Query 016953
Match_columns 380
No_of_seqs 134 out of 1505
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 06:31:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016953.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016953hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iyg_A T-complex protein 1 sub 100.0 5E-83 1.7E-87 648.5 43.0 370 11-380 2-371 (529)
2 3iyg_G T-complex protein 1 sub 100.0 4.4E-81 1.5E-85 632.3 41.6 361 12-380 2-364 (515)
3 1q3q_A Thermosome alpha subuni 100.0 1.4E-80 4.8E-85 632.4 41.7 361 12-380 16-376 (548)
4 3ko1_A Chaperonin; 9-fold symm 100.0 6.4E-81 2.2E-85 634.5 37.9 360 13-380 24-383 (553)
5 1a6d_B Thermosome (beta subuni 100.0 7.7E-81 2.6E-85 634.2 37.0 361 12-380 14-374 (543)
6 3ruv_A Chaperonin, CPN; double 100.0 3.7E-80 1.3E-84 628.8 40.4 357 13-380 13-369 (543)
7 3p9d_D T-complex protein 1 sub 100.0 9E-81 3.1E-85 631.3 34.6 370 1-380 1-379 (528)
8 3p9d_A T-complex protein 1 sub 100.0 7.9E-81 2.7E-85 635.1 34.3 372 8-380 13-387 (559)
9 3iyg_H T-complex protein 1 sub 100.0 8.4E-80 2.9E-84 622.5 40.8 355 12-380 4-365 (515)
10 1a6d_A Thermosome (alpha subun 100.0 4.7E-80 1.6E-84 628.2 38.9 359 12-380 15-373 (545)
11 3iyg_B T-complex protein 1 sub 100.0 7.3E-79 2.5E-83 615.9 41.9 354 12-380 3-362 (513)
12 3iyg_D T-complex protein 1 sub 100.0 6.6E-79 2.3E-83 616.8 41.2 360 11-380 3-369 (518)
13 3iyg_E T-complex protein 1 sub 100.0 1.1E-78 3.9E-83 615.1 41.6 359 12-380 3-365 (515)
14 3iyg_Z T-complex protein 1 sub 100.0 1.5E-78 5.1E-83 613.6 38.4 355 13-380 4-368 (517)
15 3p9d_G T-complex protein 1 sub 100.0 8.8E-79 3E-83 619.0 29.2 355 13-380 18-378 (550)
16 3p9d_H T-complex protein 1 sub 100.0 6E-78 2.1E-82 614.9 34.7 358 13-380 19-386 (568)
17 3p9d_E T-complex protein 1 sub 100.0 8.7E-78 3E-82 613.0 34.5 358 13-380 39-408 (562)
18 3p9d_F T-complex protein 1 sub 100.0 2.9E-78 1E-82 615.7 27.7 360 11-380 9-380 (546)
19 3p9d_C T-complex protein 1 sub 100.0 5.9E-78 2E-82 614.4 29.3 357 12-375 12-376 (590)
20 3iyg_Q T-complex protein 1 sub 100.0 1E-75 3.5E-80 593.1 41.3 354 13-380 4-361 (512)
21 3p9d_B T-complex protein 1 sub 100.0 2.3E-76 7.8E-81 599.9 26.0 356 10-380 8-369 (527)
22 3aq1_B Thermosome subunit; gro 100.0 5.4E-71 1.8E-75 556.7 25.7 326 47-380 1-327 (500)
23 1kp8_A Groel protein; chaperon 100.0 8E-62 2.7E-66 492.2 33.9 313 12-373 3-338 (547)
24 1we3_A CPN60(groel); chaperoni 100.0 2.5E-61 8.7E-66 489.1 33.3 312 12-373 3-337 (543)
25 1iok_A Chaperonin 60; chaperon 100.0 6E-62 2E-66 493.4 26.0 313 12-373 4-339 (545)
26 3rtk_A 60 kDa chaperonin 2; he 100.0 4E-61 1.4E-65 486.0 22.8 314 12-374 3-338 (546)
27 1gml_A T-complex protein 1 sub 100.0 3.9E-41 1.3E-45 294.5 17.6 167 208-380 1-168 (178)
28 1ass_A Thermosome; chaperonin, 100.0 2E-37 6.9E-42 265.7 13.2 155 214-374 1-155 (159)
29 1srv_A Protein (groel (HSP60 c 99.2 4.5E-11 1.6E-15 98.0 10.4 126 216-369 1-144 (145)
30 3m6c_A 60 kDa chaperonin 1; ch 99.2 4.9E-11 1.7E-15 102.4 10.7 134 211-372 2-153 (194)
31 3osx_A 60 kDa chaperonin; alph 99.2 2.5E-10 8.4E-15 98.3 12.9 130 215-372 13-160 (201)
32 1o13_A Probable NIFB protein; 82.1 3.5 0.00012 33.2 6.8 55 276-331 67-121 (136)
33 2yx6_A Hypothetical protein PH 80.3 4.5 0.00015 31.5 6.7 54 276-330 54-107 (121)
34 1eo1_A Hypothetical protein MT 78.2 5.5 0.00019 31.2 6.6 53 277-330 57-109 (124)
35 2wfb_A Putative uncharacterize 76.9 5.2 0.00018 31.1 6.1 53 277-330 59-112 (120)
36 1rdu_A Conserved hypothetical 69.5 5.5 0.00019 30.7 4.5 51 278-329 55-105 (116)
37 2re2_A Uncharacterized protein 68.6 10 0.00035 30.3 6.1 52 276-329 70-121 (136)
38 2qtd_A Uncharacterized protein 59.5 22 0.00074 26.7 6.1 50 279-330 50-99 (105)
39 2xzm_U Ribosomal protein L7AE 46.6 52 0.0018 25.8 6.5 50 276-328 31-85 (126)
40 3psh_A Protein HI_1472; substr 46.3 36 0.0012 30.9 6.5 52 278-329 77-154 (326)
41 3v7q_A Probable ribosomal prot 46.1 61 0.0021 24.1 6.7 51 276-329 26-80 (101)
42 3v7e_A Ribosome-associated pro 45.2 61 0.0021 23.2 6.3 51 275-328 17-71 (82)
43 3on1_A BH2414 protein; structu 44.0 62 0.0021 24.1 6.4 52 275-329 24-79 (101)
44 2lbw_A H/ACA ribonucleoprotein 44.0 56 0.0019 25.3 6.3 49 276-327 27-80 (121)
45 2r79_A Periplasmic binding pro 43.0 59 0.002 28.8 7.3 52 278-329 52-111 (283)
46 2r7a_A Bacterial heme binding 41.1 56 0.0019 28.3 6.7 52 278-329 52-112 (256)
47 2wi8_A Iron-uptake system-bind 40.9 46 0.0016 30.0 6.2 52 278-329 89-144 (311)
48 4a18_G RPL30; ribosome, eukary 39.3 97 0.0033 23.1 6.9 52 275-329 28-84 (104)
49 2ale_A SNU13, NHP2/L7AE family 39.1 45 0.0015 26.5 5.1 50 276-328 39-93 (134)
50 3md9_A Hemin-binding periplasm 37.4 66 0.0022 27.8 6.5 52 278-329 52-111 (255)
51 1r3s_A URO-D, uroporphyrinogen 35.3 49 0.0017 30.9 5.6 104 259-374 225-343 (367)
52 3iz5_f 60S ribosomal protein L 34.5 1E+02 0.0036 23.5 6.4 49 275-323 32-85 (112)
53 2q8p_A Iron-regulated surface 34.5 41 0.0014 29.3 4.7 52 278-329 53-110 (260)
54 1n2z_A Vitamin B12 transport p 34.4 55 0.0019 28.2 5.5 51 278-328 50-107 (245)
55 2aif_A Ribosomal protein L7A; 33.8 78 0.0027 25.0 5.7 51 276-329 48-103 (135)
56 2etv_A Iron(III) ABC transport 33.6 51 0.0018 30.3 5.4 52 278-329 89-151 (346)
57 1p90_A NAFY protein, hypotheti 32.0 67 0.0023 25.8 5.1 30 284-314 66-95 (145)
58 2inf_A URO-D, UPD, uroporphyri 31.5 82 0.0028 29.2 6.4 65 260-329 222-286 (359)
59 3u5e_c L32, RP73, YL38, 60S ri 30.7 1.5E+02 0.005 22.2 6.6 52 275-329 28-84 (105)
60 1xbi_A 50S ribosomal protein L 30.0 88 0.003 24.1 5.4 49 276-324 36-89 (120)
61 4hb7_A Dihydropteroate synthas 29.5 1.1E+02 0.0039 27.3 6.6 63 268-332 64-130 (270)
62 2pw9_A Putative formate dehydr 29.5 54 0.0018 29.4 4.5 41 276-316 206-246 (268)
63 2fc3_A 50S ribosomal protein L 27.6 1.2E+02 0.004 23.5 5.7 48 276-323 35-87 (124)
64 4hn9_A Iron complex transport 27.6 85 0.0029 28.6 5.7 51 278-329 109-165 (335)
65 2eja_A URO-D, UPD, uroporphyri 26.8 1.2E+02 0.004 27.7 6.6 73 259-335 207-280 (338)
66 1vq8_F 50S ribosomal protein L 26.5 1.1E+02 0.0038 23.5 5.4 51 276-329 36-91 (120)
67 3o85_A Ribosomal protein L7AE; 25.6 1.2E+02 0.0041 23.5 5.4 52 275-329 37-93 (122)
68 3cyv_A URO-D, UPD, uroporphyri 25.2 62 0.0021 29.9 4.3 66 260-329 216-285 (354)
69 3ff4_A Uncharacterized protein 25.0 86 0.0029 24.3 4.5 39 274-312 71-110 (122)
70 1rlg_A 50S ribosomal protein L 24.2 1E+02 0.0035 23.6 4.8 51 276-329 34-89 (119)
71 3cpq_A 50S ribosomal protein L 23.9 2.2E+02 0.0077 21.3 6.6 52 275-329 27-83 (110)
72 3gx8_A Monothiol glutaredoxin- 23.4 2.1E+02 0.0073 21.7 6.6 60 274-334 5-78 (121)
73 4exq_A UPD, URO-D, uroporphyri 23.4 48 0.0016 31.1 3.2 103 260-374 226-341 (368)
74 2gjl_A Hypothetical protein PA 23.4 1.8E+02 0.0063 26.3 7.2 58 275-332 86-143 (328)
75 3bo9_A Putative nitroalkan dio 23.1 1.9E+02 0.0066 26.3 7.3 57 275-331 92-148 (326)
76 3gfv_A Uncharacterized ABC tra 22.7 1E+02 0.0035 27.4 5.2 51 278-329 88-146 (303)
77 2zkr_f 60S ribosomal protein L 22.4 1.7E+02 0.006 26.0 6.4 54 276-329 142-200 (266)
78 1pq4_A Periplasmic binding pro 22.0 1.6E+02 0.0055 26.3 6.4 32 273-304 225-256 (291)
79 2vef_A Dihydropteroate synthas 20.7 2.2E+02 0.0076 25.9 7.0 64 268-332 67-134 (314)
80 3pry_A Heat shock protein HSP 20.6 41 0.0014 30.2 1.9 42 275-316 215-256 (268)
81 2chu_A CEUE, enterochelin upta 20.1 1.7E+02 0.0057 25.9 6.0 51 278-329 88-146 (296)
No 1
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=5e-83 Score=648.47 Aligned_cols=370 Identities=67% Similarity=1.039 Sum_probs=353.4
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhcC
Q 016953 11 LGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVG 90 (380)
Q Consensus 11 ~~~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~G 90 (380)
..++.+|.+++.+|+.||..+++++|+||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++||+++|
T Consensus 2 ~~~~~~g~~a~~~ni~a~~~la~~v~ttlGP~G~~kml~~~~g~~~iTnDG~tIlk~i~v~hP~akll~~~a~~qd~e~G 81 (529)
T 3iyg_A 2 FGDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVG 81 (529)
T ss_pred CcchhchHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHcccCChHHHHHHHHHHHhhhhhC
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccccCHHHHHHHHHHhhccCcCCCchHH
Q 016953 91 DGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDF 170 (380)
Q Consensus 91 DGttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~~~~~l~~va~t~l~sK~~~~~~~~ 170 (380)
|||||++|||++||+++.+++.+|+||+.|++||+.|++.++++|++.++++++..+++.|.++|+|+++||++++|+++
T Consensus 82 DGTTtvvvLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~~s~~v~~~~~e~l~~va~tsl~sK~~~~~~~~ 161 (529)
T 3iyg_A 82 DGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIINTDELGRDCLINAAKTSMSSKVIGINGDF 161 (529)
T ss_pred CChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHhccCcccccHHH
Confidence 99999999999999999999999999999999999999999999998238898866789999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeEeeEEEcccccCCCCCccccCceEEEEEecccccccc
Q 016953 171 FANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQ 250 (380)
Q Consensus 171 ls~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~~kIll~~~~L~~~~~~ 250 (380)
|++|+++|+.++.+..++|...||+++|+|.++.|+++.||++++|++|++++.|++||++++||||++++|+|++++++
T Consensus 162 i~~livdAv~~V~~~~~~g~~~~dv~~I~I~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIlll~~~le~~k~e 241 (529)
T 3iyg_A 162 FANLVVDAVLAIKYTDIRGQPRYPVNSINVLKAHGRSQMESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMK 241 (529)
T ss_pred HHHHHHHHHHHHhhhccCCCcccccceEEEEEecCCCccceEEEeeeEEecCcccccCCcccCCceEEEecCCccccccc
Confidence 99999999999964334454568888999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHhCCeE
Q 016953 251 LGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATM 330 (380)
Q Consensus 251 ~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa~i 330 (380)
.++++.++++++++.+.++|++++++++++|++.|++|||++++|++.|++||.++||++++++++++|+|||++|||++
T Consensus 242 ~~~~v~i~~~~~~~~i~~~E~~~l~~~v~kI~~~g~nvvi~~~~I~d~al~~L~~~gI~av~~v~k~~leria~~tGa~i 321 (529)
T 3iyg_A 242 LGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKASGATV 321 (529)
T ss_pred CCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCceeccCCHHHHHHHHHHhCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCcCCCCCCcccceeEEEEEEcCeeEEEEEcCCCCCeeEEeC
Q 016953 331 VSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAVCGLI 380 (380)
Q Consensus 331 i~s~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g~~~~~~~t~l~ 380 (380)
++++++++..+++++.++|+|+.|+++++|+++|++|+||+++++|||+|
T Consensus 322 v~~~~~l~~~e~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~~~~TI~l 371 (529)
T 3iyg_A 322 LSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTKARTSASVIL 371 (529)
T ss_pred ecchhcccchhccChhhCccceEEEEEEeCCceEEEEEcCCCCceEEEEE
Confidence 99999886555677889999999999999999999999999999999986
No 2
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=4.4e-81 Score=632.33 Aligned_cols=361 Identities=32% Similarity=0.520 Sum_probs=343.6
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhcCC
Q 016953 12 GERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGD 91 (380)
Q Consensus 12 ~~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GD 91 (380)
.++.+|.+++.+|+.||..+++++|+||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++||+++||
T Consensus 2 ~~~~~g~~~~~~ni~a~~~la~~vkttLGP~G~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~GD 81 (515)
T 3iyg_G 2 TKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGD 81 (515)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHhcCcCCCCCeEEEECCCCCeEEECCHHHHHHhcccCCHHHHHHHHHHHHhhhhhCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccccCHHHHHHHHHHhhccCcCCCchHHH
Q 016953 92 GTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFF 171 (380)
Q Consensus 92 Gttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~~~~~l~~va~t~l~sK~~~~~~~~l 171 (380)
||||++|||++||+++.+++.+|+||+.|++||+.|++.++++|+++ +++++..+++.|.++|+|+++||.++.|.+++
T Consensus 82 GTTtvvvLAgeLL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~-s~~v~~~~~~~l~~va~tsl~sK~i~~~~~~~ 160 (515)
T 3iyg_G 82 GTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKI-SIPVDTSNRDTMLNIINSSITTKVISRWSSLA 160 (515)
T ss_pred ChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHh-hcccCCCCHHHHHHHHHHHhcCCchhhHHHHH
Confidence 99999999999999999999999999999999999999999999997 89988767899999999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCccccCC-ceeEEecCCCCcccceeEeeEEEcccccCCCCCccccCceEEEEEecccccccc
Q 016953 172 ANLVVEAVQAVKMTNQRGEVKYPIK-GINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQ 250 (380)
Q Consensus 172 s~lv~~av~~~~~~~~~g~~~~~~~-~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~~kIll~~~~L~~~~~~ 250 (380)
++++++|+..+.+. .++...+|++ +|+|++++|+++.||++++|++|++++.|++||++++||||++++|||++++++
T Consensus 161 ~~i~vdav~~V~~~-~~~~~~~dl~~~I~I~ki~Ggs~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~~~~Le~~k~e 239 (515)
T 3iyg_G 161 CNIALDAVKTVQFE-ENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGE 239 (515)
T ss_pred HHHHHHHHHhcccc-cCCCcccchhheeEEEEecCCCcccceEEeeEEEeCCCCCCCCcceeeeeEEEEEcccccccccc
Confidence 99999999988532 2233345665 499999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHhCCeE
Q 016953 251 LGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATM 330 (380)
Q Consensus 251 ~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa~i 330 (380)
.++++.+++++++..+.++|++++++++++|++.|++|||++++|++.+++||.++||++++++++++|+|||++|||++
T Consensus 240 ~~~~v~is~~~~l~~~l~~E~~~l~~~v~kI~~~g~~vIi~~~~I~~~al~~L~~~~I~av~~~~k~~leria~~tGa~i 319 (515)
T 3iyg_G 240 SQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARACGARI 319 (515)
T ss_pred cCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEECCccCHHHHHHHHHCCceeeccCCHHHHHHHHHHhCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCcCCCCCCccc-ceeEEEEEEcCeeEEEEEcCCCCCeeEEeC
Q 016953 331 VSTFADMEGEETFDSSLLGS-ADEVVEERVADDDVIMIKGTKTTSAVCGLI 380 (380)
Q Consensus 331 i~s~~~l~~~~~~~~~~lG~-~~~v~~~~ig~~~~~~f~g~~~~~~~t~l~ 380 (380)
+++++++ +++++|+ |+.|+++++|+++|++|+||+++++|||+|
T Consensus 320 i~~l~~l------~~~~LG~~a~~v~~~~~g~~~~~~i~g~~~~~~~TIll 364 (515)
T 3iyg_G 320 VSRPEEL------REEDVGTGAGLLEIKKIGDEYFTFITECKDPKACTILL 364 (515)
T ss_pred ecccccc------ChhhcCCcccEEEEEEECCceEEEEeCCCCCCeEEEEE
Confidence 9998764 6678999 999999999999999999999999999986
No 3
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A
Probab=100.00 E-value=1.4e-80 Score=632.43 Aligned_cols=361 Identities=38% Similarity=0.623 Sum_probs=346.2
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhcCC
Q 016953 12 GERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGD 91 (380)
Q Consensus 12 ~~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GD 91 (380)
.++.+|.+++.+|+.||..+++++|+||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++||+++||
T Consensus 16 ~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~GD 95 (548)
T 1q3q_A 16 TQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDCATILDKIDLQHPAAKMMVEVAKTQDKEAGD 95 (548)
T ss_dssp CEEEEHHHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECTTCCEEEESCHHHHHHHSCCCSHHHHHHHHHHHHHHHHTSS
T ss_pred cceechHHHHHHHHHHHHHHHHHHHhccCCCCceEEEEcCCCCeEEECCHHHHHHHhhccchHHHHHHHHHHhcCCEECC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccccCHHHHHHHHHHhhccCcCCCchHHH
Q 016953 92 GTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFF 171 (380)
Q Consensus 92 Gttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~~~~~l~~va~t~l~sK~~~~~~~~l 171 (380)
||||++|||++||+++.+++.+|+||+.|++||+.|++.++++|+++ +++++..|++.|.++|+|+++||+.++|+++|
T Consensus 96 GTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~-s~~v~~~d~~~l~~va~tsl~sKi~~~~~~~i 174 (548)
T 1q3q_A 96 GTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEILDEI-AIRVDPDDEETLLKIAATSITGKNAESHKELL 174 (548)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH-CEECCTTCHHHHHHHHHHHSCSSTTGGGHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCCHHHHHHHHHHHhhccccccchHHH
Confidence 99999999999999999999999999999999999999999999997 99987667899999999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeEeeEEEcccccCCCCCccccCceEEEEEeccccccccc
Q 016953 172 ANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQL 251 (380)
Q Consensus 172 s~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~~kIll~~~~L~~~~~~~ 251 (380)
++|+++|+.++.+.. .|...+|++.|+|.++.|++++||++++|++|++++.|++||++++||||++++++|++++++.
T Consensus 175 ~~livdAv~~V~~~~-~g~~~~d~~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~~~~Le~~k~e~ 253 (548)
T 1q3q_A 175 AKLAVEAVKQVAEKK-DGKYVVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTET 253 (548)
T ss_dssp HHHHHHHHHHHCEES-SSSEECCGGGEEEEEEEBSCGGGCEEESSEEESCCCSSTTSCSEESSEEEEEECSCBSCCCCSS
T ss_pred HHHHHHHHHHhcccc-CCCccccCCeEEEEEecCCCccceEEEeeEEEeccCCCCCCcceecCCEEEEEecCcCcccccC
Confidence 999999999996421 1334578889999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHhCCeEc
Q 016953 252 GVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMV 331 (380)
Q Consensus 252 ~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa~ii 331 (380)
++++.++++++++.+.++|++++++++++|++.|++|||++++|++.|++||.++||++++++++++|+|||++|||+++
T Consensus 254 ~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~~~k~~le~ia~~tGa~ii 333 (548)
T 1q3q_A 254 DAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIV 333 (548)
T ss_dssp CCCEEECSHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHCCCCB
T ss_pred CceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCcCEEEEcCCcCHHHHHHHHHCCcEEEccCCHHHHHHHHHHhCCeEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCcCCCCCCcccceeEEEEEEcCeeEEEEEcCCCCCeeEEeC
Q 016953 332 STFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAVCGLI 380 (380)
Q Consensus 332 ~s~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g~~~~~~~t~l~ 380 (380)
++++++ +++++|+|+.|+++++|+++|++|+||+++++|||+|
T Consensus 334 ~~l~~~------~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~~~~TI~l 376 (548)
T 1q3q_A 334 TNVKDL------TPEDLGYAEVVEERKLAGENMIFVEGCKNPKAVTILI 376 (548)
T ss_dssp SSGGGC------CGGGCEEESEEEEEEETTEEEEEEECCSSCSSEEEEE
T ss_pred cccccC------CHHHCCCceEEEEEEecCceEEEEecCCCCCeEEEEE
Confidence 998765 5678999999999999999999999999999999985
No 4
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}
Probab=100.00 E-value=6.4e-81 Score=634.48 Aligned_cols=360 Identities=39% Similarity=0.624 Sum_probs=342.9
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhcCCC
Q 016953 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDG 92 (380)
Q Consensus 13 ~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDG 92 (380)
++.+|.+++.+|+.||..|++++|+||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++||+++|||
T Consensus 24 ~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~GDG 103 (553)
T 3ko1_A 24 SRTYGKEAVRANIAAVKAVEEALKSTYGPRGMDKMLVDSLGDITITNDGATILDKMDLQHPAAKLLVQIAKGQDEETADG 103 (553)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHGGGCSTTCCEEEEECTTSCEEEECCHHHHHHSSCCCSHHHHHHHHHHHTCSSSSSTT
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHhccCCcchhhHHHhhccceEEecCccchhhhhhccChhHHHHHHHhhCCcccccCC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccccCHHHHHHHHHHhhccCcCCCchHHHH
Q 016953 93 TTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFA 172 (380)
Q Consensus 93 ttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~~~~~l~~va~t~l~sK~~~~~~~~ls 172 (380)
|||++|||++||+++.+++.+|+||+.|++||+.|++.++++|+++ +++++..+++.|.++|+|+++||+.+.|+++|+
T Consensus 104 TTtvvVLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~-s~~v~~~d~e~L~~vA~tsl~sK~~~~~~~~i~ 182 (553)
T 3ko1_A 104 TKTAVIFSGELVKKAEDLLYKDVHPTIIISGYKKAEEVALQTIQEL-AQTVSINDTDLLRKIAMTSLSSKAVAGAREYIA 182 (553)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTT-CEECCTTCHHHHHHHHHHHHTTSSCCTTHHHHH
T ss_pred ceeEEEehHHHHHhHHHHHhcCCCceEEehhhhHHHHHHHHHHHHh-cCCCCCCcHHHHHHHHHHHhhHHhhhhHHHHHH
Confidence 9999999999999999999999999999999999999999999997 999886679999999999999999999999999
Q ss_pred HHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeEeeEEEcccccCCCCCccccCceEEEEEecccccccccc
Q 016953 173 NLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLG 252 (380)
Q Consensus 173 ~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~~kIll~~~~L~~~~~~~~ 252 (380)
+|+++|+.++.+. .+|...+|+++|+|.+..|+++.||++++|++|++++.|++||++++||||++++++|++++++.+
T Consensus 183 ~livdAv~~V~~~-~~G~~~~dl~~I~I~k~~Gg~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~d~~Le~~k~e~~ 261 (553)
T 3ko1_A 183 DIVVKAVTQVAEL-RGDKWYVDLDNIQIVKKAGGSINDTQLVYGIVVDKEVVHPGMPKRLENAKIALIDASLEVEKPELD 261 (553)
T ss_dssp HHHHHHHHHHCCC-TTSSCCCCGGGEEEEECCCSCGGGCEEESEEEECSCBSCTTSCSCCBSCEEEEECSCBSCCCCTTT
T ss_pred HHHHHHHHHHHHh-cCCceEEechhHHHHHHhCCccccceeeEEEEecccccCCCCccccccceEEEecCcccccCcccC
Confidence 9999999999542 235445888999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHhCCeEcc
Q 016953 253 VQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVS 332 (380)
Q Consensus 253 ~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa~ii~ 332 (380)
+++.++++++++.+.++|++++++++++|++.|++|||++++|++.+++||.++||++++++++.+|+|||++|||++++
T Consensus 262 ~~v~Iss~~~l~~~~~~E~~~l~~~vekI~~~g~~vvI~~~~I~~~al~~L~~~gI~~v~~v~k~~leria~~tGa~ivs 341 (553)
T 3ko1_A 262 AEIRINDPTQMQKFLDEEENLIKEKVDKILATGANVIICQKGIDEVAQSYLAKKGVLAVRRAKKSDLEKLARATGGRVVS 341 (553)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECSSCBCSHHHHHHHHHTCEEECCCCHHHHHHHHTTTTCCEES
T ss_pred ceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhhcceEEEeccChHHHHHHHHHhcchhhhhhhhhhhHHHHHHhhCCeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCcCCCCCCcccceeEEEEEEcCeeEEEEEcCCCCCeeEEeC
Q 016953 333 TFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAVCGLI 380 (380)
Q Consensus 333 s~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g~~~~~~~t~l~ 380 (380)
+++++ +++++|+|+.|+++++|+++|++|+||+++.+|||+|
T Consensus 342 ~l~~l------~~~~LG~a~~v~~~~ig~d~~~~i~g~~~~~~~TI~l 383 (553)
T 3ko1_A 342 NIDEI------SEQDLGYASLIEERKVGEDKMVFVEGAKNPKSISILI 383 (553)
T ss_dssp CGGGC------CSSSSEECSEEECCCCSSSCCEEEESCSSSSCEEEEE
T ss_pred ccccC------ChhhcchHHHHHHhhcCcceEEEeccCCCCceEEEee
Confidence 98764 6678999999999999999999999999999999985
No 5
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B
Probab=100.00 E-value=7.7e-81 Score=634.23 Aligned_cols=361 Identities=42% Similarity=0.632 Sum_probs=341.2
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhcCC
Q 016953 12 GERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGD 91 (380)
Q Consensus 12 ~~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GD 91 (380)
.++.+|.+++..|+.||..+++++|+||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++||+++||
T Consensus 14 ~~~~~g~~a~~~ni~a~~~la~~vkttLGP~G~~kml~~~~g~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~GD 93 (543)
T 1a6d_B 14 TKRESGKDAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKMMVEVSKTQDSFVGD 93 (543)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHTTSSTTCCCEEEECTTCCEEEECCHHHHHHHSCCCSHHHHHHHHHHTCTTCCCTT
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHhhccchHHHHHHHHHHhcCCEECC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccccCHHHHHHHHHHhhccCcCCCchHHH
Q 016953 92 GTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFF 171 (380)
Q Consensus 92 Gttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~~~~~l~~va~t~l~sK~~~~~~~~l 171 (380)
||||++|||++||+++.+++.+|+||+.|++||+.|++.++++|+++ +++++..+++.|.++|+|+|+||+.++|+++|
T Consensus 94 GTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~-a~~v~~~~~~~l~~va~tsl~sKi~~~~~~~i 172 (543)
T 1a6d_B 94 GTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEI-STKIGADEKALLLKMAQTSLNSKSASVAKDKL 172 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH-CEECCTTHHHHHHHHHHHHHTTSGGGGGHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCCHHHHHHHHHHHhccccccccHHHH
Confidence 99999999999999999999999999999999999999999999997 88987656899999999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeEeeEEEcccccCCCCCccccCceEEEEEeccccccccc
Q 016953 172 ANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQL 251 (380)
Q Consensus 172 s~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~~kIll~~~~L~~~~~~~ 251 (380)
++|+++|+.++.+. .+|...+|+++|+|.+++|++++||++++|++|++++.|++||++++||||++++++|++++++.
