00055 35.2 2.1 23 277-299 251-273 (373)
80 KOG3995 3-hydroxyanthranilate 34.3 86 0.0019 28.9 5.1 31 170-200 34-64 (279)
81 COG1791 Uncharacterized conser 34.1 1.9E+02 0.004 25.9 7.0 40 274-315 116-155 (181)
82 TIGR03028 EpsE polysaccharide 34.0 22 0.00047 33.2 1.4 15 279-293 225-239 (239)
83 PRK13502 transcriptional activ 34.0 44 0.00095 31.5 3.5 25 276-300 56-80 (282)
84 COG3615 TehB Uncharacterized p 30.5 81 0.0018 25.3 3.8 36 276-314 62-97 (99)
85 PRK13500 transcriptional activ 29.6 66 0.0014 31.1 4.0 26 275-300 85-110 (312)
86 PF05118 Asp_Arg_Hydrox: Aspar 29.2 81 0.0018 27.5 4.1 37 276-312 124-160 (163)
87 PF08007 Cupin_4: Cupin superf 29.0 36 0.00077 33.3 2.0 22 31-53 1-22 (319)
88 PRK10572 DNA-binding transcrip 26.0 1.1E+02 0.0024 28.8 4.8 26 276-301 67-92 (290)
89 TIGR02451 anti_sig_ChrR anti-s 24.2 66 0.0014 29.6 2.7 31 279-309 164-194 (215)
90 COG3128 PiuC Uncharacterized i 22.8 1.1E+02 0.0024 27.8 3.7 40 275-316 143-182 (229)
91 PF05721 PhyH: Phytanoyl-CoA d 22.4 71 0.0015 27.7 2.6 26 273-298 177-202 (211)
92 PF11699 CENP-C_C: Mif2/CENP-C 21.7 1.3E+02 0.0027 23.6 3.5 26 276-301 51-76 (85)
No 1
>KOG2508 consensus Predicted phospholipase [Lipid transport and metabolism]
Probab=100.00 E-value=9.4e-54 Score=402.38 Aligned_cols=320 Identities=41% Similarity=0.691 Sum_probs=289.4
Q ss_pred hHHHHHHHHhhhccCCCCCcceeeCCCCCHHHHHHHhhcCCCcEEEECCCCCCCCccccCCCChhhhHhhcCCCCcEEEE
Q 016948 2 QEVKKLWDEVRELSLGSNSTIERLESPPTPLQFLRDYVSQNKPCIIKNVSLHHQWPAFSLWPHPSYLSKTLSSSPPVSVH 81 (380)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~V~rv~~~~s~~~F~~~yv~~~~PvVi~g~~~~~~WpA~~~Wt~~~yL~~~~G~~~~V~v~ 81 (380)
+|++.|++++|||.+|. .|.+++..||+.+|.++|+.+++||||+.++.+ |||+++|+.++||.+.+|+. .|.|.
T Consensus 6 ~e~~~llre~relcvp~--~v~~lD~~Ptpl~Fyr~fvs~n~PvIIrkAL~h--Wpal~lWs~p~Yl~~algd~-vvsva 80 (437)
T KOG2508|consen 6 TEYKGLLREVRELCVPV--LVNLLDLTPTPLDFYRKFVSTNTPVIIRKALPH--WPALKLWSQPDYLLSALGDI-VVSVA 80 (437)
T ss_pred HHHHhhhHHHhhccccc--ccccccCCCchHHHHHhhhcCCCcEEEeccccc--CchhhccCchHHHHHhccCe-EEEEE
Confidence 46888999999999999 999999889999999999999999999999999 99999999988999999999 99999
Q ss_pred ecCCCCcc-cccccCCCCCCcccccccccccccCChHHHHHHHHccCCCCcccccccccccchhhhhhhcccccc-cchh
Q 016948 82 LSPNGRAD-SLVTLTHPRSGEISQCFASAHVERLPFDEALQLVSNSKNGDVVAYLQQQNDCFRDEYSVLGSDCDE-HIAW 159 (380)
Q Consensus 82 ~~~~~~~d-~~~~~~~~~~g~~~~~f~~~~~~~m~~~efl~~~~~~~~~~~~~Yl~~~~~~l~~e~p~L~~Di~~-~ip~ 159 (380)
++|+|.+| ++.. | ...|..+..++|++++-+..+.....+....|++++|++++.++|++..|+.- +++|
T Consensus 81 itPngyadgav~~------g--~e~f~~pae~KlklsevL~vl~~~~~~~~Vly~qkQ~snl~~elp~la~Dl~~~d~~w 152 (437)
T KOG2508|consen 81 ITPNGYADGAVMS------G--NEMFIKPAEQKLKLSEVLYVLTQYDESNEVLYGQKQNSNLVKELPPLATDLLLTDFSW 152 (437)
T ss_pred eCCCCcccccccc------C--cceeechhhhhccchhhheehhcccCCCceeehhhhcccccccccccccccccccccc
Confidence 99999887 3221 1 24555666679999999999998888889999999999999999999999985 8999
Q ss_pred hhhhhCCCCCceEEEecCCCCcccccccCCCceEEEEeeeEEEEEeCCCCcCCCcccccCCccccccccCCCcceeee--
Q 016948 160 ATEALGCYPEAVNLWIGNQLSETSFHKDHYENLYTVVSGQKHFLLLPPTDVHRMYIRQYPAAHYSYSRVNDVERFTLE-- 237 (380)
Q Consensus 160 ~~~~~~~~~~~~~lwiG~~gs~t~lH~D~~~n~~~qv~G~K~~~L~pP~~~~~Ly~~~~p~~~~~~~~~~~~~~~~~~-- 237 (380)
+.++||+.|..+|||||...++|++|.|+|+|++|+|+|.|+|+|+||.+.++|+..-||.+.|++++ +.+.|+++
T Consensus 153 a~eafgk~PdavNlWiG~~~avTSlHkDhyENlYaViSGeKhFvlipP~d~~~lp~eiyp~g~ysy~~--e~g~fk~e~~ 230 (437)
T KOG2508|consen 153 APEAFGKVPDAVNLWIGKSEAVTSLHKDHYENLYAVISGEKHFVLIPPDDANQLPLEIYPNGLYSYEG--EDGPFKSEGL 230 (437)
T ss_pred cHHHhCCChhheeeeecccccccccccccccceEEEEeccceEEEeCcccccccceeecCCcceeeec--CCCceeeccc
Confidence 99999999999999999999999999999999999999999999999999999998889999998863 67888887
Q ss_pred ecCCccccc-ccccCCCCCccccchhhccCCCCCCCCCCeEEEEcCCCeEeeCCCceeeeeecCCCCCeEEEEEeeecCC
Q 016948 238 LEEPVRYVP-WCSVNPYPSPETRESEMAKFPLYFNGPKPFECTVNAGEILYLPSMWFHHVRQSPDDNGYTIALNYWYDMQ 316 (380)
Q Consensus 238 ~d~p~~~~~-~s~vd~~~~~~~~~~d~~~fP~f~~~~~~~~~~L~pGD~LfiP~gWwH~V~~l~d~~~~sIsvn~w~~~~ 316 (380)
.+++...+. |+.+||++|+...+.+..++|.+..+..+..+.+.+|+++|.|..|+|+|.....+.+-.|+||+|++++
T Consensus 231 dEe~~~~a~~~~svd~~~s~~~~a~~~~k~~l~~~~~k~~~~rv~a~~i~~lp~~w~h~~sq~~gd~~~~Iavn~~~d~~ 310 (437)
T KOG2508|consen 231 DEEDAAIAKTWFSVDPIGSPKELAVPQEKIPLLEAEYKPEMDRVLAGQILYLPEDWFHHVSQVGGDPESDIAVNEWYDIE 310 (437)
T ss_pred chhhhhhcceeeeecccCCHHHhccchhhCccccccccceeeeeeccccccChhhhhhhccccCCCccceeEEeeecccc
Confidence 556655554 9999999999888889999999987788999999999999999999999999977678899999999999
Q ss_pred CChhhHHHHHHHHhcccCCC
Q 016948 317 FDIKYAYFNFLQSLHFKAPC 336 (380)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~ 336 (380)
+|.+|+|+++|+.+-.+...
T Consensus 311 ~ds~~~~~~~L~d~~tk~S~ 330 (437)
T KOG2508|consen 311 ADSLYDYKPELPDHFTKVSV 330 (437)
T ss_pred ccccchhHHHHHHHhhhhhc
Confidence 99999999999988766533
No 2
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=100.00 E-value=6.7e-47 Score=354.25 Aligned_cols=244 Identities=31% Similarity=0.658 Sum_probs=177.2
Q ss_pred HHHHHHHhhcCCCcEEEECCCCCCCCccccCCCC----hhhhHhhcCCCCcEEEEecCCCCcccccccCCCCCCcccccc
Q 016948 31 PLQFLRDYVSQNKPCIIKNVSLHHQWPAFSLWPH----PSYLSKTLSSSPPVSVHLSPNGRADSLVTLTHPRSGEISQCF 106 (380)
Q Consensus 31 ~~~F~~~yv~~~~PvVi~g~~~~~~WpA~~~Wt~----~~yL~~~~G~~~~V~v~~~~~~~~d~~~~~~~~~~g~~~~~f 106 (380)
|++|+++|+.+++||||+|++.+ |+|+++|+. .+||++.+|+. .|.|...+.+..+...... ...+
T Consensus 1 p~eF~~~~~~~~~PvVi~g~~~~--w~a~~~W~~~~~~~~~l~~~~g~~-~v~~~~~~~~~~~~~~~~~-------~~~~ 70 (251)
T PF13621_consen 1 PEEFFERYVKPNKPVVIRGAAAD--WPAFQKWTDDEYLLDYLKEKYGDV-PVPVRDSPNGISDSFGYND-------DRKF 70 (251)
T ss_dssp -HHHHHHTCCTT--EEEESSSTT--CCHHHH-S-----HHHHHHHHTSS-EEEEEEEST--SSBTS-B--------GCCC
T ss_pred CHHHHHHHhCCCCCEEEeCCccC--CchhhhccchhHHHHHHHHHcCCe-EEEEEecCCcccccccccc-------cccc
Confidence 68999999999999999999999 999999995 69999999999 9999866543222211000 0112
Q ss_pred cccccccCChHHHHHHHHccCC--CCcccccccccccchhhhhhhcccccccchhhhhhhCCCCCceEEEecCCCCcccc
Q 016948 107 ASAHVERLPFDEALQLVSNSKN--GDVVAYLQQQNDCFRDEYSVLGSDCDEHIAWATEALGCYPEAVNLWIGNQLSETSF 184 (380)
Q Consensus 107 ~~~~~~~m~~~efl~~~~~~~~--~~~~~Yl~~~~~~l~~e~p~L~~Di~~~ip~~~~~~~~~~~~~~lwiG~~gs~t~l 184 (380)
.......|+|++|++.+..... ....+|+... .+..++|.|.+|. .+|+....++......+||||++|+.|++
T Consensus 71 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~y~~~~--~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~ig~~gs~t~l 146 (251)
T PF13621_consen 71 VNFERERMPFRDFLDRLRANRDQRDKPYYYLQNW--NLFEDFPELREDN--DLPFPPELFGKEPQSSNLWIGPPGSFTPL 146 (251)
T ss_dssp TCEEEEEEEHHHHHHHHHHSCHSTSSSEEEEEEE--THHHHSHHHHCCS---CHHHHCHSCCHCCEEEEEEE-TTEEEEE
T ss_pred cCCeeEECcHHHHHHHHHhcccccCCceEEEecC--chHHHhhhhhhcc--ccccchhhcccCccccEEEEeCCCceeee
Confidence 2235789999999999988752 2356777653 4567789999884 57787777876667889999999999999
Q ss_pred cccCCCceEEEEeeeEEEEEeCCCCcCCCcccccCCccccccccCCCcceeeeecCCcccccccccCCCCCccccchhhc
Q 016948 185 HKDHYENLYTVVSGQKHFLLLPPTDVHRMYIRQYPAAHYSYSRVNDVERFTLELEEPVRYVPWCSVNPYPSPETRESEMA 264 (380)
Q Consensus 185 H~D~~~n~~~qv~G~K~~~L~pP~~~~~Ly~~~~p~~~~~~~~~~~~~~~~~~~d~p~~~~~~s~vd~~~~~~~~~~d~~ 264 (380)
|+|.++||++||+|+|+|+||||.+...||+..... .+..++.+|+ .++|.+
T Consensus 147 H~D~~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~----------------------~~~~~~~~d~------~~~d~~ 198 (251)
T PF13621_consen 147 HYDPSHNLLAQIRGRKRWILFPPDDSPNLYPRPDSH----------------------GGTVFSWVDP------DNPDLE 198 (251)
T ss_dssp EE-SSEEEEEEEESEEEEEEE-GGGGGGCTBETTTS----------------------T-TCBBSS-T------TS--TT
T ss_pred eECchhhhhhccCCCEEEEEECCccccccccceecc----------------------cccceeeeec------cChhhh
Confidence 999999999999999999999999999998753110 0123456676 467889
Q ss_pred cCCCCCCCCCCeEEEEcCCCeEeeCCCceeeeeecCCCCCeEEEEEeeecCCCC
Q 016948 265 KFPLYFNGPKPFECTVNAGEILYLPSMWFHHVRQSPDDNGYTIALNYWYDMQFD 318 (380)
Q Consensus 265 ~fP~f~~~~~~~~~~L~pGD~LfiP~gWwH~V~~l~d~~~~sIsvn~w~~~~~~ 318 (380)
+||++++ +++++|+|+|||+||||+||||+|+|+++ +++||||||||++.++
T Consensus 199 ~~p~~~~-~~~~~~~l~pGD~LfiP~gWwH~V~~~~~-~~~sisvn~w~~~~~~ 250 (251)
T PF13621_consen 199 RFPKFRK-APPYEVVLEPGDVLFIPPGWWHQVENLSD-DDLSISVNYWFRTPFD 250 (251)
T ss_dssp T-CGGGG---EEEEEEETT-EEEE-TT-EEEEEESTT-SSCEEEEEEEEESS--
T ss_pred hhhhhcc-CceeEEEECCCeEEEECCCCeEEEEEcCC-CCeEEEEEEEeccccC
Confidence 9999986 79999999999999999999999999931 2589999999998764
No 3
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-35 Score=273.18 Aligned_cols=238 Identities=21% Similarity=0.398 Sum_probs=181.9
Q ss_pred cceeeCC-CCCHHHHHHHhhcCCCcEEEECCCCCCCCccccCCCChhhhHhhcCCCCcEEEEecCCCCcccccccCCCCC
Q 016948 21 TIERLES-PPTPLQFLRDYVSQNKPCIIKNVSLHHQWPAFSLWPHPSYLSKTLSSSPPVSVHLSPNGRADSLVTLTHPRS 99 (380)
Q Consensus 21 ~V~rv~~-~~s~~~F~~~yv~~~~PvVi~g~~~~~~WpA~~~Wt~~~yL~~~~G~~~~V~v~~~~~~~~d~~~~~~~~~~ 99 (380)
.++|++. .+|.++|.++|-++++||||+|+..+ |||..+||. ++|.++||+. .+.+. ++. +
T Consensus 53 n~~r~~~~~isveeF~~~ferp~kPVll~g~~Dg--W~A~ekWT~-drLskkyrnq-~Fkcg--ed~--~---------- 114 (407)
T KOG2130|consen 53 NGNRERRRNISVEEFIERFERPYKPVLLSGLTDG--WPASEKWTL-DRLSKKYRNQ-KFKCG--EDN--N---------- 114 (407)
T ss_pred cchhhhhcCCCHHHHHHHhcccCCceEeeccccC--CchhhhhhH-HHHHHHhcCc-ccccc--ccC--C----------
Confidence 3445543 59999999999999999999999999 999999999 9999999988 55543 211 0
Q ss_pred CcccccccccccccCChHHHHHHHHccCCCCcccccccccccchhhhh--hhcccccccch--hhhhhhC-----CCCCc
Q 016948 100 GEISQCFASAHVERLPFDEALQLVSNSKNGDVVAYLQQQNDCFRDEYS--VLGSDCDEHIA--WATEALG-----CYPEA 170 (380)
Q Consensus 100 g~~~~~f~~~~~~~m~~~efl~~~~~~~~~~~~~Yl~~~~~~l~~e~p--~L~~Di~~~ip--~~~~~~~-----~~~~~ 170 (380)
| ..++|.|..|++++.... .+.++|+.+. .+.+..| .|.+|+ .+| |.++.|+ +.|..
