BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016953
(380 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 529
Score = 504 bits (1299), Expect = e-143, Method: Compositional matrix adjust.
Identities = 243/367 (66%), Positives = 304/367 (82%), Gaps = 1/367 (0%)
Query: 10 ILGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLE 69
+ G+R G+ +R+QNVMA ++ANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILK+LE
Sbjct: 1 VFGDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLE 60
Query: 70 VEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMR 129
VEHPAAKVL ELA+LQD+EVGDGTTSVVI+AAELLK A++LV+ KIHPTS+ISGYRLA +
Sbjct: 61 VEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACK 120
Query: 130 EACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFANLVVEAVQAVKMTNQRG 189
EA +Y++E L + ++LG+D L+N AKTSMSSK+IG + DFFANLVV+AV A+K T+ RG
Sbjct: 121 EAVRYISENLIINTDELGRDCLINAAKTSMSSKVIGINGDFFANLVVDAVLAIKYTDIRG 180
Query: 190 EVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKM 249
+ +YP+ IN+LKAHG+S +S +NGYALN +QGMP R+ AKIACLDF+LQKTKM
Sbjct: 181 QPRYPVNSINVLKAHGRSQMESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKM 240
Query: 250 QLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAI 309
+LGVQV++TDP +L++IRQRE+D+TKERI+K+L GANVILTT GIDDM LKYFVEAGA+
Sbjct: 241 KLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAM 300
Query: 310 AVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKG 369
AVRRV K D++ IAKA+GAT++ST A++EGEETF++S+LG I+IK
Sbjct: 301 AVRRVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKN 360
Query: 370 TKT-TSA 375
TK TSA
Sbjct: 361 TKARTSA 367
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|I Chain I, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|AA Chain a, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|II Chain i, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|A Chain A, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|I Chain I, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|AA Chain a, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|II Chain i, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 559
Score = 476 bits (1226), Expect = e-135, Method: Compositional matrix adjust.
Identities = 228/373 (61%), Positives = 298/373 (79%), Gaps = 2/373 (0%)
Query: 5 SQTLDILGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATI 64
S TL + GE+ +G D+R QNV+A AVAN+VKSSLGPVGLDKMLVDDIGD T+TNDGATI
Sbjct: 10 SDTLFLGGEKISGDDIRNQNVLATMAVANVVKSSLGPVGLDKMLVDDIGDFTVTNDGATI 69
Query: 65 LKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGY 124
L +L+V+HPA K+LVELA+ QDRE+GDGTTSVVI+A+ELLKRAN+LV+NKIHPT+II+G+
Sbjct: 70 LSLLDVQHPAGKILVELAQQQDREIGDGTTSVVIIASELLKRANELVKNKIHPTTIITGF 129
Query: 125 RLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFANLVVEAVQAVKM 184
R+A+REA +++NE L+ V+ LGK++L+N AKTSMSSK+IG DSDFF+N+VV+A+ AVK
Sbjct: 130 RVALREAIRFINEVLSTSVDTLGKETLINIAKTSMSSKIIGADSDFFSNMVVDALLAVKT 189
Query: 185 TNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPA--KIACLDF 242
N +GE+KYP+K +N+LKAHGKSA +S + GYALN A+Q MP R+A KIACLD
Sbjct: 190 QNSKGEIKYPVKAVNVLKAHGKSATESLLVPGYALNCTVASQAMPKRIAGGNVKIACLDL 249
Query: 243 NLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKY 302
NLQK +M +GVQ+ + DP +LE+IR+REA + ER++K++ AGA V+LTTKGIDD+ LK
Sbjct: 250 NLQKARMAMGVQINIDDPEQLEQIRKREAGIVLERVKKIIDAGAQVVLTTKGIDDLCLKE 309
Query: 303 FVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXX 362
FVEA + VRR +KED+R IA+ATGAT+VS+ +++EGEETF+SS LG
Sbjct: 310 FVEAKIMGVRRCKKEDLRRIARATGATLVSSMSNLEGEETFESSYLGLCDEVVQAKFSDD 369
Query: 363 XXIMIKGTKTTSA 375
I+IKGT S+
Sbjct: 370 ECILIKGTSKHSS 382
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum
pdb|1A6E|B Chain B, Thermosome-Mg-Adp-Alf3 Complex
Length = 543
Score = 258 bits (658), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 152/381 (39%), Positives = 224/381 (58%), Gaps = 11/381 (2%)
Query: 3 ISSQTLDILGE---RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITN 59
I+ Q + IL E R++G+D +N+ A A++N V+SSLGP G+DKMLVD +GD+ ITN
Sbjct: 2 IAGQPIFILKEGTKRESGKDAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITN 61
Query: 60 DGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTS 119
DG TILK ++VEHPAAK++VE+++ QD VGDGTT+ VI+A LL++A L+ +HPT
Sbjct: 62 DGVTILKEMDVEHPAAKMMVEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTV 121
Query: 120 IISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFANLVVEAV 179
I GYR+A EA + ++E ++ K+ K L+ A+TS++SK D A + EAV
Sbjct: 122 ISEGYRMASEEAKRVIDE-ISTKIGADEKALLLKMAQTSLNSKSASVAKDKLAEISYEAV 180
Query: 180 QAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIAC 239
++V + G+ I ++K G + D+ +NG ++ + GMP V AKIA
Sbjct: 181 KSVAEL-RDGKYYVDFDNIQVVKKQGGAIDDTQLINGIIVDKEKVHPGMPDVVKDAKIAL 239
Query: 240 LDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMA 299
LD L+ K + + + DP ++K +E +M +E ++K+ GANV++T KGIDDMA
Sbjct: 240 LDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGIDDMA 299
Query: 300 LKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXX 359
Y AG AVRRV+K DM +AKATGA++VST + SS LG+
Sbjct: 300 QHYLSRAGIYAVRRVKKSDMDKLAKATGASIVSTI------DEISSSDLGTAERVEQVKV 353
Query: 360 XXXXXIMIKGTKTTSAVCGLI 380
+ G K AV L+
Sbjct: 354 GEDYMTFVTGCKNPKAVSILV 374
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum
pdb|1A6E|A Chain A, Thermosome-Mg-Adp-Alf3 Complex
Length = 545
Score = 254 bits (650), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 148/369 (40%), Positives = 223/369 (60%), Gaps = 12/369 (3%)
Query: 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEH 72
+R+ G++ + N+ A +A+A+ V+++LGP G+DKMLVD IGD+ I+NDGATILK ++VEH
Sbjct: 16 QREQGKNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEH 75
Query: 73 PAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREAC 132
P AK++VE+++ QD VGDGTT+ V+++ ELLK+A L+ +HPT I +GYRLA+ EA
Sbjct: 76 PTAKMIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEAR 135
Query: 133 KYVNEKLAVKVEKLGKD-SLVNCAKTSMSSKLIGGDSDFFANLVVEAVQAVKMTNQRGEV 191
K ++E EK D +L A T++S K G +DF A+LVV+AV AV + G+
Sbjct: 136 KIIDE----IAEKSTDDATLRKIALTALSGKNTGLSNDFLADLVVKAVNAVAEV-RDGKT 190
Query: 192 KYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQL 251
I + K +G S D+ F++G ++ + MP V AKIA +D L+ K ++
Sbjct: 191 IVDTANIKVDKKNGGSVNDTQFISGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEI 250
Query: 252 GVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAV 311
+V ++DP +++ +E + K+ +EK+ K+GANV+L KGIDD+A Y + G AV
Sbjct: 251 EAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAV 310
Query: 312 RRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXXXXXXXIMIKGTK 371
RRV+K DM +AKATGA +V+ D+ S+LG + G K
Sbjct: 311 RRVKKSDMEKLAKATGAKIVTDLDDLT------PSVLGEAETVEERKIGDDRMTFVMGCK 364
Query: 372 TTSAVCGLI 380
AV LI
Sbjct: 365 NPKAVSILI 373
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|B Chain B, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|C Chain C, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|D Chain D, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|E Chain E, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|F Chain F, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|G Chain G, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|H Chain H, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|I Chain I, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
Length = 553
Score = 245 bits (626), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 136/336 (40%), Positives = 209/336 (62%), Gaps = 4/336 (1%)
Query: 14 RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHP 73
R G++ N+ A +AV +KS+ GP G+DKMLVD +GD+TITNDGATIL ++++HP
Sbjct: 25 RTYGKEAVRANIAAVKAVEEALKSTYGPRGMDKMLVDSLGDITITNDGATILDKMDLQHP 84
Query: 74 AAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACK 133
AAK+LV++A+ QD E DGT + VI + EL+K+A DL+ +HPT IISGY+ A A +
Sbjct: 85 AAKLLVQIAKGQDEETADGTKTAVIFSGELVKKAEDLLYKDVHPTIIISGYKKAEEVALQ 144
Query: 134 YVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFANLVVEAVQAVKMTNQRGEVKY 193
+ E LA V D L A TS+SSK + G ++ A++VV+AV V RG+ Y
Sbjct: 145 TIQE-LAQTVSINDTDLLRKIAMTSLSSKAVAGAREYIADIVVKAVTQV--AELRGDKWY 201
Query: 194 -PIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLG 252
+ I I+K G S D+ + G ++ GMP R+ AKIA +D +L+ K +L
Sbjct: 202 VDLDNIQIVKKAGGSINDTQLVYGIVVDKEVVHPGMPKRLENAKIALIDASLEVEKPELD 261
Query: 253 VQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVR 312
++ + DP +++K E ++ KE+++K+L GANVI+ KGID++A Y + G +AVR
Sbjct: 262 AEIRINDPTQMQKFLDEEENLIKEKVDKILATGANVIICQKGIDEVAQSYLAKKGVLAVR 321
Query: 313 RVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLL 348
R +K D+ +A+ATG +VS ++ ++ +SL+
Sbjct: 322 RAKKSDLEKLARATGGRVVSNIDEISEQDLGYASLI 357
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|B Chain B, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|C Chain C, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|D Chain D, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|E Chain E, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|F Chain F, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|G Chain G, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|H Chain H, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|I Chain I, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|J Chain J, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|K Chain K, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|L Chain L, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|M Chain M, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|N Chain N, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|O Chain O, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|P Chain P, Atomic Model Of Mm-Cpn In The Closed State
pdb|3KFB|A Chain A, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|B Chain B, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|C Chain C, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|D Chain D, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|E Chain E, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|F Chain F, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|G Chain G, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|H Chain H, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3RUQ|A Chain A, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|B Chain B, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|C Chain C, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|D Chain D, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
Length = 543
Score = 242 bits (617), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 134/347 (38%), Positives = 216/347 (62%), Gaps = 8/347 (2%)
Query: 5 SQTLDILGE---RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDG 61
SQ +L E R G+D + N++A + +A V+S+LGP G+DKMLVDD+GDV +TNDG
Sbjct: 2 SQQPGVLPENMKRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDG 61
Query: 62 ATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSII 121
TIL+ + VEHPAAK+L+E+A+ Q++EVGDGTT+ V+VA ELL++A +L+ +HPT ++
Sbjct: 62 VTILREMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVV 121
Query: 122 SGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFANLVVEAVQA 181
GY+ A ++A + + +A +V K+ L A TS++ K + A ++VEAV A
Sbjct: 122 KGYQAAAQKAQELLK-TIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSA 180
Query: 182 VKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLD 241
V + G+V + I I K G S D+ + G ++ R + MP +V AKIA L+
Sbjct: 181 V--VDDEGKVDKDL--IKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLN 236
Query: 242 FNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALK 301
++ + + ++ +TDP +L + ++E M K+ + ++ +GANV+ KGIDD+A
Sbjct: 237 CAIEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQH 296
Query: 302 YFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLL 348
Y + G +A RRV+K DM +AKATGA +++ D+ ++ D+ L+
Sbjct: 297 YLAKEGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLV 343
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp
pdb|3IZH|B Chain B, Mm-Cpn D386a With Atp
pdb|3IZH|C Chain C, Mm-Cpn D386a With Atp
pdb|3IZH|D Chain D, Mm-Cpn D386a With Atp
pdb|3IZH|E Chain E, Mm-Cpn D386a With Atp
pdb|3IZH|F Chain F, Mm-Cpn D386a With Atp
pdb|3IZH|G Chain G, Mm-Cpn D386a With Atp
pdb|3IZH|H Chain H, Mm-Cpn D386a With Atp
pdb|3IZH|I Chain I, Mm-Cpn D386a With Atp
pdb|3IZH|J Chain J, Mm-Cpn D386a With Atp
pdb|3IZH|K Chain K, Mm-Cpn D386a With Atp
pdb|3IZH|L Chain L, Mm-Cpn D386a With Atp
pdb|3IZH|M Chain M, Mm-Cpn D386a With Atp
pdb|3IZH|N Chain N, Mm-Cpn D386a With Atp
pdb|3IZH|O Chain O, Mm-Cpn D386a With Atp
pdb|3IZH|P Chain P, Mm-Cpn D386a With Atp
pdb|3IZM|A Chain A, Mm-Cpn Wildtype With Atp
pdb|3IZM|B Chain B, Mm-Cpn Wildtype With Atp
pdb|3IZM|C Chain C, Mm-Cpn Wildtype With Atp
pdb|3IZM|D Chain D, Mm-Cpn Wildtype With Atp
pdb|3IZM|E Chain E, Mm-Cpn Wildtype With Atp
pdb|3IZM|F Chain F, Mm-Cpn Wildtype With Atp
pdb|3IZM|G Chain G, Mm-Cpn Wildtype With Atp
pdb|3IZM|H Chain H, Mm-Cpn Wildtype With Atp
pdb|3IZM|I Chain I, Mm-Cpn Wildtype With Atp
pdb|3IZM|J Chain J, Mm-Cpn Wildtype With Atp
pdb|3IZM|K Chain K, Mm-Cpn Wildtype With Atp
pdb|3IZM|L Chain L, Mm-Cpn Wildtype With Atp
pdb|3IZM|M Chain M, Mm-Cpn Wildtype With Atp
pdb|3IZM|N Chain N, Mm-Cpn Wildtype With Atp
pdb|3IZM|O Chain O, Mm-Cpn Wildtype With Atp
pdb|3IZM|P Chain P, Mm-Cpn Wildtype With Atp
Length = 513
Score = 241 bits (616), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 130/335 (38%), Positives = 211/335 (62%), Gaps = 5/335 (1%)
Query: 14 RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHP 73
R G+D + N++A + +A V+S+LGP G+DKMLVDD+GDV +TNDG TIL+ + VEHP
Sbjct: 8 RYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHP 67
Query: 74 AAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACK 133
AAK+L+E+A+ Q++EVGDGTT+ V+VA ELL++A +L+ +HPT ++ GY+ A ++A +
