Query 016952
Match_columns 380
No_of_seqs 125 out of 239
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 04:18:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016952.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016952hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07063 DUF1338: Domain of un 100.0 7.3E-84 1.6E-88 629.2 20.6 264 102-371 2-302 (302)
2 COG5383 Uncharacterized protei 98.7 6.5E-09 1.4E-13 100.9 2.9 70 99-168 8-95 (295)
3 cd07250 HPPD_C_like C-terminal 97.5 0.0005 1.1E-08 63.2 8.3 92 244-370 70-189 (191)
4 TIGR01263 4HPPD 4-hydroxypheny 97.2 0.0014 3E-08 65.4 9.2 100 244-378 225-351 (353)
5 PLN02875 4-hydroxyphenylpyruva 94.7 0.16 3.4E-06 52.8 9.2 110 243-373 248-392 (398)
6 COG3185 4-hydroxyphenylpyruvat 94.0 0.16 3.5E-06 51.9 7.3 89 253-377 242-356 (363)
7 KOG0638 4-hydroxyphenylpyruvat 92.6 0.87 1.9E-05 46.4 9.8 206 115-377 98-377 (381)
8 PF13669 Glyoxalase_4: Glyoxal 81.0 0.72 1.6E-05 37.8 1.0 32 253-291 65-96 (109)
9 PLN02367 lactoylglutathione ly 75.8 4.4 9.6E-05 39.4 4.8 40 244-290 155-196 (233)
10 CHL00193 ycf35 Ycf35; Provisio 66.5 5.8 0.00013 35.2 3.1 39 258-300 2-40 (128)
11 cd07249 MMCE Methylmalonyl-CoA 62.0 19 0.00042 28.8 5.1 33 252-291 68-100 (128)
12 cd08353 Glo_EDI_BRP_like_7 Thi 50.3 20 0.00044 29.9 3.6 31 254-291 85-115 (142)
13 cd07257 THT_oxygenase_C The C- 46.0 18 0.00039 31.5 2.7 30 254-290 65-97 (153)
14 COG5383 Uncharacterized protei 45.7 5.1 0.00011 40.0 -0.9 186 88-290 21-285 (295)
15 TIGR03081 metmalonyl_epim meth 44.3 29 0.00063 27.9 3.5 31 254-291 70-100 (128)
16 PRK10291 glyoxalase I; Provisi 43.8 21 0.00046 29.5 2.6 31 254-291 63-93 (129)
17 cd08342 HPPD_N_like N-terminal 42.0 26 0.00057 29.5 3.0 32 253-291 66-97 (136)
18 PRK11478 putative lyase; Provi 41.7 23 0.00049 28.8 2.5 28 255-289 74-101 (129)
19 PLN03042 Lactoylglutathione ly 41.4 19 0.00042 33.4 2.2 37 248-291 19-56 (185)
20 cd08352 Glo_EDI_BRP_like_1 Thi 38.5 29 0.00063 27.4 2.6 30 254-290 70-99 (125)
21 TIGR01263 4HPPD 4-hydroxypheny 35.6 35 0.00076 34.2 3.2 40 244-290 60-99 (353)
22 PF11615 DUF3249: Protein of u 35.6 6.4 0.00014 30.1 -1.5 23 333-359 29-51 (60)
23 cd07245 Glo_EDI_BRP_like_9 Thi 34.1 40 0.00087 25.8 2.7 31 254-291 62-92 (114)
24 cd07233 Glyoxalase_I Glyoxalas 32.7 38 0.00083 26.9 2.4 30 254-290 68-97 (121)
25 cd07258 PpCmtC_C C-terminal do 30.4 33 0.00071 29.8 1.8 33 254-290 54-86 (141)
26 PF02330 MAM33: Mitochondrial 28.4 1.3E+02 0.0027 28.0 5.4 46 193-251 153-198 (204)
27 cd08360 MhqB_like_C C-terminal 26.9 1.5E+02 0.0033 24.7 5.2 28 136-165 4-32 (134)
28 TIGR03645 glyox_marine lactoyl 26.8 58 0.0012 28.8 2.8 28 254-288 91-118 (162)
29 PF08187 Tetradecapep: Myoacti 26.0 33 0.00072 19.6 0.7 10 357-366 1-10 (14)
30 PF10097 DUF2335: Predicted me 25.6 43 0.00092 25.2 1.4 23 355-377 9-31 (50)
31 TIGR00068 glyox_I lactoylgluta 25.2 64 0.0014 27.6 2.7 30 254-290 84-113 (150)
32 PF00903 Glyoxalase: Glyoxalas 25.2 1E+02 0.0023 24.1 3.7 28 257-291 2-30 (128)
33 cd06587 Glo_EDI_BRP_like This 24.9 78 0.0017 23.6 2.9 31 254-291 59-89 (112)
34 cd08364 FosX FosX, a fosfomyci 24.3 47 0.001 27.8 1.7 30 256-290 66-95 (131)
35 PLN03042 Lactoylglutathione ly 23.2 74 0.0016 29.5 2.9 28 256-290 121-148 (185)
36 cd08347 PcpA_C_like C-terminal 22.0 75 0.0016 28.0 2.6 30 256-289 65-94 (157)
37 COG5646 Uncharacterized conser 21.6 1.4E+02 0.0031 26.8 4.1 82 196-300 12-95 (126)
38 PF02109 DAD: DAD family; Int 20.5 1.2E+02 0.0027 26.6 3.5 28 100-127 3-30 (112)
39 PF08073 CHDNT: CHDNT (NUC034) 20.4 1.4E+02 0.0029 23.3 3.3 25 93-117 31-55 (55)
40 cd07242 Glo_EDI_BRP_like_6 Thi 20.3 71 0.0015 25.8 1.9 34 254-291 66-99 (128)
41 PF11080 DUF2622: Protein of u 20.2 84 0.0018 26.9 2.3 32 260-291 9-42 (96)
No 1
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=100.00 E-value=7.3e-84 Score=629.16 Aligned_cols=264 Identities=39% Similarity=0.612 Sum_probs=217.6
Q ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHhcCCCcccccceeeeecCCCccch---hhHHHhcCCeecceeee--------ee
Q 016952 102 RTVLQSMEAVYLNRNPTAKAVLELVQSSGNNQICYDHIAFRTFGLKRLAL---LEGLVDVYLLSICDVTF--------SF 170 (380)
Q Consensus 102 r~~f~~Lw~~Y~~~vP~a~~i~~lv~~~~g~~i~nDHiAfRT~~~~~~Gi---ar~F~~LGY~~~G~Y~F--------~f 170 (380)
++++++||++|+++||+|++|++++.+ .|++++|||||||||+.++.|+ +++|++|||+++|+|+| ||
T Consensus 2 ~~~~~~L~~~Y~~~vP~~~~~~~lv~~-~~~~v~~dH~A~RT~~~~~~gl~~lar~F~~lGy~~~G~Y~f~~kkl~a~~f 80 (302)
T PF07063_consen 2 QAFFDALWEMYLQRVPSAGTLVELVAE-VGETVLNDHGAFRTFGGPPYGLASLARIFAALGYEPVGYYDFPAKKLHATWF 80 (302)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHH-TTCHCHEEEEEEEEECTSHCCHHHHHHHHHTTTEEEEEEEEEGGGTEEEEEE
T ss_pred hHHHHHHHHHHHHHCcCHHHHHHHHHH-cCccceeeeeEEEecCCCchhHHHHHHHHHHcCCEEcceecccccCceEEEe
Confidence 468899999999999999999999986 6788999999999999999999 99999999999999999 99
Q ss_pred cCCCCCCCCCCCCCeEEeeccccCcCCHHHHHHHHHHHhhcCCC----------------c----hHHHHHHHhcCCCCC
Q 016952 171 HYPDGGSGVNGPLPRVFISELLVDQMSPQIQEIIRKYTETSGSG----------------K----KHAALASALGSLTWG 230 (380)
Q Consensus 171 ~pp~~~l~~~g~~PRVFISEL~vd~lS~~~q~iI~~lv~~~~~~----------------~----~~~~l~~~~~~~~W~ 230 (380)
+||++... .||||||||+||+||+++|++|++++.+++.- + ..+++++++++|+|+
T Consensus 81 ~p~d~~~~----~prvFiSeL~~e~ls~~~q~~i~~~l~~r~~~~~~~~~~l~~~~~~~~l~~~~a~~~v~~~~~~~~W~ 156 (302)