T Consensus 173 ~~livdAv~~v~~~-~~g~~~~d~~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~~~~Le~~k~e~ 251 (543)
T 1a6d_B 173 AEISYEAVKSVAEL-RDGKYYVDFDNIQVVKKQGGAIDDTQLINGIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEF 251 (543)
T ss_dssp HHHHHHHHHHHEEE-CSSSEEECGGGEEEEEEESSCGGGCEEESEEEESCCCSSTTSCSEEEEEEEEEESSCBSCCCCSS
T ss_pred HHHHHHHHHHhccc-ccCCcccccceEEEEEecCCCccceeEEccEEEecCCCCCCCcceecCCeEEEEecccccccccC
Confidence 99999999999542 12434578899999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHhCCeEc
Q 016953 252 GVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMV 331 (380)
Q Consensus 252 ~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa~ii 331 (380)
++++.++++++++.+.++|++++++++++|++.|++|||++++|++.|++||.++||++++++++++|+|||++|||+++
T Consensus 252 ~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~v~k~~le~ia~~tGa~ii 331 (543)
T 1a6d_B 252 DTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIV 331 (543)
T ss_dssp EEEECCCSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHTCCEE
T ss_pred CceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCcCHHHHHHHHHCCeeEeccCCHHHHHHHHHHhCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCcCCCCCCcccceeEEEEEEcCeeEEEEEcCCCCCeeEEeC
Q 016953 332 STFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAVCGLI 380 (380)
Q Consensus 332 ~s~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g~~~~~~~t~l~ 380 (380)
++++++ +++++|+|+.|+++++|+++|++|+||+++++|||+|
T Consensus 332 s~l~~l------~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~~~~TI~l 374 (543)
T 1a6d_B 332 STIDEI------SSSDLGTAERVEQVKVGEDYMTFVTGCKNPKAVSILV 374 (543)
T ss_dssp SCGGGC------CGGGCEEEEEEEEEEETTEEEEEEEEESSSSCEEEEE
T ss_pred cccccC------CHHHCCCceEEEEEEecCceEEEEecCCCCceEEEEe
Confidence 998765 5678999999999999999999999999999999985
No 6
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A
Probab=100.00 E-value=3.7e-80 Score=628.76 Aligned_cols=357 Identities=39% Similarity=0.618 Sum_probs=344.1
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhcCCC
Q 016953 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDG 92 (380)
Q Consensus 13 ~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDG 92 (380)
++.+|.+++.+|+.||..|++++|+||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++||+++|||
T Consensus 13 ~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~GDG 92 (543)
T 3ruv_A 13 KRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVAKTQEKEVGDG 92 (543)
T ss_dssp EEEETHHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECTTSCEEEECCHHHHHHHSCCCCHHHHHHHHHHHHHHHHTSSC
T ss_pred chhccHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCEEEECCHHHHHHHccCcCHHHHHHHHHHHHHHhhhCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccccCHHHHHHHHHHhhccCcCCCchHHHH
Q 016953 93 TTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFA 172 (380)
Q Consensus 93 ttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~~~~~l~~va~t~l~sK~~~~~~~~ls 172 (380)
|||++|||++||+++.+++.+|+||+.|++||+.|++.++++|+++ +++++..+++.|.++|+|+++||+.+.|+++|+
T Consensus 93 TTtvvVLA~~Ll~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~-s~~v~~~d~~~L~~va~tsl~sK~~~~~~~~i~ 171 (543)
T 3ruv_A 93 TTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTI-ACEVGAQDKEILTKIAMTSITGKGAEKAKEKLA 171 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHH-CEECCTTCHHHHHHHHHHHHHHTCGGGCCHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHh-hCCCCCCCHHHHHHHHHHHhcccccchhHHHHH
Confidence 9999999999999999999999999999999999999999999997 999886679999999999999999999999999
Q ss_pred HHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeEeeEEEcccccCCCCCccccCceEEEEEecccccccccc
Q 016953 173 NLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLG 252 (380)
Q Consensus 173 ~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~~kIll~~~~L~~~~~~~~ 252 (380)
+|+++|+.++.+. +|. +|+++|+|.+..|+++.||++++|++|++++.|++||++++||||++++++|++++++.+
T Consensus 172 ~livdAv~~V~~~--~g~--~dl~~I~V~k~~Gg~~~ds~lv~G~v~dk~~~~~~m~~~~~n~kIll~~~~Le~~k~e~~ 247 (543)
T 3ruv_A 172 EIIVEAVSAVVDD--EGK--VDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETETD 247 (543)
T ss_dssp HHHHHHHHHHCCT--TSC--CCGGGEEEEEEECSCGGGCEEESSEEESCCCSCTTSCSEEEEEEEEEESSCBSCCCCSSC
T ss_pred HHHHHHHHHhhcc--CCC--cccceEEEEEcCCCCcccceeecceEEeccccCccccccccCcEEEEEcccccccccccC
Confidence 9999999999532 243 778899999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHhCCeEcc
Q 016953 253 VQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVS 332 (380)
Q Consensus 253 ~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa~ii~ 332 (380)
+++.++++++++.+.++|++++++++++|++.|++|||++++|++.|++||.++||++++++++.+|+|||++|||++++
T Consensus 248 ~~v~Iss~~~l~~~~~~E~~~l~~~ve~I~~~g~~vvi~~~~I~~~al~~L~~~gI~~v~~v~k~~le~ia~~tGa~iis 327 (543)
T 3ruv_A 248 AEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVIA 327 (543)
T ss_dssp CCEEECSTTHHHHHHHHHHHHHHHHHHHHHHHTCSEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHCCCEES
T ss_pred ceeEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHcCcEEEeeCCHHHHHHHHHHhCCceec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCcCCCCCCcccceeEEEEEEcCeeEEEEEcCCCCCeeEEeC
Q 016953 333 TFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAVCGLI 380 (380)
Q Consensus 333 s~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g~~~~~~~t~l~ 380 (380)
+++++ +++++|+|+.|+++++|+++|++|+||+++.+|||+|
T Consensus 328 ~l~~l------~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~~~~TI~l 369 (543)
T 3ruv_A 328 AIAAL------SAQDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLI 369 (543)
T ss_dssp CGGGC------CGGGCEEEEEEEEEEETTEEEEEEECCSSCSSEEEEE
T ss_pred ccccC------CHHHCCcccEEEEEEeCCceEEEEECCCCCceeEEEe
Confidence 98764 6678999999999999999999999999999999985
No 7
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d*
Probab=100.00 E-value=9e-81 Score=631.29 Aligned_cols=370 Identities=31% Similarity=0.492 Sum_probs=349.5
Q ss_pred CccccccccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccChHHHHHHH
Q 016953 1 MAISSQTLDILGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVE 80 (380)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~ 80 (380)
|.++++++...+++.+|.+++..|+.||..+++++|+||||+||+|||+++.|+++|||||+|||++|+++||+++|+++
T Consensus 1 ~~~~~~~~~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~akll~e 80 (528)
T 3p9d_D 1 MSAKVPSNATFKNKEKPQEVRKANIIAARSVADAIRTSLGPKGMDKMIKTSRGEIIISNDGHTILKQMAILHPVARMLVE 80 (528)
T ss_dssp ------CCCSSCBCCCHHHHHHHHHHHHHHHHHHHTTTSSTTCCCEEEECSSCCEEEECCHHHHHHHSCCCCTTHHHHHH
T ss_pred CCCCcccccccchhcchHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEECCHHHHHHHcccCCHHHHHHHH
Confidence 67788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccccCHHHHHHHHHHhhc
Q 016953 81 LAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMS 160 (380)
Q Consensus 81 ~~~~~~~~~GDGttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~~~~~l~~va~t~l~ 160 (380)
+|++||+++||||||++|||++||+++.+++.+|+||+.|++||+.|++.++++|+++ +++++..+++.|.++|+|+++
T Consensus 81 ~a~~qd~e~GDGTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~-s~~v~~~~~e~l~~va~tsl~ 159 (528)
T 3p9d_D 81 VSAAQDSEAGDGTTSVVILTGALLGAAERLLNKGIHPTIIADSFQSAAKRSVDILLEM-CHKVSLSDREQLVRAASTSLS 159 (528)
T ss_dssp HHHHHHHHTCSCSHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTT-CCCCCSCCHHHHHHHHHHHSC
T ss_pred HHHHhhhhhCCChhhHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHh-hCCCCCCCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999997 999886679999999999999
Q ss_pred cCcCCCchHHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeEeeEEEcccccCCC-CCccccCceEEE
Q 016953 161 SKLIGGDSDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQG-MPLRVAPAKIAC 239 (380)
Q Consensus 161 sK~~~~~~~~ls~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~-~~~~~~~~kIll 239 (380)
||+++.|+++|++|+++|+.++.+. .+| .+++++|+|++++|+++.||++++|++|++++.|++ ||++++||||++
T Consensus 160 sK~~~~~~~~i~~livdAv~~V~~~-~~~--~i~v~~I~I~k~~Gg~~~ds~lv~G~v~dk~~~~~~~m~~~ien~kIll 236 (528)
T 3p9d_D 160 SKIVSQYSSFLAPLAVDSVLKISDE-NSK--NVDLNDIRLVKKVGGTIDDTEMIDGVVLTQTAIKSAGGPTRKEKAKIGL 236 (528)
T ss_dssp SSSCSTTHHHHHHHHHHHHHTTCCT-TTT--CCCGGGSBCCCCCSSCSCCCEEESSCBCCCCCCCSSSCCSEESSEEEEE
T ss_pred CCccchhHHHHHHHHHHHHHHhccc-cCC--ccceEEEEEEEecCCCccceEEEeeeEEeecccCcccCcccccCceEEE
Confidence 9999999999999999999998532 133 467789999999999999999999999999999998 999999999999
Q ss_pred EEecccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCC-----CHHHHHHHHHcCceEEeeC
Q 016953 240 LDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGI-----DDMALKYFVEAGAIAVRRV 314 (380)
Q Consensus 240 ~~~~L~~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I-----~~~al~~l~~~~I~vv~~v 314 (380)
++++|++++++.++++.++++++++.++++|++++++++++|++.|++|||++++| ++.+++||.++||++++++
T Consensus 237 ~~~~le~~k~~~~~~i~i~~~~~~~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~~~a~~~~al~~L~~~~I~av~~~ 316 (528)
T 3p9d_D 237 IQFQISPPKPDTENNIIVNDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDLALHFLSKLNIMVVKDI 316 (528)
T ss_dssp ECCCSSCCCCSSEEEEEESSSSHHHHHTHHHHHHHHHHHHHHHHTTCCEEEESSCSCTTSCSCHHHHHHTTTSCCEEECC
T ss_pred EeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCcccccCCHHHHHHHHHcCcEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred ChhHHHHHHHHhCCeEccccccccCCcCCCCCCcccceeEEEEEEcCeeEEEEEcCC--C-CCeeEEeC
Q 016953 315 RKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTK--T-TSAVCGLI 380 (380)
Q Consensus 315 ~~~~l~~la~~tGa~ii~s~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g~~--~-~~~~t~l~ 380 (380)
++.+|+|||++|||++++++++ ++++++|+|+.|++.++|+++|++|+||+ + +.+|||+|
T Consensus 317 ~k~~le~ia~~tGa~ii~~~~~------l~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~~~~~~~tI~l 379 (528)
T 3p9d_D 317 EREEIEFLSKGLGCKPIADIEL------FTEDRLDSADLVEEIDSDGSKIVRVTGIRNNNARPTVSVVI 379 (528)
T ss_dssp CTHHHHHHHHHHTCCCCSCSTT------CCSSSEEEESCEECCEETTEECCBCTTBCCGGGCCCCEEEC
T ss_pred CHHHHHHHHHHHCCEEeccccc------CCHHHCCcccEEEEEEECCEEEEEEEcccccCCCceEEEEE
Confidence 9999999999999999999865 46789999999999999999999999999 6 89999986
No 8
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a*
Probab=100.00 E-value=7.9e-81 Score=635.10 Aligned_cols=372 Identities=62% Similarity=0.971 Sum_probs=350.6
Q ss_pred ccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhh
Q 016953 8 LDILGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDR 87 (380)
Q Consensus 8 ~~~~~~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~ 87 (380)
|...+++.+|.+++.+|+.||..|++++|+||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++|++
T Consensus 13 ~~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~ 92 (559)
T 3p9d_A 13 LFLGGEKISGDDIRNQNVLATMAVANVVKSSLGPVGLDKMLVDDIGDFTVTNDGATILSLLDVQHPAGKILVELAQQQDR 92 (559)
T ss_dssp CCSSCEEEETHHHHHHHHHHHHHHHHHTTTTSSTTCCEEEECCSSSCCCEECCHHHHHHHHCCCSHHHHHHHHHHHHHHH
T ss_pred hhccccccchHHHHHHHHHHHHHHHHHHHhccCCCCCeeEeEcCCCCEEEECCHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 55566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHh-hhcccccccCHHHHHHHHHHhhccCcCCC
Q 016953 88 EVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNE-KLAVKVEKLGKDSLVNCAKTSMSSKLIGG 166 (380)
Q Consensus 88 ~~GDGttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~-~~s~~v~~~~~~~l~~va~t~l~sK~~~~ 166 (380)
++||||||++|||++||+++.+++.+|+||+.|++||+.|++.++++|++ + +++++..+++.|.++|+|+++||+++.
T Consensus 93 e~GDGTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~~-s~~v~~~~~e~L~~vA~tsl~sK~~~~ 171 (559)
T 3p9d_A 93 EIGDGTTSVVIIASELLKRANELVKNKIHPTTIITGFRVALREAIRFINEVL-STSVDTLGKETLINIAKTSMSSKIIGA 171 (559)
T ss_dssp HTSSCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHT-GGGSCC--CTTHHHHHHHTTSSSGGGT
T ss_pred HcCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhc-ccCCCCCCHHHHHHHHHHHhccCcccc
Confidence 99999999999999999999999999999999999999999999999999 6 999886668899999999999999999
Q ss_pred chHHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeEeeEEEcccccCCCCCcccc--CceEEEEEecc
Q 016953 167 DSDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVA--PAKIACLDFNL 244 (380)
Q Consensus 167 ~~~~ls~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~--~~kIll~~~~L 244 (380)
|+++|++|+++|+.++.+...++...+++++|+|++++|++++||++++|++|++++.+++||++++ ||||++++++|
T Consensus 172 ~~~~i~~livdAv~~V~~~~~~~~~~i~l~~I~I~k~~Ggs~~ds~lv~G~v~dk~~~~~~m~~~ie~~n~kIll~~~~L 251 (559)
T 3p9d_A 172 DSDFFSNMVVDALLAVKTQNSKGEIKYPVKAVNVLKAHGKSATESLLVPGYALNCTVASQAMPKRIAGGNVKIACLDLNL 251 (559)
T ss_dssp THHHHHHHHHHHHHHHCCEESSSCEECCTTCCCEEEEESSCSSCCBCCSEECCCCCCSSTTSCSEECSSSBCEEEETTCC
T ss_pred hhHHHHHHHHHHHHHhcccccCCCCccchhHeEEEEecCCCccceeEeccEEEeecccCCCcceeeccCCceEEEEeccc
Confidence 9999999999999999531212223577889999999999999999999999999999999999999 99999999999
Q ss_pred cccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHH
Q 016953 245 QKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAK 324 (380)
Q Consensus 245 ~~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~ 324 (380)
++++++.++++.++++++++.+.++|++++++++++|++.|++|||++++|++.|++||.++||++++++++.+|+|||+
T Consensus 252 e~~k~e~~~~v~is~~~~l~~i~~~E~~~l~~~le~I~~~g~~lvI~~~~I~~~al~~L~~~~I~av~~~~k~~le~ia~ 331 (559)
T 3p9d_A 252 QKARMAMGVQINIDDPEQLEQIRKREAGIVLERVKKIIDAGAQVVLTTKGIDDLCLKEFVEAKIMGVRRCKKEDLRRIAR 331 (559)
T ss_dssp SCCCCCTTCCEEECSSSCHHHHHHHHHHHHHHHHHHHHTTCCSEEEESSCCCGGGTHHHHHTTCEEESSCCHHHHHHHHH
T ss_pred cccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCceEccCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCeEccccccccCCcCCCCCCcccceeEEEEEEcCeeEEEEEcCCCCCeeEEeC
Q 016953 325 ATGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAVCGLI 380 (380)
Q Consensus 325 ~tGa~ii~s~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g~~~~~~~t~l~ 380 (380)
+|||++++++..+...++++++++|+|+.|+++++++++|++|+||+++.+|||+|
T Consensus 332 ~TGa~iis~~~~l~~~e~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~~~~tI~l 387 (559)
T 3p9d_A 332 ATGATLVSSMSNLEGEETFESSYLGLCDEVVQAKFSDDECILIKGTSKHSSSSIIL 387 (559)
T ss_dssp HSSCCCBCCSCCSTTCCCCCTTTSCCEEEEEEEECSSCEEECEEEESSSCCCCEEE
T ss_pred HhCCEEEeccccccccccCCHhHCccceEEEEEEEcCceEEEEEcCCCCCEEEEEE
Confidence 99999999997665435678899999999999999999999999999999999985
No 9
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=8.4e-80 Score=622.46 Aligned_cols=355 Identities=34% Similarity=0.534 Sum_probs=339.6
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhcCC
Q 016953 12 GERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGD 91 (380)
Q Consensus 12 ~~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GD 91 (380)
.++.+|.+++.+|+.||..+++++|+||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++||+++||
T Consensus 4 ~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~~~GD 83 (515)
T 3iyg_H 4 TDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGD 83 (515)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHHhhCcCCCCCeEEEECCCCCeEEECCHHHHHHHccCCCHHHHHHHHHHHHhhceeCc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccccC----HHHHHHHHHHhhccCcCCCc
Q 016953 92 GTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLG----KDSLVNCAKTSMSSKLIGGD 167 (380)
Q Consensus 92 Gttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~~----~~~l~~va~t~l~sK~~~~~ 167 (380)
||||++|||++||+++.+++.+|+||+.|++||+.|++.++++|+++ +++++..+ ++.|.++|+|+++||+++.+
T Consensus 84 GTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~-a~~v~~~~~~~~~~~L~~va~tsl~sK~~s~~ 162 (515)
T 3iyg_H 84 GTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEI-AVTVKKEDKVEQRKLLEKCAMTALSSKLISQQ 162 (515)
T ss_pred chhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHh-hcccccCChHHHHHHHHHHHHHHhcCCccccc
Confidence 99999999999999999999999999999999999999999999997 88886435 67789999999999999999
Q ss_pred hHHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeEeeEEEcccccCCCC---CccccCceEEEEEecc
Q 016953 168 SDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGM---PLRVAPAKIACLDFNL 244 (380)
Q Consensus 168 ~~~ls~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~---~~~~~~~kIll~~~~L 244 (380)
+++|++|+++|+.++. . .+|++.|+|.++.|++..||++++|++|++++.|++| |++++||||++++++|
T Consensus 163 ~~~i~~livdAv~~V~---~----~~d~~~I~V~k~~Gg~~~ds~lv~G~~~dk~~~~p~~~~~p~~~en~kIll~~~~L 235 (515)
T 3iyg_H 163 KAFFAKMVVDAVMMLD---D----LLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVEL 235 (515)
T ss_pred HHHHHHHHHHHHHHhc---c----cCCcceEEEEecCCCCccceEEEeeeEEecCccCcccccCCccccccEEEEEcccc
Confidence 9999999999999983 1 4677899999999999999999999999999999875 7899999999999999
Q ss_pred cccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHH
Q 016953 245 QKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAK 324 (380)
Q Consensus 245 ~~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~ 324 (380)
++++++.++++.++++++++.+.++|++++++++++|.+.|++|||++++|++.+++||.++||++++++++.+|+|||+
T Consensus 236 e~~k~e~~~~v~is~~~~l~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~dla~~~l~~~gI~~v~~~~k~~leria~ 315 (515)
T 3iyg_H 236 ELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMM 315 (515)
T ss_pred cccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCcccHHHHHHHHHcCCcccccccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCeEccccccccCCcCCCCCCcccceeEEEEEEcCeeEEEEEcCCCCCeeEEeC
Q 016953 325 ATGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAVCGLI 380 (380)
Q Consensus 325 ~tGa~ii~s~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g~~~~~~~t~l~ 380 (380)
+|||+++++++++ +++++|+|+.|+++++|+++|++|+||+++.+|||++
T Consensus 316 ~tGa~ii~~l~~~------~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~~~~tI~l 365 (515)
T 3iyg_H 316 ACGGSIQTSVNAL------SSDVLGRCQVFEETQIGGERYNFFTGCPKAKTCTIIL 365 (515)
T ss_pred HhCCEEeeccccC------CHHHCCcccEEEEEEEcCeEEEEEecCCCCceEEEEE
Confidence 9999999998764 6678999999999999999999999999999999985
No 10
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A*
Probab=100.00 E-value=4.7e-80 Score=628.20 Aligned_cols=359 Identities=42% Similarity=0.664 Sum_probs=343.2
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhcCC
Q 016953 12 GERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGD 91 (380)
Q Consensus 12 ~~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GD 91 (380)
.++.+|.+++.+|+.||..+++++|+||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++||+++||
T Consensus 15 ~~~~~g~~a~~~ni~a~~~la~~vkttLGP~G~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~GD 94 (545)
T 1a6d_A 15 TQREQGKNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPTAKMIVEVSKAQDTAVGD 94 (545)
T ss_dssp --CEEHHHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECSSSCEEEECCHHHHHHHSCCCSHHHHHHHGGGGCTTTCSTT
T ss_pred chhhchHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCcHHHHHHhhhccchHHHHHHHHHHhcCCEECC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccccCHHHHHHHHHHhhccCcCCCchHHH
Q 016953 92 GTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFF 171 (380)
Q Consensus 92 Gttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~~~~~l~~va~t~l~sK~~~~~~~~l 171 (380)
||||++|||++||+++.+++.+|+||+.|++||+.|++.++++|+++ +++ + .+++.|.++|+|+|+||+.++|+++|
T Consensus 95 GTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~-s~~-~-~~~~~l~~va~tsl~sKi~~~~~~~i 171 (545)
T 1a6d_A 95 GTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEI-AEK-S-TDDATLRKIALTALSGKNTGLSNDFL 171 (545)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH-CEE-C-CCHHHHHHHHHHHTTTSSCCSTHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHh-cCC-C-CCHHHHHHHHHHHHhcccccccHHHH
Confidence 99999999999999999999999999999999999999999999997 888 6 67899999999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeEeeEEEcccccCCCCCccccCceEEEEEeccccccccc
Q 016953 172 ANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQL 251 (380)
Q Consensus 172 s~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~~kIll~~~~L~~~~~~~ 251 (380)
++|+++|+.++.+.. .|...+|++.|+|.+++|++++||++++|++|++++.|++||++++||||++++++|++++++.
