Query 016953
Match_columns 380
No_of_seqs 134 out of 1505
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 04:19:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016953.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016953hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03335 TCP1_alpha TCP-1 (CTT 100.0 1.2E-76 2.6E-81 604.2 42.1 368 13-380 2-369 (527)
2 TIGR02339 thermosome_arch ther 100.0 2E-76 4.4E-81 601.9 42.2 362 12-380 9-371 (519)
3 TIGR02344 chap_CCT_gamma T-com 100.0 1.2E-75 2.7E-80 596.9 40.5 362 12-380 9-372 (525)
4 TIGR02340 chap_CCT_alpha T-com 100.0 2.9E-75 6.2E-80 594.8 43.1 371 10-380 3-373 (536)
5 cd03343 cpn60 cpn60 chaperonin 100.0 1.5E-74 3.1E-79 588.7 41.8 360 13-380 9-368 (517)
6 TIGR02347 chap_CCT_zeta T-comp 100.0 3.9E-74 8.4E-79 584.0 42.7 358 12-380 9-377 (531)
7 TIGR02343 chap_CCT_epsi T-comp 100.0 2.4E-74 5.3E-79 586.6 40.8 358 13-380 21-382 (532)
8 cd03339 TCP1_epsilon TCP-1 (CT 100.0 3E-74 6.6E-79 586.4 41.3 358 13-380 17-378 (526)
9 KOG0361 Chaperonin complex com 100.0 1.2E-75 2.7E-80 540.2 25.1 354 13-380 14-374 (543)
10 cd03340 TCP1_eta TCP-1 (CTT or 100.0 2E-73 4.4E-78 580.2 42.0 354 13-380 10-370 (522)
11 TIGR02342 chap_CCT_delta T-com 100.0 2.8E-73 6.2E-78 577.8 42.0 360 12-380 2-368 (517)
12 cd03336 TCP1_beta TCP-1 (CTT o 100.0 1.3E-72 2.8E-77 572.9 42.6 353 13-380 7-365 (517)
13 PTZ00212 T-complex protein 1 s 100.0 1.5E-72 3.3E-77 573.9 42.6 353 13-380 16-377 (533)
14 cd03338 TCP1_delta TCP-1 (CTT 100.0 1.4E-72 2.9E-77 573.6 41.4 359 13-380 2-367 (515)
15 TIGR02345 chap_CCT_eta T-compl 100.0 6.5E-72 1.4E-76 568.5 40.5 354 13-380 12-371 (522)
16 TIGR02341 chap_CCT_beta T-comp 100.0 7.2E-71 1.6E-75 559.6 42.0 353 13-380 8-366 (519)
17 KOG0358 Chaperonin complex com 100.0 2.2E-72 4.9E-77 517.8 24.1 362 10-380 17-385 (534)
18 TIGR02346 chap_CCT_theta T-com 100.0 2.8E-70 6.2E-75 556.6 42.0 355 13-380 11-369 (531)
19 KOG0360 Chaperonin complex com 100.0 1.7E-71 3.6E-76 524.6 25.1 379 1-380 1-379 (545)
20 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 1.8E-69 3.9E-74 545.5 38.1 328 13-380 6-334 (484)
21 cd03337 TCP1_gamma TCP-1 (CTT 100.0 1.1E-68 2.4E-73 539.6 35.1 321 12-380 9-331 (480)
22 cd00309 chaperonin_type_I_II c 100.0 2.4E-65 5.3E-70 514.9 37.4 315 14-380 3-317 (464)
23 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 1.2E-64 2.6E-69 513.5 36.3 334 31-380 1-336 (485)
24 cd03341 TCP1_theta TCP-1 (CTT 100.0 1.7E-64 3.6E-69 508.3 36.8 314 16-380 5-321 (472)
25 COG0459 GroL Chaperonin GroEL 100.0 6.7E-65 1.4E-69 510.3 33.7 353 12-380 4-365 (524)
26 KOG0364 Chaperonin complex com 100.0 2.5E-66 5.3E-71 485.3 17.5 361 10-380 10-372 (527)
27 KOG0363 Chaperonin complex com 100.0 2.1E-64 4.6E-69 463.1 23.9 353 13-380 12-370 (527)
28 KOG0362 Chaperonin complex com 100.0 4.5E-61 9.7E-66 456.7 33.1 358 7-380 12-372 (537)
29 PTZ00114 Heat shock protein 60 100.0 5.5E-58 1.2E-62 467.7 36.5 310 13-371 16-349 (555)
30 PRK12849 groEL chaperonin GroE 100.0 3.3E-58 7.1E-63 467.2 34.3 312 14-374 5-339 (542)
31 PRK00013 groEL chaperonin GroE 100.0 5.6E-58 1.2E-62 465.5 35.4 309 13-374 4-339 (542)
32 cd03344 GroEL GroEL_like type 100.0 5.7E-58 1.2E-62 464.2 35.4 311 14-373 3-336 (520)
33 KOG0359 Chaperonin complex com 100.0 7.8E-60 1.7E-64 441.0 14.2 349 18-380 16-368 (520)
34 PRK12850 groEL chaperonin GroE 100.0 4E-57 8.6E-62 459.9 35.3 314 13-374 5-340 (544)
35 PRK12851 groEL chaperonin GroE 100.0 5.9E-57 1.3E-61 458.4 36.2 314 13-374 5-340 (541)
36 TIGR02348 GroEL chaperonin Gro 100.0 4E-57 8.7E-62 458.8 34.1 307 14-374 4-338 (524)
37 PRK12852 groEL chaperonin GroE 100.0 8.8E-56 1.9E-60 450.9 34.3 312 13-373 5-339 (545)
38 PRK14104 chaperonin GroEL; Pro 100.0 5.7E-55 1.2E-59 443.9 34.6 312 13-373 5-339 (546)
39 CHL00093 groEL chaperonin GroE 100.0 2E-54 4.4E-59 439.5 31.9 310 13-369 4-335 (529)
40 PLN03167 Chaperonin-60 beta su 100.0 3.6E-54 7.7E-59 440.6 30.3 311 14-371 59-407 (600)
41 cd03334 Fab1_TCP TCP-1 like do 100.0 3.1E-38 6.8E-43 293.7 22.7 203 165-380 17-225 (261)
42 KOG0357 Chaperonin complex com 100.0 6.8E-37 1.5E-41 279.2 11.5 223 13-380 22-246 (400)
43 cd03333 chaperonin_like chaper 100.0 3.1E-33 6.8E-38 252.9 19.8 180 149-380 2-181 (209)
44 KOG0356 Mitochondrial chaperon 100.0 9.8E-30 2.1E-34 246.3 21.3 310 12-370 17-350 (550)
45 KOG0230 Phosphatidylinositol-4 99.9 8.5E-25 1.8E-29 231.1 12.9 202 166-380 332-538 (1598)
46 COG1433 Uncharacterized conser 81.0 7.4 0.00016 31.8 6.8 54 276-330 56-109 (121)
47 PF02579 Nitro_FeMo-Co: Dinitr 77.6 7.7 0.00017 29.5 5.9 38 278-316 46-83 (94)
48 cd00851 MTH1175 This uncharact 74.0 9.9 0.00021 29.4 5.7 44 276-321 54-97 (103)
49 cd00562 NifX_NifB This CD repr 68.8 16 0.00034 28.1 5.8 43 277-320 53-95 (102)
50 PRK07283 hypothetical protein; 58.6 48 0.001 25.8 6.7 50 276-328 25-78 (98)
51 cd01143 YvrC Periplasmic bindi 56.1 41 0.00089 29.0 6.7 52 278-329 53-111 (195)
52 cd04743 NPD_PKS 2-Nitropropane 50.8 64 0.0014 31.1 7.4 57 275-332 72-128 (320)
53 cd01144 BtuF Cobalamin binding 50.6 52 0.0011 29.7 6.7 52 278-329 50-108 (245)
54 PRK09534 btuF corrinoid ABC tr 49.8 50 0.0011 32.2 6.8 53 277-329 111-170 (359)
55 TIGR03151 enACPred_II putative 49.6 77 0.0017 30.3 7.9 58 275-332 77-134 (307)
56 cd00852 NifB NifB belongs to a 48.7 66 0.0014 25.1 6.2 39 274-315 56-94 (106)
57 PRK04175 rpl7ae 50S ribosomal 46.9 86 0.0019 25.5 6.7 51 276-329 37-92 (122)
58 PRK13600 putative ribosomal pr 45.4 1.2E+02 0.0027 23.0 6.8 52 274-325 18-73 (84)
59 PRK06683 hypothetical protein; 45.2 1.1E+02 0.0024 23.0 6.5 53 276-331 18-74 (82)
60 PTZ00106 60S ribosomal protein 45.0 92 0.002 24.8 6.4 51 276-329 32-87 (108)
61 TIGR00129 fdhD_narQ formate de 44.6 38 0.00082 31.1 4.7 45 275-319 182-226 (237)
62 TIGR03677 rpl7ae 50S ribosomal 44.6 94 0.002 25.1 6.5 50 276-325 33-87 (117)
63 PRK13602 putative ribosomal pr 44.6 1.2E+02 0.0026 22.8 6.7 53 275-330 17-73 (82)
64 PRK07714 hypothetical protein; 44.3 1.1E+02 0.0025 23.8 6.8 51 276-329 25-79 (100)
65 TIGR03659 IsdE heme ABC transp 44.0 64 0.0014 30.2 6.4 52 278-329 84-141 (289)
66 cd03308 CmuA_CmuC_like CmuA_Cm 42.6 1.5E+02 0.0032 29.2 8.9 106 259-374 245-360 (378)
67 PRK13601 putative L7Ae-like ri 42.3 1.3E+02 0.0028 22.7 6.5 52 276-330 15-70 (82)
68 PRK01018 50S ribosomal protein 42.0 1.3E+02 0.0029 23.4 6.8 51 276-329 23-78 (99)
69 cd00853 NifX NifX belongs to a 41.5 87 0.0019 24.2 5.8 38 275-315 53-90 (102)
70 cd03309 CmuC_like CmuC_like. P 41.4 1.5E+02 0.0032 28.5 8.5 73 259-334 188-264 (321)
71 TIGR02663 nifX nitrogen fixati 41.3 1E+02 0.0023 24.7 6.4 51 275-328 55-109 (119)
72 PRK00724 formate dehydrogenase 40.3 47 0.001 31.0 4.7 44 275-318 211-254 (263)
73 PF01248 Ribosomal_L7Ae: Ribos 39.7 72 0.0016 24.3 5.0 52 275-329 21-77 (95)
74 PRK05583 ribosomal protein L7A 38.1 1.6E+02 0.0034 23.3 6.7 52 277-331 25-80 (104)
75 cd01141 TroA_d Periplasmic bin 37.9 73 0.0016 27.4 5.3 50 278-327 62-119 (186)
76 PF12846 AAA_10: AAA-like doma 36.6 96 0.0021 28.5 6.3 58 272-329 240-302 (304)
77 cd01138 FeuA Periplasmic bindi 35.7 93 0.002 28.1 5.9 51 278-329 59-113 (248)
78 cd00717 URO-D Uroporphyrinogen 35.0 1.8E+02 0.0038 27.9 8.0 72 259-334 205-280 (335)
79 COG1526 FdhD Uncharacterized p 34.5 61 0.0013 30.3 4.4 45 275-319 211-255 (266)
80 PF03060 NMO: Nitronate monoox 33.8 1.4E+02 0.0031 28.6 7.1 59 274-332 102-161 (330)
81 cd03465 URO-D_like The URO-D _ 33.3 2.1E+02 0.0046 27.1 8.2 106 260-374 199-314 (330)
82 cd01146 FhuD Fe3+-siderophore 33.2 1.3E+02 0.0028 27.3 6.4 52 278-329 58-115 (256)
83 COG4359 Uncharacterized conser 31.3 1E+02 0.0023 27.2 4.9 46 272-317 76-125 (220)
84 PF02634 FdhD-NarQ: FdhD/NarQ 31.2 64 0.0014 29.5 4.0 42 275-316 182-223 (236)
85 PRK05718 keto-hydroxyglutarate 29.5 1.8E+02 0.0039 26.2 6.5 57 276-334 78-135 (212)
86 TIGR01464 hemE uroporphyrinoge 29.4 2.5E+02 0.0054 26.9 8.0 72 259-334 208-283 (338)
87 PF02603 Hpr_kinase_N: HPr Ser 28.2 75 0.0016 26.0 3.5 42 272-313 68-111 (127)
88 cd01424 MGS_CPS_II Methylglyox 27.7 2.6E+02 0.0057 21.7 6.6 63 273-335 14-103 (110)
89 cd01139 TroA_f Periplasmic bin 27.4 1.6E+02 0.0034 28.2 6.2 52 278-329 84-148 (342)
90 cd01140 FatB Siderophore bindi 27.1 1.6E+02 0.0036 26.8 6.1 52 278-329 65-123 (270)
91 COG1358 RPL8A Ribosomal protei 26.9 2.9E+02 0.0062 22.4 6.6 50 275-324 33-87 (116)
92 PRK03379 vitamin B12-transport 26.7 1.7E+02 0.0036 26.9 6.0 52 278-329 65-123 (260)
93 PF01208 URO-D: Uroporphyrinog 26.4 1.1E+02 0.0025 29.2 5.0 106 259-374 210-326 (343)
94 cd01149 HutB Hemin binding pro 26.4 1.9E+02 0.004 25.9 6.2 52 278-329 51-110 (235)
95 PF01497 Peripla_BP_2: Peripla 26.4 2.3E+02 0.005 25.0 6.8 52 278-329 53-112 (238)
96 COG1504 Uncharacterized conser 26.3 3.5E+02 0.0075 21.8 6.7 50 280-329 56-111 (121)
97 PF00809 Pterin_bind: Pterin b 26.3 1.3E+02 0.0028 26.9 5.0 67 268-334 53-123 (210)
98 PRK04247 hypothetical protein; 26.3 2.1E+02 0.0046 26.3 6.3 30 284-313 204-233 (238)
99 PRK06552 keto-hydroxyglutarate 25.6 4.6E+02 0.01 23.5 8.4 56 276-333 79-135 (213)
100 PF01136 Peptidase_U32: Peptid 25.4 3.6E+02 0.0079 24.0 7.9 32 295-326 48-82 (233)
101 cd00636 TroA-like Helical back 24.9 1.9E+02 0.0042 22.6 5.6 35 278-312 54-88 (148)
102 PF07905 PucR: Purine cataboli 24.4 2.5E+02 0.0054 22.6 6.0 43 273-315 60-107 (123)
103 PF01300 Sua5_yciO_yrdC: Telom 24.1 1.7E+02 0.0038 25.2 5.3 86 253-339 44-130 (179)
104 PRK10343 RNA-binding protein Y 23.8 1.7E+02 0.0037 22.9 4.5 59 271-332 8-76 (97)
105 PRK00115 hemE uroporphyrinogen 23.8 4.1E+02 0.0088 25.6 8.4 105 259-375 214-328 (346)
106 PLN02433 uroporphyrinogen deca 23.7 3.7E+02 0.008 25.9 8.0 105 259-375 207-321 (345)
107 PRK10824 glutaredoxin-4; Provi 23.7 2.4E+02 0.0051 22.7 5.5 73 274-353 4-86 (115)
108 PF08708 PriCT_1: Primase C te 23.4 2.8E+02 0.0061 19.7 6.9 52 102-159 15-66 (71)
109 TIGR03859 PQQ_PqqD coenzyme PQ 23.3 2.4E+02 0.0052 20.9 5.2 47 40-86 12-58 (81)
110 cd03307 Mta_CmuA_like MtaA_Cmu 22.4 4.1E+02 0.0088 25.3 8.0 72 259-335 201-274 (326)
111 TIGR00677 fadh2_euk methylenet 21.9 1.4E+02 0.003 28.1 4.5 58 271-334 151-220 (281)
112 PF13380 CoA_binding_2: CoA bi 21.8 2.4E+02 0.0053 22.4 5.4 40 274-313 68-108 (116)
113 TIGR01496 DHPS dihydropteroate 21.1 3.2E+02 0.0069 25.3 6.7 64 268-332 57-123 (257)
114 cd01147 HemV-2 Metal binding p 20.5 2.4E+02 0.0053 25.4 5.8 52 278-329 67-127 (262)
115 PF02796 HTH_7: Helix-turn-hel 20.5 1E+02 0.0023 20.0 2.4 32 104-135 11-42 (45)
116 cd00739 DHPS DHPS subgroup of 20.4 4.1E+02 0.0089 24.6 7.2 64 268-332 58-125 (257)
117 PF04471 Mrr_cat: Restriction 20.3 1.6E+02 0.0034 22.6 3.9 37 275-311 67-106 (115)
No 1
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.2e-76 Score=604.18 Aligned_cols=368 Identities=76% Similarity=1.109 Sum_probs=348.4
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhcCCC
Q 016953 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDG 92 (380)
Q Consensus 13 ~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDG 92 (380)
++.+|.+++..|+.||..+++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|++++|++|++++|||
T Consensus 2 ~~~~~~~~~~~ni~a~~~l~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~q~~~~GDG 81 (527)
T cd03335 2 ERTSGQDVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDKEVGDG 81 (527)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeCcHHHHHHhccccChHHHHHHHHHHHHHHHhCCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccccCHHHHHHHHHHhhccCcCCCchHHHH
Q 016953 93 TTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFA 172 (380)
Q Consensus 93 ttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~~~~~l~~va~t~l~sK~~~~~~~~ls 172 (380)
|||+|+|+++||+++.+|+++|+||+.|++||+.|++.++++|++.++++++..+++.|.++|+|+++||+++.+.++|+
T Consensus 82 TTt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls 161 (527)
T cd03335 82 TTSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISVDNLGKESLINVAKTSMSSKIIGADSDFFA 161 (527)
T ss_pred cchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcccccchhHHHHH
Confidence 99999999999999999999999999999999999999999998633888876678899999999999999998899999
Q ss_pred HHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeEeeEEEcccccCCCCCccccCceEEEEEecccccccccc
Q 016953 173 NLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLG 252 (380)
Q Consensus 173 ~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~~kIll~~~~L~~~~~~~~ 252 (380)
+++++|+..++..+.+|...+++++|+++++.|+++.+|++++|++|++++.+++||++++||||++++++|++++++.+
T Consensus 162 ~l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Ggs~~~s~li~Givi~~~~~~~~m~~~i~n~kIlll~~~Le~~~~~~~ 241 (527)
T cd03335 162 NMVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAKESYLVNGYALNCTRASQGMPTRVKNAKIACLDFNLQKTKMKLG 241 (527)
T ss_pred HHHHHHHHHhhcccccCCCccCHHHeEEEEecCcChhhcceeeeEEEecccCCCCCcccccCCcEEEEeccCCCCccccc
Confidence 99999999985323335456888999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHhCCeEcc
Q 016953 253 VQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVS 332 (380)
Q Consensus 253 ~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa~ii~ 332 (380)
+++.++++++++.+.+.|++++++++++|.+.|++||+++++|++.|++||.++||++++|+++++|+|||++|||++++
T Consensus 242 ~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~lerIa~~tGa~ii~ 321 (527)
T cd03335 242 VQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEAGAMAVRRVKKEDLRRIAKATGATLVS 321 (527)
T ss_pred eeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHhCCEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCcCCCCCCcccceeEEEEEEcCeeEEEEEcCCCCCeeEEeC
Q 016953 333 TFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAVCGLI 380 (380)
Q Consensus 333 s~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g~~~~~~~t~l~ 380 (380)
++.+++..+++++.++|+|++|+++++|+++|++|+||+.+++|||+|
T Consensus 322 ~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~g~~~~~~~TIll 369 (527)
T cd03335 322 TLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKGTKKRSSASIIL 369 (527)
T ss_pred ChhhcCcccccCHhhCccCceEEEEEECCeEEEEEEcCCCCCEEEEEE
Confidence 998775545667778999999999999999999999999999999986
No 2
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=2e-76 Score=601.88 Aligned_cols=362 Identities=45% Similarity=0.670 Sum_probs=345.5
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhcCC
Q 016953 12 GERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGD 91 (380)
Q Consensus 12 ~~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GD 91 (380)
.+..+|.+++..|+.||..+++++++||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|++++||
T Consensus 9 ~~~~~~~~~~~~ni~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~qd~~~GD 88 (519)
T TIGR02339 9 TQRTKGRDAQRNNIAAAKAVAEAVKSTLGPRGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQDAEVGD 88 (519)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeECCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccccCHHHHHHHHHHhhccCcC-CCchHH
Q 016953 92 GTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLI-GGDSDF 170 (380)
Q Consensus 92 Gttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~~~~~l~~va~t~l~sK~~-~~~~~~ 170 (380)
||||+++|+++|++++.+++++|+||+.|++||+.|++.++++|+++ +.+++..+++.|.++|+|+++||+. +.+.++
T Consensus 89 GTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~-s~~v~~~~~~~L~~ia~tsl~sk~~~~~~~~~ 167 (519)
T TIGR02339 89 GTTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEIIDEI-ATKISPEDRDLLKKVAETSLTGKASAEVTKDK 167 (519)
T ss_pred CcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHh-ccccCcccHHHHHHHHHhhhccccccchhHHH
Confidence 99999999999999999999999999999999999999999999997 8888765688999999999999999 789999
Q ss_pred HHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeEeeEEEcccccCCCCCccccCceEEEEEecccccccc
Q 016953 171 FANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQ 250 (380)
Q Consensus 171 ls~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~~kIll~~~~L~~~~~~ 250 (380)
|++++++|+.++.+..++|.+.+|+++|+|+++.|++++||++++|++|++++.+++|+++++||||++++++|++++++
T Consensus 168 ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~Ggs~~ds~lv~G~vi~~~~~~~~m~~~i~n~kIlll~~~Le~~~~~ 247 (519)
T TIGR02339 168 LANLVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTGGSIDDTELVEGIVVDKEPVHPGMPKRVKNAKIALLDAPLEVEKTE 247 (519)
T ss_pred HHHHHHHHHHHHhhhccCCCcccCHHHeEEEEccCcChhcceeEeeEEEecCCCCCCCccccCCCcEEEEeccccccccc
Confidence 99999999999964223465578889999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHhCCeE
Q 016953 251 LGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATM 330 (380)
Q Consensus 251 ~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa~i 330 (380)
.++++.+++++++.++.++|++++++++++|++.|++||+++++|++.+++||.++||++++++++++|+|||++|||++
T Consensus 248 ~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~gI~~v~~v~~~~L~rIa~~tGa~i 327 (519)
T TIGR02339 248 IDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDIEKLARATGAKI 327 (519)
T ss_pred cceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHCCCEEEecCCHHHHHHHHHHhCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCcCCCCCCcccceeEEEEEEcCeeEEEEEcCCCCCeeEEeC
Q 016953 331 VSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAVCGLI 380 (380)
Q Consensus 331 i~s~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g~~~~~~~t~l~ 380 (380)
+++++++ ++..+|+|+.|+++++|+++|++|+||+.+.+|||+|
T Consensus 328 i~~~~~l------~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~l 371 (519)
T TIGR02339 328 VSSIKEI------TESDLGYAGLVEERKVGDDKMTFVEGCKNPKAVTILL 371 (519)
T ss_pred eCchhhC------ChhhccCCceEEEEEECCeEEEEEEcCCCCCEEEEEE
Confidence 9998764 5668999999999999999999999999999999985
No 3
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.2e-75 Score=596.87 Aligned_cols=362 Identities=31% Similarity=0.495 Sum_probs=342.7
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhcCC
Q 016953 12 GERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGD 91 (380)
Q Consensus 12 ~~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GD 91 (380)
.++.+|.+++..|+.||..+++++++||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|++++||
T Consensus 9 ~~~~~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~a~~q~~~~GD 88 (525)
T TIGR02344 9 TKRESGRKAQLSNIQAAKAVADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNAILREIDVAHPAAKSMIELSRTQDEEVGD 88 (525)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHhcccCCCCCCceEEcCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHhhhhhccC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccccCHHHHHHHHHHhhccCcCCCchHHH
Q 016953 92 GTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFF 171 (380)
Q Consensus 92 Gttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~~~~~l~~va~t~l~sK~~~~~~~~l 171 (380)
||||+|+|+++||+++.+|+++|+||+.|++||+.|++.++++|+++ +++++..+.+.|.++|+|+++||+.+.|.+.|
T Consensus 89 GTtt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~-~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~l 167 (525)
T TIGR02344 89 GTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEI-SIPVDVNDDAAMLKLIQSCIGTKFVSRWSDLM 167 (525)
T ss_pred CcchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-ccccCCCCHHHHHHHHHHhhccccchhHHHHH
Confidence 99999999999999999999999999999999999999999999997 88988767888999999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCccccCC-ceeEEecCCCCcccceeEeeEEEcccccCCCCCccccCceEEEEEecccccccc
Q 016953 172 ANLVVEAVQAVKMTNQRGEVKYPIK-GINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQ 250 (380)
Q Consensus 172 s~lv~~av~~~~~~~~~g~~~~~~~-~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~~kIll~~~~L~~~~~~ 250 (380)
++++++|+..+.+.+.++...+|++ +|++.+++||+++||++++|++|++++.++.|+++++||||++++++|++++++
T Consensus 168 s~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS~lv~Gvvi~k~~~~~~m~~~~~n~kIlll~~~Le~~~~~ 247 (525)
T TIGR02344 168 CDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDVTHPKMRRYIENPRIVLLDCPLEYKKGE 247 (525)
T ss_pred HHHHHHHHHHhhccccCCCCccChhhceEEEEecCCChHhcCcccceEEecccCCCCCccccCCCCEEEEeccccccccc
Confidence 9999999999965332222345554 489999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHhCCeE
Q 016953 251 LGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATM 330 (380)
Q Consensus 251 ~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa~i 330 (380)
.++++.++++++++.+.++|++++++++++|.+.|++||+|+++|++.+++||.++||++++++++++|+|||++|||++
T Consensus 248 ~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~~I~av~~v~~~~LerIa~~tGa~i 327 (525)
T TIGR02344 248 SQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKANISAIRRVRKTDNNRIARACGATI 327 (525)
T ss_pred ccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCceEEecCCHHHHHHHHHHhCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCcCCCCCCccc-ceeEEEEEEcCeeEEEEEcCCCCCeeEEeC
Q 016953 331 VSTFADMEGEETFDSSLLGS-ADEVVEERVADDDVIMIKGTKTTSAVCGLI 380 (380)
Q Consensus 331 i~s~~~l~~~~~~~~~~lG~-~~~v~~~~ig~~~~~~f~g~~~~~~~t~l~ 380 (380)
+++++++ +++.+|+ |+.|+++++|+++|++|+||+.+.+|||+|
T Consensus 328 i~~l~~l------~~~~lG~~~~~v~~~~ig~~~~~~~~g~~~~~~~TIlL 372 (525)
T TIGR02344 328 VNRPEEL------RESDVGTGCGLFEVKKIGDEYFTFFTECKDPKACTILL 372 (525)
T ss_pred ecchhhC------CHhhcCCcCCEEEEEEECCeEEEEEEcCCCCCEEEEEE
Confidence 9998764 5678999 999999999999999999999999999986
No 4
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.9e-75 Score=594.78 Aligned_cols=371 Identities=73% Similarity=1.075 Sum_probs=350.6
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhc
Q 016953 10 ILGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREV 89 (380)
Q Consensus 10 ~~~~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~ 89 (380)
...++.+|.+++..|+.||..+++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++
T Consensus 3 ~~~~~~~~~~~~~~ni~~~~~l~~~vkttlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~qd~~~ 82 (536)
T TIGR02340 3 LGGERTSGQDVRTQNVTAAMAIANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDREV 82 (536)
T ss_pred CCcceecHHHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeccHHHHHHHhcccChHHHHHHHHHHHHHHHh
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccccCHHHHHHHHHHhhccCcCCCchH
Q 016953 90 GDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSD 169 (380)
Q Consensus 90 GDGttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~~~~~l~~va~t~l~sK~~~~~~~ 169 (380)
||||||+++|+++|++++.+++++|+||+.|++||+.|++.++++|++..+++++..+.+.+.++|+|+++||+.+.+++
T Consensus 83 GDGTTt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~ 162 (536)
T TIGR02340 83 GDGTTSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKYIKENLSVSVDELGREALINVAKTSMSSKIIGLDSD 162 (536)
T ss_pred CCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHhccccchhhHH
Confidence 99999999999999999999999999999999999999999999998744788876678889999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeEeeEEEcccccCCCCCccccCceEEEEEeccccccc
Q 016953 170 FFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKM 249 (380)
Q Consensus 170 ~ls~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~~kIll~~~~L~~~~~ 249 (380)
+|++++++|+..+...+.+|...+++++|+++++.|+++.+|++++|++|++++.+++|+++++||||++++++|+++++
T Consensus 163 ~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G~s~~~s~~i~Gi~i~~~~~~~~m~~~~~n~kIli~~~~L~~~~~ 242 (536)
T TIGR02340 163 FFSNIVVDAVLAVKMTNENGETKYPIKAVNILKAHGGSARESYLVKGYALNCTRASQQMPKRIKKAKIACLDFNLQKQKM 242 (536)
T ss_pred HHHHHHHHHHHHHhcccccCccccchHHeEEEEecCCCccccEEEEEEEEecccCCCCCcceecCCcEEEEecCCCCCcc
Confidence 99999999999985323345556888999999999999999999999999999999999999999999999999999999
Q ss_pred ccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHhCCe
Q 016953 250 QLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGAT 329 (380)
Q Consensus 250 ~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa~ 329 (380)
+.++++.++++++++.+.+.|++++.+.+++|++.|++||+++++|++.+++||.++||++++|+++++|+|||++|||+
T Consensus 243 ~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~~I~~i~rv~~~~LerIa~~tGa~ 322 (536)
T TIGR02340 243 ALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGIDDMCLKYFVEAGAMGVRRCKKEDLKRIAKATGGT 322 (536)
T ss_pred cCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccccccccCCcCCCCCCcccceeEEEEEEcCeeEEEEEcCCCCCeeEEeC
Q 016953 330 MVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAVCGLI 380 (380)
Q Consensus 330 ii~s~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g~~~~~~~t~l~ 380 (380)
+++++.+++..+++++.++|+|+.|+++++|+++|++|+||+.+.+|||+|
T Consensus 323 ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~TIli 373 (536)
T TIGR02340 323 LVSTLADLEGEETFDASYLGFADEVVEERIADDECILIKGTKGRKSASIIL 373 (536)
T ss_pred EecchhhcCccccccccccccCceEEEEEECCeEEEEEEcCCCCCEEEEEE
Confidence 999998775445677788999999999999999999999999999999985
No 5
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1.5e-74 Score=588.65 Aligned_cols=360 Identities=45% Similarity=0.692 Sum_probs=343.1
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhcCCC
Q 016953 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDG 92 (380)
Q Consensus 13 ~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDG 92 (380)
+..+|.+++..|+.||..+++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++|||
T Consensus 9 ~~~~~~~~~~~n~~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q~~~~GDG 88 (517)
T cd03343 9 QRTSGRDAQRMNIAAAKAVAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQDEEVGDG 88 (517)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCceeEcCCCCEEEEccHHHHHHHccCcCHHHHHHHHHHHHHHHHhCCC
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccccCHHHHHHHHHHhhccCcCCCchHHHH
Q 016953 93 TTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFA 172 (380)
Q Consensus 93 ttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~~~~~l~~va~t~l~sK~~~~~~~~ls 172 (380)
|||+++|+++|++++.+++++|+||+.|++||+.|++.++++|+++ +.+++..+++.+.++|+|+++||+.+.+.+.|+
T Consensus 89 Ttt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~-s~~v~~~~~~~l~~va~ts~~sk~~~~~~~~l~ 167 (517)
T cd03343 89 TTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEI-AIKVDPDDKDTLRKIAKTSLTGKGAEAAKDKLA 167 (517)
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh-hcccCCCCHHHHHHHHHHhhcccchhhHHHHHH
Confidence 9999999999999999999999999999999999999999999997 888875578899999999999999999999999
Q ss_pred HHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeEeeEEEcccccCCCCCccccCceEEEEEecccccccccc
Q 016953 173 NLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLG 252 (380)
Q Consensus 173 ~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~~kIll~~~~L~~~~~~~~ 252 (380)
+++++|+.++.+.+. +...+|+++|+|.+++|++++||++++|++|++++.+++|++.++||||++++++|++++++.+
T Consensus 168 ~l~~~A~~~v~~~~~-~~~~~~~~~I~i~k~~Ggs~~ds~lv~G~v~~~~~~~~~m~~~~~n~~Illl~~~Le~~k~~~~ 246 (517)
T cd03343 168 DLVVDAVLQVAEKRD-GKYVVDLDNIKIEKKTGGSVDDTELIRGIVIDKEVVHPGMPKRVENAKIALLDAPLEVKKTEID 246 (517)
T ss_pred HHHHHHHHHhhhccC-CCccccHHHeeEEeecCcCHHHcceeeeEEEeccCCCCCCccccCCCcEEEEeccccCCccccc
Confidence 999999999853211 2235788999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHhCCeEcc
Q 016953 253 VQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVS 332 (380)
Q Consensus 253 ~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa~ii~ 332 (380)
+++.+++++++..+.++|++++++++++|++.|++||+++++|++.|++||.++||++++++++++|+|||++|||++++
T Consensus 247 ~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~gI~~v~~v~~~~l~~Ia~~tGa~ii~ 326 (517)
T cd03343 247 AKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDMEKLARATGAKIVT 326 (517)
T ss_pred eeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCcEEEEeCCHHHHHHHHHHhCCEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCcCCCCCCcccceeEEEEEEcCeeEEEEEcCCCCCeeEEeC
Q 016953 333 TFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAVCGLI 380 (380)
Q Consensus 333 s~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g~~~~~~~t~l~ 380 (380)
+++++ +++.+|+|+.|+++++|+++|++|+||+.+++|||+|
T Consensus 327 ~~~~l------~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~l 368 (517)
T cd03343 327 NIDDL------TPEDLGEAELVEERKVGDDKMVFVEGCKNPKAVTILL 368 (517)
T ss_pred chhhC------ChhhCCccceEEEEEECCeEEEEEEcCCCCceEEEEE
Confidence 98764 5568999999999999999999999999999999985
No 6
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.9e-74 Score=584.03 Aligned_cols=358 Identities=29% Similarity=0.486 Sum_probs=338.7
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhcCC
Q 016953 12 GERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGD 91 (380)
Q Consensus 12 ~~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GD 91 (380)
.++..|.+++..|+.||..+++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++||
T Consensus 9 ~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~Kmi~~~~G~~~ITnDG~TIlk~i~i~hP~a~ll~~~a~~qd~~~GD 88 (531)
T TIGR02347 9 AESLRRDAALMMNINAARGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLNEMQIQHPTASMIARAATAQDDITGD 88 (531)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhcCCCCCccceEEEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHhhhhhcC
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhccccc-ccCHHHHHHHHHHhhccCcCCCchHH
Q 016953 92 GTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVE-KLGKDSLVNCAKTSMSSKLIGGDSDF 170 (380)
Q Consensus 92 Gttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~-~~~~~~l~~va~t~l~sK~~~~~~~~ 170 (380)
||||+++|+++||+++.+|+++|+||+.|++||+.|++.++++|+++ +.++. ..+.+.|.++|+|+++||+++.++++
T Consensus 89 GTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~-~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ 167 (531)
T TIGR02347 89 GTTSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKF-KIKTEDEVDRELLLNVARTSLRTKLPIDLADQ 167 (531)
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHh-hccCCCCCCHHHHHHHHHHHhccccchhhHHH
Confidence 99999999999999999999999999999999999999999999997 76653 44788999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeEeeEEEcccccCCCCCccccCceEEEEEecccccccc
Q 016953 171 FANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQ 250 (380)
Q Consensus 171 ls~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~~kIll~~~~L~~~~~~ 250 (380)
|++++++|+..+.+ +|. .++.++|++++..|++..||++++|++|++++.+++||++++||||++++++|++++++
T Consensus 168 ls~iv~~Av~~v~~---~~~-~i~~~~I~i~k~~g~s~~ds~~v~Giv~~~~~~~~~~~~~~~n~~Ill~~~~le~~~~~ 243 (531)
T TIGR02347 168 LTEIVVDAVLAIKK---DGE-QIDLFMVEIMEMKHKSATDTTLIRGLVLDHGARHPDMPRRVKNAYILTCNVSLEYEKTE 243 (531)
T ss_pred HHHHHHHHHHHHhh---cCC-CCChhHeEEEEecCCCccccEEEeeEEEecCcCCCCCceeccCceEEEEeCCCCCCccc
Confidence 99999999999953 232 46778899999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCC-------Ce---EEEeCCCCCHHHHHHHHHcCceEEeeCChhHHH
Q 016953 251 LGVQVLVTDPRELEKIRQREADMTKERIEKLLKAG-------AN---VILTTKGIDDMALKYFVEAGAIAVRRVRKEDMR 320 (380)
Q Consensus 251 ~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~g-------v~---lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~ 320 (380)
.+.++.+++++++..+.+.|++++++++++|++.| ++ ||+|+++|++.+++||.++||++++|+++++|+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~~I~~i~rv~~~~le 323 (531)
T TIGR02347 244 VNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKEGIMALRRAKRRNME 323 (531)
T ss_pred cCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHHHHHHHHHCCceEEccCCHHHHH
Confidence 99999999999999999999999999999999976 25 999999999999999999999999999999999
Q ss_pred HHHHHhCCeEccccccccCCcCCCCCCcccceeEEEEEEcCeeEEEEEcCCCCCeeEEeC
Q 016953 321 HIAKATGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAVCGLI 380 (380)
Q Consensus 321 ~la~~tGa~ii~s~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g~~~~~~~t~l~ 380 (380)
|||++|||+++++++++ +++.+|+|+.|+++.+|+++|++|+||+.++.|||+|
T Consensus 324 ~ia~~tGa~~i~~l~~~------~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~TI~l 377 (531)
T TIGR02347 324 RLTLACGGEALNSVEDL------TPECLGWAGLVYETSIGEEKYTFIEEVKNPKSCTILI 377 (531)
T ss_pred HHHHHhCCEEecccccC------CccccccceEEEEEEECCeEEEEEEcCCCCCeEEEEE
Confidence 99999999999998764 5678999999999999999999999999999999985
No 7
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.4e-74 Score=586.61 Aligned_cols=358 Identities=34% Similarity=0.500 Sum_probs=339.1
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhcCCC
Q 016953 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDG 92 (380)
Q Consensus 13 ~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDG 92 (380)
++..|.+++..|+.||..+++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++|||
T Consensus 21 ~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~G~~~ITnDG~tIlk~l~~~hP~akll~~~a~~qd~~~GDG 100 (532)
T TIGR02343 21 KRLKGLEAIKSNIAAAKSVASILRTSLGPKGMDKMLQSPDGDITVTNDGATILSQMDVDNPIAKLMVELSKSQDDEIGDG 100 (532)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEcCCCCEEEeCcHHHHHHHccCCCHHHHHHHHHHHHHHHHhcCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccc--cCHHHHHHHHHHhhccCcCCCchHH
Q 016953 93 TTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEK--LGKDSLVNCAKTSMSSKLIGGDSDF 170 (380)
Q Consensus 93 ttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~--~~~~~l~~va~t~l~sK~~~~~~~~ 170 (380)
|||+++|+++||+++.+|+++|+||+.|++||+.|++.++++|+++ +++++. .+.+.|.++|+|++++|+.+.+.+.