Sbjct: 68 AAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQE 127
Query: 134 YVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFANLVVEAVQAVKMTNQRGEVKY 193
+ +A +V K+ L A TS++ K + A ++VEAV AV + G+V
Sbjct: 128 LLK-TIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAV--VDDEGKVDK 184
Query: 194 PIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGV 253
+ I I K G S D+ + G ++ R + MP +V AKIA L+ ++ + +
Sbjct: 185 DL--IKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETETDA 242
Query: 254 QVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRR 313
++ +TDP +L + ++E M K+ + ++ +GANV+ KGIDD+A Y + G +A RR
Sbjct: 243 EIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARR 302
Query: 314 VRKEDMRHIAKATGATMVSTFADMEGEETFDSSLL 348
V+K DM +AKATGA +++ D+ ++ D+ L+
Sbjct: 303 VKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLV 337
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
Length = 548
Score = 241 bits (615), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 139/381 (36%), Positives = 222/381 (58%), Gaps = 11/381 (2%)
Query: 3 ISSQTLDILGE---RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITN 59
+S Q + IL E R G+D + N++A + +A V+++LGP G+DKMLVD +GD+ +TN
Sbjct: 4 LSGQPVVILPEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTN 63
Query: 60 DGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTS 119
DGATIL ++++HPAAK++VE+A+ QD+E GDGTT+ V++A ELL++A +L+ IHP+
Sbjct: 64 DGATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSI 123
Query: 120 IISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFANLVVEAV 179
I GY LA +A + ++E +A++V+ +++L+ A TS++ K + A L VEAV
Sbjct: 124 ITKGYALAAEKAQEILDE-IAIRVDPDDEETLLKIAATSITGKNAESHKELLAKLAVEAV 182
Query: 180 QAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIAC 239
+ V + G+ + I K G+ +S + G ++ MP RV AKIA
Sbjct: 183 KQV-AEKKDGKYVVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVENAKIAL 241
Query: 240 LDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMA 299
++ L+ K + ++ +T P +L ++E M K+ ++ + + GANV+ KGIDD+A
Sbjct: 242 INEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLA 301
Query: 300 LKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXX 359
Y + G +AVRRV+K DM +AKATGA +V+ D+ E+ LG
Sbjct: 302 QHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPED------LGYAEVVEERKL 355
Query: 360 XXXXXIMIKGTKTTSAVCGLI 380
I ++G K AV LI
Sbjct: 356 AGENMIFVEGCKNPKAVTILI 376
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUV|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUW|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
Length = 543
Score = 240 bits (612), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 134/347 (38%), Positives = 216/347 (62%), Gaps = 8/347 (2%)
Query: 5 SQTLDILGE---RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDG 61
SQ +L E R G+D + N++A + +A V+S+LGP G+DKMLVDD+GDV +TNDG
Sbjct: 2 SQQPGVLPENMKRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDG 61
Query: 62 ATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSII 121
TIL+ + VEHPAAK+L+E+A+ Q++EVGDGTT+ V+VA ELL++A +L+ +HPT ++
Sbjct: 62 VTILREMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVV 121
Query: 122 SGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFANLVVEAVQA 181
GY+ A ++A + + +A +V K+ L A TS++ K + A ++VEAV A
Sbjct: 122 KGYQAAAQKAQELLK-TIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSA 180
Query: 182 VKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLD 241
V + G+V + I I K G S D+ + G ++ R + MP +V AKIA L+
Sbjct: 181 V--VDDEGKVDKDL--IKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLN 236
Query: 242 FNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALK 301
++ + + ++ +TDP +L + ++E M K+ + ++ +GANV+ KGIDD+A
Sbjct: 237 CAIEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQH 296
Query: 302 YFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLL 348
Y + G +A RRV+K DM +AKATGA +++ A + ++ D+ L+
Sbjct: 297 YLAKEGIVAARRVKKSDMEKLAKATGANVIAAIAALSAQDLGDAGLV 343
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp
pdb|3IZI|B Chain B, Mm-Cpn Rls With Atp
pdb|3IZI|C Chain C, Mm-Cpn Rls With Atp
pdb|3IZI|D Chain D, Mm-Cpn Rls With Atp
pdb|3IZI|E Chain E, Mm-Cpn Rls With Atp
pdb|3IZI|F Chain F, Mm-Cpn Rls With Atp
pdb|3IZI|G Chain G, Mm-Cpn Rls With Atp
pdb|3IZI|H Chain H, Mm-Cpn Rls With Atp
pdb|3IZI|I Chain I, Mm-Cpn Rls With Atp
pdb|3IZI|J Chain J, Mm-Cpn Rls With Atp
pdb|3IZI|K Chain K, Mm-Cpn Rls With Atp
pdb|3IZI|L Chain L, Mm-Cpn Rls With Atp
pdb|3IZI|M Chain M, Mm-Cpn Rls With Atp
pdb|3IZI|N Chain N, Mm-Cpn Rls With Atp
pdb|3IZI|O Chain O, Mm-Cpn Rls With Atp
pdb|3IZI|P Chain P, Mm-Cpn Rls With Atp
pdb|3IZJ|A Chain A, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|B Chain B, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|C Chain C, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|D Chain D, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|E Chain E, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|F Chain F, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|G Chain G, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|H Chain H, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|I Chain I, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|J Chain J, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|K Chain K, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|L Chain L, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|M Chain M, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|N Chain N, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|O Chain O, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|P Chain P, Mm-Cpn Rls With Atp And Alfx
Length = 513
Score = 239 bits (611), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 130/335 (38%), Positives = 211/335 (62%), Gaps = 5/335 (1%)
Query: 14 RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHP 73
R G+D + N++A + +A V+S+LGP G+DKMLVDD+GDV +TNDG TIL+ + VEHP
Sbjct: 8 RYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHP 67
Query: 74 AAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACK 133
AAK+L+E+A+ Q++EVGDGTT+ V+VA ELL++A +L+ +HPT ++ GY+ A ++A +
Sbjct: 68 AAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQE 127
Query: 134 YVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFANLVVEAVQAVKMTNQRGEVKY 193
+ +A +V K+ L A TS++ K + A ++VEAV AV + G+V
Sbjct: 128 LLK-TIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAV--VDDEGKVDK 184
Query: 194 PIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGV 253
+ I I K G S D+ + G ++ R + MP +V AKIA L+ ++ + +
Sbjct: 185 DL--IKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETETDA 242
Query: 254 QVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRR 313
++ +TDP +L + ++E M K+ + ++ +GANV+ KGIDD+A Y + G +A RR
Sbjct: 243 EIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARR 302
Query: 314 VRKEDMRHIAKATGATMVSTFADMEGEETFDSSLL 348
V+K DM +AKATGA +++ A + ++ D+ L+
Sbjct: 303 VKKSDMEKLAKATGANVIAAIAALSAQDLGDAGLV 337
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|E Chain E, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|F Chain F, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|G Chain G, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|H Chain H, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
Length = 548
Score = 239 bits (611), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 139/381 (36%), Positives = 222/381 (58%), Gaps = 11/381 (2%)
Query: 3 ISSQTLDILGE---RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITN 59
+S Q + IL E R G+D + N++A + +A V+++LGP G+DKMLVD +GD+ +TN
Sbjct: 4 LSGQPVVILPEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTN 63
Query: 60 DGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTS 119
D ATIL ++++HPAAK++VE+A+ QD+E GDGTT+ V++A ELL++A +L+ IHP+
Sbjct: 64 DCATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSI 123
Query: 120 IISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFANLVVEAV 179
II GY LA +A + ++E +A++V+ +++L+ A TS++ K + A L VEAV
Sbjct: 124 IIKGYALAAEKAQEILDE-IAIRVDPDDEETLLKIAATSITGKNAESHKELLAKLAVEAV 182
Query: 180 QAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIAC 239
+ V + G+ + I K G+ +S + G ++ MP RV AKIA
Sbjct: 183 KQV-AEKKDGKYVVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVENAKIAL 241
Query: 240 LDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMA 299
++ L+ K + ++ +T P +L ++E M K+ ++ + + GANV+ KGIDD+A
Sbjct: 242 INEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLA 301
Query: 300 LKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXX 359
Y + G +AVRRV+K DM +AKATGA +V+ D+ E+ LG
Sbjct: 302 QHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPED------LGYAEVVEERKL 355
Query: 360 XXXXXIMIKGTKTTSAVCGLI 380
I ++G K AV LI
Sbjct: 356 AGENMIFVEGCKNPKAVTILI 376
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q3Q|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
Length = 548
Score = 237 bits (605), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 138/381 (36%), Positives = 221/381 (58%), Gaps = 11/381 (2%)
Query: 3 ISSQTLDILGE---RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITN 59
+S Q + IL E R G+D + N++A + +A V+++LGP G+DKMLVD +GD+ +TN
Sbjct: 4 LSGQPVVILPEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTN 63
Query: 60 DGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTS 119
D ATIL ++++HPAAK++VE+A+ QD+E GDGTT+ V++A ELL++A +L+ IHP+
Sbjct: 64 DCATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSI 123
Query: 120 IISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFANLVVEAV 179
I GY LA +A + ++E +A++V+ +++L+ A TS++ K + A L VEAV
Sbjct: 124 ITKGYALAAEKAQEILDE-IAIRVDPDDEETLLKIAATSITGKNAESHKELLAKLAVEAV 182
Query: 180 QAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIAC 239
+ V + G+ + I K G+ +S + G ++ MP RV AKIA
Sbjct: 183 KQV-AEKKDGKYVVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVENAKIAL 241
Query: 240 LDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMA 299
++ L+ K + ++ +T P +L ++E M K+ ++ + + GANV+ KGIDD+A
Sbjct: 242 INEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLA 301
Query: 300 LKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSXXXXXXXXX 359
Y + G +AVRRV+K DM +AKATGA +V+ D+ E+ LG
Sbjct: 302 QHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPED------LGYAEVVEERKL 355
Query: 360 XXXXXIMIKGTKTTSAVCGLI 380
I ++G K AV LI
Sbjct: 356 AGENMIFVEGCKNPKAVTILI 376
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|B Chain B, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|C Chain C, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|D Chain D, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|E Chain E, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|F Chain F, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|G Chain G, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|H Chain H, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|I Chain I, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|J Chain J, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|K Chain K, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|L Chain L, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|M Chain M, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|N Chain N, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|O Chain O, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|P Chain P, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3KFE|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|E Chain E, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|F Chain F, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|G Chain G, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|H Chain H, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
Length = 521
Score = 224 bits (570), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 130/347 (37%), Positives = 207/347 (59%), Gaps = 30/347 (8%)
Query: 5 SQTLDILGE---RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDG 61
SQ +L E R G+D + N++A + +A V+S+LGP G+DKMLVDD+GDV +TNDG
Sbjct: 2 SQQPGVLPENMKRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDG 61
Query: 62 ATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSII 121
TIL+ + VEHPAAK+L+E+A+ Q++EVGDGTT+ V+VA ELL++A +L+ +HPT ++
Sbjct: 62 VTILREMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVV 121
Query: 122 SGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFANLVVEAVQA 181
GY+ A ++A + + + +A +V K+ L A TS++ K + A ++VEAV A
Sbjct: 122 KGYQAAAQKAQELL-KTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSA 180
Query: 182 VKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLD 241
V + G+V + I I K G S D+ + G ++ R + MP +V AKIA L+
Sbjct: 181 V--VDDEGKVDKDL--IKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLN 236
Query: 242 FNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALK 301
+++T ++M K+ + ++ +GANV+ KGIDD+A
Sbjct: 237 CAIEETA----------------------SEMLKDMVAEIKASGANVLFCQKGIDDLAQH 274
Query: 302 YFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLL 348
Y + G +A RRV+K DM +AKATGA +++ D+ ++ D+ L+
Sbjct: 275 YLAKEGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLV 321
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|B Chain B, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|C Chain C, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|D Chain D, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|E Chain E, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|F Chain F, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|G Chain G, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|H Chain H, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|I Chain I, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|J Chain J, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|K Chain K, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|L Chain L, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|M Chain M, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|N Chain N, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|O Chain O, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|P Chain P, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