T Consensus 172 ~~livdAv~~v~~~~-~g~~~~d~~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~~~~Le~~k~e~ 250 (545)
T 1a6d_A 172 ADLVVKAVNAVAEVR-DGKTIVDTANIKVDKKNGGSVNDTQFISGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEI 250 (545)
T ss_dssp HHHHHHHHHHHCEES-SSSEECCGGGEEEEECCCSCSTTCEEESEEEESCCCSCTTSCSEEEEEEEEEECSCBSCCCCSS
T ss_pred HHHHHHHHHHHhccc-CCCcccccceEEEEEecCCCceeeEEEeeEEEeccCCCCCCcceecCCEEEEEecCCCcccccC
Confidence 999999999996432 2334578889999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHhCCeEc
Q 016953 252 GVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMV 331 (380)
Q Consensus 252 ~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa~ii 331 (380)
++++.++++++++.+.++|++++++++++|++.|++|||++++|++.|++||.++||++++++++++|+|||++|||+++
T Consensus 251 ~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~~~k~~le~ia~~tGa~ii 330 (545)
T 1a6d_A 251 EAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIV 330 (545)
T ss_dssp CCEEEECSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCBCHHHHHHHHHHTCEEECSCCHHHHHHHHHHHCCCEE
T ss_pred CceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCccHHHHHHHHHCCeeEeccCCHHHHHHHHHHhCCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCcCCCCCCcccceeEEEEEEcCeeEEEEEcCCCCCeeEEeC
Q 016953 332 STFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAVCGLI 380 (380)
Q Consensus 332 ~s~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g~~~~~~~t~l~ 380 (380)
++++++ +++++|+|+.|+++++|+++|++|+||+++++|||+|
T Consensus 331 s~l~~~------~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~~~~TI~l 373 (545)
T 1a6d_A 331 TDLDDL------TPSVLGEAETVEERKIGDDRMTFVMGCKNPKAVSILI 373 (545)
T ss_dssp SSGGGC------CGGGCEEEEEEEEEEETTEEEEEEEEESCSSCEEEEE
T ss_pred cccccC------CHHHCCCceEEEEEEecCceEEEEecCCCCceEEEEE
Confidence 998764 5678999999999999999999999999999999985
No 11
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A
Probab=100.00 E-value=7.3e-79 Score=615.86 Aligned_cols=354 Identities=34% Similarity=0.524 Sum_probs=339.4
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCC--CCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhc
Q 016953 12 GERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDI--GDVTITNDGATILKMLEVEHPAAKVLVELAELQDREV 89 (380)
Q Consensus 12 ~~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~--g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~ 89 (380)
.++.+|.+++.+|+.||..+++++|+||||+||+|||+++. |+++|||||+|||++|+++||+|+|++++|++||+++
T Consensus 3 ~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~~~G~~~iTnDG~tIlk~i~v~hp~Akll~e~a~~qd~e~ 82 (513)
T 3iyg_B 3 ADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEV 82 (513)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHhccCCCCCeEEeecCCCCCCeEEECCHHHHHHHccccCHHHHHHHHHHHHhhhhh
Confidence 46789999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccc---cCHHHHHHHHHHhhccCcCCC
Q 016953 90 GDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEK---LGKDSLVNCAKTSMSSKLIGG 166 (380)
Q Consensus 90 GDGttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~---~~~~~l~~va~t~l~sK~~~~ 166 (380)
||||||++|||++||+++.+++.+|+||+.|++||+.|++.++++|+++ +++++. .+++.|.++|+|+++||+.++
T Consensus 83 GDGTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~-s~~v~~~~~~~~~~l~~va~tslssK~~~~ 161 (513)
T 3iyg_B 83 GDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAARQALLNS-AVDHGSDEVKFRQDLMNIAGTTLSSKLLTH 161 (513)
T ss_pred CCChhhhHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHh-CcCcccccccCHHHHHHHHHhhhccccccc
Confidence 9999999999999999999999999999999999999999999999997 888863 257899999999999999999
Q ss_pred chHHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeEeeEEEcccccCCCCCccccCceEEEEEecccc
Q 016953 167 DSDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQK 246 (380)
Q Consensus 167 ~~~~ls~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~~kIll~~~~L~~ 246 (380)
|+++|++|+++|+.++.+ .+|++.|+|+++.|++..||++++|++|++++.++ ||++++||||++++++|++
T Consensus 162 ~~~~i~~livdAv~~V~~-------~~d~~~I~V~ki~gg~~~ds~lv~G~v~dk~~~~~-m~~~~en~kIll~~~~Le~ 233 (513)
T 3iyg_B 162 HKDHFTKLAVEAVLRLKG-------SGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVN-QPKRIENAKILIANTGMDT 233 (513)
T ss_pred chHHHHHHHHHHHHHhcc-------cCCcCeEEEEEeCCCCccceeEEeeEEEeccccCC-CceeecCceEEEEcCCccc
Confidence 999999999999999842 26778999999999999999999999999999887 9999999999999999999
Q ss_pred cccc-cceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHH
Q 016953 247 TKMQ-LGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKA 325 (380)
Q Consensus 247 ~~~~-~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~ 325 (380)
++++ .++++.+++++++..+.++|++++++++++|++.|++|||++++|++.+++||.++||++++++++.+|+|||++
T Consensus 234 ~k~e~~~~~v~iss~~~l~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~~~al~~L~~~~I~av~~~~~~~le~ia~~ 313 (513)
T 3iyg_B 234 DKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFVGVERLALV 313 (513)
T ss_pred ccccccCCceEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCCccHHHHHHHHHcCceEEecCCHHHHHHHHHH
Confidence 9999 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCeEccccccccCCcCCCCCCcccceeEEEEEEcCeeEEEEEcCCCCCeeEEeC
Q 016953 326 TGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAVCGLI 380 (380)
Q Consensus 326 tGa~ii~s~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g~~~~~~~t~l~ 380 (380)
|||+++++++++ +++++|+|+.|+++.+|+++|++|+||+++++|||+|
T Consensus 314 tGa~ii~~l~~l------~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~~~~tI~l 362 (513)
T 3iyg_B 314 TGGEIASTFDHP------ELVKLGSCKLIEEVMIGEDKLIHFSGVALGEACTIVL 362 (513)
T ss_pred hCCEEecccccC------CHhHCCcccEEEEEEECCeEEEEEecCCCCceEEEEe
Confidence 999999998764 6678999999999999999999999999999999986
No 12
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=6.6e-79 Score=616.81 Aligned_cols=360 Identities=33% Similarity=0.518 Sum_probs=343.2
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhcC
Q 016953 11 LGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVG 90 (380)
Q Consensus 11 ~~~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~G 90 (380)
++++.+|.+++.+|+.||..+++++|+||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++||+++|
T Consensus 3 ~~~~~~g~~~~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~akll~~~a~~qd~~~G 82 (518)
T 3iyg_D 3 YQDRDKPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAG 82 (518)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhccCCCCCceeeeCCCCCeEEECCHHHHHHHcccchHHHHHHHHHHHHhhhhhC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccccCHHHHHHHHHHhhccCcCCCchHH
Q 016953 91 DGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDF 170 (380)
Q Consensus 91 DGttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~~~~~l~~va~t~l~sK~~~~~~~~ 170 (380)
|||||++|||++||+++.+++.+|+||+.|++||+.|++.++++|+++ +++++..+++.|.++|+|+++||+.+.|+++
T Consensus 83 DGTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~-s~~v~~~~~~~l~~vA~tsl~sK~~~~~~~~ 161 (518)
T 3iyg_D 83 DGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDM-SRPVELSDRETLLNSAATSLNSKVVSQYSSL 161 (518)
T ss_pred CCceeHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHh-eeeCCCCChHHHHHHhHhhhccccchhhHHH
Confidence 999999999999999999999999999999999999999999999997 9999866789999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeEeeEEEcccccCCCCCccccCceEEEEEecccccccc
Q 016953 171 FANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQ 250 (380)
Q Consensus 171 ls~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~~kIll~~~~L~~~~~~ 250 (380)
|++|+++|+.++.+...+| .+|+++|+|.++.|++..||++++|++|++++.| +||+.++||||++++|+|++++++
T Consensus 162 i~~livdAv~~V~~~~~~~--~~d~~~I~V~k~~Gg~~~ds~lv~G~~~dk~~~~-~mp~~i~n~kIlll~~~Le~~k~~ 238 (518)
T 3iyg_D 162 LSPMSVDAVMKVIDPATAT--SVDLRDIKIVKKLGGTIDDCELVEGLVLTQKVAN-SGITRVEKAKIGLIQFCLSAPKTD 238 (518)
T ss_pred HHHHHHHHHHHhhccccCC--CcccceEEEEEcCCCChhhheEeccEEEeccccc-CCCccccCceEEEEEeeccccccc
Confidence 9999999999995321233 4778899999999999999999999999999998 999999999999999999999999
Q ss_pred cceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEe-----CCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHH
Q 016953 251 LGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILT-----TKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKA 325 (380)
Q Consensus 251 ~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~-----~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~ 325 (380)
.+.++.++++++++.+.++|++++++++++|++.|++||++ +++|++.|++||.++||++++++++.+|+|||++
T Consensus 239 ~~~~i~is~~~~~~~~~~~E~~~l~~~le~I~~~g~~lvi~~k~i~~~~I~~~Al~~L~~~~I~av~~~~~~~le~ia~~ 318 (518)
T 3iyg_D 239 MDNQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVVKDIEREDIEFICKT 318 (518)
T ss_pred cCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccccccCcCHHHHHHHHHcCcEEEecCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 8999999999999999999999999999999999
Q ss_pred hCCeEccccccccCCcCCCCCCcccceeEEEEEEcC-eeEEEEEcCCC-CCeeEEeC
Q 016953 326 TGATMVSTFADMEGEETFDSSLLGSADEVVEERVAD-DDVIMIKGTKT-TSAVCGLI 380 (380)
Q Consensus 326 tGa~ii~s~~~l~~~~~~~~~~lG~~~~v~~~~ig~-~~~~~f~g~~~-~~~~t~l~ 380 (380)
|||+++++++++ +++++|+|+.|++.++|+ ++|++|+||+. +++|||+|
T Consensus 319 tGa~ii~~l~~l------~~~~LG~a~~v~~~~~g~~~~~~~~~g~~~~~~~~tI~l 369 (518)
T 3iyg_D 319 IGTKPVAHVDQF------TADMLGSAELAEEVSLNGSGKLIKITGCASPGKTVTIVV 369 (518)
T ss_pred hCCEEecccccC------CHHHCCcCcEEEEEEeCCCceEEEEECCCCCCceEEEEE
Confidence 999999998764 667899999999999999 89999999998 89999986
No 13
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=1.1e-78 Score=615.13 Aligned_cols=359 Identities=34% Similarity=0.475 Sum_probs=341.8
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhcCC
Q 016953 12 GERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGD 91 (380)
Q Consensus 12 ~~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GD 91 (380)
.++.+|.+++.+|+.||..+++++|+||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++|++++||
T Consensus 3 ~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~g~~~iTnDG~tIlk~i~~~hP~Akll~~~a~~qd~~~GD 82 (515)
T 3iyg_E 3 KSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGD 82 (515)
T ss_pred chhhchHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEEcCCCCeEEeCcHHHHHHHcccCCHHHHHHHHHHHHhhhhhCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccc--cCHHHHHHHHHHhhccCcCCCchH
Q 016953 92 GTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEK--LGKDSLVNCAKTSMSSKLIGGDSD 169 (380)
Q Consensus 92 Gttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~--~~~~~l~~va~t~l~sK~~~~~~~ 169 (380)
||||++|||++||+++.+++.+|+||+.|++||+.|++.++++|+++ +++++. .+++.|.++|+|+++||+++.+.+
T Consensus 83 GTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~-s~~v~~~~~~~~~l~~vA~tsl~sK~i~~~~~ 161 (515)
T 3iyg_E 83 GTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLDKI-SDSVLVDMKNTEPLIQTAKTTLGSKVVNSCHR 161 (515)
T ss_pred chhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHh-ceecCCCccCHHHHHHHHHHHhcccchhHHHH
Confidence 99999999999999999999999999999999999999999999997 888753 457899999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeEeeEEEcccccCCCCCccccCceEEEEEeccccccc
Q 016953 170 FFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKM 249 (380)
Q Consensus 170 ~ls~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~~kIll~~~~L~~~~~ 249 (380)
+|++++++|+..+.+.. + ..+|+++|+|+++.|+++.||++++|++|++++.|++||++.+||||++++||++++++
T Consensus 162 ~l~~l~~dav~~V~~~~--~-~~~d~~~I~I~k~~Ggs~~ds~lv~G~~~dk~~~~~~m~~~~~~~kIall~~~le~~k~ 238 (515)
T 3iyg_E 162 QMAEIAVNAVLTVADMQ--R-RDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKP 238 (515)
T ss_pred HHHHHHHHHHHhhcccc--c-CCCCcccEEEEEecCCCcccceEEeeEEEecccccccccccCCCceEEEEcCccccccc
Confidence 99999999999985422 1 24778899999999999999999999999999999999999999999999999999999
Q ss_pred ccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHhCCe
Q 016953 250 QLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGAT 329 (380)
Q Consensus 250 ~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa~ 329 (380)
+.++++.++++++++.+.++|++++++++++|++.|++|||++++|++.|++||.++||++++++++.+|+|||++|||+
T Consensus 239 ~~~~~~~is~~~~l~~~~~~E~~~l~~~lekI~~~g~~vvi~~~~I~~~al~~L~~~~I~~v~~v~k~~le~ia~~tGa~ 318 (515)
T 3iyg_E 239 KTKHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQWGFDDEANHLLLQNDLPAVRWVGGPEIELIAIATGGR 318 (515)
T ss_pred cccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHHHCCCEEEeccCHHHHHHHHHHhCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccccccccCCcCCCCCCcccceeEEEEEEcC--eeEEEEEcCCCCCeeEEeC
Q 016953 330 MVSTFADMEGEETFDSSLLGSADEVVEERVAD--DDVIMIKGTKTTSAVCGLI 380 (380)
Q Consensus 330 ii~s~~~l~~~~~~~~~~lG~~~~v~~~~ig~--~~~~~f~g~~~~~~~t~l~ 380 (380)
++++++++ +++++|+|+.|+++++|+ ++|++|+||+++.+|||+|
T Consensus 319 ii~~l~~l------~~~~LG~a~~v~~~~ig~~k~~~~~~~g~~~~~~~tI~l 365 (515)
T 3iyg_E 319 IVPRFSEL------TAEKLGFAGLVKEISFGTTKDKMLVIEQCKNSRAVTIFI 365 (515)
T ss_pred EecccccC------CHHHCCcceEEEEEEeccccceEEEEEcCCCCceEEEEE
Confidence 99998764 667999999999999997 8999999999999999985
No 14
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=1.5e-78 Score=613.62 Aligned_cols=355 Identities=27% Similarity=0.473 Sum_probs=338.9
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhcCCC
Q 016953 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDG 92 (380)
Q Consensus 13 ~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDG 92 (380)
+..+|.+++.+|+.||+++++++|+||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++||+++|||
T Consensus 4 ~~~~~~~a~~~ni~a~~~la~~vkttlGPkG~~kml~~~~g~~~iTnDG~tIlk~i~v~hp~akll~~~a~~qd~e~GDG 83 (517)
T 3iyg_Z 4 EVARAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGDG 83 (517)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCEEEECCHHHHHHHccCcCHHHHHHHHHHHHHHHHhCCC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccccCHHHHHHHHHHhhccCcCCCchHHHH
Q 016953 93 TTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFA 172 (380)
Q Consensus 93 ttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~~~~~l~~va~t~l~sK~~~~~~~~ls 172 (380)
|||++|||++||+++.+++.+|+||+.|++||+.|++.++++|+++ +++++. +++.|.++|+|+++||+.+.+.++|+
T Consensus 84 TTtvvvLa~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~-s~~v~~-~~~~L~~va~tsl~sKi~~~~~d~la 161 (517)
T 3iyg_Z 84 TTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQV-KVSKEM-DRETLIDVARTSLRTKVHAELADVLT 161 (517)
T ss_pred ceeHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhh-CcCCCC-CHHHHHHHHHHHhccccchhHHHHHH
Confidence 9999999999999999999999999999999999999999999997 888764 78899999999999999999999999
Q ss_pred HHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeEeeEEEcccccCCCCCccccCceEEEEEecccccccccc
Q 016953 173 NLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLG 252 (380)
Q Consensus 173 ~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~~kIll~~~~L~~~~~~~~ 252 (380)
+++++|+..+.+. + ..+|+++|+|+|++|++..||++++|++|++++.|++||++++||||++++++|++++++.+
T Consensus 162 ~l~vdaV~~V~~~---~-~~~dl~~I~I~k~~Gg~~~ds~lv~G~v~dk~~~~p~m~~~ien~kIll~~~~le~~k~e~~ 237 (517)
T 3iyg_Z 162 EAVVDSILAIKKQ---D-EPIDLFMVEIMEMKHKSETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEVN 237 (517)
T ss_pred HHHHHHhheeccC---C-CcCChhHheeeeecCCCccccceEeeEEEeccCCCCCccccccCCeEEEecccccccccccc
Confidence 9999999988532 1 24778899999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCe---------EEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHH
Q 016953 253 VQVLVTDPRELEKIRQREADMTKERIEKLLKAGAN---------VILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIA 323 (380)
Q Consensus 253 ~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~---------lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la 323 (380)
+++.++++++++.+.++|+++++..+++|...+++ |||++++|++.+++||.++||++++++++++|+|||
T Consensus 238 ~~~~i~~~~~l~~~~~~E~~~i~~~v~~I~~~~~~v~~~~~~~lvIi~~~~I~d~al~~L~~~gI~~v~~v~~~~leria 317 (517)
T 3iyg_Z 238 SGFFYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLDALAKEGIIALRRAKRRNMERLT 317 (517)
T ss_pred eeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCceEEEecccCCHHHHHHHHHCCCEEEEecCHHHHHHHH
Confidence 99999999999999999999999999999999877 599999999999999999999999999999999999
Q ss_pred HHhCCeEccccccccCCcCCCCCC-cccceeEEEEEEcCeeEEEEEcCCCCCeeEEeC
Q 016953 324 KATGATMVSTFADMEGEETFDSSL-LGSADEVVEERVADDDVIMIKGTKTTSAVCGLI 380 (380)
Q Consensus 324 ~~tGa~ii~s~~~l~~~~~~~~~~-lG~~~~v~~~~ig~~~~~~f~g~~~~~~~t~l~ 380 (380)
++|||+++++++++ ++++ +|+|+ |++.++|+++|++|+||+++++|||+|
T Consensus 318 ~~tGa~iv~~l~~l------~~~~~LG~a~-v~e~~ig~~~~~~~~g~~~~~~~TI~l 368 (517)
T 3iyg_Z 318 LACGGIALNSLDDL------NPDCLLGHAG-VYEYTLGEEKFTFIEKCNNPRSVTLLI 368 (517)
T ss_pred HHhCCEEecchhhC------cccccCCcce-EEEEEEcCceEEEEeCCCCchhheeee
Confidence 99999999998764 5678 99999 999999999999999999999999986
No 15
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g*
Probab=100.00 E-value=8.8e-79 Score=618.96 Aligned_cols=355 Identities=33% Similarity=0.510 Sum_probs=338.2
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhcCCC
Q 016953 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDG 92 (380)
Q Consensus 13 ~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDG 92 (380)
++.+|.+++.+|+.||..|++++|+||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++||+++|||
T Consensus 18 ~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~v~hP~Akll~e~a~~qd~e~GDG 97 (550)
T 3p9d_G 18 DASQGKGQIISNINACVAVQEALKPTLGPLGSDILIVTSNQKTTISNDGATILKLLDVVHPAAKTLVDISRAQDAEVGDG 97 (550)
T ss_dssp CEEESHHHHHHHHHHHHHHHTTTGGGSTTTCCCEEEECSSSCEEEECCHHHHTTTSCCCSHHHHHHHHHHHHHHTTTSSC
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHhccCCCCCcEEEECCCCCeEEECCHHHHHHHccCCCHHHHHHHHHHHHhhhhhCCC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccccC---HHHHHHHHHHhhccCcCCCchH
Q 016953 93 TTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLG---KDSLVNCAKTSMSSKLIGGDSD 169 (380)
Q Consensus 93 ttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~~---~~~l~~va~t~l~sK~~~~~~~ 169 (380)
|||++|||++||+++.+++.+|+||+.|++||+.|++.++++|+++ +++++..+ ++.|.++|+|+++||+++.|++
T Consensus 98 TTtvvVLA~~Ll~~a~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~-s~~v~~~~~~~~~~L~~vA~tsl~sK~~~~~~~ 176 (550)
T 3p9d_G 98 TTSVTILAGELMKEAKPFLEEGISSHLIMKGYRKAVSLAVEKINEL-AVDITSEKSSGRELLERCARTAMSSKLIHNNAD 176 (550)
T ss_dssp HHHHHHHHHHHHHTTSHHHHSSSCTTHHHHHHHHHHHHHHHHHHHS-EECCCCC------CHHHHHHHHHHHTTTGGGHH
T ss_pred ceehHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHh-cccCCCCcchhHHHHHHHHHHhccCccccccHh
Confidence 9999999999999999999999999999999999999999999997 98887555 7889999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeEeeEEEcccccCC---CCCccccCceEEEEEecccc
Q 016953 170 FFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQ---GMPLRVAPAKIACLDFNLQK 246 (380)
Q Consensus 170 ~ls~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~---~~~~~~~~~kIll~~~~L~~ 246 (380)
+|++|+++|+.++.+ ..+|+++|+|+++.|++++||++++|++|++++.|+ .||++++||||++++++|++
T Consensus 177 ~i~~livdAv~~V~~------~~~dl~~I~Vikv~Gg~~~ds~lv~G~~~dk~~~s~yf~~~~~~~en~kIll~~~~Le~ 250 (550)
T 3p9d_G 177 FFVKMCVDAVLSLDR------NDLDDKLIGIKKIPGGAMEESLFINGVAFKKTFSYAGFEQQPKKFNNPKILSLNVELEL 250 (550)
T ss_dssp HHHHHHHHHHHHCCS------SSCCGGGCCCCBCCSSCGGGCCCCSSEEECCCSSCTTCSCSCSCCSSCCEEEECSCCSC
T ss_pred HHHHHHHHHHHHhCc------cccCchheeEEEecCCCccceeEEeeEEEeccccccccccCcccccCceEEEecccccc
Confidence 999999999999842 147788999999999999999999999999999987 68999999999999999999
Q ss_pred cccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHh
Q 016953 247 TKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKAT 326 (380)
Q Consensus 247 ~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~t 326 (380)
++++.++++.+++++++..+.++|++++++++++|++.|++||+++++|++.+++||.++||++++++++++|+|||++|
T Consensus 251 ~k~e~~~~v~is~~~~l~~il~~E~~~l~~~v~~I~~~g~~vVi~~~~I~dla~~~L~~~gI~~v~~v~k~~lerIa~~t 330 (550)
T 3p9d_G 251 KAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSKLPIGDLATQFFADRNIFCAGRVSADDMNRVIQAV 330 (550)
T ss_dssp CCCSSCEEEEECSSSHHHHHHHHHHHHHHHHHHHHHTTTCSEEEESSCCCHHHHHTTGGGTCEEEECCCTTHHHHHHHHT
T ss_pred ccccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCccHHHHHHHHHcCCccccCcCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEccccccccCCcCCCCCCcccceeEEEEEEcCeeEEEEEcCCCCCeeEEeC
Q 016953 327 GATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAVCGLI 380 (380)
Q Consensus 327 Ga~ii~s~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g~~~~~~~t~l~ 380 (380)
||+++++++++ +++.+|+|+.|+++++|+++|++|+||+++++|||+|
T Consensus 331 Ga~iis~l~~l------~~~~LG~a~~v~~~~ig~e~~~~~~g~~~~~~~tI~l 378 (550)
T 3p9d_G 331 GGSIQSTTSDI------KPEHLGTCALFEEMQIGSERYNLFQGCPQAKTCTLLL 378 (550)
T ss_dssp CCCCBSSGGGC------CGGGCCCCSBCCCCCCSSSCCEEEBCCTTCCCCCCCB
T ss_pred CCceecchhhC------CHHHcCCceEEEEEEeCCeEEEEEecCCCCceeEEEE
Confidence 99999998775 5678999999999999999999999999999999985
No 16
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h*
Probab=100.00 E-value=6e-78 Score=614.95 Aligned_cols=358 Identities=26% Similarity=0.414 Sum_probs=334.6
Q ss_pred ccccc-HHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhcCC
Q 016953 13 ERQAG-QDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGD 91 (380)
Q Consensus 13 ~~~~~-~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GD 91 (380)
++++| .+++.+|+.||..|++++|+||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++|++++||
T Consensus 19 ~~~~g~~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~v~hP~Akll~e~a~~qd~e~GD 98 (568)
T 3p9d_H 19 NSYSNADGQIIKSIAAIRELHQMCLTSMGPCGRNKIIVNHLGKIIITNDAATMLRELDIVHPAVKVLVMATEQQKIDMGD 98 (568)
T ss_dssp CBCCCHHHHHHHHHHHHHHHHHHHHTTSSSSSCEEEEECTTSCEEEESCHHHHTTTCCCCCHHHHHHHHHHHHHHTTSSS
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHcccCCHHHHHHHHHHHhhhceeCC
Confidence 45677 57999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccc--cccCHHHHHHHHHHhhccCcCCCchH
Q 016953 92 GTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKV--EKLGKDSLVNCAKTSMSSKLIGGDSD 169 (380)
Q Consensus 92 Gttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v--~~~~~~~l~~va~t~l~sK~~~~~~~ 169 (380)
||||++|||++||+++.+++.+|+||+.|++||+.|++.++++|+++ +.++ +..+++.|.++|+|+++||+.+++ +
T Consensus 99 GTTtvvvLa~~Ll~~a~~ll~~GihP~~I~~G~~~A~~~a~e~L~~~-a~~v~~~~~~~~~l~~va~tsl~sK~~~~~-~ 176 (568)
T 3p9d_H 99 GTNLVMILAGELLNVSEKLISMGLSAVEIIQGYNMARKFTLKELDEM-VVGEITDKNDKNELLKMIKPVISSKKYGSE-D 176 (568)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH-CCSCCCCCCTTHHHHHHHHHHHTTTSTTCH-H
T ss_pred CceehHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHh-ccccCCCCCCHHHHHHHHHHHhhccCcchH-H
Confidence 99999999999999999999999999999999999999999999997 7765 334788999999999999999988 9
Q ss_pred HHHHHHHHHHHHhhcccC--CCCccccCCceeEEecCCCCcccceeEeeEEEcccccCCCCCcccc---CceEEEEEecc
Q 016953 170 FFANLVVEAVQAVKMTNQ--RGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVA---PAKIACLDFNL 244 (380)
Q Consensus 170 ~ls~lv~~av~~~~~~~~--~g~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~---~~kIll~~~~L 244 (380)
+|++|+++|+.++.+... .|...+|+++|+|++++|++++||++++|++|++++. +||++++ ||||++++|+|
T Consensus 177 ~i~~livdAv~~V~~~~~~~~~~~~~dl~~I~I~k~~Ggs~~dS~lv~G~v~dk~~~--~m~~~i~~~~n~kIlll~~~L 254 (568)
T 3p9d_H 177 ILSELVSEAVSHVLPVAQQAGEIPYFNVDSIRVVKIMGGSLSNSTVIKGMVFNREPE--GHVKSLSEDKKHKVAVFTCPL 254 (568)
T ss_dssp HHHHHHHHHHTTSCC---------CCCGGGCEEEEEESSCGGGCEEESSCCBSSCBS--SGGGSCCCCSSCEEEEECSCS
T ss_pred HHHHHHHHHHHHHhhccccccCCcccccceEEEEEccCCCcchheeeccEEEeeccc--CCcEEEecCCcceEEEEccCc
Confidence 999999999999854200 1223578889999999999999999999999999985 6999999 99999999999
Q ss_pred cccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHH
Q 016953 245 QKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAK 324 (380)
Q Consensus 245 ~~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~ 324 (380)
++++++.++++.+++++++..+.++|++++++++++|++.|++|||++++|++.+++||.++||++++++++.+|+|||+
T Consensus 255 e~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~~vvi~~~~I~~~al~~L~~~gI~av~~v~~~~leria~ 334 (568)
T 3p9d_H 255 DIANTETKGTVLLHNAQEMLDFSKGEEKQIDAMMKEIADMGVECIVAGAGVGELALHYLNRYGILVLKVPSKFELRRLCR 334 (568)
T ss_dssp SSCCCSSSCEEECCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECSCCCHHHHHHHHHHTCEEECCCCHHHHHHHHH
T ss_pred cccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEECCCcChHHHHHHHHCCeEEEecCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCeEccccccccCCcCCCCCCcccceeEEEEEEcCeeEEEEEcCC--CCCeeEEeC
Q 016953 325 ATGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTK--TTSAVCGLI 380 (380)
Q Consensus 325 ~tGa~ii~s~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g~~--~~~~~t~l~ 380 (380)
+|||+++++++++ +++++|+|+.|+++++|+++|++|+||+ .+++|||+|
T Consensus 335 ~tGa~ivs~l~~l------~~~~LG~a~~v~~~~ig~~~~~~~~g~~~l~~~~~TIll 386 (568)
T 3p9d_H 335 VCGATPLPRLGAP------TPEELGLVETVKTMEIGGDRVTVFKQEQGEISRTSTIIL 386 (568)
T ss_dssp HHSCCCCSSSSCC------CGGGCEECSCCCCCEETTEECBCCCCCSSSCCSSCEEEE
T ss_pred HhCCEEEeccccC------CHHHCCcceEEEEEEecCceEEEEecCCCCCCCeEEEEE
Confidence 9999999998764 6678999999999999999999999999 789999985
No 17
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e*
Probab=100.00 E-value=8.7e-78 Score=613.04 Aligned_cols=358 Identities=35% Similarity=0.521 Sum_probs=337.9
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhcCCC
Q 016953 13 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDG 92 (380)
Q Consensus 13 ~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDG 92 (380)
++.+|.+++.+|+.||..|++++|+||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++||+++|||
T Consensus 39 ~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~GDG 118 (562)
T 3p9d_E 39 KRQHGLEAKKSHILAARSVASIIKTSLGPRGLDKILISPDGEITITNDGATILSQMELDNEIAKLLVQLSKSQDDEIGDG 118 (562)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHTTTSSSTTCCEEEEECSSSCEEEESCHHHHHHHSCCCSHHHHHHHHHHHHHHHHTSSC
T ss_pred eecchHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCEEEECCHHHHHHHccCCCHHHHHHHHHHHHHHhhcCCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccccC----HHHHHHHHHHhhccCcCCCch
Q 016953 93 TTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLG----KDSLVNCAKTSMSSKLIGGDS 168 (380)
Q Consensus 93 ttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~~----~~~l~~va~t~l~sK~~~~~~ 168 (380)
|||++|||++||+++.+++.+|+||+.|++||+.|++.++++|+++ +++++..+ ++.|.++|+|+++||+++.+.