T PF07063_consen 81 RPPDPPEL----APRVFISELRVEELSPELQEIIEKYLSRRDPFSPRPLELLDQAERQGGLSAEQADEFVAEALSGFPWQ 156 (302)
T ss_dssp EETSCTCC----C-EEEEEEE-GGGSSHHHHHHHHHHHTTS-GCGHHHHHHHHHHHHHSCEBHHHHHHHHHHHGGGCSS-
T ss_pred cCCCCccc----CCeEEeecccHhhcCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcccCCC
Confidence 99997421 29999999999999999999999999665521 1 124567899999999
Q ss_pred C--CCHHHHHHHHHhhhhhhHhhhcCCCCcccceecccccccCCCHHHHHHHHHHCCCccccCCCeEEeCCCcceEeeee
Q 016952 231 K--PLYSEFQQLARESEYAAWTLVNGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSEGGVLKVSPDGLLLQSST 308 (380)
Q Consensus 231 ~--ps~adYe~L~~ESeyAAWIa~~Gy~~NH~TisVn~L~~r~~DIe~vn~~Lk~~G~~ln~~GG~IkgSP~glLrQSSt 308 (380)
. |+++||++|++||||||||+++||++||||++||+|+ ..+||++||++|+++|++||++||+|||||+++||||||
T Consensus 157 ~~~ps~~~Y~~L~~eSe~aAWi~~~G~~~NH~T~~v~~l~-~~~dI~~v~~~l~~~G~~~n~~g~~Iegsp~~lLrQtS~ 235 (302)
T PF07063_consen 157 HRAPSLADYQTLLAESEYAAWIAAHGYHINHFTPRVNRLK-KFLDIDAVNAFLKERGIPMNDSGGEIEGSPDGLLRQTST 235 (302)
T ss_dssp SB-SBHHHHHHHHHH-HHHHHHHHHTCS-SEEEEETTT-T-T-S-HHHHHHHHHHTT--B--TTSSSEECCCCSEEEEEB
T ss_pred CCCCCHHHHHHHHHHhHHHHhhcccccccceeeceeeccc-ccccHHHHHHHHHHcCCCccccCCceEECCCCCEEEEee
Confidence 8 9999999999999999999999999999999999998 679999999999999999999999999999999999999
Q ss_pred cccceeEEecCC----cEeeeccceEeeeeeccCCCCCCCChhhhhhhccccCcCCCChhHHHHhhh
Q 016952 309 VADSFPFCFSDG----VTESVPCSYIEFAERLVLPQYKNLPEAEVKEFHRRDGFEVGNADKIFESTS 371 (380)
Q Consensus 309 ~Ad~~~v~F~DG----~~~~IPgsfyEFaeR~~lp~~~~~~~~el~~~~~~~GF~a~NAdkIFEST~ 371 (380)
+|++++|+|.|| +++.||||||||+||+|+|++.+++..+..+.++|+||+++|||||||||+
T Consensus 236 ~A~~~~v~F~d~~g~~~~~~ip~~f~Ef~~R~~~~~~~~~~~~~~~~~~~yegF~~~sA~~IFeSt~ 302 (302)
T PF07063_consen 236 MADEEEVTFADGDGSLVEGSIPGSFYEFAQRYPLPEGLILPGDEIAEPILYEGFLPGSADGIFESTL 302 (302)
T ss_dssp EEEEEEEEETTETS-ECEEEEEEEEEEEEEE-CTTCCHHHTTSEEEEESB--SSS------------
T ss_pred ccceeEEEEecCCCceeeeEeeeeEEeehhhccCcccccCccccccCCcccCCCChhhhhhhhccCC
Confidence 999999999998 677899999999999999999888888999999999999999999999995
No 2
>COG5383 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.71 E-value=6.5e-09 Score=100.91 Aligned_cols=70 Identities=19% Similarity=0.221 Sum_probs=61.3
Q ss_pred HHHHHHHHH-HHHHHHHhCCcHHHHHHHHHhcCCCccc----------------ccceeeeecCCCccch-hhHHHhcCC
Q 016952 99 SFFRTVLQS-MEAVYLNRNPTAKAVLELVQSSGNNQIC----------------YDHIAFRTFGLKRLAL-LEGLVDVYL 160 (380)
Q Consensus 99 ~~Lr~~f~~-Lw~~Y~~~vP~a~~i~~lv~~~~g~~i~----------------nDHiAfRT~~~~~~Gi-ar~F~~LGY 160 (380)
..+|.-|.+ |+.||.++||.+++++++|.++|.+.+. .+|+|+|..+..++.. +|+|+.|||
T Consensus 8 d~ir~~fs~ams~my~~evp~ygtl~elva~vn~~~l~~~~~~~~~~~l~r~~~erhgairvgt~~el~~~rr~fa~mgm 87 (295)
T COG5383 8 DEIRAAFSAAMSAMYQEEVPAYGTLLELVADVNSDVLTRHRRLERTDSLERLTEERHGAIRVGTAAELSMLRRLFAVMGM 87 (295)
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhHHHHHHHHHHHhcchHHHhhHHhcCceecCCHHHHHHHHHHHHHhcC
Confidence 468888887 9999999999999999999987655433 7899999877777766 999999999
Q ss_pred eecceeee
Q 016952 161 LSICDVTF 168 (380)
Q Consensus 161 ~~~G~Y~F 168 (380)
.|+||||+
T Consensus 88 ~pv~yydl 95 (295)
T COG5383 88 YPVGYYDL 95 (295)
T ss_pred Ccccceec
Confidence 99999999
No 3
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=97.46 E-value=0.0005 Score=63.17 Aligned_cols=92 Identities=23% Similarity=0.303 Sum_probs=66.1
Q ss_pred hhhhhHhhhc-CCCCcccceecccccccCCCHHHHHHHHHHCCCccccC-----------CC----------------eE
Q 016952 244 SEYAAWTLVN-GYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSE-----------GG----------------VL 295 (380)
Q Consensus 244 SeyAAWIa~~-Gy~~NH~TisVn~L~~r~~DIe~vn~~Lk~~G~~ln~~-----------GG----------------~I 295 (380)
|++..++..+ |..+.|+++ .+.||++..+.|+++|+++-.. -+ .+
T Consensus 70 s~~~~fl~~~~G~Gv~HIAf-------~vdDI~~~~~~L~~~Gv~~l~~P~~yy~~l~~r~~~~~~~~~~~~l~~~~il~ 142 (191)
T cd07250 70 SQIQEFLEYYGGAGVQHIAL-------ATDDIFATVAALRARGVEFLPIPDNYYDDLEARLDGILVDEDLDTLRELGILV 142 (191)
T ss_pred cHHHHHHHHhCCCceeEEEE-------ECCCHHHHHHHHHHcCCeeccCchhhHHHHHHhccccccchhHHHHHHCCEEE
Confidence 4444555554 778999997 6789999999999999866431 01 01
Q ss_pred EeCCCcceEeeeecccceeEEecCCcEeeeccceEeeeeeccCCCCCCCChhhhhhhccccCcCCCChhHHHHhh
Q 016952 296 KVSPDGLLLQSSTVADSFPFCFSDGVTESVPCSYIEFAERLVLPQYKNLPEAEVKEFHRRDGFEVGNADKIFEST 370 (380)
Q Consensus 296 kgSP~glLrQSSt~Ad~~~v~F~DG~~~~IPgsfyEFaeR~~lp~~~~~~~~el~~~~~~~GF~a~NAdkIFEST 370 (380)
-....+.|.|..|+... | -|.=|+|++||. | +.||-+||+..+||+-
T Consensus 143 d~~~~~~llq~ft~~~~------~-----~~~~f~E~iqR~----g-------------~~gfg~~N~~~l~~a~ 189 (191)
T cd07250 143 DRDDGGYLLQIFTKPVF------D-----RPTFFFEIIQRR----G-------------YTGFGAGNFKALFEAI 189 (191)
T ss_pred ECCCCCEEEEEeccCCC------C-----CCCeEEEEEEEc----C-------------CCccccchHHHHHHHh
Confidence 11235778888777432 1 156799999997 3 7999999999999973
No 4
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=97.24 E-value=0.0014 Score=65.41 Aligned_cols=100 Identities=24% Similarity=0.341 Sum_probs=74.5
Q ss_pred hhhhhHhhhc-CCCCcccceecccccccCCCHHHHHHHHHHCCCccccCC-------------------------Ce-EE
Q 016952 244 SEYAAWTLVN-GYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSEG-------------------------GV-LK 296 (380)
Q Consensus 244 SeyAAWIa~~-Gy~~NH~TisVn~L~~r~~DIe~vn~~Lk~~G~~ln~~G-------------------------G~-Ik 296 (380)