Length = 491
Score = 224 bits (570), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 126/335 (37%), Positives = 202/335 (60%), Gaps = 27/335 (8%)
Query: 14 RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHP 73
R G+D + N++A + +A V+S+LGP G+DKMLVDD+GDV +TNDG TIL+ + VEHP
Sbjct: 8 RYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHP 67
Query: 74 AAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACK 133
AAK+L+E+A+ Q++EVGDGTT+ V+VA ELL++A +L+ +HPT ++ GY+ A ++A +
Sbjct: 68 AAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQE 127
Query: 134 YVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFANLVVEAVQAVKMTNQRGEVKY 193
+ + +A +V K+ L A TS++ K + A ++VEAV AV + G+V
Sbjct: 128 LL-KTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAV--VDDEGKVDK 184
Query: 194 PIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGV 253
+ I I K G S D+ + G ++ R + MP +V AKIA L+ +++T
Sbjct: 185 DL--IKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEETA----- 237
Query: 254 QVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRR 313
++M K+ + ++ +GANV+ KGIDD+A Y + G +A RR
Sbjct: 238 -----------------SEMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARR 280
Query: 314 VRKEDMRHIAKATGATMVSTFADMEGEETFDSSLL 348
V+K DM +AKATGA +++ D+ ++ D+ L+
Sbjct: 281 VKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLV 315
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp
pdb|3IZN|B Chain B, Mm-Cpn Deltalid With Atp
pdb|3IZN|C Chain C, Mm-Cpn Deltalid With Atp
pdb|3IZN|D Chain D, Mm-Cpn Deltalid With Atp
pdb|3IZN|E Chain E, Mm-Cpn Deltalid With Atp
pdb|3IZN|F Chain F, Mm-Cpn Deltalid With Atp
pdb|3IZN|G Chain G, Mm-Cpn Deltalid With Atp
pdb|3IZN|H Chain H, Mm-Cpn Deltalid With Atp
pdb|3IZN|I Chain I, Mm-Cpn Deltalid With Atp
pdb|3IZN|J Chain J, Mm-Cpn Deltalid With Atp
pdb|3IZN|K Chain K, Mm-Cpn Deltalid With Atp
pdb|3IZN|L Chain L, Mm-Cpn Deltalid With Atp
pdb|3IZN|M Chain M, Mm-Cpn Deltalid With Atp
pdb|3IZN|N Chain N, Mm-Cpn Deltalid With Atp
pdb|3IZN|O Chain O, Mm-Cpn Deltalid With Atp
pdb|3IZN|P Chain P, Mm-Cpn Deltalid With Atp
pdb|3J03|A Chain A, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|B Chain B, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|C Chain C, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|D Chain D, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|E Chain E, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|F Chain F, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|G Chain G, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|H Chain H, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|I Chain I, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|J Chain J, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|K Chain K, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|L Chain L, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|M Chain M, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|N Chain N, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|O Chain O, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|P Chain P, Lidless Mm-Cpn In The Closed State With AtpALFX
Length = 491
Score = 223 bits (569), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 126/335 (37%), Positives = 202/335 (60%), Gaps = 27/335 (8%)
Query: 14 RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHP 73
R G+D + N++A + +A V+S+LGP G+DKMLVDD+GDV +TNDG TIL+ + VEHP
Sbjct: 8 RYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHP 67
Query: 74 AAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACK 133
AAK+L+E+A+ Q++EVGDGTT+ V+VA ELL++A +L+ +HPT ++ GY+ A ++A +
Sbjct: 68 AAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQE 127
Query: 134 YVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFANLVVEAVQAVKMTNQRGEVKY 193
+ + +A +V K+ L A TS++ K + A ++VEAV AV + G+V
Sbjct: 128 LL-KTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAV--VDDEGKVDK 184
Query: 194 PIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGV 253
+ I I K G S D+ + G ++ R + MP +V AKIA L+ +++T
Sbjct: 185 DL--IKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEETA----- 237
Query: 254 QVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRR 313
++M K+ + ++ +GANV+ KGIDD+A Y + G +A RR
Sbjct: 238 -----------------SEMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARR 280
Query: 314 VRKEDMRHIAKATGATMVSTFADMEGEETFDSSLL 348
V+K DM +AKATGA +++ D+ ++ D+ L+
Sbjct: 281 VKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLV 315
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|B Chain B, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|C Chain C, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|D Chain D, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|E Chain E, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|F Chain F, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|G Chain G, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|H Chain H, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|I Chain I, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|J Chain J, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|K Chain K, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|L Chain L, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|M Chain M, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|N Chain N, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|O Chain O, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|P Chain P, Mm-Cpn Rls Deltalid With Atp
pdb|3IZL|A Chain A, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|B Chain B, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|C Chain C, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|D Chain D, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|E Chain E, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|F Chain F, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|G Chain G, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|H Chain H, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|I Chain I, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|J Chain J, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|K Chain K, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|L Chain L, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|M Chain M, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|N Chain N, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|O Chain O, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|P Chain P, Mm-Cpn Rls Deltalid With Atp And Alfx
Length = 491
Score = 222 bits (566), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 126/335 (37%), Positives = 202/335 (60%), Gaps = 27/335 (8%)
Query: 14 RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHP 73
R G+D + N++A + +A V+S+LGP G+DKMLVDD+GDV +TNDG TIL+ + VEHP
Sbjct: 8 RYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHP 67
Query: 74 AAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACK 133
AAK+L+E+A+ Q++EVGDGTT+ V+VA ELL++A +L+ +HPT ++ GY+ A ++A +
Sbjct: 68 AAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQE 127
Query: 134 YVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFANLVVEAVQAVKMTNQRGEVKY 193
+ + +A +V K+ L A TS++ K + A ++VEAV AV + G+V
Sbjct: 128 LL-KTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAV--VDDEGKVDK 184
Query: 194 PIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGV 253
+ I I K G S D+ + G ++ R + MP +V AKIA L+ +++T
Sbjct: 185 DL--IKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEETA----- 237
Query: 254 QVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRR 313
++M K+ + ++ +GANV+ KGIDD+A Y + G +A RR
Sbjct: 238 -----------------SEMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARR 280
Query: 314 VRKEDMRHIAKATGATMVSTFADMEGEETFDSSLL 348
V+K DM +AKATGA +++ A + ++ D+ L+
Sbjct: 281 VKKSDMEKLAKATGANVIAAIAALSAQDLGDAGLV 315
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 197 bits (501), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 110/330 (33%), Positives = 194/330 (58%), Gaps = 3/330 (0%)
Query: 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEH 72
+R++G+ V++ N+ A + +A+I+++ LGP + KML+D +G + +TNDG IL+ ++V+H
Sbjct: 3 KRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQH 62
Query: 73 PAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREAC 132
PAAK ++E++ QD EVGDGTTSV+I+A E+L A + ++HPT +IS YR A+ +
Sbjct: 63 PAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMI 122
Query: 133 KYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFANLVVEAVQAVKM-TNQRGEV 191
+ +K+++ V+ +D+++N +S+++K+I S N+ ++AV+ V+ N R E+
Sbjct: 123 STL-KKISIPVDTSNRDTMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEI 181
Query: 192 KYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQL 251
K + K G DS L G +N M + +I LD +L+ K +
Sbjct: 182 DIK-KYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGES 240
Query: 252 GVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAV 311
+ +T + +I Q E + ++ E +++ +V++T KGI D+A Y + A A+
Sbjct: 241 QTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANITAI 300
Query: 312 RRVRKEDMRHIAKATGATMVSTFADMEGEE 341
RRVRK D IA+A GA +VS ++ E+
Sbjct: 301 RRVRKTDNNRIARACGARIVSRPEELREED 330
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From
Methanococcoides Burtonii
Length = 500
Score = 196 bits (498), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 181/302 (59%), Gaps = 1/302 (0%)
Query: 47 MLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKR 106
MLVD +GD+ ITNDGATILK ++++HPAAK++VE+++ QD EVGDGTT+ +++ ELL +
Sbjct: 1 MLVDSMGDIVITNDGATILKEMDIQHPAAKMIVEVSKTQDAEVGDGTTTAAVLSGELLSK 60
Query: 107 ANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGG 166
A +L+ +H T I GYR A E C+ + E + + + + +L+ A T+++ K
Sbjct: 61 AEELIMKGVHSTIISEGYRHAA-EKCREILETITIAISPDDEAALIKIAGTAITGKGAEA 119
Query: 167 DSDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQ 226
+ + L V+AV+++ + G ++ I I K G S DS ++G ++ R+
Sbjct: 120 YKEKLSALTVKAVRSIVEEEEDGLKVNVLENIKIEKRAGGSIDDSELIDGLVIDKERSHP 179
Query: 227 GMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGA 286
MP +V AKI L ++ K ++ ++ +T P +++ +E M +E EK++ +GA
Sbjct: 180 NMPEKVENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKVIASGA 239
Query: 287 NVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSS 346
NV+ KGIDDMA Y +AG AVRRV+K D++ ++K TGAT++ + E+ +
Sbjct: 240 NVVFCQKGIDDMAQYYIEKAGIYAVRRVKKSDLKRLSKVTGATIIQDLDQITTEDVGTAG 299
Query: 347 LL 348
L+
Sbjct: 300 LV 301
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|M Chain M, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|EE Chain e, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|MM Chain m, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|E Chain E, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|M Chain M, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|EE Chain e, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|MM Chain m, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 562
Score = 196 bits (498), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 121/337 (35%), Positives = 198/337 (58%), Gaps = 18/337 (5%)
Query: 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEH 72
+RQ G + + +++A ++VA+I+K+SLGP GLDK+L+ G++TITNDGATIL +E+++
Sbjct: 39 KRQHGLEAKKSHILAARSVASIIKTSLGPRGLDKILISPDGEITITNDGATILSQMELDN 98
Query: 73 PAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREAC 132
AK+LV+L++ QD E+GDGTT VV++A+ LL +A +L++ IHP I +G+ A + A
Sbjct: 99 EIAKLLVQLSKSQDDEIGDGTTGVVVLASALLDQALELIQKGIHPIKIANGFDEAAKLAI 158
Query: 133 KYVNE---KLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFANLVVEAVQAVKMTNQRG 189
+ E ++ ++L +D L+ AKTS+ SK++ D D FA + VEAV V M R
Sbjct: 159 SKLEETCDDISASNDELFRDFLLRAAKTSLGSKIVSKDHDRFAEMAVEAVINV-MDKDRK 217
Query: 190 EVKYPIKGINILKAHGK---SARDSYFLNGYALNAFRAAQGMPLRVAP------AKIACL 240
+V + +++K G+ S DS +NG L+ + MP V P K+A L
Sbjct: 218 DVDF-----DLIKMQGRVGGSISDSKLINGVILDKDFSHPQMPKCVLPKEGSDGVKLAIL 272
Query: 241 DFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMAL 300
+ K + ++ ++ E +K++ E D KE I+ + KAGA+V++ G DD A
Sbjct: 273 TCPFEPPKPKTKHKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGADVVICQWGFDDEAN 332
Query: 301 KYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADM 337
++ AVR V +++ HIA +T +V F D+
Sbjct: 333 HLLLQNDLPAVRWVGGQELEHIAISTNGRIVPRFQDL 369
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 518
Score = 187 bits (475), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 117/343 (34%), Positives = 193/343 (56%), Gaps = 15/343 (4%)
Query: 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEH 72
+R +R N+ A +AVA+ +++SLGP G+DKM+ D GDVTITNDGATILK ++V H
Sbjct: 5 DRDKPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLH 64
Query: 73 PAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREAC 132
PAA++LVEL++ QD E GDGTTSVVI+A LL L++ IHPT I ++ A+ +
Sbjct: 65 PAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGI 124
Query: 133 KYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFANLVVEAVQAVKMTNQRGEVK 192
+ + + ++ VE +++L+N A TS++SK++ S + + V+AV +K+ +
Sbjct: 125 EILTD-MSRPVELSDRETLLNSAATSLNSKVVSQYSSLLSPMSVDAV--MKVIDPATATS 181
Query: 193 YPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLG 252
++ I I+K G + D + G L A G+ RV AKI + F L K +
Sbjct: 182 VDLRDIKIVKKLGGTIDDCELVEGLVLTQKVANSGIT-RVEKAKIGLIQFCLSAPKTDMD 240
Query: 253 VQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGI-----DDMALKYFVEAG 307
Q++V+D +++++ + E ++++ K G NV+L K I D+AL + +