T Consensus 119 TTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~-s~~v~~~~~~~~~e~L~~vA~tSl~sK~i~~~~ 197 (562)
T 3p9d_E 119 TTGVVVLASALLDQALELIQKGIHPIKIANGFDEAAKLAISKLEET-CDDISASNDELFRDFLLRAAKTSLGSKIVSKDH 197 (562)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTTT-TSSSSBCCCSSCHHHHHHHHHHHHSSSTTTTTH
T ss_pred cccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHh-ccCcCCCcchhhHHHHHHHHHHhcCCchhHHHH
Confidence 9999999999999999999999999999999999999999999997 88886422 278999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeEeeEEEcccccCCCCCccc------cCceEEEEEe
Q 016953 169 DFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRV------APAKIACLDF 242 (380)
Q Consensus 169 ~~ls~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~------~~~kIll~~~ 242 (380)
++|++++++|+..+.+... ..+|+++|+|+++.|+++.||++++|++|++++.|++||++. +++||++++|
T Consensus 198 d~la~l~vdAV~~V~~~~~---~~~d~~~I~I~k~~Ggs~~ds~lveGmv~dk~~~sp~m~~~~~~~~~~~~~kIall~~ 274 (562)
T 3p9d_E 198 DRFAEMAVEAVINVMDKDR---KDVDFDLIKMQGRVGGSISDSKLINGVILDKDFSHPQMPKCVLPKEGSDGVKLAILTC 274 (562)
T ss_dssp HHHHHHHHHHHHTSSTTTC---SCCCCCCCEEEEESSSCGGGCEEESSEEESSCCCTTSCCC-----TTCSSCEECEEES
T ss_pred HHHHHHHHHHheeeccccc---CCCCcccEEEEEecCCChhhhceeeeEEEecCCCCCCcCcccccccccccceEEEecc
Confidence 9999999999998854221 257789999999999999999999999999999999999999 8999999999
Q ss_pred cccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHH
Q 016953 243 NLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHI 322 (380)
Q Consensus 243 ~L~~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~l 322 (380)
|+++++++.++++.++++++++.+.++|++++++++++|++.|++|||++++|++.|++||.++||++++++++.+|+||
T Consensus 275 ~le~~k~~~~~~~~Iss~~~~~~~~~~E~~~l~~~lekI~~~g~~vvI~~~~I~~~Al~~L~~~~I~~v~~v~k~~le~i 354 (562)
T 3p9d_E 275 PFEPPKPKTKHKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGADVVICQWGFDDEANHLLLQNDLPAVRWVGGQELEHI 354 (562)
T ss_dssp CCSSCCCSSCCCCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHTCSCCEECSSCCSHHHHHHHTTTCCCEECCCTTTHHHH
T ss_pred cccccccccCceEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHCCCEEEeccCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCeEccccccccCCcCCCCCCcccceeEEEEEEcC--eeEEEEEcCCCCCeeEEeC
Q 016953 323 AKATGATMVSTFADMEGEETFDSSLLGSADEVVEERVAD--DDVIMIKGTKTTSAVCGLI 380 (380)
Q Consensus 323 a~~tGa~ii~s~~~l~~~~~~~~~~lG~~~~v~~~~ig~--~~~~~f~g~~~~~~~t~l~ 380 (380)
|++|||+++++++++ +++++|+|+.|+++++|+ ++|++|+||+++++|||+|
T Consensus 355 a~~TGa~iis~l~~l------~~~~LG~a~~v~~~~ig~~~~~~~~i~g~~~~~~~TIll 408 (562)
T 3p9d_E 355 AISTNGRIVPRFQDL------SKDKLGTCSRIYEQEFGTTKDRMLIIEQSKETKTVTCFV 408 (562)
T ss_dssp HHHHCCCEEESSSCC------CTTSCEECSCEEEECCSSSSCCEEEECCCSCCSCCEEEE
T ss_pred HHHhCCEEEeccccC------CHHHCCcceEEEEEEeccCCceEEEEecCCCCCeEEEEE
Confidence 999999999998764 677999999999999995 8999999999999999985
No 18
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f*
Probab=100.00 E-value=2.9e-78 Score=615.66 Aligned_cols=360 Identities=24% Similarity=0.446 Sum_probs=340.3
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhcC
Q 016953 11 LGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVG 90 (380)
Q Consensus 11 ~~~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~G 90 (380)
..++.+|.+++.+|+.||+.|++++|+||||+||+|||+++.|+++|||||+|||++|+++||+++|++++|++||+++|
T Consensus 9 ~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~akll~e~a~~qd~e~G 88 (546)
T 3p9d_F 9 KAESLRRDAALKVNVTSAEGLQSVLETNLGPKGTLKMLVDGAGNIKLTKDGKVLLTEMQIQSPTAVLIARAAAAQDEITG 88 (546)
T ss_dssp TEEEEEHHHHHHHHHHHHTHHHHHHTTTSSTTCCEEEEECTTSCEEEECCHHHHHHTSCCCCHHHHHHHHHHHHHHHHCS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCEEEECCHHHHHHHccCcCHHHHHHHHHHHHHHHHhC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccc--cCHHHHHHHHHHhhccCcCCCch
Q 016953 91 DGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEK--LGKDSLVNCAKTSMSSKLIGGDS 168 (380)
Q Consensus 91 DGttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~--~~~~~l~~va~t~l~sK~~~~~~ 168 (380)
|||||++|||++||+++.+++.+|+||+.|++||+.|++.++++|+++ +++++. .+++.|.++|+|+++||+.+.+.
T Consensus 89 DGTTtvvVLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~-a~~v~~~~~~~~~L~~vA~tsl~sKi~~~~~ 167 (546)
T 3p9d_F 89 DGTTTVVCLVGELLRQAHRFIQEGVHPRIITDGFEIARKESMKFLDEF-KISKTNLSNDREFLLQVARSSLLTKVDADLT 167 (546)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTTTBCHHHHHHHHHHHHHHHHHHHHHH-CCCCSSSSTTCHHHHHHHHHHTCSTTHHHHC
T ss_pred CCcccHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHh-hccccccccCHHHHHHHHHHHhCCCcchhHH
Confidence 999999999999999999999999999999999999999999999997 888753 47889999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeEeeEEEcccccCCCCCccccCceEEEEEecccccc
Q 016953 169 DFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTK 248 (380)
Q Consensus 169 ~~ls~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~~kIll~~~~L~~~~ 248 (380)
++|++++++|+..+.+.. + ..+|+++|++++++|++..||++++|++|++++.+++||++++||||++++|+|++++
T Consensus 168 d~la~l~vdaV~~V~~~~-~--~~~dl~~I~i~ki~Gg~~~ds~lv~G~v~dk~~~~~~m~~~~en~kIll~~~~Le~~k 244 (546)
T 3p9d_F 168 EVLTPIVTDAVLSVYDAQ-A--DNLDLHMVEIMQMQHLSPKDTTFIKGLVLDHGGRHPDMPTRVKNAYVLILNVSLEYEK 244 (546)
T ss_dssp SSHHHHHHHHHHHTHHHH-H--TTCCGGGEEEECCCCSCTTTCCCCSSCEESCCCCSSSSCSSBCSCCCCEECCCSSSCC
T ss_pred HHHHHHHHHhheEeecCC-C--CcccchheEEEEecCCCccccEEEeeEEEecccccccCcceecCceEEEecCcccccc
Confidence 999999999999986422 1 1477889999999999999999999999999999999999999999999999999999
Q ss_pred cccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCC----------CeEEEeCCCCCHHHHHHHHHcCceEEeeCChhH
Q 016953 249 MQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAG----------ANVILTTKGIDDMALKYFVEAGAIAVRRVRKED 318 (380)
Q Consensus 249 ~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~g----------v~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~ 318 (380)
++.++++.++++++++.+.++|++++++.+++|...+ ++||+++++|++.|++||.++||++++++++++
T Consensus 245 ~e~~~~~~i~~~~~~~~~~~~E~~~~~~~v~~I~~~~~~v~~~~~g~~~vIi~~k~I~~~Al~~L~~~gI~~vr~v~~~~ 324 (546)
T 3p9d_F 245 TEVNSGFFYSSADQRDKLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGIDPMSLDVFAKHNILALRRAKRRN 324 (546)
T ss_dssp CSSCBCCCCCSSSCHHHHHHHHHHHHHHHHHHHHHCC-----------CEEEESSCCCHHHHHHHTTTTCEEECCCCHHH
T ss_pred cccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceEEEecCcCcHHHHHHHHHCCCeeEecCCHHH
Confidence 9999999999999999999999999999999998764 349999999999999999999999999999999
Q ss_pred HHHHHHHhCCeEccccccccCCcCCCCCCcccceeEEEEEEcCeeEEEEEcCCCCCeeEEeC
Q 016953 319 MRHIAKATGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAVCGLI 380 (380)
Q Consensus 319 l~~la~~tGa~ii~s~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g~~~~~~~t~l~ 380 (380)
|+|||++|||+++++++++ +++++|+|+.|+++++|+++|++|+||+++.+|||+|
T Consensus 325 leria~~tGa~ii~~l~~l------~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~~~~tI~l 380 (546)
T 3p9d_F 325 MERLQLVTGGEAQNSVEDL------SPQILGFSGLVYQETIGEEKFTYVTENTDPKSCTILI 380 (546)
T ss_dssp HHHHHHTTTBCCCCCCSSC------STTCCBCCCCBCBCCCSSCCCEECSSCSCCSCEEEEC
T ss_pred HHHHHHHhCCEEecchhhC------CHhHCCcccEEEEEEecCceEEEEecCCCCceEEEEE
Confidence 9999999999999998764 6679999999999999999999999999999999986
No 19
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B
Probab=100.00 E-value=5.9e-78 Score=614.40 Aligned_cols=357 Identities=29% Similarity=0.469 Sum_probs=331.1
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhcCC
Q 016953 12 GERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGD 91 (380)
Q Consensus 12 ~~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GD 91 (380)
.++.+|.+++.+|+.||..+++++++||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++|++++||
T Consensus 12 ~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~~~hP~Akll~e~a~~qd~e~GD 91 (590)
T 3p9d_C 12 QERTTGRQAQISNITAAKAVADVIRTCLGPKAMLKMLLDPMGGLVLTNDGHAILREIDVAHPAAKSMLELSRTQDEEVGD 91 (590)
T ss_dssp CCBCTTHHHHHTTHHHHHHHHHHSTTTCSSSCCCCEEECTTTCCBCCCCHHHHHHHSCCCCHHHHTHHHHTTTHHHHCSS
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEECCHHHHHHHhhCCCHHHHHHHHHHHhhhhhhCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHH-HHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccccCHHHHHHHHHHhhccCcCCCchHH
Q 016953 92 GTTSVVIVAAELLKRANDL-VRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDF 170 (380)
Q Consensus 92 Gttt~vlL~~~ll~~~~~l-i~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~~~~~l~~va~t~l~sK~~~~~~~~ 170 (380)
||||++|||++||+++.++ +.+|+||+.|++||+.|++.++++|+++ +++++..+++.|.++|+|+++||+.++|+++
T Consensus 92 GTTtvvVLA~eLL~~a~~l~l~~GihP~~I~~G~~~A~~~a~~~L~~~-s~~v~~~~~e~L~~vA~tslsSK~~~~~~~~ 170 (590)
T 3p9d_C 92 GTTTVIILAGEILAQCAPYLIEKNIHPVIIIQALKKALTDALEVIKQV-SKPVDVENDAAMKKLIQASIGTKYVIHWSEK 170 (590)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHH-CCTTTTCCTHHHHHHHTTTSTTSTTGGGHHH
T ss_pred CccchHHHHHHHHhhhHHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHH-hhccccCCHHHHHHHHHHHHhcccccccHHH
Confidence 9999999999999999999 9999999999999999999999999997 8998876789999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccCCCC-----ccccCC-ceeEEecCCCCcccceeEeeEEEcccccCCCCCccccCceEEEEEecc
Q 016953 171 FANLVVEAVQAVKMTNQRGE-----VKYPIK-GINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNL 244 (380)
Q Consensus 171 ls~lv~~av~~~~~~~~~g~-----~~~~~~-~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~~kIll~~~~L 244 (380)
|++|+++|+.++.+.+..+. +.+|++ +|+|.+++|+++.||++++|++|++++.+++||++++||||++++|+|
T Consensus 171 i~~livdAv~~V~~~~~~~~~~~~~~~vDl~~~I~I~ki~Ggs~~ds~lv~Gmvfdk~~~~~~m~~~~en~kIll~d~~L 250 (590)
T 3p9d_C 171 MCELALDAVKTVRKDLGQTVEGEPNFEIDIKRYVRVEKIPGGDVLDSRVLKGVLLNKDVVHPKMSRHIENPRVVLLDCPL 250 (590)
T ss_dssp HHHHHHHHHTTSTTCC-----------CCCSSSSCEEEESSCCGGGCBCCSSEEECCCCSCTTSCSCEESCCEECCCCCC
T ss_pred HHHHHHHHHHHhcccccCccccccccccchhhceEEEEecCCCcccceeeeEEEEecccCCCCCcceeeeeEEEEEcccc
Confidence 99999999999854221110 134444 799999999999999999999999999999999999999999999999
Q ss_pred cccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHH
Q 016953 245 QKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAK 324 (380)
Q Consensus 245 ~~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~ 324 (380)
++++++.++++.++++++++.+.+.|++++++++++|++.|++|||++++|++.|++||.++||++++++++.+|+|||+
T Consensus 251 e~~K~e~~~~v~Is~~~~l~~il~~E~~~l~~~vekI~~~g~~vII~e~~I~d~Al~~L~k~~I~av~~~~k~~le~ia~ 330 (590)
T 3p9d_C 251 EYKKGESQTNIEIEKEEDWNRILQIEEEQVQLMCEQILAVRPTLVITEKGVSDLAQHYLLKGGCSVLRRVKKSDNNRIAR 330 (590)
T ss_dssp SCCCCTTTEECCBCSTTHHHHHHHHHHHHHHHHHHHHHTTCCSEECCSSCCCTHHHHHHHHTTCCCCCCCCHHHHHHHHH
T ss_pred cccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCcCHHHHHHHHhccceeeccCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCeEccccccccCCcCCCCCCccc-ceeEEEEEEcCeeEEEEEcCCCCCe
Q 016953 325 ATGATMVSTFADMEGEETFDSSLLGS-ADEVVEERVADDDVIMIKGTKTTSA 375 (380)
Q Consensus 325 ~tGa~ii~s~~~l~~~~~~~~~~lG~-~~~v~~~~ig~~~~~~f~g~~~~~~ 375 (380)
+|||+++++++++ +++++|+ |+.|++.++|+++|++|+||+++.+
T Consensus 331 ~TGa~iis~l~~~------~~~~LG~~a~~v~~~~ig~d~~~~i~g~~~~~~ 376 (590)
T 3p9d_C 331 VTGATIVNRVEDL------KESDVGTNCGLFKVEMIGDEYFSFLDNCKEPGS 376 (590)
T ss_dssp HHTCCCCSCSTTC------CTTSCBCCCSEEECCEETTEECEEECC------
T ss_pred HhCCceeecccCC------CHHHhCCcCCEEEEEEEcCcEEEEEeCCCCccc
Confidence 9999999998764 6779999 9999999999999999999999887
No 20
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=1e-75 Score=593.12 Aligned_cols=354 Identities=28% Similarity=0.439 Sum_probs=333.4
Q ss_pred ccccc-HHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhcCC
Q 016953 13 ERQAG-QDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGD 91 (380)
Q Consensus 13 ~~~~~-~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GD 91 (380)
++.+| .+++.+|+.||..+++++|+||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++|++++||
T Consensus 4 ~~~~g~~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~~~GD 83 (512)
T 3iyg_Q 4 KHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGD 83 (512)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHcccCCHHHHHHHHHHHHhhhhhCC
Confidence 46789 79999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcc--cccccCHHHHHHHHHHhhccCcCCCchH
Q 016953 92 GTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAV--KVEKLGKDSLVNCAKTSMSSKLIGGDSD 169 (380)
Q Consensus 92 Gttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~--~v~~~~~~~l~~va~t~l~sK~~~~~~~ 169 (380)
||||++|||++||+++.+++.+|+||+.|++||+.|++.++++|+++ +. +.+..+++.|.++|+|+++||+.+ +++
T Consensus 84 GTTtvvVLA~~Ll~~a~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~-~~~~~~~~~~~~~l~~va~tsl~sK~~~-~~~ 161 (512)
T 3iyg_Q 84 GTNFVLVFAGALLELAEELLRLGLSVSEVIEGYEIACKKAHEILPDL-VCCSAKNLRDVDEVSSLLHTSVMSKQYG-NEV 161 (512)
T ss_pred ChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHh-hcccCCCCCCHHHHHHHHHHHhCCCCcc-chH
Confidence 99999999999999999999999999999999999999999999986 43 334447899999999999999876 689
Q ss_pred HHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeEeeEEEcccccCCCCCccccCceEEEEEeccccccc
Q 016953 170 FFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKM 249 (380)
Q Consensus 170 ~ls~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~~kIll~~~~L~~~~~ 249 (380)
+|++|+++|+.++.+. +| .+++++|+|.|..|+++.||++++|++|++++.+ ||++.+||||+++++|+++.++
T Consensus 162 ~i~~livdAv~~V~~~--~~--~i~v~~I~i~k~~Ggs~~ds~lv~G~~~dk~~~~--~~~~~~n~kI~ll~~~le~~~~ 235 (512)
T 3iyg_Q 162 FLAKLIAQACVSIFPD--SG--HFNVDNIRVCKILGSGVHSSSVLHGMVFKKETEG--DVTSVKDAKIAVYSCPFDGMIT 235 (512)
T ss_pred HHHHHHHHHHHHHhcc--CC--cccHhHeeEeeccCCCcccceEEeeEEEecCcCC--CCcccccCceEEEecccccccc
Confidence 9999999999998532 23 4677899999999999999999999999999876 9999999999999999999999
Q ss_pred ccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHhCCe
Q 016953 250 QLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGAT 329 (380)
Q Consensus 250 ~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa~ 329 (380)
+.++++.+++++++..+.++|++++++++++|++.|++||+++++|++.+++||.++||++++++++.+|+|||++|||+
T Consensus 236 e~k~~v~Is~~~~l~~~~~~E~~~l~~~v~~I~~~g~~vvi~~~~I~~la~~~l~k~~I~av~~~~~~dle~ia~~tGa~ 315 (512)
T 3iyg_Q 236 ETKGTVLIKSAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGRVADMALHYANKYNIMLVRLNSKWDLRRLCKTVGAT 315 (512)
T ss_pred cccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCccHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccccccccCCcCCCCCCcccceeEEEEEEcCeeEEEEEcCCC-CCeeEEeC
Q 016953 330 MVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKT-TSAVCGLI 380 (380)
Q Consensus 330 ii~s~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g~~~-~~~~t~l~ 380 (380)
++++++++ +++++|+|+.|+++++|+++|++|+||+. +.+|||++
T Consensus 316 iis~l~~~------~~~~LG~a~~v~~~~~g~~~~~~~~~~~~~~~~~tI~l 361 (512)
T 3iyg_Q 316 ALPRLNPP------VLEEMGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIVL 361 (512)
T ss_pred EecccccC------CHHHCCcccEEEEEEeCCeEEEEEEcccCCCceEEEEE
Confidence 99998764 56789999999999999999999999974 78999985
No 21
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b*
Probab=100.00 E-value=2.3e-76 Score=599.86 Aligned_cols=356 Identities=33% Similarity=0.511 Sum_probs=335.6
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeec-CCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhh
Q 016953 10 ILGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVD-DIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDRE 88 (380)
Q Consensus 10 ~~~~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~-~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~ 88 (380)
...++.+|.+++.+|+.||..+++++|+||||+||+|||++ +.|+++|||||+|||++|+++||+|+|++++|++||++
T Consensus 8 ~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~~G~~~iTnDG~tIlk~i~~~hP~Akll~e~a~~qd~~ 87 (527)
T 3p9d_B 8 DQVTEERAENARLSAFVGAIAVGDLVKSTLGPKGMDKLLQSASSNTCMVTNDGATILKSIPLDNPAAKVLVNISKVQDDE 87 (527)
T ss_dssp SCEEEEESHHHHHHHHHHHHHHHHHHHSCSSSSCCEEEEECTTTCCEECCCCHHHHHHTCCCCCHHHHHHHHHHHHHHHH
T ss_pred CcchhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEecCCCCeEEeCCHHHHHHHhccCCHHHHHHHHHHHHhHhh
Confidence 34467899999999999999999999999999999999999 89999999999999999999999999999999999999
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHHHHHhhhcccccccC---HHHHHHHHHHhhccCcC
Q 016953 89 VGDGTTSVVIVAAELLKRANDLVRN-KIHPTSIISGYRLAMREACKYVNEKLAVKVEKLG---KDSLVNCAKTSMSSKLI 164 (380)
Q Consensus 89 ~GDGttt~vlL~~~ll~~~~~li~~-gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~~---~~~l~~va~t~l~sK~~ 164 (380)
+||||||++|||++||+++.+++.+ |+||+.|++||+.|++.++++|+++ +++++..+ ++.|.++|+|+++||+.
T Consensus 88 ~GDGTTtavVLA~~Ll~ea~~lv~~~GihP~~I~~G~~~A~~~a~~~L~~~-s~~v~~~~~~~~~~l~~vA~tSl~sK~~ 166 (527)
T 3p9d_B 88 VGDGTTSVTVLSAELLREAEKLIDQSKIHPQTIIEGYRLASAAALDALTKA-AVDNSHDKTMFREDLIHIAKTTLSSKIL 166 (527)
T ss_dssp TCSCTTTTTHHHHHHHHHHHHHTC---CCHHHHHHHHHHHHHHHHHHHHHT-CBCCCCCHHHHHHHHHHHHHHHHTTSGG
T ss_pred hCCcHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh-CccCCCcchhhHHHHHHHHHhccccCcc
Confidence 9999999999999999999999999 9999999999999999999999997 88886422 78899999999999999
Q ss_pred CCchHHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeEeeEEEcccccCCCCCccccCceEEEEEecc
Q 016953 165 GGDSDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNL 244 (380)
Q Consensus 165 ~~~~~~ls~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~~kIll~~~~L 244 (380)
+.|+++|++|+++|+.++. +++ |++.|+|.++.|+++.||++++|++|++++.+++ |++++||||++++|+|
T Consensus 167 ~~~~~~i~~li~dAv~~V~---~~~----~~~~I~V~k~~gg~~~ds~lv~G~~~dk~~~~~~-p~~~~n~kIlll~~~l 238 (527)
T 3p9d_B 167 SQDKDHFAELATNAILRLK---GST----NLEHIQIIKILGGKLSDSFLDEGFILAKKFGNNQ-PKRIENAKILIANTTL 238 (527)
T ss_dssp GGGHHHHHHHHHHHHHTTC---TTC----CTTSSCCCBCCCSSSSCCCEESSCCCSCCCSSSC-CSCCSSCEEEEECSCS
T ss_pred cchHHHHHHHHHHHHHHhc---ccC----CcceEEEEEcCCCCccccEEEEeEEEecccCCCC-CeeeecceEEEecccc
Confidence 9999999999999999984 333 4578899999999999999999999999999987 8899999999999999
Q ss_pred cccccc-cceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHH
Q 016953 245 QKTKMQ-LGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIA 323 (380)
Q Consensus 245 ~~~~~~-~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la 323 (380)
++++++ .+.++.+++++++..+.++|++++++++++|++.|++||+++++|++.+++||.++||++++++++.+|+|+|
T Consensus 239 e~~k~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~l~~I~~~g~~vvi~~~~I~~~al~~L~~~~i~av~~~~~~dle~ia 318 (527)
T 3p9d_B 239 DTDKVKIFGTKFKVDSTAKLAQLEKAEREKMKNKIAKISKFGINTFINRQLIYDYPEQLFTDLGINSIEHADFEGVERLA 318 (527)
T ss_dssp SCCCCSSCCCBCCCCHHHHHHHHHHHHHHHHHHHHHHHTTTCCBEEESSCCCTTTHHHHHHHTCBCCCCCCHHHHHHHHH
T ss_pred ccccccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHCCCEEEecCCHHHHHHHH
Confidence 999999 5899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeEccccccccCCcCCCCCCcccceeEEEEEEcCeeEEEEEcCCCCCeeEEeC
Q 016953 324 KATGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTSAVCGLI 380 (380)
Q Consensus 324 ~~tGa~ii~s~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g~~~~~~~t~l~ 380 (380)
++|||+++++++++ ++.++|+|+.|+++++|+++|++|+||+++.+|||+|
T Consensus 319 ~~tGa~iv~~~~~~------~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~~~~tI~l 369 (527)
T 3p9d_B 319 LVTGGEVVSTFDEP------SKCKLGECDVIEEIMLGEQPFLKFSGCKAGEACTIVL 369 (527)
T ss_dssp HHTCCCCCSTTSCC------TTSCEECSBCCBCCCSSSCCBCCBCSSCCSCCEECBC
T ss_pred HHhCCEEecchhhC------CHHHCCCCcEEEEEEecceEEEEEECCCCCCEEEEEE
Confidence 99999999998764 6778999999999999999999999999999999986
No 22
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii}
Probab=100.00 E-value=5.4e-71 Score=556.75 Aligned_cols=326 Identities=34% Similarity=0.556 Sum_probs=245.8
Q ss_pred eeecCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhcCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 016953 47 MLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRL 126 (380)
Q Consensus 47 ~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDGttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~ 126 (380)
||+++.|+++|||||+|||++|+++||+|+|++++|++||+++||||||++|||++||+++.+++.+|+||+.|++||+.