T Consensus 115 g---------nsv~MKmkyY~~Ym~~~R-ddsPLYiFDs--sFgE~~~~rkLl~dY--~VPk~F~dDlF~y~g~e~RPpy 180 (407)
T KOG2130|consen 115 G---------NSVKMKMKYYIEYMKSTR-DDSPLYIFDS--SFGEHAPRRKLLEDY--SVPKYFRDDLFQYLGEERRPPY 180 (407)
T ss_pred C---------cceeeeHHHHHHHHhccc-cCCCeEEecc--hhhcccchhhhhhhc--CcchhhhHHHHHhcCcccCCCc
Confidence 1 368999999999988764 4579999873 4555556 799998 577 5666663 35788
Q ss_pred eEEEecCCCCcccccccCCC--ceEEEEeeeEEEEEeCCCCcCCCcccccCCccccccccCCCcceeeeecCCccccccc
Q 016948 171 VNLWIGNQLSETSFHKDHYE--NLYTVVSGQKHFLLLPPTDVHRMYIRQYPAAHYSYSRVNDVERFTLELEEPVRYVPWC 248 (380)
Q Consensus 171 ~~lwiG~~gs~t~lH~D~~~--n~~~qv~G~K~~~L~pP~~~~~Ly~~~~p~~~~~~~~~~~~~~~~~~~d~p~~~~~~s 248 (380)
.++.||+++|+|.+|.||.. .|+++|+|+|||.||||...+.+-. +.. .+.|. .|.....|+
T Consensus 181 RWfvmGParSGtsiHIDPlgTSAWNtll~GhKrW~LfPp~~p~~lvk---v~~-------~e~g~------~~de~itwf 244 (407)
T KOG2130|consen 181 RWFVMGPARSGTSIHIDPLGTSAWNTLLQGHKRWVLFPPGTPPELVK---VTV-------DEGGK------QPDEIITWF 244 (407)
T ss_pred eeEEecCCCCCceeEECCcchHHHHHHhhccceeEEcCCCCCCCcee---ecc-------cccCC------CCcceechh
Confidence 99999999999999999965 7999999999999999998876532 111 02221 122334455
Q ss_pred ccCCCCCccccchhhccCCCCCCCCCCeEEEEcCCCeEeeCCCceeeeeecCCCCCeEEEEEeeecCCC
Q 016948 249 SVNPYPSPETRESEMAKFPLYFNGPKPFECTVNAGEILYLPSMWFHHVRQSPDDNGYTIALNYWYDMQF 317 (380)
Q Consensus 249 ~vd~~~~~~~~~~d~~~fP~f~~~~~~~~~~L~pGD~LfiP~gWwH~V~~l~d~~~~sIsvn~w~~~~~ 317 (380)
+. .| +..++|.+...-++++|++.|||++|||.||||-|.|++ .++.|+.||.-..+|
T Consensus 245 ~~-~y--------~rt~~Pswp~E~kPIEc~q~pGEt~fVP~GWWHvVlNle--~TIAiTqNf~s~eNf 302 (407)
T KOG2130|consen 245 ST-IY--------PRTQLPSWPDEYKPIECLQKPGETMFVPSGWWHVVLNLE--PTIAITQNFASKENF 302 (407)
T ss_pred hh-cc--------ccccCCCCccccCCceeeecCCceEEecCCeEEEEeccC--ceeeeeeccccccCC
Confidence 42 22 346677765446799999999999999999999999997 367777788665554
No 4
>KOG2132 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=99.97 E-value=3.4e-33 Score=261.85 Aligned_cols=221 Identities=23% Similarity=0.397 Sum_probs=178.8
Q ss_pred cceeeCCCCCHHHHHHHhhcCCCcEEEECCCCCCCCccccCCCChhhhHhhcCCCCcEEEEecCCCCcccccccCCCCCC
Q 016948 21 TIERLESPPTPLQFLRDYVSQNKPCIIKNVSLHHQWPAFSLWPHPSYLSKTLSSSPPVSVHLSPNGRADSLVTLTHPRSG 100 (380)
Q Consensus 21 ~V~rv~~~~s~~~F~~~yv~~~~PvVi~g~~~~~~WpA~~~Wt~~~yL~~~~G~~~~V~v~~~~~~~~d~~~~~~~~~~g 100 (380)
.++..+. ++..+|..+++.++.|+|++|...| |||.++|+. +||....|.. +|.|+++.+. ++.
T Consensus 128 ~~~~~~~-~~l~~~l~d~~~~~~p~~~l~~~~h--wpa~~kw~l-~~l~~va~~r-TvpvEvg~~y-~~~---------- 191 (355)
T KOG2132|consen 128 DVPGEDR-LSLQEFLNDTVGRGTPVILLGFNWH--WPAIQKWSL-GYLQQVAGNR-TVPVEVGSTY-ADE---------- 191 (355)
T ss_pred hhccccc-hHHHHHHHHhhcCCCceEEeccccc--chHhhhcch-hHHHhcccce-eeeeeccccc-chh----------
Confidence 3344444 8999999999999999999999999 999999976 9999999999 9999987542 111
Q ss_pred cccccccccccccCChHHHHHHHHccCCCCcccccccccccchhhhhhhcccccccchhhhhhhCCC--CCceEEEecCC
Q 016948 101 EISQCFASAHVERLPFDEALQLVSNSKNGDVVAYLQQQNDCFRDEYSVLGSDCDEHIAWATEALGCY--PEAVNLWIGNQ 178 (380)
Q Consensus 101 ~~~~~f~~~~~~~m~~~efl~~~~~~~~~~~~~Yl~~~~~~l~~e~p~L~~Di~~~ip~~~~~~~~~--~~~~~lwiG~~ 178 (380)
...+.-|++.+|+.+.....+. ...|+++. .+....|++..|+. +|-.+...+.. ....+.|+|++
T Consensus 192 -------~w~q~l~t~~~g~~R~~~~~p~-~~~YlAqh--~lfdqi~elk~Di~--iPDyc~~~~f~~~~v~~~~w~Gpa 259 (355)
T KOG2132|consen 192 -------DWSQNLMTQIKGIKRCILFEPR-ECLYLAQH--HLFDQIPELKFDIS--IPDYCSFPNFENEVVDINAWIGPA 259 (355)
T ss_pred -------HHHhhhHHHhhhhhhhhcCCcc-ccchhhhh--hhhccchhhhhccC--CCceeecCCCCccccceeEEeccC
Confidence 1135678999999987766554 57787774 34567788999984 55222233333 37889999999
Q ss_pred CCcccccccCCCceEEEEeeeEEEEEeCCCCcCCCcccccCCccccccccCCCcceeeeecCCcccccccccCCCCCccc
Q 016948 179 LSETSFHKDHYENLYTVVSGQKHFLLLPPTDVHRMYIRQYPAAHYSYSRVNDVERFTLELEEPVRYVPWCSVNPYPSPET 258 (380)
Q Consensus 179 gs~t~lH~D~~~n~~~qv~G~K~~~L~pP~~~~~Ly~~~~p~~~~~~~~~~~~~~~~~~~d~p~~~~~~s~vd~~~~~~~ 258 (380)
|++|++|+|+++|+++||.|+|+|+|++|....++||...+.. ..|+||.
T Consensus 260 GtV~pih~dp~hNi~~qv~G~k~i~l~~p~~s~~lyP~d~~~~------------------------~tsqvdv------ 309 (355)
T KOG2132|consen 260 GTVLPIHMDPWHNILSQVFGRKRIRLYPPEDSGALYPTDTYLL------------------------ETSQVDV------ 309 (355)
T ss_pred CceeccccccccceeeeeecceEEEEecCcccCCCCCccchhh------------------------ccccccc------
Confidence 9999999999999999999999999999999999997542211 1356666
Q ss_pred cchhhccCCCCCCCCCCeEEEEcCCCeEeeCCCceeeeeecC
Q 016948 259 RESEMAKFPLYFNGPKPFECTVNAGEILYLPSMWFHHVRQSP 300 (380)
Q Consensus 259 ~~~d~~~fP~f~~~~~~~~~~L~pGD~LfiP~gWwH~V~~l~ 300 (380)
.+||+++||+|++ ++.+.|+|+|||+||||.-|||.|++++
T Consensus 310 enPdlk~fp~~~k-~~~l~~lL~pGe~L~iP~kwwhyvrs~d 350 (355)
T KOG2132|consen 310 ENPDLKAFPKFAK-ARFLDCLLEPGEALFIPPKWWHYVRSLD 350 (355)
T ss_pred CCCChhhhhHHHH-HHHHHHhcCCchhccccHHHhhhhhhcc
Confidence 7889999999986 9999999999999999999999999984
No 5
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=99.86 E-value=2.4e-22 Score=190.85 Aligned_cols=242 Identities=21% Similarity=0.353 Sum_probs=147.1
Q ss_pred CCCcceeeCC-CCCHHHHHHHhhcCCCcEEEECCCCCCCCccc----cCCCC------h-----hhhHhhcCCCCcEEEE
Q 016948 18 SNSTIERLES-PPTPLQFLRDYVSQNKPCIIKNVSLHHQWPAF----SLWPH------P-----SYLSKTLSSSPPVSVH 81 (380)
Q Consensus 18 ~~~~V~rv~~-~~s~~~F~~~yv~~~~PvVi~g~~~~~~WpA~----~~Wt~------~-----~yL~~~~G~~~~V~v~ 81 (380)
....|+|+-. .++...|.+.|...+.||+|.++..+ |++. ..|.+ + .|.+.+..+. .+.|.
T Consensus 26 lr~~v~r~~g~~~d~~~~a~~~~~k~~~v~is~v~~d--~~~~~~~~~s~~dl~~~~~l~n~~~~f~k~~v~~~-~~~v~ 102 (427)
T KOG2131|consen 26 LRPCVLRLIGPTADYGDFAERDTHKRPGVLISYVLED--WPCVSRDNESGADLNNNPDLKNFARSFAKRIVQNG-DKNVF 102 (427)
T ss_pred hhhhhhhhcccccCcccchhhhcccCCCccccccccC--cccccCCCcchhhhccCcchhHHHHHHhHHHHhcC-Ccccc
Confidence 3456777765 57888999999999999999999999 9998 44531 1 1333332222 22332
Q ss_pred ecCCCCcccccccCCCCCCcccccccccccccCChHHHHHHHHccCCCC-cccccccccccchhhh--------hhh-cc
Q 016948 82 LSPNGRADSLVTLTHPRSGEISQCFASAHVERLPFDEALQLVSNSKNGD-VVAYLQQQNDCFRDEY--------SVL-GS 151 (380)
Q Consensus 82 ~~~~~~~d~~~~~~~~~~g~~~~~f~~~~~~~m~~~efl~~~~~~~~~~-~~~Yl~~~~~~l~~e~--------p~L-~~ 151 (380)
.... ..|...+..++++.+|+..+.+....+ ..+|++++. +.++. |.| .+
T Consensus 103 ~~~~------------------s~f~~~~~Le~ny~d~~v~~a~~~e~e~~~l~lad~~--~~e~~~~~~~~q~p~ly~k 162 (427)
T KOG2131|consen 103 LCDL------------------SLFPDYEYLERNYGDFVVPVANCNEKERYSLKLADWE--FREEQVQLACPQAPSLYGK 162 (427)
T ss_pred cccc------------------ccCccHHHHHhhhhhcchhhccccchhhhhhhhccch--hHHHhHhhhcCCCcccccc
Confidence 2211 112122345667777776665543211 122233221 01100 111 11
Q ss_pred cc------cccch-hhhhhh-----------CCCCCceEEEecCCCCcccccccCCC--ceEEEEeeeEEEEEeCCCCcC
Q 016948 152 DC------DEHIA-WATEAL-----------GCYPEAVNLWIGNQLSETSFHKDHYE--NLYTVVSGQKHFLLLPPTDVH 211 (380)
Q Consensus 152 Di------~~~ip-~~~~~~-----------~~~~~~~~lwiG~~gs~t~lH~D~~~--n~~~qv~G~K~~~L~pP~~~~ 211 (380)
|. +...+ +....| +.....+.+++|++||.|++|-|.++ .|.+.|.|+|+|.|+||.+..
T Consensus 163 DwHL~~~~d~~~~~~~pd~F~~dwlne~~i~~~~ddyrFvy~Gp~gSwtp~HaDVf~s~swS~nicG~KrWl~~pP~qe~ 242 (427)
T KOG2131|consen 163 DWHLYRFLDNDFPYWTPDLFAKDWLNEFVIDGESDDYRFVYAGPAGSWTPFHADVFHSPSWSVNICGRKRWLLYPPEQEQ 242 (427)
T ss_pred chheeeecCcccccccchhhhhcccchhhccCCCCceeEEEeccCCCCCccchhhhcCCcceeeeecceeEEEeChHHhh
Confidence 11 11111 111122 12346788999999999999999976 789999999999999999988
Q ss_pred CCcccccCCccccccccCCCcceeeeecCCcccccccccCCCCCccccchhhccCCCCCCCCCCeEEEEcCCCeEeeCCC
Q 016948 212 RMYIRQYPAAHYSYSRVNDVERFTLELEEPVRYVPWCSVNPYPSPETRESEMAKFPLYFNGPKPFECTVNAGEILYLPSM 291 (380)
Q Consensus 212 ~Ly~~~~p~~~~~~~~~~~~~~~~~~~d~p~~~~~~s~vd~~~~~~~~~~d~~~fP~f~~~~~~~~~~L~pGD~LfiP~g 291 (380)
.|+.+ + |...+.+ |+. -+.. + . .+.++++++||+++|+|+|
T Consensus 243 ~l~dr-~-------------gnlp~~~--------~~~------------~ld~---~-~-~~~lei~Qepge~VFvPsG 283 (427)
T KOG2131|consen 243 TLADR-Y-------------GNLPLPS--------WIT------------KLDL---F-R-GPLLEIFQEPGETVFVPSG 283 (427)
T ss_pred hhhhh-c-------------cCcCCcc--------ccc------------cccc---c-c-cchhhhhccCCceeeccCc
Confidence 77643 1 1111111 111 1111 2 1 5679999999999999999
Q ss_pred ceeeeeecCCCCCeEEEEEeeecCCCChhhHHHH
Q 016948 292 WFHHVRQSPDDNGYTIALNYWYDMQFDIKYAYFN 325 (380)
Q Consensus 292 WwH~V~~l~d~~~~sIsvn~w~~~~~~~~~~~~~ 325 (380)
|+|||.|++| +||||.-|...+.+.+.+-.
T Consensus 284 W~hQV~NL~d----TISINHNW~N~~nl~~~w~~ 313 (427)
T KOG2131|consen 284 WHHQVLNLGD----TISINHNWCNATNLAWMWDA 313 (427)
T ss_pred cccccccccc----eeeecccccccccHHHHHHH
Confidence 9999999964 88888777776666655443
No 6
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=1.3e-14 Score=139.34 Aligned_cols=202 Identities=18% Similarity=0.240 Sum_probs=120.3
Q ss_pred CCCCHHHHHHHhhcCCCcEEEECCCCCCCCccccCCCChhhhHhhcCCCCcEEEEecCCCCcccccccCCCCCCcccccc
Q 016948 27 SPPTPLQFLRDYVSQNKPCIIKNVSLHHQWPAFSLWPHPSYLSKTLSSSPPVSVHLSPNGRADSLVTLTHPRSGEISQCF 106 (380)
Q Consensus 27 ~~~s~~~F~~~yv~~~~PvVi~g~~~~~~WpA~~~Wt~~~yL~~~~G~~~~V~v~~~~~~~~d~~~~~~~~~~g~~~~~f 106 (380)
..+|+++|++.|+. .||+||||+..+ . .+.-++ +-|.+.+-.. .|.-+.-. +. +.|.
T Consensus 13 ~glt~~~FL~~YWq-kKPlliR~a~p~--~--~~p~~p-deLa~La~~e-dV~srLV~---------~~--~~~~----- 69 (383)
T COG2850 13 LGLTPEDFLRDYWQ-KKPLLIRNAFPE--F--HSPLSP-DELAGLAQEE-DVTSRLVS---------HE--SDGT----- 69 (383)
T ss_pred CCCCHHHHHHHHhh-hcchHHhhcccc--c--ccCCCH-HHHHHHhccc-cccchhhh---------hc--cCCc-----
Confidence 35899999999987 899999999876 2 223333 4466665544 44432211 11 0010
Q ss_pred cccccccCChHHHHHHHHccCCCCcccccccccccchhhhhhhcccccccchhhhhhhCCCCCceEEEecCCCCcccccc
Q 016948 107 ASAHVERLPFDEALQLVSNSKNGDVVAYLQQQNDCFRDEYSVLGSDCDEHIAWATEALGCYPEAVNLWIGNQLSETSFHK 186 (380)
Q Consensus 107 ~~~~~~~m~~~efl~~~~~~~~~~~~~Yl~~~~~~l~~e~p~L~~Di~~~ip~~~~~~~~~~~~~~lwiG~~gs~t~lH~ 186 (380)
.....-+|.++=-. ..+.++.+-++..+ .+.++...|.+.++ -+| ......+.+.+.+.|.+-..|+
T Consensus 70 --w~~~~gPfe~~d~~---~~p~~wsllvq~vd-~w~p~v~~l~~~Fr-flP------~wr~ddiMIS~a~~GGgvg~H~ 136 (383)
T COG2850 70 --WQVSHGPFEEEDFL---GLPRNWSLLVQAVD-HWHPEVAALMEPFR-FLP------DWRIDDIMISFAAPGGGVGPHF 136 (383)
T ss_pred --eeEeeCccchhccc---cCCcCceEEEehhh-hcCHHHHHHHHHhc-cCc------cccccceEEEEecCCCccCccc
Confidence 01223333333110 11112222222222 23334445554332 122 1233556677788888889999
Q ss_pred cCCCceEEEEeeeEEEEEeCCCCcCCCcccccCCccccccccCCCcceeeeecCCcccccccccCCCCCccccchhhccC
Q 016948 187 DHYENLYTVVSGQKHFLLLPPTDVHRMYIRQYPAAHYSYSRVNDVERFTLELEEPVRYVPWCSVNPYPSPETRESEMAKF 266 (380)
Q Consensus 187 D~~~n~~~qv~G~K~~~L~pP~~~~~Ly~~~~p~~~~~~~~~~~~~~~~~~~d~p~~~~~~s~vd~~~~~~~~~~d~~~f 266 (380)
|.|++++.|.+|+|||.|-.+.....+++.. +. -.++|
T Consensus 137 D~YDVfliQg~G~RRW~v~~~~~~~~~~~~~------------d~----------------~~~~~-------------- 174 (383)
T COG2850 137 DQYDVFLIQGQGRRRWRVGKKCNMSTLCPHP------------DL----------------LILAP-------------- 174 (383)
T ss_pred cchheeEEeecccceeecCCcccccCcCCCc------------ch----------------hhcCC--------------
Confidence 9999999999999999998887665554311 00 01122
Q ss_pred CCCCCCCCCeEEEEcCCCeEeeCCCceeeeeecCCCCCeEEEEEeee
Q 016948 267 PLYFNGPKPFECTVNAGEILYLPSMWFHHVRQSPDDNGYTIALNYWY 313 (380)
Q Consensus 267 P~f~~~~~~~~~~L~pGD~LfiP~gWwH~V~~l~d~~~~sIsvn~w~ 313 (380)
.....+.+|+|||+||||++|||+-...+ ++++.||-|..