T Consensus 101 TttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~-~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~ 179 (532)
T TIGR02343 101 TTGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEHLEEI-SEEISDDNNNKEPLIQAAKTSLGSKIVSKCHRR 179 (532)
T ss_pred cccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHh-ccccCcCCCCHHHHHHHHHHhhccchhhHHHHH
Confidence 9999999999999999999999999999999999999999999987 887742 3578899999999999998889999
Q ss_pred HHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeEeeEEEcccccCCCCCccccCceEEEEEecccccccc
Q 016953 171 FANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQ 250 (380)
Q Consensus 171 ls~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~~kIll~~~~L~~~~~~ 250 (380)
|++++++|+..+... .. ..+|+++|+++++.|++++||++++|++|++++.+++||+.++||||++++++|++++.+
T Consensus 180 ls~i~~~av~~i~~~-~~--~~~d~~~I~i~ki~Ggs~~ds~~v~Gi~i~~~~~~~~m~~~~~n~kI~l~~~~le~~~~~ 256 (532)
T TIGR02343 180 FAEIAVDAVLMVADM-ER--RDVDFDLIKVEGKVGGSLEDTKLIKGIIIDKDFSHPQMPKEVKDAKIAILTCPFEPPKPK 256 (532)
T ss_pred HHHHHHHHHHhhhhc-CC--CcCCHHHeeEEEecCCCcccceeEeeEEEecCcCCCCCCeeecCCcEEEEEeeccccccc
Confidence 999999999988531 11 257889999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHhCCeE
Q 016953 251 LGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATM 330 (380)
Q Consensus 251 ~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa~i 330 (380)
.+.++.++++++++.+.+.|++++++++++|++.|++||+|+++|++.+++||.++||++++++++++|+|||++|||++
T Consensus 257 ~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~i~~v~~~~~~~l~~Ia~~tGa~~ 336 (532)
T TIGR02343 257 TKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQNDLPAVRWVGGHELELIAIATGGRI 336 (532)
T ss_pred cceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCCcEEEEcCCHHHHHHHHHHhCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCcCCCCCCcccceeEEEEEEcC--eeEEEEEcCCCCCeeEEeC
Q 016953 331 VSTFADMEGEETFDSSLLGSADEVVEERVAD--DDVIMIKGTKTTSAVCGLI 380 (380)
Q Consensus 331 i~s~~~l~~~~~~~~~~lG~~~~v~~~~ig~--~~~~~f~g~~~~~~~t~l~ 380 (380)
+++++++ ++..+|+|+.|+++.+|+ ++|++|+||+.++.|||+|
T Consensus 337 i~~l~~~------~~~~LG~a~~v~~~~ig~~~~~~~~i~~~~~~~~~TIll 382 (532)
T TIGR02343 337 VPRFEEL------SEDKLGKAGLVREISFGTTKDRMLVIEQCKNSKAVTIFI 382 (532)
T ss_pred ecccccC------CHhHCcccceEEEEEecCCcceEEEEECCCCCCEEEEEE
Confidence 9998764 566899999999999997 4899999999999999985
No 8
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3e-74 Score=586.40 Aligned_cols=358 Identities=35% Similarity=0.510 Sum_probs=338.9
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhcCCC
Q 016953 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDG 92 (380)
Q Consensus 13 ~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDG 92 (380)
++..|.+++..|+.||..+++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++|||
T Consensus 17 ~~~~~~~~~~~ni~~~~~i~~~v~tslGP~G~~kmi~~~~G~~~iTnDG~tIlk~l~~~hP~akll~~~a~~q~~~~GDG 96 (526)
T cd03339 17 KRLKGLEAHKSHILAAKSVANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVDHQIAKLLVELSKSQDDEIGDG 96 (526)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEECCCCCEEEeCcHHHHHHHhcccCHHHHHHHHHHHhhhhhhcCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccc--cCHHHHHHHHHHhhccCcCCCchHH
Q 016953 93 TTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEK--LGKDSLVNCAKTSMSSKLIGGDSDF 170 (380)
Q Consensus 93 ttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~--~~~~~l~~va~t~l~sK~~~~~~~~ 170 (380)
|||+++||++|++++.+|+++|+||+.|++||+.|++.++++|+++ +++++. .+.+.|.++|+|+++||+.+.+.+.
T Consensus 97 Ttt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~-~~~~~~~~~~~~~l~~ia~tsl~sk~~~~~~~~ 175 (526)
T cd03339 97 TTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEI-ADKIEFSPDNKEPLIQTAMTSLGSKIVSRCHRQ 175 (526)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-ccccCCCcccHHHHHHHHHHhhcccchhhHHHH
Confidence 9999999999999999999999999999999999999999999997 888752 3578899999999999999899999
Q ss_pred HHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeEeeEEEcccccCCCCCccccCceEEEEEecccccccc
Q 016953 171 FANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQ 250 (380)
Q Consensus 171 ls~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~~kIll~~~~L~~~~~~ 250 (380)
|++++++|+..+... .. ..+|++.|+|++++||+++||++++|++|++++.+++|++.++||||++++++|++++.+
T Consensus 176 ~s~i~v~av~~i~~~-~~--~~~d~~~I~i~ki~Ggs~~dS~~v~Givi~~~~~~~~m~~~~~n~kI~ll~~~le~~~~~ 252 (526)
T cd03339 176 FAEIAVDAVLSVADL-ER--KDVNFELIKVEGKVGGRLEDTKLVKGIVIDKDFSHPQMPKEVKDAKIAILTCPFEPPKPK 252 (526)
T ss_pred HHHHHHHHHHHHhhc-CC--CccchHHeEEEEecCcCHHHcceeeeEEEecccCCCCCCceecCCCEEEEEecccCCccc
Confidence 999999999988532 11 246778999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHhCCeE
Q 016953 251 LGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATM 330 (380)
Q Consensus 251 ~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa~i 330 (380)
.+.++.++++++++.+.++|++++++++++|++.|++||+++++|++.|++||.++||++++++++++|+|||++|||++
T Consensus 253 ~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~v~~~~LerIa~~tGa~i 332 (526)
T cd03339 253 TKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNGLPAVRWVGGVEIELIAIATGGRI 332 (526)
T ss_pred cceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCEEEEeCCHHHHHHHHHHhCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCcCCCCCCcccceeEEEEEEcC--eeEEEEEcCCCCCeeEEeC
Q 016953 331 VSTFADMEGEETFDSSLLGSADEVVEERVAD--DDVIMIKGTKTTSAVCGLI 380 (380)
Q Consensus 331 i~s~~~l~~~~~~~~~~lG~~~~v~~~~ig~--~~~~~f~g~~~~~~~t~l~ 380 (380)
+++++++ ++..+|+|+.|+++.+|. ++|++|+||+.+++|||+|
T Consensus 333 i~~l~~l------~~~~LG~~~~v~~~~ig~~~~~~~~i~g~~~~~~~TIll 378 (526)
T cd03339 333 VPRFEDL------SPEKLGKAGLVREISFGTTKDKMLVIEGCPNSKAVTIFI 378 (526)
T ss_pred ecchhhC------ChhhcccCceEEEEEecCCCcEEEEEECCCCCCEEEEEE
Confidence 9998765 556799999999999985 6999999999999999985
No 9
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-75 Score=540.21 Aligned_cols=354 Identities=35% Similarity=0.573 Sum_probs=336.9
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhcCCC
Q 016953 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDG 92 (380)
Q Consensus 13 ~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDG 92 (380)
+..+|.-...+|+.||..+++.++|+|||+||+|+|+++.|+++|||||+||||.|++.||+++.+++++++||.++|||
T Consensus 14 d~sqGk~QlvSNInaC~~v~e~~rtTLGP~GmDkLivd~~g~~tIsNDGATIlKlldivhPaaktlVdia~sQDaEVGDG 93 (543)
T KOG0361|consen 14 DPSQGKGQLVSNINACTAVAEALRTTLGPRGMDKLIVDSKGKTTISNDGATILKLLDIVHPAAKTLVDIARSQDAEVGDG 93 (543)
T ss_pred CcccCchhhhhchHHHHHHHHHHHhccCccccceeeecCCCcEEEecCcHHHHHHHhhcChhHHHHHHHHhhccccccCC
Confidence 45788988899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccccC----HHHHHHHHHHhhccCcCCCch
Q 016953 93 TTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLG----KDSLVNCAKTSMSSKLIGGDS 168 (380)
Q Consensus 93 ttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~~----~~~l~~va~t~l~sK~~~~~~ 168 (380)
|||||+|++++|+++..+++.|+||..|+++|+.|.+.|++.++++ ++.++..+ ++.|.++|.|+++||++.++.
T Consensus 94 TTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~el-av~i~~~~~~~~r~lL~KcA~T~lsSKlI~~ek 172 (543)
T KOG0361|consen 94 TTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKEL-AVEIDGSSKTELRELLEKCAATALSSKLIRQEK 172 (543)
T ss_pred ceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHh-eeEecccchhhHHHHHHHHHHHHhhhhhhhhhH
Confidence 9999999999999999999999999999999999999999999997 87776433 577999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeEeeEEEcccccCCC---CCccccCceEEEEEeccc
Q 016953 169 DFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQG---MPLRVAPAKIACLDFNLQ 245 (380)
Q Consensus 169 ~~ls~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~---~~~~~~~~kIll~~~~L~ 245 (380)
++|+++++||+..+. . ..+.++|-|+|++||+++||.+++|+.|++.|++.+ .|+++.||||+++|.+|+
T Consensus 173 ~fF~~MvVDAV~~ld---~----~l~~~mIGIKKV~GG~~~dS~lv~GVAFkKtFsYAGfEqqPKk~~NpkIl~LnvELE 245 (543)
T KOG0361|consen 173 EFFAKMVVDAVLTLD---N----DLDLNMIGIKKVPGGAMEDSLLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNVELE 245 (543)
T ss_pred HHHHHHHHHHHHhhc---c----ccchhhcceeecCCCccchhhhccceeeeehccccchhhCccccCCceEEEEeeeee
Confidence 999999999998873 1 356789999999999999999999999999998754 589999999999999999
Q ss_pred ccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHH
Q 016953 246 KTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKA 325 (380)
Q Consensus 246 ~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~ 325 (380)
.+.++.|+++.+.++++++.+++.||+.+.+++++|++.|+++|++.-.|.|.|.|||++++|.|..||+.+||.|+..+
T Consensus 246 lKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrdiFCAGRV~~eDl~Rv~~a 325 (543)
T KOG0361|consen 246 LKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLNRVMQA 325 (543)
T ss_pred ecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccCceecCcCCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCeEccccccccCCcCCCCCCcccceeEEEEEEcCeeEEEEEcCCCCCeeEEeC
Q 016953 326 TGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAVCGLI 380 (380)
Q Consensus 326 tGa~ii~s~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g~~~~~~~t~l~ 380 (380)
||++++++.++ +.+..+|+|..|+++++|+++|.+|+||++.+.||++|
T Consensus 326 cGGsi~tt~~~------i~~~~LG~C~~FeE~QvG~eRyN~Fegcp~aktcTliL 374 (543)
T KOG0361|consen 326 CGGSIQTTVSD------IKEEVLGTCALFEERQVGGERYNLFEGCPKAKTCTLIL 374 (543)
T ss_pred cCcchhhhhhh------cchhhcchhhhHHHHhhcchhhhhhcCCCccceeEEEE
Confidence 99999998876 46789999999999999999999999999999999986
No 10
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2e-73 Score=580.23 Aligned_cols=354 Identities=37% Similarity=0.610 Sum_probs=336.6
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhcCCC
Q 016953 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDG 92 (380)
Q Consensus 13 ~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDG 92 (380)
++..|.+++.+|+.||..+++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++|||
T Consensus 10 ~~~~~~~~~~~ni~a~~~i~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~q~~~~GDG 89 (522)
T cd03340 10 DTSQGKGQLISNINACQAIADAVRTTLGPRGMDKLIVDGRGKVTISNDGATILKLLDIVHPAAKTLVDIAKSQDAEVGDG 89 (522)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEEEcCCCCEEEeccHHHHHHHccccCHHHHHHHHHHHHhHhHhCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhccccccc----CHHHHHHHHHHhhccCcCCCch
Q 016953 93 TTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKL----GKDSLVNCAKTSMSSKLIGGDS 168 (380)
Q Consensus 93 ttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~----~~~~l~~va~t~l~sK~~~~~~ 168 (380)
|||+|+|+++||+++.+++++|+||+.|++||+.|++.++++|+++ +++++.. +++.+.++|+|+++||+.+.+.
T Consensus 90 Ttt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~-s~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~ 168 (522)
T cd03340 90 TTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEI-AVNIDKEDKEEQRELLEKCAATALNSKLIASEK 168 (522)
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-hcccCcccccccHHHHHHHHHHHhccCcchhHH
Confidence 9999999999999999999999999999999999999999999997 8888653 3677999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeEeeEEEcccccCCC---CCccccCceEEEEEeccc
Q 016953 169 DFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQG---MPLRVAPAKIACLDFNLQ 245 (380)
Q Consensus 169 ~~ls~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~---~~~~~~~~kIll~~~~L~ 245 (380)
++|++++++|+..+.+ .+|.++|+++++.|+++.||++++|++|++++.+++ ||++++||||++++++|+
T Consensus 169 ~~l~~l~~~A~~~v~~-------~~~~~~I~i~~i~Ggs~~ds~lv~Giv~~k~~~~~~~~~~~~~~~n~kIll~~~~Le 241 (522)
T cd03340 169 EFFAKMVVDAVLSLDD-------DLDLDMIGIKKVPGGSLEDSQLVNGVAFKKTFSYAGFEQQPKKFKNPKILLLNVELE 241 (522)
T ss_pred HHHHHHHHHHHHHhcc-------cCChhHheEeeecCCChhhceeeeeEEEecccCccccccCCccccCCeEEEEeCCCC
Confidence 9999999999999832 245688999999999999999999999999999765 589999999999999999
Q ss_pred ccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHH
Q 016953 246 KTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKA 325 (380)
Q Consensus 246 ~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~ 325 (380)
+++++.+.++.++++++++.+.+.|+++++++++++++.|+++|+|+++|+|.+++||.++||++++++++++|+|||++
T Consensus 242 ~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~~~I~~~~~v~~~~l~rIa~~ 321 (522)
T cd03340 242 LKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLKRVAQA 321 (522)
T ss_pred CCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCeEccccccccCCcCCCCCCcccceeEEEEEEcCeeEEEEEcCCCCCeeEEeC
Q 016953 326 TGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAVCGLI 380 (380)
Q Consensus 326 tGa~ii~s~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g~~~~~~~t~l~ 380 (380)
|||+++++++++ ++..+|+|+.|+++++|+++|++|+||+.+++||+||
T Consensus 322 tGa~ii~~l~~l------~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIll 370 (522)
T cd03340 322 TGGSIQTTVSNI------TDDVLGTCGLFEERQVGGERYNIFTGCPKAKTCTIIL 370 (522)
T ss_pred HCCEEeeccccC------CccccccceEEEEEEECCEEEEEEECCCCCceEEEEE
Confidence 999999998764 5678999999999999999999999999999999985
No 11
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.8e-73 Score=577.78 Aligned_cols=360 Identities=35% Similarity=0.555 Sum_probs=340.2
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhcCC
Q 016953 12 GERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGD 91 (380)
Q Consensus 12 ~~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GD 91 (380)
+++..+.+++.+|+.||..+++++++||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|++++||
T Consensus 2 ~~~~~~~~~~~~ni~a~~~ia~~~kttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GD 81 (517)
T TIGR02342 2 QDKDKPTDVRTSNIVAAKAVADAIRTSLGPRGMDKMIQSGNGEVIITNDGATILKQMGVIHPAAKMLVELSKAQDIEAGD 81 (517)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEEcCCCCEEEeCCHHHHHHhccccChHHHHHHHHHHHHHHHhCC
Confidence 35577888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccccCHHHHHHHHHHhhccCcCCCchHHH
Q 016953 92 GTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFF 171 (380)
Q Consensus 92 Gttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~~~~~l~~va~t~l~sK~~~~~~~~l 171 (380)
||||+++|+++||+++.+|+++|+||+.|++||+.|++.++++|+++ ++|++..+.+.|.++|+|+++||+.+.+.++|
T Consensus 82 GTtt~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~-~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~l 160 (517)
T TIGR02342 82 GTTSVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKILDEM-SIPVDLSDREILIKSATTSLSSKVVSQYSSLL 160 (517)
T ss_pred CcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-ccccCccCHHHHHHHHHHHhccccchhHHHHH
Confidence 99999999999999999999999999999999999999999999997 88887667889999999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeEeeEEEcccccC-CCCCccccCceEEEEEecccccccc
Q 016953 172 ANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAA-QGMPLRVAPAKIACLDFNLQKTKMQ 250 (380)
Q Consensus 172 s~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~-~~~~~~~~~~kIll~~~~L~~~~~~ 250 (380)
++++++|+..+.+...+| .+++++|+++++.|+++.+|++++|++|++++.+ ++||+.++||||++++|+|++++++
T Consensus 161 s~l~~~a~~~v~~~~~~~--~~~~~~i~i~k~~Ggs~~ds~li~Givl~k~~~~~~~mpk~i~n~kI~ll~~~Le~~~~~ 238 (517)
T TIGR02342 161 APLAVDAVLKVIDPENDK--NVDLNDIKVVKKLGGTIDDTELIEGLVFTQKASRSAGGPTRIEKAKIGLIQFQISPPKTD 238 (517)
T ss_pred HHHHHHHHHHHhccccCC--ccCHHHeeEEeccCCChhhcEEEeeEEEeccccccCCCCccccCCcEEEEecCCCCCccc
Confidence 999999999996422233 4778899999999999999999999999999998 5899999999999999999999999
Q ss_pred cceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCC-----CHHHHHHHHHcCceEEeeCChhHHHHHHHH
Q 016953 251 LGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGI-----DDMALKYFVEAGAIAVRRVRKEDMRHIAKA 325 (380)
Q Consensus 251 ~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I-----~~~al~~l~~~~I~vv~~v~~~~l~~la~~ 325 (380)
.+.++.++++++++.+.++|+++++++++++++.|++||+|+++| ++.+++||.++||++++++++++|+|||++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~~~I~av~~v~~~~LerIa~~ 318 (517)
T TIGR02342 239 MENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAKMKIMVVKDIEREEVEFICKT 318 (517)
T ss_pred ccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhhCCceEEecCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred hCCeEccccccccCCcCCCCCCcccceeEEEEEEcCeeEEEEEcCCCC-CeeEEeC
Q 016953 326 TGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTT-SAVCGLI 380 (380)
Q Consensus 326 tGa~ii~s~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g~~~~-~~~t~l~ 380 (380)
|||+++++++++ ++..+|+|+.|+++++++++|++|++|+.+ +.|||+|
T Consensus 319 tGa~ii~~~~~l------~~~~LG~~~~v~~~~~~~~~~~~i~~~~~~~~~~tIll 368 (517)
T TIGR02342 319 IGCKPIASIDHF------TADKLGSAELVEEVTTDGGKIIKITGIQNAGKTVTVLL 368 (517)
T ss_pred HCCEEEcchhhc------CcccCcCCceEEEEEECCeEEEEEEccCCCCceEEEEE
Confidence 999999998764 566899999999999999999999999985 8899985
No 12
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.3e-72 Score=572.92 Aligned_cols=353 Identities=35% Similarity=0.557 Sum_probs=334.0
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecC--CCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhcC
Q 016953 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDD--IGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVG 90 (380)
Q Consensus 13 ~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~--~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~G 90 (380)
++.+|.+++..|+.||..+++++++||||+||+|||+++ .|+++|||||+||+++|+++||+++|+++++++|++++|
T Consensus 7 ~~~~~~~a~~~n~~~~~~i~~~v~tslGP~G~~Kmi~~~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~qd~~~G 86 (517)
T cd03336 7 QEEKGETARLSSFVGAIAIGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATILKSIGVDNPAAKVLVDISKVQDDEVG 86 (517)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEeecCCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHHHHhHhC
Confidence 567889999999999999999999999999999999998 499999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhccccccc---CHHHHHHHHHHhhccCcCCCc
Q 016953 91 DGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKL---GKDSLVNCAKTSMSSKLIGGD 167 (380)
Q Consensus 91 DGttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~---~~~~l~~va~t~l~sK~~~~~ 167 (380)
|||||+|+|+++||+++.+|+++|+||+.|++||+.|.+.++++|+++ +++++.. +.+.|.++|+|+++||+.+.+
T Consensus 87 DGTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~-~~~~~~~~~~~~~~l~~ia~t~lssk~~~~~ 165 (517)
T cd03336 87 DGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSS-AVDHSSDEEAFREDLLNIARTTLSSKILTQD 165 (517)
T ss_pred CChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-ccCcccccchhHHHHHHHHHhhccccccchh
Confidence 999999999999999999999999999999999999999999999997 8887521 357899999999999999999
Q ss_pred hHHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeEeeEEEcccccCCCCCccccCceEEEEEeccccc
Q 016953 168 SDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKT 247 (380)
Q Consensus 168 ~~~ls~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~~kIll~~~~L~~~ 247 (380)
+++|++++++|+..+.. .++.++|++.++.|++++||++++|+++++.+.+ .||++++||||++++++|+++
T Consensus 166 ~~~l~~l~~~A~~~v~~-------~~~~~~i~i~ki~G~s~~ds~l~~G~v~~~~~~~-~~~~~~~n~kIli~~~~le~~ 237 (517)
T cd03336 166 KEHFAELAVDAVLRLKG-------SGNLDAIQIIKKLGGSLKDSYLDEGFLLDKKIGV-NQPKRIENAKILIANTPMDTD 237 (517)
T ss_pred HHHHHHHHHHHHHHhhc-------cCCccceeEEEccCCCccceEEEeeEEEecccCC-CCCCeeccccEEEEecCCCcc
Confidence 99999999999999831 3667899999999999999999999999998765 579999999999999999999
Q ss_pred cccc-ceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHh
Q 016953 248 KMQL-GVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKAT 326 (380)
Q Consensus 248 ~~~~-~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~t 326 (380)
+++. ++++.+++++++..+.+.|++++++++++|++.|+++++++++|++.+++||.++||++++++++++|+|||++|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~~I~av~~v~~~~L~rIa~~t 317 (517)
T cd03336 238 KIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADAGIMAIEHADFDGVERLALVT 317 (517)
T ss_pred cccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHHHHHh
Confidence 9987 889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEccccccccCCcCCCCCCcccceeEEEEEEcCeeEEEEEcCCCCCeeEEeC
Q 016953 327 GATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAVCGLI 380 (380)
Q Consensus 327 Ga~ii~s~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g~~~~~~~t~l~ 380 (380)
||+++++++++ ++..+|+|+.|+++.+|+++|++|+||+++++|||+|
T Consensus 318 Ga~ii~~l~~~------~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~l 365 (517)
T cd03336 318 GGEIASTFDHP------ELVKLGTCKLIEEIMIGEDKLIRFSGVAAGEACTIVL 365 (517)
T ss_pred CCEEecccCCC------CcccccccceEEEEEECCeEEEEEEccCCCceEEEEE
Confidence 99999998764 5667999999999999999999999999999999985
No 13
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=1.5e-72 Score=573.95 Aligned_cols=353 Identities=37% Similarity=0.570 Sum_probs=334.8
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecC-----CCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhh
Q 016953 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDD-----IGDVTITNDGATILKMLEVEHPAAKVLVELAELQDR 87 (380)
Q Consensus 13 ~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~-----~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~ 87 (380)
++.+|.+++..|+.||..+++++++||||+||+|||+++ .|+++|||||+|||++|+++||+++|+++++++|++
T Consensus 16 ~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~Kmi~~~~~~~~~G~~~iTnDG~TIlk~i~~~hP~akll~~~a~~qd~ 95 (533)
T PTZ00212 16 QEEKGETARLQSFVGAIAVADLVKTTLGPKGMDKILQPMSEGPRSGNVTVTNDGATILKSVWLDNPAAKILVDISKTQDE 95 (533)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhCCCCCCccceEeecCCCcccCCCEEEeccHHHHHHhccCcCHHHHHHHHHHHhhhh
Confidence 578899999999999999999999999999999999998 699999999999999999999999999999999999
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccccC---HHHHHHHHHHhhccCcC
Q 016953 88 EVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLG---KDSLVNCAKTSMSSKLI 164 (380)
Q Consensus 88 ~~GDGttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~~---~~~l~~va~t~l~sK~~ 164 (380)
++||||||+|+|+++||+++.+|+++|+||+.|++||+.|++.++++|+++ +++++..+ .+.|.++|+|+++||+.
T Consensus 96 ~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~-s~~~~~~~~~~~~~l~~va~t~l~sk~~ 174 (533)
T PTZ00212 96 EVGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEEI-AFDHGSDEEKFKEDLLNIARTTLSSKLL 174 (533)
T ss_pred hhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-CcCCCccchhhHHHHHHHHHHHhccccc
Confidence 999999999999999999999999999999999999999999999999997 88886433 57899999999999999
Q ss_pred CCchHHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeEeeEEEcccccCCCCCccccCceEEEEEecc
Q 016953 165 GGDSDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNL 244 (380)
Q Consensus 165 ~~~~~~ls~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~~kIll~~~~L 244 (380)
+.+.+.|++++++|+..+.. .+++++|++.+++|++++||++++|+++++++.+ .||++++||||++++++|
T Consensus 175 ~~~~~~l~~i~~~av~~i~~-------~~~~~~I~i~ki~Ggsi~ds~lv~G~v~~~~~~~-~~~~~i~n~kIll~~~~L 246 (533)
T PTZ00212 175 TVEKDHFAKLAVDAVLRLKG-------SGNLDYIQIIKKPGGTLRDSYLEDGFILEKKIGV-GQPKRLENCKILVANTPM 246 (533)
T ss_pred chhHHHHHHHHHHHHHHHhc-------cCCccceEEEEecCcCccccEEEEeEEEecccCC-CCCccccCCcEEEEeCCC
Confidence 99999999999999998842 2567899999999999999999999999998765 589999999999999999
Q ss_pred ccccccc-ceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHH
Q 016953 245 QKTKMQL-GVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIA 323 (380)
Q Consensus 245 ~~~~~~~-~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la 323 (380)
++++++. ++++.+++++++..+.+.|++++++++++|++.|+++++++++|++.+++||.++||++++|+++.+++|||
T Consensus 247 e~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~~I~avr~v~~~~l~rIa 326 (533)
T PTZ00212 247 DTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEAGIMAIEHADFDGMERLA 326 (533)
T ss_pred CCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCCEEEecCCHHHHHHHH
Confidence 9999997 889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeEccccccccCCcCCCCCCcccceeEEEEEEcCeeEEEEEcCCCCCeeEEeC
Q 016953 324 KATGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAVCGLI 380 (380)
Q Consensus 324 ~~tGa~ii~s~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g~~~~~~~t~l~ 380 (380)
++|||+++++++++ ++..+|+|+.|+++.+|+++|++|+||+.+++|||+|
T Consensus 327 ~~tGa~iis~l~~~------~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~l 377 (533)
T PTZ00212 327 AALGAEIVSTFDTP------EKVKLGHCDLIEEIMIGEDKLIRFSGCAKGEACTIVL 377 (533)
T ss_pred HHhCCEEeecCCCC------CHHHccCCceEEEEEECCeEEEEEEccCCCCEEEEEE
Confidence 99999999998764 5567999999999999999999999999999999985
No 14
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.4e-72 Score=573.63 Aligned_cols=359 Identities=34% Similarity=0.550 Sum_probs=338.7
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhcCCC
Q 016953 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDG 92 (380)
Q Consensus 13 ~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDG 92 (380)
++..+.+++.+|+.||..+++++++||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|++++|||
T Consensus 2 ~~~~~~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hp~a~ll~~~a~~q~~~~GDG 81 (515)
T cd03338 2 DKEKPADVRLSNIQAAKAVADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQMSVLHPAAKMLVELSKAQDIEAGDG 81 (515)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeeCCCCCEEEECcHHHHHHhCcCcCHHHHHHHHHHHHHHhHhcCC
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccccCHHHHHHHHHHhhccCcCCCchHHHH
Q 016953 93 TTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFA 172 (380)
Q Consensus 93 ttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~~~~~l~~va~t~l~sK~~~~~~~~ls 172 (380)
|||+++|+++|++++.+++++|+||..|++||+.|.+.++++|+++ +.+++..+.+.|.++|+|+++||+.+.++++++
T Consensus 82 Ttt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~-a~~v~~~~~~~l~~va~ts~~sK~~~~~~~~ls 160 (515)
T cd03338 82 TTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSM-SIPVDLNDRESLIKSATTSLNSKVVSQYSSLLA 160 (515)
T ss_pred cchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-ccCCCCCCHHHHHHHHHHHhccccchhhHHHHH
Confidence 9999999999999999999999999999999999999999999997 888875578899999999999999999999999
Q ss_pred HHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeEeeEEEcccccCCC-CCccccCceEEEEEeccccccccc
Q 016953 173 NLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQG-MPLRVAPAKIACLDFNLQKTKMQL 251 (380)
Q Consensus 173 ~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~-~~~~~~~~kIll~~~~L~~~~~~~ 251 (380)
+++++|+.++.+.+.. ..+|+++|++.++.|++++||++++|++|++++.++. ||+.++|||+++++|+|++++++.