T Consensus 1 mlv~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~GDGTTtvvvLa~~LL~~a~~ll~~GihP~~I~~G~~~ 80 (500)
T 3aq1_B 1 MLVDSMGDIVITNDGATILKEMDIQHPAAKMIVEVSKTQDAEVGDGTTTAAVLSGELLSKAEELIMKGVHSTIISEGYRH 80 (500)
T ss_dssp ------------------------------------------CCHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CccCCCCCeEEECcHHHHHHhCcCCCHHHHHHHHHHHhhhhhhCCChHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcccccccCHHHHHHHHHHhhccCcCCCchHHHHHHHHHHHHHhhcccCCCCcccc-CCceeEEecCC
Q 016953 127 AMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGDSDFFANLVVEAVQAVKMTNQRGEVKYP-IKGINILKAHG 205 (380)
Q Consensus 127 a~~~~~~~l~~~~s~~v~~~~~~~l~~va~t~l~sK~~~~~~~~ls~lv~~av~~~~~~~~~g~~~~~-~~~I~i~k~~G 205 (380)
|++.++++|+++ +++++..+++.|.++|+|+|+||+.++|+++|++|+++|+.++.+. .+|...+| .++|+|.+++|
T Consensus 81 A~~~a~~~L~~~-s~~v~~~d~~~l~~va~tsl~sKi~~~~~~~i~~li~dAv~~v~~~-~~g~~~~di~~~I~V~k~~G 158 (500)
T 3aq1_B 81 AAEKCREILETI-TIAISPDDEAALIKIAGTAITGKGAEAYKEKLSALTVKAVRSIVEE-EEDGLKVNVLENIKIEKRAG 158 (500)
T ss_dssp HHHHHHHHHHHH-CEECCTTCHHHHHHHHHTTCCSSSTTSSHHHHHHHHHHHHTTSEEC-CSSSCEECHHHHEEEEEEES
T ss_pred HHHHHHHHHHHh-cCCCCCCcHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHhccc-ccCCccccccccEEEEEecC
Confidence 999999999997 9998766789999999999999999999999999999999998532 12444677 78999999999
Q ss_pred CCcccceeEeeEEEcccccCCCCCccccCceEEEEEecccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 016953 206 KSARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAG 285 (380)
Q Consensus 206 ~~~~dS~li~Giv~~~~~~~~~~~~~~~~~kIll~~~~L~~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~g 285 (380)
+++.||++++|++|++++.|++||++++||||++++++|++++++.++++.++++++++.+.++|++++++++++|++.|
T Consensus 159 ~~~~ds~lv~G~v~dk~~~~~~m~~~i~n~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g 238 (500)
T 3aq1_B 159 GSIDDSELIDGLVIDKERSHPNMPEKVENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKVIASG 238 (500)
T ss_dssp SCGGGCEEESEEEESCCCSSTTSCSEEEEEEEEEESSCBCC-------------------------CHHHHHHHHHHTTC
T ss_pred CCccceEEEeeeEEeecCCCCCCcccccCCEEEEEeCCccccccccceeEeeCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHhCCeEccccccccCCcCCCCCCcccceeEEEEEEcCeeEE
Q 016953 286 ANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVI 365 (380)
Q Consensus 286 v~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa~ii~s~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~ 365 (380)
++|||++++|++.|++||.++||++++++++++|+|||++|||+++++++++ +++++|+|+.|+++++|+++|+
T Consensus 239 ~~lvi~~~~I~~~al~~L~~~~I~av~~~~k~~le~ia~~tGa~iis~l~~~------~~~~LG~a~~v~~~~ig~~~~~ 312 (500)
T 3aq1_B 239 ANVVFCQKGIDDMAQYYIEKAGIYAVRRVKKSDLKRLSKVTGATIIQDLDQI------TTEDVGTAGLVEEKEVRGGKMT 312 (500)
T ss_dssp CSEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHCCCCBSCTTCC------CSTTCEEEEEEEEEECSSSEEE
T ss_pred cCEEEECCCcCHHHHHHHHHCCEEEEEeCCHHHHHHHHHHhCCeEecccccC------CHhHCCCceEEEEEEecCeEEE
Confidence 9999999999999999999999999999999999999999999999998764 6678999999999999999999
Q ss_pred EEEcCCCCCeeEEeC
Q 016953 366 MIKGTKTTSAVCGLI 380 (380)
Q Consensus 366 ~f~g~~~~~~~t~l~ 380 (380)
+|+||+++++|||+|
T Consensus 313 ~~~g~~~~~~~TI~l 327 (500)
T 3aq1_B 313 YVTGCQNSKAVTVLL 327 (500)
T ss_dssp EEEEETTCCCEEEEE
T ss_pred EEECCCCCceEEEEe
Confidence 999999999999985
No 23
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ...
Probab=100.00 E-value=8e-62 Score=492.20 Aligned_cols=313 Identities=24% Similarity=0.346 Sum_probs=280.2
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccCh----HHHHHHHHHHHhhh
Q 016953 12 GERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHP----AAKVLVELAELQDR 87 (380)
Q Consensus 12 ~~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP----~~~ll~~~~~~~~~ 87 (380)
++..+|.++|.+|+.||..+++++++||||+||+|||+++.|+++|||||+||+++|+++|| .|+|+++++++|++
T Consensus 3 k~~~~g~~ar~~~i~~~~~la~~vkttLGPkG~~kmi~~~~G~~~ITnDG~tIlk~i~~~hp~en~~Akll~e~a~~qd~ 82 (547)
T 1kp8_A 3 KDVKFGNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKAND 82 (547)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHHTTCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEEcCHHHHHHHccccChhhhHHHHHHHHHHHhhcc
Confidence 35678999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccccCHHHHHHHHHHhhccCcCCCc
Q 016953 88 EVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGD 167 (380)
Q Consensus 88 ~~GDGttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~~~~~l~~va~t~l~sK~~~~~ 167 (380)
++||||||++|||++||+++.+++.+|+||+.|++||+.|++.++++|+++ +++++ +++.|.++|+++++ +
T Consensus 83 e~GDGTTtvvVLA~~Ll~ea~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~-s~~v~--~~e~l~~vA~iS~~------~ 153 (547)
T 1kp8_A 83 AAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKAL-SVPCS--DSKAIAQVGTISAN------S 153 (547)
T ss_dssp HHSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH-CBCCC--SHHHHHHHHHHHTT------S
T ss_pred ccCCCcchhHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHh-CcCCC--CHHHHHHHHHHhcc------c
Confidence 999999999999999999999999999999999999999999999999997 88886 68999999998863 5
Q ss_pred hHHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccc-eeEeeEEEcccccCCC-------CCccccCceEEE
Q 016953 168 SDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDS-YFLNGYALNAFRAAQG-------MPLRVAPAKIAC 239 (380)
Q Consensus 168 ~~~ls~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS-~li~Giv~~~~~~~~~-------~~~~~~~~kIll 239 (380)
++++++++++|+.++. ++| .|+|. .|+++++| ++++|++|++++.+++ |++.++||||++
T Consensus 154 ~~~i~~liadAv~~V~---~dg-------~I~Ve--~G~~~~ds~~lveG~~fdkg~~~p~~vt~~~~m~~~lenp~Ill 221 (547)
T 1kp8_A 154 DETVGKLIAEAMDKVG---KEG-------VITVE--DGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILL 221 (547)
T ss_dssp CHHHHHHHHHHHHHHC---TTS-------EEEEE--CCSSSSCEEEEESCEEESCCBSSTTCCSBTTTTBEEEESCEEEC
T ss_pred hhHHHHHHHHHHHHhC---cCC-------cEEEE--eCCccccccEEEecEEEecCccccccccCcccCceEecCceEEE
Confidence 8999999999999983 333 24443 89999999 9999999999999886 455699999999
Q ss_pred EEecccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcC------ceEEe-
Q 016953 240 LDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAG------AIAVR- 312 (380)
Q Consensus 240 ~~~~L~~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~------I~vv~- 312 (380)
++++++ ++++ +.++++++.+.|++|||++++|++.|++||..|+ |++|+
T Consensus 222 ~d~~Is-------------~~~~-----------l~~~le~i~~~g~~lvIi~~~I~~~Al~~L~~n~irg~~~v~aVk~ 277 (547)
T 1kp8_A 222 ADKKIS-------------NIRE-----------MLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKA 277 (547)
T ss_dssp EESEEC-------------CGGG-----------THHHHHHHHGGGCCEEEEESEECHHHHHHHHHHGGGTSSCEEEEEC
T ss_pred EcCcCC-------------CHHH-----------HHHHHHHHHhcCCCEEEECCCcCHHHHHHHHhcccccceeEEEEec
Confidence 999754 3443 3567889999999999999999999999999964 57787
Q ss_pred ----eCChhHHHHHHHHhCCeEccccccccCCcCCCCCCcccceeEEEEEEcCeeEEEEEcCCCC
Q 016953 313 ----RVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTT 373 (380)
Q Consensus 313 ----~v~~~~l~~la~~tGa~ii~s~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g~~~~ 373 (380)
++++++|+|||++|||+++++...++. ++++++++|+|+.|++ ++++|++|+||+++
T Consensus 278 ~~~~~~rk~~le~ia~~tG~~ii~~~~g~~l-~~~~~~~LG~a~~v~~---~~~~~~~i~g~~~~ 338 (547)
T 1kp8_A 278 PGFGDRRKAMLQDIATLTGGTVISEEIGMEL-EKATLEDLGQAKRVVI---NKDTTTIIDGVGEE 338 (547)
T ss_dssp SSCHHHHHHHHHHHHHHHTCCCEEGGGTCCS-TTCCTTTSEEEEEEEE---CSSCEEEEEECCCH
T ss_pred cccccccHHHHHHHHHHhCCeEecccccCCc-ccCCHHHCCceeEEEE---ccceEEEEcCCCCH
Confidence 889999999999999999997433332 3467789999999984 68999999999976
No 24
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*
Probab=100.00 E-value=2.5e-61 Score=489.10 Aligned_cols=312 Identities=26% Similarity=0.360 Sum_probs=278.4
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccCh----HHHHHHHHHHHhhh
Q 016953 12 GERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHP----AAKVLVELAELQDR 87 (380)
Q Consensus 12 ~~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP----~~~ll~~~~~~~~~ 87 (380)
++..+|.++|.+|+.||..+++++++||||+||+|||+++.|+++|||||+||+++|+++|| .|+|++++|++||+
T Consensus 3 k~~~~g~~ar~~~~~~~~~la~~vkttLGPkG~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~en~~Akll~e~a~~qd~ 82 (543)
T 1we3_A 3 KILVFDEAARRALERGVNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVELEDHLENIGAQLLKEVASKTND 82 (543)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHGGGCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEEcCHHHHHHHcccCChHHhHHHHHHHHHHHhhhe
Confidence 35678999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccccCHHHHHHHHHHhhccCcCCCc
Q 016953 88 EVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGD 167 (380)
Q Consensus 88 ~~GDGttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~~~~~l~~va~t~l~sK~~~~~ 167 (380)
++||||||++|||++||+++.+++.+|+||+.|++||+.|++.++++|+++ +++++ +++.|.++|+++++
T Consensus 83 e~GDGTTtvvVLA~~LL~ea~~li~~GihP~~I~~G~~~A~~~a~~~L~~~-s~~v~--~~~~l~~vA~iS~~------- 152 (543)
T 1we3_A 83 VAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEKAVEAAVEKIKAL-AIPVE--DRKAIEEVATISAN------- 152 (543)
T ss_dssp HHSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT-CBCCC--SHHHHHHHHHHHHT-------
T ss_pred ecCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHh-cccCC--CHHHHHHhhhhhcC-------
Confidence 999999999999999999999999999999999999999999999999997 88886 68899999998863
Q ss_pred hHHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccc-eeEeeEEEcccccCCC-------CCccccCceEEE
Q 016953 168 SDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDS-YFLNGYALNAFRAAQG-------MPLRVAPAKIAC 239 (380)
Q Consensus 168 ~~~ls~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS-~li~Giv~~~~~~~~~-------~~~~~~~~kIll 239 (380)
++++++++++|+.++. ++| .|.|. .|+++++| ++++|++|++++.+++ |++.++||||++
T Consensus 153 ~~~i~~li~dAv~~V~---~~g-------~I~Ve--~G~~~~ds~~lv~G~~~dkg~~~p~~vt~~~~m~~~~en~~Ill 220 (543)
T 1we3_A 153 DPEVGKLIADAMEKVG---KEG-------IITVE--ESKSLETELKFVEGYQFDKGYISPYFVTNPETMEAVLEDAFILI 220 (543)
T ss_dssp CHHHHHHHHHHHHTTC---TTS-------EEEEE--ECSSSSCEEEEECSEEESCCBSSGGGCSBTTTTBCCEEEEEEEE
T ss_pred CHHHHHHHHHHHHHhC---cCC-------cEEEe--cCCccccceEEEcCEEEecCccccccccCcccCceeecCceEEE
Confidence 6899999999999883 333 24443 89999998 9999999999999875 566799999999
Q ss_pred EEecccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHc------CceEEe-
Q 016953 240 LDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEA------GAIAVR- 312 (380)
Q Consensus 240 ~~~~L~~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~------~I~vv~- 312 (380)
++++++ ++++ +.++++++.+.|++|||++++|++.|++||..| +|++|+
T Consensus 221 ~d~~Is-------------~~~~-----------l~~~le~i~~~g~~lvii~~~I~~~Al~~L~~n~irg~~~v~aVk~ 276 (543)
T 1we3_A 221 VEKKVS-------------NVRE-----------LLPILEQVAQTGKPLLIIAEDVEGEALATLVVNKLRGTLSVAAVKA 276 (543)
T ss_dssp ESSCBC-------------CHHH-----------HHHHHHHHHTTTCCEEEEESCBCHHHHHHHHHHHHHTSCCEEEEEC
T ss_pred ECCCcC-------------CHHH-----------HHHHHHHHHhcCCCEEEEcCCccHHHHHHHHHhccccceeEEEEec
Confidence 999753 3433 457789999999999999999999999999996 568888
Q ss_pred ----eCChhHHHHHHHHhCCeEccccccccCCcCCCCCCcccceeEEEEEEcCeeEEEEEcCCCC
Q 016953 313 ----RVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTT 373 (380)
Q Consensus 313 ----~v~~~~l~~la~~tGa~ii~s~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g~~~~ 373 (380)
++++++|+|||++|||+++++..+++. ++++++++|+|+.|++ +++++++|+||+++
T Consensus 277 ~~~~~~~~~~le~ia~~tGa~ii~~~~g~~l-~~~~~~~LG~a~~v~~---~~~~~~~i~g~~~~ 337 (543)
T 1we3_A 277 PGFGDRRKEMLKDIAAVTGGTVISEELGFKL-ENATLSMLGRAERVRI---TKDETTIVGGKGKK 337 (543)
T ss_dssp SSSHHHHHHHHHHHHHHHCCCCBCTTTTCCG-GGCCGGGCEEEEEEEE---CSSCEEEEEECCCH
T ss_pred cchhhhhHHHHHHHHHHhCCceeeccccCCc-ccCCHHHCCCceEEEE---EcCEEEEEcCCCCH
Confidence 789999999999999999997333322 3457789999999984 68999999999975
No 25
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1
Probab=100.00 E-value=6e-62 Score=493.41 Aligned_cols=313 Identities=22% Similarity=0.329 Sum_probs=251.5
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccCh----HHHHHHHHHHHhhh
Q 016953 12 GERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHP----AAKVLVELAELQDR 87 (380)
Q Consensus 12 ~~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP----~~~ll~~~~~~~~~ 87 (380)
++..+|.++|.+|+.||..+++++++||||+||+|||+++.|+++|||||+||+++|+++|| .|+|++++|++|++
T Consensus 4 k~~~~g~~ar~~~i~~~~~la~~vkttLGPkG~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~en~~Akll~e~a~~qd~ 83 (545)
T 1iok_A 4 KEVKFNSDARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVREVASRTND 83 (545)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHGGGCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHGGG
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEECCCCCeEEeCCHHHHHHHhccCChhhHHHHHHHHHHHHhhcc
Confidence 45678999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccccCHHHHHHHHHHhhccCcCCCc
Q 016953 88 EVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGD 167 (380)
Q Consensus 88 ~~GDGttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~~~~~l~~va~t~l~sK~~~~~ 167 (380)
++||||||++|||++||+++.+++.+|+||+.|++||+.|++.++++|+++ +++++ +++.|.++|+++++ +
T Consensus 84 e~GDGTTtvvVLA~~Ll~ea~~li~~GihP~~I~~G~~~A~~~a~~~L~~~-s~~v~--~~e~l~~va~iS~~------~ 154 (545)
T 1iok_A 84 EAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVVEAIKSA-ARPVN--DSSEVAQVGTISAN------G 154 (545)
T ss_dssp GCSTHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTT-CBCCC--STTTTTHHHHHTTT------T
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHh-cccCC--CHHHHHHHHHhhcC------C
Confidence 999999999999999999999999999999999999999999999999997 88886 67889999998863 5
Q ss_pred hHHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccc-eeEeeEEEcccccCCC-------CCccccCceEEE
Q 016953 168 SDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDS-YFLNGYALNAFRAAQG-------MPLRVAPAKIAC 239 (380)
Q Consensus 168 ~~~ls~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS-~li~Giv~~~~~~~~~-------~~~~~~~~kIll 239 (380)
++++++++++|+.++. ++|. |+|. .|+++++| ++++|++|++++.+++ |+++++||||++
T Consensus 155 ~~~i~~li~dAv~~V~---~~g~-------I~Ve--~G~~~~ds~~lveG~~~dkg~~~p~~vt~~~~m~~~~en~~Ill 222 (545)
T 1iok_A 155 ESFIGQQIAEAMQRVG---NEGV-------ITVE--ENKGMETEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILL 222 (545)
T ss_dssp CHHHHHHHHHHHHHHC---TTSC-------CCCE--ECSSSCCEEEEECCEECSCCCSCGGGCCCSSSSCEEEEEEEEEE
T ss_pred chhHHHHHHHHHHHhc---cCCe-------EEEE--eCCccccceEEEecEEEecCccccccccCcccCceeecCCeEEE
Confidence 8999999999999983 3332 3333 79999999 9999999999999875 566799999999
Q ss_pred EEecccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcC------ceEEe-
Q 016953 240 LDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAG------AIAVR- 312 (380)
Q Consensus 240 ~~~~L~~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~------I~vv~- 312 (380)
++++++. +++ +.++++++.+.|++|||++++|++.|++||..|+ |++|+
T Consensus 223 ~d~~I~~-------------~~~-----------l~~~le~i~~~g~~lvIi~~~I~~~Al~~L~~n~irg~~~v~aVk~ 278 (545)
T 1iok_A 223 HEKKLSS-------------LQP-----------MVPLLESVIQSQKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKA 278 (545)
T ss_dssp CSSCBCC-------------CCC----------------------CCCCEEEESCBC-----------------CEEEEC
T ss_pred EcCCcCC-------------HHH-----------HHHHHHHHHhcCCCEEEECCCcCHHHHHHHHHccccccceeEEEec
Confidence 9998653 222 3467888999999999999999999999999964 57777
Q ss_pred ----eCChhHHHHHHHHhCCeEccccccccCCcCCCCCCcccceeEEEEEEcCeeEEEEEcCCCC
Q 016953 313 ----RVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTT 373 (380)
Q Consensus 313 ----~v~~~~l~~la~~tGa~ii~s~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g~~~~ 373 (380)
++++++|+|||++|||+++++-.+++. ++++++++|+|+.|++ ++++|++|+||+++
T Consensus 279 ~~~~~~~~~~le~ia~~tGa~ii~~~~~~~l-~~~~~~~LG~a~~v~~---~~~~~~~i~g~~~~ 339 (545)
T 1iok_A 279 PGFGDRRKAMLQDIAILTGGQVISEDLGMKL-ENVTIDMLGRAKKVSI---NKDNTTIVDGAGEK 339 (545)
T ss_dssp SCCTTHHHHHHHHHHHHHTC----------------CTTSEEEEEEEE---CSSCEEEESCCCCH
T ss_pred chhhhccHHHHHHHHHhcCCeeecccccCCc-ccCCHHHcCcCcEEEE---ecCEEEEEeCCCCH
Confidence 899999999999999999997211111 2356789999999984 67999999999975
No 26
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A
Probab=100.00 E-value=4e-61 Score=485.98 Aligned_cols=314 Identities=25% Similarity=0.349 Sum_probs=212.7
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcCCCCcccceeecCCCCeEEeccHHHHHhhccccChH----HHHHHHHHHHhhh
Q 016953 12 GERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPA----AKVLVELAELQDR 87 (380)
Q Consensus 12 ~~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~----~~ll~~~~~~~~~ 87 (380)
++..+|.++|.+|+.|+..+++++|+||||+||+|||+++.|+++|||||+|||++|+++||+ |+|++++|++|++
T Consensus 3 k~~~~~~~ar~~~~~~~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~v~hp~~n~gAkll~e~a~~qd~ 82 (546)
T 3rtk_A 3 KTIAYDEEARRGLERGLNALADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKTDD 82 (546)
T ss_dssp ----------------------------------------------------------CCCHHHHHHHHHHHHHHTSCC-
T ss_pred ceeeccHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEECcHHHHHHHccCCChhhhHHHHHHHHHHHhhhh
Confidence 346789999999999999999999999999999999999999999999999999999999999 8999999999999
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhcccccccCHHHHHHHHHHhhccCcCCCc
Q 016953 88 EVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSSKLIGGD 167 (380)
Q Consensus 88 ~~GDGttt~vlL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~s~~v~~~~~~~l~~va~t~l~sK~~~~~ 167 (380)
++||||||++|||++||+++.+++.+|+||+.|++||+.|++.++++|+++ +++++ +++.|.++|+++++
T Consensus 83 e~GDGTTtvvVLAgeLL~ea~~li~~GihP~~I~~G~~~A~~~a~e~L~~~-s~~v~--~~e~L~~vA~iS~~------- 152 (546)
T 3rtk_A 83 VAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKAVEKVTETLLKG-AKEVE--TKEQIAATAAISAG------- 152 (546)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHT-CBCCC--SHHHHHHHHHHHHT-------
T ss_pred hhCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHh-cccCC--ChHHHHhHeEEeCC-------
Confidence 999999999999999999999999999999999999999999999999997 88887 68899999998863
Q ss_pred hHHHHHHHHHHHHHhhcccCCCCccccCCceeEEecCCCCcccceeEeeEEEcccccCC-------CCCccccCceEEEE
Q 016953 168 SDFFANLVVEAVQAVKMTNQRGEVKYPIKGINILKAHGKSARDSYFLNGYALNAFRAAQ-------GMPLRVAPAKIACL 240 (380)
Q Consensus 168 ~~~ls~lv~~av~~~~~~~~~g~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~-------~~~~~~~~~kIll~ 240 (380)
++++++++++|+.++. .+|. |.|.+.. +...||++++|++|++++.++ .|+++++||||+++
T Consensus 153 ~~~i~~liadAv~~V~---~dgv-------I~Ve~~~-~~~~ds~lveGm~fdkg~~sp~~vt~~e~m~~~len~kIll~ 221 (546)
T 3rtk_A 153 DQSIGDLIAEAMDKVG---NEGV-------ITVEESN-TFGLQLELTEGMRFDKGYISGYFVTDPERQEAVLEDPYILLV 221 (546)
T ss_dssp CHHHHHHHHHHHHHSC---TTSE-------EEEECCS-SSSCEEEEECEEEESCCBSSGGGCSBTTTTBEEEESCEEEEB
T ss_pred chHHHHHHHHHHHHhc---cCCc-------eEEEecC-CcccceEEeeeEEEcCCccCcccccCcccCeeEecccEEEEE
Confidence 6789999999999883 3332 4555432 445799999999999999987 46788999999999
Q ss_pred EecccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcC------ceEEe--
Q 016953 241 DFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAG------AIAVR-- 312 (380)
Q Consensus 241 ~~~L~~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~------I~vv~-- 312 (380)
+++++ ++++ +.++++++.+.|++|||++++|++.|++||..|+ +++|+
T Consensus 222 d~kIs-------------~~~~-----------l~~~le~I~~~g~~lvIi~~~I~~~Al~~L~~n~lrg~~~v~aVk~~ 277 (546)
T 3rtk_A 222 SSKVS-------------TVKD-----------LLPLLEKVIGAGKPLLIIAEDVEGEALSTLVVNKIRGTFKSVAVKAP 277 (546)
T ss_dssp SSEEC-------------CSTT-----------THHHHHHHHTTTCCEEEEESEECHHHHHHHHHHHHHSSCCEEEEECS
T ss_pred CCccC-------------CHHH-----------HHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHhCCCCceEEEEeccc
Confidence 99643 4444 3567899999999999999999999999999764 46665
Q ss_pred ---eCChhHHHHHHHHhCCeEccccccccCCcCCCCCCcccceeEEEEEEcCeeEEEEEcCCCCC
Q 016953 313 ---RVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTTS 374 (380)
Q Consensus 313 ---~v~~~~l~~la~~tGa~ii~s~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g~~~~~ 374 (380)
+.++.+|+|||++|||+++++..+++. ++++++++|+|+.|+ ++++++++|+||+++.