Sbjct: 241 NQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMK 300
Query: 308 AIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGS 350
+ V+ + +ED+ I K G V+ + F + +LGS
Sbjct: 301 IMVVKDIEREDIEFICKTIGTKPVAHV------DQFTADMLGS 337
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|O Chain O, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|GG Chain g, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|OO Chain o, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|G Chain G, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|O Chain O, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|GG Chain g, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|OO Chain o, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 550
Score = 185 bits (470), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 115/324 (35%), Positives = 183/324 (56%), Gaps = 13/324 (4%)
Query: 24 NVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAE 83
N+ AC AV +K +LGP+G D ++V TI+NDGATILK+L+V HPAAK LV+++
Sbjct: 29 NINACVAVQEALKPTLGPLGSDILIVTSNQKTTISNDGATILKLLDVVHPAAKTLVDISR 88
Query: 84 LQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKV 143
QD EVGDGTTSV I+A EL+K A + I I+ GYR A+ A + +NE LAV +
Sbjct: 89 AQDAEVGDGTTSVTILAGELMKEAKPFLEEGISSHLIMKGYRKAVSLAVEKINE-LAVDI 147
Query: 144 ---EKLGKDSLVNCAKTSMSSKLIGGDSDFFANLVVEAVQAVKMTNQRGEVKYPIKGINI 200
+ G++ L CA+T+MSSKLI ++DFF + V+AV ++ R ++ + GI
Sbjct: 148 TSEKSSGRELLERCARTAMSSKLIHNNADFFVKMCVDAV----LSLDRNDLDDKLIGIK- 202
Query: 201 LKAHGKSARDSYFLNGYALN---AFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLV 257
K G + +S F+NG A ++ + P + KI L+ L+ + +V V
Sbjct: 203 -KIPGGAMEESLFINGVAFKKTFSYAGFEQQPKKFNNPKILSLNVELELKAEKDNAEVRV 261
Query: 258 TDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKE 317
+ + I E + E++ ++ + GAN++L+ I D+A ++F + RV +
Sbjct: 262 EHVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSKLPIGDLATQFFADRNIFCAGRVSAD 321
Query: 318 DMRHIAKATGATMVSTFADMEGEE 341
DM + +A G ++ ST +D++ E
Sbjct: 322 DMNRVIQAVGGSIQSTTSDIKPEH 345
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 182 bits (463), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 177/317 (55%), Gaps = 15/317 (4%)
Query: 24 NVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAE 83
N+ ACQ +A V+++LGP G+DK++VD G TI+NDGATILK+L+V HPAAK LV++A+
Sbjct: 16 NISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAK 75
Query: 84 LQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKV 143
QD EVGDGTTSV ++AAE LK+ V +HP II +R A + A + E +AV V
Sbjct: 76 SQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKE-IAVTV 134
Query: 144 EKLGK----DSLVNCAKTSMSSKLIGGDSDFFANLVVEAVQAVKMTNQRGEVKYPIKGIN 199
+K K L CA T++SSKLI FFA +VV+AV + Q +K I
Sbjct: 135 KKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMMLDDLLQ-------LKMIG 187
Query: 200 ILKAHGKSARDSYFLNGYALN---AFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVL 256
I K G + +S + G A ++ + P + IA L+ L+ + ++
Sbjct: 188 IKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELELKAEKDNAEIR 247
Query: 257 VTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRK 316
V + + I E ++ +++EK+ +GA V+L+ I D+A +YF + RV +
Sbjct: 248 VHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPE 307
Query: 317 EDMRHIAKATGATMVST 333
ED++ A G ++ ++
Sbjct: 308 EDLKRTMMACGGSIQTS 324
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 180 bits (457), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 118/332 (35%), Positives = 187/332 (56%), Gaps = 10/332 (3%)
Query: 14 RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHP 73
R G + ++MA +AVAN +K+SLGP GLDKM+VD GDVT+TNDGATIL M++V+H
Sbjct: 5 RLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQ 64
Query: 74 AAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACK 133
AK++VEL++ QD E+GDGTT VV++A LL+ A L+ IHP I GY A R A +
Sbjct: 65 IAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIE 124
Query: 134 YVNE-KLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFANLVVEAVQAVKMTNQRGEVK 192
++++ +V V+ + L+ AKT++ SK++ A + V AV V QR +V
Sbjct: 125 HLDKISDSVLVDMKNTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVA-DMQRRDVD 183
Query: 193 YPIKGINILKAHGKSA---RDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKM 249
+ ++K GK D+ + G ++ + MP +V AKIA L + K
Sbjct: 184 F-----ELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKP 238
Query: 250 QLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAI 309
+ ++ VT + + +++ E + +E I ++ + GAN+ + G DD A ++
Sbjct: 239 KTKHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQWGFDDEANHLLLQNDLP 298
Query: 310 AVRRVRKEDMRHIAKATGATMVSTFADMEGEE 341
AVR V ++ IA ATG +V F+++ E+
Sbjct: 299 AVRWVGGPEIELIAIATGGRIVPRFSELTAEK 330
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
pdb|3KTT|B Chain B, Atomic Model Of Bovine Tric Cct2(Beta) Subunit Derived
From A 4.0 Angstrom Cryo-Em Map
pdb|4A0O|A Chain A, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|B Chain B, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|C Chain C, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|D Chain D, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|E Chain E, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|F Chain F, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|G Chain G, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|H Chain H, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|I Chain I, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|J Chain J, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|K Chain K, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|L Chain L, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|M Chain M, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|N Chain N, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|O Chain O, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|P Chain P, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0V|A Chain A, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|B Chain B, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|C Chain C, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|D Chain D, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|E Chain E, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|F Chain F, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|G Chain G, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|H Chain H, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|I Chain I, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|J Chain J, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|K Chain K, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|L Chain L, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|M Chain M, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|N Chain N, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|O Chain O, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|P Chain P, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0W|A Chain A, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|B Chain B, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|C Chain C, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|D Chain D, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|E Chain E, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|F Chain F, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|G Chain G, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|H Chain H, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|I Chain I, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|J Chain J, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|K Chain K, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|L Chain L, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|M Chain M, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|N Chain N, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|O Chain O, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|P Chain P, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A13|A Chain A, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|B Chain B, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|C Chain C, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|D Chain D, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|E Chain E, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|F Chain F, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|G Chain G, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|H Chain H, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|I Chain I, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|J Chain J, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|K Chain K, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|L Chain L, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|M Chain M, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|N Chain N, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|O Chain O, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|P Chain P, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
Length = 513
Score = 166 bits (419), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 116/331 (35%), Positives = 183/331 (55%), Gaps = 21/331 (6%)
Query: 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVT--ITNDGATILKMLEV 70
+ + + R + + A+ ++VKS+LGP G+DK+L+ D + +TNDGATILK + V
Sbjct: 4 DEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGV 63
Query: 71 EHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMRE 130
++PAAKVLV+++ +QD EVGDGTTSV ++AAELL+ A L+ KIHP +II+G+ RE
Sbjct: 64 DNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGW----RE 119
Query: 131 ACKYVNEKLAVKVEKLGKDS------LVNCAKTSMSSKLIGGDSDFFANLVVEAVQAVKM 184
A K + L G D L+N A T++SSKL+ D F L VEAV +K
Sbjct: 120 ATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRLKG 179
Query: 185 TNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNL 244
+ ++ I+++K G S DSY G+ L+ + P R+ AKI + +
Sbjct: 180 SGN-------LEAIHVIKKLGGSLADSYLDEGFLLDK-KIGVNQPKRIENAKILIANTGM 231
Query: 245 QKTKMQL-GVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYF 303
K+++ G +V V ++ +I E + KE++E++LK G N + + I + + F
Sbjct: 232 DTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLF 291
Query: 304 VEAGAIAVRRVRKEDMRHIAKATGATMVSTF 334
AG +A+ + +A TG + STF
Sbjct: 292 GAAGVMAIEHADFVGVERLALVTGGEIASTF 322
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|K Chain K, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|CC Chain c, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|KK Chain k, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|C Chain C, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|K Chain K, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|CC Chain c, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|KK Chain k, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 590
Score = 164 bits (416), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 102/333 (30%), Positives = 180/333 (54%), Gaps = 8/333 (2%)
Query: 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEH 72
ER G+ + N+ A +AVA+++++ LGP + KML+D +G + +TNDG IL+ ++V H
Sbjct: 13 ERTTGRQAQISNITAAKAVADVIRTCLGPKAMLKMLLDPMGGLVLTNDGHAILREIDVAH 72
Query: 73 PAAKVLVELAELQDREVGDGTTSVVIVAAELLKR-ANDLVRNKIHPTSIISGYRLAMREA 131
PAAK ++EL+ QD EVGDGTT+V+I+A E+L + A L+ IHP II + A+ +A
Sbjct: 73 PAAKSMLELSRTQDEEVGDGTTTVIILAGEILAQCAPYLIEKNIHPVIIIQALKKALTDA 132
Query: 132 CKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFANLVVEAVQAVKM---TNQR 188
+ + ++++ V+ ++ + S+ +K + S+ L ++AV+ V+
Sbjct: 133 LEVI-KQVSKPVDVENDAAMKKLIQASIGTKYVIHWSEKMCELALDAVKTVRKDLGQTVE 191
Query: 189 GEVKYPI---KGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQ 245
GE + I + + + K G DS L G LN M + ++ LD L+
Sbjct: 192 GEPNFEIDIKRYVRVEKIPGGDVLDSRVLKGVLLNKDVVHPKMSRHIENPRVVLLDCPLE 251
Query: 246 KTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVE 305
K + + + + +I Q E + + E++L +++T KG+ D+A Y ++
Sbjct: 252 YKKGESQTNIEIEKEEDWNRILQIEEEQVQLMCEQILAVRPTLVITEKGVSDLAQHYLLK 311
Query: 306 AGAIAVRRVRKEDMRHIAKATGATMVSTFADME 338
G +RRV+K D IA+ TGAT+V+ D++
Sbjct: 312 GGCSVLRRVKKSDNNRIARVTGATIVNRVEDLK 344
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|J Chain J, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|BB Chain b, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|JJ Chain j, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|B Chain B, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|J Chain J, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|BB Chain b, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|JJ Chain j, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 527
Score = 164 bits (414), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 115/337 (34%), Positives = 188/337 (55%), Gaps = 18/337 (5%)
Query: 7 TLDILGER---QAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVT-ITNDGA 62
++ I G++ + ++ R + AV ++VKS+LGP G+DK+L + +TNDGA
Sbjct: 2 SVQIFGDQVTEERAENARLSAFVGAIAVGDLVKSTLGPKGMDKLLQSASSNTCMVTNDGA 61
Query: 63 TILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLV-RNKIHPTSII 121
TILK + +++PAAKVLV ++++QD EVGDGTTSV +++AELL+ A L+ ++KIHP +II
Sbjct: 62 TILKSIPLDNPAAKVLVNISKVQDDEVGDGTTSVTVLSAELLREAEKLIDQSKIHPQTII 121
Query: 122 SGYRLAMREACKYVNEKLAV---KVEKLGKDSLVNCAKTSMSSKLIGGDSDFFANLVVEA 178
GYRLA A + K AV + + ++ L++ AKT++SSK++ D D FA L A
Sbjct: 122 EGYRLASAAALDALT-KAAVDNSHDKTMFREDLIHIAKTTLSSKILSQDKDHFAELATNA 180
Query: 179 VQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIA 238
+ +K + ++ I I+K G DS+ G+ L A + P R+ AKI
Sbjct: 181 ILRLKGSTN-------LEHIQIIKILGGKLSDSFLDEGFIL-AKKFGNNQPKRIENAKIL 232
Query: 239 CLDFNLQKTKMQL-GVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDD 297
+ L K+++ G + V +L ++ + E + K +I K+ K G N + + I D
Sbjct: 233 IANTTLDTDKVKIFGTKFKVDSTAKLAQLEKAEREKMKNKIAKISKFGINTFINRQLIYD 292
Query: 298 MALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTF 334