T Consensus 161 ~li~~A~~~v~~~~~~--~~~d~~~i~i~~~~Ggs~~ds~lv~Giv~~k~~~~~~~~p~~i~n~ki~ll~~~le~~~~~~ 238 (515)
T cd03338 161 PIAVDAVLKVIDPATA--TNVDLKDIRIVKKLGGTIEDTELVDGLVFTQKASKKAGGPTRIEKAKIGLIQFCLSPPKTDM 238 (515)
T ss_pred HHHHHHHHHhhccccc--CcCCHHHeEEEEecCCChhhceeeeeEEEeccccCcCCCCccccCCcEEEEecccccccccc
Confidence 9999999999542211 2577899999999999999999999999999999886 499999999999999999999999
Q ss_pred ceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCC-----CHHHHHHHHHcCceEEeeCChhHHHHHHHHh
Q 016953 252 GVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGI-----DDMALKYFVEAGAIAVRRVRKEDMRHIAKAT 326 (380)
Q Consensus 252 ~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I-----~~~al~~l~~~~I~vv~~v~~~~l~~la~~t 326 (380)
+.++.++++++++.+.++|++++++++++|++.|++||+|+++| ++.+++||.++||++++++++++|+|||++|
T Consensus 239 ~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~~~I~av~~~~~~~LerIa~~t 318 (515)
T cd03338 239 DNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAKLKIMVVKDIEREEIEFICKTI 318 (515)
T ss_pred CceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHHCCceEEecCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 8999999999999999999999999999999
Q ss_pred CCeEccccccccCCcCCCCCCcccceeEEEEEEcCeeEEEEEcCCC-CCeeEEeC
Q 016953 327 GATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKT-TSAVCGLI 380 (380)
Q Consensus 327 Ga~ii~s~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g~~~-~~~~t~l~ 380 (380)
||+++++++++ ++..+|+|+.|+++++|+++|++|++|+. +++|||+|
T Consensus 319 Ga~ii~sl~~l------~~~~LG~~~~v~~~~~g~~~~~~i~~~~~~~~~~TIll 367 (515)
T cd03338 319 GCKPVASIDHF------TEDKLGSADLVEEVSLGDGKIVKITGVKNPGKTVTILV 367 (515)
T ss_pred CCEEecccccC------CHhhCCCCceEEEEEECCeEEEEEEecCCCCceEEEEE
Confidence 99999998765 55679999999999999999999999998 79999985
No 15
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=6.5e-72 Score=568.45 Aligned_cols=354 Identities=35% Similarity=0.579 Sum_probs=336.1
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhcCCC
Q 016953 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDG 92 (380)
Q Consensus 13 ~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDG 92 (380)
++..|.+++..|+.||.++++++++||||+||+|||+++.| ++|||||+|||++|+++||+++|+++++++|++++|||
T Consensus 12 ~~~~~~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g-~~iTnDG~TIlk~i~~~hP~a~ll~~~a~~q~~~~GDG 90 (522)
T TIGR02345 12 DTSQGKGQLISNINACVAIAEILKTTLGPRGMDKLIVGKNG-ATVSNDGATILKLLDIVHPAAKTLVDIAKSQDSEVGDG 90 (522)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEECCCC-cEEeCcHHHHHHHhcccChHHHHHHHHHHHHHHHhCCC
Confidence 57889999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccc---cCHHHHHHHHHHhhccCcCCCchH
Q 016953 93 TTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEK---LGKDSLVNCAKTSMSSKLIGGDSD 169 (380)
Q Consensus 93 ttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~---~~~~~l~~va~t~l~sK~~~~~~~ 169 (380)
|||+|+|+++||+++.+++++|+||+.|++||+.|++.++++|+++ +++++. .+.+.+.++|+|+++||+++.+++
T Consensus 91 TTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~-s~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~ 169 (522)
T TIGR02345 91 TTSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEKLKEI-AVTIDEVKGEQREVLEKCAATALNSKLIAHEKE 169 (522)
T ss_pred chhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-ccCcCCcccccHHHHHHHHHHHhccccccchHH
Confidence 9999999999999999999999999999999999999999999997 888863 245789999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeEeeEEEcccccCCCC---CccccCceEEEEEecccc
Q 016953 170 FFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGM---PLRVAPAKIACLDFNLQK 246 (380)
Q Consensus 170 ~ls~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~---~~~~~~~kIll~~~~L~~ 246 (380)
+|++++++|+.++.+ + .+|.++|+++++.|+++.||++++|++|++++.+++| |++++||||++++++|++
T Consensus 170 ~l~~l~~~A~~~v~~---~---~~~~~~I~i~ki~Ggs~~ds~~v~Giv~~~~~~~~~~~~~~~~~~n~kIll~~~~Le~ 243 (522)
T TIGR02345 170 FFSKMIVDAVLQLDI---D---DLDLKLIGVKKVQGGSLQDSVLVNGVAFKKTFSYAGFEQQPKKFANPKILLLNVELEL 243 (522)
T ss_pred HHHHHHHHHHHHHhh---c---cCChhHheEEeecCCCHHhcceecceEEecccCccccccCCceeccceEEEEecCccc
Confidence 999999999999842 1 4777899999999999999999999999999987764 899999999999999999
Q ss_pred cccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHh
Q 016953 247 TKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKAT 326 (380)
Q Consensus 247 ~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~t 326 (380)
.+.+.+..+.++++++++.+.+.|+++++++++++++.|+++|+|+++|++.+++||.++||++++++++++++|+|++|
T Consensus 244 ~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~~~I~~~~~v~~~dl~ria~~t 323 (522)
T TIGR02345 244 KAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFADHNIFCAGRVSDEDLKRVVKAC 323 (522)
T ss_pred CccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHHHHHh
Confidence 99998999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEccccccccCCcCCCCCCcccceeEEEEEEcCeeEEEEEcCCCCCeeEEeC
Q 016953 327 GATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAVCGLI 380 (380)
Q Consensus 327 Ga~ii~s~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g~~~~~~~t~l~ 380 (380)
||+++++++++ ++..+|+|+.|+++++++++|++|+||+.+++|||+|
T Consensus 324 ga~ii~~~~~l------~~~~LG~~~~ie~~~~~~~r~~~~~g~~~~~~~TI~l 371 (522)
T TIGR02345 324 GGSIQSTTSDL------EADVLGTCALFEERQIGSERYNYFTGCPHAKTCTIIL 371 (522)
T ss_pred CCeEEcchhhC------ChhhccCCceEEEEEECCeEEEEEEcCCCCceEEEEE
Confidence 99999998764 5678999999999999999999999999999999985
No 16
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=7.2e-71 Score=559.62 Aligned_cols=353 Identities=36% Similarity=0.556 Sum_probs=332.6
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCC--CCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhcC
Q 016953 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDI--GDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVG 90 (380)
Q Consensus 13 ~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~--g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~G 90 (380)
+..+|.+++..|+.|+.++++++++||||+||+|||+++. |+++|||||+|||++|+++||+++|+++++++|++++|
T Consensus 8 ~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~~~G~~~iTnDG~tIlk~l~i~hP~akll~~~a~~qd~~~G 87 (519)
T TIGR02341 8 QEERGENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSGSSESGIMVTNDGATILKSIGVDNPAAKVLVDMSKVQDDEVG 87 (519)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEEeccCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHHhHhhhC
Confidence 5678899999999999999999999999999999999985 99999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhccccccc---CHHHHHHHHHHhhccCcCCCc
Q 016953 91 DGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKL---GKDSLVNCAKTSMSSKLIGGD 167 (380)
Q Consensus 91 DGttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~---~~~~l~~va~t~l~sK~~~~~ 167 (380)
|||||+|+|+++||++|.+|+++|+||+.|++||+.|++.++++|+++ +++++.. +.+.|.++|+|+++||+.+.+
T Consensus 88 DGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~-~~~~~~~~~~~~~~L~~ia~t~l~ski~~~~ 166 (519)
T TIGR02341 88 DGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEALKKS-SIDNGSDKTKFRDDLLNIARTTLSSKILSQH 166 (519)
T ss_pred CchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-cccccCcccccHHHHHHHHHHHhhhhhhhhH
Confidence 999999999999999999999999999999999999999999999997 8888532 357899999999999999999
Q ss_pred hHHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeEeeEEEcccccCCCCCccccCceEEEEEeccccc
Q 016953 168 SDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKT 247 (380)
Q Consensus 168 ~~~ls~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~~kIll~~~~L~~~ 247 (380)
.+.|++++++|+..+.. ..+.++|++.++.|+++++|++++|+++++.+.+ .||++++||||++++++|+++
T Consensus 167 ~~~~s~l~~~av~~i~~-------~~~~~~i~i~k~~G~s~~~s~l~~G~v~~~~~~~-~~~~~~~n~~Ili~~~~Le~~ 238 (519)
T TIGR02341 167 KDHFAQLAVDAVLRLKG-------SGNLDAIQIIKKLGGSLNDSYLDEGFLLEKKIGV-NQPKRIENAKILIANTPMDTD 238 (519)
T ss_pred HHHHHHHHHHHHHHhcc-------CCChhheEEEEccCCCcccceEEeeEEEeccCCC-CCceeeccccEEEEecCCCCC
Confidence 99999999999998832 1245779999999999999999999999998765 689999999999999999999
Q ss_pred cccc-ceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHh
Q 016953 248 KMQL-GVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKAT 326 (380)
Q Consensus 248 ~~~~-~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~t 326 (380)
+++. ++++.+++++++..+.+.|+++++++++.|++.|++++++++.|++.+++||.++||++++++++.+|+|||++|
T Consensus 239 ~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~~I~~v~~~~~~~l~~ia~~t 318 (519)
T TIGR02341 239 KVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFADAGVMAIEHADFEGIERLALVT 318 (519)
T ss_pred ccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHCCcEEEecCCHHHHHHHHHHh
Confidence 9886 889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEccccccccCCcCCCCCCcccceeEEEEEEcCeeEEEEEcCCCCCeeEEeC
Q 016953 327 GATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAVCGLI 380 (380)
Q Consensus 327 Ga~ii~s~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g~~~~~~~t~l~ 380 (380)
||+++++++++ ++..+|+|+.|+++.+|+++|++|+||+.++.|||+|
T Consensus 319 Ga~ii~~~~~~------~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIll 366 (519)
T TIGR02341 319 GGEIVSTFDHP------ELVKLGSCDLIEEIMIGEDKLLKFSGVKLGEACTIVL 366 (519)
T ss_pred CCEEecccccC------CccccccCceEEEEEECCEEEEEEEcCCCCCEEEEEE
Confidence 99999998764 5667999999999999999999999999999999985
No 17
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-72 Score=517.81 Aligned_cols=362 Identities=35% Similarity=0.559 Sum_probs=341.1
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhc
Q 016953 10 ILGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREV 89 (380)
Q Consensus 10 ~~~~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~ 89 (380)
.+.++.+.+++|.+|++|++++++.++|||||+||+|||+++.|+++|||||+|||+.|++-||+++|+++++.+||.++
T Consensus 17 ~f~d~ekp~~vR~sni~Aa~avadairTSLGPkGmDKMIq~~~gev~iTNDGaTILk~m~vlhP~akmLvelS~aQD~ea 96 (534)
T KOG0358|consen 17 AFKDKEKPEQVRFSNIQAARAVADAIRTSLGPKGMDKMIQTGKGEVIITNDGATILKQMNVLHPAAKMLVELSAAQDSEA 96 (534)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHhccCccchhhHhhcCCCcEEEecChHHHHHHHhhhChHHHHHHHhhhhccccc
Confidence 45567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccccCHHHHHHHHHHhhccCcCCCchH
Q 016953 90 GDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSD 169 (380)
Q Consensus 90 GDGttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~~~~~l~~va~t~l~sK~~~~~~~ 169 (380)
||||||||+|+++||+.+.+|+++|+||+.|...|+.|.+.++++|.++ +.|++-.|++.|.+-|.|+|+||+.+.++.
T Consensus 97 GDGTTsVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il~~m-~~~velsdre~Li~~atTsLnSKvvSq~s~ 175 (534)
T KOG0358|consen 97 GDGTTSVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDILDEM-SVPVELSDRESLIKSATTSLNSKVVSQYSS 175 (534)
T ss_pred cCCceEEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHhc-CCCcccCcHHHHHHHHHhHhhHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999999997 999988889999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeEeeEEEcccccCCCCCccccCceEEEEEeccccccc
Q 016953 170 FFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKM 249 (380)
Q Consensus 170 ~ls~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~~kIll~~~~L~~~~~ 249 (380)
.++.++++|+.++. ++......|+.+|+++|..||.++|+++++|++|++......-|++++++||-++.|.|..+|+
T Consensus 176 llapmAVdAV~kv~--dp~~~~nvdlkdIkivkklGgtvdDte~i~glvl~~~~~~~~gptriekAkIglIQF~iS~PKt 253 (534)
T KOG0358|consen 176 LLAPMAVDAVLKVI--DPENATNVDLKDIKIVKKLGGTVDDTELIKGLVLTQKASKSAGPTRIEKAKIGLIQFQISPPKT 253 (534)
T ss_pred ccchHHHHHHHhcc--CcccccccchhhhhhHHhhCCccchhhhhcceEEeeecccCCCcchhhhceeeEEEEEecCCCC
Confidence 99999999999884 2333346788999999999999999999999999998876668999999999999999999999
Q ss_pred ccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCC-----CHHHHHHHHHcCceEEeeCChhHHHHHHH
Q 016953 250 QLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGI-----DDMALKYFVEAGAIAVRRVRKEDMRHIAK 324 (380)
Q Consensus 250 ~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I-----~~~al~~l~~~~I~vv~~v~~~~l~~la~ 324 (380)
++..++.++++.+++.+.++|++|+..++++|++.|+|+++.|++| +|.|+|||.+-+|+|++.+.++|+|.+|+
T Consensus 254 dmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL~klkimvikdieRediefick 333 (534)
T KOG0358|consen 254 DMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLAKLKIMVIKDIEREDIEFICK 333 (534)
T ss_pred CcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHHHhCcEEEEccccHhhHHHHHh
Confidence 9999999999999999999999999999999999999999999987 89999999999999999999999999999
Q ss_pred HhCCeEccccccccCCcCCCCCCcccceeEEEEEE-cCeeEEEEEcCCC-CCeeEEeC
Q 016953 325 ATGATMVSTFADMEGEETFDSSLLGSADEVVEERV-ADDDVIMIKGTKT-TSAVCGLI 380 (380)
Q Consensus 325 ~tGa~ii~s~~~l~~~~~~~~~~lG~~~~v~~~~i-g~~~~~~f~g~~~-~~~~t~l~ 380 (380)
.+|++++++++. |++..+|+++.+++..- |+.+++.+.|+++ .++||||+
T Consensus 334 ~l~c~Pia~id~------f~~d~Lg~adlveE~~~~G~gkivk~tg~~n~g~tvsil~ 385 (534)
T KOG0358|consen 334 TLGCKPIADIDH------FTADKLGSADLVEETDSSGEGKIVKITGIQNAGRTVSILL 385 (534)
T ss_pred hcCCeecchhhh------cChhhcCcchhhhhcccCCCccEEEEEEeecCCCceEEEE
Confidence 999999999865 67889999999999744 5669999999999 67799884
No 18
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.8e-70 Score=556.65 Aligned_cols=355 Identities=32% Similarity=0.520 Sum_probs=330.9
Q ss_pred cccccH-HHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhcCC
Q 016953 13 ERQAGQ-DVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGD 91 (380)
Q Consensus 13 ~~~~~~-~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GD 91 (380)
++..|. +++.+|+.||..+++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++||
T Consensus 11 ~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~e~a~sqd~~~GD 90 (531)
T TIGR02346 11 RHMSGLEEAVIKNIEACKELSNITRTSLGPNGMNKMVINHLDKLFVTNDAATILRELEVQHPAAKLLVMASEMQENEIGD 90 (531)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEcCCCCEEEECcHHHHHHhccccCHHHHHHHHHHHHHhhhhCC
Confidence 455665 5999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcc-cccc-cCHHHHHHHHHHhhccCcCCCchH
Q 016953 92 GTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAV-KVEK-LGKDSLVNCAKTSMSSKLIGGDSD 169 (380)
Q Consensus 92 Gttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~-~v~~-~~~~~l~~va~t~l~sK~~~~~~~ 169 (380)
||||+|||+++|++++.+++++|+||+.|++||+.|++.++++|+++ ++ +++. .+.+.+.++++|+++||+.+. ++
T Consensus 91 GTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~-~~~~~~~~~~~~~l~~i~~tsl~sK~~~~-~~ 168 (531)
T TIGR02346 91 GTNLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEVLEEL-VVWEVEDVRNKKELIKALKASISSKQYGN-ED 168 (531)
T ss_pred ChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-ccccCCCCCCHHHHHHHHHHHhccccCch-HH
Confidence 99999999999999999999999999999999999999999999987 75 6632 357889999999999999988 99
Q ss_pred HHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeEeeEEEcccccCCCCCccccCceEEEEEeccccccc
Q 016953 170 FFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKM 249 (380)
Q Consensus 170 ~ls~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~~kIll~~~~L~~~~~ 249 (380)
+|++++++|+..+.+. +...++++.|+++++.|+++++|++++|++|++++. +||++++||||+++++|++++++
T Consensus 169 ~ls~l~~~Ai~~v~~~---~~~~~~~~~I~i~ki~G~s~~ds~li~Gi~~~~~~~--~~~k~i~n~kI~l~~~~l~~~~~ 243 (531)
T TIGR02346 169 FLAQLVAKACSTVMPK---NPENFNVDNIRVSKIMGGSISNSEVLKGMVFNREAE--GSVKRVKNAKVAVFSCPLDTATT 243 (531)
T ss_pred HHHHHHHHHHHHHhhc---CCCcCChhHeeEEEecCCChhhceeEeeeEEeccCC--CCceeccCCCEEEEecCcCCCcc
Confidence 9999999999998532 212477889999999999999999999999999854 57899999999999999999999
Q ss_pred ccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHhCCe
Q 016953 250 QLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGAT 329 (380)
Q Consensus 250 ~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa~ 329 (380)
+.+.++.+++++++.++.+.|+++++++++++++.|++||+++++|+|.+++||.++||+|+++++..+|+|||.+|||+
T Consensus 244 ~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~~I~av~~~~~~~l~~Ia~~tGa~ 323 (531)
T TIGR02346 244 ETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKYNIMVLKIPSKFELRRLCKTVGAT 323 (531)
T ss_pred cCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHCCcEEEecCCHHHHHHHHHHHCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccccccccCCcCCCCCCcccceeEEEEEEcCeeEEEEEcCC-CCCeeEEeC
Q 016953 330 MVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTK-TTSAVCGLI 380 (380)
Q Consensus 330 ii~s~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g~~-~~~~~t~l~ 380 (380)
++++++++ ++.++|+|+.|+++++|+++|.+|++|+ .+..|||+|
T Consensus 324 ii~~l~~~------~~~~LG~a~~v~~~~ig~~~~~~i~~~~~~~~~~tI~l 369 (531)
T TIGR02346 324 PLARLGAP------QPEEIGYVDSVYVSEIGGQKVTVFKQENGDSKISTIIL 369 (531)
T ss_pred EecccccC------CHhHccccceEEEEEECCEEEEEEEccCCCCCeEEEEE
Confidence 99998764 5567999999999999999999999998 588999985
No 19
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-71 Score=524.55 Aligned_cols=379 Identities=68% Similarity=0.979 Sum_probs=366.2
Q ss_pred CccccccccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccChHHHHHHH
Q 016953 1 MAISSQTLDILGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVE 80 (380)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~ 80 (380)
|.++..++...+++..|..+|..|..|+..+++++++||||.|++||++++.|++++||||+|||+.+.++||++|++++
T Consensus 1 ~~~~~~~~~~~ge~~sg~~vr~qnv~a~~~i~nivkss~GPvGldKmlvdd~Gdvt~TndgAtiL~~l~V~HPa~KiLve 80 (545)
T KOG0360|consen 1 RLEAKKPLLCKGERLSGERVRTQNVMAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILSLLEVEHPAAKVLVE 80 (545)
T ss_pred CCcccCCccccCCcccchhhhhhhhHHHHHHHHHHHhccCccchhhhccccccceEEeccHHHHHHhhhhcchHHHHHHH
Confidence 34667788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccccCHHHHHHHHHHhhc
Q 016953 81 LAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMS 160 (380)
Q Consensus 81 ~~~~~~~~~GDGttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~~~~~l~~va~t~l~ 160 (380)
.++.||+++|||||+|+++|++||+++.+|+..++||+.+++||+.|...+++++.+.++++++.+.+..|.++++|+++
T Consensus 81 laq~qd~evgDgttsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd~lg~~~Lin~~ktsms 160 (545)
T KOG0360|consen 81 LAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYITEGLSKPVDSLGTQILINLAKTSMS 160 (545)
T ss_pred HHHhccccccCCceEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHhhccceeehhhcchHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999998877999999999999999999999
Q ss_pred cCcCCCchHHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeEeeEEEcccccCCCCCccccCceEEEE
Q 016953 161 SKLIGGDSDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACL 240 (380)
Q Consensus 161 sK~~~~~~~~ls~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~~kIll~ 240 (380)
||+++...++|++++++|+..++..+.+|...+.++.++|.|-.|.+..||.+++|+.++...++..||.+++|+||+++
T Consensus 161 SK~i~~ds~~f~~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~eS~l~~GyaLnc~~asq~m~~~i~~~Kiacl 240 (545)
T KOG0360|consen 161 SKIIGMDSDFFTEMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQIESMLLPGYALNCSVASQMMPLRIKNAKIACL 240 (545)
T ss_pred ceecccchHHHHHHHHHHHHHHhhcccCCceeccccceeEEecCCccchhheeecceeeeccHhhhccccccccceeeeE
Confidence 99999999999999999999987666667777889999999999999999999999999999999999999999999999
Q ss_pred EecccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHH
Q 016953 241 DFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMR 320 (380)
Q Consensus 241 ~~~L~~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~ 320 (380)
++.|+..+.+....+.+.+|++++.+.+.|....++.+++|.+.|+|||+++++|||..++||.++|+++++|+.+++|+
T Consensus 241 d~~Lqk~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~~veagamAVrR~~k~dlk 320 (545)
T KOG0360|consen 241 DFTLQKTKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLKYFVEAGAMAVRRCKKEDLK 320 (545)
T ss_pred ecccccccccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHHcchhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeEccccccccCCcCCCCCCcccceeEEEEEEcCeeEEEEEcCCCCCeeEEeC
Q 016953 321 HIAKATGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAVCGLI 380 (380)
Q Consensus 321 ~la~~tGa~ii~s~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g~~~~~~~t~l~ 380 (380)
+|+++|||++++++.+++.++.|.+..+|+|+.|.+.+|+++.++++.|.+.. .|+++|
T Consensus 321 ~iakatGat~~sSla~l~geetf~~~~lG~a~evvqeri~dde~ilikg~ka~-~aSiIL 379 (545)
T KOG0360|consen 321 RIAKATGATLLSSLANLEGEETFEPASLGSADEVVQERIGDDELILIKGTKAT-SASIIL 379 (545)
T ss_pred HHHHhhCCeeeehhhccccccccChhhccchhHHHHHhcccceeEEeccCccc-eeeEEE
Confidence 99999999999999999999999999999999999999999999999999887 888875
No 20
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.8e-69 Score=545.46 Aligned_cols=328 Identities=30% Similarity=0.485 Sum_probs=309.3
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhcCCC
Q 016953 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDG 92 (380)
Q Consensus 13 ~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDG 92 (380)
++.+|.+++..|+.||..+++++++||||+||+|||+++.|+++|||||+|||++|+++||+++|++++|++|++++|||
T Consensus 6 ~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~a~l~~~~a~~qd~~~GDG 85 (484)
T cd03342 6 EVLRRGQALAVNISAAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHPTASMIARAATAQDDITGDG 85 (484)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEECCCCCEEEeccHHHHHHhccCcCHHHHHHHHHHHHhhhHhCCC
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccc-cCHHHHHHHHHHhhccCcCCCchHHH
Q 016953 93 TTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEK-LGKDSLVNCAKTSMSSKLIGGDSDFF 171 (380)
Q Consensus 93 ttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~-~~~~~l~~va~t~l~sK~~~~~~~~l 171 (380)
|||+++|+++|++++.+++++|+||+.|++||+.|.+.++++|+++ +.+++. .+.+.+.++|+|+++||+.+.++++|
T Consensus 86 TTt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~L~~~-s~~v~~~~~~~~l~~va~ts~~sk~~~~~~~~l 164 (484)
T cd03342 86 TTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESF-KVPVEIDTDRELLLSVARTSLRTKLHADLADQL 164 (484)
T ss_pred hhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHh-cccCCCCCCHHHHHHHHHHHhCcccchhHHHHH
Confidence 9999999999999999999999999999999999999999999997 888863 37889999999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeEeeEEEcccccCCCCCccccCceEEEEEeccccccccc
Q 016953 172 ANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQL 251 (380)
Q Consensus 172 s~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~~kIll~~~~L~~~~~~~ 251 (380)
++++++|+..+.+ ++. .+|.++|+++++.|+++.||++++|++|++++.+++||++++||||++++++|++++++.
T Consensus 165 ~~l~~~A~~~v~~---~~~-~~~~~~I~i~ki~ggs~~ds~~i~G~~~~~~~~~~~m~~~~~n~~Ill~~~~le~~~~~~ 240 (484)
T cd03342 165 TEIVVDAVLAIYK---PDE-PIDLHMVEIMQMQHKSDSDTKLIRGLVLDHGARHPDMPKRVENAYILTCNVSLEYEKTEV 240 (484)
T ss_pred HHHHHHHHHHHhh---cCC-ccChhHeEEEEecCCChhhceEEeeEEEecCCCCCCCCccccCceEEEEeCCCCCCcccc
Confidence 9999999999853 221 577889999999999999999999999999999999999999999999999999998887
Q ss_pred ceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHhCCeEc
Q 016953 252 GVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMV 331 (380)
Q Consensus 252 ~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa~ii 331 (380)
..++.++ ||+|+++|++.+++||.++||++++++++++|+|||++|||+++
T Consensus 241 ~~~~~~~-----------------------------lvi~~~~I~~~al~~l~~~~I~av~~~~~~~l~~ia~~tGa~ii 291 (484)
T cd03342 241 NSGFFYS-----------------------------VVINQKGIDPPSLDMLAKEGILALRRAKRRNMERLTLACGGVAM 291 (484)
T ss_pred CcEEEEE-----------------------------EEEeCCCccHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhCCEEe
Confidence 7666543 99999999999999999999999999999999999999999999
Q ss_pred cccccccCCcCCCCCCcccceeEEEEEEcCeeEEEEEcCCCCCeeEEeC
Q 016953 332 STFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAVCGLI 380 (380)
Q Consensus 332 ~s~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g~~~~~~~t~l~ 380 (380)
++++++ ++..+|+|+.|+++.+|+++|++|+||+.++.|||+|
T Consensus 292 ~~l~~~------~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~tI~l 334 (484)
T cd03342 292 NSVDDL------SPECLGYAGLVYERTLGEEKYTFIEGVKNPKSCTILI 334 (484)
T ss_pred cccccC------ChhhCcccceEEEEEECCeEEEEEECCCCCcEEEEEE
Confidence 998765 5668999999999999999999999999999999985
No 21
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.1e-68 Score=539.63 Aligned_cols=321 Identities=35% Similarity=0.556 Sum_probs=299.8
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhcCC
Q 016953 12 GERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGD 91 (380)
Q Consensus 12 ~~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GD 91 (380)
.++..|.+++..|+.||..+++++++||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|++++||
T Consensus 9 ~~~~~~~~~~~~ni~a~~~l~~~~~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q~~~~GD 88 (480)
T cd03337 9 TKRESGRKAQLGNIQAAKTVADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELSRTQDEEVGD 88 (480)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHhccCCCCcCceEeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHhHHHHhCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccccCHHHHHHHHHHhhccCcCCCchHHH
Q 016953 92 GTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFF 171 (380)
Q Consensus 92 Gttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~~~~~l~~va~t~l~sK~~~~~~~~l 171 (380)
||||+++|+++||+++.+++++|+||+.|++||+.|++.++++|+++ +++++..+.+.|.++++|+++||+.+.|.+.|
T Consensus 89 GTtt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~-~~~~~~~~~~~l~~i~~t~l~sK~~~~~~~~l 167 (480)
T cd03337 89 GTTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEI-SIPVDVNDRAQMLKIIKSCIGTKFVSRWSDLM 167 (480)
T ss_pred CcchhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-ccccccCCHHHHHHHHHHHhccCcchhHHHHH
Confidence 99999999999999999999999999999999999999999999997 88988668899999999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCccccCC-ceeEEecCCCCcccceeEeeEEEcccccCCCCCccccCceEEEEEecccccccc
Q 016953 172 ANLVVEAVQAVKMTNQRGEVKYPIK-GINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQ 250 (380)
Q Consensus 172 s~lv~~av~~~~~~~~~g~~~~~~~-~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~~kIll~~~~L~~~~~~ 250 (380)
++++++|+..+.+........+|++ +|+|++++|+++.||++++|++|++++.++.||++++||||++++|+|++
T Consensus 168 s~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds~li~Gvvi~k~~~~~~m~~~~~n~kIlll~~~Le~---- 243 (480)
T cd03337 168 CNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDVTHPKMRRRIENPRIVLLDCPLEY---- 243 (480)
T ss_pred HHHHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhcccccceEEeccCCCCCCCcEecCCCEEEEecCcce----
Confidence 9999999999964322211235554 59999999999999999999999999999999999999999999999875
Q ss_pred cceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHhCCeE
Q 016953 251 LGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATM 330 (380)
Q Consensus 251 ~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa~i 330 (380)
||+|+++|++.+++||.++||++++++++++|+|||++|||++
T Consensus 244 -------------------------------------lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~L~rIa~~tGa~i 286 (480)
T cd03337 244 -------------------------------------LVITEKGVSDLAQHYLVKAGITALRRVRKTDNNRIARACGATI 286 (480)
T ss_pred -------------------------------------EEEeCCCccHHHHHHHHHCCcEEEEeCCHHHHHHHHHHHCCEE
Confidence 9999999999999999999999999999999999999999999
Q ss_pred ccccccccCCcCCCCCCccc-ceeEEEEEEcCeeEEEEEcCCCCCeeEEeC
Q 016953 331 VSTFADMEGEETFDSSLLGS-ADEVVEERVADDDVIMIKGTKTTSAVCGLI 380 (380)
Q Consensus 331 i~s~~~l~~~~~~~~~~lG~-~~~v~~~~ig~~~~~~f~g~~~~~~~t~l~ 380 (380)
+++++++ +++.+|+ |+.++++++++++|++|+||+.+++|||+|
T Consensus 287 i~~~~~l------~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~~~~~TIll 331 (480)
T cd03337 287 VNRPEEL------TESDVGTGAGLFEVKKIGDEYFTFITECKDPKACTILL 331 (480)
T ss_pred ecchhhC------CHHHcCCcccEEEEEEeCCeEEEEEEcCCCCCEEEEEE
Confidence 9998764 5678999 788888889999999999999999999986
No 22
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=2.4e-65 Score=514.91 Aligned_cols=315 Identities=47% Similarity=0.689 Sum_probs=299.0
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhcCCCc
Q 016953 14 RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGT 93 (380)
Q Consensus 14 ~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDGt 93 (380)
...|.+++..|++||..+++++++||||+|++|||+++.|++++||||+||+++|+++||+++++++++++|++++||||
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~hp~a~ll~~~~~~~~~~~GDGT 82 (464)
T cd00309 3 REFGEEARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEVEHPAAKLLVEVAKSQDDEVGDGT 82 (464)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcccCCCcCcEEEEcCCCCeEEEccHHHHHHhccCcCHHHHHHHHHHHHHHhHhCCch
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccccCHHHHHHHHHHhhccCcCCCchHHHHH
Q 016953 94 TSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFAN 173 (380)
Q Consensus 94 tt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~~~~~l~~va~t~l~sK~~~~~~~~ls~ 173 (380)
||+++|+++|++++.+++++|+||+.|++||+.|++.++++|+++ +.+++..+.+.+.++++|+++||+.+.|++++++
T Consensus 83 tt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~-~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~l~~ 161 (464)
T cd00309 83 TTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEI-AVPIDVEDREELLKVATTSLNSKLVSGGDDFLGE 161 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHh-cCccCCCCHHHHHHHhHhcccccccccchHHHHH
Confidence 999999999999999999999999999999999999999999997 8886656789999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeEeeEEEcccccCCCCCccccCceEEEEEecccccccccce
Q 016953 174 LVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGV 253 (380)
Q Consensus 174 lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~~kIll~~~~L~~~~~~~~~ 253 (380)
++++|++.+.+.. + .++.+.|+|++.+||++.||++++|++|++++.+++|++.++||||++++++|++
T Consensus 162 l~~~Ai~~v~~~~--~--~~~~~~I~i~k~~gg~~~ds~li~Gi~~~~~~~~~~m~~~~~n~~Ili~~~~Le~------- 230 (464)
T cd00309 162 LVVDAVLKVGKEN--G--DVDLGVIRVEKKKGGSLEDSELVVGMVFDKGYLSPYMPKRLENAKILLLDCKLEY------- 230 (464)
T ss_pred HHHHHHHHhcccc--C--ccccceEEEEecCCCCcccceeeeeEEEecCCCCCCCceeecCceEEEEecCcce-------
Confidence 9999999985422 1 4677899999999999999999999999999999999999999999999999975
Q ss_pred EEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHhCCeEccc
Q 016953 254 QVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVST 333 (380)
Q Consensus 254 ~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa~ii~s 333 (380)
||+++++|++.+++||.++||+|++++++++|+|||++|||+++++
T Consensus 231 ----------------------------------lIi~~~~I~~~al~~L~~~~I~~v~~~~~~~L~~Ia~~tGa~ii~~ 276 (464)
T cd00309 231 ----------------------------------VVIAEKGIDDEALHYLAKLGIMAVRRVRKEDLERIAKATGATIVSR 276 (464)
T ss_pred ----------------------------------EEecCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEecc
Confidence 9999999999999999999999999999999999999999999999
Q ss_pred cccccCCcCCCCCCcccceeEEEEEEcCeeEEEEEcCCCCCeeEEeC
Q 016953 334 FADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAVCGLI 380 (380)
Q Consensus 334 ~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g~~~~~~~t~l~ 380 (380)
++++ ++..+|+|+.|+++++|+++|++|++|+.+++||++|
T Consensus 277 ~~~~------~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~TIll 317 (464)
T cd00309 277 LEDL------TPEDLGTAGLVEETKIGDEKYTFIEGCKGGKVATILL 317 (464)
T ss_pred cccC------CcccCccccEEEEEEEcCeeEEEEEecCCCCEEEEEE
Confidence 7664 5678999999999999999999999999999999985
No 23
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=1.2e-64 Score=513.49 Aligned_cols=334 Identities=39% Similarity=0.642 Sum_probs=315.3
Q ss_pred HHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhcCCCchhHHHHHHHHHHHHHHH
Q 016953 31 VANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDL 110 (380)
Q Consensus 31 l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDGttt~vlL~~~ll~~~~~l 110 (380)
|++++++||||+|++|||+++.|++++||||+||+++++++||+++++++++++|++++||||||+++|+++|++++.++
T Consensus 1 l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~~P~~~ll~~~~~~~~~~~GDGtts~vlL~~~ll~~~~~l 80 (485)
T PF00118_consen 1 LADIVKSSLGPKGRDKLIVNDSGKIIITNDGATILKSLKINHPIAKLLVEASKSQDEEVGDGTTSVVLLACELLRNALKL 80 (485)
T ss_dssp HHHHHGCCSSTTS-EEEEEESSSSEEEESSHHHHHHHSTBSSHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhcccCcCCCCCeEEEEcCCCCeEEEechhHHHHHhhhccchhhhHHHhHHHHHhhhccccceeeecccchhhhhhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccccCHHHHHHHHHHhhccCcCCCchHHHHHHHHHHHHHhhcccCCCC
Q 016953 111 VRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFANLVVEAVQAVKMTNQRGE 190 (380)
Q Consensus 111 i~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~~~~~l~~va~t~l~sK~~~~~~~~ls~lv~~av~~~~~~~~~g~ 190 (380)
+++|+||..|++||+.|++.++++|++. +++++..+ +.++++++|++++|+.+.|.++|++++++|++.+..