T Consensus 278 ~~~~~rk~~le~ia~~tG~~ii~~~~~~~l-~~~~~~~LG~a~~v~---i~~d~~~~i~g~~~~~ 338 (546)
T 3rtk_A 278 GFGDRRKAMLQDMAILTGGQVISEEVGLTL-ENADLSLLGKARKVV---VTKDETTIVEGAGDTD 338 (546)
T ss_dssp SCHHHHHHHHHHHHHHHTCCCBCSSSSCCS-TTCCTTTSEEEEEEE---ECSSCEEEEEECSCHH
T ss_pred cccccchhhHHHHHHHhCCEEeeccccCcc-ccCCHhhCCeeEEEE---EcCCeEEEEcCCCCHH
Confidence 346889999999999999996433332 346778999999998 6899999999999864
No 27
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Probab=100.00 E-value=3.9e-41 Score=294.50 Aligned_cols=167 Identities=28% Similarity=0.395 Sum_probs=147.3
Q ss_pred cccceeEeeEEEcccccCCCCCccccCceEEEEEecccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCe
Q 016953 208 ARDSYFLNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGAN 287 (380)
Q Consensus 208 ~~dS~li~Giv~~~~~~~~~~~~~~~~~kIll~~~~L~~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~ 287 (380)
++||++++|++|++++.+++||++++||||++++|+|++++++.++++.++++++++.+.++|++++++++++|++.|+|
T Consensus 1 ~~dS~lv~Gvvl~k~~~~~~mpk~i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~n 80 (178)
T 1gml_A 1 MEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPD 80 (178)
T ss_dssp --CCSEEEEEEESCCCSSTTSCCEEESCCEEEESSCBSCC--------------CHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred CCCcEEEEEEEEeccccCCCCCcccccceEEEEecccCCccccCccEEEECCHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHhCCeEccccccccCCcCCCCCCccc-ceeEEEEEEcCeeEEE
Q 016953 288 VILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGS-ADEVVEERVADDDVIM 366 (380)
Q Consensus 288 lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa~ii~s~~~l~~~~~~~~~~lG~-~~~v~~~~ig~~~~~~ 366 (380)
||+|+++|+|.|++||.++||++++|+++++|+|||++|||+++++++++ +++.+|+ |+.|+++++|+++|++
T Consensus 81 VVl~~k~I~d~a~~~l~k~gI~~vr~v~~~dleria~atGa~iv~~~~~l------~~~~LG~~~~~v~~~~ig~~~~~~ 154 (178)
T 1gml_A 81 VVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGARIVSRPEEL------REDDVGTGAGLLEIKKIGDEYFTF 154 (178)
T ss_dssp EEEESSCBCHHHHHHHHHTTCEEECCCCHHHHHHHHHHHCCCEESCGGGC------CGGGSBCCEEEEEEEEETTEEEEE
T ss_pred EEEECCcccHHHHHHHHHCCCEEEecCCHHHHHHHHHHhCCeEeCChhhC------ChhhhCCcccEEEEEEECCeEEEE
Confidence 99999999999999999999999999999999999999999999999875 5678999 9999999999999999
Q ss_pred EEcCCCCCeeEEeC
Q 016953 367 IKGTKTTSAVCGLI 380 (380)
Q Consensus 367 f~g~~~~~~~t~l~ 380 (380)
|+||+++++|||||
T Consensus 155 ~~gc~~~~~~TIll 168 (178)
T 1gml_A 155 ITDCKDPKACTILL 168 (178)
T ss_dssp EEEESSTTSCEEEE
T ss_pred EECCCCCCEEEEEE
Confidence 99999999999986
No 28
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A
Probab=100.00 E-value=2e-37 Score=265.74 Aligned_cols=155 Identities=37% Similarity=0.618 Sum_probs=148.1
Q ss_pred EeeEEEcccccCCCCCccccCceEEEEEecccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCC
Q 016953 214 LNGYALNAFRAAQGMPLRVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTK 293 (380)
Q Consensus 214 i~Giv~~~~~~~~~~~~~~~~~kIll~~~~L~~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~ 293 (380)
++|++|++++.+++||++++||||++++|+|++++++.++++.++++++++.+.++|++++++++++|++.|+|||+|++
T Consensus 1 i~Gvv~~k~~~~~~mpk~i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nVVl~~k 80 (159)
T 1ass_A 1 MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQK 80 (159)
T ss_dssp CCCEEESCCCSCTTSCSEEEEEEEEEESSCBSCCHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHTTCSEEEESS
T ss_pred CceEEEecccCCCCCCcCcCCccEEEEecCcCCcccccceeEEECCHHHHHHHHHHHHHHHHHHhhhhhhCCCeEEEECC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHcCceEEeeCChhHHHHHHHHhCCeEccccccccCCcCCCCCCcccceeEEEEEEcCeeEEEEEcCCCC
Q 016953 294 GIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSADEVVEERVADDDVIMIKGTKTT 373 (380)
Q Consensus 294 ~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa~ii~s~~~l~~~~~~~~~~lG~~~~v~~~~ig~~~~~~f~g~~~~ 373 (380)
+|+|.|++||.++||++++|+++++|+|||++|||+++++++++ +++.+|+|+.|+++++|+++|++|+||++.
T Consensus 81 ~I~d~a~~~l~k~gI~~v~~v~~~dleria~atGa~iv~~~~~l------~~~~LG~~~~v~e~~ig~~~~~~~~g~~~~ 154 (159)
T 1ass_A 81 GIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDL------TPSVLGEAETVEERKIGDDRMTFVMGCKNH 154 (159)
T ss_dssp CBCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHTCCCBSSTTSC------CTTSCEEEEEEEEEEETTEEEEEEESCC--
T ss_pred ccCHHHHHHHHHCCCEEEccCCHHHHHHHHHHhCCeeeCccccC------CcccCccceEEEEEEECCeEEEEEECCCCc
Confidence 99999999999999999999999999999999999999999875 667899999999999999999999999985
Q ss_pred C
Q 016953 374 S 374 (380)
Q Consensus 374 ~ 374 (380)
+
T Consensus 155 ~ 155 (159)
T 1ass_A 155 H 155 (159)
T ss_dssp -
T ss_pred c
Confidence 4
No 29
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1
Probab=99.23 E-value=4.5e-11 Score=97.95 Aligned_cols=126 Identities=23% Similarity=0.332 Sum_probs=103.4
Q ss_pred eEEEcccccCCCCCc-------cccCceEEEEEecccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeE
Q 016953 216 GYALNAFRAAQGMPL-------RVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANV 288 (380)
Q Consensus 216 Giv~~~~~~~~~~~~-------~~~~~kIll~~~~L~~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~l 288 (380)
|+-|+++|.+++|.+ .++||.|++.+..++ +.. .+.+.++++.+.|.+|
T Consensus 1 GmqfDrGYlSpYfvtd~e~m~~~le~p~ILitdkKIs-------------~i~-----------~llP~LE~v~~~~~pL 56 (145)
T 1srv_A 1 GYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVS-------------NVR-----------ELLPILEQVAQTGKPL 56 (145)
T ss_dssp CEEESCCBSCGGGCSBTTTTBEEEEEEEEEEESSEEC-------------CHH-----------HHHHHHHHHHTTTCCE
T ss_pred CccccCCccCceeecCccccEEEeeccEEEEeccccc-------------CHH-----------HHHHHHHHHHHHCCCE
Confidence 789999999887644 467999999987653 332 3678889999999999
Q ss_pred EEeCCCCCHHHHHHHHHc------CceEEeeC-----ChhHHHHHHHHhCCeEccccccccCCcCCCCCCcccceeEEEE
Q 016953 289 ILTTKGIDDMALKYFVEA------GAIAVRRV-----RKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSADEVVEE 357 (380)
Q Consensus 289 Vi~~~~I~~~al~~l~~~------~I~vv~~v-----~~~~l~~la~~tGa~ii~s~~~l~~~~~~~~~~lG~~~~v~~~ 357 (380)
+|.+.+|+..|+..|.-| ++.+|+.- ++..|++||.+|||++++.-..+++ ++.+.+++|+|+++.
T Consensus 57 lIIAedvegeaLatLvvNklrg~l~v~AVKAPgfGd~Rk~~L~DiAilTGg~visee~g~~L-e~~~~~~LG~a~~v~-- 133 (145)
T 1srv_A 57 LIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKL-ENATLSMLGRAERVR-- 133 (145)
T ss_dssp EEEESEECHHHHHHHHHHHHTTSCCEEEEECCSSHHHHHHHHHHHHHHHTCCEECTTTTCCG-GGCCGGGCEEEEEEE--
T ss_pred EEEecccchhhhhhhhhhhhcccceEEEEeCCCcchhhHHHHHHHHHHhCCEEEccccCCcc-ccCCHhHCCccCEEE--
Confidence 999999999999999887 47778764 7899999999999999988666665 457778999999998
Q ss_pred EEcCeeEEEEEc
Q 016953 358 RVADDDVIMIKG 369 (380)
Q Consensus 358 ~ig~~~~~~f~g 369 (380)
+..+..+++.|
T Consensus 134 -vtkd~TtIv~G 144 (145)
T 1srv_A 134 -ITKDETTIVGG 144 (145)
T ss_dssp -ECSSCEEEEEE
T ss_pred -EcCCCeEEeCC
Confidence 66777777665
No 30
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis}
Probab=99.23 E-value=4.9e-11 Score=102.42 Aligned_cols=134 Identities=24% Similarity=0.265 Sum_probs=109.7
Q ss_pred ceeEeeEEEcccccCCCCCc-------cccCceEEEEEecccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016953 211 SYFLNGYALNAFRAAQGMPL-------RVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLK 283 (380)
Q Consensus 211 S~li~Giv~~~~~~~~~~~~-------~~~~~kIll~~~~L~~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~ 283 (380)
.++++|+-|+++|.+|+|.+ .++||.|++.+..+. +.. .+.+.++++.+
T Consensus 2 levvEGmqfDrGYiSpyfvtd~~~m~~~le~p~ILitdkKIs-------------~i~-----------~ilP~LE~~~~ 57 (194)
T 3m6c_A 2 LEFTEGIGFDKGFLSAYFVTDFDNQQAVLEDALILLHQDKIS-------------SLP-----------DLLPLLEKVAG 57 (194)
T ss_dssp CCCCSSEEESCCBSCGGGCSBTTTTBEEEEEEEEEEBSSEEC-------------CHH-----------HHHHHHHHHHH
T ss_pred eEEEeeeEccCcccCceeeeccCCcEEEEecceEEEEcCccC-------------CHH-----------HHHHHHHHHHH
Confidence 36889999999999887654 577999999887653 332 35778888888
Q ss_pred CCCeEEEeCCCCCHHHHHHHHHc------CceEEeeC-----ChhHHHHHHHHhCCeEccccccccCCcCCCCCCcccce
Q 016953 284 AGANVILTTKGIDDMALKYFVEA------GAIAVRRV-----RKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSAD 352 (380)
Q Consensus 284 ~gv~lVi~~~~I~~~al~~l~~~------~I~vv~~v-----~~~~l~~la~~tGa~ii~s~~~l~~~~~~~~~~lG~~~ 352 (380)
.|.+|+|.+.+|+..|+..|.-| ++.+|+.- ++..|++||.+|||++++.-..+++ ++.+..++|+|+
T Consensus 58 ~~kpLlIIAedvegeaLatLvvNklrg~l~v~AVKAPgfGd~Rk~~L~DiAilTGg~visee~g~~L-e~~~~~~LG~a~ 136 (194)
T 3m6c_A 58 TGKPLLIVAEDVEGEALATLVVNAIRKTLKAVAVKGPYFGDRRKAFLEDLAVVTGGQVVNPDAGMVL-REVGLEVLGSAR 136 (194)
T ss_dssp HTCCEEEEESEECHHHHHHHHHHHHHTSSCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCGGGTCCG-GGCCGGGCEEEE
T ss_pred hCCCeEEEecccccchhhhhhhhhccceEEEEEEECCCCchhhhhhhHhHHHhcCCeEEeccCCccc-ccCCHHHCCCcc
Confidence 99999999999999999999887 37777764 5788999999999999987666655 557778999999
Q ss_pred eEEEEEEcCeeEEEEEcCCC
Q 016953 353 EVVEERVADDDVIMIKGTKT 372 (380)
Q Consensus 353 ~v~~~~ig~~~~~~f~g~~~ 372 (380)
++. +..+..+++.|...
T Consensus 137 ~v~---vtkd~T~iv~G~g~ 153 (194)
T 3m6c_A 137 RVV---VSKDDTVIVDGGGT 153 (194)
T ss_dssp EEE---ECSSCEEEEEECCC
T ss_pred EEE---EcCCceEEecCCCC
Confidence 998 77888888887544
No 31
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A
Probab=99.18 E-value=2.5e-10 Score=98.33 Aligned_cols=130 Identities=22% Similarity=0.244 Sum_probs=107.4
Q ss_pred eeEEEcccccCCCCCc-------cccCceEEEEEecccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhCCCe
Q 016953 215 NGYALNAFRAAQGMPL-------RVAPAKIACLDFNLQKTKMQLGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGAN 287 (380)
Q Consensus 215 ~Giv~~~~~~~~~~~~-------~~~~~kIll~~~~L~~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~i~~~gv~ 287 (380)
+|+-|+++|.+|+|.+ .++||.|++.+..+. +.. .+.+.++++.+.|.+
T Consensus 13 ~~~qfDrGYiSPYfvtd~e~m~~~le~p~ILitdkKIs-------------~i~-----------~ilP~LE~v~~~~rp 68 (201)
T 3osx_A 13 EGMQFDRGYLSPYFINKPESGSVELENPYILLVDKKIS-------------NIR-----------ELLPVLEGVAKASKP 68 (201)
T ss_dssp CCEEESCCBSCGGGCSBTTTTBEEEESCEEEEEEEEEC-------------CHH-----------HHHHHHHHHHTSSCC
T ss_pred cccEecCccCChheeecccCCEEEecCCeEEEEcCccC-------------CHH-----------HHHHHHHHHHHhCCC
Confidence 4999999999887654 578999999998753 332 367889999999999
Q ss_pred EEEeCCCCCHHHHHHHHHc------CceEEeeC-----ChhHHHHHHHHhCCeEccccccccCCcCCCCCCcccceeEEE
Q 016953 288 VILTTKGIDDMALKYFVEA------GAIAVRRV-----RKEDMRHIAKATGATMVSTFADMEGEETFDSSLLGSADEVVE 356 (380)
Q Consensus 288 lVi~~~~I~~~al~~l~~~------~I~vv~~v-----~~~~l~~la~~tGa~ii~s~~~l~~~~~~~~~~lG~~~~v~~ 356 (380)
|+|.+.+|+..|+..|.-| ++.+|+.- ++..|++||.+|||++++.-..+++ ++.+..+||+|+++.
T Consensus 69 LlIIAEDvegEALatLvvNklrg~l~v~AVKAPgFGdrRk~~L~DIAilTGg~visee~g~~L-e~~~~~~LG~a~~V~- 146 (201)
T 3osx_A 69 LVIIAEDVEGEALATLVVNNMRGIVKVASVKAPGFGDRRKAMLQDIATLTNGTVISEEIGLEL-EKATLEDLGQAKRVV- 146 (201)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHTSCCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCGGGTCCG-GGCCGGGCEEEEEEE-
T ss_pred eEEEeccccchhhhHHHHhhccceEEEEEEeCCCCccchhhhhHhHHHHhCCEEEecccCCcc-ccCCHhhCCCccEEE-
Confidence 9999999999999999887 47778764 4778999999999999988766655 557778999999998
Q ss_pred EEEcCeeEEEEEcCCC
Q 016953 357 ERVADDDVIMIKGTKT 372 (380)
Q Consensus 357 ~~ig~~~~~~f~g~~~ 372 (380)
+..+..+++.|...
T Consensus 147 --vtkd~TtIv~G~G~ 160 (201)
T 3osx_A 147 --INKDTTTIIDGVGE 160 (201)
T ss_dssp --ECSSCEEEEEECCC
T ss_pred --EcCCceEEecCCCC
Confidence 77888888887543
No 32
>1o13_A Probable NIFB protein; ribonuclease H-like motif fold, structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.83A {Thermotoga maritima} SCOP: c.55.5.1 PDB: 1t3v_A
Probab=82.14 E-value=3.5 Score=33.17 Aligned_cols=55 Identities=13% Similarity=0.190 Sum_probs=43.1
Q ss_pred HHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHhCCeEc
Q 016953 276 ERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMV 331 (380)
Q Consensus 276 ~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa~ii 331 (380)
...+.|.+.++++|+|. +|.+.+.+.|.++||-++.......-+.|.....+++-
T Consensus 67 ~~a~~L~~~gv~vVI~g-~IG~~a~~~L~~~GI~v~~~~~g~i~eal~~~~~G~L~ 121 (136)
T 1o13_A 67 AVPNFVKEKGAELVIVR-GIGRRAIAAFEAMGVKVIKGASGTVEEVVNQYLSGQLK 121 (136)
T ss_dssp CHHHHHHHTTCSEEECS-CCCHHHHHHHHHTTCEEECSCCSBHHHHHHHHHTTC--
T ss_pred HHHHHHHHCCCCEEEEC-CCCHHHHHHHHHCCCEEEecCCCCHHHHHHHHHhCCCC
Confidence 34566777899999998 69999999999999999997776666666666666533
No 33
>2yx6_A Hypothetical protein PH0822; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=80.28 E-value=4.5 Score=31.53 Aligned_cols=54 Identities=26% Similarity=0.330 Sum_probs=43.4
Q ss_pred HHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHhCCeE
Q 016953 276 ERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATM 330 (380)
Q Consensus 276 ~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa~i 330 (380)
...+.|.+.|+++|+|. ++.+.+.+.|.++||-++.......-+.|.....+.+
T Consensus 54 ~~~~~L~~~gv~~vi~~-~iG~~a~~~L~~~GI~v~~~~~~~v~eal~~~~~g~L 107 (121)
T 2yx6_A 54 DLPNFIKDHGAKIVLTY-GIGRRAIEYFNSLGISVVTGVYGRISDVIKAFIGGKL 107 (121)
T ss_dssp HHHHHHHHTTCCEEECS-BCCHHHHHHHHHTTCEEECSBCSBHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCCEEEEC-CCCHhHHHHHHHCCCEEEECCCCCHHHHHHHHHcCCC
Confidence 44566778899999998 6999999999999999998766666666666666653
No 34
>1eo1_A Hypothetical protein MTH1175; mixed A/B protein, mixed beta sheet, strand order 321456; NMR {Methanothermobacterthermautotrophicus} SCOP: c.55.5.1
Probab=78.17 E-value=5.5 Score=31.17 Aligned_cols=53 Identities=11% Similarity=0.149 Sum_probs=42.6
Q ss_pred HHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHhCCeE
Q 016953 277 RIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATM 330 (380)
Q Consensus 277 ~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa~i 330 (380)
..+.|.+.|+++|+|. ++.+.+.+.|.++||-++.......-+.|.....+.+
T Consensus 57 ~~~~l~~~gv~~vi~~-~iG~~a~~~L~~~GI~v~~~~~~~i~eal~~~~~g~L 109 (124)
T 1eo1_A 57 TAQIIANNGVKAVIAS-SPGPNAFEVLNELGIKIYRATGTSVEENLKLFTEGNL 109 (124)
T ss_dssp HHHHHHHTTCCEEEEC-CSSHHHHHHHHHHTCEEEECCSCCHHHHHHHHHTTCS
T ss_pred HHHHHHHCCCCEEEEC-CcCHHHHHHHHHCCCEEEEcCCCCHHHHHHHHHhCCC
Confidence 3566778899999999 5999999999999999999766655666666666653
No 35
>2wfb_A Putative uncharacterized protein ORP; mixed molybdenum-copper sulphide cluster, alpha and beta protein, biosynthetic protein; 2.00A {Desulfovibrio gigas}
Probab=76.87 E-value=5.2 Score=31.13 Aligned_cols=53 Identities=19% Similarity=0.212 Sum_probs=41.6
Q ss_pred HHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCCh-hHHHHHHHHhCCeE
Q 016953 277 RIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRK-EDMRHIAKATGATM 330 (380)
Q Consensus 277 ~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~-~~l~~la~~tGa~i 330 (380)
..+.|.+.|+++|+|. ++.+.+.+.|.++||-++..... ..-+.|.....+.+
T Consensus 59 ~~~~l~~~gv~~vi~~-~iG~~a~~~L~~~GI~v~~~~~g~~i~eal~~~~~g~L 112 (120)
T 2wfb_A 59 AAQVLAKSGAGVLLTG-YVGPKAFQALQAAGIKVGQDLEGLTVRQAVQRFLDGQV 112 (120)
T ss_dssp HHHHHHHHTEEEEECS-CCCHHHHHHHHHTTCEEECCCTTSBHHHHHHHHHTTCS
T ss_pred HHHHHHHCCCCEEEEC-CCCHhHHHHHHHCCCEEEEcCCCCcHHHHHHHHHcCCC
Confidence 4566667899999998 69999999999999999997665 55555666555544
No 36
>1rdu_A Conserved hypothetical protein; atnos, candid, structural genomics, joint center for structu genomics, JCSG, protein structure initiative; NMR {Thermotoga maritima} SCOP: c.55.5.1
Probab=69.50 E-value=5.5 Score=30.73 Aligned_cols=51 Identities=14% Similarity=0.203 Sum_probs=41.7
Q ss_pred HHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHhCCe
Q 016953 278 IEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGAT 329 (380)
Q Consensus 278 v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa~ 329 (380)
.+.|.+.|+++|+|. ++.+.+.+.|.++||.++.......-+.|.....+.
T Consensus 55 ~~~l~~~gv~~vi~~-~iG~~a~~~L~~~GI~v~~~~~~~i~eal~~~~~g~ 105 (116)
T 1rdu_A 55 VQSLVSKGVEYLIAS-NVGRNAFETLKAAGVKVYRFEGGTVQEAIDAFSEGR 105 (116)
T ss_dssp HHHHHTTTCCEEECS-SCCSSCHHHHHTTTCEEECCCSCBHHHHHHHHHTTC
T ss_pred HHHHHHcCCCEEEEC-CCCHhHHHHHHHCCCEEEECCCCCHHHHHHHHHhCC
Confidence 455678899999998 599999999999999999976666666666666665
No 37
>2re2_A Uncharacterized protein TA1041; dinitrogenase iron-molybdenum cofactor, structural genomics, center for structural genomics; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728}
Probab=68.65 E-value=10 Score=30.29 Aligned_cols=52 Identities=10% Similarity=0.052 Sum_probs=40.4
Q ss_pred HHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHhCCe
Q 016953 276 ERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGAT 329 (380)
Q Consensus 276 ~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa~ 329 (380)
...+.|.+.|+++|||. ++.+.+.+.|.. ||-++.......-+.+.....+.
T Consensus 70 ~~~~~L~~~gv~~VI~g-~iG~~a~~~L~~-GI~v~~~~~~~veeal~~~~~G~ 121 (136)
T 2re2_A 70 FMLKSALDHGANALVLS-EIGSPGFNFIKN-KMDVYIVPEMPVADALKLILEGK 121 (136)
T ss_dssp HHHHHHHHTTCSEEEES-CCBHHHHHHHTT-TSEEEECCSCBHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCEEEEC-CCCHhHHHHHHC-CCEEEEcCCCCHHHHHHHHHhCC
Confidence 34566667899999998 689999999999 99999986645555566666555
No 38
>2qtd_A Uncharacterized protein MJ0327; ribonuclease H-like motif fold, iron-molybdenum cofactor, ST genomics; HET: MSE PG4; 1.70A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 2kla_A
Probab=59.53 E-value=22 Score=26.70 Aligned_cols=50 Identities=14% Similarity=0.192 Sum_probs=39.2
Q ss_pred HHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHhCCeE
Q 016953 279 EKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATM 330 (380)
Q Consensus 279 ~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa~i 330 (380)
+.+.+.|+++|+|. ++.+.+.+.|.++ |-++.......-+.+.....+.+
T Consensus 50 ~~l~~~gv~~vi~~-~iG~~a~~~L~~~-I~v~~~~~~~v~eal~~~~~g~L 99 (105)
T 2qtd_A 50 KSIVKENVNAIICK-NISEENYKKFSKK-IEIYHAEGDDVDKNISLFIEGEL 99 (105)
T ss_dssp HHHHHTCCSEEEES-CCCHHHHHHHHTT-CEEEECCSSCHHHHHHHHHTTCS
T ss_pred HHHHHCCCCEEEEC-CCCHHHHHHHHhc-cEEEECCCCCHHHHHHHHHcCCC
Confidence 45566899999997 6999999999999 99999766655566666655543
No 39
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=46.65 E-value=52 Score=25.83 Aligned_cols=50 Identities=10% Similarity=0.118 Sum_probs=36.8
Q ss_pred HHHHHHHhCCCeEEEeCCCCCH-----HHHHHHHHcCceEEeeCChhHHHHHHHHhCC
Q 016953 276 ERIEKLLKAGANVILTTKGIDD-----MALKYFVEAGAIAVRRVRKEDMRHIAKATGA 328 (380)
Q Consensus 276 ~~v~~i~~~gv~lVi~~~~I~~-----~al~~l~~~~I~vv~~v~~~~l~~la~~tGa 328 (380)
..++.|.+..+.+|+.+.+.+| ....++.+++|.++.--++.+ |.+++|-
T Consensus 31 ~v~Kai~~gka~LViiA~D~~p~~~~~~i~~lc~~~~Ip~~~v~sk~~---LG~a~G~ 85 (126)
T 2xzm_U 31 EVLRTIEAKQALFVCVAEDCDQGNYVKLVKALCAKNEIKYVSVPKRAS---LGEYLGH 85 (126)
T ss_dssp HHHHHHHHTCCSEEEEESSCCSTTHHHHHHHHHHHTTCCEEEESCSHH---HHHHHTC
T ss_pred HHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECCHHH---HHHHHCC
Confidence 3456667778999999999975 567888999999986555555 5555553
No 40
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding protein, MOLY binding protein, metal transport; 1.50A {Haemophilus influenzae} PDB: 3psa_A
Probab=46.29 E-value=36 Score=30.91 Aligned_cols=52 Identities=23% Similarity=0.247 Sum_probs=40.8
Q ss_pred HHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeC-C-------------------------hhHHHHHHHHhCCe
Q 016953 278 IEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRV-R-------------------------KEDMRHIAKATGAT 329 (380)
Q Consensus 278 v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v-~-------------------------~~~l~~la~~tGa~ 329 (380)
+++|.+.+|+|||.....++...+.|.+.||-++--- . .+.++.+++++|-.
T Consensus 77 ~E~i~~l~PDlIi~~~~~~~~~~~~L~~~Gipvv~~~~~~~~~~~~~~~~pt~~~~~~~~~~~~~~~i~~lg~~lg~e 154 (326)
T 3psh_A 77 IESLLALKPDVVFVTNYAPSEMIKQISDVNIPVVAISLRTGEVGEKGKLNPTLTDEDKAYNDGLKQGIELIAEVFEKK 154 (326)
T ss_dssp HHHHHHTCCSEEEEETTCCHHHHHHHHTTTCCEEEECSCCSCGGGTTCSSCCCTTHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHccCCCEEEEeCCCChHHHHHHHHcCCCEEEEeccccccccccccccccccccchhhhhHHHHHHHHHHHcCCH
Confidence 4778889999999876667778888999998877531 1 36789999999964
No 41
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=46.11 E-value=61 Score=24.14 Aligned_cols=51 Identities=12% Similarity=0.066 Sum_probs=37.3
Q ss_pred HHHHHHHhCCCeEEEeCCCCCHH----HHHHHHHcCceEEeeCChhHHHHHHHHhCCe
Q 016953 276 ERIEKLLKAGANVILTTKGIDDM----ALKYFVEAGAIAVRRVRKEDMRHIAKATGAT 329 (380)
Q Consensus 276 ~~v~~i~~~gv~lVi~~~~I~~~----al~~l~~~~I~vv~~v~~~~l~~la~~tGa~ 329 (380)
...+.|.+-.+.+||.+.+.++. ..+++..++|.++..-++.+ |..++|-.