T Consensus 175 -----f~~~~d~vlepGDiLYiPp~~~H~gvae~--dc~tySvG~r~ 214 (383)
T COG2850 175 -----FEPDIDEVLEPGDILYIPPGFPHYGVAED--DCMTYSVGFRA 214 (383)
T ss_pred -----CCchhhhhcCCCceeecCCCCCcCCcccc--cccceeeeccC
Confidence 13457789999999999999999999985 46777777643
No 7
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=99.51 E-value=7.8e-14 Score=136.23 Aligned_cols=96 Identities=21% Similarity=0.390 Sum_probs=61.2
Q ss_pred CCCceEEEecCCCC-cccccccCCCceEEEEeeeEEEEEeCCCCcC-CCcccccCCccccccccCCCcceeeeecCCccc
Q 016948 167 YPEAVNLWIGNQLS-ETSFHKDHYENLYTVVSGQKHFLLLPPTDVH-RMYIRQYPAAHYSYSRVNDVERFTLELEEPVRY 244 (380)
Q Consensus 167 ~~~~~~lwiG~~gs-~t~lH~D~~~n~~~qv~G~K~~~L~pP~~~~-~Ly~~~~p~~~~~~~~~~~~~~~~~~~d~p~~~ 244 (380)
.....|+|++++|+ +...|+|.+++|++|+.|+|+|.|+++.... ..+..
T Consensus 112 ~~~~~n~Y~tp~g~~g~~~H~D~~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~---------------------------- 163 (319)
T PF08007_consen 112 CPVGANAYLTPPGSQGFGPHYDDHDVFVLQLEGRKRWRLYPPPDEPAPLYSD---------------------------- 163 (319)
T ss_dssp S-EEEEEEEETSSBEESECEE-SSEEEEEEEES-EEEEEE-SCCCTTTSSCE----------------------------
T ss_pred cccceEEEecCCCCCCccCEECCcccEEEECCceeEEEECCCCcccccccCC----------------------------
Confidence 34678999999985 4889999999999999999999999943321 11100
Q ss_pred ccccccCCCCCccccchhhccCCCCCCCCCCeEEEEcCCCeEeeCCCceeeeeecCCCCCeEEEEEe
Q 016948 245 VPWCSVNPYPSPETRESEMAKFPLYFNGPKPFECTVNAGEILYLPSMWFHHVRQSPDDNGYTIALNY 311 (380)
Q Consensus 245 ~~~s~vd~~~~~~~~~~d~~~fP~f~~~~~~~~~~L~pGD~LfiP~gWwH~V~~l~d~~~~sIsvn~ 311 (380)
. +... +.......+++|+|||+||||+||||++.+.+ .++++||++
T Consensus 164 -----~-----------~~~~---~~~~~~~~~~~L~pGD~LYlPrG~~H~~~~~~--~S~hltv~~ 209 (319)
T PF08007_consen 164 -----Q-----------PFKQ---LEEFEPVEEVVLEPGDVLYLPRGWWHQAVTTD--PSLHLTVGF 209 (319)
T ss_dssp ------------------TTT---CG--STSEEEEE-TT-EEEE-TT-EEEEEESS---EEEEEEEE
T ss_pred -----C-----------Cccc---cccCceeEEEEECCCCEEEECCCccCCCCCCC--CceEEEEee
Confidence 0 0010 10114567999999999999999999999985 345555553
No 8
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=3.2e-13 Score=132.68 Aligned_cols=153 Identities=22% Similarity=0.326 Sum_probs=108.5
Q ss_pred hhhCCCCCceEEEecCCCCc-ccccccCCCceEEEEeeeEEEEEeCCCCcC-CCcccccCCccccccccCCCcceeeeec
Q 016948 162 EALGCYPEAVNLWIGNQLSE-TSFHKDHYENLYTVVSGQKHFLLLPPTDVH-RMYIRQYPAAHYSYSRVNDVERFTLELE 239 (380)
Q Consensus 162 ~~~~~~~~~~~lwiG~~gs~-t~lH~D~~~n~~~qv~G~K~~~L~pP~~~~-~Ly~~~~p~~~~~~~~~~~~~~~~~~~d 239 (380)
+.||+. ...|+|+.|+||. -+.|||.-+.|+.||.|+|+|+||.|.... .|+.. .++
T Consensus 311 eqFgc~-vGaNvYLTPagSqGfaPHyDdIeaFvlQvEGrK~Wrly~P~~~~eel~l~-------------sS~------- 369 (629)
T KOG3706|consen 311 EQFGCL-VGANVYLTPAGSQGFAPHYDDIEAFVLQVEGRKHWRLYHPTVPLEELALV-------------SSD------- 369 (629)
T ss_pred HHhccc-cccceeecCCCCCCCCCchhhhhhhhheeccceeeEeecCCCcHhhhhhc-------------cCC-------
Confidence 345653 5789999999986 789999999999999999999999997653 34321 111
Q ss_pred CCcccccccccCCCCCccccchhhccCCCCCCCCCCeEEEEcCCCeEeeCCCceeeeeecCCCCCeEEEEEeeecCCCCh
Q 016948 240 EPVRYVPWCSVNPYPSPETRESEMAKFPLYFNGPKPFECTVNAGEILYLPSMWFHHVRQSPDDNGYTIALNYWYDMQFDI 319 (380)
Q Consensus 240 ~p~~~~~~s~vd~~~~~~~~~~d~~~fP~f~~~~~~~~~~L~pGD~LfiP~gWwH~V~~l~d~~~~sIsvn~w~~~~~~~ 319 (380)
|+ ...|+ |.+.++.+|+|||+||+|.|.-||..+-+...+++|+++.. .
T Consensus 370 -----------Nf------~eedl--------gePV~e~vle~GDllYfPRG~IHQA~t~~~vHSlHvTlSty------q 418 (629)
T KOG3706|consen 370 -----------NF------TEEDL--------GEPVHEFVLEPGDLLYFPRGTIHQADTPALVHSLHVTLSTY------Q 418 (629)
T ss_pred -----------CC------ChhHh--------CCchHHhhcCCCcEEEecCcceeeccccchhceeEEEeehh------h
Confidence 11 12222 35678899999999999999999999876566888888854 5
Q ss_pred hhHHHHHHHHhcccC-----CCCCcc------cccccccCCCCccchhhhhhhhhhcccc
Q 016948 320 KYAYFNFLQSLHFKA-----PCDPTL------LEIDYEDSRPNASICNSREKLFADASSL 368 (380)
Q Consensus 320 ~~~~~~~~~~~~~~~-----~~~~~l------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (380)
++.|.+||+.+.+.. ..+..| ....+......-+.|.+| |++.+..|
T Consensus 419 q~s~anlle~~ip~av~~a~d~~velRrGLP~~~fq~lg~~~~d~~~~~r--lvekvr~l 476 (629)
T KOG3706|consen 419 QNSWANLLEDTIPGAVFDAADEDVELRRGLPRGLFQLLGQVESDTVATRR--LVEKVRTL 476 (629)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhhHHhhCCChhHHHHhChhccCCccHHH--HHHHHHHH
Confidence 677888888877654 111111 122555555666778887 66665544
No 9
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=99.23 E-value=7.2e-12 Score=103.42 Aligned_cols=110 Identities=23% Similarity=0.357 Sum_probs=65.0
Q ss_pred EEEecCCCCcccccccCCC--c-eEEEEeeeEEEEEeCCCCcCCCcccccCCccccccccCCCcceeeeecCCccccccc
Q 016948 172 NLWIGNQLSETSFHKDHYE--N-LYTVVSGQKHFLLLPPTDVHRMYIRQYPAAHYSYSRVNDVERFTLELEEPVRYVPWC 248 (380)
Q Consensus 172 ~lwiG~~gs~t~lH~D~~~--n-~~~qv~G~K~~~L~pP~~~~~Ly~~~~p~~~~~~~~~~~~~~~~~~~d~p~~~~~~s 248 (380)
+|+||.++|.|++|.|... + ++....|.|.|.++||.+...+..-- . ..... ....+ ..+.
T Consensus 1 ~~~ig~~~s~t~~H~e~~~~~sv~~~~~g~~k~W~~v~~~~~~~~~~~~-~-~~~~~----~~~~~----------~~~~ 64 (114)
T PF02373_consen 1 WLYIGMKGSYTPWHIEDNGLSSVNYHHFGGSKVWYIVPPEDADKFEKFL-R-SKESQ----NCPQF----------LDHK 64 (114)
T ss_dssp EEEEE-TTEEEEEEE-GGG-EEEEEEEEESEEEEEEE-GGGHHHHHHHH-H-HHHHH----HSTTG----------GCTG
T ss_pred CEEEeCCCcCCCcEecCCCCceeeeeccCcceEeEEechhhhhhHHHHH-h-hcccc----ccccc----------cccc
Confidence 4789999999999999865 2 46678899999999999865442100 0 00000 00000 0000
Q ss_pred ccCCCCCccccchh-hccCCCCCCCCCCeEEEEcCCCeEeeCCCceeeeeecCCCCCeEEEEEe
Q 016948 249 SVNPYPSPETRESE-MAKFPLYFNGPKPFECTVNAGEILYLPSMWFHHVRQSPDDNGYTIALNY 311 (380)
Q Consensus 249 ~vd~~~~~~~~~~d-~~~fP~f~~~~~~~~~~L~pGD~LfiP~gWwH~V~~l~d~~~~sIsvn~ 311 (380)
. .. ..|+ +.+ .+.+.++++++|||++|||+||||+|.|+++ .+++|+||
T Consensus 65 ~-~~------~~p~~l~~-----~gi~~~~~~Q~~Ge~V~i~pg~~H~v~n~g~--~i~~a~Nf 114 (114)
T PF02373_consen 65 N-IF------VSPEQLKK-----AGIPVYRFVQKPGEFVFIPPGAYHQVFNLGD--NISEAVNF 114 (114)
T ss_dssp G-EE------EGHHHHHH-----TTS--EEEEEETT-EEEE-TT-EEEEEESSS--EEEEEEEE
T ss_pred c-cc------cceeeeec-----cCcccccceECCCCEEEECCCceEEEEeCCc--eEEEEecC
Confidence 0 00 1122 222 3578999999999999999999999999974 78888887
No 10
>KOG1633 consensus F-box protein JEMMA and related proteins with JmjC, PHD, F-box and LRR domains [Chromatin structure and dynamics]
Probab=98.48 E-value=2.6e-07 Score=98.74 Aligned_cols=158 Identities=22% Similarity=0.341 Sum_probs=101.6
Q ss_pred cccCChHHHHHHHHccCCCCcccc-cccc---cccch--hhhhhhcccccc-cchhhhhhhCCC-CCceEEEecCCCCcc
Q 016948 111 VERLPFDEALQLVSNSKNGDVVAY-LQQQ---NDCFR--DEYSVLGSDCDE-HIAWATEALGCY-PEAVNLWIGNQLSET 182 (380)
Q Consensus 111 ~~~m~~~efl~~~~~~~~~~~~~Y-l~~~---~~~l~--~e~p~L~~Di~~-~ip~~~~~~~~~-~~~~~lwiG~~gs~t 182 (380)
...|+|.+|++++......+ +| +-+. ...+. -+-|.+...+.= +--|++...... ...-.+.|+..++.|
T Consensus 62 ~~km~~~~~~~yy~~~~~~R--~yNVisLEfS~Trl~~~V~~P~ivr~ldwV~n~wP~~~~~~~P~vqkyclmsv~~~Yt 139 (776)
T KOG1633|consen 62 DCKMTLKEFVKYYSSPQRKR--LYNVISLEFSDTRLSNLVESPEIVRKLDWVDNQWPDDLKMEYPKVQKYCLMSVKDSYT 139 (776)
T ss_pred cccccHHHHhhhhcCcchhh--hhheeccccCcchHHhcCCCchhhhhhhchhccCCchhcccccccccceeeecccccc
Confidence 45899999999988775422 33 1111 00000 022444443320 011343333222 234456799999999
Q ss_pred cccccCCC--ceEEEEeeeEEEEEeCCCCcCC-CcccccCCccccccccCCCcceeeeecCCccccccc-ccCCCCCccc
Q 016948 183 SFHKDHYE--NLYTVVSGQKHFLLLPPTDVHR-MYIRQYPAAHYSYSRVNDVERFTLELEEPVRYVPWC-SVNPYPSPET 258 (380)
Q Consensus 183 ~lH~D~~~--n~~~qv~G~K~~~L~pP~~~~~-Ly~~~~p~~~~~~~~~~~~~~~~~~~d~p~~~~~~s-~vd~~~~~~~ 258 (380)
.+|.|... .|+-.+.|.|.|.|++|..... +|.. |. ..+
T Consensus 140 dfhidfggtsvwyhil~G~K~f~lI~pt~~nl~~ye~------------------------------w~~s~~------- 182 (776)
T KOG1633|consen 140 DFHIDFGGTSVWYHILAGEKTFYLIPPTCENLELYEC------------------------------WESSTP------- 182 (776)
T ss_pred ccccCCCCcchhhhhhccccceeeeCCcccchhhhhh------------------------------hhhccc-------
Confidence 99999965 6799999999999999998766 4432 11 110
Q ss_pred cchhhccCCCCCCCCCCeEEEEcCCCeEeeCCCceeeeeecCCCCCeEEEEEeee
Q 016948 259 RESEMAKFPLYFNGPKPFECTVNAGEILYLPSMWFHHVRQSPDDNGYTIALNYWY 313 (380)
Q Consensus 259 ~~~d~~~fP~f~~~~~~~~~~L~pGD~LfiP~gWwH~V~~l~d~~~~sIsvn~w~ 313 (380)
-+...|+.- ...++.|+|++|++||||.||-|.|.+-.| .+.+..||-.
T Consensus 183 --q~~~ffGd~--VdkC~~~~l~~g~T~~iPsGwIhAV~Tp~d--~l~fgGnflh 231 (776)
T KOG1633|consen 183 --QDEIFFGDC--VDKCYKCILKQGQTLFIPSGWIHAVLTPTD--CLVFGGNFLH 231 (776)
T ss_pred --ccccccCCc--cceeEEEEeccCceEecccceeEeeecCcc--hheeccchhh
Confidence 012233322 246899999999999999999999999864 7888888863
No 11
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=98.05 E-value=8.1e-07 Score=93.53 Aligned_cols=39 Identities=21% Similarity=0.390 Sum_probs=33.0
Q ss_pred CCCCeEEEEcCCCeEeeCCCceeeeeecCCCCCeEEEEEee
Q 016948 272 GPKPFECTVNAGEILYLPSMWFHHVRQSPDDNGYTIALNYW 312 (380)
Q Consensus 272 ~~~~~~~~L~pGD~LfiP~gWwH~V~~l~d~~~~sIsvn~w 312 (380)
|.++|.+++..||++|||+|-.|||+|+- ..+.+++-|.
T Consensus 795 GVe~WtfvQ~LGdAVfIPAGaPHQVrNLk--SCikVa~DFV 833 (889)
T KOG1356|consen 795 GVEPWTFVQFLGDAVFIPAGAPHQVRNLK--SCIKVAEDFV 833 (889)
T ss_pred CCCccchhhcccceEEecCCCcHHhhhhh--hHHHHHHhhC
Confidence 58999999999999999999999999995 3555665553
No 12
>KOG2132 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=97.46 E-value=4.9e-05 Score=72.80 Aligned_cols=111 Identities=22% Similarity=0.205 Sum_probs=76.5
Q ss_pred cCCCCcccccccCCCceEEEEeeeEEEEEeCCCCcCCCcccccCCccccccccCCCcceeeeecCCcccccccccCCCCC
Q 016948 176 GNQLSETSFHKDHYENLYTVVSGQKHFLLLPPTDVHRMYIRQYPAAHYSYSRVNDVERFTLELEEPVRYVPWCSVNPYPS 255 (380)
Q Consensus 176 G~~gs~t~lH~D~~~n~~~qv~G~K~~~L~pP~~~~~Ly~~~~p~~~~~~~~~~~~~~~~~~~d~p~~~~~~s~vd~~~~ 255 (380)
+-....|..|+|-.+|++.|+.|-||.++++|. .++|-.. .++- + +...+ ..|
T Consensus 181 pvEvg~~y~~~~w~q~l~t~~~g~~R~~~~~p~--~~~YlAq---h~lf-----d-qi~el------------k~D---- 233 (355)
T KOG2132|consen 181 PVEVGSTYADEDWSQNLMTQIKGIKRCILFEPR--ECLYLAQ---HHLF-----D-QIPEL------------KFD---- 233 (355)
T ss_pred eeecccccchhHHHhhhHHHhhhhhhhhcCCcc--ccchhhh---hhhh-----c-cchhh------------hhc----
Confidence 334445899999999999999999999999999 3455211 1110 0 11111 012
Q ss_pred ccccchhhccCCCCCC-CCCCeEEEEcCCCeEeeCCCceeeeeecCCCCCeEEEEEeeecCC
Q 016948 256 PETRESEMAKFPLYFN-GPKPFECTVNAGEILYLPSMWFHHVRQSPDDNGYTIALNYWYDMQ 316 (380)
Q Consensus 256 ~~~~~~d~~~fP~f~~-~~~~~~~~L~pGD~LfiP~gWwH~V~~l~d~~~~sIsvn~w~~~~ 316 (380)
+..||+.++|.|.+ ++....++..+|++++||..|||.+.+..- +.-.|-++.|++..
