Query 016954
Match_columns 380
No_of_seqs 336 out of 1688
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 06:32:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016954.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016954hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xqn_T Testin, TESS; metal-bin 99.9 2E-25 6.8E-30 189.4 7.8 121 112-245 2-124 (126)
2 2jtn_A LIM domain-binding prot 99.9 6.1E-25 2.1E-29 198.2 10.6 124 110-245 57-180 (182)
3 2rgt_A Fusion of LIM/homeobox 99.9 3.2E-25 1.1E-29 197.9 7.5 126 111-248 4-129 (169)
4 2xjy_A Rhombotin-2; oncoprotei 99.9 2.9E-25 9.8E-30 189.5 6.6 121 113-245 2-126 (131)
5 1b8t_A Protein (CRP1); LIM dom 99.9 3E-24 1E-28 195.3 6.9 132 111-258 5-184 (192)
6 1rut_X Flinc4, fusion protein 99.9 2.7E-24 9.3E-29 195.1 4.5 123 112-246 4-130 (188)
7 2cup_A Skeletal muscle LIM-pro 99.8 1.2E-21 4.1E-26 159.7 7.3 98 111-219 3-101 (101)
8 1m3v_A FLIN4, fusion of the LI 99.8 3.8E-20 1.3E-24 156.6 2.7 109 111-247 3-115 (122)
9 1j2o_A FLIN2, fusion of rhombo 99.7 4E-18 1.4E-22 142.4 5.9 103 112-246 2-106 (114)
10 1iml_A CRIP, cysteine rich int 99.6 2E-16 6.8E-21 122.4 4.6 71 114-184 1-72 (76)
11 1a7i_A QCRP2 (LIM1); LIM domai 99.6 1.3E-16 4.6E-21 124.8 3.1 74 110-183 4-77 (81)
12 2dar_A PDZ and LIM domain prot 99.6 1.2E-15 3.9E-20 122.0 6.5 68 110-178 22-89 (90)
13 2cu8_A Cysteine-rich protein 2 99.6 8.2E-16 2.8E-20 118.9 5.2 70 109-178 5-75 (76)
14 1x68_A FHL5 protein; four-and- 99.6 1.8E-15 6.2E-20 117.0 5.6 69 112-180 4-75 (76)
15 2dj7_A Actin-binding LIM prote 99.6 1.2E-15 4.2E-20 119.6 4.6 67 111-178 13-79 (80)
16 2cur_A Skeletal muscle LIM-pro 99.6 1.4E-15 4.9E-20 115.2 4.3 67 111-178 3-69 (69)
17 2d8z_A Four and A half LIM dom 99.6 2E-15 6.9E-20 114.6 4.5 67 111-178 3-69 (70)
18 2d8y_A Eplin protein; LIM doma 99.5 8.7E-15 3E-19 117.1 6.9 73 111-183 13-85 (91)
19 1wyh_A SLIM 2, skeletal muscle 99.5 3.6E-15 1.2E-19 113.7 4.1 67 112-178 4-71 (72)
20 1x4k_A Skeletal muscle LIM-pro 99.5 4.9E-15 1.7E-19 113.0 4.6 67 112-178 4-71 (72)
21 1x4l_A Skeletal muscle LIM-pro 99.5 5.9E-15 2E-19 112.8 4.7 66 111-176 3-71 (72)
22 2ehe_A Four and A half LIM dom 99.5 8.7E-15 3E-19 114.6 5.7 70 109-178 11-81 (82)
23 1nyp_A Pinch protein; LIM doma 99.5 3.9E-15 1.3E-19 111.8 3.1 63 112-175 4-66 (66)
24 1x62_A C-terminal LIM domain p 99.5 5E-15 1.7E-19 115.4 3.6 66 111-177 13-78 (79)
25 1g47_A Pinch protein; LIM doma 99.5 7E-15 2.4E-19 113.6 4.2 67 111-177 9-76 (77)
26 2dlo_A Thyroid receptor-intera 99.5 1.2E-14 4.2E-19 113.6 5.6 67 111-178 13-80 (81)
27 1x64_A Alpha-actinin-2 associa 99.5 1.8E-14 6E-19 114.8 6.6 67 110-177 22-88 (89)
28 2ehe_A Four and A half LIM dom 99.5 7.6E-15 2.6E-19 114.9 4.2 81 159-254 1-81 (82)