T Consensus 26 ~v~kai~~gka~lViiA~D~~~~~~~~i~~~c~~~~vp~~~~~s~~e---LG~A~Gk~ 80 (101)
T 3v7q_A 26 LVIKEIRNARAKLVLLTEDASSNTAKKVTDKCNYYKVPYKKVESRAV---LGRSIGKE 80 (101)
T ss_dssp HHHHHHHTTCCSEEEEETTSCHHHHHHHHHHHHHTTCCEEEESCHHH---HHHHTTSS
T ss_pred hhHHHHhcCceeEEEEeccccccchhhhcccccccCCCeeeechHHH---HHhhhCcc
Confidence 44566777789999999999984 44556778999888766655 55566654
No 42
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=45.24 E-value=61 Score=23.16 Aligned_cols=51 Identities=16% Similarity=0.233 Sum_probs=36.4
Q ss_pred HHHHHHHHhCCCeEEEeCCCCCHHHH----HHHHHcCceEEeeCChhHHHHHHHHhCC
Q 016953 275 KERIEKLLKAGANVILTTKGIDDMAL----KYFVEAGAIAVRRVRKEDMRHIAKATGA 328 (380)
Q Consensus 275 ~~~v~~i~~~gv~lVi~~~~I~~~al----~~l~~~~I~vv~~v~~~~l~~la~~tGa 328 (380)
+...+.+.+..+.+|+.+.+.++... +++.+++|.++.--++.+| .+++|-
T Consensus 17 ~~v~kai~~gkaklViiA~D~~~~~~~~i~~lc~~~~Ip~~~v~sk~eL---G~a~Gk 71 (82)
T 3v7e_A 17 KQTVKALKRGSVKEVVVAKDADPILTSSVVSLAEDQGISVSMVESMKKL---GKACGI 71 (82)
T ss_dssp HHHHHHHTTTCEEEEEEETTSCHHHHHHHHHHHHHHTCCEEEESCHHHH---HHHHTC
T ss_pred HHHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCHHHH---HHHhCC
Confidence 34456677778999999999998644 4457789998887766554 445554
No 43
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=44.01 E-value=62 Score=24.07 Aligned_cols=52 Identities=4% Similarity=0.010 Sum_probs=37.0
Q ss_pred HHHHHHHHhCCCeEEEeCCCCCHHHH----HHHHHcCceEEeeCChhHHHHHHHHhCCe
Q 016953 275 KERIEKLLKAGANVILTTKGIDDMAL----KYFVEAGAIAVRRVRKEDMRHIAKATGAT 329 (380)
Q Consensus 275 ~~~v~~i~~~gv~lVi~~~~I~~~al----~~l~~~~I~vv~~v~~~~l~~la~~tGa~ 329 (380)
+...+.|.+-.+.+||.+.+.++... +++..++|.++..-++.+ |..++|-.
T Consensus 24 ~~v~kai~~gka~lViiA~D~~~~~~~~i~~~c~~~~ip~~~~~s~~e---LG~a~Gk~ 79 (101)
T 3on1_A 24 EQVVKAVQNGQVTLVILSSDAGIHTKKKLLDKCGSYQIPVKVVGNRQM---LGRAIGKH 79 (101)
T ss_dssp HHHHHHHHTTCCSEEEEETTSCHHHHHHHHHHHHHHTCCEEEESCHHH---HHHHTTSS
T ss_pred HHHHHHHHcCCCcEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCHHH---HHHHhCCc
Confidence 34456677778999999999998544 455778999987766655 55556654
No 44
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=43.99 E-value=56 Score=25.32 Aligned_cols=49 Identities=14% Similarity=0.079 Sum_probs=37.4
Q ss_pred HHHHHHHhCCCeEEEeCCCCCHH-----HHHHHHHcCceEEeeCChhHHHHHHHHhC
Q 016953 276 ERIEKLLKAGANVILTTKGIDDM-----ALKYFVEAGAIAVRRVRKEDMRHIAKATG 327 (380)
Q Consensus 276 ~~v~~i~~~gv~lVi~~~~I~~~-----al~~l~~~~I~vv~~v~~~~l~~la~~tG 327 (380)
...+.|.+..+.+||.+.++++. ...+|.++||.++.--++.+|-+ ++|
T Consensus 27 ~v~kai~~gkakLViiA~D~~~~~~~~~l~~lc~~~~VP~~~v~sk~eLG~---a~g 80 (121)
T 2lbw_A 27 EVVKALRKGEKGLVVIAGDIWPADVISHIPVLCEDHSVPYIFIPSKQDLGA---AGA 80 (121)
T ss_dssp HHHHHHHHSCCCEEEECTTCSCTTHHHHHHHHHHHTCCCEEECCCHHHHHH---HHT
T ss_pred HHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHHHHHH---HhC
Confidence 44566777789999999999884 45678889999887777766555 455
No 45
>2r79_A Periplasmic binding protein; heme transport, transport prote; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=43.01 E-value=59 Score=28.77 Aligned_cols=52 Identities=15% Similarity=0.241 Sum_probs=39.5
Q ss_pred HHHHHhCCCeEEEeCCCC-CHHHHHHHHHcCceEEee---CC----hhHHHHHHHHhCCe
Q 016953 278 IEKLLKAGANVILTTKGI-DDMALKYFVEAGAIAVRR---VR----KEDMRHIAKATGAT 329 (380)
Q Consensus 278 v~~i~~~gv~lVi~~~~I-~~~al~~l~~~~I~vv~~---v~----~~~l~~la~~tGa~ 329 (380)
+++|...+|+|||..... ++...+.|.+.||.++-- -+ .+.++.+++++|-.
T Consensus 52 ~E~i~~l~PDLIi~~~~~~~~~~~~~L~~~gipvv~~~~~~~~~~~~~~i~~lg~~~g~~ 111 (283)
T 2r79_A 52 AEGVLALRPDILIGTEEMGPPPVLKQLEGAGVRVETLSAKPDLEALESNLKKLGDWLGVP 111 (283)
T ss_dssp HHHHHTTCCSEEEECTTCCCHHHHHHHHHTTCCEEECCCCSSHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhcCCCEEEEeCccCcHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHHHHhCCH
Confidence 577889999999997653 567788899999876643 12 35688899999864
No 46
>2r7a_A Bacterial heme binding protein; periplasmic binding protein, heme transport, transport protein; HET: HEM; 2.05A {Shigella dysenteriae} PDB: 2rg7_A
Probab=41.09 E-value=56 Score=28.29 Aligned_cols=52 Identities=17% Similarity=0.196 Sum_probs=38.5
Q ss_pred HHHHHhCCCeEEEeCCC-CCHHHHHHHHHcCceEEee--C--Ch----hHHHHHHHHhCCe
Q 016953 278 IEKLLKAGANVILTTKG-IDDMALKYFVEAGAIAVRR--V--RK----EDMRHIAKATGAT 329 (380)
Q Consensus 278 v~~i~~~gv~lVi~~~~-I~~~al~~l~~~~I~vv~~--v--~~----~~l~~la~~tGa~ 329 (380)
+++|.+.+|+|||.... .++...+.|.+.||.++-- . +. +.++.+++++|-.
T Consensus 52 ~E~i~~l~PDLIi~~~~~~~~~~~~~L~~~gipvv~~~~~~~~~~~~~~~i~~lg~~~g~~ 112 (256)
T 2r7a_A 52 SEGILSLRPDSVITWQDAGPQIVLDQLRAQKVNVVTLPRVPATLEQMYANIRQLAKTLQVP 112 (256)
T ss_dssp HHHHHTTCCSEEEEETTCSCHHHHHHHHHTTCEEEEECCCSCCHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHccCCCEEEEcCCCCCHHHHHHHHHcCCcEEEecCCCCCHHHHHHHHHHHHHHhCCH
Confidence 57788999999998654 4677888899999866542 1 22 3588888888864
No 47
>2wi8_A Iron-uptake system-binding protein; bacillibactin and enterobactin binding, triscatecholate BIND protein, iron transport; 1.55A {Bacillus subtilis} PDB: 2why_A 2xuz_A* 2xv1_A* 2phz_A
Probab=40.92 E-value=46 Score=30.04 Aligned_cols=52 Identities=31% Similarity=0.393 Sum_probs=38.7
Q ss_pred HHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCC----hhHHHHHHHHhCCe
Q 016953 278 IEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVR----KEDMRHIAKATGAT 329 (380)
Q Consensus 278 v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~----~~~l~~la~~tGa~ 329 (380)
+++|.+.+|||||.....++...+.|.+.+..++-... .+.++.+++++|-.
T Consensus 89 ~E~I~~l~PDLIi~~~~~~~~~~~~L~~~gp~v~~~~~~~~~~~~i~~lg~~lg~e 144 (311)
T 2wi8_A 89 IEKILEMKPDVILASTKFPEKTLQKISTAGTTIPVSHISSNWKENMMLLAQLTGKE 144 (311)
T ss_dssp HHHHHHHCCSEEEEETTSCHHHHHHHHTTSCEEEECCCGGGHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCCCEEEEcCccCHHHHHHHHhhCCEEEeeCCCcCHHHHHHHHHHHhCCH
Confidence 46677789999998766778888888888866554322 45688888888864
No 48
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=39.31 E-value=97 Score=23.14 Aligned_cols=52 Identities=13% Similarity=0.126 Sum_probs=36.8
Q ss_pred HHHHHHHHhCCCeEEEeCCCCCHHH----HHHHHHcCceEEe-eCChhHHHHHHHHhCCe
Q 016953 275 KERIEKLLKAGANVILTTKGIDDMA----LKYFVEAGAIAVR-RVRKEDMRHIAKATGAT 329 (380)
Q Consensus 275 ~~~v~~i~~~gv~lVi~~~~I~~~a----l~~l~~~~I~vv~-~v~~~~l~~la~~tGa~ 329 (380)
++..+.|.+-.+.+||.+.+.++.. .+++..++|.++. .-++.+ |..++|-.
T Consensus 28 ~~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~ip~~~~~~s~~e---LG~a~Gk~ 84 (104)
T 4a18_G 28 KSTIKAIRNGTAKLVFISNNCPTVRKSEIEYYASLAQISIHHFVGSNVE---LGTACGKY 84 (104)
T ss_dssp HHHHHHHHHTCCCEEEECTTSCHHHHHHHHHHHHHHTCEEEECSSCHHH---HHHHTTCS
T ss_pred HHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCcEEEecCCHHH---HHHHhCCc
Confidence 4456677777899999999999843 4456667999986 566665 45555643
No 49
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=39.07 E-value=45 Score=26.53 Aligned_cols=50 Identities=12% Similarity=0.112 Sum_probs=37.2
Q ss_pred HHHHHHHhCCCeEEEeCCCCCHH-----HHHHHHHcCceEEeeCChhHHHHHHHHhCC
Q 016953 276 ERIEKLLKAGANVILTTKGIDDM-----ALKYFVEAGAIAVRRVRKEDMRHIAKATGA 328 (380)
Q Consensus 276 ~~v~~i~~~gv~lVi~~~~I~~~-----al~~l~~~~I~vv~~v~~~~l~~la~~tGa 328 (380)
...+.|.+..+.+|+.+.++++. ...+|.++||.++.--++.+ |.+++|-
T Consensus 39 ~v~kai~~gkakLViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~e---LG~a~G~ 93 (134)
T 2ale_A 39 EATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSRVA---LGRACGV 93 (134)
T ss_dssp HHHHHHHHTCEEEEEEETTCSSGGGGTHHHHHHHHHTCCEEEESCHHH---HHHHTTC
T ss_pred HHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHhcCCCEEEECCHHH---HHHHhCC
Confidence 44566677788999999999985 56778889999887766655 5555554
No 50
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Probab=37.41 E-value=66 Score=27.82 Aligned_cols=52 Identities=17% Similarity=0.213 Sum_probs=39.4
Q ss_pred HHHHHhCCCeEEEeCCCCC-HHHHHHHHHcCceEEee---C----ChhHHHHHHHHhCCe
Q 016953 278 IEKLLKAGANVILTTKGID-DMALKYFVEAGAIAVRR---V----RKEDMRHIAKATGAT 329 (380)
Q Consensus 278 v~~i~~~gv~lVi~~~~I~-~~al~~l~~~~I~vv~~---v----~~~~l~~la~~tGa~ 329 (380)
+++|.+.+|+|||...... +...+.|.+.||.++-- - -.+.++.+++++|-.
T Consensus 52 ~E~i~~l~PDlIi~~~~~~~~~~~~~L~~~gipvv~~~~~~~~~~~~~~i~~lg~~~g~~ 111 (255)
T 3md9_A 52 AEGILAMKPTMLLVSELAQPSLVLTQIASSGVNVVTVPGQTTPESVAMKINAVATALHQT 111 (255)
T ss_dssp HHHHHTTCCSEEEEETTCSCHHHHHHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHccCCCEEEEcCCcCchhHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHHHHHhCCH
Confidence 5788999999999987664 56778899999877643 1 234578899999964
No 51
>1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen decarboxylase coproporphyrinogen, X-RAY crystallography, lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1 PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A 1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A 1jpk_A 3gw0_A 2q71_A* 2q6z_A*
Probab=35.30 E-value=49 Score=30.89 Aligned_cols=104 Identities=15% Similarity=0.189 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH-hC------CCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHhCCe--
Q 016953 259 DPRELEKIRQREADMTKERIEKLL-KA------GANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGAT-- 329 (380)
Q Consensus 259 ~~~~l~~~~~~E~~~l~~~v~~i~-~~------gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa~-- 329 (380)
+++++++|. +.+++++++.++ +. ++.+++...+- ...+.++.+.|+-++..-...+++...+..|.+
T Consensus 225 sp~~f~ef~---~p~~k~i~~~i~~~~~~~g~~~~p~i~~~~G~-~~~l~~l~~~g~d~i~~d~~~dl~~a~~~~g~~~~ 300 (367)
T 1r3s_A 225 GPQLFNKFA---LPYIRDVAKQVKARLREAGLAPVPMIIFAKDG-HFALEELAQAGYEVVGLDWTVAPKKARECVGKTVT 300 (367)
T ss_dssp CHHHHHHHT---HHHHHHHHHHHHHHHHHTTCCCCCEEEEETTC-GGGHHHHTTSSCSEEECCTTSCHHHHHHHHCSSSE
T ss_pred CHHHHHHHh---HHHHHHHHHHHhhhhccccCCCCCeEEEcCCc-HHHHHHHHhcCCCEEEeCCCCCHHHHHHHcCCCeE
Confidence 355666655 578888888888 55 46666554454 667888999998888776677888898888874
Q ss_pred EccccccccCCcCCCCCCcccceeEEE------EEEcCeeEEEEEcCCCCC
Q 016953 330 MVSTFADMEGEETFDSSLLGSADEVVE------ERVADDDVIMIKGTKTTS 374 (380)
Q Consensus 330 ii~s~~~l~~~~~~~~~~lG~~~~v~~------~~ig~~~~~~f~g~~~~~ 374 (380)
+...++.. -..|+-+.++. ..++...|++=.||.-+.
T Consensus 301 l~Gnldp~--------~L~gt~e~i~~~v~~~l~~~g~~g~I~~~ghgi~~ 343 (367)
T 1r3s_A 301 LQGNLDPC--------ALYASEEEIGQLVKQMLDDFGPHRYIANLGHGLYP 343 (367)
T ss_dssp EEEEECGG--------GGGSCHHHHHHHHHHHHHHHCSSSEEEEESSCCCT
T ss_pred EEeCCChH--------HhcCCHHHHHHHHHHHHHHhCCCCeeecCCCCCCC
Confidence 44444321 12344333322 112445677777775443
No 52
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=34.53 E-value=1e+02 Score=23.48 Aligned_cols=49 Identities=12% Similarity=0.079 Sum_probs=36.6
Q ss_pred HHHHHHHHhCCCeEEEeCCCCCHH----HHHHHHHcCceEEee-CChhHHHHHH
Q 016953 275 KERIEKLLKAGANVILTTKGIDDM----ALKYFVEAGAIAVRR-VRKEDMRHIA 323 (380)
Q Consensus 275 ~~~v~~i~~~gv~lVi~~~~I~~~----al~~l~~~~I~vv~~-v~~~~l~~la 323 (380)
++.++.|.+-.+.+||.+.+.++. ..+++..++|.++.- -+..+|-+.+
T Consensus 32 ~~t~kai~~gkakLVilA~D~~~~~~~~i~~~c~~~~ipv~~~~~s~~eLG~A~ 85 (112)
T 3iz5_f 32 KTVLKTLRSSLGKLIILANNCPPLRKSEIETYAMLAKISVHHFHGNNVDLGTAC 85 (112)
T ss_dssp HHHHHHHHTTCCSEEEECSCCCHHHHHHHHHHHHHTTCCEECCCCTTCTHHHHH
T ss_pred HHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCcEEEeCCCHHHHHHHh
Confidence 445677777889999999999974 556678889998877 6666654444
No 53
>2q8p_A Iron-regulated surface determinant E; helical backbone metal receptor superfamily, metal transport; HET: HEM; 1.95A {Staphylococcus aureus subsp} PDB: 2q8q_A*
Probab=34.48 E-value=41 Score=29.26 Aligned_cols=52 Identities=10% Similarity=0.144 Sum_probs=37.3
Q ss_pred HHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEe--eCC----hhHHHHHHHHhCCe
Q 016953 278 IEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVR--RVR----KEDMRHIAKATGAT 329 (380)
Q Consensus 278 v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~--~v~----~~~l~~la~~tGa~ 329 (380)
+++|...+|||||.....++...+.|.+.||-++- .-+ .+.++.+++++|-.
T Consensus 53 ~E~i~~l~PDLIi~~~~~~~~~~~~L~~~gipvv~~~~~~~~~~~~~i~~lg~~~g~~ 110 (260)
T 2q8p_A 53 VEAVKKLKPTHVLSVSTIKDEMQPFYKQLNMKGYFYDFDSLKGMQKSITQLGDQFNRK 110 (260)
T ss_dssp HHHHHHTCCSEEEEEGGGHHHHHHHHHHHTSCCEEECCSSHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcCCCEEEecCccCHHHHHHHHHcCCcEEEecCCCHHHHHHHHHHHHHHhCCh
Confidence 46788889999998766656677788888866443 211 35678888888864
No 54
>1n2z_A Vitamin B12 transport protein BTUF; HET: CNC PG4; 2.00A {Escherichia coli} SCOP: c.92.2.2 PDB: 2qi9_F* 4dbl_E 1n4a_A* 1n4d_A
Probab=34.39 E-value=55 Score=28.17 Aligned_cols=51 Identities=10% Similarity=0.233 Sum_probs=36.0
Q ss_pred HHHHHhCCCeEEEeCC-CCCHHHHHHHHHcCceEEeeC--C----hhHHHHHHHHhCC
Q 016953 278 IEKLLKAGANVILTTK-GIDDMALKYFVEAGAIAVRRV--R----KEDMRHIAKATGA 328 (380)
Q Consensus 278 v~~i~~~gv~lVi~~~-~I~~~al~~l~~~~I~vv~~v--~----~~~l~~la~~tGa 328 (380)
+++|.+.+|+|||... ..++...+.|.+.||.++--- + .+.++.+++++|-
T Consensus 50 ~E~i~~l~PDLIi~~~~~~~~~~~~~L~~~gipvv~~~~~~~~~~~~~i~~lg~~lg~ 107 (245)
T 1n2z_A 50 LERIVALKPDLVIAWRGGNAERQVDQLASLGIKVMWVDATSIEQIANALRQLAPWSPQ 107 (245)
T ss_dssp HHHHHHTCCSEEEECTTTSCHHHHHHHHHHTCCEEECCCCSHHHHHHHHHHHGGGCSC
T ss_pred HHHHhccCCCEEEEeCCCCcHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHHHhCC
Confidence 4778888999999863 567778888999887776421 1 2446666777765
No 55
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=33.76 E-value=78 Score=25.05 Aligned_cols=51 Identities=16% Similarity=0.151 Sum_probs=36.6
Q ss_pred HHHHHHHhCCCeEEEeCCCCCHHH-----HHHHHHcCceEEeeCChhHHHHHHHHhCCe
Q 016953 276 ERIEKLLKAGANVILTTKGIDDMA-----LKYFVEAGAIAVRRVRKEDMRHIAKATGAT 329 (380)
Q Consensus 276 ~~v~~i~~~gv~lVi~~~~I~~~a-----l~~l~~~~I~vv~~v~~~~l~~la~~tGa~ 329 (380)
...+.|.+..+.+||.+.+.++.- .+++.+++|.++..-++.+ |..++|-.
T Consensus 48 ~v~kal~~gkaklViiA~D~~~~~~~~~l~~lc~~~~IP~~~v~sk~e---LG~a~G~~ 103 (135)
T 2aif_A 48 EATKALNRGIAEIVLLAADAEPLEILLHLPLVCEDKNTPYVFVRSKVA---LGRACGVS 103 (135)
T ss_dssp HHHHHHHTTCEEEEEEETTCSCHHHHHHHHHHHHHTTCCEEEESCHHH---HHHHTTCS
T ss_pred HHHHHHHcCCCeEEEEecCCChHHHHhHHHHHHHhcCCcEEEECCHHH---HHHHhCCC
Confidence 445666667789999999998863 3567788999987766655 55555543
No 56
>2etv_A Iron(III) ABC transporter, periplasmic iron-bindi protein, putative; periplasmic iron-binding protein, structural genomics; HET: MLY; 1.70A {Thermotoga maritima} SCOP: c.92.2.4
Probab=33.60 E-value=51 Score=30.30 Aligned_cols=52 Identities=15% Similarity=0.097 Sum_probs=36.1
Q ss_pred HHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeC-C----------hhHHHHHHHHhCCe
Q 016953 278 IEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRV-R----------KEDMRHIAKATGAT 329 (380)
Q Consensus 278 v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v-~----------~~~l~~la~~tGa~ 329 (380)
+|+|.+.+|+|||....-.+.+.+.+.+.||.++--- . .+.++.+++++|-.
T Consensus 89 ~E~Ilal~PDLIi~~~~~~~~~~~~~~~~GiPvv~~~~~~~~~~~~~~~~~~i~~lG~~lG~e 151 (346)
T 2etv_A 89 LESLITLQPDVVFITYVDRXTAXDIQEXTGIPVVVLSYGNLGTFEDEDLFRSIELAGXILGRE 151 (346)
T ss_dssp HHHHHHHCCSEEEEESCCHHHHHHHHHHHTSCEEEECCCCTTCSCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCCCCEEEEeCCccchHHHHHHhcCCcEEEEecCccCcccHHHHHHHHHHHHHHcCCH
Confidence 4667778999999875433456666777787766431 1 45688888888864
No 57
>1p90_A NAFY protein, hypothetical protein; ribonuclease H motif, protein binding; 1.80A {Azotobacter vinelandii} SCOP: c.55.5.2
Probab=32.04 E-value=67 Score=25.75 Aligned_cols=30 Identities=20% Similarity=0.266 Sum_probs=27.2
Q ss_pred CCCeEEEeCCCCCHHHHHHHHHcCceEEeeC
Q 016953 284 AGANVILTTKGIDDMALKYFVEAGAIAVRRV 314 (380)
Q Consensus 284 ~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v 314 (380)
.++++|+|. +|.+.+...|.++||-++.-.
T Consensus 66 ~g~~vvi~~-~iG~~a~~~L~~~GI~v~~~~ 95 (145)
T 1p90_A 66 QDCQVLYVV-SIGGPAAAKVVRAGIHPLKKP 95 (145)
T ss_dssp TTCSEEEES-BCCHHHHHHHHHTTCEEEECT
T ss_pred CCCCEEEEC-CCCHHHHHHHHHcCCEEEEeC
Confidence 389999998 799999999999999999874
No 58
>2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel, eight parallel beta strands surrounded by eight alpha helices, lyase; 2.30A {Bacillus subtilis}
Probab=31.50 E-value=82 Score=29.17 Aligned_cols=65 Identities=11% Similarity=0.053 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHhCCe
Q 016953 260 PRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGAT 329 (380)
Q Consensus 260 ~~~l~~~~~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa~ 329 (380)
++++++|. ..+++++++.+.+.|+.+++...+- ...+.++.+.|+-++..-...+++.+.+. |..
T Consensus 222 p~~f~ef~---~p~~~~i~~~i~~~g~~~i~~~~G~-~~~l~~l~~~g~d~~~~d~~~d~~~~~~~-g~~ 286 (359)
T 2inf_A 222 QADYRTYI---KPVMNRIFSELAKENVPLIMFGVGA-SHLAGDWHDLPLDVVGLDWRLGIDEARSK-GIT 286 (359)
T ss_dssp HHHHHHHT---HHHHHHHHHHHGGGCSCEEEECTTC-GGGHHHHHTSSCSEEECCTTSCHHHHHHT-TCC
T ss_pred HHHHHHHh---HHHHHHHHHHHHHcCCcEEEEcCCc-HHHHHHHHHhCCCEEEeCCCCCHHHHHHc-CCC
Confidence 44555544 5788888999988777666655454 55777888899888866445678888888 764
No 59
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=30.69 E-value=1.5e+02 Score=22.18 Aligned_cols=52 Identities=12% Similarity=0.166 Sum_probs=37.6
Q ss_pred HHHHHHHHhCCCeEEEeCCCCCHH----HHHHHHHcCceEEe-eCChhHHHHHHHHhCCe
Q 016953 275 KERIEKLLKAGANVILTTKGIDDM----ALKYFVEAGAIAVR-RVRKEDMRHIAKATGAT 329 (380)
Q Consensus 275 ~~~v~~i~~~gv~lVi~~~~I~~~----al~~l~~~~I~vv~-~v~~~~l~~la~~tGa~ 329 (380)
++..+.|.+-.+.+||.+.+.++. ..+++..++|.++. .-++.+ |..++|-.
T Consensus 28 ~~v~kai~~gkaklVilA~D~~~~~~~~i~~~c~~~~ip~~~~~~s~~e---LG~A~Gk~ 84 (105)
T 3u5e_c 28 KSTVKSLRQGKSKLIIIAANTPVLRKSELEYYAMLSKTKVYYFQGGNNE---LGTAVGKL 84 (105)
T ss_dssp HHHHHHHHTTCCSEEEECTTSCHHHHHHHHHHHHHHTCEEEECSSCHHH---HHHHTTCS
T ss_pred HHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCCHHH---HHHHhCCc
Confidence 445667777789999999999874 45666778999995 455555 55666653
No 60
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=30.03 E-value=88 Score=24.11 Aligned_cols=49 Identities=14% Similarity=0.119 Sum_probs=35.8
Q ss_pred HHHHHHHhCCCeEEEeCCCCCHH-----HHHHHHHcCceEEeeCChhHHHHHHH
Q 016953 276 ERIEKLLKAGANVILTTKGIDDM-----ALKYFVEAGAIAVRRVRKEDMRHIAK 324 (380)
Q Consensus 276 ~~v~~i~~~gv~lVi~~~~I~~~-----al~~l~~~~I~vv~~v~~~~l~~la~ 324 (380)
...+.|.+..+.+|+.+.++++. ...++.+++|.++..-++.+|-+.+-
T Consensus 36 ~v~kai~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~eLG~a~G 89 (120)
T 1xbi_A 36 EVTKAVERGIAKLVIIAEDVKPEEVVAHLPYLCEEKGIPYAYVASKQDLGKAAG 89 (120)
T ss_dssp HHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHHHTCCEEEESCHHHHHHHTT
T ss_pred HHHHHHHcCCceEEEEcCCCChHHHHHHHHHHHHhcCCCEEEeCCHHHHHHHhC
Confidence 34566666788999999999774 45678888999887777766555443
No 61
>4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A*
Probab=29.54 E-value=1.1e+02 Score=27.34 Aligned_cols=63 Identities=11% Similarity=0.138 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCC----hhHHHHHHHHhCCeEcc
Q 016953 268 QREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVR----KEDMRHIAKATGATMVS 332 (380)
Q Consensus 268 ~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~----~~~l~~la~~tGa~ii~ 332 (380)
++|++++.+.++.|.+ .++.++=......+.+...++|.-++-.++ ..+|-.++.-.|+.++-
T Consensus 64 eeE~~Rv~pvi~~l~~--~~v~iSIDT~~~~Va~~al~aGa~iINDVs~g~~d~~m~~~va~~~~~~vl 130 (270)
T 4hb7_A 64 EEELNRVLPVVEAIVG--FDVKISVDTFRSEVAEACLKLGVDMINDQWAGLYDHRMFQIVAKYDAEIIL 130 (270)
T ss_dssp HHHHHHHHHHHHHHTT--SSSEEEEECSCHHHHHHHHHHTCCEEEETTTTSSCTHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHhhc--CCCeEEEECCCHHHHHHHHHhccceeccccccccchhHHHHHHHcCCCeEE
Confidence 4678889999999976 456777777778888888888988888764 35677777778888763
No 62
>2pw9_A Putative formate dehydrogenase accessory protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.10A {Desulfotalea psychrophila LSV54} SCOP: c.97.1.5
Probab=29.51 E-value=54 Score=29.41 Aligned_cols=41 Identities=20% Similarity=0.281 Sum_probs=34.3
Q ss_pred HHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCCh
Q 016953 276 ERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRK 316 (380)
Q Consensus 276 ~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~ 316 (380)
+++.|....|++++++...-...|.++..+.||+.+..++.