+ F + G ++ E + +A TG +VSTF
Sbjct: 293 YPEQLFTDLGINSIEHADFEGVERLALVTGGEVVSTF 329
>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|L Chain L, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|DD Chain d, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|LL Chain l, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|D Chain D, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|L Chain L, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|DD Chain d, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|LL Chain l, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 528
Score = 163 bits (412), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 114/344 (33%), Positives = 189/344 (54%), Gaps = 17/344 (4%)
Query: 14 RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHP 73
++ Q+VR N++A ++VA+ +++SLGP G+DKM+ G++ I+NDG TILK + + HP
Sbjct: 14 KEKPQEVRKANIIAARSVADAIRTSLGPKGMDKMIKTSRGEIIISNDGHTILKQMAILHP 73
Query: 74 AAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACK 133
A++LVE++ QD E GDGTTSVVI+ LL A L+ IHPT I ++ A + +
Sbjct: 74 VARMLVEVSAAQDSEAGDGTTSVVILTGALLGAAERLLNKGIHPTIIADSFQSAAKRSVD 133
Query: 134 YVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFANLVVEAVQAVKMTNQRGEVKY 193
+ E + KV ++ LV A TS+SSK++ S F A L V++V + N +
Sbjct: 134 ILLE-MCHKVSLSDREQLVRAASTSLSSKIVSQYSSFLAPLAVDSVLKISDENSKN---V 189
Query: 194 PIKGINILKAHGKSARDSYFLNGYAL--NAFRAAQGMPLRVAPAKIACLDFNLQKTKMQL 251
+ I ++K G + D+ ++G L A ++A G P R AKI + F + K
Sbjct: 190 DLNDIRLVKKVGGTIDDTEMIDGVVLTQTAIKSAGG-PTRKEKAKIGLIQFQISPPKPDT 248
Query: 252 GVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGI-----DDMALKYFVEA 306
++V D R+++KI + E +K+ KA NV+L K I +D+AL + +
Sbjct: 249 ENNIIVNDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDLALHFLSKL 308
Query: 307 GAIAVRRVRKEDMRHIAKATGATMVSTFADME--GEETFDSSLL 348
+ V+ + +E++ ++K G + AD+E E+ DS+ L
Sbjct: 309 NIMVVKDIEREEIEFLSKGLGCKPI---ADIELFTEDRLDSADL 349
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 517
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/326 (27%), Positives = 172/326 (52%), Gaps = 21/326 (6%)
Query: 24 NVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAE 83
N+ A + + ++++++LGP G KMLV GD+ +T DG +L ++++HP A ++ ++A
Sbjct: 15 NISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVAT 74
Query: 84 LQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKV 143
QD GDGTTS V++ ELLK+A+ + +HP I G+ A +A +++ + VKV
Sbjct: 75 AQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQ---VKV 131
Query: 144 EK-LGKDSLVNCAKTSMSSKLIGGDSDFFANLVVEAVQAVKMTNQRGEVKYPIK--GINI 200
K + +++L++ A+TS+ +K+ +D VV+++ A+K ++ PI + I
Sbjct: 132 SKEMDRETLIDVARTSLRTKVHAELADVLTEAVVDSILAIKKQDE------PIDLFMVEI 185
Query: 201 LKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDP 260
++ KS D+ + G L+ M RV A I + +L+ K ++
Sbjct: 186 MEMKHKSETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEVNSGFFYKSA 245
Query: 261 RELEKIRQREADMTKERIEKLLKAGAN---------VILTTKGIDDMALKYFVEAGAIAV 311
E EK+ + E ++R++K+++ V++ KGID +L + G IA+
Sbjct: 246 EEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLDALAKEGIIAL 305
Query: 312 RRVRKEDMRHIAKATGATMVSTFADM 337
RR ++ +M + A G +++ D+
Sbjct: 306 RRAKRRNMERLTLACGGIALNSLDDL 331
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|N Chain N, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|FF Chain f, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|NN Chain n, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|F Chain F, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|N Chain N, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|FF Chain f, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|NN Chain n, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 546
Score = 130 bits (328), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 84/328 (25%), Positives = 168/328 (51%), Gaps = 20/328 (6%)
Query: 24 NVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAE 83
NV + + + ++++++LGP G KMLVD G++ +T DG +L ++++ P A ++ A
Sbjct: 22 NVTSAEGLQSVLETNLGPKGTLKMLVDGAGNIKLTKDGKVLLTEMQIQSPTAVLIARAAA 81
Query: 84 LQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKV 143
QD GDGTT+VV + ELL++A+ ++ +HP I G+ +A +E+ K+++E K+
Sbjct: 82 AQDEITGDGTTTVVCLVGELLRQAHRFIQEGVHPRIITDGFEIARKESMKFLDE---FKI 138
Query: 144 EKLG----KDSLVNCAKTSMSSKLIGGDSDFFANLVVEAVQAVKMTNQRGEVKYPIKGIN 199
K ++ L+ A++S+ +K+ ++ +V +AV +V + +
Sbjct: 139 SKTNLSNDREFLLQVARSSLLTKVDADLTEVLTPIVTDAVLSVYDAQAD---NLDLHMVE 195
Query: 200 ILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTD 259
I++ S +D+ F+ G L+ MP RV A + L+ +L+ K ++ +
Sbjct: 196 IMQMQHLSPKDTTFIKGLVLDHGGRHPDMPTRVKNAYVLILNVSLEYEKTEVNSGFFYSS 255
Query: 260 PRELEKIRQREADMTKERIEKLLK-----AGAN-----VILTTKGIDDMALKYFVEAGAI 309
+ +K+ E +++K++ G + VI+ KGID M+L F + +
Sbjct: 256 ADQRDKLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGIDPMSLDVFAKHNIL 315
Query: 310 AVRRVRKEDMRHIAKATGATMVSTFADM 337
A+RR ++ +M + TG ++ D+
Sbjct: 316 ALRRAKRRNMERLQLVTGGEAQNSVEDL 343
>pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 512
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 161/308 (52%), Gaps = 8/308 (2%)
Query: 23 QNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELA 82
+N+ AC+ +A +++ GP G++KM+++ + + +TND ATIL+ LEV+HPAAK++V +
Sbjct: 15 RNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMAS 74
Query: 83 ELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVK 142
+Q++EVGDGT V++ A LL+ A +L+R + + +I GY +A ++A + + + +
Sbjct: 75 HMQEQEVGDGTNFVLVFAGALLELAEELLRLGLSVSEVIEGYEIACKKAHEILPDLVCCS 134
Query: 143 VEKLGK-DSLVNCAKTSMSSKLIGGDSDFFANLVVEAVQAVKMTNQRGEVKYPIKGINIL 201
+ L D + + TS+ SK G + F A L+ +A V + G + + I +
Sbjct: 135 AKNLRDVDEVSSLLHTSVMSKQYGNEV-FLAKLIAQA--CVSIFPDSGH--FNVDNIRVC 189
Query: 202 KAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPR 261
K G S L+G + +G V AKIA + VL+
Sbjct: 190 KILGSGVHSSSVLHGMVFK--KETEGDVTSVKDAKIAVYSCPFDGMITETKGTVLIKSAE 247
Query: 262 ELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRH 321
EL + E ++ +++ + GANV++T + DMAL Y + + VR K D+R
Sbjct: 248 ELMNFSKGEENLMDAQVKAIADTGANVVVTGGRVADMALHYANKYNIMLVRLNSKWDLRR 307
Query: 322 IAKATGAT 329
+ K GAT
Sbjct: 308 LCKTVGAT 315
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|P Chain P, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|HH Chain h, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|PP Chain p, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|H Chain H, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|P Chain P, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|HH Chain h, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|PP Chain p, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 568
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 92/325 (28%), Positives = 163/325 (50%), Gaps = 9/325 (2%)
Query: 23 QNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELA 82
+++ A + + + +S+GP G +K++V+ +G + ITND AT+L+ L++ HPA KVLV
Sbjct: 30 KSIAAIRELHQMCLTSMGPCGRNKIIVNHLGKIIITNDAATMLRELDIVHPAVKVLVMAT 89
Query: 83 ELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVK 142
E Q ++GDGT V+I+A ELL + L+ + II GY +A + K ++E + +
Sbjct: 90 EQQKIDMGDGTNLVMILAGELLNVSEKLISMGLSAVEIIQGYNMARKFTLKELDEMVVGE 149
Query: 143 V-EKLGKDSLVNCAKTSMSSKLIGGDSDFFANLVVEAVQAV-KMTNQRGEVKY-PIKGIN 199
+ +K K+ L+ K +SSK G + D + LV EAV V + Q GE+ Y + I
Sbjct: 150 ITDKNDKNELLKMIKPVISSKKYGSE-DILSELVSEAVSHVLPVAQQAGEIPYFNVDSIR 208
Query: 200 ILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAP---AKIACLDFNLQKTKMQLGVQVL 256
++K G S +S + G N R +G ++ K+A L + VL
Sbjct: 209 VVKIMGGSLSNSTVIKGMVFN--REPEGHVKSLSEDKKHKVAVFTCPLDIANTETKGTVL 266
Query: 257 VTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRK 316
+ + +E+ + E ++++ G I+ G+ ++AL Y G + ++ K
Sbjct: 267 LHNAQEMLDFSKGEEKQIDAMMKEIADMGVECIVAGAGVGELALHYLNRYGILVLKVPSK 326
Query: 317 EDMRHIAKATGATMVSTFADMEGEE 341
++R + + GAT + EE
Sbjct: 327 FELRRLCRVCGATPLPRLGAPTPEE 351
>pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome
Length = 159
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 75/121 (61%)
Query: 214 LNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADM 273
+NG ++ + GMP V AKIA LD L+ K + + + DP ++K +E +M
Sbjct: 1 MNGIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENM 60
Query: 274 TKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVST 333
+E ++K+ GANV++T KGIDDMA Y AG AVRRV+K DM +AKATGA++VST
Sbjct: 61 LREMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVST 120
Query: 334 F 334
Sbjct: 121 I 121
>pdb|1ASS|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma
Acidophilum
pdb|1ASX|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma
Acidophilum
Length = 159
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 77/124 (62%)
Query: 214 LNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADM 273
++G ++ + MP V AKIA +D L+ K ++ +V ++DP +++ +E +
Sbjct: 1 MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNT 60
Query: 274 TKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVST 333
K+ +EK+ K+GANV+L KGIDD+A Y + G AVRRV+K DM +AKATGA +V+
Sbjct: 61 FKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTD 120
Query: 334 FADM 337
D+
Sbjct: 121 LDDL 124
>pdb|1GML|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|B Chain B, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|C Chain C, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|D Chain D, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GN1|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|B Chain B, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|C Chain C, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|D Chain D, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|E Chain E, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|F Chain F, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|G Chain G, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|H Chain H, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
Length = 178
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 62/123 (50%)
Query: 210 DSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQR 269
DS L G +N M + +I LD +L+ K + + +T + +I Q
Sbjct: 3 DSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQM 62
Query: 270 EADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGAT 329
E + + E +++ +V++T KGI D+A Y + A A+RRVRK D IA+A GA
Sbjct: 63 EEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGAR 122
Query: 330 MVS 332
+VS
Sbjct: 123 IVS 125
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium
Tuberculosis At 2.8a
pdb|3RTK|B Chain B, Crystal Structure Of Cpn60.2 From Mycobacterium
Tuberculosis At 2.8a
Length = 546
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 79/162 (48%), Gaps = 20/162 (12%)
Query: 28 CQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVEL----AE 83
A+A+ VK +LGP G + +L G TITNDG +I K +E+E P K+ EL A+
Sbjct: 19 LNALADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAK 78
Query: 84 LQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKL---A 140
D GDGTT+ ++A L++ V +P G + + +A + V E L A
Sbjct: 79 KTDDVAGDGTTTATVLAQALVREGLRNVAAGANPL----GLKRGIEKAVEKVTETLLKGA 134
Query: 141 VKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFANLVVEAVQAV 182
+VE K+ + A S + IG +L+ EA+ V
Sbjct: 135 KEVET--KEQIAATAAISAGDQSIG-------DLIAEAMDKV 167
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|B Chain B, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|C Chain C, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|D Chain D, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|E Chain E, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|F Chain F, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|G Chain G, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|H Chain H, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|I Chain I, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|J Chain J, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|K Chain K, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|L Chain L, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|M Chain M, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|N Chain N, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|AA Chain a, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|BB Chain b, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|CC Chain c, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|DD Chain d, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|EE Chain e, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|FF Chain f, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|GG Chain g, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|HH Chain h, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|II Chain i, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|JJ Chain j, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|KK Chain k, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|LL Chain l, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|MM Chain m, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|NN Chain n, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
Length = 543
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 64/121 (52%), Gaps = 5/121 (4%)
Query: 28 CQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLE----VEHPAAKVLVELAE 83
AVAN VK +LGP G + +L G TIT DG T+ K +E +E+ A++L E+A
Sbjct: 19 VNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVELEDHLENIGAQLLKEVAS 78
Query: 84 LQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKV 143
+ GDGTT+ ++A +++ V +P ++ G A+ A + + LA+ V
Sbjct: 79 KTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEKAVEAAVEKIK-ALAIPV 137
Query: 144 E 144
E
Sbjct: 138 E 138