|+...++..+ |-.+.|+++ ++.||++..+.|+++|+++...- |+ |-
T Consensus 225 s~i~~fl~~~~g~Gv~HiAf-------~vdDi~~~~~~l~~~Gv~~l~~P~~yY~~l~~r~~~~~~~~~~~l~~~~iL~D 297 (353)
T TIGR01263 225 SQIEEFLEFYNGAGVQHIAL-------NTDDIVRTVRALRARGVEFLDTPDTYYDLLGERLGGHVKEDLDTLRELNILID 297 (353)
T ss_pred CHHHHHHHHcCCCCccEEEE-------EcCCHHHHHHHHHHcCCccCcCCHHHHHHHHHHhcccccchHHHHHHCCEEEe
Confidence 4455556565 788999997 78899999999999999665320 11 22
Q ss_pred eCCCcceEeeeecccceeEEecCCcEeeeccceEeeeeeccCCCCCCCChhhhhhhccccCcCCCChhHHHHhhhhhhhh
Q 016952 297 VSPDGLLLQSSTVADSFPFCFSDGVTESVPCSYIEFAERLVLPQYKNLPEAEVKEFHRRDGFEVGNADKIFESTSKEQLT 376 (380)
Q Consensus 297 gSP~glLrQSSt~Ad~~~v~F~DG~~~~IPgsfyEFaeR~~lp~~~~~~~~el~~~~~~~GF~a~NAdkIFEST~~~~~~ 376 (380)
...+|+|.|..|+..- | -|.=|+|++||. + ++||=+||=..+||+--.+|++
T Consensus 298 ~d~~g~llqift~~~~------~-----~~~~FfEiiqR~----~-------------~~gfG~gN~~alf~a~e~~q~~ 349 (353)
T TIGR01263 298 GDEDGYLLQIFTKPLQ------D-----RGTLFFEIIQRK----G-------------AGGFGEGNFKALFEAIEREQER 349 (353)
T ss_pred cCCCceEEEEeccCCC------C-----CCCeEEEEEEEc----C-------------CCccchhhHHHHHHHHHHHHHH
Confidence 3456788888877321 1 155699999997 2 7999999999999999888877
Q ss_pred hh
Q 016952 377 RR 378 (380)
Q Consensus 377 ~~ 378 (380)
|-
T Consensus 350 r~ 351 (353)
T TIGR01263 350 RG 351 (353)
T ss_pred hc
Confidence 63
No 5
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=94.73 E-value=0.16 Score=52.76 Aligned_cols=110 Identities=22% Similarity=0.345 Sum_probs=73.9
Q ss_pred hhhhhhHhhhc-CCCCcccceecccccccCCCHHHHHHHHHHC----CCccccC-------------C------------
Q 016952 243 ESEYAAWTLVN-GYAVNHVTISIHHLKSQLNNIKSLNQFIEDN----GFRLNSE-------------G------------ 292 (380)
Q Consensus 243 ESeyAAWIa~~-Gy~~NH~TisVn~L~~r~~DIe~vn~~Lk~~----G~~ln~~-------------G------------ 292 (380)
.|+.+-++..+ |-.+.|.++ ++.||.+.-+.|+++ |+++-+- +
T Consensus 248 ~SqI~eFL~~~~G~GIQHIAl-------~tdDI~~av~~Lra~~~~~Gv~fL~~Pp~~YYd~L~~R~~~~l~~e~~~~L~ 320 (398)
T PLN02875 248 KSQIQTYLEHNEGPGLQHLAL-------KSDDIFGTLREMRARSHIGGFEFMPPPPPTYYKNLKKRVGDVLTEEQIKECE 320 (398)
T ss_pred cChHHHHHHhcCCCCeeEEEe-------ecCCHHHHHHHHHhccccCCeecCCCChHHHHHHHHHHhccCCChhhHHHHH
Confidence 58888888888 589999996 788999999999998 8754431 0
Q ss_pred --Ce-EEeCCCcceEeeeecccceeEEecCCcEeeeccceEeeeeecc--CCCCCCCChhhhhhhccccCcCCCChhHHH
Q 016952 293 --GV-LKVSPDGLLLQSSTVADSFPFCFSDGVTESVPCSYIEFAERLV--LPQYKNLPEAEVKEFHRRDGFEVGNADKIF 367 (380)
Q Consensus 293 --G~-IkgSP~glLrQSSt~Ad~~~v~F~DG~~~~IPgsfyEFaeR~~--lp~~~~~~~~el~~~~~~~GF~a~NAdkIF 367 (380)
|+ |-...+|+|.|..|+..- | =|-=|+||+||.- ..+....+.+ ..+-.+||=.||=..+|
T Consensus 321 ~~~ILvD~d~~G~LLQIFTkp~~------~-----rpt~FfEiIQR~g~~~~~~~~~~~~---~~~g~~GFG~GNfkALF 386 (398)
T PLN02875 321 ELGILVDKDDQGVLLQIFTKPVG------D-----RPTLFLEIIQRIGCMEKDEEGKEYE---QAGGCGGFGKGNFSELF 386 (398)
T ss_pred HcCEEEecCCCceEEEEeccccC------C-----CCceEEEEEEecCcccccccccccc---ccccCCCcCcccHHHHH
Confidence 11 222334666666666321 1 1446999999973 1111111112 22336999999999999
Q ss_pred Hhhhhh
Q 016952 368 ESTSKE 373 (380)
Q Consensus 368 EST~~~ 373 (380)
|+--..
T Consensus 387 eaiE~~ 392 (398)
T PLN02875 387 KSIEEY 392 (398)
T ss_pred HHHHHH
Confidence 998766
No 6
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=94.03 E-value=0.16 Score=51.92 Aligned_cols=89 Identities=24% Similarity=0.335 Sum_probs=62.9
Q ss_pred cCCCCcccceecccccccCCCHHHHHHHHHHCCCcccc-----------C--------------CCeEEeCCCc-ceEee
Q 016952 253 NGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNS-----------E--------------GGVLKVSPDG-LLLQS 306 (380)
Q Consensus 253 ~Gy~~NH~TisVn~L~~r~~DIe~vn~~Lk~~G~~ln~-----------~--------------GG~IkgSP~g-lLrQS 306 (380)
+|-.+-|.++ .+.||-+..+.|+++|+++-+ + +=.|-+-+++ .|.|-
T Consensus 242 ~G~GIQHIA~-------~T~dI~~tv~~lr~rG~~fl~ip~tYYd~~~~R~~~~~e~ld~Lr~~~IL~D~~~~~~~lLQi 314 (363)
T COG3185 242 RGEGIQHIAF-------GTDDIYATVAALRERGVKFLPIPETYYDDLDARFPLHGEFLDALRELEILYDGDGGGGELLQI 314 (363)
T ss_pred CCCcceEEEe-------cccHHHHHHHHHHHcCCccCCCchhHHHHHhhcCCCChHHHHHHHhcCeEeecCCCCcEEEEE
Confidence 5888999996 789999999999999996643 1 0011222222 34444
Q ss_pred eecccceeEEecCCcEeeeccceEeeeeeccCCCCCCCChhhhhhhccccCcCCCChhHHHHhhhhhhhhh
Q 016952 307 STVADSFPFCFSDGVTESVPCSYIEFAERLVLPQYKNLPEAEVKEFHRRDGFEVGNADKIFESTSKEQLTR 377 (380)
Q Consensus 307 St~Ad~~~v~F~DG~~~~IPgsfyEFaeR~~lp~~~~~~~~el~~~~~~~GF~a~NAdkIFEST~~~~~~~ 377 (380)
.|+- .+..-|+||+||. - | ++||=+||=...|||-...|.+|
T Consensus 315 ft~~-------------~~g~~FFEiIeRR--~-g-------------~~GfGegNF~Alfe~~eq~q~rR 356 (363)
T COG3185 315 FTRT-------------FIGPFFFEIIERR--K-G-------------YQGFGEGNFKALFESIEQDQIRR 356 (363)
T ss_pred eccc-------------ccCceeEEEEEec--c-c-------------cccccccchhhHHHHHHHHHhhh
Confidence 3321 1456699999995 1 1 79999999999999998888766
No 7
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=92.57 E-value=0.87 Score=46.42 Aligned_cols=206 Identities=19% Similarity=0.208 Sum_probs=112.9
Q ss_pred hCCcHHHHHHHHHhcCCCccc------c-cceeeeecCCCccch--hhHHHhcCCeecceeee--eecCCCCCCCCCCCC
Q 016952 115 RNPTAKAVLELVQSSGNNQIC------Y-DHIAFRTFGLKRLAL--LEGLVDVYLLSICDVTF--SFHYPDGGSGVNGPL 183 (380)
Q Consensus 115 ~vP~a~~i~~lv~~~~g~~i~------n-DHiAfRT~~~~~~Gi--ar~F~~LGY~~~G~Y~F--~f~pp~~~l~~~g~~ 183 (380)
+|-++..+.+...+ +|-.+. + +.++.|.-.+.-+|. -.+++..||+ |. | -|+|+... .+-.++
