BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016952
(380 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LHO|A Chain A, Crystal Structure Of Putative Hydrolase (Yp_751971.1) From
Shewanella Frigidimarina Ncimb 400 At 1.80 A Resolution
Length = 267
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/274 (33%), Positives = 134/274 (48%), Gaps = 40/274 (14%)
Query: 112 YLNRNPTAKAVLELVQSSGNNQICYDHIAFRTFGLKRL---ALLEGLVDVYLLSICDVTF 168
Y+ P+A + +L+ I DHIA RTF + ++ L + + + D F
Sbjct: 17 YIKXTPSAAKIHQLLGHGA--PIINDHIALRTFNIAKVNLSVLAKHFTSIGYVDSGDYKF 74
Query: 169 S--------FHYPDGGSGVNGPLPRVFISELLVDQMSPQIQEIIRKYTETSGSGKKHAAL 220
F +PD P+VFISELLV++ SP++Q+ I + + A
Sbjct: 75 EQKKLIAKHFEHPDPKQ------PKVFISELLVEEFSPEVQKSIHGLID-----QVDIAA 123
Query: 221 ASALGSLTWGKPL---YSEFQQLARESEYAAWTLVNGYAVNHVTISIHHLKSQLNNIKSL 277
+A + G+ + +Q L ESEYAAW GY NH T+SI+ L + I+ +
Sbjct: 124 TTADNFIYSGRHWDVDKATYQALLAESEYAAWVAALGYRANHFTVSINDL-PEFERIEDV 182
Query: 278 NQFIEDNGFRLNSEGGVLKVSPDGLLLQSSTVADSFPFCFSDGVTESVPCSYIEFAERLV 337
NQ ++ GF LNS GG +K SP+ LL QSST AD F+DG E +P + EFA R
Sbjct: 183 NQALKQAGFVLNSSGGEVKGSPEVLLEQSSTXADKVVVNFTDGDVE-IPSCFYEFARR-- 239
Query: 338 LPQYKNLPEAEVKEFHRRDGFEVGNADKIFESTS 371
P A + + GF +ADKIFEST+
Sbjct: 240 ------YPXANGQLY---TGFVAASADKIFESTN 264
>pdb|3IUZ|A Chain A, Crystal Structure Of Putative Glyoxalase Superfamily
Protein (Yp_299723.1) From Ralstonia Eutropha Jmp134 At
1.90 A Resolution
Length = 340
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 115/311 (36%), Gaps = 76/311 (24%)
Query: 110 AVYLNRNPTAKAVLELVQSSGNNQICYDHIAFRTFGLK-RLALLEG-------------- 154
A L+R PT +A + V ++G + +DH A RT + AL EG
Sbjct: 55 AGILDRVPTGRAYTDDVAATGG-XVVFDHGALRTVXWRDNGALPEGEAAFTRILRPLGYR 113
Query: 155 LVDVYLLS-ICDVTFSFHYPDGGSGVNGPLPRVFISELLVDQMSPQIQEIIRKYTETSGS 213
L Y L I S+ + D G+ + F+SE ++ S +E + + T
Sbjct: 114 LNGNYPLDRISXTGRSYAHADAPEGI----AQFFVSEFHPERFSDAFREAVGRVT----- 164
Query: 214 GKKHAALASALGSLTW----------------------------GKPLYSEFQQLARESE 245
G L +L W G P ++++ L RES
Sbjct: 165 GNSADPLTPRAQTLLWQLDRDGVLTVADGAELIGLLVPCFERQHGVPRLADYETLLRESA 224
Query: 246 YAAWTLVNGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSEGGVLKVSPDGLLLQ 305
AW G A NH T + + +L + D ++VS G + Q
Sbjct: 225 EXAWIATEGNAFNHATDRVDDVFGLSEQQXALGRPXXDX----------VEVSGSGRVXQ 274
Query: 306 SSTVADSFPFCF----SDGVTESVPCSYIEFAERLVLPQYKNLPEAEVKEFHRRD-GFEV 360
++ AD+ F + V VP S+ EF R ++ + P A R D GF+
Sbjct: 275 TAFRADTVRRQFIGAQGETVERDVPGSFYEFITR---DRFADAPAAS----PRVDLGFDA 327
Query: 361 GNADKIFESTS 371
GNA IF T+
Sbjct: 328 GNAQGIFXXTA 338
>pdb|2X8X|X Chain X, Structure Of The N-Terminal Domain Of Omp85 From The
Thermophilic Cyanobacterium Thermosynechococcus
Elongatus
Length = 235
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 32/174 (18%), Positives = 73/174 (41%), Gaps = 41/174 (23%)
Query: 184 PRVFISELLVDQMSPQIQEIIRKYTETS-GSGKKHAALASALGSLTWGKPLYSEFQQLAR 242
P+V I+E++V+ +P++++++ + T GS L ++ + +++ + R
Sbjct: 3 PKVLIAEVVVEGATPELEQLVYQVISTRPGSTTTRTQLQQDTNAI-FATGFFADVNAVPR 61
Query: 243 ES-------------------EYAAWTLVNGYAVNHV-------TISIHHLKSQLNNIKS 276
++ + A ++ VN + T+++ L++ I+
Sbjct: 62 DTPLGVRITFVVRPYPVLRAVQVAGNQVLTQEKVNEIFAPQIGRTLNLRELQA---GIEK 118
Query: 277 LNQFIEDNGFRLNSEGGVLKVSPDGLLLQSSTVADSFPFCFSDGVTESVPCSYI 330
+N F DNG+ L G +V PDG++ ++GV E V ++
Sbjct: 119 INTFYRDNGYILGQVVGTPQVDPDGVVT----------LQVAEGVVEQVTYRFL 162
>pdb|1M6V|B Chain B, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|D Chain D, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|F Chain F, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|H Chain H, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
Length = 382
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 21/91 (23%)
Query: 247 AAWTLVNGY--AVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLN------SEGGVLKVS 298
+WTL G A + H + +++ + + D G RL S VLK++
Sbjct: 173 GSWTLTGGLPQAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMN 232
Query: 299 PDGLLLQSSTVADSFPFCFSDGVTESVPCSY 329
PDG+ L S+G + PC Y
Sbjct: 233 PDGIFL-------------SNGPGDPAPCDY 250