T Consensus 234 --i~iPDyc~~~~f~~~~v~~~~w~GpaGtV~pih~dp~hNi~~qv~-G~k~i~l~~p~~s~ 292 (355)
T KOG2132|consen 234 --ISIPDYCSFPNFENEVVDINAWIGPAGTVLPIHMDPWHNILSQVF-GRKRIRLYPPEDSG 292 (355)
T ss_pred --cCCCceeecCCCCccccceeEEeccCCceeccccccccceeeeee-cceEEEEecCcccC
Confidence 24679999999964 255566666669999999999999988642 35577777777744
No 13
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=97.29 E-value=0.0016 Score=59.15 Aligned_cols=74 Identities=20% Similarity=0.321 Sum_probs=57.4
Q ss_pred CCCCcccccccCCC-c--eEEEEeeeEEEEEeCCCCcCCCcccccCCccccccccCCCcceeeeecCCcccccccccCCC
Q 016948 177 NQLSETSFHKDHYE-N--LYTVVSGQKHFLLLPPTDVHRMYIRQYPAAHYSYSRVNDVERFTLELEEPVRYVPWCSVNPY 253 (380)
Q Consensus 177 ~~gs~t~lH~D~~~-n--~~~qv~G~K~~~L~pP~~~~~Ly~~~~p~~~~~~~~~~~~~~~~~~~d~p~~~~~~s~vd~~ 253 (380)
.+|+...+|+.+.. - |+-.|.|+=+.+|+.|+-
T Consensus 88 t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~~G-------------------------------------------- 123 (209)
T COG2140 88 TPGAMRELHYHPNADEPEIYYVLKGEGRMLVQKPEG-------------------------------------------- 123 (209)
T ss_pred cCCcccccccCCCCCcccEEEEEeccEEEEEEcCCC--------------------------------------------
Confidence 46677778999843 4 999999999988876641
Q ss_pred CCccccchhhccCCCCCCCCCCeEEEEcCCCeEeeCCCceeeeeecCCCCCeEEEEEeeecCC
Q 016948 254 PSPETRESEMAKFPLYFNGPKPFECTVNAGEILYLPSMWFHHVRQSPDDNGYTIALNYWYDMQ 316 (380)
Q Consensus 254 ~~~~~~~~d~~~fP~f~~~~~~~~~~L~pGD~LfiP~gWwH~V~~l~d~~~~sIsvn~w~~~~ 316 (380)
+...+.+++||++|||++|-|.++|.++ +.=+-+|.|....
T Consensus 124 --------------------~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd--~pLvf~~v~~~~~ 164 (209)
T COG2140 124 --------------------EARVIAVRAGDVIYVPPGYGHYTINTGD--EPLVFLNVYPADA 164 (209)
T ss_pred --------------------cEEEEEecCCcEEEeCCCcceEeecCCC--CCEEEEEEEeCCC
Confidence 2356788999999999999999999975 6666667665543
No 14
>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily. Probable enzymes, but of unknown functions, that regulate chromatin reorganisation processes (Clissold and Ponting, in press).
Probab=96.59 E-value=0.0014 Score=47.16 Aligned_cols=30 Identities=30% Similarity=0.475 Sum_probs=25.5
Q ss_pred CceEEEecCCCCcccccccCCC--ceEEEEee
Q 016948 169 EAVNLWIGNQLSETSFHKDHYE--NLYTVVSG 198 (380)
Q Consensus 169 ~~~~lwiG~~gs~t~lH~D~~~--n~~~qv~G 198 (380)
...++|||+.+|.|++|+|+++ |++.++.|
T Consensus 26 ~~~~~~~G~~~s~t~~H~d~~~~~n~~~~~~~ 57 (57)
T smart00558 26 DVPYLYMGMAGSVTPWHIDDYDLVNYLHQGAG 57 (57)
T ss_pred CcceEEEeCCCCccceeEcCCCeEEEEEecCC
Confidence 3488999999999999999999 77776654
No 15
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=96.26 E-value=0.01 Score=51.09 Aligned_cols=68 Identities=15% Similarity=0.248 Sum_probs=46.0
Q ss_pred CCCCcccccccCCCceEEEEeeeEEEEEeCCCCcCCCcccccCCccccccccCCCcceeeeecCCcccccccccCCCCCc
Q 016948 177 NQLSETSFHKDHYENLYTVVSGQKHFLLLPPTDVHRMYIRQYPAAHYSYSRVNDVERFTLELEEPVRYVPWCSVNPYPSP 256 (380)
Q Consensus 177 ~~gs~t~lH~D~~~n~~~qv~G~K~~~L~pP~~~~~Ly~~~~p~~~~~~~~~~~~~~~~~~~d~p~~~~~~s~vd~~~~~ 256 (380)
.+|+....|+....-++.+++|+=++.++.|.... .. .+
T Consensus 42 ~pg~~~~Ph~h~a~~i~~V~~G~~~~~~v~~~~~~----~~----------------~~--------------------- 80 (144)
T PF00190_consen 42 EPGGLRAPHYHNADEIVYVIEGRGRVGVVGPGGPQ----EE----------------FR--------------------- 80 (144)
T ss_dssp ETTEEEEEEEESSEEEEEEEESEEEEEEEETTCSS----SE----------------EE---------------------
T ss_pred hcCCccceeEeeeeEEeeeeccceEEEEEecCCcc----cc----------------ce---------------------
Confidence 45677777888445789999999998887665421 00 00
Q ss_pred cccchhhccCCCCCCCCCCeEEEEcCCCeEeeCCCceeeeeecCC
Q 016948 257 ETRESEMAKFPLYFNGPKPFECTVNAGEILYLPSMWFHHVRQSPD 301 (380)
Q Consensus 257 ~~~~~d~~~fP~f~~~~~~~~~~L~pGD~LfiP~gWwH~V~~l~d 301 (380)
....++.|++||+++||+||.|.+.|.+|
T Consensus 81 ----------------~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~ 109 (144)
T PF00190_consen 81 ----------------DFSQKVRLKAGDVFVVPAGHPHWIINDGD 109 (144)
T ss_dssp ----------------EEEEEEEEETTEEEEE-TT-EEEEEECSS
T ss_pred ----------------eeeceeeeecccceeeccceeEEEEcCCC
Confidence 00111269999999999999999999863
No 16
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=95.57 E-value=0.049 Score=40.22 Aligned_cols=25 Identities=28% Similarity=0.570 Sum_probs=23.0
Q ss_pred EEEEcCCCeEeeCCCceeeeeecCC
Q 016948 277 ECTVNAGEILYLPSMWFHHVRQSPD 301 (380)
Q Consensus 277 ~~~L~pGD~LfiP~gWwH~V~~l~d 301 (380)
...|++||+++||++-+|++.|..+
T Consensus 38 ~~~l~~Gd~~~i~~~~~H~~~n~~~ 62 (71)
T PF07883_consen 38 RVELKPGDAIYIPPGVPHQVRNPGD 62 (71)
T ss_dssp EEEEETTEEEEEETTSEEEEEEESS
T ss_pred EeEccCCEEEEECCCCeEEEEECCC
Confidence 5689999999999999999999864
No 17
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=95.52 E-value=0.11 Score=47.06 Aligned_cols=37 Identities=19% Similarity=0.396 Sum_probs=29.3
Q ss_pred CeEEEEcCCCeEeeCCCceeeeeecCCCCCeEEEEEeee
Q 016948 275 PFECTVNAGEILYLPSMWFHHVRQSPDDNGYTIALNYWY 313 (380)
Q Consensus 275 ~~~~~L~pGD~LfiP~gWwH~V~~l~d~~~~sIsvn~w~ 313 (380)
.....++|||++|||++|-|.++|.++ +.-+-+++|.
T Consensus 119 ~~~~~v~pGd~v~IPpg~~H~~iN~G~--epl~fl~v~p 155 (191)
T PRK04190 119 ARWIEMEPGTVVYVPPYWAHRSVNTGD--EPLVFLACYP 155 (191)
T ss_pred EEEEEECCCCEEEECCCCcEEeEECCC--CCEEEEEEEc
Confidence 456789999999999999999999864 4555555543
No 18
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=95.32 E-value=0.083 Score=46.34 Aligned_cols=65 Identities=20% Similarity=0.332 Sum_probs=50.8
Q ss_pred eEEEecCCCCcccccccCCCceEEEEeeeEEEEEeCCCCcCCCcccccCCccccccccCCCcceeeeecCCccccccccc
Q 016948 171 VNLWIGNQLSETSFHKDHYENLYTVVSGQKHFLLLPPTDVHRMYIRQYPAAHYSYSRVNDVERFTLELEEPVRYVPWCSV 250 (380)
Q Consensus 171 ~~lwiG~~gs~t~lH~D~~~n~~~qv~G~K~~~L~pP~~~~~Ly~~~~p~~~~~~~~~~~~~~~~~~~d~p~~~~~~s~v 250 (380)
.-+.+|.+|..+.+|.+..+-|+.|+.|.=.+.+...
T Consensus 30 ~v~~vgGpn~R~d~H~~~tdE~FyqleG~~~l~v~d~------------------------------------------- 66 (159)
T TIGR03037 30 MVTVVGGPNARTDFHDDPGEEFFYQLKGEMYLKVTEE------------------------------------------- 66 (159)
T ss_pred EEEEeCCCCCCcccccCCCceEEEEEcceEEEEEEcC-------------------------------------------
Confidence 3355788899999999888899999999865443110
Q ss_pred CCCCCccccchhhccCCCCCCCCCCeEEEEcCCCeEeeCCCceeeeeecC
Q 016948 251 NPYPSPETRESEMAKFPLYFNGPKPFECTVNAGEILYLPSMWFHHVRQSP 300 (380)
Q Consensus 251 d~~~~~~~~~~d~~~fP~f~~~~~~~~~~L~pGD~LfiP~gWwH~V~~l~ 300 (380)
.+...++|++||+++||+|--|.....+
T Consensus 67 ----------------------g~~~~v~L~eGd~flvP~gvpHsP~r~~ 94 (159)
T TIGR03037 67 ----------------------GKREDVPIREGDIFLLPPHVPHSPQRPA 94 (159)
T ss_pred ----------------------CcEEEEEECCCCEEEeCCCCCcccccCC
Confidence 1234689999999999999999998864
No 19
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=95.21 E-value=0.028 Score=50.44 Aligned_cols=45 Identities=16% Similarity=0.435 Sum_probs=27.5
Q ss_pred CCeEEEEcCCCeEeeCCCceeeeeecCCCCCeEEEEEeeecCCCChhh
Q 016948 274 KPFECTVNAGEILYLPSMWFHHVRQSPDDNGYTIALNYWYDMQFDIKY 321 (380)
Q Consensus 274 ~~~~~~L~pGD~LfiP~gWwH~V~~l~d~~~~sIsvn~w~~~~~~~~~ 321 (380)
..+-+.++|||+++||++|-|.+.|.++ + ...+-+|+...+...|
T Consensus 108 ~~~~v~~~~G~~v~IPp~yaH~tIN~g~--~-~L~~~~~~~~~~g~dY 152 (182)
T PF06560_consen 108 DVIAVEAKPGDVVYIPPGYAHRTINTGD--E-PLVFAAWVPRDAGHDY 152 (182)
T ss_dssp -EEEEEE-TTEEEEE-TT-EEEEEE-SS--S--EEEEEEEETT---BC
T ss_pred eEEEEEeCCCCEEEECCCceEEEEECCC--C-cEEEEEEEecCCCCCc
Confidence 4577899999999999999999999863 3 4444556665544433
No 20
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=95.13 E-value=0.13 Score=51.53 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=23.0
Q ss_pred eEEEEcCCCeEeeCCCceeeeeecCC
Q 016948 276 FECTVNAGEILYLPSMWFHHVRQSPD 301 (380)
Q Consensus 276 ~~~~L~pGD~LfiP~gWwH~V~~l~d 301 (380)
.+..|++||++|||.|..|+++|.++
T Consensus 289 ~~~~l~~GD~~~iP~g~~H~i~N~G~ 314 (367)
T TIGR03404 289 RTFDYQAGDVGYVPRNMGHYVENTGD 314 (367)
T ss_pred EEEEECCCCEEEECCCCeEEEEECCC
Confidence 44579999999999999999999864
No 21
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=94.78 E-value=0.13 Score=45.91 Aligned_cols=65 Identities=20% Similarity=0.341 Sum_probs=51.0
Q ss_pred eEEEecCCCCcccccccCCCceEEEEeeeEEEEEeCCCCcCCCcccccCCccccccccCCCcceeeeecCCccccccccc
Q 016948 171 VNLWIGNQLSETSFHKDHYENLYTVVSGQKHFLLLPPTDVHRMYIRQYPAAHYSYSRVNDVERFTLELEEPVRYVPWCSV 250 (380)
Q Consensus 171 ~~lwiG~~gs~t~lH~D~~~n~~~qv~G~K~~~L~pP~~~~~Ly~~~~p~~~~~~~~~~~~~~~~~~~d~p~~~~~~s~v 250 (380)
.-+.+|.+|..+.+|+|+.+-|+-|+.|.=++.+...
T Consensus 36 ~VmvvgGpn~r~d~H~~~tdE~FyqleG~~~l~v~d~------------------------------------------- 72 (177)
T PRK13264 36 IVMVVGGPNARTDFHYDPGEEFFYQLEGDMYLKVQED------------------------------------------- 72 (177)
T ss_pred EEEEEccCCcccccccCCCceEEEEECCeEEEEEEcC-------------------------------------------
Confidence 3345788899999999999999999999865444210
Q ss_pred CCCCCccccchhhccCCCCCCCCCCeEEEEcCCCeEeeCCCceeeeeecC
Q 016948 251 NPYPSPETRESEMAKFPLYFNGPKPFECTVNAGEILYLPSMWFHHVRQSP 300 (380)
Q Consensus 251 d~~~~~~~~~~d~~~fP~f~~~~~~~~~~L~pGD~LfiP~gWwH~V~~l~ 300 (380)
.+...++|++||+++||+|--|.-....
T Consensus 73 ----------------------g~~~~v~L~eGd~fllP~gvpHsP~r~~ 100 (177)
T PRK13264 73 ----------------------GKRRDVPIREGEMFLLPPHVPHSPQREA 100 (177)
T ss_pred ----------------------CceeeEEECCCCEEEeCCCCCcCCccCC
Confidence 1224689999999999999999998754
No 22
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=93.95 E-value=0.42 Score=40.13 Aligned_cols=71 Identities=17% Similarity=0.166 Sum_probs=51.5
Q ss_pred eEEEecCCCCcccccccC-CCceEEEEeeeEEEEEeCCCCcCCCcccccCCccccccccCCCcceeeeecCCcccccccc
Q 016948 171 VNLWIGNQLSETSFHKDH-YENLYTVVSGQKHFLLLPPTDVHRMYIRQYPAAHYSYSRVNDVERFTLELEEPVRYVPWCS 249 (380)
Q Consensus 171 ~~lwiG~~gs~t~lH~D~-~~n~~~qv~G~K~~~L~pP~~~~~Ly~~~~p~~~~~~~~~~~~~~~~~~~d~p~~~~~~s~ 249 (380)
..++-..+|..++.|..+ ..-.+.++.|+=++.+=
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~-------------------------------------------- 80 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE-------------------------------------------- 80 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEEec--------------------------------------------
Confidence 345667888999999998 44677788887654431
Q ss_pred cCCCCCccccchhhccCCCCCCCCCCeEEEEcCCCeEeeCCCceeeeeecCCCCCeEEEEE
Q 016948 250 VNPYPSPETRESEMAKFPLYFNGPKPFECTVNAGEILYLPSMWFHHVRQSPDDNGYTIALN 310 (380)
Q Consensus 250 vd~~~~~~~~~~d~~~fP~f~~~~~~~~~~L~pGD~LfiP~gWwH~V~~l~d~~~~sIsvn 310 (380)
.-..++++||+++||+|=.|.+.+.++....-|.+.
T Consensus 81 -------------------------g~~~~l~~Gd~i~ip~g~~H~~~a~~~~~~~~l~v~ 116 (131)
T COG1917 81 -------------------------GEKKELKAGDVIIIPPGVVHGLKAVEDEPMVLLLVF 116 (131)
T ss_pred -------------------------CCceEecCCCEEEECCCCeeeeccCCCCceeEEEEe
Confidence 122489999999999999999999975222455544
No 23
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=92.89 E-value=0.87 Score=39.08 Aligned_cols=27 Identities=19% Similarity=0.391 Sum_probs=23.9
Q ss_pred CeEEEEcCCCeEeeCCCceeeeeecCC
Q 016948 275 PFECTVNAGEILYLPSMWFHHVRQSPD 301 (380)
Q Consensus 275 ~~~~~L~pGD~LfiP~gWwH~V~~l~d 301 (380)
.....+++||+++||++..|...|.++
T Consensus 74 ~~~~~l~~GD~~~ip~g~~H~~~n~~~ 100 (146)
T smart00835 74 VYDARLREGDVFVVPQGHPHFQVNSGD 100 (146)
T ss_pred EEEEEecCCCEEEECCCCEEEEEcCCC
Confidence 456789999999999999999999854
No 24
>KOG2508 consensus Predicted phospholipase [Lipid transport and metabolism]
Probab=92.56 E-value=0.23 Score=48.61 Aligned_cols=52 Identities=33% Similarity=0.787 Sum_probs=40.4
Q ss_pred ccCCCCCCCCCCeEEEEcCCCeEeeCCCceeeeeecCCC---CCeEEEEEeeecCC
Q 016948 264 AKFPLYFNGPKPFECTVNAGEILYLPSMWFHHVRQSPDD---NGYTIALNYWYDMQ 316 (380)
Q Consensus 264 ~~fP~f~~~~~~~~~~L~pGD~LfiP~gWwH~V~~l~d~---~~~sIsvn~w~~~~ 316 (380)
.++-.++ +.-.+.+++++|+++|+|.-|.|.|++-..+ ....|++|+|+...