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|B Chain B, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|C Chain C, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|D Chain D, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|E Chain E, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|F Chain F, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|G Chain G, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|H Chain H, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|I Chain I, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|J Chain J, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|K Chain K, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|L Chain L, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|M Chain M, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|N Chain N, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|O Chain O, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|P Chain P, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Q Chain Q, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|R Chain R, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|S Chain S, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|T Chain T, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|U Chain U, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|V Chain V, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|W Chain W, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|X Chain X, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Y Chain Y, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Z Chain Z, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|1 Chain 1, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|2 Chain 2, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
Length = 547
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 4/121 (3%)
Query: 17 GQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEV----EH 72
G D R + + +A+ VK +LGP G + +L G TIT DG ++ + +E+ E+
Sbjct: 8 GNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFEN 67
Query: 73 PAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREAC 132
A+++ E+A + GDGTT+ ++A ++ V ++P + G A+ A
Sbjct: 68 MGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAV 127
Query: 133 K 133
+
Sbjct: 128 E 128
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|B Chain B, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|C Chain C, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|D Chain D, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|E Chain E, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|F Chain F, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|G Chain G, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|H Chain H, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|I Chain I, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|J Chain J, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|K Chain K, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|L Chain L, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|M Chain M, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|N Chain N, Crystal Structure Of The Chaperonin Groel-E461k
Length = 548
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 4/121 (3%)
Query: 17 GQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEV----EH 72
G D R + + +A+ VK +LGP G + +L G TIT DG ++ + +E+ E+
Sbjct: 9 GNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFEN 68
Query: 73 PAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREAC 132
A+++ E+A + GDGTT+ ++A ++ V ++P + G A+ A
Sbjct: 69 MGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAV 128
Query: 133 K 133
+
Sbjct: 129 E 129
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes
pdb|1PCQ|B Chain B, Crystal Structure Of Groel-Groes
pdb|1PCQ|C Chain C, Crystal Structure Of Groel-Groes
pdb|1PCQ|D Chain D, Crystal Structure Of Groel-Groes
pdb|1PCQ|E Chain E, Crystal Structure Of Groel-Groes
pdb|1PCQ|F Chain F, Crystal Structure Of Groel-Groes
pdb|1PCQ|G Chain G, Crystal Structure Of Groel-Groes
pdb|1PCQ|H Chain H, Crystal Structure Of Groel-Groes
pdb|1PCQ|I Chain I, Crystal Structure Of Groel-Groes
pdb|1PCQ|J Chain J, Crystal Structure Of Groel-Groes
pdb|1PCQ|K Chain K, Crystal Structure Of Groel-Groes
pdb|1PCQ|L Chain L, Crystal Structure Of Groel-Groes
pdb|1PCQ|M Chain M, Crystal Structure Of Groel-Groes
pdb|1PCQ|N Chain N, Crystal Structure Of Groel-Groes
pdb|1PF9|A Chain A, Groel-Groes-Adp
pdb|1PF9|B Chain B, Groel-Groes-Adp
pdb|1PF9|C Chain C, Groel-Groes-Adp
pdb|1PF9|D Chain D, Groel-Groes-Adp
pdb|1PF9|E Chain E, Groel-Groes-Adp
pdb|1PF9|F Chain F, Groel-Groes-Adp
pdb|1PF9|G Chain G, Groel-Groes-Adp
pdb|1PF9|H Chain H, Groel-Groes-Adp
pdb|1PF9|I Chain I, Groel-Groes-Adp
pdb|1PF9|J Chain J, Groel-Groes-Adp
pdb|1PF9|K Chain K, Groel-Groes-Adp
pdb|1PF9|L Chain L, Groel-Groes-Adp
pdb|1PF9|M Chain M, Groel-Groes-Adp
pdb|1PF9|N Chain N, Groel-Groes-Adp
pdb|1SVT|A Chain A, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|B Chain B, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|C Chain C, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|D Chain D, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|E Chain E, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|F Chain F, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|G Chain G, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|H Chain H, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|I Chain I, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|J Chain J, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|K Chain K, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|L Chain L, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|M Chain M, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|N Chain N, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SX4|A Chain A, Groel-Groes-Adp7
pdb|1SX4|B Chain B, Groel-Groes-Adp7
pdb|1SX4|C Chain C, Groel-Groes-Adp7
pdb|1SX4|D Chain D, Groel-Groes-Adp7
pdb|1SX4|E Chain E, Groel-Groes-Adp7
pdb|1SX4|F Chain F, Groel-Groes-Adp7
pdb|1SX4|G Chain G, Groel-Groes-Adp7
pdb|1SX4|H Chain H, Groel-Groes-Adp7
pdb|1SX4|I Chain I, Groel-Groes-Adp7
pdb|1SX4|J Chain J, Groel-Groes-Adp7
pdb|1SX4|K Chain K, Groel-Groes-Adp7
pdb|1SX4|L Chain L, Groel-Groes-Adp7
pdb|1SX4|M Chain M, Groel-Groes-Adp7
pdb|1SX4|N Chain N, Groel-Groes-Adp7
pdb|2YNJ|A Chain A, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|B Chain B, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|C Chain C, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|D Chain D, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|E Chain E, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|F Chain F, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|G Chain G, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|H Chain H, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|I Chain I, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|J Chain J, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|K Chain K, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|L Chain L, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|M Chain M, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|N Chain N, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
Length = 524
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 4/121 (3%)
Query: 17 GQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEV----EH 72
G D R + + +A+ VK +LGP G + +L G TIT DG ++ + +E+ E+
Sbjct: 8 GNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFEN 67
Query: 73 PAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREAC 132
A+++ E+A + GDGTT+ ++A ++ V ++P + G A+ A
Sbjct: 68 MGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAV 127
Query: 133 K 133
+
Sbjct: 128 E 128
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|B Chain B, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|C Chain C, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|D Chain D, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|E Chain E, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|F Chain F, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|G Chain G, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|H Chain H, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|I Chain I, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|J Chain J, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|K Chain K, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|L Chain L, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|M Chain M, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|N Chain N, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
Length = 526
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 4/121 (3%)
Query: 17 GQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEV----EH 72
G D R + + +A+ VK +LGP G + +L G TIT DG ++ + +E+ E+
Sbjct: 8 GNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFEN 67
Query: 73 PAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREAC 132
A+++ E+A + GDGTT+ ++A ++ V ++P + G A+ A
Sbjct: 68 MGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAV 127
Query: 133 K 133
+
Sbjct: 128 E 128
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
Length = 548
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 4/121 (3%)
Query: 17 GQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEV----EH 72
G D R + + +A+ VK +LGP G + +L G TIT DG ++ + +E+ E+
Sbjct: 9 GNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFEN 68
Query: 73 PAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREAC 132
A+++ E+A + GDGTT+ ++A ++ V ++P + G A+ A
Sbjct: 69 MGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAV 128
Query: 133 K 133
+
Sbjct: 129 E 129
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|B Chain B, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|C Chain C, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|D Chain D, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|E Chain E, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|F Chain F, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|G Chain G, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|H Chain H, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|I Chain I, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|J Chain J, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|K Chain K, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|L Chain L, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|M Chain M, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|N Chain N, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
Length = 524
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 4/121 (3%)
Query: 17 GQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEV----EH 72
G D R + + +A+ VK +LGP G + +L G TIT DG ++ + +E+ E+
Sbjct: 8 GNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFEN 67
Query: 73 PAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREAC 132
A+++ E+A + GDGTT+ ++A ++ V ++P + G A+ A
Sbjct: 68 MGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAV 127
Query: 133 K 133
+
Sbjct: 128 E 128
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|B Chain B, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|C Chain C, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|D Chain D, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|E Chain E, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|F Chain F, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|G Chain G, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|H Chain H, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|I Chain I, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|J Chain J, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|K Chain K, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|L Chain L, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|M Chain M, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|N Chain N, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1GRU|A Chain A, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|B Chain B, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|C Chain C, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|D Chain D, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|E Chain E, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|F Chain F, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|G Chain G, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|H Chain H, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|I Chain I, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|J Chain J, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|K Chain K, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|L Chain L, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|M Chain M, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|N Chain N, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1MNF|A Chain A, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|B Chain B, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|C Chain C, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|D Chain D, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|E Chain E, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|F Chain F, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|G Chain G, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|H Chain H, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|I Chain I, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|J Chain J, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|K Chain K, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|L Chain L, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|M Chain M, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|N Chain N, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1XCK|A Chain A, Crystal Structure Of Apo Groel