T Consensus 81 i~~gi~p~~I~~~~~~~~~~~~~~l~~~-s~~~~~~~-~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~------ 152 (485)
T PF00118_consen 81 IKKGIHPQEIIRGLQEALKIILEYLEKI-SIPINNDD-ESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKS------ 152 (485)
T ss_dssp HHTTS-HHHHHHHHHHHHHHHHHHHHHH-SEESTSTS-HHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTT------
T ss_pred hhccccccchhhhhhhhhhhhhhhhhhh-hccccccc-hhhhhhhcccccccccccchhhhhhhHHHHHHhhcc------
Confidence 9999999999999999999999999987 88887422 899999999999999999999999999999944421
Q ss_pred ccccCCceeEEecCCCCcccceeEeeEEEcccccCCCCCccccCceEEEEEecccccccccceEEEEcCHHHHHHHHHHH
Q 016953 191 VKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQRE 270 (380)
Q Consensus 191 ~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~~kIll~~~~L~~~~~~~~~~i~i~~~~~l~~~~~~E 270 (380)
.+++++++++++.|++++||++++|++|++++.+++|++++++|||++++++|+++++ .++++.++++++++.+.++|
T Consensus 153 -~~~~~~i~i~~i~g~~~~dS~li~Giv~~~~~~~~~~~~~~~~~~Ill~~~~L~~~~~-~~~~~~~~~~~~~~~~~~~e 230 (485)
T PF00118_consen 153 -NFDLDNIKIIKIPGGSISDSELINGIVLDKGFSSPNMPKKIENPKILLLNCPLEYSKS-FKSEIRITSPEQLDELSKQE 230 (485)
T ss_dssp -THHGGGEEEEEEESSSSGGEEEESEEEESSSBSSTTSBSEEESEEEEEESSEBSSCCH-STEEEEESSTHHHHHHHHHH
T ss_pred -cccccchhhhhhccccccccccccceeeeccccccccccccccceEEeeecccccccc-cccccchhhHHHHHHHHhhh
Confidence 1667789999999999999999999999999999999999999999999999999999 89999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHhCCeEccccccccCCcCCCCCCccc
Q 016953 271 ADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGS 350 (380)
Q Consensus 271 ~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa~ii~s~~~l~~~~~~~~~~lG~ 350 (380)
+++++++++++.+.|++||+++++|++.+++||.++||++++++++++|++||++|||+++++++++ +++.+|+
T Consensus 231 ~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~~i~~v~~~~l~~i~~~tg~~ii~~~~~l------~~~~lG~ 304 (485)
T PF00118_consen 231 KKYLKKILEKIINLGVNLIISQKSIDDEALQYLNKNGILVIRRVSKEDLERIARATGASIISSLDDL------SDEDLGF 304 (485)
T ss_dssp HHHHHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCTHEEESSEHHHHHHHHHHHHTSBEBSSCGGS------TGGGSEE
T ss_pred hhhhccccceEeeeccceeeeecccccccchhhhhhhhhccccchHHHHHhhhcccCCcEecccccc------cchhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999765 4567999
Q ss_pred ceeEEEEEEcCeeEEEEE--cCCCCCeeEEeC
Q 016953 351 ADEVVEERVADDDVIMIK--GTKTTSAVCGLI 380 (380)
Q Consensus 351 ~~~v~~~~ig~~~~~~f~--g~~~~~~~t~l~ 380 (380)
|+.++++.+++++|++|+ +|..+..||++|
T Consensus 305 ~~~v~~~~i~~~~~~~~~~~~~~~~~~~Till 336 (485)
T PF00118_consen 305 CKSVEEREIGNKKYIFIEGIGCLSSKICTILL 336 (485)
T ss_dssp EEEEEEEEETSSEEEEEEEHSESSSSEEEEEE
T ss_pred hhhhhhcccccccccccccccccccCceEEEe
Confidence 999999999999999999 699999999985
No 24
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.7e-64 Score=508.30 Aligned_cols=314 Identities=32% Similarity=0.546 Sum_probs=290.7
Q ss_pred ccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhcCCCchh
Q 016953 16 AGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTS 95 (380)
Q Consensus 16 ~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDGttt 95 (380)
.+.+++..|+.||..+++++++||||+||+|||+++.|++++||||+||+++|+++||+++|+++++++|++++||||||
T Consensus 5 ~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~~~~~~GDGTTt 84 (472)
T cd03341 5 GLEEAVLRNIEACKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQHPAAKLLVMASQMQEEEIGDGTNL 84 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEEcCCCCEEEeCcHHHHHHhccccCHHHHHHHHHHHHHhhhhCCChhh
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhccc-cc-ccCHHHHHHHHHHhhccCcCCCchHHHHH
Q 016953 96 VVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVK-VE-KLGKDSLVNCAKTSMSSKLIGGDSDFFAN 173 (380)
Q Consensus 96 ~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~-v~-~~~~~~l~~va~t~l~sK~~~~~~~~ls~ 173 (380)
+++|+++|++++.+++++|+||+.|++||+.|.+.++++|+++ +.+ ++ ..+.+.+.++++|+++||..+ ++++|++
T Consensus 85 ~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~-~~~~~~~~~~~~~l~~i~~t~l~sk~~~-~~~~l~~ 162 (472)
T cd03341 85 VVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEEL-VVYKIEDLRNKEEVSKALKTAIASKQYG-NEDFLSP 162 (472)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-hccccCCccCHHHHHHHHHHHhcccccc-hHHHHHH
Confidence 9999999999999999999999999999999999999999997 655 43 346778999999999999987 6899999
Q ss_pred HHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeEeeEEEcccccCCCCCccccCceEEEEEecccccccccce
Q 016953 174 LVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGV 253 (380)
Q Consensus 174 lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~~kIll~~~~L~~~~~~~~~ 253 (380)
++++|+.++.+.. .| .+++++|+|++++|++.+||++++|++|++.+. .++++++||||++++++|++
T Consensus 163 l~~~a~~~~~~~~-~~--~~~~~~i~i~ki~Gg~~~ds~lv~Giv~~~~~~--~~~~~~~n~~Ili~~~~Le~------- 230 (472)
T cd03341 163 LVAEACISVLPEN-IG--NFNVDNIRVVKILGGSLEDSKVVRGMVFKREPE--GSVKRVKKAKVAVFSCPFDI------- 230 (472)
T ss_pred HHHHHHHHHhhcc-CC--cCChhHeEEEEecCCCcccceEEeeEEEccccC--CCceeccCCcEEEEeccccC-------
Confidence 9999999985421 13 477889999999999999999999999987764 45688999999999999975
Q ss_pred EEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHhCCeEccc
Q 016953 254 QVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVST 333 (380)
Q Consensus 254 ~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa~ii~s 333 (380)
|++||+++++|++.+++||.++||++++++++++|+|||++|||+++++
T Consensus 231 -------------------------------g~~lvi~~~~I~d~al~~l~~~~I~av~~~~~~~Le~Ia~~tGa~ii~~ 279 (472)
T cd03341 231 -------------------------------GVNVIVAGGSVGDLALHYCNKYGIMVIKINSKFELRRLCRTVGATPLPR 279 (472)
T ss_pred -------------------------------CCeEEEECCCCCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEecc
Confidence 8999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcCCCCCCcccceeEEEEEEcCeeEEEEEcCCC-CCeeEEeC
Q 016953 334 FADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKT-TSAVCGLI 380 (380)
Q Consensus 334 ~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g~~~-~~~~t~l~ 380 (380)
++++ +++.+|+|+.|+++++|+++|++|++|+. +++|||+|
T Consensus 280 ~~~l------~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TI~l 321 (472)
T cd03341 280 LGAP------TPEEIGYCDSVYVEEIGDTKVVVFRQNKEDSKIATIVL 321 (472)
T ss_pred cccC------CHhHCCCceEEEEEEECCeeEEEEEccCCCCCeEEEEE
Confidence 8654 56789999999999999999999999988 89999985
No 25
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-65 Score=510.26 Aligned_cols=353 Identities=39% Similarity=0.567 Sum_probs=331.6
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhcCC
Q 016953 12 GERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGD 91 (380)
Q Consensus 12 ~~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GD 91 (380)
.++.+|.+++..|+.|+..+++++|+||||+||+|||+++.|+++|||||+||+++|+++||.++|++++|++||+++||
T Consensus 4 ~~~~~~~~a~~~~~~~~~~la~~vkttLGPkG~~k~l~~~~g~~~iTnDG~tIlkeielehp~akll~eva~~qd~e~GD 83 (524)
T COG0459 4 KERKFGEDARRSNIRAARALADAVKTTLGPKGRNKMLVDSGGDITITNDGVTILKEIELEHPGAKLLVEVAKKQDDEAGD 83 (524)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhccCCCcCceEEecCCCCEEEecCcceehhhhhccCchhHHHHHHHHHHHHHhcC
Confidence 35788999999999999999999999999999999999997799999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccccCHHHHHHHHHHhhccCcCCCchHHH
Q 016953 92 GTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFF 171 (380)
Q Consensus 92 Gttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~~~~~l~~va~t~l~sK~~~~~~~~l 171 (380)
||||++||+++||+++.+++.+|+||+.|++||+.|.+.++++|++. +++++..+.+. +++.|+++||..+++ +++
T Consensus 84 GTTtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~-a~~v~~~~~~~--~~~~t~v~sk~~~~~-~~i 159 (524)
T COG0459 84 GTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEI-AKPVSDSEEEL--KIAITSVASKSANSD-EEI 159 (524)
T ss_pred chHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-hccCCcchhhh--hhhhheeeeeeccCh-HHH
Confidence 99999999999999999999999999999999999999999999998 88887544444 889999999998877 999
Q ss_pred HHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeEeeEEEcc-cccCCCCC-ccccCceEEEEEeccccccc
Q 016953 172 ANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNA-FRAAQGMP-LRVAPAKIACLDFNLQKTKM 249 (380)
Q Consensus 172 s~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~-~~~~~~~~-~~~~~~kIll~~~~L~~~~~ 249 (380)
++++++|+.++... . .|.+.|.+++..|+...++++++|++|++ ..+++.|| +.++||||++++++|++.++
T Consensus 160 ~~lv~~Av~~v~~~---~---~d~~~i~~vk~~gg~~~e~~vveG~~~dkg~~s~~~~~~~~~e~~~Ili~d~~l~~~k~ 233 (524)
T COG0459 160 GELVVEAVEKVGKE---Q---SDLDGIIIVKESGGSETELEVVEGMVFDKGYLSPYFMPDKRLENPKILLLDKKLEIKKP 233 (524)
T ss_pred HHHHHHHHHHhccc---c---cccCCeEEEEecCCCccceEEEeeEEecCCccCCCCCCccccccceEEEEccccccccc
Confidence 99999999999431 1 16789999999999999999999999999 66677899 89999999999999999999
Q ss_pred ccceEEEEcCHHHHHHHHHHHH-HHHHHHHHHHHhCCCe-EEEeCCCCCHHHHHHHHHcCceEEeeCChhHH-HHHHHHh
Q 016953 250 QLGVQVLVTDPRELEKIRQREA-DMTKERIEKLLKAGAN-VILTTKGIDDMALKYFVEAGAIAVRRVRKEDM-RHIAKAT 326 (380)
Q Consensus 250 ~~~~~i~i~~~~~l~~~~~~E~-~~l~~~v~~i~~~gv~-lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l-~~la~~t 326 (380)
+.+.++.++++.++..|.++|+ +.+..+++++.+.|++ +++++++|+|.+++||.+.+|++++++.++++ ++|++++
T Consensus 234 ~l~~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~~~l~~~~ 313 (524)
T COG0459 234 ELPLEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLGERLAKLG 313 (524)
T ss_pred cCcceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcceecceecchhhHHHHHHcc
Confidence 9999999999999999999999 9999999999999999 99999999999999999999999999999999 8999999
Q ss_pred CCeEccccccccCCcCCCCCCccc--ceeEEEEEEcCeeEEEEEcCCC--CCeeEEeC
Q 016953 327 GATMVSTFADMEGEETFDSSLLGS--ADEVVEERVADDDVIMIKGTKT--TSAVCGLI 380 (380)
Q Consensus 327 Ga~ii~s~~~l~~~~~~~~~~lG~--~~~v~~~~ig~~~~~~f~g~~~--~~~~t~l~ 380 (380)
||++++.+.++ .+..+|. |+.+++.+++++.+.+|++|+. +++|||++
T Consensus 314 ga~~v~~~~d~------t~~~~G~~~~~~ve~~~~~~~~~~~~~~~~~~~~~~~tI~v 365 (524)
T COG0459 314 GAKIVSVLKDL------TTIVLGEGAAGLVEETKTGDYDMEKLQERKAKAGGVATILV 365 (524)
T ss_pred CceEEeecccC------ceeecCccccceEEEeeccchhhhhhhhhhhcCCCeEEEEE
Confidence 99999998764 5678999 9999999999999999999996 88999985
No 26
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-66 Score=485.33 Aligned_cols=361 Identities=30% Similarity=0.486 Sum_probs=344.1
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhc
Q 016953 10 ILGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREV 89 (380)
Q Consensus 10 ~~~~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~ 89 (380)
....+..|..++..|++|++++++++++|+||+.|.||+.++.|.++.||||..||+++++.||+|+-+.+++.+||+++
T Consensus 10 ~~~~re~g~kvq~~ni~aak~iadvirtclgp~am~kmlld~~g~i~~tndg~ailrei~Vahpaaksmiel~rtqdeev 89 (527)
T KOG0364|consen 10 KNTKRESGRKVQLGNIQAAKAIADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELSRTQDEEV 89 (527)
T ss_pred cccCcCccccccccchhhHHHHHHHHHHhcChHHHHHHhhccCCceEEecCcHHHHHHHhhcCcchhhHhhhhhcccccc
Confidence 34457889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccccCHHHHHHHHHHhhccCcCCCchH
Q 016953 90 GDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSD 169 (380)
Q Consensus 90 GDGttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~~~~~l~~va~t~l~sK~~~~~~~ 169 (380)
|||||||++|++++|.++..++++|+||+.|+++|.+|+..++..+.++ +.++|..+...+..++++++.+|+.+.|++
T Consensus 90 gdgttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~~~-~~~~d~~~~~km~~vi~~~v~tk~~~~~~~ 168 (527)
T KOG0364|consen 90 GDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDKI-SIPVDVKDQAKMLRVINSSVGTKFNSRWSD 168 (527)
T ss_pred cCCceeeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHHhh-cccCCcccHHHHHhhhhhhhhhhhhhhhcc
Confidence 9999999999999999999999999999999999999999999999987 999998889999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCccccC-CceeEEecCCCCcccceeEeeEEEcccccCCCCCccccCceEEEEEecccccc
Q 016953 170 FFANLVVEAVQAVKMTNQRGEVKYPI-KGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTK 248 (380)
Q Consensus 170 ~ls~lv~~av~~~~~~~~~g~~~~~~-~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~~kIll~~~~L~~~~ 248 (380)
.++.++.+|+..+... +|. .+|+ .+.++.|++||.+.+|++++|+.++++..|+.|++.++||||++++|||+|.+
T Consensus 169 ~~~~lal~avk~V~~~--~g~-e~dik~y~kveKvpgg~l~~s~vl~Gv~~nkdv~Hpkmrr~IenprivLlD~~Leykk 245 (527)
T KOG0364|consen 169 LICNLALDAVKTVGVE--NGR-EIDIKRYAKVEKVPGGLLEDSCVLKGVMINKDVTHPKMRRAIENPRIVLLDCPLEYKK 245 (527)
T ss_pred hhhhHHHHHHHHhhhc--cCc-eechhhhccccccCcccccccceecceeeccccCcHHHHHHhhcCcEEEecCCccCCC
Confidence 9999999999998632 343 4555 58899999999999999999999999999999999999999999999999999
Q ss_pred cccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHhCC
Q 016953 249 MQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGA 328 (380)
Q Consensus 249 ~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa 328 (380)
.++++.+.+.-.+++....+-|+++++.+++.|....++||+++++++|.|++||.++||++++|+++.|-.|++++|||
T Consensus 246 GeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k~~iT~~rr~rKtDn~ria~acga 325 (527)
T KOG0364|consen 246 GESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLKANITAIRRLRKTDNNRIARACGA 325 (527)
T ss_pred CccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccchhHHHHHHHHhcCchhhhhhhccccchhhhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEccccccccCCcCCCCCCccc-ceeEEEEEEcCeeEEEEEcCCCCCeeEEeC
Q 016953 329 TMVSTFADMEGEETFDSSLLGS-ADEVVEERVADDDVIMIKGTKTTSAVCGLI 380 (380)
Q Consensus 329 ~ii~s~~~l~~~~~~~~~~lG~-~~~v~~~~ig~~~~~~f~g~~~~~~~t~l~ 380 (380)
+++++.+++ .+.+.|+ |+.|++.++|+++|.||..|+.|++||||+
T Consensus 326 ~iv~rpedl------~e~dvGt~agLf~~kK~gdeyf~f~~~Ck~pkaCtill 372 (527)
T KOG0364|consen 326 RIVNRPEDL------PERDVGTGAGLFEVKKIGDEYFTFFTDCKEPKACTILL 372 (527)
T ss_pred eeccChhhC------chhccCcccceeeeeccCchhhhhhhhcCCCcceEEEe
Confidence 999998764 6778997 889999999999999999999999999996
No 27
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-64 Score=463.08 Aligned_cols=353 Identities=36% Similarity=0.575 Sum_probs=329.2
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecC--CCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhcC
Q 016953 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDD--IGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVG 90 (380)
Q Consensus 13 ~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~--~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~G 90 (380)
+..+|+.++.+.+.++..+.+++||+|||+||+||++.. .|.+.+||||+|||+++.+.+|+||++++.++-||+++|
T Consensus 12 ~eErge~ArlssfvGaiaigDlvKsTLGPKGMdKiL~s~~~~~~v~VTNDGAtILksi~vDnpaAkvLv~~S~vQD~EvG 91 (527)
T KOG0363|consen 12 TEERGENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSTGRAGTVMVTNDGATILKSIGVDNPAAKVLVDISKVQDDEVG 91 (527)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhccCcchHHHHHhccCCCCceEEecchHHHHHhcCCCCchhhheeccccccccccC
Confidence 568999999999999999999999999999999999965 367999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccc---cCHHHHHHHHHHhhccCcCCCc
Q 016953 91 DGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEK---LGKDSLVNCAKTSMSSKLIGGD 167 (380)
Q Consensus 91 DGttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~---~~~~~l~~va~t~l~sK~~~~~ 167 (380)
||||||++|+++||++|.+|+...+||..|+.|||.|.+.|.+.|.+. ++.-.. .-++.|+++|+|.|+||+.+.+
T Consensus 92 DGTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~-s~dns~~~~kfr~DLl~iarTTL~SKiLsq~ 170 (527)
T KOG0363|consen 92 DGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEALTKS-SIDNSSDKEKFREDLLKIARTTLSSKILSQD 170 (527)
T ss_pred CCceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHh-hhhccCchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999775 443211 1167899999999999999999
Q ss_pred hHHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeEeeEEEcccccCCCCCccccCceEEEEEeccccc
Q 016953 168 SDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKT 247 (380)
Q Consensus 168 ~~~ls~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~~kIll~~~~L~~~ 247 (380)
.++|++|+++|+.+++. +-+++.|+|+|+.||++.||++-+|+++++.+. -+.|++++|+||++-|.+++..
T Consensus 171 kehFaelavdAV~rLkG-------s~nL~~IqIIK~~Gg~l~dSfLDeGFlL~K~ig-v~qpkriena~iLIANT~mDtD 242 (527)
T KOG0363|consen 171 KEHFAELAVDAVLRLKG-------STNLEAIQIIKKLGGKLEDSFLDEGFLLDKKIG-VNQPKRIENAKILIANTPMDTD 242 (527)
T ss_pred HHHHHHHHHHHHHHhcC-------CCCccceeeehhcCCccccccccccceeccccC-CCCcccccccceEEecCCCccc
Confidence 99999999999999863 235789999999999999999999999999875 4679999999999999999999
Q ss_pred cccc-ceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHh
Q 016953 248 KMQL-GVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKAT 326 (380)
Q Consensus 248 ~~~~-~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~t 326 (380)
|.+. .+.+.+.+...+.++...|++.++.++++|.++|+|+.+..+=|.+.-.|+|...||+++...+.+-+||++.+|
T Consensus 243 KvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~dagi~aIEHADFdGiERLalvt 322 (527)
T KOG0363|consen 243 KVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFINRQLIYNYPEQLFADAGIMAIEHADFDGIERLALVT 322 (527)
T ss_pred ceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhhcCcceeecccchhHHHHhhcc
Confidence 9885 788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEccccccccCCcCCCCCCcccceeEEEEEEcCeeEEEEEcCCCCCeeEEeC
Q 016953 327 GATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAVCGLI 380 (380)
Q Consensus 327 Ga~ii~s~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g~~~~~~~t~l~ 380 (380)
|+.|+++++++ +...+|+|+.+++..+|+++++.|+||+-.-+|||+|
T Consensus 323 GGeI~STFd~p------~~~klG~C~~IeeimiGed~li~FSGv~~GeActIVl 370 (527)
T KOG0363|consen 323 GGEIVSTFDNP------ELVKLGECDLIEEIMIGEDKLIKFSGVKLGEACTIVL 370 (527)
T ss_pred cceeeeccCCc------chhccccchhhHHHhcCccceeeecccccccceEEEE
Confidence 99999999875 4568999999999999999999999999999999975
No 28
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-61 Score=456.66 Aligned_cols=358 Identities=28% Similarity=0.453 Sum_probs=324.4
Q ss_pred cccccccc-cccH-HHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccChHHHHHHHHHHH
Q 016953 7 TLDILGER-QAGQ-DVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAEL 84 (380)
Q Consensus 7 ~~~~~~~~-~~~~-~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~ 84 (380)
+++.++.+ .+|. ++...|++||+++++++||+|||+||+||++|+.|++.+|||.+||+++++++||++|+++++++.
T Consensus 12 q~~k~g~r~~~~~e~~v~~ni~a~~ela~~~rs~yGpng~nK~vvnh~~k~~~TndaatIlrelev~HPaakllv~a~~~ 91 (537)
T KOG0362|consen 12 QMLKEGARSPSGEEEAVIRNIAAVRELANVIRSAYGPNGRNKMVVNHLGKTFVTNDAATILRELEVEHPAAKLLVEATQM 91 (537)
T ss_pred hHHhccccCcccchHHHHHHHHHHHHHHHHHHhhcCCCCcceeeecccceEEEcCChHHHHHHhhccCcHHHHHHHHHHH
Confidence 66677754 4555 788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccccCHHHHHHHHHHhhccCcC
Q 016953 85 QDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLI 164 (380)
Q Consensus 85 ~~~~~GDGttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~~~~~l~~va~t~l~sK~~ 164 (380)
|+.+.||||++||+|+++||++|.+|+..|++|..|++||+.|.+.+++.|+++...... |.+.-..++++++.||.+
T Consensus 92 q~~~iGDgtnfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~l~~lv~~~~~--d~~d~~~~~rs~i~skq~ 169 (537)
T KOG0362|consen 92 QEEEIGDGTNFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEILPELVVQSIG--DLEDKEWALRSVIMSKQY 169 (537)
T ss_pred HHHhhCCCceEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHhcc--cccChHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999998433322 222223788999999876
Q ss_pred CCchHHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeEeeEEEcccccCCCCCccccCceEEEEEecc
Q 016953 165 GGDSDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNL 244 (380)
Q Consensus 165 ~~~~~~ls~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~~kIll~~~~L 244 (380)
.+ .+++++++++|...+.+. + .|+.++|+++|+.|+++++|+++.|++|++.+. +-++..+.+||++++||+
T Consensus 170 ~~-ed~l~~lVa~ac~si~p~---~--~FnvdnIrVcKi~Gg~l~~S~Vv~GmVfkr~~e--G~v~~ak~arvAvf~cP~ 241 (537)
T KOG0362|consen 170 GN-EDFLTKLVAKACVSILPL---M--SFNVDNIRVCKILGGGLEDSCVVCGMVFKRDPE--GEVKSAKDARVAVFACPF 241 (537)
T ss_pred ch-HHHHHHHHHHHHHhhccc---c--cccccceEEEEEecCCcccceeeEEEEeccccC--CcccccccceeEEEecCC
Confidence 64 689999999999999764 2 288999999999999999999999999998875 344777899999999999
Q ss_pred cccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHH
Q 016953 245 QKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAK 324 (380)
Q Consensus 245 ~~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~ 324 (380)
+...++.++++.+++++++.+|.+.|++.+..+++.|.+.|+++|++.+.|++.+++||++++|++++.-++.||+|+|+
T Consensus 242 d~~~TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhflnky~ImVlqi~Sk~eLrrlcr 321 (537)
T KOG0362|consen 242 DIAQTETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHFLNKYKIMVLQINSKFDLRRLCR 321 (537)
T ss_pred CcccccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhhhhccccEEEEEeccHhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCeEccccccccCCcCCCCCCcccceeEEEEEEcCeeEEEEEc-CCCCCeeEEeC
Q 016953 325 ATGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKG-TKTTSAVCGLI 380 (380)
Q Consensus 325 ~tGa~ii~s~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g-~~~~~~~t~l~ 380 (380)
..||.+++++..+ .+..+|+|+++..+++|+..++.|.. |...+..||+|
T Consensus 322 tvGA~~l~rl~~P------~~~~lG~~d~V~~~EiG~~~v~vF~~e~~~~~~~TvVL 372 (537)
T KOG0362|consen 322 TVGATALPRLFPP------APEELGYCDSVSTQEIGDTLVVVFRWESTGTRVATVVL 372 (537)
T ss_pred HcCCccchhccCC------CCccccccceeeeeecCCceEEEEeeccCCCceeEEEE
Confidence 9999999999764 45679999999999999999999985 44566778764
No 29
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=5.5e-58 Score=467.66 Aligned_cols=310 Identities=24% Similarity=0.386 Sum_probs=277.3
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccCh----HHHHHHHHHHHhhhh
Q 016953 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHP----AAKVLVELAELQDRE 88 (380)
Q Consensus 13 ~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP----~~~ll~~~~~~~~~~ 88 (380)
+...|.+++..|+.|+..+++++++||||+||+|||+++.|+++|||||+||+++|+++|| .++|+++++++|+++
T Consensus 16 ~~~~~~~a~~~~i~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDG~TIlk~i~~~~p~~~~~a~ll~~~a~~qd~e 95 (555)
T PTZ00114 16 EIRFGDEARQSLLKGIERLADAVAVTLGPKGRNVIIEQEYGSPKITKDGVTVAKAIEFSDRFENVGAQLIRQVASKTNDK 95 (555)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCcEEEECCCCCeEEeeChHHHHHhcCcCCcchhHHHHHHHHHHHhhccc
Confidence 4678899999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccccCHHHHHHHHHHhhccCcCCCch
Q 016953 89 VGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDS 168 (380)
Q Consensus 89 ~GDGttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~~~~~l~~va~t~l~sK~~~~~~ 168 (380)
+||||||+++||++||+++.+++++|+||..|++||+.|.+.++++|+++ +.+++ +.+.+.++|+|+++ ++
T Consensus 96 vGDGTTtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~-s~~v~--~~~~l~~va~ts~~------~~ 166 (555)
T PTZ00114 96 AGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQ-SRPVK--TKEDILNVATISAN------GD 166 (555)
T ss_pred cCCcccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHh-ccCCC--CHHHHHHHHHHHcC------Ch
Confidence 99999999999999999999999999999999999999999999999997 88886 67889999999864 37
Q ss_pred HHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccc-eeEeeEEEcccccCCCC-------CccccCceEEEE
Q 016953 169 DFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDS-YFLNGYALNAFRAAQGM-------PLRVAPAKIACL 240 (380)
Q Consensus 169 ~~ls~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS-~li~Giv~~~~~~~~~~-------~~~~~~~kIll~ 240 (380)
+++++++++|+..+. .+| .|.+..|+++.+| ++++|++|++++.+++| ++.++||+|+++
T Consensus 167 ~~l~~li~eAv~~vg---~~g---------~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~ 234 (555)
T PTZ00114 167 VEIGSLIADAMDKVG---KDG---------TITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVT 234 (555)
T ss_pred HHHHHHHHHHHHHhC---cCC---------cEEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEE
Confidence 889999999999883 333 1556789999998 89999999999998875 788999999999
Q ss_pred EecccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcC------ceEEee-
Q 016953 241 DFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAG------AIAVRR- 313 (380)
Q Consensus 241 ~~~L~~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~------I~vv~~- 313 (380)
+++|+. ++ .+.++++++.+.|++|+|++++|++.|+++|..++ |+++++
T Consensus 235 d~~L~~-------------~~-----------~i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~ 290 (555)
T PTZ00114 235 DKKISS-------------IQ-----------SILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAP 290 (555)
T ss_pred cCCCCC-------------HH-----------HHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecC
Confidence 999862 22 26777899999999999999999999999999996 999987
Q ss_pred ----CChhHHHHHHHHhCCeEcccc-ccccCCcCCCCCCcccceeEEEEEEcCeeEEEEEcCC
Q 016953 314 ----VRKEDMRHIAKATGATMVSTF-ADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTK 371 (380)
Q Consensus 314 ----v~~~~l~~la~~tGa~ii~s~-~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g~~ 371 (380)
+++++|+|||.+|||+++++. ..+.+ +++.+.++|+|+.|++++ +++++|+||.
T Consensus 291 ~~g~~~~~~l~~la~~tG~~~i~~~~~~~~l-~~~~~~~LG~a~~v~~~~---~~~~~~~~~~ 349 (555)
T PTZ00114 291 GFGDNRKDILQDIAVLTGATVVSEDNVGLKL-DDFDPSMLGSAKKVTVTK---DETVILTGGG 349 (555)
T ss_pred CCCcchHHHHHHHHHHhCCEEecccccccCc-ccCCHHHcCCCceEEEEe---ceEEEEeCCC
Confidence 778999999999999999997 22222 235667899999999887 5677777776
No 30
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=3.3e-58 Score=467.21 Aligned_cols=312 Identities=22% Similarity=0.312 Sum_probs=274.3
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccCh----HHHHHHHHHHHhhhhc
Q 016953 14 RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHP----AAKVLVELAELQDREV 89 (380)
Q Consensus 14 ~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP----~~~ll~~~~~~~~~~~ 89 (380)
..+|.+++..|+.|+..+++++++||||+||+|||+++.|+++|||||+||+++|+++|| +++|++++|++||+++
T Consensus 5 ~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDGaTIlk~i~~~hp~~~~~a~ll~~~a~~qd~e~ 84 (542)
T PRK12849 5 IKFDEEARRALERGVNKLADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAKEIELEDPFENLGAQLVKEVASKTNDVA 84 (542)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCccHhHHHHHHHHHHHhcCCcc
Confidence 467899999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccccCHHHHHHHHHHhhccCcCCCchH
Q 016953 90 GDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSD 169 (380)
Q Consensus 90 GDGttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~~~~~l~~va~t~l~sK~~~~~~~ 169 (380)
||||||+++|+++||+++.+++++|+||+.|++||+.|++.++++|+++ +.+++ +.+.+.++|+|+. ++++
T Consensus 85 GDGTTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~-s~~~~--~~~~l~~va~ts~------~~~~ 155 (542)
T PRK12849 85 GDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKAL-ARPVS--GSEEIAQVATISA------NGDE 155 (542)
T ss_pred CCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHh-ccCCC--CHHHHHHHHHHhc------CChH
Confidence 9999999999999999999999999999999999999999999999997 88886 6778999999885 3689
Q ss_pred HHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCccc-ceeEeeEEEcccccCCCC-------CccccCceEEEEE
Q 016953 170 FFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARD-SYFLNGYALNAFRAAQGM-------PLRVAPAKIACLD 241 (380)
Q Consensus 170 ~ls~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~d-S~li~Giv~~~~~~~~~~-------~~~~~~~kIll~~ 241 (380)
++++++++|+..+. .+|. ++ + ..|++.+| +++++|++|++++.+++| ++.++||+|++++
T Consensus 156 ~l~~lv~~Av~~v~---~~g~--i~-----i--~~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d 223 (542)
T PRK12849 156 EIGELIAEAMEKVG---KDGV--IT-----V--EESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTD 223 (542)
T ss_pred HHHHHHHHHHHHhc---cCCc--Ee-----E--EeCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeec
Confidence 99999999999883 3332 22 2 26888875 899999999999998864 7889999999999
Q ss_pred ecccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHc------CceEEeeCC
Q 016953 242 FNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEA------GAIAVRRVR 315 (380)
Q Consensus 242 ~~L~~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~------~I~vv~~v~ 315 (380)
+.++ ++++ +.++++++.+.|++|||++++|++.|+++|.++ +|+++++++
T Consensus 224 ~~i~-------------~~~~-----------~~~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~ 279 (542)
T PRK12849 224 KKIS-------------SLQD-----------LLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPG 279 (542)
T ss_pred CCcC-------------CHHH-----------HHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCC
Confidence 9653 3333 455789999999999999999999999999999 999999877
Q ss_pred -----hhHHHHHHHHhCCeEccccccccCCcCCCCCCcccceeEEEEEEcCeeEEEEEcCCCCC
Q 016953 316 -----KEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTS 374 (380)
Q Consensus 316 -----~~~l~~la~~tGa~ii~s~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g~~~~~ 374 (380)
+++|+|||++|||+++++...+.. +++++.++|+|+.|++. .++|++|+||+.+.
T Consensus 280 ~~~~r~~~l~~ia~~tGa~~v~~~~~~~~-~~~~~~~LG~~~~v~~~---~~~~~~i~g~~~~~ 339 (542)
T PRK12849 280 FGDRRKAMLEDIAILTGGTVISEDLGLKL-EEVTLDDLGRAKRVTIT---KDNTTIVDGAGDKE 339 (542)
T ss_pred ccchhHhHHHHHHHHhCCEEecccccCCc-ccCCHHHCceeeEEEEe---eeeEEEEeCCCCHH
Confidence 556999999999999994221111 23466789999999965 48999999998863
No 31
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=5.6e-58 Score=465.53 Aligned_cols=309 Identities=24% Similarity=0.368 Sum_probs=278.4
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccCh----HHHHHHHHHHHhhhh
Q 016953 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHP----AAKVLVELAELQDRE 88 (380)
Q Consensus 13 ~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP----~~~ll~~~~~~~~~~ 88 (380)
....|.+++..|+.|+..+++++++||||+||+|||+++.|+++|||||+||+++|+++|| .++|+++++++|+++
T Consensus 4 ~~~~~~~a~~~~i~a~~~ia~~v~ttLGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~e~a~~qd~e 83 (542)
T PRK00013 4 DIKFGEDARRKLLRGVNKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDV 83 (542)
T ss_pred hhhchHHHHHHHHHHHHHHHHHhhccCCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCchhhHHHHHHHHHHHhcCcc
Confidence 3467899999999999999999999999999999999999999999999999999999999 699999999999999
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccccCHHHHHHHHHHhhccCcCCCch
Q 016953 89 VGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDS 168 (380)
Q Consensus 89 ~GDGttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~~~~~l~~va~t~l~sK~~~~~~ 168 (380)
+||||||+++|+++||+++.+++++|+||+.|++||+.|++.++++|+++ +++++ +.+.+.++|.|+++ ++
T Consensus 84 ~GDGTTtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~-a~~~~--~~~~l~~va~ts~~------~~ 154 (542)
T PRK00013 84 AGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKI-SKPVE--DKEEIAQVATISAN------GD 154 (542)
T ss_pred cCCccchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh-ccCCC--CHHHHHHHHHhccc------ch
Confidence 99999999999999999999999999999999999999999999999997 88886 68889999998753 68
Q ss_pred HHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeEeeEEEcccccCCCC-------CccccCceEEEEE
Q 016953 169 DFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGM-------PLRVAPAKIACLD 241 (380)
Q Consensus 169 ~~ls~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~-------~~~~~~~kIll~~ 241 (380)
+.+++++++|+..+. .+| .|.|.+..| ...+|++++|++|++++.+++| ++.++||+|+++|
T Consensus 155 ~~ls~lv~~Av~~v~---~~g-------~i~i~~~~~-~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d 223 (542)
T PRK00013 155 EEIGKLIAEAMEKVG---KEG-------VITVEESKG-FETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITD 223 (542)
T ss_pred HHHHHHHHHHHHHhC---cCC-------cEEEEEcCC-CCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEEEc
Confidence 999999999999883 223 266766676 7789999999999999998866 7889999999999
Q ss_pred ecccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcC------ceEEeeCC
Q 016953 242 FNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAG------AIAVRRVR 315 (380)
Q Consensus 242 ~~L~~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~------I~vv~~v~ 315 (380)
+.+. ++++ +.++++++.+.|++|||++++|++.|+++|..++ |+++++++
T Consensus 224 ~~i~-------------~~~~-----------l~~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~ 279 (542)
T PRK00013 224 KKIS-------------NIQD-----------LLPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPG 279 (542)
T ss_pred CccC-------------CHHH-----------HHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCC
Confidence 9653 3333 4577899999999999999999999999999997 99999876
Q ss_pred -----hhHHHHHHHHhCCeEcc-----ccccccCCcCCCCCCcccceeEEEEEEcCeeEEEEEcCCCCC
Q 016953 316 -----KEDMRHIAKATGATMVS-----TFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTS 374 (380)
Q Consensus 316 -----~~~l~~la~~tGa~ii~-----s~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g~~~~~ 374 (380)
+++|+|||.+|||++++ ++++ ++++++|+|+.|++. .++|++|+||+.++
T Consensus 280 ~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~------~~~~~LG~~~~v~~~---~~~~~~i~~~~~~~ 339 (542)
T PRK00013 280 FGDRRKAMLEDIAILTGGTVISEELGLKLED------ATLEDLGQAKKVVVT---KDNTTIVDGAGDKE 339 (542)
T ss_pred cccchhhhHHHHHHHcCCEEecccccCCccc------CCHHHCCeeeEEEEe---cCEEEEEeCCCCHH
Confidence 88999999999999999 4544 466789999999976 48999999998876
No 32
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=5.7e-58 Score=464.21 Aligned_cols=311 Identities=25% Similarity=0.366 Sum_probs=275.5
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccCh----HHHHHHHHHHHhhhhc
Q 016953 14 RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHP----AAKVLVELAELQDREV 89 (380)
Q Consensus 14 ~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP----~~~ll~~~~~~~~~~~ 89 (380)
..+|.+++..|+.|+..+++++++||||+||+|||+++.|+++|||||+||+++|+++|| .++|+++++++|++++
T Consensus 3 ~~~g~~a~~~~i~~~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~a~ll~~~a~~qd~e~ 82 (520)
T cd03344 3 IKFGEEARKALLRGVNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDVA 82 (520)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEECCCCCeEEEecHHHHHHHcccCCcchhHHHHHHHHHHhhhcccc
Confidence 357889999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccccCHHHHHHHHHHhhccCcCCCchH
Q 016953 90 GDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSD 169 (380)
Q Consensus 90 GDGttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~~~~~l~~va~t~l~sK~~~~~~~ 169 (380)
||||||+++|+++||+++.+++++|+||..|++||+.|.+.++++|+++ +++++ +.+.+.++|+|++++ ++
T Consensus 83 GDGTTtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~-~~~i~--~~~~l~~va~ts~~~------~~ 153 (520)
T cd03344 83 GDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKL-SKPVK--TKEEIAQVATISANG------DE 153 (520)
T ss_pred CCCcchHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHh-ccCCC--CHHHHHHHHHHhcCC------hH
Confidence 9999999999999999999999999999999999999999999999997 88986 688999999999853 79
Q ss_pred HHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCccc-ceeEeeEEEcccccCCCC---C----ccccCceEEEEE
Q 016953 170 FFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARD-SYFLNGYALNAFRAAQGM---P----LRVAPAKIACLD 241 (380)
Q Consensus 170 ~ls~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~d-S~li~Giv~~~~~~~~~~---~----~~~~~~kIll~~ 241 (380)
++++++++|+..+. .+|. |.+ ..|++..| +++++|++|++++.+++| | ++++||+|++++
T Consensus 154 ~l~~lv~~A~~~v~---~~~~-------i~v--~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d 221 (520)
T cd03344 154 EIGELIAEAMEKVG---KDGV-------ITV--EEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTD 221 (520)
T ss_pred HHHHHHHHHHHHhc---cCCc-------EEE--EeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEEC
Confidence 99999999999873 2232 223 58999988 799999999999998876 3 578999999999
Q ss_pred ecccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCc------eEEeeC-
Q 016953 242 FNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGA------IAVRRV- 314 (380)
Q Consensus 242 ~~L~~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I------~vv~~v- 314 (380)
++|. ++++ +.++++++.+.|++|||++++|++.|+++|.++|| +++++.