>pdb|1A9X|B Chain B, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|D Chain D, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|F Chain F, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|H Chain H, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
Length = 379
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 21/91 (23%)
Query: 247 AAWTLVNGY--AVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLN------SEGGVLKVS 298
+WTL G A + H + +++ + + D G RL S VLK++
Sbjct: 172 GSWTLTGGLPQAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMN 231
Query: 299 PDGLLLQSSTVADSFPFCFSDGVTESVPCSY 329
PDG+ L S+G + PC Y
Sbjct: 232 PDGIFL-------------SNGPGDPAPCDY 249
>pdb|1JDB|C Chain C, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|F Chain F, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|I Chain I, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|L Chain L, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1BXR|B Chain B, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|D Chain D, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|F Chain F, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|H Chain H, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1CE8|B Chain B, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|D Chain D, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|F Chain F, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|H Chain H, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
Length = 382
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 21/91 (23%)
Query: 247 AAWTLVNGY--AVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLN------SEGGVLKVS 298
+WTL G A + H + +++ + + D G RL S VLK++
Sbjct: 173 GSWTLTGGLPQAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMN 232
Query: 299 PDGLLLQSSTVADSFPFCFSDGVTESVPCSY 329
PDG+ L S+G + PC Y
Sbjct: 233 PDGIFL-------------SNGPGDPAPCDY 250
>pdb|1CS0|B Chain B, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|D Chain D, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|F Chain F, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|H Chain H, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1KEE|B Chain B, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|D Chain D, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|F Chain F, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|H Chain H, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
Length = 382
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 21/91 (23%)
Query: 247 AAWTLVNGY--AVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLN------SEGGVLKVS 298
+WTL G A + H + +++ + + D G RL S VLK++
Sbjct: 173 GSWTLTGGLPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMN 232
Query: 299 PDGLLLQSSTVADSFPFCFSDGVTESVPCSY 329
PDG+ L S+G + PC Y
Sbjct: 233 PDGIFL-------------SNGPGDPAPCDY 250
>pdb|1C30|B Chain B, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|D Chain D, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|F Chain F, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|H Chain H, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C3O|B Chain B, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|D Chain D, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|F Chain F, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|H Chain H, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
Length = 382
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 21/91 (23%)
Query: 247 AAWTLVNGY--AVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLN------SEGGVLKVS 298
+WTL G A + H + +++ + + D G RL S VLK++
Sbjct: 173 GSWTLTGGLPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMN 232
Query: 299 PDGLLLQSSTVADSFPFCFSDGVTESVPCSY 329
PDG+ L S+G + PC Y
Sbjct: 233 PDGIFL-------------SNGPGDPAPCDY 250
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,803,546
Number of Sequences: 62578
Number of extensions: 391346
Number of successful extensions: 920
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 911
Number of HSP's gapped (non-prelim): 11
length of query: 380
length of database: 14,973,337
effective HSP length: 101
effective length of query: 279
effective length of database: 8,652,959
effective search space: 2414175561
effective search space used: 2414175561
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)