pdb|1XCK|B Chain B, Crystal Structure Of Apo Groel
pdb|1XCK|C Chain C, Crystal Structure Of Apo Groel
pdb|1XCK|D Chain D, Crystal Structure Of Apo Groel
pdb|1XCK|E Chain E, Crystal Structure Of Apo Groel
pdb|1XCK|F Chain F, Crystal Structure Of Apo Groel
pdb|1XCK|G Chain G, Crystal Structure Of Apo Groel
pdb|1XCK|H Chain H, Crystal Structure Of Apo Groel
pdb|1XCK|I Chain I, Crystal Structure Of Apo Groel
pdb|1XCK|J Chain J, Crystal Structure Of Apo Groel
pdb|1XCK|K Chain K, Crystal Structure Of Apo Groel
pdb|1XCK|L Chain L, Crystal Structure Of Apo Groel
pdb|1XCK|M Chain M, Crystal Structure Of Apo Groel
pdb|1XCK|N Chain N, Crystal Structure Of Apo Groel
pdb|2C7C|A Chain A, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|B Chain B, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|C Chain C, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|D Chain D, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|E Chain E, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|F Chain F, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|G Chain G, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|H Chain H, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|I Chain I, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|J Chain J, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|K Chain K, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|L Chain L, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|M Chain M, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|N Chain N, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7D|A Chain A, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|B Chain B, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|C Chain C, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|D Chain D, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|E Chain E, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|F Chain F, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|G Chain G, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|H Chain H, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|I Chain I, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|J Chain J, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|K Chain K, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|L Chain L, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|M Chain M, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|N Chain N, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2CGT|A Chain A, Groel-Adp-Gp31 Complex
pdb|2CGT|B Chain B, Groel-Adp-Gp31 Complex
pdb|2CGT|C Chain C, Groel-Adp-Gp31 Complex
pdb|2CGT|D Chain D, Groel-Adp-Gp31 Complex
pdb|2CGT|E Chain E, Groel-Adp-Gp31 Complex
pdb|2CGT|F Chain F, Groel-Adp-Gp31 Complex
pdb|2CGT|G Chain G, Groel-Adp-Gp31 Complex
pdb|2CGT|H Chain H, Groel-Adp-Gp31 Complex
pdb|2CGT|I Chain I, Groel-Adp-Gp31 Complex
pdb|2CGT|J Chain J, Groel-Adp-Gp31 Complex
pdb|2CGT|K Chain K, Groel-Adp-Gp31 Complex
pdb|2CGT|L Chain L, Groel-Adp-Gp31 Complex
pdb|2CGT|M Chain M, Groel-Adp-Gp31 Complex
pdb|2CGT|N Chain N, Groel-Adp-Gp31 Complex
pdb|2NWC|A Chain A, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|B Chain B, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|C Chain C, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|D Chain D, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|E Chain E, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|F Chain F, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|G Chain G, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|H Chain H, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|I Chain I, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|J Chain J, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|K Chain K, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|L Chain L, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|M Chain M, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|N Chain N, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|3E76|A Chain A, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|B Chain B, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|C Chain C, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|D Chain D, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|E Chain E, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|F Chain F, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|G Chain G, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|H Chain H, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|I Chain I, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|J Chain J, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|K Chain K, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|L Chain L, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|M Chain M, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|N Chain N, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
Length = 547
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 4/121 (3%)
Query: 17 GQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEV----EH 72
G D R + + +A+ VK +LGP G + +L G TIT DG ++ + +E+ E+
Sbjct: 8 GNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFEN 67
Query: 73 PAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREAC 132
A+++ E+A + GDGTT+ ++A ++ V ++P + G A+ A
Sbjct: 68 MGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAV 127
Query: 133 K 133
+
Sbjct: 128 E 128
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|B Chain B, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|C Chain C, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|D Chain D, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|E Chain E, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|F Chain F, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|G Chain G, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
Length = 545
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 66/130 (50%), Gaps = 11/130 (8%)
Query: 19 DVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEV----EHPA 74
D R + + +A+ VK +LGP G + ++ G IT DG ++ K +E+ E+
Sbjct: 11 DARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMG 70
Query: 75 AKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRL-------A 127
A+++ E+A + E GDGTT+ ++A +++ V ++P + G + A
Sbjct: 71 AQMVREVASRTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVVEA 130
Query: 128 MREACKYVNE 137
++ A + VN+
Sbjct: 131 IKSAARPVND 140
>pdb|1SS8|A Chain A, Groel
pdb|1SS8|B Chain B, Groel
pdb|1SS8|C Chain C, Groel
pdb|1SS8|D Chain D, Groel
pdb|1SS8|E Chain E, Groel
pdb|1SS8|F Chain F, Groel
pdb|1SS8|G Chain G, Groel
Length = 524
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 83/173 (47%), Gaps = 19/173 (10%)
Query: 17 GQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEV----EH 72
G D + + +A+ VK +LGP G + +L G TIT DG ++ + +E+ E+
Sbjct: 8 GNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFEN 67
Query: 73 PAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREAC 132
A+++ E+A + GDGTT+ ++A ++ V ++P + G
Sbjct: 68 MGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRG--------- 118
Query: 133 KYVNEKLAVKVEKLGKDSLVNCAKTSMSSKL--IGGDSD-FFANLVVEAVQAV 182
+++ + V VE+L K V C+ + +++ I +SD L+ EA+ V
Sbjct: 119 --IDKAVTVAVEEL-KALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKV 168
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|B Chain B, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|C Chain C, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|D Chain D, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|E Chain E, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|F Chain F, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|G Chain G, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
Length = 548
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 83/173 (47%), Gaps = 19/173 (10%)
Query: 17 GQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEV----EH 72
G D + + +A+ VK +LGP G + +L G TIT DG ++ + +E+ E+
Sbjct: 9 GNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFEN 68
Query: 73 PAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREAC 132
A+++ E+A + GDGTT+ ++A ++ V ++P + G
Sbjct: 69 MGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRG--------- 119
Query: 133 KYVNEKLAVKVEKLGKDSLVNCAKTSMSSKL--IGGDSD-FFANLVVEAVQAV 182
+++ + V VE+L K V C+ + +++ I +SD L+ EA+ V
Sbjct: 120 --IDKAVTVAVEEL-KALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKV 169
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14
pdb|1SX3|B Chain B, Groel14-(Atpgammas)14
pdb|1SX3|C Chain C, Groel14-(Atpgammas)14
pdb|1SX3|D Chain D, Groel14-(Atpgammas)14
pdb|1SX3|E Chain E, Groel14-(Atpgammas)14
pdb|1SX3|F Chain F, Groel14-(Atpgammas)14
pdb|1SX3|G Chain G, Groel14-(Atpgammas)14
pdb|1SX3|H Chain H, Groel14-(Atpgammas)14
pdb|1SX3|I Chain I, Groel14-(Atpgammas)14
pdb|1SX3|J Chain J, Groel14-(Atpgammas)14
pdb|1SX3|K Chain K, Groel14-(Atpgammas)14
pdb|1SX3|L Chain L, Groel14-(Atpgammas)14
pdb|1SX3|M Chain M, Groel14-(Atpgammas)14
pdb|1SX3|N Chain N, Groel14-(Atpgammas)14
Length = 525
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 83/173 (47%), Gaps = 19/173 (10%)
Query: 17 GQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEV----EH 72
G D + + +A+ VK +LGP G + +L G TIT DG ++ + +E+ E+
Sbjct: 8 GNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFEN 67
Query: 73 PAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREAC 132
A+++ E+A + GDGTT+ ++A ++ V ++P + G
Sbjct: 68 MGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRG--------- 118
Query: 133 KYVNEKLAVKVEKLGKDSLVNCAKTSMSSKL--IGGDSD-FFANLVVEAVQAV 182
+++ + V VE+L K V C+ + +++ I +SD L+ EA+ V
Sbjct: 119 --IDKAVTVAVEEL-KALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKV 168
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|B Chain B, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|C Chain C, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|D Chain D, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|E Chain E, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|F Chain F, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|G Chain G, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|H Chain H, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|I Chain I, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|J Chain J, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|K Chain K, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|L Chain L, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|M Chain M, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|N Chain N, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
Length = 526
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 4/111 (3%)
Query: 17 GQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEV----EH 72
G D + + +A+ VK +LGP G + +L G TIT DG ++ + +E+ E+
Sbjct: 8 GNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFEN 67
Query: 73 PAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISG 123
A+++ E+A + GDGTT+ ++A ++ V ++P + G
Sbjct: 68 MGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRG 118
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|B Chain B, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|C Chain C, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|D Chain D, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|E Chain E, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|F Chain F, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|G Chain G, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|H Chain H, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|I Chain I, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|J Chain J, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|K Chain K, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|L Chain L, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|M Chain M, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|N Chain N, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
Length = 547
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 83/173 (47%), Gaps = 19/173 (10%)
Query: 17 GQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEV----EH 72
G D + + +A+ VK +LGP G + +L G TIT DG ++ + +E+ E+
Sbjct: 8 GNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFEN 67
Query: 73 PAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREAC 132
A+++ E+A + GDGTT+ ++A ++ V ++P + G
Sbjct: 68 MGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRG--------- 118
Query: 133 KYVNEKLAVKVEKLGKDSLVNCAKTSMSSKL--IGGDSD-FFANLVVEAVQAV 182
+++ + V VE+L K V C+ + +++ I +SD L+ EA+ V
Sbjct: 119 --IDKAVTVAVEEL-KALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKV 168
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|B Chain B, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|C Chain C, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|D Chain D, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|E Chain E, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|F Chain F, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|G Chain G, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|H Chain H, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|I Chain I, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|J Chain J, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|K Chain K, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|L Chain L, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|M Chain M, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|N Chain N, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|2C7E|A Chain A, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|B Chain B, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|C Chain C, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|D Chain D, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|E Chain E, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|F Chain F, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|G Chain G, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|H Chain H, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|I Chain I, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|J Chain J, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|K Chain K, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|L Chain L, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|M Chain M, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|N Chain N, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