T Consensus 350 ~~l~~lA-~~~~l~v~~~~~~~~~l~~~~~~~~~~~~~ssg~~~v~l~~~y~~~~~ 404 (437)
T KOG2508|consen 350 DELSALA-GTVPLVVDLEPGDMLYLPASWFHEVTSSSASSGGSDVHIAFNYWFHPE 404 (437)
T ss_pred hhccccc-cceeEEEecccCceeeechhheeeeeccccccCCcceeEEeecccccc
Confidence 3443343 2568999999999999999999999976432 24789999999864
No 25
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=92.54 E-value=0.69 Score=46.29 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=22.1
Q ss_pred eEEEEcCCCeEeeCCCceeeeeecC
Q 016948 276 FECTVNAGEILYLPSMWFHHVRQSP 300 (380)
Q Consensus 276 ~~~~L~pGD~LfiP~gWwH~V~~l~ 300 (380)
+..+|++||++|||+|..|..++.+
T Consensus 110 ~~~~L~~GD~~~fP~g~~H~~~n~~ 134 (367)
T TIGR03404 110 YIDDVGAGDLWYFPPGIPHSLQGLD 134 (367)
T ss_pred EEeEECCCCEEEECCCCeEEEEECC
Confidence 3348999999999999999999984
No 26
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=92.44 E-value=0.15 Score=42.24 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=23.6
Q ss_pred eEEEEcCCCeEeeCCCceeeeeecCC
Q 016948 276 FECTVNAGEILYLPSMWFHHVRQSPD 301 (380)
Q Consensus 276 ~~~~L~pGD~LfiP~gWwH~V~~l~d 301 (380)
.+++..|||.+|||+|-.|+-.|+++
T Consensus 88 ~ha~~~pGDf~YiPpgVPHqp~N~S~ 113 (142)
T COG4101 88 EHAEVGPGDFFYIPPGVPHQPANLST 113 (142)
T ss_pred eeEEecCCCeEEcCCCCCCcccccCC
Confidence 56789999999999999999999964
No 27
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=92.04 E-value=0.27 Score=41.42 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=23.0
Q ss_pred eEEEEcCCCeEeeCCCceeeeeecC
Q 016948 276 FECTVNAGEILYLPSMWFHHVRQSP 300 (380)
Q Consensus 276 ~~~~L~pGD~LfiP~gWwH~V~~l~ 300 (380)
-.+.|++||++|||+|-.|.++|..
T Consensus 75 ~~~~v~~gd~~~iP~g~~H~~~N~G 99 (127)
T COG0662 75 EEVEVKAGDSVYIPAGTPHRVRNTG 99 (127)
T ss_pred EEEEecCCCEEEECCCCcEEEEcCC
Confidence 4579999999999999999999985
No 28
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=91.94 E-value=1.5 Score=38.01 Aligned_cols=76 Identities=22% Similarity=0.446 Sum_probs=42.4
Q ss_pred ceEEEec--CCCCcccccccCCCceEEEEeeeEEEEEeCCCCcCCCcccccCCccccccccCCCcceeeeecCCcccccc
Q 016948 170 AVNLWIG--NQLSETSFHKDHYENLYTVVSGQKHFLLLPPTDVHRMYIRQYPAAHYSYSRVNDVERFTLELEEPVRYVPW 247 (380)
Q Consensus 170 ~~~lwiG--~~gs~t~lH~D~~~n~~~qv~G~K~~~L~pP~~~~~Ly~~~~p~~~~~~~~~~~~~~~~~~~d~p~~~~~~ 247 (380)
...+|+- ++|+.||.|+..++-.+.+++|+=...|.....
T Consensus 43 evEVwlQTfAPG~~TPiHRHsCEEVFvVLkG~GTl~l~~~~~-------------------------------------- 84 (167)
T PF02041_consen 43 EVEVWLQTFAPGSATPIHRHSCEEVFVVLKGSGTLYLASSHE-------------------------------------- 84 (167)
T ss_dssp SEEEEEEEE-TT-B--EEEESS-EEEEEEE--EEEEE--SSS--------------------------------------
T ss_pred eeeEEeeeecCCCCCCCccccccEEEEEEecceEEEEecccc--------------------------------------
Confidence 3455653 578999999999999999999998877751111
Q ss_pred cccCCCCCccccchhhccCCCCCCCCCCeEEEEcCCCeEeeCCCceeeeeecCCCCCe
Q 016948 248 CSVNPYPSPETRESEMAKFPLYFNGPKPFECTVNAGEILYLPSMWFHHVRQSPDDNGY 305 (380)
Q Consensus 248 s~vd~~~~~~~~~~d~~~fP~f~~~~~~~~~~L~pGD~LfiP~gWwH~V~~l~d~~~~ 305 (380)
+|| ..+.++...|++.++||.+--|||.|.+...++
T Consensus 85 -----------------~~p-----G~pqef~~~pnSTf~IPvn~~HQv~NT~e~eDl 120 (167)
T PF02041_consen 85 -----------------KYP-----GKPQEFPIFPNSTFHIPVNDAHQVWNTNEHEDL 120 (167)
T ss_dssp -----------------SS-------S-EEEEE-TTEEEEE-TT--EEEE---SSS-E
T ss_pred -----------------cCC-----CCceEEEecCCCeEEeCCCCcceeecCCCCcce
Confidence 121 356788899999999999999999998532333
No 29
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=91.32 E-value=0.7 Score=45.56 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=22.7
Q ss_pred eEEEEcCCCeEeeCCCceeeeeecCC
Q 016948 276 FECTVNAGEILYLPSMWFHHVRQSPD 301 (380)
Q Consensus 276 ~~~~L~pGD~LfiP~gWwH~V~~l~d 301 (380)
.++.+++||++++|++.||.-.|.+|
T Consensus 120 ~~~~~~~gD~~~tP~w~wH~H~n~~d 145 (335)
T TIGR02272 120 ERTTMHPGDFIITPSWTWHDHGNPGD 145 (335)
T ss_pred EEEeeeCCCEEEeCCCeeEecccCCC
Confidence 46789999999999999999888753
No 30
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=90.88 E-value=0.86 Score=39.41 Aligned_cols=68 Identities=18% Similarity=0.343 Sum_probs=44.4
Q ss_pred CceEEEecCCCCcccccccCCCceEEEEeeeEEEEEeCCCCcCCCcccccCCccccccccCCCcceeeeecCCccccccc
Q 016948 169 EAVNLWIGNQLSETSFHKDHYENLYTVVSGQKHFLLLPPTDVHRMYIRQYPAAHYSYSRVNDVERFTLELEEPVRYVPWC 248 (380)
Q Consensus 169 ~~~~lwiG~~gs~t~lH~D~~~n~~~qv~G~K~~~L~pP~~~~~Ly~~~~p~~~~~~~~~~~~~~~~~~~d~p~~~~~~s 248 (380)
...-+.+|.++.++-.|+|..+=|+-|+.|.=...+...
T Consensus 33 ~f~VmvVGGPN~R~DyHine~eE~FyQ~kG~m~Lkv~e~----------------------------------------- 71 (151)
T PF06052_consen 33 DFIVMVVGGPNQRTDYHINETEEFFYQLKGDMCLKVVED----------------------------------------- 71 (151)
T ss_dssp SEEEEEEESSB--SSEEE-SS-EEEEEEES-EEEEEEET-----------------------------------------
T ss_pred CeEEEEEcCCCCCCccccCCcceEEEEEeCcEEEEEEeC-----------------------------------------
Confidence 345577899999999999999999999999754433110
Q ss_pred ccCCCCCccccchhhccCCCCCCCCCCeEEEEcCCCeEeeCCCceeeeeecCC
Q 016948 249 SVNPYPSPETRESEMAKFPLYFNGPKPFECTVNAGEILYLPSMWFHHVRQSPD 301 (380)
Q Consensus 249 ~vd~~~~~~~~~~d~~~fP~f~~~~~~~~~~L~pGD~LfiP~gWwH~V~~l~d 301 (380)
.+.-++.+++||+-++|++-.|.-.-..+
T Consensus 72 ------------------------g~~kdi~I~EGe~fLLP~~vpHsP~R~~~ 100 (151)
T PF06052_consen 72 ------------------------GKFKDIPIREGEMFLLPANVPHSPQRPAD 100 (151)
T ss_dssp ------------------------TEEEEEEE-TTEEEEE-TT--EEEEE-TT
T ss_pred ------------------------CceEEEEeCCCcEEecCCCCCCCCcCCCC
Confidence 12347899999999999999999887653
No 31
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=89.90 E-value=2.2 Score=38.06 Aligned_cols=89 Identities=21% Similarity=0.211 Sum_probs=61.1
Q ss_pred CceEEEecCCCCcccccccCCC-c-eEEEEeeeEEEEEeCCCCcCCCcccccCCccccccccCCCcceeeeecCCccccc
Q 016948 169 EAVNLWIGNQLSETSFHKDHYE-N-LYTVVSGQKHFLLLPPTDVHRMYIRQYPAAHYSYSRVNDVERFTLELEEPVRYVP 246 (380)
Q Consensus 169 ~~~~lwiG~~gs~t~lH~D~~~-n-~~~qv~G~K~~~L~pP~~~~~Ly~~~~p~~~~~~~~~~~~~~~~~~~d~p~~~~~ 246 (380)
...|+.++.+|+.-.+||..-. + +++.++|+=..+++......
T Consensus 45 ~Q~n~S~S~~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~S----------------------------------- 89 (173)
T COG1898 45 VQDNHSFSYPGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDS----------------------------------- 89 (173)
T ss_pred ccceEEEecCCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCC-----------------------------------
Confidence 4567888889999999999855 3 67777887766664432110
Q ss_pred ccccCCCCCccccchhhccCCCCCCCCCCeEEEEcCC--CeEeeCCCceeeeeecCCCCCeEEEEEeeecCCCCh
Q 016948 247 WCSVNPYPSPETRESEMAKFPLYFNGPKPFECTVNAG--EILYLPSMWFHHVRQSPDDNGYTIALNYWYDMQFDI 319 (380)
Q Consensus 247 ~s~vd~~~~~~~~~~d~~~fP~f~~~~~~~~~~L~pG--D~LfiP~gWwH~V~~l~d~~~~sIsvn~w~~~~~~~ 319 (380)
|.| .....++|.+- .+|+||.|+.|-..+++| +..+.||....|+.
T Consensus 90 --------------------pTy---g~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d----~~~~~y~~~~~Y~p 137 (173)
T COG1898 90 --------------------PTY---GKWVGVVLSAENKRQLYIPPGFAHGFQVLSD----DAEVVYKVTEEYDP 137 (173)
T ss_pred --------------------CCc---ceEEEEEecCCCceEEEeCCcccceeEEccC----ceEEEEEecceeCc
Confidence 112 22344556655 799999999999999975 22777777766654
No 32
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=88.67 E-value=3.3 Score=37.10 Aligned_cols=88 Identities=15% Similarity=0.095 Sum_probs=58.4
Q ss_pred CceEEEecCCCCcccccccC---CCceEEEEeeeEEEEEeCCCCcCCCcccccCCccccccccCCCcceeeeecCCcccc
Q 016948 169 EAVNLWIGNQLSETSFHKDH---YENLYTVVSGQKHFLLLPPTDVHRMYIRQYPAAHYSYSRVNDVERFTLELEEPVRYV 245 (380)
Q Consensus 169 ~~~~lwiG~~gs~t~lH~D~---~~n~~~qv~G~K~~~L~pP~~~~~Ly~~~~p~~~~~~~~~~~~~~~~~~~d~p~~~~ 245 (380)
...|+-++.+|+.-.+|+.. ..=++..++|+=.-+++.....
T Consensus 44 ~Q~n~S~S~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~----------------------------------- 88 (176)
T TIGR01221 44 VQDNHSKSYKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRN----------------------------------- 88 (176)
T ss_pred ceeEEEEecCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCC-----------------------------------
Confidence 46677788889999999974 2357888888877666544321
Q ss_pred cccccCCCCCccccchhhccCCCCCCCCCCeEEEEcC--CCeEeeCCCceeeeeecCCCCCeEEEEEeeecCCCC
Q 016948 246 PWCSVNPYPSPETRESEMAKFPLYFNGPKPFECTVNA--GEILYLPSMWFHHVRQSPDDNGYTIALNYWYDMQFD 318 (380)
Q Consensus 246 ~~s~vd~~~~~~~~~~d~~~fP~f~~~~~~~~~~L~p--GD~LfiP~gWwH~V~~l~d~~~~sIsvn~w~~~~~~ 318 (380)
-|.| .+...+.|.+ +-+||||+|.+|-..++++ ...+.|-....|+
T Consensus 89 --------------------SpTf---G~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d----~a~v~Y~~~~~y~ 136 (176)
T TIGR01221 89 --------------------SPTF---GKWVGVLLSAENKRQLWIPEGFAHGFVVLSD----EAEFLYKCTDYYA 136 (176)
T ss_pred --------------------cCCC---CeEEEEEECCCCCCEEEeCCcceeEEEEcCC----CeEEEEeCCCCcC
Confidence 0112 2345566766 6699999999999999964 2334444444444
No 33
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=85.27 E-value=9 Score=34.25 Aligned_cols=75 Identities=16% Similarity=0.165 Sum_probs=52.1
Q ss_pred CceEEEecCCCCcccccccCCC----ceEEEEeeeEEEEEeCCCCcCCCcccccCCccccccccCCCcceeeeecCCccc
Q 016948 169 EAVNLWIGNQLSETSFHKDHYE----NLYTVVSGQKHFLLLPPTDVHRMYIRQYPAAHYSYSRVNDVERFTLELEEPVRY 244 (380)
Q Consensus 169 ~~~~lwiG~~gs~t~lH~D~~~----n~~~qv~G~K~~~L~pP~~~~~Ly~~~~p~~~~~~~~~~~~~~~~~~~d~p~~~ 244 (380)
...|+-++.+|+.-.+|+.... =++..++|+=.-+++.... +
T Consensus 43 ~q~n~S~s~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~--------------------~-------------- 88 (176)
T PF00908_consen 43 VQDNISVSKKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRK--------------------G-------------- 88 (176)
T ss_dssp EEEEEEEEETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BT--------------------T--------------
T ss_pred CceEEEEccccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCC--------------------C--------------
Confidence 4567888888999999998754 3778888876655542211 0
Q ss_pred ccccccCCCCCccccchhhccCCCCCCCCCCeEEEEcCCC--eEeeCCCceeeeeecCC
Q 016948 245 VPWCSVNPYPSPETRESEMAKFPLYFNGPKPFECTVNAGE--ILYLPSMWFHHVRQSPD 301 (380)
Q Consensus 245 ~~~s~vd~~~~~~~~~~d~~~fP~f~~~~~~~~~~L~pGD--~LfiP~gWwH~V~~l~d 301 (380)
-|.| -+...++|.+++ +||||+|.+|-..++++
T Consensus 89 ---------------------SpTf---g~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d 123 (176)
T PF00908_consen 89 ---------------------SPTF---GKWVSVELSAENPRQLYIPPGVAHGFQTLED 123 (176)
T ss_dssp ---------------------STTT---T-EEEEEEETTT--EEEE-TTEEEEEEESSS
T ss_pred ---------------------CCCC---CEEEEEEeCccccCEEEeCCcceeeEEeccC
Confidence 0222 345677887776 79999999999999974
No 34
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=84.10 E-value=1.7 Score=36.84 Aligned_cols=39 Identities=18% Similarity=0.344 Sum_probs=18.9
Q ss_pred eEEEEcCC-CeEeeCCCceeeeeecCCCCCeEEEEEeeecCCCC
Q 016948 276 FECTVNAG-EILYLPSMWFHHVRQSPDDNGYTIALNYWYDMQFD 318 (380)
Q Consensus 276 ~~~~L~pG-D~LfiP~gWwH~V~~l~d~~~~sIsvn~w~~~~~~ 318 (380)
.+++|... ..|+||+|+||...+++. + +|-+.+ -...||
T Consensus 76 ~~~~L~~~~~~L~Ippg~w~~~~~~s~--~-svlLv~-as~~yd 115 (131)
T PF05523_consen 76 EEFILDEPNKGLYIPPGVWHGIKNFSE--D-SVLLVL-ASEPYD 115 (131)
T ss_dssp EEEEE--TTEEEEE-TT-EEEEE---T--T--EEEEE-ESS---
T ss_pred EEEEECCCCeEEEECCchhhHhhccCC--C-cEEEEE-cCCCCC
Confidence 45566555 489999999999999963 3 555543 333344
No 35
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=83.14 E-value=0.82 Score=34.70 Aligned_cols=19 Identities=32% Similarity=0.679 Sum_probs=15.5
Q ss_pred CCeEEEEcCCCeEeeCCCc
Q 016948 274 KPFECTVNAGEILYLPSMW 292 (380)
Q Consensus 274 ~~~~~~L~pGD~LfiP~gW 292 (380)
..-..+++|||++|+|+||
T Consensus 42 ~G~~~~~~aGD~~~~p~G~ 60 (74)
T PF05899_consen 42 DGETVTFKAGDAFFLPKGW 60 (74)
T ss_dssp TTEEEEEETTEEEEE-TTE
T ss_pred CCCEEEEcCCcEEEECCCC
Confidence 3455899999999999999
No 36
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=81.67 E-value=1.8 Score=34.73 Aligned_cols=38 Identities=21% Similarity=0.434 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCeEeeCCCceeeeeecCCC-CCeEEEEE
Q 016948 273 PKPFECTVNAGEILYLPSMWFHHVRQSPDD-NGYTIALN 310 (380)
Q Consensus 273 ~~~~~~~L~pGD~LfiP~gWwH~V~~l~d~-~~~sIsvn 310 (380)
...+.+..++||+|+.|+.-+|.|.....+ .-+|||+|
T Consensus 63 ~~~~~~~p~~G~lvlFPs~l~H~v~p~~~~~~RisisfN 101 (101)
T PF13759_consen 63 SPYYIVEPEEGDLVLFPSWLWHGVPPNNSDEERISISFN 101 (101)
T ss_dssp -SEEEE---TTEEEEEETTSEEEE----SSS-EEEEEEE
T ss_pred CceEEeCCCCCEEEEeCCCCEEeccCcCCCCCEEEEEcC
Confidence 456788999999999999999999876431 33555554
No 37
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=80.09 E-value=1.8 Score=36.52 Aligned_cols=24 Identities=17% Similarity=0.109 Sum_probs=22.3
Q ss_pred eEEEEcCCCeEeeCCCceeeeeec
Q 016948 276 FECTVNAGEILYLPSMWFHHVRQS 299 (380)
Q Consensus 276 ~~~~L~pGD~LfiP~gWwH~V~~l 299 (380)
-+..|+|||++|+|++=.|..+|.