T Consensus 98 eVeD~da~~~~~va-~Ga~v~~~p~~~~da~G~v~~A~l~tygd~thtlvEr~~y~--g~--FLPGF~~v~~~-~~fp~l 171 (381)
T KOG0638|consen 98 EVEDADAIFQEAVA-NGAKVVRPPWEESDAQGAVTYAVLKTYGDTTHTLVERKGYK--GP--FLPGFEPVSSD-ALFPKL 171 (381)
T ss_pred EecchHHHHHHHHH-cCCcccCCcceeeccCCcEEEEEEecccchhhhhhhhcccc--cc--CCCCcccCccc-cccCCC
Confidence 67788888777764 555544 2 245555555555666 5667777774 33 4 55554321 111247
Q ss_pred CeEEeeccccCcCCHHHHHHHHHHHhhcCCCchHHHHHHHhcCC----CCCCCCHHHHHHHHHhhhhhhH----------
Q 016952 184 PRVFISELLVDQMSPQIQEIIRKYTETSGSGKKHAALASALGSL----TWGKPLYSEFQQLARESEYAAW---------- 249 (380)
Q Consensus 184 PRVFISEL~vd~lS~~~q~iI~~lv~~~~~~~~~~~l~~~~~~~----~W~~ps~adYe~L~~ESeyAAW---------- 249 (380)
||..++-+ .-+|...+++.-..++....++. -|..+ |=+.=.++|.+-+|
T Consensus 172 ~~~~~~~i-------------DH~vgn~p~~em~sa~~wy~~~l~Fhrfwsvd---d~~v~te~SaLrs~vlan~~esi~ 235 (381)
T KOG0638|consen 172 PKGGLNRI-------------DHVVGNQPDGEMESALRWYEKCLGFHRFWSVD---DSQVHTEYSALRSIVLANYEESIK 235 (381)
T ss_pred Cccceeeh-------------hhhhccCCcccchHHHHHHHHhhcccccccCC---cchhhhHHHHHHHHHHhcCCccEE
Confidence 77766543 22333333333333333333322 23211 22233333333333
Q ss_pred -------------------hhhc-CCCCcccceecccccccCCCHHHHHHHHHHCCCcccc-----------C-------
Q 016952 250 -------------------TLVN-GYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNS-----------E------- 291 (380)
Q Consensus 250 -------------------Ia~~-Gy~~NH~TisVn~L~~r~~DIe~vn~~Lk~~G~~ln~-----------~------- 291 (380)
|..+ |-.+-|++. .+.||=..-+.|+.+|...-. +
T Consensus 236 mpinEp~~G~k~ksQIqeyv~y~gG~GvQHiaL-------~tedIi~Ai~~lr~rG~eFLs~Ps~YYqnl~erl~~~~~~ 308 (381)
T KOG0638|consen 236 MPINEPAPGKKKKSQIQEYVEYHGGAGVQHIAL-------NTEDIIEAIRGLRARGGEFLSPPSTYYQNLKERLSTSIRK 308 (381)
T ss_pred EeccCCCCCCccHHHHHHHHHhcCCCceeeeee-------cchHHHHHHHHHHhcCCccccCCHHHHHhHHHHhhhhhhh
Confidence 3344 445777763 467777777778777753221 0
Q ss_pred -----------CCeEEeCCCcceEeeeecccceeEEecCCcEeeeccceEeeeeeccCCCCCCCChhhhhhhccccCcCC
Q 016952 292 -----------GGVLKVSPDGLLLQSSTVADSFPFCFSDGVTESVPCSYIEFAERLVLPQYKNLPEAEVKEFHRRDGFEV 360 (380)
Q Consensus 292 -----------GG~IkgSP~glLrQSSt~Ad~~~v~F~DG~~~~IPgsfyEFaeR~~lp~~~~~~~~el~~~~~~~GF~a 360 (380)
|=.|-.-..|.|.|-.|+..-- -|--|+|++||. + .+||-+
T Consensus 309 vked~~~l~el~ILvD~De~gyLLQIFTKplqd-----------rpTlFlEiIQR~---n--------------~~GFGa 360 (381)
T KOG0638|consen 309 VKEDIKLLEELGILVDFDENGYLLQIFTKPLQD-----------RPTLFLEIIQRQ---N--------------HEGFGA 360 (381)
T ss_pred hhccHHHHHHcCeEEecCCCcEEeeeeccccCC-----------CchHHHHHHHHh---c--------------ccccCc
Confidence 0011112235555555554321 266799999998 2 589999
Q ss_pred CChhHHHHhhhhhhhhh
Q 016952 361 GNADKIFESTSKEQLTR 377 (380)
Q Consensus 361 ~NAdkIFEST~~~~~~~ 377 (380)
||=..+|+|--.+|+.|
T Consensus 361 GNfkaLf~siEeEQ~~r 377 (381)
T KOG0638|consen 361 GNFKALFKSIEEEQTKR 377 (381)
T ss_pred ccHHHHHHHHHHHHHhh
Confidence 99999999988777665
No 8
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=81.04 E-value=0.72 Score=37.81 Aligned_cols=32 Identities=22% Similarity=0.536 Sum_probs=28.8
Q ss_pred cCCCCcccceecccccccCCCHHHHHHHHHHCCCccccC
Q 016952 253 NGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSE 291 (380)
Q Consensus 253 ~Gy~~NH~TisVn~L~~r~~DIe~vn~~Lk~~G~~ln~~ 291 (380)
.|..+||+++ .++||+++.+.|+++|+++..+
T Consensus 65 ~~~gi~Hia~-------~v~D~d~~~~~l~~~G~~~~~~ 96 (109)
T PF13669_consen 65 GGGGIHHIAF-------EVDDLDAAIARLEAQGFRVLDE 96 (109)
T ss_dssp TSSEEEEEEE-------EESHHHHHHHHHHHTTECEEEC
T ss_pred CCCCEEEEEE-------EeCCHHHHHHHHHHCCCEEccc
Confidence 6889999997 6679999999999999998775
No 9
>PLN02367 lactoylglutathione lyase
Probab=75.78 E-value=4.4 Score=39.42 Aligned_cols=40 Identities=13% Similarity=0.296 Sum_probs=30.2
Q ss_pred hhhhhHhhhcC--CCCcccceecccccccCCCHHHHHHHHHHCCCcccc
Q 016952 244 SEYAAWTLVNG--YAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNS 290 (380)
Q Consensus 244 SeyAAWIa~~G--y~~NH~TisVn~L~~r~~DIe~vn~~Lk~~G~~ln~ 290 (380)
++++.+..-+| ..++|+.+ ++.||+++.+.|+++|+++..
T Consensus 155 ~~~~~y~~gn~~p~G~~HIaf-------~VdDVdaa~erL~a~Gv~~v~ 196 (233)
T PLN02367 155 PDFKGYHNGNSEPRGFGHIGI-------TVDDVYKACERFEELGVEFVK 196 (233)
T ss_pred ccchhcccCCCCCCCceEEEE-------EcCCHHHHHHHHHHCCCEEEe
Confidence 34455555443 36899997 678999999999999997754
No 10
>CHL00193 ycf35 Ycf35; Provisional
Probab=66.52 E-value=5.8 Score=35.25 Aligned_cols=39 Identities=23% Similarity=0.381 Sum_probs=32.9
Q ss_pred cccceecccccccCCCHHHHHHHHHHCCCccccCCCeEEeCCC
Q 016952 258 NHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSEGGVLKVSPD 300 (380)
Q Consensus 258 NH~TisVn~L~~r~~DIe~vn~~Lk~~G~~ln~~GG~IkgSP~ 300 (380)
-||| .++..+.|++.+.+.|.+.|++.+..++.|+|--.
T Consensus 2 SHfS----~ikT~i~d~~~L~~AL~dLg~~~~~~~~~vrgy~g 40 (128)
T CHL00193 2 SHFT----KIKTSIQNLNLLKKALNDLNIEWKKENQVIKGYNG 40 (128)
T ss_pred CCcc----cceeEEcCHHHHHHHHHHcCCCceeCCceeeccCC
Confidence 4887 57668999999999999999999987788877554
No 11
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=61.96 E-value=19 Score=28.79 Aligned_cols=33 Identities=21% Similarity=0.437 Sum_probs=27.0
Q ss_pred hcCCCCcccceecccccccCCCHHHHHHHHHHCCCccccC
Q 016952 252 VNGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSE 291 (380)
Q Consensus 252 ~~Gy~~NH~TisVn~L~~r~~DIe~vn~~Lk~~G~~ln~~ 291 (380)
..|..++|+++ ++.|++++.+.|+++|+++...