T Consensus 222 ~~l~-------------~~~~-----------l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~ 277 (520)
T cd03344 222 KKIS-------------SIQE-----------LLPILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPG 277 (520)
T ss_pred CCCC-------------CHHH-----------HHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCC
Confidence 9963 2333 45578999999999999999999999999999998 898866
Q ss_pred ----ChhHHHHHHHHhCCeEccccccccCCcCCCCCCcccceeEEEEEEcCeeEEEEEcCCCC
Q 016953 315 ----RKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTT 373 (380)
Q Consensus 315 ----~~~~l~~la~~tGa~ii~s~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g~~~~ 373 (380)
++++|+|||++|||+++++..+... ++++++++|+|+.|++.+ ++|++|+||+.+
T Consensus 278 ~~~~~~~~l~~la~~tGa~~~~~~~~~~~-~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~ 336 (520)
T cd03344 278 FGDRRKAMLEDIAILTGGTVISEELGLKL-EDVTLEDLGRAKKVVVTK---DDTTIIGGAGDK 336 (520)
T ss_pred CCcccHHHHHHHHHHhCCEEecccccCCc-ccCCHHHCCcceEEEEee---ceEEEEeCCCCH
Confidence 8999999999999999993321111 234566899999999766 899999999886
No 33
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.8e-60 Score=441.04 Aligned_cols=349 Identities=28% Similarity=0.470 Sum_probs=331.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhcCCCchhHH
Q 016953 18 QDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVV 97 (380)
Q Consensus 18 ~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDGttt~v 97 (380)
..+..-|+.++..+.+++++.+||.|..||++++.|++.+|.||.+++++|.++||.+-++..++.+||+..|||||++|
T Consensus 16 ~aal~iNis~AigLqsV~~snlgPkgt~KmlvsgagdIklakdgnvLl~emQiqhPTa~lIakaatAqdd~tGDGttS~V 95 (520)
T KOG0359|consen 16 QAALALNISAAIGLQSVLVLNLGPKGTEKMLVSGAGDIKLAKDGNVLLKEMQIQHPTASLIAKVATAQDDITGDGTTSVV 95 (520)
T ss_pred hcceeeccccccceeeeehhccCchhHHHhccCCccceEEEecchhhHHHHhhcCchHHHHHHHHHHhhcccCCCcceEE
Confidence 45566799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccccCHHHHHHHHHHhhccCcCCCchHHHHHHHHH
Q 016953 98 IVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFANLVVE 177 (380)
Q Consensus 98 lL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~~~~~l~~va~t~l~sK~~~~~~~~ls~lv~~ 177 (380)
+|+++|+++|...+.+|+||..|..||+.|.+.++++|+.. +.++ +++.|..+++|+|.+|....-.+.+++++++
T Consensus 96 lligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~L~k~-~~~~---~~~~L~~va~tsl~Tkv~~~la~~lt~~vv~ 171 (520)
T KOG0359|consen 96 LLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEFLEKV-SREV---DRETLKDVARTSLRTKVHAELADVLTPIVVD 171 (520)
T ss_pred EeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhhhhcc-ccch---hHHHHHHHHHHhhcCcccHHHHhHhHHHHHh
Confidence 99999999999999999999999999999999999999865 6666 5899999999999999988888999999999
Q ss_pred HHHHhhcccCCCCccccCCceeEEecCCCCcccceeEeeEEEcccccCCCCCccccCceEEEEEecccccccccceEEEE
Q 016953 178 AVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLV 257 (380)
Q Consensus 178 av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~~kIll~~~~L~~~~~~~~~~i~i 257 (380)
|+..+.. ....+|+.++.++++..++..|+.+++|++++++..|+.||+.++|+.|+++|.+|+|+|++.++.+.+
T Consensus 172 aVl~i~~----~~~~idl~mveim~mq~~s~~dT~~v~glvLdhg~rHpdmp~~~e~a~iL~~NvSLEYEK~EinsgffY 247 (520)
T KOG0359|consen 172 SVLCIRR----QEEPIDLFMVEIMEMQHKSLHDTSLVQGLVLDHGARHPDMPRRVEDAYILICNVSLEYEKPEINSGFFY 247 (520)
T ss_pred hheeecc----CCCCcchhHHHhhhhccCchhhhHHhhhhhccCCCCCcccccchhceEEEEeeccccccccccccchhc
Confidence 9988752 122578899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhCCCe----EEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHhCCeEccc
Q 016953 258 TDPRELEKIRQREADMTKERIEKLLKAGAN----VILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVST 333 (380)
Q Consensus 258 ~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~----lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa~ii~s 333 (380)
++.+|.+.+...|++++.+.+++|++.+.. +||.|++|||..++.|+++||++++|.++..|||+..+||+..+++
T Consensus 248 sta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~a~~gIlaLRRAKRRNmERL~lacGG~a~ns 327 (520)
T KOG0359|consen 248 STAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSLAKSGILALRRAKRRNMERLVLACGGEAVNS 327 (520)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhhhhcchHHHHHHhhhhHHHHHHhhccceecc
Confidence 999999999999999999999999998755 6889999999999999999999999999999999999999999999
Q ss_pred cccccCCcCCCCCCcccceeEEEEEEcCeeEEEEEcCCCCCeeEEeC
Q 016953 334 FADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAVCGLI 380 (380)
Q Consensus 334 ~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g~~~~~~~t~l~ 380 (380)
+++| +|+.+|+|+.+++.++|+++|+|+++|++|.+||+||
T Consensus 328 vddL------tp~~LG~aglVye~tlGEEkfTFIE~~~~p~S~TiLi 368 (520)
T KOG0359|consen 328 VDDL------TPDYLGYAGLVYEYTLGEEKFTFIEKCNNPSSVTILI 368 (520)
T ss_pred cccC------ChhhccccceeEEeeccceeeEeeecCCCCcceEEEE
Confidence 9875 7889999999999999999999999999999999996
No 34
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=4e-57 Score=459.90 Aligned_cols=314 Identities=22% Similarity=0.343 Sum_probs=275.3
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccChH----HHHHHHHHHHhhhh
Q 016953 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPA----AKVLVELAELQDRE 88 (380)
Q Consensus 13 ~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~----~~ll~~~~~~~~~~ 88 (380)
...+|.+++..|+.|+..+++++++||||+||+|||+++.|+++|||||+||+++|+++||+ ++|++++|++|+++
T Consensus 5 ~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~G~~~ITnDG~tIlk~i~i~hp~~~~ga~ll~~~a~~qd~e 84 (544)
T PRK12850 5 EIRFSTDARDRLLRGVNILANAVKVTLGPKGRNVVLEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVKEVASKTNDL 84 (544)
T ss_pred eecccHHHHHHHHHHHHHHHHHHhCCcCCCCCCEEEECCCCCeeEeccHHHHHHHhcCCChhhhHHHHHHHHHHhhhcch
Confidence 34568899999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccccCHHHHHHHHHHhhccCcCCCch
Q 016953 89 VGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDS 168 (380)
Q Consensus 89 ~GDGttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~~~~~l~~va~t~l~sK~~~~~~ 168 (380)
+||||||+++|+++||+++.+++++|+||+.|++||+.|++.++++|+++ +.+++ +.+.|.++++++++ .+
T Consensus 85 ~GDGTTt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~-s~~v~--~~~~l~~va~~s~~------~~ 155 (544)
T PRK12850 85 AGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKI-AKKVT--SSKEIAQVATISAN------GD 155 (544)
T ss_pred hcCCcchHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHh-ccCCC--CHHHHHHHHHHhcC------CH
Confidence 99999999999999999999999999999999999999999999999997 88886 67889999998864 37
Q ss_pred HHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeEeeEEEcccccCCCC-------CccccCceEEEEE
Q 016953 169 DFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGM-------PLRVAPAKIACLD 241 (380)
Q Consensus 169 ~~ls~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~-------~~~~~~~kIll~~ 241 (380)
+.+++++++|+..+. .+|. ++++.+ +..| .++++++|++|++++.+++| ++.++||+|+++|
T Consensus 156 ~~l~~lv~eAv~~vg---~~g~--i~v~~~---~~~g---~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d 224 (544)
T PRK12850 156 ESIGEMIAEAMDKVG---KEGV--ITVEEA---KTLG---TELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHE 224 (544)
T ss_pred HHHHHHHHHHHHHhc---ccCc--eeeEEc---cccC---cceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEe
Confidence 999999999999983 3342 332222 2233 68999999999999999875 7889999999999
Q ss_pred ecccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCc------eEEee--
Q 016953 242 FNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGA------IAVRR-- 313 (380)
Q Consensus 242 ~~L~~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I------~vv~~-- 313 (380)
+.++ +. +.+.++++++.+.|++|||++++|++.++++|.++|| +++++
T Consensus 225 ~~i~-------------~~-----------~~i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~ 280 (544)
T PRK12850 225 KKIS-------------NL-----------QDLLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPG 280 (544)
T ss_pred cccC-------------CH-----------HHHHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCC
Confidence 9653 11 2378889999999999999999999999999999999 99998
Q ss_pred ---CChhHHHHHHHHhCCeEccccccccCCcCCCCCCcccceeEEEEEEcCeeEEEEEcCCCCC
Q 016953 314 ---VRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTS 374 (380)
Q Consensus 314 ---v~~~~l~~la~~tGa~ii~s~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g~~~~~ 374 (380)
+++++|+|||++|||+++++..+++. ++++++++|+|+.|++.. ++|++|+||+.++
T Consensus 281 ~g~~~~~~le~ia~~tG~~~i~~~~~~~~-~~~~~~~LG~~~~v~~~~---~~~~~i~g~~~~~ 340 (544)
T PRK12850 281 FGDRRKAMLEDIAVLTGGQVISEDLGIKL-ENVTLDMLGRAKRVLITK---ENTTIIDGAGDKK 340 (544)
T ss_pred cCcccHHHHHHHHHHhCCEEeccccCCCc-ccCCHHHcCCCcEEEEEe---eeEEEEeCCCCHH
Confidence 99999999999999999994322221 335667899999999764 8999999998864
No 35
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=5.9e-57 Score=458.37 Aligned_cols=314 Identities=23% Similarity=0.328 Sum_probs=277.6
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccCh----HHHHHHHHHHHhhhh
Q 016953 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHP----AAKVLVELAELQDRE 88 (380)
Q Consensus 13 ~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP----~~~ll~~~~~~~~~~ 88 (380)
...+|.+++..|+.|+..+++++++||||+||+|||+++.|+++|||||+||+++|+++|| .++|++++|++|+++
T Consensus 5 ~~~~~~~a~~~~~~~~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e 84 (541)
T PRK12851 5 EVKFHVEAREKMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPTITNDGVTIAKEIELEDKFENMGAQMVREVASKTNDV 84 (541)
T ss_pred eecccHHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEECCCCCeeEecCHHHHHHHccCCCchhhHHHHHHHHHHHhhhHh
Confidence 3467789999999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccccCHHHHHHHHHHhhccCcCCCch
Q 016953 89 VGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDS 168 (380)
Q Consensus 89 ~GDGttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~~~~~l~~va~t~l~sK~~~~~~ 168 (380)
+||||||+++|+++||+++.+++++|+||+.|++||+.|++.++++|+++ +++++ +.+.+.++|++++ +++
T Consensus 85 ~GDGTTtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~-s~~~~--~~~~l~~va~~s~------~~~ 155 (541)
T PRK12851 85 AGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKAN-ARPVT--TNAEIAQVATISA------NGD 155 (541)
T ss_pred hCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHh-ccCCC--CHHHHHHHHHHhc------cCh
Confidence 99999999999999999999999999999999999999999999999997 88886 5778999998875 478
Q ss_pred HHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeEeeEEEcccccCCC-------CCccccCceEEEEE
Q 016953 169 DFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQG-------MPLRVAPAKIACLD 241 (380)
Q Consensus 169 ~~ls~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~-------~~~~~~~~kIll~~ 241 (380)
+.+++++++|+..+. .+|. +++.+.. +...++++++|++|++++.+++ |+++++||+|+++|
T Consensus 156 ~~l~~lv~~Av~~vg---~~g~-------i~i~~~~-~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d 224 (541)
T PRK12851 156 AEIGRLVAEAMEKVG---NEGV-------ITVEESK-TAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHE 224 (541)
T ss_pred HHHHHHHHHHHHHhc---ccCc-------eEEEEcc-CCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEEEc
Confidence 999999999999883 2332 2444444 4667899999999999999885 89999999999999
Q ss_pred ecccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCc------eEEee--
Q 016953 242 FNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGA------IAVRR-- 313 (380)
Q Consensus 242 ~~L~~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I------~vv~~-- 313 (380)
++++ +. +.+.++++++.+.|++|||++++|++.|+++|..+|| +++++
T Consensus 225 ~~i~-------------~~-----------~~i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~ 280 (541)
T PRK12851 225 KKIS-------------NL-----------QDLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPG 280 (541)
T ss_pred CCcC-------------cH-----------HHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCc
Confidence 9853 11 2367889999999999999999999999999999997 88886
Q ss_pred ---CChhHHHHHHHHhCCeEccccccccCCcCCCCCCcccceeEEEEEEcCeeEEEEEcCCCCC
Q 016953 314 ---VRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTS 374 (380)
Q Consensus 314 ---v~~~~l~~la~~tGa~ii~s~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g~~~~~ 374 (380)
+++++|+|||++|||+++++...++. +++++.++|+|+.|++++ ++|++|+||+.+.
T Consensus 281 ~~~~~~~~l~~ia~~tGa~~i~~~~~~~~-~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~ 340 (541)
T PRK12851 281 FGDRRKAMLEDIAILTGGTVISEDLGIKL-ENVTLEQLGRAKKVVVEK---ENTTIIDGAGSKT 340 (541)
T ss_pred cccccHhHHHHHHHHhCCEEeccCCCCCc-CcCCHHHcCCccEEEEEc---ceEEEEcCCCCHH
Confidence 99999999999999999995332222 335667899999999776 8999999998864
No 36
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=4e-57 Score=458.82 Aligned_cols=307 Identities=22% Similarity=0.345 Sum_probs=273.9
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccCh----HHHHHHHHHHHhhhhc
Q 016953 14 RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHP----AAKVLVELAELQDREV 89 (380)
Q Consensus 14 ~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP----~~~ll~~~~~~~~~~~ 89 (380)
...|.+++..|+.|+..+++++++||||+||+|||+++.|+++|||||+||+++|+++|| .++|+++++++|++++
T Consensus 4 ~~~~~~a~~~~~~~~~~la~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e~ 83 (524)
T TIGR02348 4 IKFDEEARKALLRGVDKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDKFENMGAQLVKEVASKTNDVA 83 (524)
T ss_pred ccccHHHHHHHHHHHHHHHHHhccCcCCCCCcEEEECCCCCeeEeccHHHHHHHccCCChhhHHHHHHHHHHHHccCcee
Confidence 457889999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccccCHHHHHHHHHHhhccCcCCCchH
Q 016953 90 GDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSD 169 (380)
Q Consensus 90 GDGttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~~~~~l~~va~t~l~sK~~~~~~~ 169 (380)
||||||+++|+++||+++.+++++|+||+.|++||+.|++.++++|+++ +.+++ +.+.+.++|+|+.+ +++
T Consensus 84 GDGTTtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~-s~~~~--~~~~l~~va~ts~~------~~~ 154 (524)
T TIGR02348 84 GDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEELKKL-SKPVK--GKKEIAQVATISAN------NDE 154 (524)
T ss_pred CCCcchHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHh-ccCCC--CHHHHHHHHHHhcc------ChH
Confidence 9999999999999999999999999999999999999999999999997 88886 67889999998853 589
Q ss_pred HHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCc-ccceeEeeEEEcccccCCCC-------CccccCceEEEEE
Q 016953 170 FFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSA-RDSYFLNGYALNAFRAAQGM-------PLRVAPAKIACLD 241 (380)
Q Consensus 170 ~ls~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~-~dS~li~Giv~~~~~~~~~~-------~~~~~~~kIll~~ 241 (380)
++++++++|+..+. .+|. + .+. .|+.. .+|++++|++|++++.+++| ++.++||+|++++
T Consensus 155 ~l~~lv~~A~~~v~---~~~~--i-----~v~--~g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d 222 (524)
T TIGR02348 155 EIGSLIAEAMEKVG---KDGV--I-----TVE--ESKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITD 222 (524)
T ss_pred HHHHHHHHHHHHhC---cCCc--E-----eee--cCCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeecc
Confidence 99999999999873 3332 2 232 36666 77999999999999998876 7889999999999
Q ss_pred ecccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHc------CceEEeeCC
Q 016953 242 FNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEA------GAIAVRRVR 315 (380)
Q Consensus 242 ~~L~~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~------~I~vv~~v~ 315 (380)
+.++ ++++ +.++++++.+.|++|||++++|++.|+++|..+ +|+++++++
T Consensus 223 ~~i~-------------~~~~-----------i~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~ 278 (524)
T TIGR02348 223 KKIS-------------NIKD-----------LLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPG 278 (524)
T ss_pred CCcC-------------CHHH-----------HHHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECCC
Confidence 9754 2322 577789999999999999999999999999997 899998875
Q ss_pred h-----hHHHHHHHHhCCeEcc-----ccccccCCcCCCCCCcccceeEEEEEEcCeeEEEEEcCCCCC
Q 016953 316 K-----EDMRHIAKATGATMVS-----TFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTS 374 (380)
Q Consensus 316 ~-----~~l~~la~~tGa~ii~-----s~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g~~~~~ 374 (380)
. ++|+|||.+|||++++ ++++ +++.++|+|+.|++.. +++++|+||+.++
T Consensus 279 ~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~------~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~ 338 (524)
T TIGR02348 279 FGDRRKAMLEDIAILTGGQVISEELGLKLEE------VTLDDLGKAKKVTVDK---DNTTIVEGAGDKA 338 (524)
T ss_pred ccchhhhhHHHHHHHhCCEEecccccCCcCc------CCHHHCCCceEEEEee---cEEEEEcCCCCHH
Confidence 4 8999999999999999 5554 4667899999999764 8999999998765
No 37
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=8.8e-56 Score=450.94 Aligned_cols=312 Identities=21% Similarity=0.342 Sum_probs=273.1
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccc----cChHHHHHHHHHHHhhhh
Q 016953 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEV----EHPAAKVLVELAELQDRE 88 (380)
Q Consensus 13 ~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~----~hP~~~ll~~~~~~~~~~ 88 (380)
+...|.+++..|+.|+..+++++++||||+||+|||+++.|+++|||||+||+++|++ +||.++|+++++++|+++
T Consensus 5 ~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~iTnDG~TIlk~i~~~~~~~~p~akll~e~a~~q~~e 84 (545)
T PRK12852 5 DVKFSGDARDRMLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTNDL 84 (545)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCcccChHHHHHHHHHhhcCce
Confidence 4466789999999999999999999999999999999999999999999999999999 599999999999999999
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccccCHHHHHHHHHHhhccCcCCCch
Q 016953 89 VGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDS 168 (380)
Q Consensus 89 ~GDGttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~~~~~l~~va~t~l~sK~~~~~~ 168 (380)
+||||||+++||++||+++.+++++|+||+.|++||+.|++.++++|+++ +++++ +.+.+.++++++.++ +
T Consensus 85 ~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~-s~~v~--~~~~l~~va~~s~~~------~ 155 (545)
T PRK12852 85 AGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKR-AKPVA--SSAEIAQVGTISANG------D 155 (545)
T ss_pred ecCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHh-cccCC--CHHHHHHHHhhhcCC------h
Confidence 99999999999999999999999999999999999999999999999997 88886 456699999887643 6
Q ss_pred HHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCc-ccceeEeeEEEcccccCCC-------CCccccCceEEEE
Q 016953 169 DFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSA-RDSYFLNGYALNAFRAAQG-------MPLRVAPAKIACL 240 (380)
Q Consensus 169 ~~ls~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~-~dS~li~Giv~~~~~~~~~-------~~~~~~~~kIll~ 240 (380)
+.+++++++|+.++. .+|. ++ +. .|+.. .++++++|+.|++++.+++ |+..++||+|+++
T Consensus 156 ~~l~~li~eA~~~vg---~~g~--i~-----v~--~g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~ 223 (545)
T PRK12852 156 AAIGKMIAQAMQKVG---NEGV--IT-----VE--ENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLH 223 (545)
T ss_pred HHHHHHHHHHHHHhc---cCCc--ee-----ee--cCCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEe
Confidence 899999999999983 3342 22 21 37775 7999999999999999886 7888999999999
Q ss_pred EecccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHc------CceEEeeC
Q 016953 241 DFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEA------GAIAVRRV 314 (380)
Q Consensus 241 ~~~L~~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~------~I~vv~~v 314 (380)
++.+. ++ +.+.++++.+.+.|++|||++++|++.|+++|..| +|+++++.
T Consensus 224 d~~i~-------------~~-----------~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~ 279 (545)
T PRK12852 224 EKKLS-------------GL-----------QAMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAP 279 (545)
T ss_pred cCccC-------------CH-----------HHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecC
Confidence 98653 12 25778899999999999999999999999999987 79999975
Q ss_pred C-----hhHHHHHHHHhCCeEccccccccCCcCCCCCCcccceeEEEEEEcCeeEEEEEcCCCC
Q 016953 315 R-----KEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTT 373 (380)
Q Consensus 315 ~-----~~~l~~la~~tGa~ii~s~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g~~~~ 373 (380)
+ +++|+|||.+|||+++++-..++. +++++.++|+|+.|++.+ +++++|+||..+
T Consensus 280 ~~~~~r~~~l~~ia~~tGa~~i~~~~~~~l-~~~~~~~lG~~~~v~~~~---~~~~~i~~~~~~ 339 (545)
T PRK12852 280 GFGDRRKAMLEDIAILTGGQLISEDLGIKL-ENVTLKMLGRAKKVVIDK---ENTTIVNGAGKK 339 (545)
T ss_pred CcccchHhHHHHHHHhcCCEEEecCcCCCc-CCCCHHHCCCCcEEEEEc---cEEEEEeCCCCH
Confidence 5 999999999999999994222111 235667899999999776 789999998874
No 38
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=5.7e-55 Score=443.87 Aligned_cols=312 Identities=22% Similarity=0.335 Sum_probs=271.8
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhcccc----ChHHHHHHHHHHHhhhh
Q 016953 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVE----HPAAKVLVELAELQDRE 88 (380)
Q Consensus 13 ~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~----hP~~~ll~~~~~~~~~~ 88 (380)
....|.+++..|++|+..+++++++||||+||+|||+++.|+++|||||+||+++|+++ ||.++|+++++++|+++
T Consensus 5 ~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~d~~~~pgakll~e~a~~qd~e 84 (546)
T PRK14104 5 EVKFGVDARDRMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKSADA 84 (546)
T ss_pred eecchHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEcCCCCeeEeccHHHHHHHhcCCCcccChHHHHHHHHHHhhccc
Confidence 34678899999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccccCHHHHHHHHHHhhccCcCCCch
Q 016953 89 VGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDS 168 (380)
Q Consensus 89 ~GDGttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~~~~~l~~va~t~l~sK~~~~~~ 168 (380)
+||||||+++||++||+++.+++++|+||+.|++||+.|++.++++|+++ +++++ +.+.+.++|+++.++ +
T Consensus 85 ~GDGTTTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~-a~~v~--~~~~l~~va~~s~~~------d 155 (546)
T PRK14104 85 AGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKN-SKKVT--SNDEIAQVGTISANG------D 155 (546)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHh-cccCC--CHHHHHHHHHHHhcC------c
Confidence 99999999999999999999999999999999999999999999999997 89987 356789999987653 5
Q ss_pred HHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCc-ccceeEeeEEEcccccCCCC-------CccccCceEEEE
Q 016953 169 DFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSA-RDSYFLNGYALNAFRAAQGM-------PLRVAPAKIACL 240 (380)
Q Consensus 169 ~~ls~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~-~dS~li~Giv~~~~~~~~~~-------~~~~~~~kIll~ 240 (380)
+.+++++++|+..+ +.+|. ++ +. .++.. .++++++|++|++++.+++| +.++++|+|+++
T Consensus 156 ~~i~~lv~~Av~~v---g~~g~--i~-----v~--~~~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~ 223 (546)
T PRK14104 156 AEIGKFLADAMKKV---GNEGV--IT-----VE--EAKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILIN 223 (546)
T ss_pred hHHHHHHHHHHHHh---ccCCc--ee-----eE--ecccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEe
Confidence 88999999999988 33342 22 22 23455 58999999999999998876 567889999999
Q ss_pred EecccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHH------cCceEEeeC
Q 016953 241 DFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVE------AGAIAVRRV 314 (380)
Q Consensus 241 ~~~L~~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~------~~I~vv~~v 314 (380)
+..+. +. +.+.++++++.+.|++|||++++|++.|+++|.. .+|+++++.
T Consensus 224 d~~i~-------------~~-----------~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~ 279 (546)
T PRK14104 224 EKKLS-------------SL-----------NELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAP 279 (546)
T ss_pred hhhhc-------------CH-----------HHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEecc
Confidence 85432 22 2367889999999999999999999999999995 468999887
Q ss_pred C-----hhHHHHHHHHhCCeEccccccccCCcCCCCCCcccceeEEEEEEcCeeEEEEEcCCCC
Q 016953 315 R-----KEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTT 373 (380)
Q Consensus 315 ~-----~~~l~~la~~tGa~ii~s~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g~~~~ 373 (380)
+ +++|+|||.+|||+++++...+.. +++++.++|+|+.++ ++++++++|+||+.+
T Consensus 280 ~~g~~r~~~l~~ia~~tG~~~i~~~~~~~l-~~~~~~~LG~a~~v~---~~~~~~~~i~g~~~~ 339 (546)
T PRK14104 280 GFGDRRKAMLQDIAILTGGQAISEDLGIKL-ENVTLQMLGRAKKVM---IDKENTTIVNGAGKK 339 (546)
T ss_pred CCCcchHHHHHHHHHHhCCEEEecCCCCCc-CcCCHHHCCceeEEE---EcCCEEEEEeCCCCH
Confidence 6 899999999999999998332222 335677899999998 588999999999886
No 39
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=2e-54 Score=439.51 Aligned_cols=310 Identities=21% Similarity=0.281 Sum_probs=266.1
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccChHHH----HHHHHHHHhhhh
Q 016953 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAK----VLVELAELQDRE 88 (380)
Q Consensus 13 ~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~----ll~~~~~~~~~~ 88 (380)
....|.+++...+.+|..+++++++||||+||+|||+++.|+++|||||+||+++|+++||+++ |+++++.+|+++
T Consensus 4 ~~~~~~~~~~~~~~g~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~a~~g~~li~~~a~~~~~e 83 (529)
T CHL00093 4 KILYQDNARRALERGMDILAEAVSVTLGPKGRNVVLEKKYGSPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTNDV 83 (529)
T ss_pred eeecCHHHHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCCeeEeccHHHHHHHccCcCHHHHHHHHHHHHHHHhcCce
Confidence 3467889999999999999999999999999999999999999999999999999999999995 788899999999
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccccCHHHHHHHHHHhhccCcCCCch
Q 016953 89 VGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDS 168 (380)
Q Consensus 89 ~GDGttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~~~~~l~~va~t~l~sK~~~~~~ 168 (380)
+||||||++||+++||+++.+++++|+||..|++||+.|.+.+++.|+++ +.+++ +.+.|.++|+++++ ++
T Consensus 84 ~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~-s~~v~--d~~~L~~VA~ts~~------~~ 154 (529)
T CHL00093 84 AGDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAEY-ARPVE--DIQAITQVASISAG------ND 154 (529)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCCC--CHHHHHHHHHHhcc------Ch
Confidence 99999999999999999999999999999999999999999999999997 88986 68889999998864 68
Q ss_pred HHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeEeeEEEcccccCCCC---Cc----cccCceEEEEE
Q 016953 169 DFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGM---PL----RVAPAKIACLD 241 (380)
Q Consensus 169 ~~ls~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~---~~----~~~~~kIll~~ 241 (380)
+.+++|+++|+..+. .+|. ++++ ..++...++++++|++|++++.+++| ++ .++||+|++++
T Consensus 155 ~~l~~lv~eAv~~vg---~~g~--i~~~------~g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d 223 (529)
T CHL00093 155 EEVGSMIADAIEKVG---REGV--ISLE------EGKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTD 223 (529)
T ss_pred HHHHHHHHHHHHHhc---cCCc--eeec------CCCccceeeEEEeeEEecCccCcCccccCCccceEEecCceehhhc
Confidence 999999999999983 3342 2211 12234578899999999999998876 44 48999999999
Q ss_pred ecccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHH--HH----cCceEEeeC-
Q 016953 242 FNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYF--VE----AGAIAVRRV- 314 (380)
Q Consensus 242 ~~L~~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l--~~----~~I~vv~~v- 314 (380)
++|++.+ ..+.++++++.+.|++++|++++|++.++++| .+ .+|++++++
T Consensus 224 ~~le~~~-----------------------~~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~ 280 (529)
T CHL00093 224 KKITLVQ-----------------------QDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPG 280 (529)
T ss_pred CCCCchH-----------------------HHHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCC
Confidence 9998531 23788899999999999999999999777666 66 489999998
Q ss_pred ----ChhHHHHHHHHhCCeEccccccccCCcCCCCCCcccceeEEEEEEcCeeEEEEEc
Q 016953 315 ----RKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKG 369 (380)
Q Consensus 315 ----~~~~l~~la~~tGa~ii~s~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g 369 (380)
++++|+|||.+|||+++++-.+++. +++++..+|+|+.++++. +++++|++
T Consensus 281 ~~~~~k~~l~~ia~~tGa~~i~~~~~~~~-~~~~~~~LG~~~~v~~~~---~~~~~~~~ 335 (529)
T CHL00093 281 FGDRRKAMLEDIAILTGGQVITEDAGLSL-ETIQLDLLGQARRIIVTK---DSTTIIAD 335 (529)
T ss_pred CCcchHHHHHHHHHhhCCEEecccccCCc-CCCCHHHCCcceEEEEec---CEEEEEec
Confidence 4588999999999999994111111 235677899999999764 78888884
No 40
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=3.6e-54 Score=440.57 Aligned_cols=311 Identities=25% Similarity=0.377 Sum_probs=271.5
Q ss_pred ccccH--HHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccChH----HHHHHHHHHHhhh
Q 016953 14 RQAGQ--DVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPA----AKVLVELAELQDR 87 (380)
Q Consensus 14 ~~~~~--~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~----~~ll~~~~~~~~~ 87 (380)
..+|. ++|...+.++..+++++++||||+||+|||+++.|+++|||||+||+++|+++||+ ++|+++++++|++
T Consensus 59 ~~~~~~~~ar~~l~~g~~~la~~vktTLGP~G~~kmi~~~~G~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~ 138 (600)
T PLN03167 59 LHFNKDGSAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTND 138 (600)
T ss_pred eecCCcHHHHHHHHHHHHHHHHHHhccCCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCchhhHHHHHHHHHHHhhhh
Confidence 35667 79999999999999999999999999999999999999999999999999999995 9999999999999
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccccCHHHHHHHHHHhhccCcCCCc
Q 016953 88 EVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGD 167 (380)
Q Consensus 88 ~~GDGttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~~~~~l~~va~t~l~sK~~~~~ 167 (380)
++||||||++||+++|++++.+++..|+||..|++||+.|.+.++++|+++ +.+++ + +.|.++|+++++ +
T Consensus 139 evGDGTTTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~-s~~v~--d-~~L~~vA~tS~~------~ 208 (600)
T PLN03167 139 LAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKM-SKEVE--D-SELADVAAVSAG------N 208 (600)
T ss_pred hhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHh-cccCC--H-HHHHHHHHHhcc------C
Confidence 999999999999999999999999999999999999999999999999997 88885 3 569999999874 5
Q ss_pred hHHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccc-eeEeeEEEcccccCC-------CCCccccCceEEE
Q 016953 168 SDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDS-YFLNGYALNAFRAAQ-------GMPLRVAPAKIAC 239 (380)
Q Consensus 168 ~~~ls~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS-~li~Giv~~~~~~~~-------~~~~~~~~~kIll 239 (380)
++.|++|+++|+.++ +++|.+ + ...|++..|+ ++++|++|++++.++ +|+++++||+|++
T Consensus 209 ~~~i~~liaeAv~~V---g~~g~i--~-------v~~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill 276 (600)
T PLN03167 209 NYEVGNMIAEAMSKV---GRKGVV--T-------LEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLL 276 (600)
T ss_pred cHHHHHHHHHHHHHh---ccCCcE--E-------eccCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEE
Confidence 679999999999998 333422 2 1378899887 999999999999988 6788999999999
Q ss_pred EEecccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHH------HcCceEEee
Q 016953 240 LDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFV------EAGAIAVRR 313 (380)
Q Consensus 240 ~~~~L~~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~------~~~I~vv~~ 313 (380)
+++.+ ++.+++ .++++++.+.|+++|+++++|++.++++|. ..+|+++++
T Consensus 277 ~d~~i-------------~~~~~l-----------~~~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~ 332 (600)
T PLN03167 277 VDKKI-------------TNARDL-----------IGILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKA 332 (600)
T ss_pred Ecccc-------------CCHHHH-----------HHHHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEc
Confidence 99864 344444 344567788999999999999999999999 667999999
Q ss_pred CC-----hhHHHHHHHHhCCeEccccccccCCcCCCCCCcccceeEEEEE-----EcC--------eeEEEEEcCC
Q 016953 314 VR-----KEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSADEVVEER-----VAD--------DDVIMIKGTK 371 (380)
Q Consensus 314 v~-----~~~l~~la~~tGa~ii~s~~~l~~~~~~~~~~lG~~~~v~~~~-----ig~--------~~~~~f~g~~ 371 (380)
.+ +++|+|||.+|||+++++..+++. +++++.++|+|+.|++++ +|+ +++.+|++|.