T Consensus 75 ~~~~L~aGD~i~~~~~~~H~~~N~ 98 (125)
T PRK13290 75 EVHPIRPGTMYALDKHDRHYLRAG 98 (125)
T ss_pred EEEEeCCCeEEEECCCCcEEEEcC
Confidence 457999999999999999999997
No 38
>KOG0958 consensus DNA damage-responsive repressor GIS1/RPH1, jumonji superfamily [Replication, recombination and repair]
Probab=77.80 E-value=1.8 Score=45.91 Aligned_cols=105 Identities=13% Similarity=0.175 Sum_probs=66.3
Q ss_pred CceEEEecCCCCcccccccCCC--ceEEEEee-eEEEEEeCCCCcCCCcccccCCccccccccCCCcceeeeecCCcccc
Q 016948 169 EAVNLWIGNQLSETSFHKDHYE--NLYTVVSG-QKHFLLLPPTDVHRMYIRQYPAAHYSYSRVNDVERFTLELEEPVRYV 245 (380)
Q Consensus 169 ~~~~lwiG~~gs~t~lH~D~~~--n~~~qv~G-~K~~~L~pP~~~~~Ly~~~~p~~~~~~~~~~~~~~~~~~~d~p~~~~ 245 (380)
....|++|.=-+.-++|.+.++ .++....| -|.|..+||+...+++- +-...++. ..
T Consensus 173 Nt~yLyfGmwKttFaWHtEdmDLySINyLHFGaPK~WYaIP~eh~~rfek--la~~~fp~-----~~------------- 232 (690)
T KOG0958|consen 173 NTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGAPKQWYAIPPEHGDRFEK--LASELFPD-----SS------------- 232 (690)
T ss_pred CccceeeeeeecccccccCCccceeeeeeecCCCcceeecCHHHHHHHHH--HHHhhCCc-----cc-------------
Confidence 4567999988888999999866 66555556 59999999998866541 11111110 00
Q ss_pred cccccCCCCC--ccccchh-hccCCCCCCCCCCeEEEEcCCCeEeeCCCceeeeeecC
Q 016948 246 PWCSVNPYPS--PETRESE-MAKFPLYFNGPKPFECTVNAGEILYLPSMWFHHVRQSP 300 (380)
Q Consensus 246 ~~s~vd~~~~--~~~~~~d-~~~fP~f~~~~~~~~~~L~pGD~LfiP~gWwH~V~~l~ 300 (380)
|..-+ |.. --...|. +.+ +|.+..++|+++||.+.-=++=||.--|++
T Consensus 233 -~~C~a-FLRHK~~LiSP~~Lkq-----nGIpfn~ivqeagEFmITFPygyHaGFN~G 283 (690)
T KOG0958|consen 233 -QGCPA-FLRHKMTLISPSVLKQ-----NGIPFNRIVQEAGEFMITFPYGYHAGFNHG 283 (690)
T ss_pred -cCCHH-HHhhcccccCHHHHHH-----cCCCcceeeecCCcEEEecCcccccccccc
Confidence 00000 000 0001122 222 357788999999999998888899999985
No 39
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=77.78 E-value=1.8 Score=36.06 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=17.9
Q ss_pred CeEEEEcCCCeEeeCCCceeee
Q 016948 275 PFECTVNAGEILYLPSMWFHHV 296 (380)
Q Consensus 275 ~~~~~L~pGD~LfiP~gWwH~V 296 (380)
.--+.++|||.+|+|+||.=-=
T Consensus 81 Ge~v~~~aGD~~~~~~G~~g~W 102 (116)
T COG3450 81 GEPVEVRAGDSFVFPAGFKGTW 102 (116)
T ss_pred CeEEEEcCCCEEEECCCCeEEE
Confidence 4557999999999999996433
No 40
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=77.68 E-value=3.8 Score=36.61 Aligned_cols=27 Identities=11% Similarity=0.080 Sum_probs=23.9
Q ss_pred CeEEEEcCCCeEeeCCCceeeeeecCC
Q 016948 275 PFECTVNAGEILYLPSMWFHHVRQSPD 301 (380)
Q Consensus 275 ~~~~~L~pGD~LfiP~gWwH~V~~l~d 301 (380)
.-...|++||++|+|++-.|...|.++
T Consensus 145 ~~~~~l~~Gd~~~~~~~~~H~~~n~~~ 171 (185)
T PRK09943 145 GQDYHLVAGQSYAINTGIPHSFSNTSA 171 (185)
T ss_pred CEEEEecCCCEEEEcCCCCeeeeCCCC
Confidence 466799999999999999999999753
No 41
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=77.44 E-value=3 Score=38.15 Aligned_cols=38 Identities=18% Similarity=0.357 Sum_probs=29.4
Q ss_pred eEEEEcCCCeEeeCCCceeeeeecCC-CCCeEEEEEeee
Q 016948 276 FECTVNAGEILYLPSMWFHHVRQSPD-DNGYTIALNYWY 313 (380)
Q Consensus 276 ~~~~L~pGD~LfiP~gWwH~V~~l~d-~~~~sIsvn~w~ 313 (380)
+.+.-++|++|+.|+.-||.|....+ ..-+|||.|+.+
T Consensus 162 ~~v~P~~G~lvlFPS~L~H~v~p~~~~~~RISiSFNl~~ 200 (201)
T TIGR02466 162 VYVPPQEGRVLLFESWLRHEVPPNESEEERISVSFNYAW 200 (201)
T ss_pred EEECCCCCeEEEECCCCceecCCCCCCCCEEEEEEeeEe
Confidence 34556999999999999999997643 345788888754
No 42
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=77.40 E-value=2.5 Score=37.18 Aligned_cols=28 Identities=21% Similarity=0.473 Sum_probs=24.9
Q ss_pred CCCeEEEEcCCCeEeeCCCceeeeeecC
Q 016948 273 PKPFECTVNAGEILYLPSMWFHHVRQSP 300 (380)
Q Consensus 273 ~~~~~~~L~pGD~LfiP~gWwH~V~~l~ 300 (380)
...+++-++.||+++||+|-+|.....+
T Consensus 113 d~WIRi~vekGDlivlPaGiyHRFTtt~ 140 (179)
T KOG2107|consen 113 DQWIRIFVEKGDLIVLPAGIYHRFTTTP 140 (179)
T ss_pred CCEEEEEEecCCEEEecCcceeeeecCc
Confidence 5678999999999999999999998753
No 43
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=76.94 E-value=5.2 Score=34.85 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=22.7
Q ss_pred eEEEEcCCCeEeeCCCceeeeeecCC
Q 016948 276 FECTVNAGEILYLPSMWFHHVRQSPD 301 (380)
Q Consensus 276 ~~~~L~pGD~LfiP~gWwH~V~~l~d 301 (380)
-...|.+||.+|||.|-.|.+.|.++
T Consensus 102 ~~~~~~~g~sv~Ip~g~~H~i~n~g~ 127 (151)
T PF01050_consen 102 EEFTLKEGDSVYIPRGAKHRIENPGK 127 (151)
T ss_pred EEEEEcCCCEEEECCCCEEEEECCCC
Confidence 44589999999999999999999753
No 44
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=74.48 E-value=3.3 Score=36.38 Aligned_cols=25 Identities=12% Similarity=0.298 Sum_probs=19.1
Q ss_pred CeEEEEcCCCeEeeCCCceeeeeec
Q 016948 275 PFECTVNAGEILYLPSMWFHHVRQS 299 (380)
Q Consensus 275 ~~~~~L~pGD~LfiP~gWwH~V~~l 299 (380)
..++.+++||+|.||+|-+|...--
T Consensus 114 wiri~~e~GDli~vP~g~~HrF~~~ 138 (157)
T PF03079_consen 114 WIRILCEKGDLIVVPAGTYHRFTLG 138 (157)
T ss_dssp EEEEEEETTCEEEE-TT--EEEEES
T ss_pred EEEEEEcCCCEEecCCCCceeEEcC
Confidence 4569999999999999999999854
No 45
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=74.23 E-value=21 Score=27.76 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=22.4
Q ss_pred CeEEEEcCCCeEeeCCCceeeeeecCC
Q 016948 275 PFECTVNAGEILYLPSMWFHHVRQSPD 301 (380)
Q Consensus 275 ~~~~~L~pGD~LfiP~gWwH~V~~l~d 301 (380)
.-++.+.+|+.-+||+.-||.|..+++
T Consensus 49 ~~~~~~~~~~~~~i~Pq~wH~V~p~s~ 75 (82)
T PF09313_consen 49 EEEVFIPAGQPPVIEPQQWHRVEPLSD 75 (82)
T ss_dssp SEEEEEETTEEEEE-TT-EEEEEESST
T ss_pred eEEEEeCCCCCceeCCCceEEEEECCC
Confidence 467899999999999999999999874
No 46
>PLN00212 glutelin; Provisional
Probab=74.21 E-value=10 Score=39.49 Aligned_cols=26 Identities=15% Similarity=0.376 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCeEeeCCCceeeeeec
Q 016948 274 KPFECTVNAGEILYLPSMWFHHVRQS 299 (380)
Q Consensus 274 ~~~~~~L~pGD~LfiP~gWwH~V~~l 299 (380)
+.+..+|++||+++||.|+.|...+-
T Consensus 391 ~vf~~~L~~GdvfVVPqg~~v~~~A~ 416 (493)
T PLN00212 391 TVFNGVLRPGQLLIIPQHYAVLKKAE 416 (493)
T ss_pred EEEEEEEcCCCEEEECCCCeEEEeec
Confidence 45777999999999999999988775
No 47
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=74.05 E-value=5.5 Score=32.27 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=17.9
Q ss_pred eEEEEcCCCeEeeCCCceeeeeecC
Q 016948 276 FECTVNAGEILYLPSMWFHHVRQSP 300 (380)
Q Consensus 276 ~~~~L~pGD~LfiP~gWwH~V~~l~ 300 (380)
-+..++|||+++||++=.|.....+
T Consensus 41 ~~~~l~~g~~~li~p~~~H~~~~~~ 65 (136)
T PF02311_consen 41 QEYPLKPGDLFLIPPGQPHSYYPDS 65 (136)
T ss_dssp EEEEE-TT-EEEE-TTS-EEEEE-T
T ss_pred EEEEEECCEEEEecCCccEEEecCC
Confidence 4579999999999999999999875
No 48
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=72.27 E-value=10 Score=35.03 Aligned_cols=89 Identities=18% Similarity=0.175 Sum_probs=47.2
Q ss_pred ceEEEecCCCCcccccccCC--CceEEEEeeeEEEEEeCCCCcCCCcccccCCccccccccCCCcceeeeecCCcccccc
Q 016948 170 AVNLWIGNQLSETSFHKDHY--ENLYTVVSGQKHFLLLPPTDVHRMYIRQYPAAHYSYSRVNDVERFTLELEEPVRYVPW 247 (380)
Q Consensus 170 ~~~lwiG~~gs~t~lH~D~~--~n~~~qv~G~K~~~L~pP~~~~~Ly~~~~p~~~~~~~~~~~~~~~~~~~d~p~~~~~~ 247 (380)
.--+.|...|..||+|+... +.+..---|.=.+.||-......+-. + +...+.+|.
T Consensus 88 AEKim~~~~~Q~tP~H~H~~K~EDIINRGGG~L~i~l~~s~~~~~~~~--------------~-~~v~V~~DG------- 145 (225)
T PF07385_consen 88 AEKIMIVREGQVTPMHFHWKKMEDIINRGGGNLVIELYNSDPDGELDA--------------D-TDVTVPVDG------- 145 (225)
T ss_dssp EEEEEEE-BT-EEEEEEESS--EEEEEEEES-EEEEEEEB--TTSSB---------------S-S-EEEEETT-------
T ss_pred hhhheeccCCCcCCcccCcchhhheeecCCceEEEEEEeccCCCcccc--------------C-CCeEEecCC-------
Confidence 33566788889999999873 45655555666667765543222210 0 111111111
Q ss_pred cccCCCCCccccchhhccCCCCCCCCCCeEEEEcCCCeEeeCCCceeeeeecC
Q 016948 248 CSVNPYPSPETRESEMAKFPLYFNGPKPFECTVNAGEILYLPSMWFHHVRQSP 300 (380)
Q Consensus 248 s~vd~~~~~~~~~~d~~~fP~f~~~~~~~~~~L~pGD~LfiP~gWwH~V~~l~ 300 (380)
....+ +.+-.++|.||+-+-||+|-||.-..-.
T Consensus 146 --------------~~~t~------~aG~~l~L~PGESiTL~Pg~yH~Fw~e~ 178 (225)
T PF07385_consen 146 --------------IRRTV------PAGTQLRLNPGESITLPPGIYHWFWGEG 178 (225)
T ss_dssp --------------EEEEE-------TT-EEEE-TT-EEEE-TTEEEEEEE-T
T ss_pred --------------cEEEe------cCCceEEeCCCCeEeeCCCCeeeEEecC
Confidence 01122 4567899999999999999999998864
No 49
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=69.09 E-value=4.2 Score=37.82 Aligned_cols=26 Identities=12% Similarity=0.192 Sum_probs=21.8
Q ss_pred CCCeEEEEcCCCeEeeCCCceeeeee
Q 016948 273 PKPFECTVNAGEILYLPSMWFHHVRQ 298 (380)
Q Consensus 273 ~~~~~~~L~pGD~LfiP~gWwH~V~~ 298 (380)
...-+.+++|||+||||.|-.|+-.+
T Consensus 190 IdG~t~~l~pGDvlfIPkGs~~hf~t 215 (233)
T PRK15457 190 HEGETMIAKAGDVMFIPKGSSIEFGT 215 (233)
T ss_pred ECCEEEEeCCCcEEEECCCCeEEecC
Confidence 34678899999999999999977744
No 50
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=67.45 E-value=7.5 Score=36.24 Aligned_cols=40 Identities=23% Similarity=0.468 Sum_probs=34.9
Q ss_pred CeEEEEcCCCeEeeCCCceeeeeecCCCCCeEEEEEeeecCC
Q 016948 275 PFECTVNAGEILYLPSMWFHHVRQSPDDNGYTIALNYWYDMQ 316 (380)
Q Consensus 275 ~~~~~L~pGD~LfiP~gWwH~V~~l~d~~~~sIsvn~w~~~~ 316 (380)
...+.+.+|++|+.|..-+|+|.-+. .+.-+++.+|+..-
T Consensus 140 ~~~Vkp~aG~~vlfps~~lH~v~pVt--~G~R~~~~~Wi~S~ 179 (226)
T PRK05467 140 EHRVKLPAGDLVLYPSTSLHRVTPVT--RGVRVASFFWIQSL 179 (226)
T ss_pred cEEEecCCCeEEEECCCCceeeeecc--CccEEEEEecHHHH
Confidence 36788999999999999999999875 48899999998743
No 51
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=67.19 E-value=6.1 Score=31.09 Aligned_cols=33 Identities=24% Similarity=0.629 Sum_probs=27.8
Q ss_pred EcCCCeEeeCC-CceeeeeecCCCCCeEEEEEeee
Q 016948 280 VNAGEILYLPS-MWFHHVRQSPDDNGYTIALNYWY 313 (380)
Q Consensus 280 L~pGD~LfiP~-gWwH~V~~l~d~~~~sIsvn~w~ 313 (380)
-++|++++.|. ..||.|... ...+.-+++++||
T Consensus 66 p~~g~~v~F~~~~~~H~v~~v-~~~~~R~~l~~~~ 99 (100)
T PF13640_consen 66 PKPGRLVIFPSDNSLHGVTPV-GEGGRRYSLTFWF 99 (100)
T ss_dssp -BTTEEEEEESCTCEEEEEEE--EESEEEEEEEEE
T ss_pred CCCCEEEEEeCCCCeecCccc-CCCCCEEEEEEEE
Confidence 89999999999 999999998 2257889999987
No 52
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=66.80 E-value=6.1 Score=37.52 Aligned_cols=27 Identities=11% Similarity=0.103 Sum_probs=24.2
Q ss_pred CeEEEEcCCCeEeeCCCceeeeeecCC
Q 016948 275 PFECTVNAGEILYLPSMWFHHVRQSPD 301 (380)
Q Consensus 275 ~~~~~L~pGD~LfiP~gWwH~V~~l~d 301 (380)
.-...+++||++|||++--|+..|..+
T Consensus 217 g~~~~V~~GD~i~i~~~~~h~~~~~G~ 243 (260)
T TIGR03214 217 NNWVPVEAGDYIWMGAYCPQACYAGGR 243 (260)
T ss_pred CEEEEecCCCEEEECCCCCEEEEecCC
Confidence 467789999999999999999999864
No 53
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=66.26 E-value=6.8 Score=39.57 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=21.0
Q ss_pred eEEEEcCCCeEeeCCCceeeeee
Q 016948 276 FECTVNAGEILYLPSMWFHHVRQ 298 (380)
Q Consensus 276 ~~~~L~pGD~LfiP~gWwH~V~~ 298 (380)
-.+.|+|||++|||+|-.|...+
T Consensus 237 N~v~l~pGeaifipAg~~HAyl~ 259 (389)
T PRK15131 237 NVVKLNPGEAMFLFAETPHAYLQ 259 (389)
T ss_pred eEEEeCCCCEEEeCCCCCeEEcC
Confidence 37899999999999999999876
No 54
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=66.09 E-value=4.9 Score=35.08 Aligned_cols=20 Identities=15% Similarity=0.363 Sum_probs=14.5
Q ss_pred CCeEEEEcCCCeEeeCCCce
Q 016948 274 KPFECTVNAGEILYLPSMWF 293 (380)
Q Consensus 274 ~~~~~~L~pGD~LfiP~gWw 293 (380)
....++-+|||+||||.|-=
T Consensus 111 ~G~~~~A~~GDvi~iPkGs~ 130 (152)
T PF06249_consen 111 DGQTVTAKPGDVIFIPKGST 130 (152)
T ss_dssp TTEEEEEETT-EEEE-TT-E
T ss_pred CCEEEEEcCCcEEEECCCCE
Confidence 36778999999999999853
No 55
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=65.29 E-value=33 Score=30.44 Aligned_cols=37 Identities=14% Similarity=0.186 Sum_probs=27.5
Q ss_pred eEEEEcCCCeEeeCCCceeeeeecCCCCCeEEEEEeee
Q 016948 276 FECTVNAGEILYLPSMWFHHVRQSPDDNGYTIALNYWY 313 (380)
Q Consensus 276 ~~~~L~pGD~LfiP~gWwH~V~~l~d~~~~sIsvn~w~ 313 (380)
....+.+|.+.+.+.+..|+|.|... ++.+||+....