T Consensus 68 ~~~~g~~h~~f-------~v~d~~~~~~~l~~~G~~~~~~ 100 (128)
T cd07249 68 KRGEGLHHIAF-------EVDDIDAALARLKAQGVRLLQE 100 (128)
T ss_pred cCCCceEEEEE-------EeCCHHHHHHHHHHCCCeeecc
Confidence 45677899997 6678999999999999976554
No 12
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=50.33 E-value=20 Score=29.91 Aligned_cols=31 Identities=16% Similarity=0.289 Sum_probs=25.8
Q ss_pred CCCCcccceecccccccCCCHHHHHHHHHHCCCccccC
Q 016952 254 GYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSE 291 (380)
Q Consensus 254 Gy~~NH~TisVn~L~~r~~DIe~vn~~Lk~~G~~ln~~ 291 (380)
+-.+.|+++ ++.||+++.+.|+++|+++...
T Consensus 85 ~~g~~hia~-------~v~d~d~~~~~l~~~G~~~~~~ 115 (142)
T cd08353 85 ALGLRRVMF-------AVDDIDARVARLRKHGAELVGE 115 (142)
T ss_pred CCCceEEEE-------EeCCHHHHHHHHHHCCCceeCC
Confidence 445779997 7789999999999999987653
No 13
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=45.97 E-value=18 Score=31.52 Aligned_cols=30 Identities=10% Similarity=0.399 Sum_probs=24.5
Q ss_pred CCCCcccceecccccccCCCHHHHH---HHHHHCCCcccc
Q 016952 254 GYAVNHVTISIHHLKSQLNNIKSLN---QFIEDNGFRLNS 290 (380)
Q Consensus 254 Gy~~NH~TisVn~L~~r~~DIe~vn---~~Lk~~G~~ln~ 290 (380)
+..++|+++ ++.||+++. +.|+++|+++..
T Consensus 65 ~~g~~Hiaf-------~v~die~~~~~~~~L~~~Gv~v~~ 97 (153)
T cd07257 65 ESGVHHAAF-------EVHDFDAQGLGHDYLREKGYEHVW 97 (153)
T ss_pred CCceeEEEE-------EcCCHHHHHHHHHHHHHCCCcEee
Confidence 456899997 677888886 999999998753
No 14
>COG5383 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.68 E-value=5.1 Score=40.05 Aligned_cols=186 Identities=9% Similarity=-0.030 Sum_probs=103.4
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHHhCCcHHH---HHHHHHhcCCCc-------------------------------
Q 016952 88 RDPSSSFQGGESFFRTVLQSMEAVYLNRNPTAKA---VLELVQSSGNNQ------------------------------- 133 (380)
Q Consensus 88 ~~~~~~~~~~~~~Lr~~f~~Lw~~Y~~~vP~a~~---i~~lv~~~~g~~------------------------------- 133 (380)
|-.+-+| +|.||-++......+|+.++-.... +..+-.+.-|..
T Consensus 21 my~~evp--~ygtl~elva~vn~~~l~~~~~~~~~~~l~r~~~erhgairvgt~~el~~~rr~fa~mgm~pv~yydl~~a 98 (295)
T COG5383 21 MYQEEVP--AYGTLLELVADVNSDVLTRHRRLERTDSLERLTEERHGAIRVGTAAELSMLRRLFAVMGMYPVGYYDLSTA 98 (295)
T ss_pred HHHhhcc--hhHHHHHHHHHhhHHHHHHHHHHHhcchHHHhhHHhcCceecCCHHHHHHHHHHHHHhcCCcccceecccc
Confidence 4344566 8999999999999999886432222 222222211110
Q ss_pred ------ccccceeeeecCCCccch----------hhHHHhcCCeecceeee------eecCCCCCCCCCCCCCeEEeecc
Q 016952 134 ------ICYDHIAFRTFGLKRLAL----------LEGLVDVYLLSICDVTF------SFHYPDGGSGVNGPLPRVFISEL 191 (380)
Q Consensus 134 ------i~nDHiAfRT~~~~~~Gi----------ar~F~~LGY~~~G~Y~F------~f~pp~~~l~~~g~~PRVFISEL 191 (380)
..+.-+.||..+...++. .|-|+-.|+-++-||++ -|.+-+...- -.++++.|-+-+
T Consensus 99 gvpvhstafe~~sf~~~~~~~h~g~~TArfgeieqRg~ALt~kgr~lYd~Llq~~~t~~~~~~~s~~-a~e~F~qFpd~~ 177 (295)
T COG5383 99 GVPVHSTAFEPVSFADEDGERHPGVHTARFGEIEQRGVALTPKGRVLYDDLLQAASTGFNAMAYSAT-AREIFEQFPDSM 177 (295)
T ss_pred CCcceechhhhhhhhccCCccccccchhhHhHHHHhhhhhcccccchHHHHHhhhccccchhhhHHH-HhhHHhhCCchH
Confidence 115556666666555422 56688889999999988 3333322111 115677776543
Q ss_pred ---ccCcCCHHHHHHHHH----------HHhhcCC--Cch----HHHHHHHhcCCCCC---CCCHHHHHHHHHhhhhhhH
Q 016952 192 ---LVDQMSPQIQEIIRK----------YTETSGS--GKK----HAALASALGSLTWG---KPLYSEFQQLARESEYAAW 249 (380)
Q Consensus 192 ---~vd~lS~~~q~iI~~----------lv~~~~~--~~~----~~~l~~~~~~~~W~---~ps~adYe~L~~ESeyAAW 249 (380)
+-..+ -.+-.. .+...++ ++. .++....+..|.|. .+..+. |..|..--+.
T Consensus 178 ~emrqQ~l----A~f~y~l~~~~~~~rq~le~~dd~Q~LiE~g~v~fepivyEDFlpvSAAgIfqSN---Lg~e~~~~~~ 250 (295)
T COG5383 178 SEMREQGL----AQFRYLLELVAAAHRQSLEEGDDPQGLIERGAVQFEPIVYEDFLPVSAAGIFQSN---LGNEGQQEFD 250 (295)
T ss_pred HHHHHHhH----HHHHHHhhhcchhHHhhcCcccCchhHHHhccccccchhHhhcchhhhhhhhhhh---ccccccceec
Confidence 21111 111111 1111111 111 12334566777774 233333 6666666666
Q ss_pred hhhc-CCCCcccceecccccccCCCHHHHHHHHHHCCCcccc
Q 016952 250 TLVN-GYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNS 290 (380)
Q Consensus 250 Ia~~-Gy~~NH~TisVn~L~~r~~DIe~vn~~Lk~~G~~ln~ 290 (380)
..++ +...||.+ .++.|+.++++.+.++++.-|.
T Consensus 251 ~~~np~~f~~~Lg-------~~VlDe~~lY~~ieq~Sie~c~ 285 (295)
T COG5383 251 GGPNPDRFEDALG-------AAVLDEFQLYAAIEQRSIERCI 285 (295)
T ss_pred cCCCHHHHHhhcC-------CCcCCHHHHHHHHHHhhhhhhh
Confidence 6655 33566766 7999999999999999886554
No 15
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=44.28 E-value=29 Score=27.88 Aligned_cols=31 Identities=26% Similarity=0.590 Sum_probs=25.2
Q ss_pred CCCCcccceecccccccCCCHHHHHHHHHHCCCccccC
Q 016952 254 GYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSE 291 (380)
Q Consensus 254 Gy~~NH~TisVn~L~~r~~DIe~vn~~Lk~~G~~ln~~ 291 (380)
+..++|+++ .+.||+++.+.|+++|+++..+
T Consensus 70 ~~g~~~i~~-------~v~di~~~~~~l~~~G~~~~~~ 100 (128)
T TIGR03081 70 GGGIHHIAI-------EVDDIEAALETLKEKGVRLIDE 100 (128)
T ss_pred CCceEEEEE-------EcCCHHHHHHHHHHCCCcccCC
Confidence 446788887 5679999999999999987653
No 16
>PRK10291 glyoxalase I; Provisional
Probab=43.75 E-value=21 Score=29.52 Aligned_cols=31 Identities=26% Similarity=0.408 Sum_probs=25.8
Q ss_pred CCCCcccceecccccccCCCHHHHHHHHHHCCCccccC
Q 016952 254 GYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSE 291 (380)
Q Consensus 254 Gy~~NH~TisVn~L~~r~~DIe~vn~~Lk~~G~~ln~~ 291 (380)
|..++|+.+ ++.||+++.++|+++|+++...