T Consensus 206 EmV~Kaa~aGIpvlvS~SApTslAV~lA~~~giTLiGf~R~ 246 (268)
T 2pw9_A 206 DMVLKCARIGIPIIMSRTSPSSLGLALAKRSGATLVAYSRP 246 (268)
T ss_dssp HHHHHHHHHTCCEEEESSCBCHHHHHHHHHHTCEEEEEEET
T ss_pred HHHHHHHHcCCCEEEEcccccHHHHHHHHHcCCEEEEEecC
Confidence 44777888899999999999999999999999998887653
No 63
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=27.63 E-value=1.2e+02 Score=23.52 Aligned_cols=48 Identities=15% Similarity=0.072 Sum_probs=35.3
Q ss_pred HHHHHHHhCCCeEEEeCCCCCHH-----HHHHHHHcCceEEeeCChhHHHHHH
Q 016953 276 ERIEKLLKAGANVILTTKGIDDM-----ALKYFVEAGAIAVRRVRKEDMRHIA 323 (380)
Q Consensus 276 ~~v~~i~~~gv~lVi~~~~I~~~-----al~~l~~~~I~vv~~v~~~~l~~la 323 (380)
+..+.|.+..+.+|+.+.+.++. ..+++.+++|.++..-++.+|-+.+
T Consensus 35 ~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~v~sk~eLG~a~ 87 (124)
T 2fc3_A 35 ETTKAVERGLAKLVVIAEDVDPPEIVMHLPLLCDEKKIPYVYVPSKKRLGEAA 87 (124)
T ss_dssp HHHHHHHTTCCSEEEEETTCSSGGGTTTHHHHHHHTTCCEEEESCHHHHHHHT
T ss_pred HHHHHHHcCCceEEEEcCCCChHHHHHHHHHHHHHcCCCEEEECCHHHHHHHh
Confidence 44566667788999999999763 4567888899988777776655443
No 64
>4hn9_A Iron complex transport system substrate-binding P; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.85A {Eubacterium eligens}
Probab=27.58 E-value=85 Score=28.57 Aligned_cols=51 Identities=18% Similarity=0.116 Sum_probs=37.0
Q ss_pred HHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeC--C----hhHHHHHHHHhCCe
Q 016953 278 IEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRV--R----KEDMRHIAKATGAT 329 (380)
Q Consensus 278 v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v--~----~~~l~~la~~tGa~ 329 (380)
+++|...+|+|||.... ++...+.|.+.||.++--- + .+.++.+++++|-.
T Consensus 109 ~E~i~al~PDLIi~~~~-~~~~~~~L~~~gipvv~~~~~~~~~~~~~i~~lg~~lg~e 165 (335)
T 4hn9_A 109 TEACVAATPDVVFLPMK-LKKTADTLESLGIKAVVVNPEDQSLLEECITLVGKITNNA 165 (335)
T ss_dssp HHHHHHTCCSEEEEEGG-GHHHHHHHHHTTCCEEEECCCSHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcCCCEEEEeCc-chhHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHHcCCH
Confidence 57888889999998765 4566777888887766431 1 35677888888863
No 65
>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus}
Probab=26.76 E-value=1.2e+02 Score=27.74 Aligned_cols=73 Identities=14% Similarity=0.057 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHhCCeEccccc
Q 016953 259 DPRELEKIRQREADMTKERIEKLLKA-GANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVSTFA 335 (380)
Q Consensus 259 ~~~~l~~~~~~E~~~l~~~v~~i~~~-gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa~ii~s~~ 335 (380)
+++++++|. +.+++++++.+++. |++++....+- ...+.++.+.|+-++..-...+++...+..+..+...++
T Consensus 207 sp~~f~ef~---~p~~k~i~~~i~~~~g~~~i~~~~g~-~~~l~~l~~~g~d~~~~d~~~dl~~~~~~~~~~l~Gn~d 280 (338)
T 2eja_A 207 SLEDYGEYV---YPYVNYLISELKDFSDTPVIYFFRGS-SSFIDLAVDYRADALSVDWSVDIPELFKIYDKGFQGNLE 280 (338)
T ss_dssp CHHHHHHHT---HHHHHHHHHHHHHHCCCCEEEEESSH-HHHHHHHTTSCCSEEECCTTSCHHHHHHHCCSEEECCBC
T ss_pred CHHHHHHHh---HHHHHHHHHHHhhcCCCCEEEEcCCc-HHHHHHHHHcCCCEEEeCCCCCHHHHHHhCCeEEEECCC
Confidence 355666654 57888888888876 77776655555 677888888887776543344666666654555555544
No 66
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=26.48 E-value=1.1e+02 Score=23.48 Aligned_cols=51 Identities=14% Similarity=0.238 Sum_probs=36.7
Q ss_pred HHHHHHHhCCCeEEEeCCCCCHH-----HHHHHHHcCceEEeeCChhHHHHHHHHhCCe
Q 016953 276 ERIEKLLKAGANVILTTKGIDDM-----ALKYFVEAGAIAVRRVRKEDMRHIAKATGAT 329 (380)
Q Consensus 276 ~~v~~i~~~gv~lVi~~~~I~~~-----al~~l~~~~I~vv~~v~~~~l~~la~~tGa~ 329 (380)
...+.|.+..+.+|+.+.+.++. ...++.+++|.++..-++.+|- +++|-.
T Consensus 36 ~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~sk~eLG---~a~G~~ 91 (120)
T 1vq8_F 36 ETTKSIERGSAELVFVAEDVQPEEIVMHIPELADEKGVPFIFVEQQDDLG---HAAGLE 91 (120)
T ss_dssp HHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHTTCCCEEEESCHHHHH---HHTTCS
T ss_pred HHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHhcCCCEEEECCHHHHH---HHhCCC
Confidence 44566666788999999999763 4567888899988777776655 455544
No 67
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}
Probab=25.55 E-value=1.2e+02 Score=23.47 Aligned_cols=52 Identities=13% Similarity=0.183 Sum_probs=37.1
Q ss_pred HHHHHHHHhCCCeEEEeCCCCCHH-----HHHHHHHcCceEEeeCChhHHHHHHHHhCCe
Q 016953 275 KERIEKLLKAGANVILTTKGIDDM-----ALKYFVEAGAIAVRRVRKEDMRHIAKATGAT 329 (380)
Q Consensus 275 ~~~v~~i~~~gv~lVi~~~~I~~~-----al~~l~~~~I~vv~~v~~~~l~~la~~tGa~ 329 (380)
+...+.+.+..+.+|+.+.+.++. ...++.++||.++..-++.+| .+++|-.
T Consensus 37 ~~v~kai~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~eL---G~a~Gk~ 93 (122)
T 3o85_A 37 NEALKQVNRGKAELVIIAADADPIEIVLHLPLACEDKGVPYVFIGSKNAL---GRACNVS 93 (122)
T ss_dssp HHHHHHHHTTCCSEEEEETTCSSGGGGTTHHHHHHTTTCCEEEESCHHHH---HHHTTCS
T ss_pred HHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECCHHHH---HHHhCCC
Confidence 344566667788999999999763 456678889998877776665 4555553
No 68
>3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel, cytoplasm, lyase, porphyrin biosynthesis; 2.80A {Shigella flexneri}
Probab=25.16 E-value=62 Score=29.88 Aligned_cols=66 Identities=21% Similarity=0.248 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC----CCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHhCCe
Q 016953 260 PRELEKIRQREADMTKERIEKLLKA----GANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGAT 329 (380)
Q Consensus 260 ~~~l~~~~~~E~~~l~~~v~~i~~~----gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa~ 329 (380)
++++++|. +.+++++++.+++. +++++...++. ...+.++.+.|+-++..-...+++...+..|..
T Consensus 216 p~~f~ef~---~p~~k~i~~~i~~~~~~~~~~ii~~~~g~-~~~l~~l~~~g~d~i~~d~~~dl~~~~~~~g~~ 285 (354)
T 3cyv_A 216 GRDYQQFS---LYYMHKIVDGLLRENDGRRVPVTLFTKGG-GQWLEAMAETGCDALGLDWTTDIADARRRVGNK 285 (354)
T ss_dssp HHHHHHHT---HHHHHHHHHHSCSEETTEECCEEEECTTT-TTTHHHHHTTSCSEEECCTTSCHHHHHHHHTTT
T ss_pred HHHHHHHh---HHHHHHHHHHHHHhcCCCCCCEEEECCCH-HHHHHHHHhcCCCEEEeCCCCCHHHHHHHhCCC
Confidence 55565554 57888888888876 36677777776 556778888998888754467888888888864
No 69
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=25.02 E-value=86 Score=24.29 Aligned_cols=39 Identities=13% Similarity=0.156 Sum_probs=25.8
Q ss_pred HHHHHHHHHhCCCeEEEeCCCC-CHHHHHHHHHcCceEEe
Q 016953 274 TKERIEKLLKAGANVILTTKGI-DDMALKYFVEAGAIAVR 312 (380)
Q Consensus 274 l~~~v~~i~~~gv~lVi~~~~I-~~~al~~l~~~~I~vv~ 312 (380)
..+.++.+.+.|++.|+.+.++ ++.+.+.+.++||-++.
T Consensus 71 v~~~v~e~~~~g~k~v~~~~G~~~~e~~~~a~~~Girvv~ 110 (122)
T 3ff4_A 71 QLSEYNYILSLKPKRVIFNPGTENEELEEILSENGIEPVI 110 (122)
T ss_dssp HGGGHHHHHHHCCSEEEECTTCCCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHhcCCCEEEECCCCChHHHHHHHHHcCCeEEC
Confidence 4555666777788766666665 56666777777776664
No 70
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=24.16 E-value=1e+02 Score=23.62 Aligned_cols=51 Identities=16% Similarity=0.165 Sum_probs=36.1
Q ss_pred HHHHHHHhCCCeEEEeCCCCCHH-----HHHHHHHcCceEEeeCChhHHHHHHHHhCCe
Q 016953 276 ERIEKLLKAGANVILTTKGIDDM-----ALKYFVEAGAIAVRRVRKEDMRHIAKATGAT 329 (380)
Q Consensus 276 ~~v~~i~~~gv~lVi~~~~I~~~-----al~~l~~~~I~vv~~v~~~~l~~la~~tGa~ 329 (380)
...+.|.+..+.+|+.+.+.++. ...++.+++|.++..-++.+|- .++|-.
T Consensus 34 ~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~sk~eLG---~a~G~~ 89 (119)
T 1rlg_A 34 ETTKAVERGLAKLVYIAEDVDPPEIVAHLPLLCEEKNVPYIYVKSKNDLG---RAVGIE 89 (119)
T ss_dssp HHHHHHTTTCCSEEEEESCCSCSTTTTHHHHHHHHHTCCEEEESCHHHHH---HHTTCS
T ss_pred HHHHHHHcCCCcEEEEeCCCChHHHHHHHHHHHHHcCCCEEEeCCHHHHH---HHhCCC
Confidence 44556666678999999988653 4567888899988777776655 455543
No 71
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=23.90 E-value=2.2e+02 Score=21.28 Aligned_cols=52 Identities=10% Similarity=0.121 Sum_probs=36.2
Q ss_pred HHHHHHHHhCCCeEEEeCCCCCHHHH----HHHHHcCceEEee-CChhHHHHHHHHhCCe
Q 016953 275 KERIEKLLKAGANVILTTKGIDDMAL----KYFVEAGAIAVRR-VRKEDMRHIAKATGAT 329 (380)
Q Consensus 275 ~~~v~~i~~~gv~lVi~~~~I~~~al----~~l~~~~I~vv~~-v~~~~l~~la~~tGa~ 329 (380)
....+.|.+-.+.+||.+.+.++... +++.+++|.++.. -++.+| ..++|-.
T Consensus 27 ~~v~kai~~gka~lViiA~D~~~~~~~~l~~~c~~~~Vp~~~~~~sk~eL---G~a~G~~ 83 (110)
T 3cpq_A 27 KRTIKFVKHGEGKLVVLAGNIPKDLEEDVKYYAKLSNIPVYQHKITSLEL---GAVCGKP 83 (110)
T ss_dssp HHHHHHHHTTCCSEEEECTTCBHHHHHHHHHHHHHTTCCEEECCSCHHHH---HHHTTCS
T ss_pred HHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCHHHH---HHHhCCc
Confidence 34456677778999999999986655 4566779998776 566554 4555543
No 72
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=23.43 E-value=2.1e+02 Score=21.66 Aligned_cols=60 Identities=18% Similarity=0.241 Sum_probs=40.0
Q ss_pred HHHHHHHHHhCCCeEEEeCCC--------CCHHHHHHHHHcCce----EEeeC--ChhHHHHHHHHhCCeEcccc
Q 016953 274 TKERIEKLLKAGANVILTTKG--------IDDMALKYFVEAGAI----AVRRV--RKEDMRHIAKATGATMVSTF 334 (380)
Q Consensus 274 l~~~v~~i~~~gv~lVi~~~~--------I~~~al~~l~~~~I~----vv~~v--~~~~l~~la~~tGa~ii~s~ 334 (380)
.+..++.+++.+. |++..++ ....|.++|.+.||- ....+ ..+..+.+...+|.+-++.+
T Consensus 5 ~~~~v~~~i~~~~-Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~sg~~tvP~v 78 (121)
T 3gx8_A 5 IRKAIEDAIESAP-VVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFSEWPTIPQL 78 (121)
T ss_dssp HHHHHHHHHHSCS-EEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHHTCCSSCEE
T ss_pred HHHHHHHHhccCC-EEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHhCCCCCCeE
Confidence 4667788888775 5555444 457899999999985 23334 34455777788887655544
No 73
>4exq_A UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid, NIH, SBRI, heme biosynthesis, structural GENO niaid; 1.65A {Burkholderia thailandensis}
Probab=23.39 E-value=48 Score=31.09 Aligned_cols=103 Identities=12% Similarity=0.161 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC----CCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHhCCe--Eccc
Q 016953 260 PRELEKIRQREADMTKERIEKLLKA----GANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGAT--MVST 333 (380)
Q Consensus 260 ~~~l~~~~~~E~~~l~~~v~~i~~~----gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa~--ii~s 333 (380)
++++++|. +.+++++++.+++. +++++.+.++. ...+..+.+.|+-++..-...+++...+..|.+ +...
T Consensus 226 p~~f~ef~---~Py~k~i~~~l~~~~~g~~~pvi~f~~g~-~~~l~~l~~~g~d~i~~d~~~dl~~ak~~~g~~~~l~Gn 301 (368)
T 4exq_A 226 DGAYQRFS---LDYIRRVVAQLKREHDGARVPAIAFTKGG-GLWLEDLAATGVDAVGLDWTVNLGRARERVAGRVALQGN 301 (368)
T ss_dssp TTHHHHHT---HHHHHHHHHTSCCEETTEECCEEEEETTC-GGGHHHHHTSSCSEEECCTTSCHHHHHHHHTTSSEEEEE
T ss_pred HHHHHHHh---HHHHHHHHHHHHHhcCCCCCcEEEEcCCc-HHHHHHHHHhCCCEEeeCCCCCHHHHHHHhCCCEEEEEC
Confidence 34555554 57788888888764 47777666665 466777888998887655566888888888865 4554
Q ss_pred cccccCCcCCCCCCcccceeEEE------EEEc-CeeEEEEEcCCCCC
Q 016953 334 FADMEGEETFDSSLLGSADEVVE------ERVA-DDDVIMIKGTKTTS 374 (380)
Q Consensus 334 ~~~l~~~~~~~~~~lG~~~~v~~------~~ig-~~~~~~f~g~~~~~ 374 (380)
++.. -..|+-+.++. ..++ +..|++=-||.-+.
T Consensus 302 ldp~--------~L~gt~e~I~~~v~~~l~~~g~~~g~I~n~Ghgi~p 341 (368)
T 4exq_A 302 LDPT--------ILFAPPEAIRAEARAVLDSYGNHPGHVFNLGHGISQ 341 (368)
T ss_dssp ECGG--------GGGSCHHHHHHHHHHHHHHHCSCSCEEEEESSCCCT
T ss_pred CCHH--------HhCCCHHHHHHHHHHHHHHhCCCCCEEEeCCCCCCC
Confidence 4321 12454444332 1123 24677777776543
No 74
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=23.37 E-value=1.8e+02 Score=26.29 Aligned_cols=58 Identities=19% Similarity=0.190 Sum_probs=43.3
Q ss_pred HHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHhCCeEcc
Q 016953 275 KERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMVS 332 (380)
Q Consensus 275 ~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa~ii~ 332 (380)
.+.++.+.+.|+++|....+.+....+.+.+.|+.++-.+...+.-+.+...|+..+.
T Consensus 86 ~~~~~~~~~~g~d~V~~~~g~p~~~~~~l~~~gi~vi~~v~t~~~a~~~~~~GaD~i~ 143 (328)
T 2gjl_A 86 AEYRAAIIEAGIRVVETAGNDPGEHIAEFRRHGVKVIHKCTAVRHALKAERLGVDAVS 143 (328)
T ss_dssp HHHHHHHHHTTCCEEEEEESCCHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHhcCCCEEEEcCCCcHHHHHHHHHcCCCEEeeCCCHHHHHHHHHcCCCEEE
Confidence 3456777788999998887777888888999998888766554444456667887764
No 75
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=23.09 E-value=1.9e+02 Score=26.26 Aligned_cols=57 Identities=14% Similarity=0.244 Sum_probs=41.7
Q ss_pred HHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCChhHHHHHHHHhCCeEc
Q 016953 275 KERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHIAKATGATMV 331 (380)
Q Consensus 275 ~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~~~l~~la~~tGa~ii 331 (380)
.+.++.+.+.|+++|....+.+....+.+.+.++.++..+...+.-+-+.-.|+..+
T Consensus 92 ~~~~~~~~~~g~d~V~l~~g~p~~~~~~l~~~g~~v~~~v~s~~~a~~a~~~GaD~i 148 (326)
T 3bo9_A 92 DDLVKVCIEEKVPVVTFGAGNPTKYIRELKENGTKVIPVVASDSLARMVERAGADAV 148 (326)
T ss_dssp HHHHHHHHHTTCSEEEEESSCCHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSCE
T ss_pred HHHHHHHHHCCCCEEEECCCCcHHHHHHHHHcCCcEEEEcCCHHHHHHHHHcCCCEE
Confidence 445677778899999988888888899999999888876544433334455676655
No 76
>3gfv_A Uncharacterized ABC transporter solute-binding protein YCLQ; alpha-beta-sandwich, periplasmic binding protein fold (PBP fold); 1.75A {Bacillus subtilis subsp}
Probab=22.66 E-value=1e+02 Score=27.38 Aligned_cols=51 Identities=18% Similarity=0.225 Sum_probs=36.0
Q ss_pred HHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCC--------hhHHHHHHHHhCCe
Q 016953 278 IEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVR--------KEDMRHIAKATGAT 329 (380)
Q Consensus 278 v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~--------~~~l~~la~~tGa~ 329 (380)
+++|...+|+|||... .++...+.|.+.+..++-... .+.++.+++++|-.
T Consensus 88 ~E~i~~l~PDlIi~~~-~~~~~~~~L~~~~p~v~~~~~~~~~~~~~~~~i~~lg~~~g~~ 146 (303)
T 3gfv_A 88 FDKVAELDPDLIIISA-RQSESYKEFSKIAPTIYLGVDTAKYMESFKSDAETIGKIFDKE 146 (303)
T ss_dssp HHHHHHTCCSEEEECG-GGGGGHHHHHHHSCEEECCCCGGGHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhCCCCEEEEcC-cchhHHHHHHhhCCEEEEcCCCcchHHHHHHHHHHHHHHhCCh
Confidence 4778889999999864 456667778877755443332 35578889988864
No 77
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=22.37 E-value=1.7e+02 Score=26.02 Aligned_cols=54 Identities=11% Similarity=0.103 Sum_probs=39.9
Q ss_pred HHHHHHHhCCCeEEEeCCCCCH-----HHHHHHHHcCceEEeeCChhHHHHHHHHhCCe
Q 016953 276 ERIEKLLKAGANVILTTKGIDD-----MALKYFVEAGAIAVRRVRKEDMRHIAKATGAT 329 (380)
Q Consensus 276 ~~v~~i~~~gv~lVi~~~~I~~-----~al~~l~~~~I~vv~~v~~~~l~~la~~tGa~ 329 (380)
..++.|.+..+.+||.+.++++ ....+|.++||.++.--+..+|-..+-.-++.
T Consensus 142 eV~KaIekgkAkLVIIA~DasP~ei~~~Lp~LC~~~~VPyi~v~sk~eLG~A~Gkk~~s 200 (266)
T 2zkr_f 142 TVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGHLVHRKTCT 200 (266)
T ss_dssp HHHHHHHTTCCSEEEEESCCSSSTTTTHHHHHHHHHTCCEEEESCHHHHHHHHTSSCCS
T ss_pred HHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHhcCCCEEEECCHHHHHHHhCCCCce
Confidence 4456677778899999999987 45678899999988887776665555444344
No 78
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=22.01 E-value=1.6e+02 Score=26.33 Aligned_cols=32 Identities=6% Similarity=0.078 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHH
Q 016953 273 MTKERIEKLLKAGANVILTTKGIDDMALKYFV 304 (380)
Q Consensus 273 ~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~ 304 (380)
.+.++++.+++.++.+||++..+++...+.++
T Consensus 225 ~l~~l~~~ik~~~v~~If~e~~~~~~~~~~ia 256 (291)
T 1pq4_A 225 ELKQLIDTAKENNLTMVFGETQFSTKSSEAIA 256 (291)
T ss_dssp HHHHHHHHHHTTTCCEEEEETTSCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCChHHHHHHH
Confidence 35677888999999999999999887777653
No 79
>2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A*
Probab=20.67 E-value=2.2e+02 Score=25.94 Aligned_cols=64 Identities=20% Similarity=0.261 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCCh----hHHHHHHHHhCCeEcc
Q 016953 268 QREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRK----EDMRHIAKATGATMVS 332 (380)
Q Consensus 268 ~~E~~~l~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~----~~l~~la~~tGa~ii~ 332 (380)
++|.+++.+.++.|.+. .++.|+=......+.....+.|.-.+-.++. .+|-.++.-.|+.++-
T Consensus 67 ~eE~~Rv~pvI~~l~~~-~~vpiSIDT~~~~Va~aAl~aGa~iINDVsg~~~d~~m~~v~a~~~~~vvl 134 (314)
T 2vef_A 67 EEEIQRVVPVIKAIRKE-SDVLISIDTWKSQVAEAALAAGADLVNDITGLMGDEKMPHVVAEARAQVVI 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHH-CCCEEEEECSCHHHHHHHHHTTCCEEEETTTTCSCTTHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHHHHhh-CCceEEEeCCCHHHHHHHHHcCCCEEEECCCCCCChHHHHHHHHcCCCEEE
Confidence 56788899999998864 2455666677788888888889988887765 5788888889988864
No 80
>3pry_A Heat shock protein HSP 90-beta; structural genomics, structural genomics consortium, SGC, HE protein, chaperone; 2.28A {Homo sapiens} SCOP: d.14.1.8
Probab=20.58 E-value=41 Score=30.19 Aligned_cols=42 Identities=24% Similarity=0.336 Sum_probs=34.7
Q ss_pred HHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCCh
Q 016953 275 KERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRK 316 (380)
Q Consensus 275 ~~~v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~~ 316 (380)
-+.++.+.+.|..|++....||+.+.+.|.+.+=--+..|.+
T Consensus 215 sp~~E~~k~kg~EVL~l~d~iDe~~i~~L~ef~gk~l~sv~k 256 (268)
T 3pry_A 215 SAFVERVRKRGFEVVYMTEPIDEYCVQQLKEFDGKSLVSVTK 256 (268)
T ss_dssp CHHHHHHHTTTCCEEECCSTTHHHHHHHHCEETTEEEEETTC
T ss_pred ChHHHHHHHcCceEEEeCCchHHHHHHHHHhcCCceeeeccc
Confidence 567899999999999999999999999998876444444444
No 81
>2chu_A CEUE, enterochelin uptake periplasmic binding protein; iron, mecam, SELF assembly, siderophore; HET: ECA; 2.40A {Campylobacter jejuni} SCOP: c.92.2.4
Probab=20.07 E-value=1.7e+02 Score=25.85 Aligned_cols=51 Identities=12% Similarity=0.148 Sum_probs=36.5
Q ss_pred HHHHHhCCCeEEEeCCCCCHHHHHHHHHcCceEEeeCC--------hhHHHHHHHHhCCe
Q 016953 278 IEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVR--------KEDMRHIAKATGAT 329 (380)
Q Consensus 278 v~~i~~~gv~lVi~~~~I~~~al~~l~~~~I~vv~~v~--------~~~l~~la~~tGa~ 329 (380)
+|+|.+.+|+|||.... ++...+.|.+.+..++-... .+.++.+++++|-.
T Consensus 88 ~E~i~~l~PDLIi~~~~-~~~~~~~L~~~~p~v~~~~~~~~~~~~~~~~i~~lg~~~g~~ 146 (296)
T 2chu_A 88 FEAINALKPDLIIISGR-QSKFYDKLKEIAPTLFVGLDNANFLSSFENNVLSVAKLYGLE 146 (296)
T ss_dssp HHHHHHTCCSEEEECTT-TGGGHHHHHTTSCEEECCCCTTSHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCCCEEEEcCc-cHHHHHHHHhhCCEEEEecCCccchHHHHHHHHHHHHHhCcH
Confidence 57788899999998653 45566778887766653321 45688889999864
Done!