T Consensus 333 p~~g~~~~~~L~dia~~tGa~~i~~~~~~~l-~~~~~~~LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~~~~ 407 (600)
T PLN03167 333 PGFGERKSQYLDDIAILTGGTVIREEVGLSL-DKVGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLI 407 (600)
T ss_pred ccCCcchHHHHHHHHHhhCCEEecccccCCc-ccCCHHHCceeeEEEEecccceeeCCCccHHHHHHHHHHHHhhh
Confidence 85 889999999999999994322221 335667899999999987 876 4889998875
No 41
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=100.00 E-value=3.1e-38 Score=293.68 Aligned_cols=203 Identities=22% Similarity=0.321 Sum_probs=184.4
Q ss_pred CCchHHHHHHHHHHHHHhhcccCCCCccccCC-ceeEEecCCCCcccceeEeeEEEcccccCCCCCccccCceEEEEEec
Q 016953 165 GGDSDFFANLVVEAVQAVKMTNQRGEVKYPIK-GINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFN 243 (380)
Q Consensus 165 ~~~~~~ls~lv~~av~~~~~~~~~g~~~~~~~-~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~~kIll~~~~ 243 (380)
+.|.++|++++++|+..+.+...++ ..+|++ +|+|++++||++.||++++|++|++.+.+++||++++||||++++|+
T Consensus 17 ~~~~~~ls~l~v~Av~~v~~~~~~~-~~~di~~~I~I~ki~Ggs~~dS~li~Gvvi~k~~~~~~m~~~i~n~kIlll~~~ 95 (261)
T cd03334 17 ESWLDILLPLVWKAASNVKPDVRAG-DDMDIRQYVKIKKIPGGSPSDSEVVDGVVFTKNVAHKRMPSKIKNPRILLLQGP 95 (261)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccC-CccChhHceEEEEecCCCHHHcEEEeeEEEeCCCCCccCCcccCCCcEEEEeee
Confidence 3589999999999999986422222 247765 59999999999999999999999999999999999999999999999
Q ss_pred ccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHH
Q 016953 244 LQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIA 323 (380)
Q Consensus 244 L~~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la 323 (380)
|++++++. ++++++.+.++|++++++++++|.+.|++||+|+++|++.|++||.++||++++++++.+|+|||
T Consensus 96 Le~~~~~~-------~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~gI~~v~~v~~~dl~rIa 168 (261)
T cd03334 96 LEYQRVEN-------KLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGITLVLNVKPSVLERIS 168 (261)
T ss_pred eccccccC-------CHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHCCCEEEEecCHHHHHHHH
Confidence 99998863 47899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeEccccccccCCcCCCCCCcccceeEEEEEEcC-----eeEEEEEcCCCCCeeEEeC
Q 016953 324 KATGATMVSTFADMEGEETFDSSLLGSADEVVEERVAD-----DDVIMIKGTKTTSAVCGLI 380 (380)
Q Consensus 324 ~~tGa~ii~s~~~l~~~~~~~~~~lG~~~~v~~~~ig~-----~~~~~f~g~~~~~~~t~l~ 380 (380)
++|||++++++.+ +++++.+|+|+.|+++++|+ ++|++|+||+.+++|||||
T Consensus 169 ~~tGa~ii~~i~~-----~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~~~~~TIlL 225 (261)
T cd03334 169 RCTGADIISSMDD-----LLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPKELGCTILL 225 (261)
T ss_pred HHhCCEEecChhh-----hcCcccCcCcceEEEEEecCcCCCceeEEEEecCCCCceeEEEE
Confidence 9999999999542 24677899999999999996 6999999999999999986
No 42
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.8e-37 Score=279.18 Aligned_cols=223 Identities=39% Similarity=0.560 Sum_probs=210.1
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhcCCC
Q 016953 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDG 92 (380)
Q Consensus 13 ~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDG 92 (380)
++..|.|+.++|+.|..++++++++|+||+|++|+++.+.|++++|||| .|++++++...+..|+.++|||
T Consensus 22 ~Ri~G~ea~Ks~I~agkaVA~~lrtSLGPkGlDK~l~~pdgditvtndg---------d~~IakLmv~LS~sqd~eIgdG 92 (400)
T KOG0357|consen 22 DRLFGLDAVKSHIGAAKAVARILRTSLGPKGLDKMLVSPDGDITVTNDG---------VHQIAKLIVILSKSQDDEIGDG 92 (400)
T ss_pred chhhHHHHhhhhhHHHHHHHHHHHhhcCccccccccccCCCCceeeecc---------chHHHHHHHHhcccchhhhccC
Confidence 4678999999999999999999999999999999999999999999999 7899999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccccCHHHHHHHHHHhhccCcCCCchHHHH
Q 016953 93 TTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFA 172 (380)
Q Consensus 93 ttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~~~~~l~~va~t~l~sK~~~~~~~~ls 172 (380)
||.+++|++.+++++..++.+|+||..|.+||..|.+.+++.|.+. +.+++
T Consensus 93 tTgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i-~~~~e---------------------------- 143 (400)
T KOG0357|consen 93 TTGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEI-SDPFE---------------------------- 143 (400)
T ss_pred CcccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhh-ccccc----------------------------
Confidence 9999999999999999999999999999999999999999988776 54432
Q ss_pred HHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeEeeEEEcccccCCCCCccccCceEEEEEecccccccccc
Q 016953 173 NLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLG 252 (380)
Q Consensus 173 ~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~~kIll~~~~L~~~~~~~~ 252 (380)
T Consensus 144 -------------------------------------------------------------------------------- 143 (400)
T KOG0357|consen 144 -------------------------------------------------------------------------------- 143 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHhCCeEcc
Q 016953 253 VQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVS 332 (380)
Q Consensus 253 ~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa~ii~ 332 (380)
+..+++++++.|+++++|||++||+|.++|.+|+..+++||...++|.||.+|||+|++
T Consensus 144 ---------------------f~emi~~vK~~ga~l~icqwgfddeanhll~~n~lpavrwVGGpEiEliAiaT~grIVp 202 (400)
T KOG0357|consen 144 ---------------------FEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVP 202 (400)
T ss_pred ---------------------HHHHHHHHHhhCCcEEEEecccCchhhhHHhhcCCCceeecCCcceEEEEeecCCeeec
Confidence 35568899999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCcCCCCCCcccceeEEEEEEc--CeeEEEEEcCCCCCeeEEeC
Q 016953 333 TFADMEGEETFDSSLLGSADEVVEERVA--DDDVIMIKGTKTTSAVCGLI 380 (380)
Q Consensus 333 s~~~l~~~~~~~~~~lG~~~~v~~~~ig--~~~~~~f~g~~~~~~~t~l~ 380 (380)
++++| +++.+|+|+.|++..|| .++++.++.|++.+++||.+
T Consensus 203 rF~eL------~~~kLG~aglVrE~sfgttkdkmlviEqc~nskaVTifv 246 (400)
T KOG0357|consen 203 RFSEL------TAEKLGFAGLVREISFGTTKDKMLVIEQCKNSKAVTIFV 246 (400)
T ss_pred cHhhh------CHhhccccceEEEEecccccceEEEEEecCCCceEEEEE
Confidence 99886 66789999999999998 68999999999999999974
No 43
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=100.00 E-value=3.1e-33 Score=252.93 Aligned_cols=180 Identities=40% Similarity=0.555 Sum_probs=167.9
Q ss_pred HHHHHHHHHhhccCcCCCchHHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeEeeEEEcccccCCCC
Q 016953 149 DSLVNCAKTSMSSKLIGGDSDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGM 228 (380)
Q Consensus 149 ~~l~~va~t~l~sK~~~~~~~~ls~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~ 228 (380)
+.|.++|+|+++||+ +.|.+.+++++++|++.+.+.. + .++.++|+|++++||++.||++++|++|++++.+++|
T Consensus 2 ~~l~~ia~ts~~sk~-~~~~~~l~~l~~~Av~~v~~~~--~--~~~~~~I~i~~~~gg~~~ds~li~Gv~~~~~~~~~~m 76 (209)
T cd03333 2 ELLLQVATTSLNSKL-SSWDDFLGKLVVDAVLKVGPDN--R--MDDLGVIKVEKIPGGSLEDSELVVGVVFDKGYASPYM 76 (209)
T ss_pred hHHHHHHHHHhccch-hhHHHHHHHHHHHHHHHhhccC--C--CCchHHEEEEEecCcChhhceeEeeEEEeccccCCCC
Confidence 468899999999999 9999999999999999996421 2 4667899999999999999999999999999999999
Q ss_pred CccccCceEEEEEecccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCc
Q 016953 229 PLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGA 308 (380)
Q Consensus 229 ~~~~~~~kIll~~~~L~~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I 308 (380)
|+.++||||++++++|++ ||+++++|++.|++||.++||
T Consensus 77 ~~~~~n~~Ill~~~~le~-----------------------------------------vii~~~~I~~~al~~l~~~~I 115 (209)
T cd03333 77 PKRLENAKILLLDCPLEY-----------------------------------------VVIAEKGIDDLALHYLAKAGI 115 (209)
T ss_pred CeEcCCCcEEEEeCCeeE-----------------------------------------EEEecCcccHHHHHHHHHCCC
Confidence 999999999999999975 999999999999999999999
Q ss_pred eEEeeCChhHHHHHHHHhCCeEccccccccCCcCCCCCCcccceeEEEEEEcCeeEEEEEcCCCCCeeEEeC
Q 016953 309 IAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAVCGLI 380 (380)
Q Consensus 309 ~vv~~v~~~~l~~la~~tGa~ii~s~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g~~~~~~~t~l~ 380 (380)
++++++++++|+|||++|||+++++++++ +++.+|+|++|+++++|+++|++|++|+.+.+|||||
T Consensus 116 ~~v~~~~~~~l~~ia~~tga~ii~~~~~~------~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~tIll 181 (209)
T cd03333 116 MAVRRVKKEDLERIARATGATIVSSLEDL------TPEDLGTAELVEETKIGEEKLTFIEGCKGGKAATILL 181 (209)
T ss_pred EEEEeCCHHHHHHHHHHHCCEEecccccC------ChhhceeeeEEEEEEECCeEEEEEEcCCCCCEEEEEE
Confidence 99999999999999999999999997654 5678999999999999999999999999999999986
No 44
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=9.8e-30 Score=246.30 Aligned_cols=310 Identities=24% Similarity=0.350 Sum_probs=260.5
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccChH----HHHHHHHHHHhhh
Q 016953 12 GERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPA----AKVLVELAELQDR 87 (380)
Q Consensus 12 ~~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~----~~ll~~~~~~~~~ 87 (380)
.+..+|.+++..-++++..||+.+..|+||+||+++|-...|.|.||+||.|+.+++.+.+++ ++++++.+.+..+
T Consensus 17 k~i~fg~~~r~~ll~Gv~~Ladav~~TlgpKgrnViieq~~gsPkvtkdgvTva~si~l~d~~~n~gaklvq~va~~tN~ 96 (550)
T KOG0356|consen 17 KDIKFGKDVRAKLLQGVDLLADAVAVTLGPKGRNVIIEQSWGSPKVTKDGVTVAKSIELKDKYENIGAKLVQDVANNTNE 96 (550)
T ss_pred cccccCHHHHHHHHhhHHHHHHHhhhhccCCcceEEcccccCCCceecCCceeeccccccchhhhhccHHHHHHHhhccC
Confidence 356899999999999999999999999999999999999999999999999999999999998 6889999999999
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccccCHHHHHHHHHHhhccCcCCCc
Q 016953 88 EVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGD 167 (380)
Q Consensus 88 ~~GDGttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~~~~~l~~va~t~l~sK~~~~~ 167 (380)
..|||||++.+|+.++..++..-+.+|.+|..+.+|...|.+...+.|.++ ++++. ..+.+.++|.++. +.
T Consensus 97 ~agdGtttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~-sk~Vt--t~eeIaqVAtiSA------ng 167 (550)
T KOG0356|consen 97 EAGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKM-SKPVT--TPEEIAQVATISA------NG 167 (550)
T ss_pred ccccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHh-CCCCC--CHHHHHHHHhhhc------CC
Confidence 999999999999999999999999999999999999999999999999998 99997 6889999999765 45
Q ss_pred hHHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCc-ccceeEeeEEEcccccCCCCCc-------cccCceEEE
Q 016953 168 SDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSA-RDSYFLNGYALNAFRAAQGMPL-------RVAPAKIAC 239 (380)
Q Consensus 168 ~~~ls~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~-~dS~li~Giv~~~~~~~~~~~~-------~~~~~kIll 239 (380)
+....+++.+|++++ +++|.+++ ..|... .+-++++|+-|++++.+|++.+ ++++|++++
T Consensus 168 D~~ig~li~~a~~kv---G~~GVItv---------~~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll 235 (550)
T KOG0356|consen 168 DKEIGNLISDAMKKV---GRKGVITV---------KDGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLL 235 (550)
T ss_pred cHHHHHHHHHHHHHh---CcCCeEEe---------ecCCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhh
Confidence 788899999999999 55554332 366665 6778999999999999988754 355666666
Q ss_pred EEecccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcC------ceEEee
Q 016953 240 LDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAG------AIAVRR 313 (380)
Q Consensus 240 ~~~~L~~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~------I~vv~~ 313 (380)
.+..+ +.+ +.+.+.++.-.+...++++.+.+++.+++..|.-|+ +.+++.
T Consensus 236 ~~kki-------------------~~v-----~~ivp~LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKa 291 (550)
T KOG0356|consen 236 SEKKI-------------------SSV-----QSIVPALELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKA 291 (550)
T ss_pred hhhhh-------------------hHH-----HHHhHHHHHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEec
Confidence 55433 122 235666777777788999999999999999999985 455554
Q ss_pred -----CChhHHHHHHHHhCCeEcccccc-ccCCcCCCCCCcccceeEEEEEEcCeeEEEEEcC
Q 016953 314 -----VRKEDMRHIAKATGATMVSTFAD-MEGEETFDSSLLGSADEVVEERVADDDVIMIKGT 370 (380)
Q Consensus 314 -----v~~~~l~~la~~tGa~ii~s~~~-l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g~ 370 (380)
-++..+.+++.+|||..+..--. ++. +..+..++|+|..+. +..+..+.+.|-
T Consensus 292 pgfGdnrk~~l~Diai~Tg~~v~~~e~~~l~l-e~~~~~dLG~~~evv---vtkd~t~ll~g~ 350 (550)
T KOG0356|consen 292 PGFGDNRKNLLKDIAILTGATVFGEELSTLNL-EDAKLEDLGEVGEVV---VTKDDTMLLKGK 350 (550)
T ss_pred CCCcchHHHhhhHHHHHhhhhhhccchhhccc-ccCchhhcCcceeEE---EecCcceeeCCC
Confidence 56777999999999999986544 333 456778999999887 556666666653
No 45
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=99.92 E-value=8.5e-25 Score=231.09 Aligned_cols=202 Identities=19% Similarity=0.264 Sum_probs=181.0
Q ss_pred CchHHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeEeeEEEcccccCCCCCccccCceEEEEEeccc
Q 016953 166 GDSDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQ 245 (380)
Q Consensus 166 ~~~~~ls~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~~kIll~~~~L~ 245 (380)
.|.+.+..++++|...+++.-..|...+..++|++++++||...||+++.|+++.+..+++.|.++.++|||+++.++|+
T Consensus 332 ~W~~ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~~dS~vi~Gvv~sKn~~~k~M~~~~e~prilll~g~le 411 (1598)
T KOG0230|consen 332 EWLDIITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSRVDSEVIKGVVCSKNVAHKRMATKYENPRILLLGGPLE 411 (1598)
T ss_pred hHHHHHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCcccceeeeEEEeecchhhhhhhhhccCCceEEEecchh
Confidence 58888999999999999875443444455689999999999999999999999999999999999999999999999999
Q ss_pred ccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHH
Q 016953 246 KTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKA 325 (380)
Q Consensus 246 ~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~ 325 (380)
|++-..+ ...++.+.++|.++++.+|++|...+++++++.++|+..|+++|...+|.++-++++.-|+||+++
T Consensus 412 yqrisn~-------lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k~I~lvlnvK~s~leRIsR~ 484 (1598)
T KOG0230|consen 412 YQRISNQ-------LSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDKGISLVLNVKRSLLERISRC 484 (1598)
T ss_pred hhhhhcc-------ccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhccCeEEEEeccHHHHHHHHHH
Confidence 9875543 134456666799999999999999999999999999999999999999999999999999999999
Q ss_pred hCCeEccccccccCCcCCCCCCcccceeEEEEEEc-----CeeEEEEEcCCCCCeeEEeC
Q 016953 326 TGATMVSTFADMEGEETFDSSLLGSADEVVEERVA-----DDDVIMIKGTKTTSAVCGLI 380 (380)
Q Consensus 326 tGa~ii~s~~~l~~~~~~~~~~lG~~~~v~~~~ig-----~~~~~~f~g~~~~~~~t~l~ 380 (380)
|||.|+++++.+ ....+|+|+.|++.++- .+.++||+||++++|||+||
T Consensus 485 tga~I~~siDsl------t~~klg~C~~F~v~~~~e~hk~sKTlmffegc~~~lG~TiLL 538 (1598)
T KOG0230|consen 485 TGADIVPSVDSL------TSQKLGYCELFRVENYVEEHKPSKTLMFFEGCPKPLGCTILL 538 (1598)
T ss_pred hcCceecchhhh------hccccCCCccHhhhhhhhcccchhhhHHhhcCCCCCCceEEe
Confidence 999999999764 56789999999997776 57999999999999999996
No 46
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=80.97 E-value=7.4 Score=31.80 Aligned_cols=54 Identities=17% Similarity=0.147 Sum_probs=43.8
Q ss_pred HHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHhCCeE
Q 016953 276 ERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATM 330 (380)
Q Consensus 276 ~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa~i 330 (380)
...+.|++.|+++|+|. .+.+-+.++|..+||-+..-.+.+.=+.|-....+..
T Consensus 56 ~~a~~l~~~gvdvvi~~-~iG~~a~~~l~~~GIkv~~~~~~~V~e~i~~~~~g~l 109 (121)
T COG1433 56 RIAELLVDEGVDVVIAS-NIGPNAYNALKAAGIKVYVAPGGTVEEAIKAFLEGEL 109 (121)
T ss_pred HHHHHHHHcCCCEEEEC-ccCHHHHHHHHHcCcEEEecCCCCHHHHHHHHhcCCc
Confidence 35788999999999998 8999999999999999999888555555555555544
No 47
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=77.58 E-value=7.7 Score=29.46 Aligned_cols=38 Identities=24% Similarity=0.350 Sum_probs=32.0
Q ss_pred HHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCCh
Q 016953 278 IEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRK 316 (380)
Q Consensus 278 v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~ 316 (380)
.+.+.+.++++|+|. .|.+.+...|.++||-++.....
T Consensus 46 ~~~l~~~~v~~li~~-~iG~~~~~~L~~~gI~v~~~~~~ 83 (94)
T PF02579_consen 46 AKFLAEEGVDVLICG-GIGEGAFRALKEAGIKVYQGAGG 83 (94)
T ss_dssp HHHHHHTTESEEEES-CSCHHHHHHHHHTTSEEEESTSS
T ss_pred HHHHHHcCCCEEEEe-CCCHHHHHHHHHCCCEEEEcCCC
Confidence 455666899999998 68999999999999999998433
No 48
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=74.04 E-value=9.9 Score=29.42 Aligned_cols=44 Identities=23% Similarity=0.333 Sum_probs=35.4
Q ss_pred HHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHH
Q 016953 276 ERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRH 321 (380)
Q Consensus 276 ~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~ 321 (380)
...+.|...++++|+|. ++.+.+.+.|..+||.++.... ..++.
T Consensus 54 ~~~~~l~~~~v~~vi~~-~iG~~~~~~l~~~gI~v~~~~~-~~i~~ 97 (103)
T cd00851 54 KAAEFLADEGVDVVIVG-GIGPRALNKLRNAGIKVYKGAE-GTVEE 97 (103)
T ss_pred HHHHHHHHcCCCEEEeC-CCCcCHHHHHHHCCCEEEEcCC-CCHHH
Confidence 34566666899999996 6999999999999999998776 34443
No 49
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=68.78 E-value=16 Score=28.14 Aligned_cols=43 Identities=19% Similarity=0.260 Sum_probs=34.5
Q ss_pred HHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHH
Q 016953 277 RIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMR 320 (380)
Q Consensus 277 ~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~ 320 (380)
..+.+...++++|+|. ++.+.+...|.++||.++.......++
T Consensus 53 ~~~~l~~~~v~~vi~~-~iG~~a~~~l~~~gI~v~~~~~~~~v~ 95 (102)
T cd00562 53 AARLLALEGCDAVLVG-GIGGPAAAKLEAAGIKPIKAAEGGTIE 95 (102)
T ss_pred HHHHHHHCCCcEEEEc-ccCccHHHHHHHcCCEEEEcCCCCcHH
Confidence 3455667899999998 599999999999999999877633333
No 50
>PRK07283 hypothetical protein; Provisional
Probab=58.60 E-value=48 Score=25.82 Aligned_cols=50 Identities=6% Similarity=-0.027 Sum_probs=38.3
Q ss_pred HHHHHHHhCCCeEEEeCCCCCHHHH----HHHHHcCceEEeeCChhHHHHHHHHhCC
Q 016953 276 ERIEKLLKAGANVILTTKGIDDMAL----KYFVEAGAIAVRRVRKEDMRHIAKATGA 328 (380)
Q Consensus 276 ~~v~~i~~~gv~lVi~~~~I~~~al----~~l~~~~I~vv~~v~~~~l~~la~~tGa 328 (380)
...+.|.+-.+.+|+.+.+.++... +.+..++|.++...+++ .|..++|=
T Consensus 25 ~v~~aik~gk~~lVi~A~Das~~~~kk~~~~~~~~~Vp~~~~~t~~---eLG~a~Gk 78 (98)
T PRK07283 25 LVVKAIQSGQAKLVFLANDAGPNLTKKVTDKSNYYQVEVSTVFSTL---ELSAAVGK 78 (98)
T ss_pred HHHHHHHcCCccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCHH---HHHHHhCC
Confidence 3356677778999999999998887 66667799998877664 56677774
No 51
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=56.07 E-value=41 Score=29.01 Aligned_cols=52 Identities=21% Similarity=0.307 Sum_probs=37.7
Q ss_pred HHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEe-eC-C-----hhHHHHHHHHhCCe
Q 016953 278 IEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVR-RV-R-----KEDMRHIAKATGAT 329 (380)
Q Consensus 278 v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~-~v-~-----~~~l~~la~~tGa~ 329 (380)
++.|.+.+|+||+......+...+.|.+.||.++- .. . .+.++.+++++|-.
T Consensus 53 ~E~l~~l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~lg~~~g~~ 111 (195)
T cd01143 53 VEKIVALKPDLVIVSSSSLAELLEKLKDAGIPVVVLPAASSLDEIYDQIELIGKITGAE 111 (195)
T ss_pred HHHHhccCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHHHHHhCCh
Confidence 57788889999998766666677889999985432 22 1 24577888888863
No 52
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=50.84 E-value=64 Score=31.10 Aligned_cols=57 Identities=12% Similarity=0.081 Sum_probs=46.8
Q ss_pred HHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHhCCeEcc
Q 016953 275 KERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVS 332 (380)
Q Consensus 275 ~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa~ii~ 332 (380)
.++++.+.+.+|++|++..+.+.. .+.|.+.||.++-.+..-..-+-+.-.|+..+-
T Consensus 72 ~~~l~vi~e~~v~~V~~~~G~P~~-~~~lk~~Gi~v~~~v~s~~~A~~a~~~GaD~vV 128 (320)
T cd04743 72 AAQLAVVRAIKPTFALIAGGRPDQ-ARALEAIGISTYLHVPSPGLLKQFLENGARKFI 128 (320)
T ss_pred HHHHHHHHhcCCcEEEEcCCChHH-HHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEE
Confidence 456788888999999999887776 588999999999888776666778888998773
No 53
>cd01144 BtuF Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=50.64 E-value=52 Score=29.67 Aligned_cols=52 Identities=13% Similarity=0.262 Sum_probs=38.9
Q ss_pred HHHHHhCCCeEEEeCCCCCHH-HHHHHHHcCceEEeeC--C----hhHHHHHHHHhCCe
Q 016953 278 IEKLLKAGANVILTTKGIDDM-ALKYFVEAGAIAVRRV--R----KEDMRHIAKATGAT 329 (380)
Q Consensus 278 v~~i~~~gv~lVi~~~~I~~~-al~~l~~~~I~vv~~v--~----~~~l~~la~~tGa~ 329 (380)
+|+|.+.+|+|||....-++. ..+.|.+.||.++-.- . .+.++.+++++|-.
T Consensus 50 ~E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~lg~~~g~~ 108 (245)
T cd01144 50 LERVLALKPDLVIAWDDCNVCAVVDQLRAAGIPVLVSEPQTLDDILADIRRLGTLAGRP 108 (245)
T ss_pred HHHHHhCCCCEEEEecCCCHHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhCCh
Confidence 678889999999997655454 4888999998765431 1 44588899999986
No 54
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=49.85 E-value=50 Score=32.23 Aligned_cols=53 Identities=17% Similarity=0.286 Sum_probs=40.2
Q ss_pred HHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeC---C----hhHHHHHHHHhCCe
Q 016953 277 RIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRV---R----KEDMRHIAKATGAT 329 (380)
Q Consensus 277 ~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v---~----~~~l~~la~~tGa~ 329 (380)
-+|+|...+|+|||....-.+...+.|.+.||.++..- + .+.++.+++++|-.
T Consensus 111 n~E~Il~l~PDLVi~~~~~~~~~~~~L~~~gi~V~~~~~~~~l~~i~~~i~~lG~i~G~e 170 (359)
T PRK09534 111 NVEAVVGLDPDLVLAPNAVAGDTVTRLREAGITVFHFPAATSIEDVAEKTATIGRLTGNC 170 (359)
T ss_pred CHHHHhcCCCCEEEEcCCCchHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHHHHHhCCH
Confidence 36889999999999876556667888999999886542 1 24567888888874
No 55
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=49.56 E-value=77 Score=30.26 Aligned_cols=58 Identities=17% Similarity=0.208 Sum_probs=47.1
Q ss_pred HHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHhCCeEcc
Q 016953 275 KERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVS 332 (380)
Q Consensus 275 ~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa~ii~ 332 (380)
.++++.+.+.++++|.+..+.+....+.+++.|+.++-.+...+.-+-+.-.|+..+.
T Consensus 77 ~~~~~~~~~~~v~~v~~~~g~p~~~i~~lk~~g~~v~~~v~s~~~a~~a~~~GaD~Iv 134 (307)
T TIGR03151 77 DELVDLVIEEKVPVVTTGAGNPGKYIPRLKENGVKVIPVVASVALAKRMEKAGADAVI 134 (307)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcHHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEE
Confidence 3456777889999999988888888899999999998887766666677777988874
No 56
>cd00852 NifB NifB belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme as part of nitrogen fixation in bacteria. This domain is sometimes found fused to a N-terminal domain (the Radical SAM domain) in nifB-like proteins.
Probab=48.75 E-value=66 Score=25.13 Aligned_cols=39 Identities=21% Similarity=0.246 Sum_probs=30.8
Q ss_pred HHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCC
Q 016953 274 TKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVR 315 (380)
Q Consensus 274 l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~ 315 (380)
+...++.+ .++++|+|. ++.+.+...|.++||.+++.-.
T Consensus 56 ~~~~l~~l--~~~~vvi~~-~iG~~a~~~L~~~GI~v~~~~~ 94 (106)
T cd00852 56 LDAIIKLL--SDCDAVLCA-KIGDEPKEKLEEAGIEVIEAYA 94 (106)
T ss_pred HHHHHHHH--cCCcEEeeh-hhCccHHHHHHHCCCEEEEecC
Confidence 33344444 599999987 8999999999999999996654
No 57
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=46.90 E-value=86 Score=25.55 Aligned_cols=51 Identities=20% Similarity=0.180 Sum_probs=36.0
Q ss_pred HHHHHHHhCCCeEEEeCCCCCHH-----HHHHHHHcCceEEeeCChhHHHHHHHHhCCe
Q 016953 276 ERIEKLLKAGANVILTTKGIDDM-----ALKYFVEAGAIAVRRVRKEDMRHIAKATGAT 329 (380)
Q Consensus 276 ~~v~~i~~~gv~lVi~~~~I~~~-----al~~l~~~~I~vv~~v~~~~l~~la~~tGa~ 329 (380)
+.++.|.+..+.+||.+.++++. ..+++.++||.++..-++++ |..++|-.
T Consensus 37 ~v~kaikkgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~~tk~e---LG~a~Gk~ 92 (122)
T PRK04175 37 ETTKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYVPSKKD---LGKAAGLE 92 (122)
T ss_pred HHHHHHHcCCccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEECCHHH---HHHHhCCC
Confidence 44566777779999999999763 34446788999877776655 55555543
No 58
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=45.42 E-value=1.2e+02 Score=22.97 Aligned_cols=52 Identities=10% Similarity=0.076 Sum_probs=41.0
Q ss_pred HHHHHHHHHhCCCeEEEeCCCCCHHHH----HHHHHcCceEEeeCChhHHHHHHHH
Q 016953 274 TKERIEKLLKAGANVILTTKGIDDMAL----KYFVEAGAIAVRRVRKEDMRHIAKA 325 (380)
Q Consensus 274 l~~~v~~i~~~gv~lVi~~~~I~~~al----~~l~~~~I~vv~~v~~~~l~~la~~ 325 (380)
+++-++.|.+-.+.+|+..+++++... .++.++||.++.--++.+|-+.|-+
T Consensus 18 ~kqt~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V~s~~~LGkAcgi 73 (84)
T PRK13600 18 LKETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKSKHALGKHVGI 73 (84)
T ss_pred HHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHhCC
Confidence 456678888888999999999997654 4567789999988888887766543
No 59
>PRK06683 hypothetical protein; Provisional
Probab=45.19 E-value=1.1e+02 Score=23.04 Aligned_cols=53 Identities=9% Similarity=0.098 Sum_probs=39.2
Q ss_pred HHHHHHHhCCCeEEEeCCCCCHHHHHH----HHHcCceEEeeCChhHHHHHHHHhCCeEc
Q 016953 276 ERIEKLLKAGANVILTTKGIDDMALKY----FVEAGAIAVRRVRKEDMRHIAKATGATMV 331 (380)
Q Consensus 276 ~~v~~i~~~gv~lVi~~~~I~~~al~~----l~~~~I~vv~~v~~~~l~~la~~tGa~ii 331 (380)
..++.|.+..+.+|+.+.+.++...+- +..++|.++..-++ +.|.+++|-++-
T Consensus 18 ~v~kaik~gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~t~---~eLG~A~G~~~~ 74 (82)
T PRK06683 18 RTLEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPITKVESV---RKLGKVAGIQVG 74 (82)
T ss_pred HHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEECCH---HHHHHHhCCccc
Confidence 345677778899999999999866544 57789999776654 556777776553
No 60
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=45.04 E-value=92 Score=24.83 Aligned_cols=51 Identities=10% Similarity=0.131 Sum_probs=37.9
Q ss_pred HHHHHHHhCCCeEEEeCCCCCHH----HHHHHHHcCceEEee-CChhHHHHHHHHhCCe
Q 016953 276 ERIEKLLKAGANVILTTKGIDDM----ALKYFVEAGAIAVRR-VRKEDMRHIAKATGAT 329 (380)
Q Consensus 276 ~~v~~i~~~gv~lVi~~~~I~~~----al~~l~~~~I~vv~~-v~~~~l~~la~~tGa~ 329 (380)
..++.|.+..+.+||.+.+.++. ..+++..++|.++.. -+. +.|.+++|-+
T Consensus 32 ~vlkalk~gkaklViiA~D~~~~~kkki~~~~~~~~Vpv~~~~~t~---~eLG~A~Gk~ 87 (108)
T PTZ00106 32 STLKALRNGKAKLVIISNNCPPIRRSEIEYYAMLSKTGVHHYAGNN---NDLGTACGRH 87 (108)
T ss_pred HHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHhhcCCCEEEeCCCH---HHHHHHhCCc
Confidence 44577777889999999999876 456677789999875 555 4566777744
No 61
>TIGR00129 fdhD_narQ formate dehydrogenase family accessory protein FdhD. FdhD in E. coli and NarQ in B. subtilis are required for the activity of formate dehydrogenase. The gene name in B. subtilis reflects the requirement of the neighboring gene narA for nitrate assimilation, for which NarQ is not required. In some species, the gene is associated not with a known formate dehydrogenase but with a related putative molybdopterin-binding oxidoreductase. A reasonable hypothesis is that this protein helps prepare a required cofactor for assembly into the holoenzyme.
Probab=44.63 E-value=38 Score=31.12 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=38.8
Q ss_pred HHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHH
Q 016953 275 KERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDM 319 (380)
Q Consensus 275 ~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l 319 (380)
.+++.|....|+++|++...-.+.+.++..+.||+.+..++...+
T Consensus 182 ~emv~Ka~~aGIpvlvS~sapT~lavelA~~~giTLigf~R~~r~ 226 (237)
T TIGR00129 182 SEMVQKAARCGVPIIASKSAPTDLAIEVAEESNITLIGFARNGRF 226 (237)
T ss_pred HHHHHHHHHcCCCEEEEcccchHHHHHHHHHhCCEEEEEecCCce
Confidence 455788899999999999999999999999999999988776543
No 62
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=44.59 E-value=94 Score=25.08 Aligned_cols=50 Identities=18% Similarity=0.158 Sum_probs=35.8
Q ss_pred HHHHHHHhCCCeEEEeCCCCCHH-----HHHHHHHcCceEEeeCChhHHHHHHHH
Q 016953 276 ERIEKLLKAGANVILTTKGIDDM-----ALKYFVEAGAIAVRRVRKEDMRHIAKA 325 (380)
Q Consensus 276 ~~v~~i~~~gv~lVi~~~~I~~~-----al~~l~~~~I~vv~~v~~~~l~~la~~ 325 (380)
...+.|.+..+.+|+.+.++++. ..+++.+++|..+..-++++|-+.+-.
T Consensus 33 ~v~kaikkgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~~sk~eLG~a~Gk 87 (117)
T TIGR03677 33 EVTKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYVKKKEDLGAAAGL 87 (117)
T ss_pred HHHHHHHcCCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEeCCHHHHHHHhCC
Confidence 34566677778999999999763 345578889998887777665554443
No 63
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=44.57 E-value=1.2e+02 Score=22.76 Aligned_cols=53 Identities=15% Similarity=0.226 Sum_probs=38.7
Q ss_pred HHHHHHHHhCCCeEEEeCCCCCHHHH----HHHHHcCceEEeeCChhHHHHHHHHhCCeE
Q 016953 275 KERIEKLLKAGANVILTTKGIDDMAL----KYFVEAGAIAVRRVRKEDMRHIAKATGATM 330 (380)
Q Consensus 275 ~~~v~~i~~~gv~lVi~~~~I~~~al----~~l~~~~I~vv~~v~~~~l~~la~~tGa~i 330 (380)
+..++.|.+..+.+|+.+.+.++... +++..++|.++.--++ +.|..++|-..