T Consensus 63 g~~~~hlaf-------~V~d~~~~~~~l~~~G~~~~~~ 93 (129)
T PRK10291 63 GTAYGHIAL-------SVDNAAEACEKIRQNGGNVTRE 93 (129)
T ss_pred CCCeeEEEE-------EeCCHHHHHHHHHHcCCccccC
Confidence 557889997 6779999999999999976643
No 17
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=42.00 E-value=26 Score=29.51 Aligned_cols=32 Identities=16% Similarity=0.206 Sum_probs=26.3
Q ss_pred cCCCCcccceecccccccCCCHHHHHHHHHHCCCccccC
Q 016952 253 NGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSE 291 (380)
Q Consensus 253 ~Gy~~NH~TisVn~L~~r~~DIe~vn~~Lk~~G~~ln~~ 291 (380)
+|....|+.+ +++||++..+.|+++|+++-..
T Consensus 66 ~~~g~~hia~-------~V~Dvda~~~~l~~~G~~v~~~ 97 (136)
T cd08342 66 HGDGVCDVAF-------RVDDAAAAYERAVARGAKPVQE 97 (136)
T ss_pred cCCceEEEEE-------EeCCHHHHHHHHHHcCCeEccC
Confidence 4556778886 6789999999999999977654
No 18
>PRK11478 putative lyase; Provisional
Probab=41.66 E-value=23 Score=28.84 Aligned_cols=28 Identities=11% Similarity=0.364 Sum_probs=23.2
Q ss_pred CCCcccceecccccccCCCHHHHHHHHHHCCCccc
Q 016952 255 YAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLN 289 (380)
Q Consensus 255 y~~NH~TisVn~L~~r~~DIe~vn~~Lk~~G~~ln 289 (380)
..++|+++ ++.|++++.++|+++|+++.
T Consensus 74 ~g~~hi~f-------~v~d~~~~~~~l~~~G~~~~ 101 (129)
T PRK11478 74 CGLRHLAF-------SVDDIDAAVAHLESHNVKCE 101 (129)
T ss_pred CceeEEEE-------EeCCHHHHHHHHHHcCCeee
Confidence 34689886 56799999999999999764
No 19
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=41.35 E-value=19 Score=33.40 Aligned_cols=37 Identities=16% Similarity=0.268 Sum_probs=31.3
Q ss_pred hHhhhcCCCCcccceecccccccCCCHHHHHHHHHH-CCCccccC
Q 016952 248 AWTLVNGYAVNHVTISIHHLKSQLNNIKSLNQFIED-NGFRLNSE 291 (380)
Q Consensus 248 AWIa~~Gy~~NH~TisVn~L~~r~~DIe~vn~~Lk~-~G~~ln~~ 291 (380)
+.-++.||.+||..| +|.|++.-.+|-++ .|+.+..+
T Consensus 19 ~~~~~~~~~~~Ht~i-------~V~Dle~Si~FY~~vLG~~~~~r 56 (185)
T PLN03042 19 PDEATKGYIMQQTMF-------RIKDPKASLDFYSRVLGMSLLKR 56 (185)
T ss_pred CCCCCCCcEEEEEEE-------eeCCHHHHHHHHHhhcCCEEEEE
Confidence 455778999999998 88899999999875 89988765
No 20
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=38.49 E-value=29 Score=27.43 Aligned_cols=30 Identities=10% Similarity=0.402 Sum_probs=24.6
Q ss_pred CCCCcccceecccccccCCCHHHHHHHHHHCCCcccc
Q 016952 254 GYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNS 290 (380)
Q Consensus 254 Gy~~NH~TisVn~L~~r~~DIe~vn~~Lk~~G~~ln~ 290 (380)
+..++|+.+ ++.|++++.++|+++|+.+..
T Consensus 70 ~~g~~h~~~-------~v~d~~~~~~~l~~~G~~~~~ 99 (125)
T cd08352 70 ACGLRHLAF-------SVEDIEAAVKHLKAKGVEVEP 99 (125)
T ss_pred CCCceEEEE-------EeCCHHHHHHHHHHcCCcccc
Confidence 345789987 678999999999999997654
No 21
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=35.65 E-value=35 Score=34.21 Aligned_cols=40 Identities=15% Similarity=0.180 Sum_probs=35.1
Q ss_pred hhhhhHhhhcCCCCcccceecccccccCCCHHHHHHHHHHCCCcccc
Q 016952 244 SEYAAWTLVNGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNS 290 (380)
Q Consensus 244 SeyAAWIa~~Gy~~NH~TisVn~L~~r~~DIe~vn~~Lk~~G~~ln~ 290 (380)
|+.+.++..+|..+.|+++ ++.|++++.+.++++|..+..
T Consensus 60 s~~~~~~~~hg~gv~~iaf-------~V~Dv~~a~~~l~~~Ga~~v~ 99 (353)
T TIGR01263 60 SPAADFAAKHGDGVKDVAF-------RVDDAAAAFEAAVERGAEPVQ 99 (353)
T ss_pred chHHHHHHhCCCceEEEEE-------EECCHHHHHHHHHHCCCEecc
Confidence 5677788889999999997 788999999999999997754
No 22
>PF11615 DUF3249: Protein of unknown function (DUF3249); InterPro: IPR021653 This family of proteins represents the gene product of the protein CAF4, the yeast protein YKR036c. This protein contains seven WD40 repeats in its C terminus. The function however is unknown []. ; PDB: 2PQR_D.
Probab=35.59 E-value=6.4 Score=30.09 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=9.6
Q ss_pred eeeccCCCCCCCChhhhhhhccccCcC
Q 016952 333 AERLVLPQYKNLPEAEVKEFHRRDGFE 359 (380)
Q Consensus 333 aeR~~lp~~~~~~~~el~~~~~~~GF~ 359 (380)
+||||+|+|+. |-.-..+++||.
T Consensus 29 eqryplpngaa----eknlpslfegfk 51 (60)
T PF11615_consen 29 EQRYPLPNGAA----EKNLPSLFEGFK 51 (60)
T ss_dssp TTTS---SSS------TT---HHHHHH
T ss_pred ccccCCCCchh----hhccHHHHhhhh
Confidence 48999999752 333334566664
No 23
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=34.07 E-value=40 Score=25.77 Aligned_cols=31 Identities=6% Similarity=0.269 Sum_probs=24.7
Q ss_pred CCCCcccceecccccccCCCHHHHHHHHHHCCCccccC
Q 016952 254 GYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSE 291 (380)
Q Consensus 254 Gy~~NH~TisVn~L~~r~~DIe~vn~~Lk~~G~~ln~~ 291 (380)
+...+|+++ .+.||+++.+.|+++|+.+-..
T Consensus 62 ~~~~~~~~~-------~v~d~~~~~~~l~~~g~~~~~~ 92 (114)
T cd07245 62 PGRDDHIAF-------RVDDLDAFRARLKAAGVPYTES 92 (114)
T ss_pred CcccceEEE-------EeCCHHHHHHHHHHcCCCcccc
Confidence 345789887 5678999999999999976553
No 24
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=32.66 E-value=38 Score=26.91 Aligned_cols=30 Identities=13% Similarity=0.397 Sum_probs=24.2
Q ss_pred CCCCcccceecccccccCCCHHHHHHHHHHCCCcccc
Q 016952 254 GYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNS 290 (380)
Q Consensus 254 Gy~~NH~TisVn~L~~r~~DIe~vn~~Lk~~G~~ln~ 290 (380)
|..+.|+++ ++.||+++.++|+++|+.+-.
T Consensus 68 ~~~~~~i~~-------~v~did~~~~~l~~~G~~~~~ 97 (121)
T cd07233 68 GNGFGHLAF-------AVDDVYAACERLEEMGVEVTK 97 (121)
T ss_pred CCCeEEEEE-------EeCCHHHHHHHHHHCCCEEee
Confidence 345678886 677899999999999997654
No 25
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=30.41 E-value=33 Score=29.81 Aligned_cols=33 Identities=12% Similarity=0.190 Sum_probs=24.5
Q ss_pred CCCCcccceecccccccCCCHHHHHHHHHHCCCcccc
Q 016952 254 GYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNS 290 (380)
Q Consensus 254 Gy~~NH~TisVn~L~~r~~DIe~vn~~Lk~~G~~ln~ 290 (380)
+..+||+++.|..+ .|++++.+.|+++|+++..