T Consensus 127 ~~~~~~~g~~~~~~~~~iH~v~n~s~-~~~avSLHvYs 163 (175)
T PF05995_consen 127 RERLLPGGVTYIFDPHGIHRVENPSG-DEPAVSLHVYS 163 (175)
T ss_dssp EEEEETTTEEEEBTTTBEEEEEES-S-SS-EEEEEEEE
T ss_pred ceEecCCCeEEecCCCCeEEeccCCC-CCCEEEEEEcC
Confidence 44567788888889999999998742 47899998754
No 56
>PF15138 Syncollin: Syncollin
Probab=65.28 E-value=5.8 Score=32.15 Aligned_cols=43 Identities=23% Similarity=0.300 Sum_probs=32.8
Q ss_pred CCCCeEEEEcCCCe-EeeCCCceeeeeecCCCCCeEEEEEeeecCC
Q 016948 272 GPKPFECTVNAGEI-LYLPSMWFHHVRQSPDDNGYTIALNYWYDMQ 316 (380)
Q Consensus 272 ~~~~~~~~L~pGD~-LfiP~gWwH~V~~l~d~~~~sIsvn~w~~~~ 316 (380)
-..+-+..++|||= =|+|.+|-|.+.+|-. ..-..+..|-...
T Consensus 31 cC~G~~l~v~pg~DlPylPs~w~n~iSSlvV--~~RCeLtVWS~~g 74 (112)
T PF15138_consen 31 CCGGAELSVEPGDDLPYLPSGWANKISSLVV--APRCELTVWSRSG 74 (112)
T ss_pred ccCCcEEeecCCCCCCcCCccccCeeeeEEE--cCceEEEEEeccC
Confidence 47788899999964 5999999999999853 3445566776544
No 57
>PLN00212 glutelin; Provisional
Probab=65.11 E-value=34 Score=35.70 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=22.0
Q ss_pred EEEcCCCeEeeCCCceeeeeecCC
Q 016948 278 CTVNAGEILYLPSMWFHHVRQSPD 301 (380)
Q Consensus 278 ~~L~pGD~LfiP~gWwH~V~~l~d 301 (380)
-.|++||++.||+|--|...|.++
T Consensus 150 ~~lr~GDViaiPaG~~hw~yN~Gd 173 (493)
T PLN00212 150 HQFRQGDVVALPAGVAHWFYNDGD 173 (493)
T ss_pred eEeccCCEEEECCCCeEEEEeCCC
Confidence 478999999999999999999875
No 58
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=64.39 E-value=5.2 Score=39.03 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=21.3
Q ss_pred eEEEEcCCCeEeeCCCceeeeeec
Q 016948 276 FECTVNAGEILYLPSMWFHHVRQS 299 (380)
Q Consensus 276 ~~~~L~pGD~LfiP~gWwH~V~~l 299 (380)
-.+.|+|||.+|||+|-.|....-
T Consensus 158 n~v~lkpGe~~fl~Agt~HA~~~G 181 (312)
T COG1482 158 NRVKLKPGEAFFLPAGTPHAYLKG 181 (312)
T ss_pred cEEecCCCCEEEecCCCceeeccc
Confidence 368999999999999999998763
No 59
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=63.74 E-value=9.9 Score=39.30 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=24.4
Q ss_pred CeEEEEcCCCeEeeCCCceeeeeecCC
Q 016948 275 PFECTVNAGEILYLPSMWFHHVRQSPD 301 (380)
Q Consensus 275 ~~~~~L~pGD~LfiP~gWwH~V~~l~d 301 (380)
.-+..|++||++|||++-.|...|.++
T Consensus 414 g~~~~l~~GDsi~ip~~~~H~~~N~g~ 440 (468)
T TIGR01479 414 DETLLLTENESTYIPLGVIHRLENPGK 440 (468)
T ss_pred CEEEEecCCCEEEECCCCcEEEEcCCC
Confidence 467789999999999999999999865
No 60
>PRK11171 hypothetical protein; Provisional
Probab=63.47 E-value=12 Score=35.67 Aligned_cols=35 Identities=14% Similarity=0.145 Sum_probs=27.0
Q ss_pred eEEEEcCCCeEeeCCCceeeeeecCCCCCeEEEEE
Q 016948 276 FECTVNAGEILYLPSMWFHHVRQSPDDNGYTIALN 310 (380)
Q Consensus 276 ~~~~L~pGD~LfiP~gWwH~V~~l~d~~~~sIsvn 310 (380)
-+.+|++||.+|+|++=.|+.+|..+....-+.|.
T Consensus 101 ~~~~L~~GDsi~~p~~~~H~~~N~g~~~a~~l~v~ 135 (266)
T PRK11171 101 KTHALSEGGYAYLPPGSDWTLRNAGAEDARFHWIR 135 (266)
T ss_pred EEEEECCCCEEEECCCCCEEEEECCCCCEEEEEEE
Confidence 46799999999999999999999865333333333
No 61
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=63.45 E-value=13 Score=35.40 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=23.0
Q ss_pred eEEEEcCCCeEeeCCCceeeeeecCC
Q 016948 276 FECTVNAGEILYLPSMWFHHVRQSPD 301 (380)
Q Consensus 276 ~~~~L~pGD~LfiP~gWwH~V~~l~d 301 (380)
-..+|++||.+|+|++--|..+|..+
T Consensus 98 ~~~~L~~Gd~~y~pa~~~H~~~N~~~ 123 (260)
T TIGR03214 98 ETHELREGGYAYLPPGSKWTLANAQA 123 (260)
T ss_pred EEEEECCCCEEEECCCCCEEEEECCC
Confidence 34699999999999999999999754
No 62
>PLN02288 mannose-6-phosphate isomerase
Probab=60.46 E-value=7.3 Score=39.36 Aligned_cols=23 Identities=30% Similarity=0.294 Sum_probs=21.0
Q ss_pred EEEEcCCCeEeeCCCceeeeeec
Q 016948 277 ECTVNAGEILYLPSMWFHHVRQS 299 (380)
Q Consensus 277 ~~~L~pGD~LfiP~gWwH~V~~l 299 (380)
.+.|+|||++|+|+|-.|.-.+-
T Consensus 252 ~v~L~PGeaifl~ag~~HAYl~G 274 (394)
T PLN02288 252 YVKLNPGEALYLGANEPHAYLSG 274 (394)
T ss_pred eEecCCCCEEEecCCCCceecCC
Confidence 78999999999999999998763
No 63
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=60.12 E-value=4.6 Score=39.18 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=18.9
Q ss_pred eEEEEcCCCeEeeCCCceeee
Q 016948 276 FECTVNAGEILYLPSMWFHHV 296 (380)
Q Consensus 276 ~~~~L~pGD~LfiP~gWwH~V 296 (380)
-.+.++|||++|||+|-.|.-
T Consensus 151 n~v~v~~Gd~i~ipaGt~HA~ 171 (302)
T TIGR00218 151 NRIKLKPGDFFYVPSGTPHAY 171 (302)
T ss_pred cccccCCCCEEEeCCCCcccc
Confidence 367899999999999999984
No 64
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=59.37 E-value=14 Score=38.31 Aligned_cols=35 Identities=14% Similarity=0.008 Sum_probs=27.4
Q ss_pred CeEEEEcCCCeEeeCCCceeeeeecCCCCCeEEEE
Q 016948 275 PFECTVNAGEILYLPSMWFHHVRQSPDDNGYTIAL 309 (380)
Q Consensus 275 ~~~~~L~pGD~LfiP~gWwH~V~~l~d~~~~sIsv 309 (380)
.-+..|+|||.+|||++--|..+|.++.+-.-|.|
T Consensus 423 g~~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~V 457 (478)
T PRK15460 423 GDIKLLGENESIYIPLGATHCLENPGKIPLDLIEV 457 (478)
T ss_pred CEEEEecCCCEEEECCCCcEEEEcCCCCCEEEEEE
Confidence 45788999999999999999999987533333333
No 65
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=54.67 E-value=8.6 Score=33.43 Aligned_cols=23 Identities=13% Similarity=0.254 Sum_probs=17.6
Q ss_pred CCeEEEEcCCCeEeeCCCceeee
Q 016948 274 KPFECTVNAGEILYLPSMWFHHV 296 (380)
Q Consensus 274 ~~~~~~L~pGD~LfiP~gWwH~V 296 (380)
..-.++-+|||++|||.|=--..
T Consensus 134 ~g~tv~a~aGDvifiPKgssIef 156 (176)
T COG4766 134 DGRTVIAGAGDVIFIPKGSSIEF 156 (176)
T ss_pred cCCeEecCCCcEEEecCCCeEEE
Confidence 35567889999999999854433
No 66
>TIGR03027 pepcterm_export putative polysaccharide export protein, PEP-CTERM sytem-associated. This protein family belongs to the larger set of polysaccharide biosynthesis/export proteins described by Pfam model pfam02563. Members of this family are variable in either containing of lacking a 78-residue insert, but appear to fall within a single clade, nevertheless, where the regions in which the gene is found encode components of the PEP-CTERM/EpsH proposed exosortase protein sorting system.
Probab=53.14 E-value=8.1 Score=33.91 Aligned_cols=18 Identities=28% Similarity=0.879 Sum_probs=15.5
Q ss_pred eEEEEcCCCeEeeCCCce
Q 016948 276 FECTVNAGEILYLPSMWF 293 (380)
Q Consensus 276 ~~~~L~pGD~LfiP~gWw 293 (380)
....|+|||++|||..|+
T Consensus 148 ~n~~L~~gD~I~Vp~~~f 165 (165)
T TIGR03027 148 ANVELKPGDVLIIPESWF 165 (165)
T ss_pred CCceeCCCCEEEEecccC
Confidence 457899999999998875
No 67
>COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=48.85 E-value=44 Score=32.35 Aligned_cols=27 Identities=11% Similarity=0.279 Sum_probs=23.8
Q ss_pred CCeEEEEcCCCeEeeCCCceeeeeecC
Q 016948 274 KPFECTVNAGEILYLPSMWFHHVRQSP 300 (380)
Q Consensus 274 ~~~~~~L~pGD~LfiP~gWwH~V~~l~ 300 (380)
....+.|++||+|+.=..-||....-.
T Consensus 191 ~~~pv~lekGDallF~~~L~HaA~aNr 217 (299)
T COG5285 191 NAVPVELEKGDALLFNGSLWHAAGANR 217 (299)
T ss_pred cceeeeecCCCEEEEcchhhhhhhcCC
Confidence 478899999999999999999998653
No 68
>PF12852 Cupin_6: Cupin
Probab=47.69 E-value=15 Score=32.46 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=22.0
Q ss_pred eEEEEcCCCeEeeCCCceeeeeecCC
Q 016948 276 FECTVNAGEILYLPSMWFHHVRQSPD 301 (380)
Q Consensus 276 ~~~~L~pGD~LfiP~gWwH~V~~l~d 301 (380)
-.+.|++||++++|.|-.|...+-.+
T Consensus 55 ~~~~L~~GDivllp~g~~H~l~~~~~ 80 (186)
T PF12852_consen 55 EPIRLEAGDIVLLPRGTAHVLSSDPD 80 (186)
T ss_pred CeEEecCCCEEEEcCCCCeEeCCCCC
Confidence 34799999999999999999976543
No 69
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=46.30 E-value=47 Score=32.32 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=21.6
Q ss_pred eEEEEcCCCeEeeCCCceeeeeecC
Q 016948 276 FECTVNAGEILYLPSMWFHHVRQSP 300 (380)
Q Consensus 276 ~~~~L~pGD~LfiP~gWwH~V~~l~ 300 (380)
-...+++||.|..|.+-||.--|.+
T Consensus 131 er~~M~~GDfilTP~w~wHdHgn~g 155 (351)
T COG3435 131 ERTPMEAGDFILTPAWTWHDHGNEG 155 (351)
T ss_pred ceeeccCCCEEEccCceeccCCCCC
Confidence 3467899999999999999988875
No 70
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=45.92 E-value=18 Score=31.02 Aligned_cols=45 Identities=24% Similarity=0.278 Sum_probs=32.1
Q ss_pred CCCCeEEEEcCCCeEeeCCCceeeeeecCCCCCeEEEEEeeecCCCC
Q 016948 272 GPKPFECTVNAGEILYLPSMWFHHVRQSPDDNGYTIALNYWYDMQFD 318 (380)
Q Consensus 272 ~~~~~~~~L~pGD~LfiP~gWwH~V~~l~d~~~~sIsvn~w~~~~~~ 318 (380)
++...++.+..||+|.||+|-=|.-... +.++.|---|==..++|
T Consensus 81 G~~G~el~v~~GDvlliPAGvGH~rl~s--S~DF~VvGaYp~G~q~d 125 (163)
T COG4297 81 GADGQELEVGEGDVLLIPAGVGHCRLHS--SADFQVVGAYPPGQQAD 125 (163)
T ss_pred CCCCceeeecCCCEEEEecCcccccccC--CCCeEEEcccCCccccc
Confidence 4677889999999999999999986554 24566655554333344
No 71
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=45.49 E-value=64 Score=28.46 Aligned_cols=32 Identities=22% Similarity=0.380 Sum_probs=21.9
Q ss_pred CCCeEEEEcCCCeEeeCCCceeeeeecCCCCCeEEEEEeeec
Q 016948 273 PKPFECTVNAGEILYLPSMWFHHVRQSPDDNGYTIALNYWYD 314 (380)
Q Consensus 273 ~~~~~~~L~pGD~LfiP~gWwH~V~~l~d~~~~sIsvn~w~~ 314 (380)
+.+-++.|.|||+ |+|.|.. .+.++|+...-.
T Consensus 126 ~apgeV~lSpgdi--------hsv~n~~--sdrs~aiHvy~a 157 (191)
T COG5553 126 AAPGEVHLSPGDI--------HSVANTG--SDRSGAIHVYLA 157 (191)
T ss_pred cCcceEeeCCCCe--------eeecccC--CCccceEEEEec
Confidence 4456677888776 8998764 356788876543
No 72
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=43.26 E-value=30 Score=30.27 Aligned_cols=38 Identities=24% Similarity=0.387 Sum_probs=31.7
Q ss_pred CeEEEEcCCCeEeeCCC---ceeeeeecCCCCCeEEEEEeeec
Q 016948 275 PFECTVNAGEILYLPSM---WFHHVRQSPDDNGYTIALNYWYD 314 (380)
Q Consensus 275 ~~~~~L~pGD~LfiP~g---WwH~V~~l~d~~~~sIsvn~w~~ 314 (380)
...+.-.+|++|+.|.+ .+|.|.-+. .+.-.+++.|++
T Consensus 138 ~~~v~P~~G~~v~f~~~~~~~~H~v~pv~--~G~r~~~~~W~~ 178 (178)
T smart00702 138 CATVKPKKGDLLFFPSGRGRSLHGVCPVT--RGSRWAITGWIR 178 (178)
T ss_pred ceEEeCCCCcEEEEeCCCCCccccCCcce--eCCEEEEEEEEC
Confidence 45778889999999985 899999875 367889999974
No 73
>PRK11171 hypothetical protein; Provisional
Probab=43.25 E-value=42 Score=31.95 Aligned_cols=27 Identities=11% Similarity=0.127 Sum_probs=24.1
Q ss_pred CCeEEEEcCCCeEeeCCCceeeeeecC
Q 016948 274 KPFECTVNAGEILYLPSMWFHHVRQSP 300 (380)
Q Consensus 274 ~~~~~~L~pGD~LfiP~gWwH~V~~l~ 300 (380)
..-...|++||+|++|++=-|...|..