T Consensus 17 ~~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~s~---~eLG~a~G~~~ 73 (82)
T PRK13602 17 KQTVKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPVSKVDSM---KKLGKACGIEV 73 (82)
T ss_pred HHHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHHcCCCEEEECCH---HHHHHHHCCCc
Confidence 34457777788999999999998654 4567889998777655 45666666544
No 64
>PRK07714 hypothetical protein; Provisional
Probab=44.25 E-value=1.1e+02 Score=23.75 Aligned_cols=51 Identities=10% Similarity=0.094 Sum_probs=36.8
Q ss_pred HHHHHHHhCCCeEEEeCCCCCHHHHHH----HHHcCceEEeeCChhHHHHHHHHhCCe
Q 016953 276 ERIEKLLKAGANVILTTKGIDDMALKY----FVEAGAIAVRRVRKEDMRHIAKATGAT 329 (380)
Q Consensus 276 ~~v~~i~~~gv~lVi~~~~I~~~al~~----l~~~~I~vv~~v~~~~l~~la~~tGa~ 329 (380)
...+.+.+-.+.+||.+.+.++....- +..++|.++...++ +.|..++|-.
T Consensus 25 ~v~~al~~g~~~lViiA~D~s~~~~~ki~~~~~~~~vp~~~~~sk---~eLG~a~Gk~ 79 (100)
T PRK07714 25 LVLKEVRSGKAKLVLLSEDASVNTTKKITDKCTYYNVPMRKVENR---QQLGHAIGKD 79 (100)
T ss_pred HHHHHHHhCCceEEEEeCCCCHHHHHHHHHHHHhcCCCEEEeCCH---HHHHHHhCCC
Confidence 345667777889999999998765544 46679999887666 4566677754
No 65
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=44.05 E-value=64 Score=30.16 Aligned_cols=52 Identities=17% Similarity=0.252 Sum_probs=40.3
Q ss_pred HHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEee-C-----ChhHHHHHHHHhCCe
Q 016953 278 IEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRR-V-----RKEDMRHIAKATGAT 329 (380)
Q Consensus 278 v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~-v-----~~~~l~~la~~tGa~ 329 (380)
+|+|...+|+|||.....++...+.|.+.||.++-- . -.+.++.+++++|..
T Consensus 84 ~E~I~al~PDlIi~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~i~~lg~~~G~~ 141 (289)
T TIGR03659 84 MEKIKSLKPTVVLSVTTLEEDLGPKFKQLGVEATFLNLTSVDGMKKSITELGEKYGRE 141 (289)
T ss_pred HHHHhccCCcEEEEcCcccHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHHHHHhCCH
Confidence 678899999999998888888888899999876532 1 234588888888854
No 66
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=42.63 E-value=1.5e+02 Score=29.20 Aligned_cols=106 Identities=20% Similarity=0.262 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCce-EEeeCChhHHHHHHHHhCC--eEccccc
Q 016953 259 DPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAI-AVRRVRKEDMRHIAKATGA--TMVSTFA 335 (380)
Q Consensus 259 ~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~-vv~~v~~~~l~~la~~tGa--~ii~s~~ 335 (380)
+++++++|. +.+++++++.+++.|..+++...+-....+..+.+-+.- ++-.....++....+..|. .++..++
T Consensus 245 sp~~f~ef~---~P~~k~i~~~i~~~g~~~ilh~cG~~~~~l~~l~~~g~~~v~~~~~~~dl~~ak~~~g~~~~i~GNl~ 321 (378)
T cd03308 245 RPKQFEKFY---WPSFKKVVEGLAARGQRIFLFFEGDWERYLEYLQELPKGKTVGLFEYGDPKKVKEKLGDKKCIAGGFP 321 (378)
T ss_pred CHHHHHHHH---HHHHHHHHHHHHhcCCCEEEEcCCCcHHHHHHHHhcCCCcEEEcCCCCCHHHHHHHhCCCEEEEcCCC
Confidence 466666654 578899999999888777777666666677888887654 4444444788888999995 5565554
Q ss_pred cccCCcCCCCCCcccceeEEE------EEEc-CeeEEEEEcCCCCC
Q 016953 336 DMEGEETFDSSLLGSADEVVE------ERVA-DDDVIMIKGTKTTS 374 (380)
Q Consensus 336 ~l~~~~~~~~~~lG~~~~v~~------~~ig-~~~~~~f~g~~~~~ 374 (380)
.. --..|+-+.+.. ...+ +..|++=.||.-+.
T Consensus 322 p~-------~L~~Gt~e~i~~~v~~~l~~~~~~~gfIl~~gcgi~p 360 (378)
T cd03308 322 TT-------LLKYGTPEECIDYVKELLDTLAPGGGFIFGTDKPIIS 360 (378)
T ss_pred CH-------HHhcCCHHHHHHHHHHHHHHhCCCCCEEEeCCCcCCC
Confidence 31 112355444433 1233 45688888886544
No 67
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=42.25 E-value=1.3e+02 Score=22.68 Aligned_cols=52 Identities=10% Similarity=0.120 Sum_probs=37.1
Q ss_pred HHHHHHHhCCCeEEEeCCCCCHHHHH----HHHHcCceEEeeCChhHHHHHHHHhCCeE
Q 016953 276 ERIEKLLKAGANVILTTKGIDDMALK----YFVEAGAIAVRRVRKEDMRHIAKATGATM 330 (380)
Q Consensus 276 ~~v~~i~~~gv~lVi~~~~I~~~al~----~l~~~~I~vv~~v~~~~l~~la~~tGa~i 330 (380)
..++.|.+..+.+||.+.+.++.... ++..++|.+...-++ +.|.+++|-..
T Consensus 15 ~vlkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~~t~---~eLG~A~G~~v 70 (82)
T PRK13601 15 QTLKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYIDTM---KELGVMCGIDV 70 (82)
T ss_pred HHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEeCCH---HHHHHHHCCcc
Confidence 34567777889999999999976554 456679999755555 45666666543
No 68
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=41.98 E-value=1.3e+02 Score=23.38 Aligned_cols=51 Identities=10% Similarity=0.098 Sum_probs=36.9
Q ss_pred HHHHHHHhCCCeEEEeCCCCCHHH----HHHHHHcCceEEeeC-ChhHHHHHHHHhCCe
Q 016953 276 ERIEKLLKAGANVILTTKGIDDMA----LKYFVEAGAIAVRRV-RKEDMRHIAKATGAT 329 (380)
Q Consensus 276 ~~v~~i~~~gv~lVi~~~~I~~~a----l~~l~~~~I~vv~~v-~~~~l~~la~~tGa~ 329 (380)
...+.+.+..+.+|+.+.+.++.. .+++..++|.++... ++.+ |.+++|-.
T Consensus 23 ~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Ip~~~~~~tk~e---LG~a~Gk~ 78 (99)
T PRK01018 23 RTIKAIKLGKAKLVIVASNCPKDIKEDIEYYAKLSGIPVYEYEGSSVE---LGTLCGKP 78 (99)
T ss_pred HHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCHHH---HHHHhCCC
Confidence 345777778899999999998654 455677899998874 6644 56666643
No 69
>cd00853 NifX NifX belongs to a family of iron-molybdenum cluster-binding proteins that includes NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. The protein is part of the nitrogen fixation gene cluster in nitrogen-fixing bacteria and has sequence similarity to other members of the cluster.
Probab=41.49 E-value=87 Score=24.24 Aligned_cols=38 Identities=21% Similarity=0.321 Sum_probs=30.2
Q ss_pred HHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCC
Q 016953 275 KERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVR 315 (380)
Q Consensus 275 ~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~ 315 (380)
...++.+ .++++|||. +|.+.+...|.++||.++.-..
T Consensus 53 ~~~~~~l--~~~~vvi~~-~iG~~a~~~L~~~GI~v~~~~~ 90 (102)
T cd00853 53 AARLEAL--EDCAILYCA-AIGGPAAARLVRAGIHPIKVPE 90 (102)
T ss_pred HHHHHHH--CCCcEEEEh-hcChhHHHHHHHcCCEEEEcCC
Confidence 3334444 489998887 8999999999999999997655
No 70
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=41.42 E-value=1.5e+02 Score=28.52 Aligned_cols=73 Identities=11% Similarity=0.150 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEeCCCCCHHHHHHHHHcCceEEeeCChh-HHHHHHHHhCCe--Ecccc
Q 016953 259 DPRELEKIRQREADMTKERIEKLLKA-GANVILTTKGIDDMALKYFVEAGAIAVRRVRKE-DMRHIAKATGAT--MVSTF 334 (380)
Q Consensus 259 ~~~~l~~~~~~E~~~l~~~v~~i~~~-gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~-~l~~la~~tGa~--ii~s~ 334 (380)
++++++++. ..+++++++.+++. +..+++...+-....+..+.+.|+-++.--... +++.+.+..|.+ +...+
T Consensus 188 Spe~f~efv---~P~~krIi~~ik~~~g~piilH~cG~~~~~l~~~~e~g~dvl~~d~~~~dl~eak~~~g~k~~l~GNl 264 (321)
T cd03309 188 SPATFREFI---LPRMQRIFDFLRSNTSALIVHHSCGAAASLVPSMAEMGVDSWNVVMTANNTAELRRLLGDKVVLAGAI 264 (321)
T ss_pred CHHHHHHHH---HHHHHHHHHHHHhccCCceEEEeCCCcHHHHHHHHHcCCCEEEecCCCCCHHHHHHHhCCCeEEEcCC
Confidence 456666654 47788889999887 555555444444456777788787776654444 888999999964 44443
No 71
>TIGR02663 nifX nitrogen fixation protein NifX. Members of this family are NifX proteins encoded within operons for nitrogen fixation in a number of bacteria. NifX, NafY, and the C-terminal region of NifB all belong to the Pfam family pfam02579 and are involved in MoFe cofactor biosynthesis. NifX is a nitrogenase accessory protein with a role in expression of the MoFe cofactor.
Probab=41.26 E-value=1e+02 Score=24.71 Aligned_cols=51 Identities=18% Similarity=0.190 Sum_probs=38.0
Q ss_pred HHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCC----hhHHHHHHHHhCC
Q 016953 275 KERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVR----KEDMRHIAKATGA 328 (380)
Q Consensus 275 ~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~----~~~l~~la~~tGa 328 (380)
...++.+ .++++|||. +|.+.+...|.+.||.+++.-. .+-|+++.+..-.
T Consensus 55 ~~~~~~l--~~c~vvi~~-~IG~~a~~~L~~~gI~~~~~~~~~~v~eal~~l~~~~~~ 109 (119)
T TIGR02663 55 APKIEAL--KDCAILYCL-AIGGPAAAKVVAAKIHPIKVNEPESISELLERLQKMLKG 109 (119)
T ss_pred HHHHHHh--CCCcEEEEh-hcCccHHHHHHHcCCeeEecCCCccHHHHHHHHHHHHcC
Confidence 4444545 599999987 8999999999999999997432 4556666666544
No 72
>PRK00724 formate dehydrogenase accessory protein; Reviewed
Probab=40.32 E-value=47 Score=31.00 Aligned_cols=44 Identities=20% Similarity=0.245 Sum_probs=38.5
Q ss_pred HHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhH
Q 016953 275 KERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKED 318 (380)
Q Consensus 275 ~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~ 318 (380)
.+++.|....|+++|++...-...|.++..+.||+.+..++...
T Consensus 211 ~emv~Ka~~aGipvivS~saPT~lAVelA~~~giTLiGf~R~~r 254 (263)
T PRK00724 211 SEMVQKAAMAGIPILVAVSAPTSLAVELAEELGLTLVGFARGGR 254 (263)
T ss_pred HHHHHHHHHcCCcEEEEcccchHHHHHHHHHhCCEEEEEecCCC
Confidence 45578899999999999999999999999999999998876643
No 73
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=39.68 E-value=72 Score=24.30 Aligned_cols=52 Identities=21% Similarity=0.188 Sum_probs=37.9
Q ss_pred HHHHHHHHhCCCeEEEeCCCCCHH-----HHHHHHHcCceEEeeCChhHHHHHHHHhCCe
Q 016953 275 KERIEKLLKAGANVILTTKGIDDM-----ALKYFVEAGAIAVRRVRKEDMRHIAKATGAT 329 (380)
Q Consensus 275 ~~~v~~i~~~gv~lVi~~~~I~~~-----al~~l~~~~I~vv~~v~~~~l~~la~~tGa~ 329 (380)
.+..+.+.+..+.+|+.+.++++. ...++.+++|.++..-++. .|.+++|-.
T Consensus 21 ~~v~k~l~~~~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~~~s~~---eLG~~~g~~ 77 (95)
T PF01248_consen 21 KEVLKALKKGKAKLVILAEDCSPDSIKKHLPALCEEKNIPYVFVPSKE---ELGRACGKK 77 (95)
T ss_dssp HHHHHHHHTTCESEEEEETTSSSGHHHHHHHHHHHHTTEEEEEESHHH---HHHHHTTSS
T ss_pred HHHHHHHHcCCCcEEEEcCCCChhhhcccchhheeccceeEEEECCHH---HHHHHHCCC
Confidence 455677777788999999999763 4457788999998877554 455556554
No 74
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=38.09 E-value=1.6e+02 Score=23.26 Aligned_cols=52 Identities=17% Similarity=0.225 Sum_probs=37.6
Q ss_pred HHHHHHhCCCeEEEeCCCCCHHHHHHH----HHcCceEEeeCChhHHHHHHHHhCCeEc
Q 016953 277 RIEKLLKAGANVILTTKGIDDMALKYF----VEAGAIAVRRVRKEDMRHIAKATGATMV 331 (380)
Q Consensus 277 ~v~~i~~~gv~lVi~~~~I~~~al~~l----~~~~I~vv~~v~~~~l~~la~~tGa~ii 331 (380)
..+.|..-.+.+||.+.+.++....-+ ...+|.++...++++ |..++|=..+
T Consensus 25 v~~aik~gk~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~~t~~e---Lg~a~Gk~~~ 80 (104)
T PRK05583 25 CEEAIKKKKVYLIIISNDISENSKNKFKNYCNKYNIPYIEGYSKEE---LGNAIGRDEI 80 (104)
T ss_pred HHHHHHcCCceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEecCHHH---HHHHhCCCCe
Confidence 346677778999999999987655444 556899988877654 6677775443
No 75
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=37.89 E-value=73 Score=27.39 Aligned_cols=50 Identities=14% Similarity=0.204 Sum_probs=36.1
Q ss_pred HHHHHhCCCeEEEeCCCCCHH-HHHHHHHcCceEE--ee---CC--hhHHHHHHHHhC
Q 016953 278 IEKLLKAGANVILTTKGIDDM-ALKYFVEAGAIAV--RR---VR--KEDMRHIAKATG 327 (380)
Q Consensus 278 v~~i~~~gv~lVi~~~~I~~~-al~~l~~~~I~vv--~~---v~--~~~l~~la~~tG 327 (380)
+++|...+|+|||......+. ..+.|.+.||-++ .. .. .+.++.+.+++|
T Consensus 62 ~E~ll~l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~~~~~~~~~~~~i~~~g~~~g 119 (186)
T cd01141 62 VELIVALKPDLVILYGGFQAQTILDKLEQLGIPVLYVNEYPSPLGRAEWIKFAAAFYG 119 (186)
T ss_pred HHHHhccCCCEEEEecCCCchhHHHHHHHcCCCEEEeCCCCChhhHHHHHHHHHHHcC
Confidence 688999999999986655553 8888999997543 32 11 244777888888
No 76
>PF12846 AAA_10: AAA-like domain
Probab=36.57 E-value=96 Score=28.54 Aligned_cols=58 Identities=21% Similarity=0.276 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhCCCeEEEeCCCCCHHH-----HHHHHHcCceEEeeCChhHHHHHHHHhCCe
Q 016953 272 DMTKERIEKLLKAGANVILTTKGIDDMA-----LKYFVEAGAIAVRRVRKEDMRHIAKATGAT 329 (380)
Q Consensus 272 ~~l~~~v~~i~~~gv~lVi~~~~I~~~a-----l~~l~~~~I~vv~~v~~~~l~~la~~tGa~ 329 (380)
+.+..+++...+.|+.+++....+++.. -..+..-+..++-++...+.+.+++..|.+
T Consensus 240 ~~~~~~~~~~Rk~g~~~~l~tQ~~~~l~~~~~~~~i~~n~~~~i~~~~~~~~~~~l~~~~gl~ 302 (304)
T PF12846_consen 240 EFLDELLREGRKYGVGLILATQSPSDLPKSPIEDAILANCNTKIIFRLEDSDDAELAELFGLT 302 (304)
T ss_pred hhhhHHHHHHHhcCCEEEEeeCCHHHHhccchHHHHHHhCCcEEEecCChHHHHHHHHHcCcC
Confidence 3567888889999999999999999888 788888899999999998888899988864
No 77
>cd01138 FeuA Periplasmic binding protein FeuA. These proteins have predicted to function as initial receptors in ABC transport of metal ions in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=35.73 E-value=93 Score=28.09 Aligned_cols=51 Identities=14% Similarity=0.263 Sum_probs=35.3
Q ss_pred HHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeC----ChhHHHHHHHHhCCe
Q 016953 278 IEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRV----RKEDMRHIAKATGAT 329 (380)
Q Consensus 278 v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v----~~~~l~~la~~tGa~ 329 (380)
+|+|...+|+||++.....+ ..+-|.+.+..++-.. -.+.++.+++++|-.
T Consensus 59 ~E~i~~l~PDlVi~~~~~~~-~~~~l~~~~p~~~~~~~~~~~~~~i~~lg~~~g~~ 113 (248)
T cd01138 59 LEKVLELKPDLIIVSSKQEE-NYEKLSKIAPTVPVSYNSSDWEEQLKEIGKLLNKE 113 (248)
T ss_pred HHHHhccCCCEEEeCCccHH-HHHHHHhhCCEEEEcCCCCCHHHHHHHHHHHhCcH
Confidence 57788889999998876655 6666777764443221 345678888888764
No 78
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=35.02 E-value=1.8e+02 Score=27.94 Aligned_cols=72 Identities=26% Similarity=0.334 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHhCC--eEcccc
Q 016953 259 DPRELEKIRQREADMTKERIEKLLKA--GANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGA--TMVSTF 334 (380)
Q Consensus 259 ~~~~l~~~~~~E~~~l~~~v~~i~~~--gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa--~ii~s~ 334 (380)
+++++++|. +.+++++++.+++. +++++...++-. ..+.++.+.|+-++..-...++....+.+|. .+...+
T Consensus 205 sp~~f~ef~---~P~~k~i~~~i~~~~~~~~ilh~cg~~~-~~~~~~~~~~~~~~s~d~~~dl~e~k~~~g~~~~i~Gni 280 (335)
T cd00717 205 SPEDFEEFV---LPYLKRIIEEVKKRLPGVPVILFAKGAG-GLLEDLAQLGADVVGLDWRVDLDEARKRLGPKVALQGNL 280 (335)
T ss_pred CHHHHHHHH---HHHHHHHHHHHHHhCCCCCEEEEcCCCH-HHHHHHHhcCCCEEEeCCCCCHHHHHHHhCCCeEEEeCC
Confidence 456666655 57888899999987 566665444554 5688888888777655455688888888984 455544
No 79
>COG1526 FdhD Uncharacterized protein required for formate dehydrogenase activity [Energy production and conversion]
Probab=34.47 E-value=61 Score=30.31 Aligned_cols=45 Identities=20% Similarity=0.228 Sum_probs=38.9
Q ss_pred HHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHH
Q 016953 275 KERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDM 319 (380)
Q Consensus 275 ~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l 319 (380)
.++|.|....|++++++--.....+.++..+.||+.+..++...+
T Consensus 211 ~EmV~Kaa~~Gipil~S~SAPT~Lai~~Ae~~~iTLvgf~R~~~f 255 (266)
T COG1526 211 SEMVQKAAMAGIPILASVSAPTSLAIEAAERLGLTLVGFVRGGRF 255 (266)
T ss_pred HHHHHHHHHhCCcEEEEcccchHHHHHHHHHcCCEEEEEecCCcc
Confidence 345788889999999999999999999999999999988776544
No 80
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=33.85 E-value=1.4e+02 Score=28.64 Aligned_cols=59 Identities=19% Similarity=0.235 Sum_probs=44.7
Q ss_pred HHHHHHHHHhCCCeEEEeCCCCC-HHHHHHHHHcCceEEeeCChhHHHHHHHHhCCeEcc
Q 016953 274 TKERIEKLLKAGANVILTTKGID-DMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVS 332 (380)
Q Consensus 274 l~~~v~~i~~~gv~lVi~~~~I~-~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa~ii~ 332 (380)
+...++.+.+.++++|.+.-+.. +...+.+...|+.++-.+..-.--+.+.-.|+..+-
T Consensus 102 ~~~~~~~~~~~~~~~v~~~~G~p~~~~i~~l~~~gi~v~~~v~s~~~A~~a~~~G~D~iv 161 (330)
T PF03060_consen 102 FEEQLDVALEAKPDVVSFGFGLPPPEVIERLHAAGIKVIPQVTSVREARKAAKAGADAIV 161 (330)
T ss_dssp HHHHHHHHHHS--SEEEEESSSC-HHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEE
T ss_pred cccccccccccceEEEEeecccchHHHHHHHHHcCCccccccCCHHHHHHhhhcCCCEEE
Confidence 56778888888999999988888 888999999999999887666666667777887763
No 81
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=33.29 E-value=2.1e+02 Score=27.09 Aligned_cols=106 Identities=20% Similarity=0.302 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHhCC--eEccccccc
Q 016953 260 PRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGA--TMVSTFADM 337 (380)
Q Consensus 260 ~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa--~ii~s~~~l 337 (380)
+++++++. ..+++++++.+++.|..+++..-+-....++++.+.|+-++..-...++..+.+..|. .+...++..
T Consensus 199 p~~f~e~~---~p~~k~i~~~i~~~g~~~~lH~cG~~~~~~~~l~~~~~d~~~~d~~~dl~~~~~~~g~~~~i~G~id~~ 275 (330)
T cd03465 199 PEDFKEFS---LPYLKKVFDAIKALGGPVIHHNCGDTAPILELMADLGADVFSIDVTVDLAEAKKKVGDKACLMGNLDPI 275 (330)
T ss_pred HHHHHHHh---hHHHHHHHHHHHHcCCceEEEECCCchhHHHHHHHhCCCeEeecccCCHHHHHHHhCCceEEEeCcChH
Confidence 44555443 5778888999988777666533333445678888888877776555588888888984 455544321
Q ss_pred cCCcCCCCCCcccceeEEEE------EEcC--eeEEEEEcCCCCC
Q 016953 338 EGEETFDSSLLGSADEVVEE------RVAD--DDVIMIKGTKTTS 374 (380)
Q Consensus 338 ~~~~~~~~~~lG~~~~v~~~------~ig~--~~~~~f~g~~~~~ 374 (380)
..-..|+.+.+... ..++ ..|++=.||.-+.
T Consensus 276 ------~~l~~gt~eei~~~v~~~l~~~~~~~~~~il~~gc~i~~ 314 (330)
T cd03465 276 ------DVLLNGSPEEIKEEVKELLEKLLKGGGGYILSSGCEIPP 314 (330)
T ss_pred ------HhhcCCCHHHHHHHHHHHHHHHhCCCCCEEEeCCCCCCC
Confidence 01123544433221 1222 5777777887543
No 82
>cd01146 FhuD Fe3+-siderophore binding domain FhuD. These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA-like protein is comprised of two globular subdomains connected by a long alpha helix and binds its specific ligands in the cleft between these domains.
Probab=33.22 E-value=1.3e+02 Score=27.34 Aligned_cols=52 Identities=19% Similarity=0.252 Sum_probs=36.3
Q ss_pred HHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCC--hh----HHHHHHHHhCCe
Q 016953 278 IEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVR--KE----DMRHIAKATGAT 329 (380)
Q Consensus 278 v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~--~~----~l~~la~~tGa~ 329 (380)
+++|.+.+|+|||......+...+.|.+.+..++-..+ .+ .++.+++++|..
T Consensus 58 ~E~i~~l~PDlii~~~~~~~~~~~~l~~~~p~v~~~~~~~~~~~~~~i~~lg~~~g~~ 115 (256)
T cd01146 58 LEAIAALKPDLILGSASRHDEIYDQLSQIAPTVLLDSSPWLAEWKENLRLIAKALGKE 115 (256)
T ss_pred HHHHHhcCCCEEEeecccchhHHHHHHhhCCEEEecCCCcHHHHHHHHHHHHHHhCcH
Confidence 57788999999999887776566667666544444432 23 477888888865
No 83
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=31.30 E-value=1e+02 Score=27.23 Aligned_cols=46 Identities=17% Similarity=0.185 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcC----ceEEeeCChh
Q 016953 272 DMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAG----AIAVRRVRKE 317 (380)
Q Consensus 272 ~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~----I~vv~~v~~~ 317 (380)
..+++.++.+++.++++|+++.+.++..--.|..-. |.++..++..
T Consensus 76 p~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~sn~ 125 (220)
T COG4359 76 PGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVSNN 125 (220)
T ss_pred ccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEeecC
Confidence 458899999999999999999999988877777665 8887776553
No 84
>PF02634 FdhD-NarQ: FdhD/NarQ family; InterPro: IPR003786 Formate dehydrogenase is required for nitrate inducible formate dehydrogenase activity. In Wolinella succinogenes it is a membranous molybdo-enzyme which is involved in phosphorylative electron transport. The functional formate dehydrogenase may be made up of three or four different subunits []. In Escherichia coli, FdhD is required for the formation of active formate dehydrogenases.; GO: 0008863 formate dehydrogenase (NAD+) activity, 0009326 formate dehydrogenase complex; PDB: 2PW9_D.
Probab=31.20 E-value=64 Score=29.53 Aligned_cols=42 Identities=21% Similarity=0.296 Sum_probs=31.2
Q ss_pred HHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCCh
Q 016953 275 KERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRK 316 (380)
Q Consensus 275 ~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~ 316 (380)
.+++.|....|+++|++...-...+.++..+.||+.+..++.
T Consensus 182 ~emv~Ka~~aGipvivS~sapT~~av~~A~~~gitLigf~R~ 223 (236)
T PF02634_consen 182 SEMVQKAARAGIPVIVSRSAPTSLAVELARKLGITLIGFARG 223 (236)
T ss_dssp HHHHHHHHHHT-SEEEESS-B-HHHHHHHHHHT-EEEEEEET
T ss_pred HHHHHHHHHcCCCEEEEcccccHHHHHHHHHhCCEEEEEecC
Confidence 345777888899999999999999999999999998876654
No 85
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=29.54 E-value=1.8e+02 Score=26.21 Aligned_cols=57 Identities=19% Similarity=0.258 Sum_probs=48.0
Q ss_pred HHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEE-eeCChhHHHHHHHHhCCeEcccc
Q 016953 276 ERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAV-RRVRKEDMRHIAKATGATMVSTF 334 (380)
Q Consensus 276 ~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv-~~v~~~~l~~la~~tGa~ii~s~ 334 (380)
+.++...+.|++.+++- +.++...+++.+++|..+ ......|+.. +.-.|+.++-=+
T Consensus 78 ~~a~~a~~aGA~FivsP-~~~~~vi~~a~~~~i~~iPG~~TptEi~~-a~~~Ga~~vKlF 135 (212)
T PRK05718 78 EQLAQAIEAGAQFIVSP-GLTPPLLKAAQEGPIPLIPGVSTPSELML-GMELGLRTFKFF 135 (212)
T ss_pred HHHHHHHHcCCCEEECC-CCCHHHHHHHHHcCCCEeCCCCCHHHHHH-HHHCCCCEEEEc
Confidence 34677889999998887 788899999999999999 8888888766 778899988543
No 86
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=29.40 E-value=2.5e+02 Score=26.92 Aligned_cols=72 Identities=25% Similarity=0.327 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHhCC--eEcccc
Q 016953 259 DPRELEKIRQREADMTKERIEKLLKA--GANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGA--TMVSTF 334 (380)
Q Consensus 259 ~~~~l~~~~~~E~~~l~~~v~~i~~~--gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa--~ii~s~ 334 (380)
+++++++|. +.+++++++.+++. +++++...++.. ..+.++.+.++-++..-...++....+..|. .++..+
T Consensus 208 sp~~f~ef~---~p~~k~i~~~i~~~~~~~~ilh~cg~~~-~~~~~~~~~~~~~~s~d~~~dl~e~~~~~~~~~~i~Gni 283 (338)
T TIGR01464 208 SPEDFEEFV---LPYLKKIIEEVKARLPNVPVILFAKGAG-HLLEELAETGADVVGLDWTVDLKEARKRVGPGVAIQGNL 283 (338)
T ss_pred CHHHHHHHH---HHHHHHHHHHHHHhCCCCCEEEEeCCcH-HHHHHHHhcCCCEEEeCCCCCHHHHHHHhCCCeeEEeCC
Confidence 356666654 57888889998886 566665555655 4577788888888765556788888999986 455554
No 87
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=28.24 E-value=75 Score=25.97 Aligned_cols=42 Identities=24% Similarity=0.343 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhCCCeEEEeCCCC--CHHHHHHHHHcCceEEee
Q 016953 272 DMTKERIEKLLKAGANVILTTKGI--DDMALKYFVEAGAIAVRR 313 (380)
Q Consensus 272 ~~l~~~v~~i~~~gv~lVi~~~~I--~~~al~~l~~~~I~vv~~ 313 (380)
+..++.++++...+++.||.+.+. ++...+.+.++++.+++-
T Consensus 68 ~~r~~~l~~l~~~~~P~iIvt~~~~~p~~l~e~a~~~~ipll~t 111 (127)
T PF02603_consen 68 EERKERLEKLFSYNPPCIIVTRGLEPPPELIELAEKYNIPLLRT 111 (127)
T ss_dssp HHHCCHHHHHCTTT-S-EEEETTT---HHHHHHHHHCT--EEEE
T ss_pred HHHHHHHHHHhCCCCCEEEEECcCCCCHHHHHHHHHhCCcEEEc
Confidence 345677889999999988887766 688899999999998864
No 88
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=27.69 E-value=2.6e+02 Score=21.73 Aligned_cols=63 Identities=14% Similarity=0.073 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhCCCeEEEeC-----------------C--CCCHHHHHHHHHcCceEEeeCC--------hhHHHHHHHH
Q 016953 273 MTKERIEKLLKAGANVILTT-----------------K--GIDDMALKYFVEAGAIAVRRVR--------KEDMRHIAKA 325 (380)
Q Consensus 273 ~l~~~v~~i~~~gv~lVi~~-----------------~--~I~~~al~~l~~~~I~vv~~v~--------~~~l~~la~~ 325 (380)
.+.+.++++.+.|.++.-+. + .=++.+.+++.+..+..+=+.. ...++|.|.-
T Consensus 14 ~~~~~~~~l~~~G~~l~aT~gT~~~l~~~gi~~~~v~~~~~~~~~i~~~i~~~~id~vIn~~~~~~~~~~~~~iRR~Av~ 93 (110)
T cd01424 14 EAVEIAKRLAELGFKLVATEGTAKYLQEAGIPVEVVNKVSEGRPNIVDLIKNGEIQLVINTPSGKRAIRDGFSIRRAALE 93 (110)
T ss_pred HHHHHHHHHHHCCCEEEEchHHHHHHHHcCCeEEEEeecCCCchhHHHHHHcCCeEEEEECCCCCccCccHHHHHHHHHH
Confidence 45566666666666664332 1 1235666666666666554422 3568888888
Q ss_pred hCCeEccccc
Q 016953 326 TGATMVSTFA 335 (380)
Q Consensus 326 tGa~ii~s~~ 335 (380)
.|.+++++++
T Consensus 94 ~~ipl~T~~~ 103 (110)
T cd01424 94 YKVPYFTTLD 103 (110)
T ss_pred hCCCEEecHH
Confidence 8888876653
No 89
>cd01139 TroA_f Periplasmic binding protein TroA_f. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=27.45 E-value=1.6e+02 Score=28.15 Aligned_cols=52 Identities=23% Similarity=0.266 Sum_probs=36.8
Q ss_pred HHHHHhCCCeEEEeCCCC-----CHHHHHHHHHcCceEEeeC--------ChhHHHHHHHHhCCe
Q 016953 278 IEKLLKAGANVILTTKGI-----DDMALKYFVEAGAIAVRRV--------RKEDMRHIAKATGAT 329 (380)
Q Consensus 278 v~~i~~~gv~lVi~~~~I-----~~~al~~l~~~~I~vv~~v--------~~~~l~~la~~tGa~ 329 (380)
+++|.+.+|+|||..... +....+.|.+.||.++--- -.+.++.+++++|-.
T Consensus 84 ~E~l~~l~PDLIi~~~~~~~~~~~~~~~~~l~~~gipvv~~~~~~~~~~~~~~~i~~lg~i~g~~ 148 (342)
T cd01139 84 VEKVLTLKPDLVILNIWAKTTAEESGILEKLEQAGIPVVFVDFRQKPLKNTTPSMRLLGKALGRE 148 (342)
T ss_pred HHHHhhcCCCEEEEeccccccchhhHHHHHHHHcCCcEEEEeCCCchhhhHHHHHHHHHHHhCCH
Confidence 578888899999986544 3457778888887765421 144588888888863
No 90
>cd01140 FatB Siderophore binding protein FatB. These proteins have been shown to function as ABC-type initial receptors in the siderophore-mediated iron uptake in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=27.15 E-value=1.6e+02 Score=26.81 Aligned_cols=52 Identities=13% Similarity=0.148 Sum_probs=35.2
Q ss_pred HHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCC-------hhHHHHHHHHhCCe
Q 016953 278 IEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVR-------KEDMRHIAKATGAT 329 (380)
Q Consensus 278 v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~-------~~~l~~la~~tGa~ 329 (380)
+|+|.+.+|+||+....-.+...+.....++.++..-. .+.++.++.++|-.
T Consensus 65 ~E~i~al~PDlvi~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~lg~~~g~~ 123 (270)
T cd01140 65 LEAIAALKPDLIIIGGRLAEKYDELKKIAPTIDLGADLKNYLESVKQNIETLGKIFGKE 123 (270)
T ss_pred HHHHhcCCCCEEEECCccHHHHHHHHHhCCeeEEecCchHHHHHHHHHHHHHHHHhCcH
Confidence 57888899999998755555555555566766664211 23588888888853
No 91
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=26.88 E-value=2.9e+02 Score=22.37 Aligned_cols=50 Identities=10% Similarity=0.093 Sum_probs=37.3
Q ss_pred HHHHHHHHhCCCeEEEeCCCCCH-----HHHHHHHHcCceEEeeCChhHHHHHHH
Q 016953 275 KERIEKLLKAGANVILTTKGIDD-----MALKYFVEAGAIAVRRVRKEDMRHIAK 324 (380)
Q Consensus 275 ~~~v~~i~~~gv~lVi~~~~I~~-----~al~~l~~~~I~vv~~v~~~~l~~la~ 324 (380)
+..++.|.+-.+.+|+.+.+++| ....+|.++||..+---++.+|-+.+-
T Consensus 33 ~e~~Kai~~g~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~V~sk~~LG~a~g 87 (116)
T COG1358 33 NEVTKAIERGKAKLVVIAEDVSPEELVKHLPALCEEKNVPYVYVGSKKELGKAVG 87 (116)
T ss_pred HHHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHhcCCCEEEeCCHHHHHHHhC
Confidence 44556677777899999999993 334567778999998888877766554
No 92
>PRK03379 vitamin B12-transporter protein BtuF; Provisional
Probab=26.68 E-value=1.7e+02 Score=26.90 Aligned_cols=52 Identities=12% Similarity=0.226 Sum_probs=36.4
Q ss_pred HHHHHhCCCeEEEeCCC-CCHHHHHHHHHcCceEEeeC--Ch----hHHHHHHHHhCCe
Q 016953 278 IEKLLKAGANVILTTKG-IDDMALKYFVEAGAIAVRRV--RK----EDMRHIAKATGAT 329 (380)
Q Consensus 278 v~~i~~~gv~lVi~~~~-I~~~al~~l~~~~I~vv~~v--~~----~~l~~la~~tGa~ 329 (380)
+|+|...+|+||+...+ -.+...+.|.+.||.++.-- +. +.++.+++++|-.