T Consensus 54 ~~gl~Hiaf~v~~~----~~v~~~~~~l~~~G~~~~~ 86 (141)
T cd07258 54 SSHFHHVNFMVTDI----DDIGKALYRIKAHDVKVVF 86 (141)
T ss_pred CCceEEEEEECCCH----HHHHHHHHHHHHCCCcEEe
Confidence 34799999865544 3677889999999997643
No 26
>PF02330 MAM33: Mitochondrial glycoprotein; InterPro: IPR003428 This mitochondrial matrix protein family contains members of the MAM33 family which bind to the globular 'heads' of C1Q.; GO: 0005759 mitochondrial matrix; PDB: 3QV0_A 1YQF_F 3JV1_A 1P32_A 3RPX_A.
Probab=28.39 E-value=1.3e+02 Score=28.04 Aligned_cols=46 Identities=17% Similarity=0.379 Sum_probs=34.5
Q ss_pred cCcCCHHHHHHHHHHHhhcCCCchHHHHHHHhcCCCCCCCCHHHHHHHHHhhhhhhHhh
Q 016952 193 VDQMSPQIQEIIRKYTETSGSGKKHAALASALGSLTWGKPLYSEFQQLARESEYAAWTL 251 (380)
Q Consensus 193 vd~lS~~~q~iI~~lv~~~~~~~~~~~l~~~~~~~~W~~ps~adYe~L~~ESeyAAWIa 251 (380)
.+.|++.+|..+.+||..+ |.+..+..++ .+|-.-.+..+|..|+-
T Consensus 153 f~~LDe~Lq~~~~~yLeeR--GId~~la~fl-----------~~y~~~kEq~eYi~wL~ 198 (204)
T PF02330_consen 153 FDELDENLQDAFMNYLEER--GIDEELANFL-----------HDYSTDKEQREYIRWLK 198 (204)
T ss_dssp GGGSBHHHHHHHHHHHHHT--T-SHHHHHHH-----------HHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHh--CCCHHHHHHH-----------HHHHHHHHHHHHHHHHH
Confidence 4779999999999999987 4444433332 45677779999999985
No 27
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=26.88 E-value=1.5e+02 Score=24.71 Aligned_cols=28 Identities=4% Similarity=-0.167 Sum_probs=20.9
Q ss_pred ccceeeeecCCCccchhhHH-HhcCCeecce
Q 016952 136 YDHIAFRTFGLKRLALLEGL-VDVYLLSICD 165 (380)
Q Consensus 136 nDHiAfRT~~~~~~Giar~F-~~LGY~~~G~ 165 (380)
.+|++|++-++++. .++| ..||++..+.
T Consensus 4 l~hi~l~v~dl~~s--~~FY~~vlGl~~~~~ 32 (134)
T cd08360 4 LGHVVLFVPDVEAA--EAFYRDRLGFRVSDR 32 (134)
T ss_pred eeEEEEEcCCHHHH--HHHHHHhcCCEEEEE
Confidence 57999998776654 6677 4589998765
No 28
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=26.78 E-value=58 Score=28.75 Aligned_cols=28 Identities=21% Similarity=0.203 Sum_probs=23.6
Q ss_pred CCCCcccceecccccccCCCHHHHHHHHHHCCCcc
Q 016952 254 GYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRL 288 (380)
Q Consensus 254 Gy~~NH~TisVn~L~~r~~DIe~vn~~Lk~~G~~l 288 (380)
+-.++|+++ .+.||+++.++|+++|++.
T Consensus 91 ~~g~~Hla~-------~v~dida~~~~l~~~G~~~ 118 (162)
T TIGR03645 91 KTGVFHFCV-------QDPDVEGLAERIVAAGGKK 118 (162)
T ss_pred cccceEEEE-------EcCCHHHHHHHHHHcCCcc
Confidence 456899997 5679999999999999764
No 29
>PF08187 Tetradecapep: Myoactive tetradecapeptides family; InterPro: IPR012619 This entry consists of myoactive tetradecapeptides that are isolated from the gut of Earthworms, Eisenia foetida (Common brandling worm) and Pheretima vittata (Earthworm). These peptides were termed ETP and PTP respectively. Both peptides showed a potent excitatory action on spontaneous contractions of the anterior gut. These peptides show similarity to Molluscan tetradecapeptides and Arthropodan tridecapeptides [].; GO: 0005184 neuropeptide hormone activity, 0007218 neuropeptide signaling pathway, 0005576 extracellular region
Probab=26.01 E-value=33 Score=19.61 Aligned_cols=10 Identities=60% Similarity=1.079 Sum_probs=8.9
Q ss_pred CcCCCChhHH
Q 016952 357 GFEVGNADKI 366 (380)
Q Consensus 357 GF~a~NAdkI 366 (380)
||..|.||.|
T Consensus 1 gf~dg~adri 10 (14)
T PF08187_consen 1 GFRDGSADRI 10 (14)
T ss_pred Cccccchhhh
Confidence 7888999988
No 30
>PF10097 DUF2335: Predicted membrane protein (DUF2335); InterPro: IPR019284 This entry is represented by Xylella phage Xfas53, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=25.63 E-value=43 Score=25.21 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=19.5
Q ss_pred ccCcCCCChhHHHHhhhhhhhhh
Q 016952 355 RDGFEVGNADKIFESTSKEQLTR 377 (380)
Q Consensus 355 ~~GF~a~NAdkIFEST~~~~~~~ 377 (380)
|+--+.|-|+.||+|+-.+|.-|
T Consensus 9 Ye~i~Pg~aerI~~mae~eq~hR 31 (50)
T PF10097_consen 9 YEQILPGAAERIFAMAEKEQEHR 31 (50)
T ss_pred HHhHCcCHHHHHHHHHHHHHHHH
Confidence 77778999999999998887554
No 31
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=25.22 E-value=64 Score=27.61 Aligned_cols=30 Identities=13% Similarity=0.257 Sum_probs=24.1
Q ss_pred CCCCcccceecccccccCCCHHHHHHHHHHCCCcccc
Q 016952 254 GYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNS 290 (380)
Q Consensus 254 Gy~~NH~TisVn~L~~r~~DIe~vn~~Lk~~G~~ln~ 290 (380)
+...+|+.+ ++.||+++.+.|+++|+++..
T Consensus 84 ~~g~~hi~f-------~v~dld~~~~~l~~~G~~~~~ 113 (150)
T TIGR00068 84 GNGFGHIAI-------GVDDVYKACERVRALGGNVVR 113 (150)
T ss_pred CCceeEEEE-------ecCCHHHHHHHHHHcCCcccc
Confidence 345788886 567999999999999997653
No 32
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=25.21 E-value=1e+02 Score=24.13 Aligned_cols=28 Identities=32% Similarity=0.676 Sum_probs=24.2
Q ss_pred CcccceecccccccCCCHHHHHHHHHH-CCCccccC
Q 016952 257 VNHVTISIHHLKSQLNNIKSLNQFIED-NGFRLNSE 291 (380)
Q Consensus 257 ~NH~TisVn~L~~r~~DIe~vn~~Lk~-~G~~ln~~ 291 (380)
+||+++ ++.|+++.-++.++ .|+.....
T Consensus 2 l~Hi~i-------~v~d~~~~~~FY~~~lG~~~~~~ 30 (128)
T PF00903_consen 2 LDHIAI-------RVKDLEKAIDFYTDVLGFRLVEE 30 (128)
T ss_dssp EEEEEE-------EESCHHHHHHHHHHTTTSEEEEE
T ss_pred eEEEEE-------EcCCHHHHHHHHHHHhCCcEEee
Confidence 689997 77899999999999 89988775
No 33
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=24.91 E-value=78 Score=23.60 Aligned_cols=31 Identities=13% Similarity=0.311 Sum_probs=25.4
Q ss_pred CCCCcccceecccccccCCCHHHHHHHHHHCCCccccC
Q 016952 254 GYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSE 291 (380)
Q Consensus 254 Gy~~NH~TisVn~L~~r~~DIe~vn~~Lk~~G~~ln~~ 291 (380)
+...+|+.+ ++.|++++.+.|+++|+.+...
T Consensus 59 ~~~~~~~~~-------~v~~~~~~~~~l~~~g~~~~~~ 89 (112)
T cd06587 59 GGGGVHLAF-------EVDDVDAAYERLKAAGVEVLGE 89 (112)
T ss_pred CCCeeEEEE-------ECCCHHHHHHHHHHcCCcccCC
Confidence 456889887 6789999999999999877654
No 34
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=24.28 E-value=47 Score=27.83 Aligned_cols=30 Identities=17% Similarity=0.414 Sum_probs=23.9
Q ss_pred CCcccceecccccccCCCHHHHHHHHHHCCCcccc
Q 016952 256 AVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNS 290 (380)
Q Consensus 256 ~~NH~TisVn~L~~r~~DIe~vn~~Lk~~G~~ln~ 290 (380)
.++|+++.|.. .||+++.+.|+++|+++..