Length = 547
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 83/173 (47%), Gaps = 19/173 (10%)
Query: 17 GQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEV----EH 72
G D + + +A+ VK +LGP G + +L G TIT DG ++ + +E+ E+
Sbjct: 8 GNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFEN 67
Query: 73 PAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREAC 132
A+++ E+A + GDGTT+ ++A ++ V ++P + G
Sbjct: 68 MGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRG--------- 118
Query: 133 KYVNEKLAVKVEKLGKDSLVNCAKTSMSSKL--IGGDSD-FFANLVVEAVQAV 182
+++ + V VE+L K V C+ + +++ I +SD L+ EA+ V
Sbjct: 119 --IDKAVTVAVEEL-KALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKV 168
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|B Chain B, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|C Chain C, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|D Chain D, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|E Chain E, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|F Chain F, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|G Chain G, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
Length = 547
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 83/173 (47%), Gaps = 19/173 (10%)
Query: 17 GQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEV----EH 72
G D + + +A+ VK +LGP G + +L G TIT DG ++ + +E+ E+
Sbjct: 8 GNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFEN 67
Query: 73 PAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREAC 132
A+++ E+A + GDGTT+ ++A ++ V ++P + G
Sbjct: 68 MGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRG--------- 118
Query: 133 KYVNEKLAVKVEKLGKDSLVNCAKTSMSSKL--IGGDSD-FFANLVVEAVQAV 182
+++ + V VE+L K V C+ + +++ I +SD L+ EA+ V
Sbjct: 119 --IDKAVTVAVEEL-KALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKV 168
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2
pdb|1SJP|B Chain B, Mycobacterium Tuberculosis Chaperonin60.2
Length = 504
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 65/137 (47%), Gaps = 20/137 (14%)
Query: 53 GDVTITNDGATILKMLEVEHPAAKVLVEL----AELQDREVGDGTTSVVIVAAELLKRAN 108
G TITNDG +I K +E+E P K+ EL A+ D GDGTT+ ++A L++
Sbjct: 2 GAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGL 61
Query: 109 DLVRNKIHPTSIISGYRLAMREACKYVNEKL---AVKVEKLGKDSLVNCAKTSMSSKLIG 165
V +P G + + +A + V E L A +VE K+ + A S + IG
Sbjct: 62 RNVAAGANPL----GLKRGIEKAVEKVTETLLKGAKEVET--KEQIAATAAISAGDQSIG 115
Query: 166 GDSDFFANLVVEAVQAV 182
+L+ EA+ V
Sbjct: 116 -------DLIAEAMDKV 125
>pdb|2IV2|X Chain X, Reinterpretation Of Reduced Form Of Formate Dehydrogenase
H From E. Coli
pdb|1AA6|A Chain A, Reduced Form Of Formate Dehydrogenase H From E. Coli
pdb|1FDI|A Chain A, Oxidized Form Of Formate Dehydrogenase H From E. Coli
Complexed With The Inhibitor Nitrite
pdb|1FDO|A Chain A, Oxidized Form Of Formate Dehydrogenase H From E. Coli
Length = 715
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 72/175 (41%), Gaps = 36/175 (20%)
Query: 126 LAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFANLVVEAVQAVKMT 185
++ EA YV E+L+ EK G D++ +T+ SS+ G ++++ AV
Sbjct: 78 VSWDEALNYVAERLSAIKEKYGPDAI----QTTGSSRGTGNETNYVMQKFARAVIGTNNV 133
Query: 186 NQRGEVKYPIKGINILKAHGKSA----------RDSYFLNGYALNAFRAAQGMPLRVAPA 235
+ V + + ++ G A D F+ GY A P+
Sbjct: 134 DCCARVXHGPSVAGLHQSVGNGAMSNAINEIDNTDLVFVFGY-----NPADSHPI----- 183
Query: 236 KIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVIL 290
+A N ++ G +++V DPR++E R ADM LK G+N+ L
Sbjct: 184 -VANHVINAKRN----GAKIIVCDPRKIETARI--ADM-----HIALKNGSNIAL 226
>pdb|1TVI|A Chain A, Solution Structure Of Tm1509 From Thermotoga Maritima:
Vt1, A Nesgc Target Protein
Length = 172
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 81 LAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIIS 122
L E+ +E+GD +V++V+ + +K N R + PT +++
Sbjct: 43 LEEIVKKEIGDVHVNVILVSEDEIKELNQQFRGQDRPTDVLT 84
>pdb|2MAT|A Chain A, E.Coli Methionine Aminopeptidase At 1.9 Angstrom
Resolution
pdb|1YVM|A Chain A, E. Coli Methionine Aminopeptidase In Complex With
Thiabendazole
pdb|4A6W|A Chain A, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
Length = 264
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 9/102 (8%)
Query: 74 AAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACK 133
A ++ E+ E+ + V G ++ EL + ND + N+ H S GY + C
Sbjct: 17 AGRLAAEVLEMIEPYVKPGVST-----GELDRICNDYIVNEQHAVSACLGYHGYPKSVCI 71
Query: 134 YVNEKLAVKVE---KLGKDS-LVNCAKTSMSSKLIGGDSDFF 171
+NE + + KL KD +VN T + G S F
Sbjct: 72 SINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMF 113
>pdb|2P99|A Chain A, E. Coli Methionine Aminopeptidase Monometalated With
Inhibitor Ye6
Length = 261
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 9/102 (8%)
Query: 74 AAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACK 133
A ++ E+ E+ + V G ++ EL + ND + N+ H S GY + C
Sbjct: 16 AGRLAAEVLEMIEPYVKPGVST-----GELDRICNDYIVNEQHAVSACLGYHGYPKSVCI 70
Query: 134 YVNEKLAVKVE---KLGKDS-LVNCAKTSMSSKLIGGDSDFF 171
+NE + + KL KD +VN T + G S F
Sbjct: 71 SINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMF 112
>pdb|4MAT|A Chain A, E.Coli Methionine Aminopeptidase His79ala Mutant
Length = 278
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 9/102 (8%)
Query: 74 AAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACK 133
A ++ E+ E+ + V G ++ EL + ND + N+ H S GY + C
Sbjct: 17 AGRLAAEVLEMIEPYVKPGVST-----GELDRICNDYIVNEQHAVSACLGYHGYPKSVCI 71
Query: 134 YVNEKLAVKVE---KLGKDS-LVNCAKTSMSSKLIGGDSDFF 171
+NE + + KL KD +VN T + G S F
Sbjct: 72 SINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMF 113
>pdb|3MAT|A Chain A, E.coli Methionine Aminopeptidase Transition-state
Inhibitor Complex
Length = 265
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 9/102 (8%)
Query: 74 AAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACK 133
A ++ E+ E+ + V G ++ EL + ND + N+ H S GY + C
Sbjct: 17 AGRLAAEVLEMIEPYVKPGVST-----GELDRICNDYIVNEQHAVSACLGYHGYPKSVCI 71
Query: 134 YVNEKLAVKVE---KLGKDS-LVNCAKTSMSSKLIGGDSDFF 171
+NE + + KL KD +VN T + G S F
Sbjct: 72 SINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMF 113
>pdb|1C27|A Chain A, E. Coli Methionine Aminopeptidase:norleucine Phosphonate
Complex
pdb|1C21|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Complex
pdb|1C22|A Chain A, E. Coli Methionine Aminopeptidase: Trifluoromethionine
Complex
pdb|1C23|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Phosphonate
Complex
pdb|1C24|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Phosphinate
Complex
Length = 263
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 9/102 (8%)
Query: 74 AAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACK 133
A ++ E+ E+ + V G ++ EL + ND + N+ H S GY + C
Sbjct: 16 AGRLAAEVLEMIEPYVKPGVST-----GELDRICNDYIVNEQHAVSACLGYHGYPKSVCI 70
Query: 134 YVNEKLAVKVE---KLGKDS-LVNCAKTSMSSKLIGGDSDFF 171
+NE + + KL KD +VN T + G S F
Sbjct: 71 SINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMF 112
>pdb|2P98|A Chain A, E. Coli Methionine Aminopeptidase Monometalated With
Inhibitor Ye7
pdb|2P9A|A Chain A, E. Coli Methionine Aminopeptidase Dimetalated With
Inhibitor Ye6
pdb|2Q92|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
B23
pdb|2Q94|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A04
Length = 262
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 9/102 (8%)
Query: 74 AAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACK 133
A ++ E+ E+ + V G ++ EL + ND + N+ H S GY + C
Sbjct: 16 AGRLAAEVLEMIEPYVKPGVST-----GELDRICNDYIVNEQHAVSACLGYHGYPKSVCI 70
Query: 134 YVNEKLAVKVE---KLGKDS-LVNCAKTSMSSKLIGGDSDFF 171
+NE + + KL KD +VN T + G S F
Sbjct: 71 SINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMF 112
>pdb|4A6V|A Chain A, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
pdb|4A6V|B Chain B, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
Length = 265
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 9/102 (8%)
Query: 74 AAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACK 133
A ++ E+ E+ + V G ++ EL + ND + N+ H S GY + C
Sbjct: 17 AGRLAAEVLEMIEPYVKPGVST-----GELDRICNDYIVNEQHAVSACLGYHGYPKSVCI 71
Query: 134 YVNEKLAVKVE---KLGKDS-LVNCAKTSMSSKLIGGDSDFF 171
+NE + + KL KD +VN T + G S F
Sbjct: 72 SINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMF 113
>pdb|1XNZ|A Chain A, Crystal Structure Of Mn(Ii) Form Of E. Coli. Methionine
Aminopeptidase In Complex With
5-(2-Chlorophenyl)furan-2- Carboxylic Acid
pdb|2BB7|A Chain A, Mn Form Of E. Coli Methionine Aminopeptidase In Complex
With A Quinolinyl Sulfonamide Inhibitor
pdb|2EVC|A Chain A, Crystal Structure Of E. Coli. Methionine Amino Peptidase
In Complex With 5-(2-(trifluoromethyl)phenyl)furan-2-
Carboxylic Acid
pdb|2EVM|A Chain A, Crystal Structure Of Methionine Aminopeptidase In Complex
With 5-(2,5-Dichlorophenyl)furan-2-Carboxylic Acid
pdb|2EVO|A Chain A, Crystal Structure Of Methionine Amino Peptidase In Complex
With N-Cyclopentyl-N-(Thiazol-2-Yl)oxalamide
pdb|2EVO|B Chain B, Crystal Structure Of Methionine Amino Peptidase In Complex
With N-Cyclopentyl-N-(Thiazol-2-Yl)oxalamide
pdb|1MAT|A Chain A, Structure Of The Cobalt-Dependent Methionine
Aminopeptidase From Escherichia Coli: A New Type Of
Proteolytic Enzyme
Length = 264
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 9/102 (8%)
Query: 74 AAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACK 133
A ++ E+ E+ + V G ++ EL + ND + N+ H S GY + C
Sbjct: 17 AGRLAAEVLEMIEPYVKPGVST-----GELDRICNDYIVNEQHAVSACLGYHGYPKSVCI 71
Query: 134 YVNEKLAVKVE---KLGKDS-LVNCAKTSMSSKLIGGDSDFF 171
+NE + + KL KD +VN T + G S F
Sbjct: 72 SINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMF 113
>pdb|2GG0|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG2|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG3|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG5|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG7|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG8|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG9|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GGB|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GGC|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2Q93|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
B21
pdb|2Q95|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A05
pdb|2Q96|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A18
Length = 263
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 9/102 (8%)
Query: 74 AAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACK 133
A ++ E+ E+ + V G ++ EL + ND + N+ H S GY + C
Sbjct: 16 AGRLAAEVLEMIEPYVKPGVST-----GELDRICNDYIVNEQHAVSACLGYHGYPKSVCI 70
Query: 134 YVNEKLAVKVE---KLGKDS-LVNCAKTSMSSKLIGGDSDFF 171
+NE + + KL KD +VN T + G S F
Sbjct: 71 SINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMF 112
>pdb|2GTX|A Chain A, Structural Basis Of Catalysis By Mononuclear Methionine
Aminopeptidase
pdb|2GTX|B Chain B, Structural Basis Of Catalysis By Mononuclear Methionine
Aminopeptidase
pdb|3D27|A Chain A, E. Coli Methionine Aminopeptidase With Fe Inhibitor W29
Length = 261
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 9/102 (8%)
Query: 74 AAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACK 133
A ++ E+ E+ + V G ++ EL + ND + N+ H S GY + C
Sbjct: 14 AGRLAAEVLEMIEPYVKPGVST-----GELDRICNDYIVNEQHAVSACLGYHGYPKSVCI 68
Query: 134 YVNEKLAVKVE---KLGKDS-LVNCAKTSMSSKLIGGDSDFF 171
+NE + + KL KD +VN T + G S F
Sbjct: 69 SINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMF 110
>pdb|2GU4|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
0.5, Di-Metalated
pdb|2GU4|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
0.5, Di-Metalated
pdb|2GU5|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
1, Di-Metalated
pdb|2GU5|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
1, Di-Metalated
pdb|2GU6|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
2, Di-metalated
pdb|2GU6|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
2, Di-metalated
pdb|2GU7|A Chain A, E. Coli Methionine Aminopeptidase Unliganded, 1:0.5
pdb|2GU7|B Chain B, E. Coli Methionine Aminopeptidase Unliganded, 1:0.5
Length = 263
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 9/102 (8%)
Query: 74 AAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACK 133
A ++ E+ E+ + V G ++ EL + ND + N+ H S GY + C
Sbjct: 16 AGRLAAEVLEMIEPYVKPGVST-----GELDRICNDYIVNEQHAVSACLGYHGYPKSVCI 70
Query: 134 YVNEKLAVKVE---KLGKDS-LVNCAKTSMSSKLIGGDSDFF 171
+NE + + KL KD +VN T + G S F
Sbjct: 71 SINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMF 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,036,011
Number of Sequences: 62578
Number of extensions: 333923
Number of successful extensions: 1200
Number of sequences better than 100.0: 68
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1080
Number of HSP's gapped (non-prelim): 70
length of query: 380
length of database: 14,973,337
effective HSP length: 101
effective length of query: 279
effective length of database: 8,652,959
effective search space: 2414175561
effective search space used: 2414175561
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)