T Consensus 221 ~~~~~~l~~GD~i~~~~~~~h~~~N~g 247 (266)
T PRK11171 221 NNDWVEVEAGDFIWMRAYCPQACYAGG 247 (266)
T ss_pred CCEEEEeCCCCEEEECCCCCEEEECCC
Confidence 356778999999999999999999975
No 74
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=41.41 E-value=77 Score=28.75 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=24.2
Q ss_pred CCCeEEEEcCCCeEeeCCCceeeeeecC
Q 016948 273 PKPFECTVNAGEILYLPSMWFHHVRQSP 300 (380)
Q Consensus 273 ~~~~~~~L~pGD~LfiP~gWwH~V~~l~ 300 (380)
...-...|+||+-+-+|+|-||..-.-+
T Consensus 150 ~ag~~lkL~PGesitL~Pg~~HsFwae~ 177 (225)
T COG3822 150 TAGSQLKLSPGESITLPPGLYHSFWAEE 177 (225)
T ss_pred ccceeEEECCCCcEecCCCceeeeeecC
Confidence 3457889999999999999999988764
No 75
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=41.15 E-value=30 Score=32.62 Aligned_cols=34 Identities=18% Similarity=0.178 Sum_probs=25.0
Q ss_pred eEEEEcCCCeEeeCCCceeeeeecCCCCCeEEEE
Q 016948 276 FECTVNAGEILYLPSMWFHHVRQSPDDNGYTIAL 309 (380)
Q Consensus 276 ~~~~L~pGD~LfiP~gWwH~V~~l~d~~~~sIsv 309 (380)
-...+++||+++||++-.|.+...++.....|.+
T Consensus 62 ~~~~l~~g~~~ii~~~~~H~~~~~~~~~~~~i~i 95 (287)
T TIGR02297 62 HEYSEYAPCFFLTPPSVPHGFVTDLDADGHVLTV 95 (287)
T ss_pred EEEEecCCeEEEeCCCCccccccCCCcceEEEEe
Confidence 3568999999999999999988654323334443
No 76
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=40.47 E-value=45 Score=31.35 Aligned_cols=24 Identities=13% Similarity=0.251 Sum_probs=20.5
Q ss_pred eEEEEcCCCeEeeCCCceeeeeec
Q 016948 276 FECTVNAGEILYLPSMWFHHVRQS 299 (380)
Q Consensus 276 ~~~~L~pGD~LfiP~gWwH~V~~l 299 (380)
-...+.|||+++||+|=.|+....
T Consensus 61 ~~~~l~~g~l~~i~p~~~H~~~~~ 84 (278)
T PRK10296 61 KRVLLERGDFVFIPLGSHHQSFYE 84 (278)
T ss_pred EEEEECCCcEEEeCCCCccceeee
Confidence 456999999999999999987644
No 77
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=39.00 E-value=1.5e+02 Score=29.34 Aligned_cols=24 Identities=13% Similarity=0.124 Sum_probs=18.9
Q ss_pred eEEEEcCCCeEeeCCCceeeeeec
Q 016948 276 FECTVNAGEILYLPSMWFHHVRQS 299 (380)
Q Consensus 276 ~~~~L~pGD~LfiP~gWwH~V~~l 299 (380)
.++..++||++.||+.-+|+-.+.
T Consensus 288 ~~~~W~~gD~f~vPsW~~~~h~a~ 311 (335)
T TIGR02272 288 AVFRFSPKDVFVVPSWHPVRFEAS 311 (335)
T ss_pred EEEEecCCCEEEECCCCcEecccC
Confidence 467899999999999767765553
No 78
>PRK13501 transcriptional activator RhaR; Provisional
Probab=35.65 E-value=39 Score=32.06 Aligned_cols=26 Identities=12% Similarity=0.325 Sum_probs=22.5
Q ss_pred CeEEEEcCCCeEeeCCCceeeeeecC
Q 016948 275 PFECTVNAGEILYLPSMWFHHVRQSP 300 (380)
Q Consensus 275 ~~~~~L~pGD~LfiP~gWwH~V~~l~ 300 (380)
.....+++||+++||++=.|++...+
T Consensus 55 ~~~~~l~~g~~~~I~p~~~H~~~~~~ 80 (290)
T PRK13501 55 DHPYRITCGDVFYIQAADHHSYESVH 80 (290)
T ss_pred CeeeeecCCeEEEEcCCCcccccccC
Confidence 46679999999999999999988753
No 79
>PF01238 PMI_typeI: Phosphomannose isomerase type I; InterPro: IPR001250 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. Type I includes eukaryotic PMI and the enzyme encoded by the manA gene in enterobacteria. PMI has a bound zinc ion, which is essential for activity. A crystal structure of PMI from Candida albicans shows that the enzyme has three distinct domains []. The active site lies in the central domain, contains a single essential zinc atom, and forms a deep, open cavity of suitable dimensions to contain M6P or F6P The central domain is flanked by a helical domain on one side and a jelly-roll like domain on the other.; GO: 0004476 mannose-6-phosphate isomerase activity, 0008270 zinc ion binding, 0005975 carbohydrate metabolic process; PDB: 1PMI_A 1QWR_B 1ZX5_A 3H1Y_A 2WFP_A 3H1M_A 3H1W_A.
Probab=34.73 E-value=25 Score=35.19 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=18.9
Q ss_pred EEEEcCCCeEeeCCCceeeeeec
Q 016948 277 ECTVNAGEILYLPSMWFHHVRQS 299 (380)
Q Consensus 277 ~~~L~pGD~LfiP~gWwH~V~~l 299 (380)
.+.|+|||++|+|+|=.|...+-
T Consensus 251 ~v~L~pGeaifl~a~~~HAYl~G 273 (373)
T PF01238_consen 251 YVELQPGEAIFLPAGEPHAYLSG 273 (373)
T ss_dssp EEEE-TT-EEEEHTTHHEEEEEE
T ss_pred EEEecCCceEEecCCCccccccc
Confidence 56999999999999999999873
No 80
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=34.30 E-value=86 Score=28.88 Aligned_cols=31 Identities=13% Similarity=0.375 Sum_probs=26.7
Q ss_pred ceEEEecCCCCcccccccCCCceEEEEeeeE
Q 016948 170 AVNLWIGNQLSETSFHKDHYENLYTVVSGQK 200 (380)
Q Consensus 170 ~~~lwiG~~gs~t~lH~D~~~n~~~qv~G~K 200 (380)
..-+++|.++..+..|..+.+-|+.|..|.-
T Consensus 34 lkVm~VGGPN~RkdyHieegeE~FyQ~KGdM 64 (279)
T KOG3995|consen 34 LKVMFVGGPNTRKDYHIEEGEEVFYQLKGDM 64 (279)
T ss_pred eEEEEecCCCcccccccCCcchhheeecCce
Confidence 4557899999999999999888999988864
No 81
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=34.11 E-value=1.9e+02 Score=25.88 Aligned_cols=40 Identities=13% Similarity=0.287 Sum_probs=29.2
Q ss_pred CCeEEEEcCCCeEeeCCCceeeeeecCCCCCeEEEEEeeecC
Q 016948 274 KPFECTVNAGEILYLPSMWFHHVRQSPDDNGYTIALNYWYDM 315 (380)
Q Consensus 274 ~~~~~~L~pGD~LfiP~gWwH~V~~l~d~~~~sIsvn~w~~~ 315 (380)
+-+.+.+.+||.|-||+|-+|...-..+ .--.+|-+.-.+
T Consensus 116 ~~~~i~c~~gDLI~vP~gi~HwFtlt~~--~~f~AvRlF~~~ 155 (181)
T COG1791 116 KVYQIRCEKGDLISVPPGIYHWFTLTES--PNFKAVRLFTEP 155 (181)
T ss_pred cEEEEEEccCCEEecCCCceEEEEccCC--CcEEEEEEeeCC
Confidence 4577888999999999999999875542 334566665444
No 82
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=34.02 E-value=22 Score=33.25 Aligned_cols=15 Identities=20% Similarity=0.570 Sum_probs=13.5
Q ss_pred EEcCCCeEeeCCCce
Q 016948 279 TVNAGEILYLPSMWF 293 (380)
Q Consensus 279 ~L~pGD~LfiP~gWw 293 (380)
.|+|||++|||..|+
T Consensus 225 ~l~~gDii~V~~s~~ 239 (239)
T TIGR03028 225 LVQPDDVIYVRESLF 239 (239)
T ss_pred ccCCCCEEEEeCccC
Confidence 499999999999885
No 83
>PRK13502 transcriptional activator RhaR; Provisional
Probab=34.01 E-value=44 Score=31.46 Aligned_cols=25 Identities=12% Similarity=0.212 Sum_probs=21.5
Q ss_pred eEEEEcCCCeEeeCCCceeeeeecC
Q 016948 276 FECTVNAGEILYLPSMWFHHVRQSP 300 (380)
Q Consensus 276 ~~~~L~pGD~LfiP~gWwH~V~~l~ 300 (380)
-+..++|||+++||++=.|.....+
T Consensus 56 ~~~~l~~g~l~li~~~~~H~~~~~~ 80 (282)
T PRK13502 56 RPYRITRGDLFYIRAEDKHSYTSVN 80 (282)
T ss_pred EEEeecCCcEEEECCCCcccccccC
Confidence 4578999999999999999987643
No 84
>COG3615 TehB Uncharacterized protein/domain, possibly involved in tellurite resistance [Inorganic ion transport and metabolism]
Probab=30.46 E-value=81 Score=25.31 Aligned_cols=36 Identities=17% Similarity=0.361 Sum_probs=24.9
Q ss_pred eEEEEcCCCeEeeCCCceeeeeecCCCCCeEEEEEeeec
Q 016948 276 FECTVNAGEILYLPSMWFHHVRQSPDDNGYTIALNYWYD 314 (380)
Q Consensus 276 ~~~~L~pGD~LfiP~gWwH~V~~l~d~~~~sIsvn~w~~ 314 (380)
..++.+. +.=++|+--||.|+...| +.-+.+.||..
T Consensus 62 ~~~~~ea-~~~~~~PQ~WHrVea~tD--D~e~~l~Fyc~ 97 (99)
T COG3615 62 HVFSIEA-QFPVFPPQAWHRVEAMTD--DAEFNLSFYCA 97 (99)
T ss_pred EEEeecC-CCCccChhHeeeeeeccc--ccEEEEEEEEc
Confidence 4445555 445677788999999875 56666677754
No 85
>PRK13500 transcriptional activator RhaR; Provisional
Probab=29.57 E-value=66 Score=31.06 Aligned_cols=26 Identities=12% Similarity=0.175 Sum_probs=22.6
Q ss_pred CeEEEEcCCCeEeeCCCceeeeeecC
Q 016948 275 PFECTVNAGEILYLPSMWFHHVRQSP 300 (380)
Q Consensus 275 ~~~~~L~pGD~LfiP~gWwH~V~~l~ 300 (380)
.....+.+||++|||++=.|...+.+
T Consensus 85 ~~~~~l~~Gdl~~I~~~~~H~~~~~~ 110 (312)
T PRK13500 85 DRPYRITRGDLFYIHADDKHSYASVN 110 (312)
T ss_pred CEEEeecCCeEEEECCCCeecccccC
Confidence 46679999999999999999988754
No 86
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=29.21 E-value=81 Score=27.55 Aligned_cols=37 Identities=16% Similarity=0.358 Sum_probs=26.4
Q ss_pred eEEEEcCCCeEeeCCCceeeeeecCCCCCeEEEEEee
Q 016948 276 FECTVNAGEILYLPSMWFHHVRQSPDDNGYTIALNYW 312 (380)
Q Consensus 276 ~~~~L~pGD~LfiP~gWwH~V~~l~d~~~~sIsvn~w 312 (380)
-....++|+++++=..+.|.|.|-++..-+.+-|.||
T Consensus 124 ~~~~w~~G~~~~fD~s~~H~~~N~~~~~Rv~L~vD~~ 160 (163)
T PF05118_consen 124 ETRHWREGECWVFDDSFEHEVWNNGDEDRVVLIVDFW 160 (163)
T ss_dssp EEEB--CTEEEEE-TTS-EEEEESSSS-EEEEEEEEE
T ss_pred eEEEeccCcEEEEeCCEEEEEEeCCCCCEEEEEEEee
Confidence 3456789999999999999999987656677777777
No 87
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=28.95 E-value=36 Score=33.29 Aligned_cols=22 Identities=36% Similarity=0.676 Sum_probs=16.6
Q ss_pred HHHHHHHhhcCCCcEEEECCCCC
Q 016948 31 PLQFLRDYVSQNKPCIIKNVSLH 53 (380)
Q Consensus 31 ~~~F~~~yv~~~~PvVi~g~~~~ 53 (380)
+++|+++|+. ++|++|++....
T Consensus 1 pe~F~~~yw~-kkPl~i~~~~~~ 22 (319)
T PF08007_consen 1 PETFLREYWE-KKPLLIRRADPY 22 (319)
T ss_dssp HHHHHHHTTT-TS-EEE--SGCC
T ss_pred ChhHHHHHhc-cCCEEECCCCcc
Confidence 5899999988 899999998775
No 88
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=25.98 E-value=1.1e+02 Score=28.82 Aligned_cols=26 Identities=27% Similarity=0.506 Sum_probs=22.2
Q ss_pred eEEEEcCCCeEeeCCCceeeeeecCC
Q 016948 276 FECTVNAGEILYLPSMWFHHVRQSPD 301 (380)
Q Consensus 276 ~~~~L~pGD~LfiP~gWwH~V~~l~d 301 (380)
-+..++|||+++||++--|++...++
T Consensus 67 ~~~~~~~g~~i~i~p~~~h~~~~~~~ 92 (290)
T PRK10572 67 RAFVCRPGDLLLFPPGEIHHYGRHPD 92 (290)
T ss_pred eeEecCCCCEEEECCCCceeeccCCC
Confidence 46799999999999999999876554
No 89
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=24.24 E-value=66 Score=29.60 Aligned_cols=31 Identities=13% Similarity=0.137 Sum_probs=24.8
Q ss_pred EEcCCCeEeeCCCceeeeeecCCCCCeEEEE
Q 016948 279 TVNAGEILYLPSMWFHHVRQSPDDNGYTIAL 309 (380)
Q Consensus 279 ~L~pGD~LfiP~gWwH~V~~l~d~~~~sIsv 309 (380)
+..+||.|.+|.+--|+..+..+.+.++++|
T Consensus 164 ~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~v 194 (215)
T TIGR02451 164 VYGVGDFEEADGSVQHQPRTVSGGDCLCLAV 194 (215)
T ss_pred ccCCCeEEECCCCCCcCcccCCCCCeEEEEE
Confidence 5789999999999999999986433455554
No 90
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=22.82 E-value=1.1e+02 Score=27.78 Aligned_cols=40 Identities=23% Similarity=0.428 Sum_probs=33.7
Q ss_pred CeEEEEcCCCeEeeCCCceeeeeecCCCCCeEEEEEeeecCC
Q 016948 275 PFECTVNAGEILYLPSMWFHHVRQSPDDNGYTIALNYWYDMQ 316 (380)
Q Consensus 275 ~~~~~L~pGD~LfiP~gWwH~V~~l~d~~~~sIsvn~w~~~~ 316 (380)
-.+|.|-+||++..|+---|+|..+.. +.-++.=||+..-
T Consensus 143 ~h~VklPAGdLVlypStSlH~VtPVTR--g~R~asffW~qsl 182 (229)
T COG3128 143 NHRVKLPAGDLVLYPSTSLHEVTPVTR--GERFASFFWIQSL 182 (229)
T ss_pred ceEEeccCCCEEEcccccceecccccc--CceEEEeeehHHH
Confidence 478999999999999999999998863 6778877887643
No 91
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=22.44 E-value=71 Score=27.72 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=21.8
Q ss_pred CCCeEEEEcCCCeEeeCCCceeeeee
Q 016948 273 PKPFECTVNAGEILYLPSMWFHHVRQ 298 (380)
Q Consensus 273 ~~~~~~~L~pGD~LfiP~gWwH~V~~ 298 (380)
.....+.++|||+|+.-..-||....
T Consensus 177 ~~~~~~~~~~Gdvl~~~~~~~H~s~~ 202 (211)
T PF05721_consen 177 DEWVPVPMKAGDVLFFHSRLIHGSGP 202 (211)
T ss_dssp SGCEEE-BSTTEEEEEETTSEEEEE-
T ss_pred CceEEeecCCCeEEEEcCCccccCCC
Confidence 46788999999999999999999875
No 92
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=21.67 E-value=1.3e+02 Score=23.58 Aligned_cols=26 Identities=12% Similarity=0.195 Sum_probs=19.3
Q ss_pred eEEEEcCCCeEeeCCCceeeeeecCC
Q 016948 276 FECTVNAGEILYLPSMWFHHVRQSPD 301 (380)
Q Consensus 276 ~~~~L~pGD~LfiP~gWwH~V~~l~d 301 (380)
-..++.+|++.+||+|=.-..+|+.+
T Consensus 51 ~~f~v~~G~~F~VP~gN~Y~i~N~~~ 76 (85)
T PF11699_consen 51 TSFVVTKGGSFQVPRGNYYSIKNIGN 76 (85)
T ss_dssp EEEEEETT-EEEE-TT-EEEEEE-SS
T ss_pred cEEEEeCCCEEEECCCCEEEEEECCC
Confidence 56789999999999999999999863
Done!