T Consensus 66 ~~~Hiaf~v~~-----~~ld~~~~~l~~~gv~~~~ 95 (131)
T cd08364 66 TYNHIAFKISD-----SDVDEYTERIKALGVEMKP 95 (131)
T ss_pred CceEEEEEcCH-----HHHHHHHHHHHHCCCEEec
Confidence 47899986541 3899999999999997654
No 35
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=23.25 E-value=74 Score=29.54 Aligned_cols=28 Identities=14% Similarity=0.298 Sum_probs=24.0
Q ss_pred CCcccceecccccccCCCHHHHHHHHHHCCCcccc
Q 016952 256 AVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNS 290 (380)
Q Consensus 256 ~~NH~TisVn~L~~r~~DIe~vn~~Lk~~G~~ln~ 290 (380)
.+.|+.+ ++.||+++.++|+++|+++..
T Consensus 121 G~~Hlaf-------~V~Dvd~~~~~L~~~Gv~v~~ 148 (185)
T PLN03042 121 GFGHIGI-------TVDDVYKACERFEKLGVEFVK 148 (185)
T ss_pred CccEEEE-------EcCCHHHHHHHHHHCCCeEEe
Confidence 5789997 677999999999999997653
No 36
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=22.00 E-value=75 Score=28.04 Aligned_cols=30 Identities=17% Similarity=0.372 Sum_probs=22.7
Q ss_pred CCcccceecccccccCCCHHHHHHHHHHCCCccc
Q 016952 256 AVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLN 289 (380)
Q Consensus 256 ~~NH~TisVn~L~~r~~DIe~vn~~Lk~~G~~ln 289 (380)
.++|+++.|... .|++++.++|+++|+.+.
T Consensus 65 ~l~Hiaf~v~d~----~dvd~~~~~L~~~Gv~~~ 94 (157)
T cd08347 65 TVHHVAFRVPDD----EELEAWKERLEALGLPVS 94 (157)
T ss_pred ceEEEEEECCCH----HHHHHHHHHHHHCCCCcc
Confidence 578999844322 249999999999999754
No 37
>COG5646 Uncharacterized conserved protein [Function unknown]
Probab=21.55 E-value=1.4e+02 Score=26.81 Aligned_cols=82 Identities=15% Similarity=0.378 Sum_probs=53.7
Q ss_pred CCHHHHHHHHHHHhhcCCCchHHHHHHHhcCCCCCCCCHHHHHHHHHhhhhhhHhhhcCCCCcccceeccccc--ccCCC
Q 016952 196 MSPQIQEIIRKYTETSGSGKKHAALASALGSLTWGKPLYSEFQQLARESEYAAWTLVNGYAVNHVTISIHHLK--SQLNN 273 (380)
Q Consensus 196 lS~~~q~iI~~lv~~~~~~~~~~~l~~~~~~~~W~~ps~adYe~L~~ESeyAAWIa~~Gy~~NH~TisVn~L~--~r~~D 273 (380)
..|+.++.++.+..++. +.-.++..+-.|.+|.+.. +|.-+=||.++=+||. |.+.-
T Consensus 12 ~~pe~r~r~~elr~~ik-----~~~Pea~e~Is~~~P~f~~----------------~gn~LihfsvakkH~~~~P~~~g 70 (126)
T COG5646 12 EPPELRERTEELRTWIK-----AKFPEAAEEISYNLPMFTN----------------QGNFLIHFSVAKKHLGVYPEVAG 70 (126)
T ss_pred CCHHHHHHHHHHHHHHH-----HHCcchhhhhhhcCcceec----------------CCceEEEeehhhccCccCCcccc
Confidence 35677777777765532 1112333344555554321 3665668888888883 67889
Q ss_pred HHHHHHHHHHCCCccccCCCeEEeCCC
Q 016952 274 IKSLNQFIEDNGFRLNSEGGVLKVSPD 300 (380)
Q Consensus 274 Ie~vn~~Lk~~G~~ln~~GG~IkgSP~ 300 (380)
|+.+.+.|+..|+ ...-|.|+.+++
T Consensus 71 I~~fa~~l~~~~y--d~tkg~irfp~~ 95 (126)
T COG5646 71 IDAFADELKEAGY--DYTKGTIRFPWK 95 (126)
T ss_pred hHHHHHHHhhhcc--cccceeEecCcc
Confidence 9999999999999 445567777665
No 38
>PF02109 DAD: DAD family; InterPro: IPR003038 Members of this family are thought to be integral membrane proteins. Some members of this family have been shown to cause apoptosis if mutated [], these proteins are known as DAD for defender against death. The family also includes the epsilon subunit of the oligosaccharyltransferase that is involved in N-linked glycosylation [].; GO: 0016021 integral to membrane
Probab=20.50 E-value=1.2e+02 Score=26.57 Aligned_cols=28 Identities=18% Similarity=0.415 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHH
Q 016952 100 FFRTVLQSMEAVYLNRNPTAKAVLELVQ 127 (380)
Q Consensus 100 ~Lr~~f~~Lw~~Y~~~vP~a~~i~~lv~ 127 (380)
.+.++++.+|+.|.+.+|.=-++++...
T Consensus 3 ~~~~~~~~~~~~Y~~~Tp~rlkliD~fl 30 (112)
T PF02109_consen 3 SFQEILSNFWQSYLKKTPQRLKLIDAFL 30 (112)
T ss_pred hHHHHHHHHHHHHHHhCCchhhhHHHHH
Confidence 5678999999999999998777777654
No 39
>PF08073 CHDNT: CHDNT (NUC034) domain; InterPro: IPR012958 The CHD N-terminal domain is found in PHD/RING fingers and chromo domain-associated helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.40 E-value=1.4e+02 Score=23.29 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=22.0
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhCC
Q 016952 93 SFQGGESFFRTVLQSMEAVYLNRNP 117 (380)
Q Consensus 93 ~~~~~~~~Lr~~f~~Lw~~Y~~~vP 117 (380)
-|+..-+.+-.+++..|+.|...+|
T Consensus 31 NPk~~~sKl~~l~~AKwrEF~~~np 55 (55)
T PF08073_consen 31 NPKAPMSKLMMLLQAKWREFQEHNP 55 (55)
T ss_pred CCCCcHHHHHHHHHHHHHHHHhcCC
Confidence 4778888999999999999998887
No 40
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=20.29 E-value=71 Score=25.83 Aligned_cols=34 Identities=9% Similarity=0.154 Sum_probs=25.5
Q ss_pred CCCCcccceecccccccCCCHHHHHHHHHHCCCccccC
Q 016952 254 GYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSE 291 (380)
Q Consensus 254 Gy~~NH~TisVn~L~~r~~DIe~vn~~Lk~~G~~ln~~ 291 (380)
+..+.|+++.|... .||+++.+.|+++|+++...
T Consensus 66 ~~g~~hia~~v~~~----~d~~~~~~~l~~~g~~~~~~ 99 (128)
T cd07242 66 NPGLHHLAFRAPSR----EAVDELYARLAKRGAEILYA 99 (128)
T ss_pred CcCeeEEEEEcCCH----HHHHHHHHHHHHcCCeEecC
Confidence 44577988755432 47999999999999977664
No 41
>PF11080 DUF2622: Protein of unknown function (DUF2622); InterPro: IPR022597 This family is conserved in the Enterobacteriaceae family. The function is not known.
Probab=20.20 E-value=84 Score=26.95 Aligned_cols=32 Identities=25% Similarity=0.486 Sum_probs=23.0
Q ss_pred cceecccccccCCCHHHHHHHHHHCCC--ccccC
Q 016952 260 VTISIHHLKSQLNNIKSLNQFIEDNGF--RLNSE 291 (380)
Q Consensus 260 ~TisVn~L~~r~~DIe~vn~~Lk~~G~--~ln~~ 291 (380)
+-|.|+-......|+.+++..|.+.|| .|+++
T Consensus 9 YVVt~~~~e~~l~d~~~L~~~lt~~GF~~tl~D~ 42 (96)
T PF11080_consen 9 YVVTFEYQEAGLTDINELNNHLTRAGFSTTLTDE 42 (96)
T ss_pred EEEEEEeccCChHHHHHHHHHHHhcCceeEEecC
Confidence 344455555567799999999999999 34444
Done!