T Consensus 65 ~E~il~l~PDlVi~~~~~~~~~~~~~L~~~gi~v~~~~~~~~~~~~~~i~~lg~~~g~~ 123 (260)
T PRK03379 65 LERIVALKPDLVLAWRGGNAERQVDQLASLGIKVMWVDATSIEQIANALRQLAPWSPQP 123 (260)
T ss_pred HHHHHhcCCCEEEEecCCCcHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHcCCH
Confidence 57788899999998644 34567788899998876541 22 3466777777753
No 93
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=26.41 E-value=1.1e+02 Score=29.23 Aligned_cols=106 Identities=23% Similarity=0.320 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHhCC--eEccccc
Q 016953 259 DPRELEKIRQREADMTKERIEKLLKAGA-NVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGA--TMVSTFA 335 (380)
Q Consensus 259 ~~~~l~~~~~~E~~~l~~~v~~i~~~gv-~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa--~ii~s~~ 335 (380)
|++.++++. ..+++++++.+++.|. .+++..-+-....+..+.+.|+-++..-...++....+..|. .+...++
T Consensus 210 sp~~f~e~~---~P~~k~i~~~i~~~g~~~~~lH~cG~~~~~~~~l~~~g~d~~~~~~~~~~~~~~~~~~~~~~l~Gni~ 286 (343)
T PF01208_consen 210 SPEMFEEFI---LPYLKKIIDAIKEAGKDPVILHICGNTTPILDDLADLGADVLSVDEKVDLAEAKRKLGDKIVLMGNID 286 (343)
T ss_dssp -HHHHHHHT---HHHHHHHHHHHHHHETE-EEEEETTHG-GGHHHHHTSS-SEEEE-TTS-HHHHHHHHTTSSEEEEEB-
T ss_pred CHHHHHHHH---HHHHHHHHHHHHHhCCCceEEEECCchHHHHHHHHhcCCCEEEEcCCCCHHHHHHHhCCCeEEECCCC
Confidence 355666655 4788999999999987 666554444445888888999888887777788777776643 3444443
Q ss_pred cccCCcCCCCCCcccceeEEEE--------EEcCeeEEEEEcCCCCC
Q 016953 336 DMEGEETFDSSLLGSADEVVEE--------RVADDDVIMIKGTKTTS 374 (380)
Q Consensus 336 ~l~~~~~~~~~~lG~~~~v~~~--------~ig~~~~~~f~g~~~~~ 374 (380)
.. .-..|+-+.++.. .-++..|++=.||.-|.
T Consensus 287 ~~-------~~l~gt~eei~~~v~~~i~~~~~~~~gfIl~~gc~ip~ 326 (343)
T PF01208_consen 287 PV-------SLLFGTPEEIEEEVKRLIEEGLAGGGGFILSPGCGIPP 326 (343)
T ss_dssp G--------GGGGS-HHHHHHHHHHHHHHTHCTSSSEEBEBSS---T
T ss_pred cc-------ccccCCHHHHHHHHHHHHHHhcCCCCCEEEeCCCcCCC
Confidence 21 0122554444331 12355677666775544
No 94
>cd01149 HutB Hemin binding protein HutB. These proteins have been shown to function as initial receptors in ABC transport of hemin and hemoproteins in many eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=26.38 E-value=1.9e+02 Score=25.89 Aligned_cols=52 Identities=21% Similarity=0.259 Sum_probs=36.8
Q ss_pred HHHHHhCCCeEEEeCCC-CCHHHHHHHHHcCceEEee--C-----ChhHHHHHHHHhCCe
Q 016953 278 IEKLLKAGANVILTTKG-IDDMALKYFVEAGAIAVRR--V-----RKEDMRHIAKATGAT 329 (380)
Q Consensus 278 v~~i~~~gv~lVi~~~~-I~~~al~~l~~~~I~vv~~--v-----~~~~l~~la~~tGa~ 329 (380)
+++|.+.+|+||+.... .++...+.|.+.||.++-. . -.+.++.++.++|-.
T Consensus 51 ~E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gipvv~~~~~~~~~~~~~~~~~lg~i~g~e 110 (235)
T cd01149 51 AEGVLSLKPTLVIASDEAGPPEALDQLRAAGVPVVTVPSTPTLDGLLTKIRQVAQALGVP 110 (235)
T ss_pred HHHhhccCCCEEEEcCCCCCHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHHHHHhCCH
Confidence 47888999999999664 4556778899999876542 1 233466777777764
No 95
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=26.36 E-value=2.3e+02 Score=25.01 Aligned_cols=52 Identities=25% Similarity=0.355 Sum_probs=39.5
Q ss_pred HHHHHhCCCeEEEeCCCC-CHHHHHHHHHcCceEEeeCC-------hhHHHHHHHHhCCe
Q 016953 278 IEKLLKAGANVILTTKGI-DDMALKYFVEAGAIAVRRVR-------KEDMRHIAKATGAT 329 (380)
Q Consensus 278 v~~i~~~gv~lVi~~~~I-~~~al~~l~~~~I~vv~~v~-------~~~l~~la~~tGa~ 329 (380)
+++|.+.+|+|||..... ......-+.+.+|-++---. .+.++.++.++|..
T Consensus 53 ~E~i~~l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~i~~lg~~~g~~ 112 (238)
T PF01497_consen 53 LEAILALKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSSPFDDWKEQIRQLGKALGKE 112 (238)
T ss_dssp HHHHHHT--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTTCSHHHHHHHHHHHHHHTSH
T ss_pred HHHHHhCCCCEEEEeccccchHHHHHHhcccceEEEeecccchHHHHHHHHHHHHhcccH
Confidence 377888899999998888 77777888888988775432 35788899999976
No 96
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=26.35 E-value=3.5e+02 Score=21.80 Aligned_cols=50 Identities=22% Similarity=0.414 Sum_probs=42.7
Q ss_pred HHHhCCCeEEEeCCCC------CHHHHHHHHHcCceEEeeCChhHHHHHHHHhCCe
Q 016953 280 KLLKAGANVILTTKGI------DDMALKYFVEAGAIAVRRVRKEDMRHIAKATGAT 329 (380)
Q Consensus 280 ~i~~~gv~lVi~~~~I------~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa~ 329 (380)
.+.+.++.+|++.-++ ++.|..+|.+.++-++..-..+.++|.-..-|++
T Consensus 56 ~~lee~~E~ivvGTG~~G~l~l~~ea~e~~r~k~~~vi~~pT~EAikr~nel~~~k 111 (121)
T COG1504 56 ELLEEGPEVIVVGTGQSGMLELSEEAREFFRKKGCEVIELPTPEAIKRYNELRGKK 111 (121)
T ss_pred HHHhcCCcEEEEecCceeEEEeCHHHHHHHHhcCCeEEEeCCHHHHHHHHHHhccc
Confidence 3444789999987665 7999999999999999999999999999988864
No 97
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=26.33 E-value=1.3e+02 Score=26.90 Aligned_cols=67 Identities=16% Similarity=0.222 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCC----hhHHHHHHHHhCCeEcccc
Q 016953 268 QREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVR----KEDMRHIAKATGATMVSTF 334 (380)
Q Consensus 268 ~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~----~~~l~~la~~tGa~ii~s~ 334 (380)
++|++++.+.++.+.+...++.++=...++.+.+...++|+-++-++. .+.+-.++.-.|+.++--.
T Consensus 53 ~eE~~rl~~~l~~i~~~~~~~plSIDT~~~~v~~~aL~~g~~~ind~~~~~~~~~~~~l~a~~~~~vV~m~ 123 (210)
T PF00809_consen 53 EEEMERLVPVLQAIREENPDVPLSIDTFNPEVAEAALKAGADIINDISGFEDDPEMLPLAAEYGAPVVLMH 123 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHTSSEEEETTTTSSSTTHHHHHHHHTSEEEEES
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCHHHHHHHHHcCcceEEecccccccchhhhhhhcCCCEEEEEe
Confidence 467788999999998755667777777788888887777888887753 4457777777888887543
No 98
>PRK04247 hypothetical protein; Provisional
Probab=26.28 E-value=2.1e+02 Score=26.31 Aligned_cols=30 Identities=23% Similarity=0.220 Sum_probs=27.3
Q ss_pred CCCeEEEeCCCCCHHHHHHHHHcCceEEee
Q 016953 284 AGANVILTTKGIDDMALKYFVEAGAIAVRR 313 (380)
Q Consensus 284 ~gv~lVi~~~~I~~~al~~l~~~~I~vv~~ 313 (380)
..+.-|+++.+|++.|..+|.++|+-++.-
T Consensus 204 ~~VRGilvAp~i~~~A~~ll~~~Gle~~~l 233 (238)
T PRK04247 204 DKVRGILVAPSITDRARRLLEKEGLEFVKL 233 (238)
T ss_pred CCcEEEEECCcCCHHHHHHHHHcCCeEEEe
Confidence 578899999999999999999999988764
No 99
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=25.58 E-value=4.6e+02 Score=23.51 Aligned_cols=56 Identities=13% Similarity=0.083 Sum_probs=45.2
Q ss_pred HHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEE-eeCChhHHHHHHHHhCCeEccc
Q 016953 276 ERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAV-RRVRKEDMRHIAKATGATMVST 333 (380)
Q Consensus 276 ~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv-~~v~~~~l~~la~~tGa~ii~s 333 (380)
+.+++.++.|++.+++ .+.++...+++.++|+.++ .....+|+.+. .-.|++++.=
T Consensus 79 ~~~~~a~~aGA~Fivs-P~~~~~v~~~~~~~~i~~iPG~~T~~E~~~A-~~~Gad~vkl 135 (213)
T PRK06552 79 VTARLAILAGAQFIVS-PSFNRETAKICNLYQIPYLPGCMTVTEIVTA-LEAGSEIVKL 135 (213)
T ss_pred HHHHHHHHcCCCEEEC-CCCCHHHHHHHHHcCCCEECCcCCHHHHHHH-HHcCCCEEEE
Confidence 4567888899998885 5999999999999999988 45677777665 4689988863
No 100
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=25.40 E-value=3.6e+02 Score=24.05 Aligned_cols=32 Identities=19% Similarity=0.433 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHcCceEE---eeCChhHHHHHHHHh
Q 016953 295 IDDMALKYFVEAGAIAV---RRVRKEDMRHIAKAT 326 (380)
Q Consensus 295 I~~~al~~l~~~~I~vv---~~v~~~~l~~la~~t 326 (380)
.+..+.+++.+.|+..+ .-++.++++.|++.+
T Consensus 48 ~N~~s~~~~~~~G~~~i~ls~EL~~~ei~~i~~~~ 82 (233)
T PF01136_consen 48 FNSESARFLKELGASRITLSPELSLEEIKEIAENS 82 (233)
T ss_pred CCHHHHHHHHHcCCCEEEECccCCHHHHHHHHHhC
Confidence 36777777887764433 448999999999998
No 101
>cd00636 TroA-like Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface between two globular domains linked by a single helix. Many of these proteins also possess a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence). The TroA-like proteins differ in their fold and ligand-binding mechanism from the PBPI and PBPII proteins, but are structurally similar, however, to the beta-subunit of the nitrogenase molybdenum-iron protein MoFe. Most TroA-like proteins are encoded by ABC-type operons and appear to function as periplasmic components of ABC transporters in metal ion uptake.
Probab=24.95 E-value=1.9e+02 Score=22.62 Aligned_cols=35 Identities=14% Similarity=0.119 Sum_probs=25.9
Q ss_pred HHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEe
Q 016953 278 IEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVR 312 (380)
Q Consensus 278 v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~ 312 (380)
.+.|...++++|+..+...+...+.+.+.||.++.
T Consensus 54 ~E~l~~l~pDlvi~~~~~~~~~~~~l~~~~i~~~~ 88 (148)
T cd00636 54 LEKIAALKPDLIIANGSGLEAWLDKLSKIAIPVVV 88 (148)
T ss_pred HHHHhccCCCEEEEecccchhHHHHHHHhCCCEEE
Confidence 46677779999999887766667778888755443
No 102
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=24.42 E-value=2.5e+02 Score=22.59 Aligned_cols=43 Identities=21% Similarity=0.178 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhCCCeEEEeCCC-----CCHHHHHHHHHcCceEEeeCC
Q 016953 273 MTKERIEKLLKAGANVILTTKG-----IDDMALKYFVEAGAIAVRRVR 315 (380)
Q Consensus 273 ~l~~~v~~i~~~gv~lVi~~~~-----I~~~al~~l~~~~I~vv~~v~ 315 (380)
.+.++++.+.+.|+.-+....+ +++.+.+++.+.++.++.--.
T Consensus 60 ~~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~i~~A~~~~lPli~ip~ 107 (123)
T PF07905_consen 60 ELREFIRELAEKGAAGLGIKTGRYLDEIPEEIIELADELGLPLIEIPW 107 (123)
T ss_pred HHHHHHHHHHHCCCeEEEEeccCccccCCHHHHHHHHHcCCCEEEeCC
Confidence 4677789999999876666555 999999999999998887533
No 103
>PF01300 Sua5_yciO_yrdC: Telomere recombination; InterPro: IPR006070 The YrdC family of hypothetical proteins are widely distributed in eukaryotes and prokaryotes and occur as: (i) independent proteins, (ii) with C-terminal extensions, and (iii) as domains in larger proteins, some of which are implicated in regulation []. The YrdC protein, which consists solely of this domain, forms an alpha/beta twisted open-sheet structure composed of seven alpha helices and seven beta strands []. YrdC from Escherichia coli preferentially binds to double-stranded RNA and DNA. YrdC is predicted to be an rRNA maturation factor, as deletions in its gene lead to immature ribosomal 30S subunits and, consequently, fewer translating ribosomes []. Therefore, YrdC may function by keeping an rRNA structure needed for proper processing of 16S rRNA, especially at lower temperatures. Sua5 is an example of a multi-domain protein that contains an N-terminal YrdC-like domain and a C-terminal Sua5 domain. Sua5 was identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a translation initiation defect in the cytochrome c gene and is required for normal growth in yeast; however its exact function remains unknown []. HypF is involved in the synthesis of the active site of [NiFe]-hydrogenases [].; PDB: 3L7V_A 1KK9_A 1K7J_A 3TTD_A 3TSQ_A 3TTC_A 3TSP_A 3TTF_A 3TSU_A 2EQA_A ....
Probab=24.14 E-value=1.7e+02 Score=25.22 Aligned_cols=86 Identities=23% Similarity=0.330 Sum_probs=52.1
Q ss_pred eEEEEcCHHHHHHHHH-HHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHhCCeEc
Q 016953 253 VQVLVTDPRELEKIRQ-READMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMV 331 (380)
Q Consensus 253 ~~i~i~~~~~l~~~~~-~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa~ii 331 (380)
..+.+.+.+++..+.. ...+.+.+.+++.----..+|+-...-. ....+....+-.+++..+...++.+++.+|..++
T Consensus 44 l~ll~~~~~~l~~~~~~~~~~~~~~l~~~~wPgp~t~I~~~~~~~-l~~~~~~~~~ti~vRip~~~~~~~l~~~~g~Pl~ 122 (179)
T PF01300_consen 44 LILLVSSIEQLEEYVDSPVSPKARRLLEKFWPGPLTLILPAKKEN-LPKYLTSKRGTIGVRIPDHPILRELLEALGGPLI 122 (179)
T ss_dssp -EEEESSHHHHHHHEETT--HHHHHHHHHCHSSSEEEEEEEGTTC-SHHHHHTTTSEEEEECHCSHHHHHHHHHHTS-EE
T ss_pred EEEEECCHHHHHHHhhccccHHHHHHHHhccccCeeEeecccccc-CChhhcCCCCeEEEEecChHHHHHHHHhcCCceE
Confidence 3455677888888765 2233344444443332344555531211 2222245678889999999999999999999888
Q ss_pred cccccccC
Q 016953 332 STFADMEG 339 (380)
Q Consensus 332 ~s~~~l~~ 339 (380)
++-.+++.
T Consensus 123 ~TSAN~sg 130 (179)
T PF01300_consen 123 STSANLSG 130 (179)
T ss_dssp EEESSSTT
T ss_pred eccccccc
Confidence 87666654
No 104
>PRK10343 RNA-binding protein YhbY; Provisional
Probab=23.83 E-value=1.7e+02 Score=22.89 Aligned_cols=59 Identities=17% Similarity=0.156 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHH----cC---ceEEee---CChhHHHHHHHHhCCeEcc
Q 016953 271 ADMTKERIEKLLKAGANVILTTKGIDDMALKYFVE----AG---AIAVRR---VRKEDMRHIAKATGATMVS 332 (380)
Q Consensus 271 ~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~----~~---I~vv~~---v~~~~l~~la~~tGa~ii~ 332 (380)
+.+|+.+... .+|-+-|=.+|+++.++.-+.+ +. |-+... -+++..+.||..|||.++.
T Consensus 8 r~~LR~~ah~---l~Pvv~IGk~Glt~~vi~ei~~aL~~hELIKvkv~~~~~~~~~e~~~~i~~~~~ae~Vq 76 (97)
T PRK10343 8 KQHLKGLAHP---LKPVVLLGSNGLTEGVLAEIEQALEHHELIKVKIATEDRETKTLIVEAIVRETGACNVQ 76 (97)
T ss_pred HHHHHHhcCC---CCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEecCCChhHHHHHHHHHHHHHCCEEEe
Confidence 4444444333 3676777789999887766554 44 333322 2345568899999999884
No 105
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=23.81 E-value=4.1e+02 Score=25.61 Aligned_cols=105 Identities=19% Similarity=0.264 Sum_probs=67.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCC--CeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHhCC--eEcccc
Q 016953 259 DPRELEKIRQREADMTKERIEKLLKAG--ANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGA--TMVSTF 334 (380)
Q Consensus 259 ~~~~l~~~~~~E~~~l~~~v~~i~~~g--v~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa--~ii~s~ 334 (380)
+++++++|. ..+++++++.+++.+ .+++...++..+. +.++.+.++-++..-...+++...+..|. .+...+
T Consensus 214 sp~~f~ef~---~P~~k~i~~~i~~~~~~~~ilh~cg~~~~~-~~~~~~~~~~~is~d~~~dl~~~k~~~g~~~~i~Gni 289 (346)
T PRK00115 214 SPADYREFV---LPYMKRIVAELKREHPDVPVILFGKGAGEL-LEAMAETGADVVGLDWTVDLAEARRRVGDKKALQGNL 289 (346)
T ss_pred CHHHHHHHH---HHHHHHHHHHHHHhCCCCCEEEEcCCcHHH-HHHHHhcCCCEEeeCCCCCHHHHHHHcCCCeEEEeCC
Confidence 356666665 477888899998874 5676666666554 56678888888765555778888889895 556555
Q ss_pred ccccCCcCCCCCCcccceeEEE------EEEcCeeEEEEEcCCCCCe
Q 016953 335 ADMEGEETFDSSLLGSADEVVE------ERVADDDVIMIKGTKTTSA 375 (380)
Q Consensus 335 ~~l~~~~~~~~~~lG~~~~v~~------~~ig~~~~~~f~g~~~~~~ 375 (380)
+. .-.+|+-+.+.. ...++..|++=.||.-+..
T Consensus 290 ~p--------~ll~gt~e~i~~~~~~~i~~~~~~gfIl~~Gc~i~~~ 328 (346)
T PRK00115 290 DP--------AVLLAPPEAIEEEVRAILDGGGGPGHIFNLGHGILPE 328 (346)
T ss_pred Ch--------hHhcCCHHHHHHHHHHHHHHhCCCCeeeecCCcCCCC
Confidence 32 112344433332 1124566888888876543
No 106
>PLN02433 uroporphyrinogen decarboxylase
Probab=23.70 E-value=3.7e+02 Score=25.95 Aligned_cols=105 Identities=14% Similarity=0.238 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHhCC--eEcccc
Q 016953 259 DPRELEKIRQREADMTKERIEKLLKA--GANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGA--TMVSTF 334 (380)
Q Consensus 259 ~~~~l~~~~~~E~~~l~~~v~~i~~~--gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa--~ii~s~ 334 (380)
+++++++|. +.+++++++.+++. +..+++...+-. ..+.++.+.|+-++.-=...+|+...+.+|. .+...+
T Consensus 207 sp~~f~ef~---~P~~k~i~~~i~~~~~~~~~ilh~cG~~-~~~~~~~~~~~~~i~~d~~~dl~e~~~~~g~~~~l~GNi 282 (345)
T PLN02433 207 SPVDFEEFS---KPYLEKIVDEVKARHPDVPLILYANGSG-GLLERLAGTGVDVIGLDWTVDMADARRRLGSDVAVQGNV 282 (345)
T ss_pred CHHHHHHHH---HHHHHHHHHHHHHhCCCCCEEEEeCCCH-HHHHHHHhcCCCEEEcCCCCCHHHHHHHhCCCeEEEeCC
Confidence 456666654 57888889999875 444555433433 5678888888877764344677777888885 445444
Q ss_pred ccccCCcCCCCCCcccceeEEE------EEEcCeeEEEEEcCCCCCe
Q 016953 335 ADMEGEETFDSSLLGSADEVVE------ERVADDDVIMIKGTKTTSA 375 (380)
Q Consensus 335 ~~l~~~~~~~~~~lG~~~~v~~------~~ig~~~~~~f~g~~~~~~ 375 (380)
+. .-..|+-+.++. ...++..|++=.||.-+..
T Consensus 283 ~p--------~ll~gt~e~i~~~v~~~i~~~~~~g~Il~~Gc~i~~~ 321 (345)
T PLN02433 283 DP--------AVLFGSKEAIEKEVRDVVKKAGPQGHILNLGHGVLVG 321 (345)
T ss_pred Cc--------hhhCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCC
Confidence 32 112455443332 1234445888888876543
No 107
>PRK10824 glutaredoxin-4; Provisional
Probab=23.67 E-value=2.4e+02 Score=22.75 Aligned_cols=73 Identities=16% Similarity=0.232 Sum_probs=46.4
Q ss_pred HHHHHHHHHhCCCeEEEeCC-------CCCHHHHHHHHHcCce--EEeeC-ChhHHHHHHHHhCCeEccccccccCCcCC
Q 016953 274 TKERIEKLLKAGANVILTTK-------GIDDMALKYFVEAGAI--AVRRV-RKEDMRHIAKATGATMVSTFADMEGEETF 343 (380)
Q Consensus 274 l~~~v~~i~~~gv~lVi~~~-------~I~~~al~~l~~~~I~--vv~~v-~~~~l~~la~~tGa~ii~s~~~l~~~~~~ 343 (380)
..+.++++++.++=+|++.+ +.+..|.++|...|+- .+.-. +.+.-+.+...||.+-++.+- +
T Consensus 4 ~~~~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIF-------I 76 (115)
T PRK10824 4 TIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLW-------V 76 (115)
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCCCCCCeEE-------E
Confidence 45667888887765555443 2678899999999854 33332 334556777888887666553 3
Q ss_pred CCCCccccee
Q 016953 344 DSSLLGSADE 353 (380)
Q Consensus 344 ~~~~lG~~~~ 353 (380)
+...+|=|+.
T Consensus 77 ~G~~IGG~dd 86 (115)
T PRK10824 77 DGELVGGCDI 86 (115)
T ss_pred CCEEEcChHH
Confidence 4455665543
No 108
>PF08708 PriCT_1: Primase C terminal 1 (PriCT-1); InterPro: IPR014820 This alpha helical domain is found at the C-terminal of primases.
Probab=23.37 E-value=2.8e+02 Score=19.71 Aligned_cols=52 Identities=13% Similarity=0.214 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccccCHHHHHHHHHHhh
Q 016953 102 ELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSM 159 (380)
Q Consensus 102 ~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~~~~~l~~va~t~l 159 (380)
.|.+.+-.+..+|+++.. .+...+...+..+++...-|+ +.+.+..+++++.
T Consensus 15 ~lf~~a~~~~~~~v~~~~---~~~~~v~~~~~~~N~~~~~PL---~~~Ev~~i~kSi~ 66 (71)
T PF08708_consen 15 TLFRLARRLAYRGVDQEE---QFRQEVLSLAQAINSNFSPPL---PESEVKAIAKSIA 66 (71)
T ss_pred HHHHHHHHHHHhCCCHhH---HHHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHH
Confidence 455566666777888888 444444444444444333344 5778888888764
No 109
>TIGR03859 PQQ_PqqD coenzyme PQQ biosynthesis protein PqqD. This model identifies PqqD, a protein involved in the final steps of the biosynthesis of pyrroloquinoline quinone, coenzyme PQQ.
Probab=23.28 E-value=2.4e+02 Score=20.94 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=36.7
Q ss_pred CCCcccceeecCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhh
Q 016953 40 GPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQD 86 (380)
Q Consensus 40 GP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~ 86 (380)
=+-+...++.++.|-+.+..-|+.|.+.++-.+-+..+...++...+
T Consensus 12 ~~v~~~~Vl~~p~~~~~Ln~~g~~Iw~lldg~~tv~eI~~~L~~~Y~ 58 (81)
T TIGR03859 12 ERAQDCYVLLYPEGMVKLNDSAGEILELCDGKRSLAEIIQELAQRFP 58 (81)
T ss_pred ccccCcEEEEcCCceeeeChHHHHHHHHccCCCcHHHHHHHHHHHcC
Confidence 34456677777777788999999999999988888777777766554
No 110
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=22.39 E-value=4.1e+02 Score=25.28 Aligned_cols=72 Identities=14% Similarity=0.250 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHhCC--eEccccc
Q 016953 259 DPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGA--TMVSTFA 335 (380)
Q Consensus 259 ~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa--~ii~s~~ 335 (380)
++++++++. ..+++++++.+++ ++.++...++. ...+..+.+.|+-++.--...+++...+..|. .++..++
T Consensus 201 sp~~f~e~~---~p~~k~i~~~i~~-~~~ilh~cG~~-~~~l~~~~~~g~d~~~~d~~~dl~e~~~~~g~~~~i~Gnid 274 (326)
T cd03307 201 SPEFYEEFA---LPYHKKIVKELHG-CPTILHICGNT-TPILEYIAQCGFDGISVDEKVDVKTAKEIVGGRAALIGNVS 274 (326)
T ss_pred CHHHHHHHH---HHHHHHHHHHHhc-CCcEEEECCCC-hhHHHHHHHcCCCeecccccCCHHHHHHHcCCceEEEeCCC
Confidence 456666654 4778888888887 55565546665 44577788888877754445578888888884 5555543
No 111
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=21.95 E-value=1.4e+02 Score=28.11 Aligned_cols=58 Identities=21% Similarity=0.259 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhCCCeEEEeCCCCCHHHH-HHHH---HcC--------ceEEeeCChhHHHHHHHHhCCeEcccc
Q 016953 271 ADMTKERIEKLLKAGANVILTTKGIDDMAL-KYFV---EAG--------AIAVRRVRKEDMRHIAKATGATMVSTF 334 (380)
Q Consensus 271 ~~~l~~~v~~i~~~gv~lVi~~~~I~~~al-~~l~---~~~--------I~vv~~v~~~~l~~la~~tGa~ii~s~ 334 (380)
.++++++++ .|++.+++|-..|.... +|+. +.| |+-+ .+...+.++++.+|+.+=..+
T Consensus 151 ~~~L~~Ki~----aGA~f~iTQ~~Fd~~~~~~f~~~~~~~gi~~PIi~GI~pi--~s~~~~~~~~~~~Gi~vP~~l 220 (281)
T TIGR00677 151 LKYLKEKVD----AGADFIITQLFYDVDNFLKFVNDCRAIGIDCPIVPGIMPI--NNYASFLRRAKWSKTKIPQEI 220 (281)
T ss_pred HHHHHHHHH----cCCCEeeccceecHHHHHHHHHHHHHcCCCCCEEeecccc--CCHHHHHHHHhcCCCCCCHHH
Confidence 445555554 79999999999997664 3333 333 2222 355578888889998875444
No 112
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=21.79 E-value=2.4e+02 Score=22.43 Aligned_cols=40 Identities=15% Similarity=0.155 Sum_probs=24.8
Q ss_pred HHHHHHHHHhCCCeE-EEeCCCCCHHHHHHHHHcCceEEee
Q 016953 274 TKERIEKLLKAGANV-ILTTKGIDDMALKYFVEAGAIAVRR 313 (380)
Q Consensus 274 l~~~v~~i~~~gv~l-Vi~~~~I~~~al~~l~~~~I~vv~~ 313 (380)
..+.++.+.+.|++- ++..+..++.+.+++.++|+-++..
T Consensus 68 ~~~~v~~~~~~g~~~v~~~~g~~~~~~~~~a~~~gi~vigp 108 (116)
T PF13380_consen 68 VPEIVDEAAALGVKAVWLQPGAESEELIEAAREAGIRVIGP 108 (116)
T ss_dssp HHHHHHHHHHHT-SEEEE-TTS--HHHHHHHHHTT-EEEES
T ss_pred HHHHHHHHHHcCCCEEEEEcchHHHHHHHHHHHcCCEEEeC
Confidence 455667777778865 4555666788888888888887743
No 113
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=21.09 E-value=3.2e+02 Score=25.29 Aligned_cols=64 Identities=20% Similarity=0.217 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChh---HHHHHHHHhCCeEcc
Q 016953 268 QREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKE---DMRHIAKATGATMVS 332 (380)
Q Consensus 268 ~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~---~l~~la~~tGa~ii~ 332 (380)
++|++++...++.+.+. .++.++-...++.+.....+.|.-.+..++.. ++-.++.-.|+.++-
T Consensus 57 ~~E~~rl~~~v~~~~~~-~~~plsiDT~~~~vi~~al~~G~~iINsis~~~~~~~~~l~~~~~~~vV~ 123 (257)
T TIGR01496 57 EEELNRVVPVIKALRDQ-PDVPISVDTYRAEVARAALEAGADIINDVSGGQDPAMLEVAAEYGVPLVL 123 (257)
T ss_pred HHHHHHHHHHHHHHHhc-CCCeEEEeCCCHHHHHHHHHcCCCEEEECCCCCCchhHHHHHHcCCcEEE
Confidence 35677889999988764 24556777788888888888898888876554 366777778888765
No 114
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=20.49 E-value=2.4e+02 Score=25.39 Aligned_cols=52 Identities=19% Similarity=0.213 Sum_probs=33.2
Q ss_pred HHHHHhCCCeEEEeCCCCCH-HHHHHHHH-cCceEEeeC-------ChhHHHHHHHHhCCe
Q 016953 278 IEKLLKAGANVILTTKGIDD-MALKYFVE-AGAIAVRRV-------RKEDMRHIAKATGAT 329 (380)
Q Consensus 278 v~~i~~~gv~lVi~~~~I~~-~al~~l~~-~~I~vv~~v-------~~~~l~~la~~tGa~ 329 (380)
+|+|.+.+|||||....... ...+.|.+ .||.++..- -.+.++.+++++|-.
T Consensus 67 ~E~i~~l~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~~~~~~~~~~~i~~lg~~~g~~ 127 (262)
T cd01147 67 YEKIAALKPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDGGDSLEDTPEQIRLLGKVLGKE 127 (262)
T ss_pred HHHHHhcCCCEEEEecCCccchhHHHHHHhhCCCEEEEecCCchHhHHHHHHHHHHHhCCH
Confidence 57888999999998766544 23344544 776655332 123477788888753
No 115
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=20.47 E-value=1e+02 Score=19.96 Aligned_cols=32 Identities=9% Similarity=0.303 Sum_probs=19.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHHH
Q 016953 104 LKRANDLVRNKIHPTSIISGYRLAMREACKYV 135 (380)
Q Consensus 104 l~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l 135 (380)
++++.+|...|.+...|.+-+..+..-...++
T Consensus 11 ~~~i~~l~~~G~si~~IA~~~gvsr~TvyR~l 42 (45)
T PF02796_consen 11 IEEIKELYAEGMSIAEIAKQFGVSRSTVYRYL 42 (45)
T ss_dssp HHHHHHHHHTT--HHHHHHHTTS-HHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHCcCHHHHHHHH
Confidence 46777888888888888776665555444444
No 116
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=20.40 E-value=4.1e+02 Score=24.58 Aligned_cols=64 Identities=22% Similarity=0.260 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCCh----hHHHHHHHHhCCeEcc
Q 016953 268 QREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRK----EDMRHIAKATGATMVS 332 (380)
Q Consensus 268 ~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~----~~l~~la~~tGa~ii~ 332 (380)
++|++++.+.++.|.+. .++.++=...++.+.+...+.|.-.+-.++. +.+-.++.-.|+.++-
T Consensus 58 ~~E~~rl~~~v~~i~~~-~~~plSIDT~~~~v~e~al~~G~~iINdisg~~~~~~~~~l~~~~~~~vV~ 125 (257)
T cd00739 58 EEELERVIPVLEALRGE-LDVLISVDTFRAEVARAALEAGADIINDVSGGSDDPAMLEVAAEYGAPLVL 125 (257)
T ss_pred HHHHHHHHHHHHHHHhc-CCCcEEEeCCCHHHHHHHHHhCCCEEEeCCCCCCChHHHHHHHHcCCCEEE
Confidence 45777888889988764 2566777788888888888889777776543 4566667777888775
No 117
>PF04471 Mrr_cat: Restriction endonuclease; InterPro: IPR007560 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. This entry represents Mrr, a type IV restriction endonuclease involved in the acceptance of modified foreign DNA, restricting both adenine- and cytosine-methylated DNA. Plasmids carrying HincII, HpaI, and TaqI R and M genes are severely restricted in Escherichia coli strains that are Mrr+ []. Mrr appears to be the final effector of the bacterial SOS response, which is not only a vital reply to DNA damage but also constitutes an essential mechanism for the generation of genetic variability that in turn fuels adaptation and resistance development in bacterial populations []. Mrr possesses a cleavage domain that is similar to that found in type II restriction enzymes, however it has an unusual glutamine residue at the central position of the (D/E)-(D/E)XK hallmark of the active site [].; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0009307 DNA restriction-modification system; PDB: 1Y88_A.
Probab=20.34 E-value=1.6e+02 Score=22.65 Aligned_cols=37 Identities=19% Similarity=0.239 Sum_probs=19.7
Q ss_pred HHHHHHHHhC--CCeEEEeCCCCCHHHHHHHHH-cCceEE
Q 016953 275 KERIEKLLKA--GANVILTTKGIDDMALKYFVE-AGAIAV 311 (380)
Q Consensus 275 ~~~v~~i~~~--gv~lVi~~~~I~~~al~~l~~-~~I~vv 311 (380)
.+++...... ..-++++..++++.|.++..+ ++|.++
T Consensus 67 ~~~~~~~~~~~~~~~iivt~~~~t~~a~~~~~~~~~I~l~ 106 (115)
T PF04471_consen 67 RQLIGKAKKYGADKGIIVTSSGFTPEAKEFAEKFKNIELI 106 (115)
T ss_dssp HHHHHHHGGGT-SEEEEE-SSEE-HHHHHHHH--------
T ss_pred HHHhhhhhccCCCEEEEEECCcCCHHHHHHHHhhcccccc
Confidence 3334444433 446888999999999999988 775444
Done!