29 1x3h_A Leupaxin; paxillin fami 99.5 9.8E-15 3.3E-19 113.7 4.7 69 109-178 11-79 (80)
30 2cuq_A Four and A half LIM dom 99.5 1.7E-14 5.7E-19 112.3 5.6 69 109-178 11-79 (80)
31 2cuq_A Four and A half LIM dom 99.5 2.4E-14 8.1E-19 111.5 6.0 79 159-254 1-79 (80)
32 2d8x_A Protein pinch; LIM doma 99.5 1.2E-14 4.3E-19 110.3 4.1 66 111-177 3-68 (70)
33 2co8_A NEDD9 interacting prote 99.5 4.5E-14 1.5E-18 111.0 6.4 68 110-177 12-81 (82)
34 1x3h_A Leupaxin; paxillin fami 99.5 3.6E-14 1.2E-18 110.5 5.6 79 159-254 1-79 (80)
35 1x6a_A LIMK-2, LIM domain kina 99.5 4E-14 1.4E-18 110.5 5.5 75 159-246 1-75 (81)
36 2dlo_A Thyroid receptor-intera 99.5 6.6E-14 2.2E-18 109.4 6.1 79 159-254 2-80 (81)
37 1x63_A Skeletal muscle LIM-pro 99.4 6.8E-14 2.3E-18 109.4 5.9 69 109-177 11-80 (82)
38 2cor_A Pinch protein; LIM doma 99.4 3.5E-14 1.2E-18 110.8 4.2 65 111-177 13-77 (79)
39 1x61_A Thyroid receptor intera 99.4 4.8E-14 1.6E-18 107.5 4.4 68 111-179 3-71 (72)
40 2egq_A FHL1 protein; LIM domai 99.4 6.3E-14 2.1E-18 108.3 4.9 73 159-244 1-76 (77)
41 1b8t_A Protein (CRP1); LIM dom 99.4 9.4E-14 3.2E-18 125.9 6.4 74 111-184 113-186 (192)
42 1wig_A KIAA1808 protein; LIM d 99.4 5.6E-14 1.9E-18 108.0 4.1 63 111-174 3-66 (73)
43 1x63_A Skeletal muscle LIM-pro 99.4 2.4E-13 8.1E-18 106.3 5.7 80 159-253 1-80 (82)
44 2l3k_A Rhombotin-2, linker, LI 99.4 2.8E-13 9.5E-18 114.4 5.6 73 114-186 9-83 (123)
45 3f6q_B LIM and senescent cell 99.4 2.5E-13 8.7E-18 103.0 4.1 63 111-173 9-72 (72)
46 2l4z_A DNA endonuclease RBBP8, 99.4 3E-13 1E-17 114.5 4.7 63 111-173 59-123 (123)
47 1x6a_A LIMK-2, LIM domain kina 99.4 2.8E-13 9.4E-18 105.7 4.1 68 109-177 11-80 (81)
48 2iyb_E Testin, TESS, TES; LIM 99.3 4.3E-13 1.5E-17 100.6 3.2 59 113-171 2-64 (65)
49 2egq_A FHL1 protein; LIM domai 99.3 6.9E-13 2.4E-17 102.4 4.3 62 109-170 11-76 (77)
50 1v6g_A Actin binding LIM prote 99.3 1.9E-12 6.3E-17 101.1 5.8 73 160-246 2-74 (81)
51 2xqn_T Testin, TESS; metal-bin 99.2 1.6E-12 5.3E-17 109.7 0.5 112 171-313 1-123 (126)
52 2jtn_A LIM domain-binding prot 99.2 1.9E-11 6.4E-16 109.8 5.1 122 159-312 43-178 (182)
53 1v6g_A Actin binding LIM prote 99.1 2E-11 7E-16 95.1 3.8 61 111-172 13-74 (81)
54 1m3v_A FLIN4, fusion of the LI 99.1 1.6E-11 5.5E-16 103.3 2.3 110 171-314 3-113 (122)
55 1wig_A KIAA1808 protein; LIM d 99.1 7.9E-11 2.7E-15 90.3 5.3 63 170-246 2-64 (73)
56 1x68_A FHL5 protein; four-and- 99.0 8.1E-11 2.8E-15 90.6 3.6 71 170-255 2-74 (76)
57 2dar_A PDZ and LIM domain prot 99.0 2.6E-10 8.8E-15 90.7 6.2 76 162-254 14-89 (90)
58 2cup_A Skeletal muscle LIM-pro 99.0 6.6E-11 2.3E-15 95.8 2.7 74 171-259 3-76 (101)
59 2d8z_A Four and A half LIM dom 99.0 2.5E-10 8.5E-15 86.2 4.9 68 170-254 2-69 (70)
60 1rut_X Flinc4, fusion protein 99.0 1.4E-10 4.7E-15 104.7 4.1 67 115-181 71-139 (188)
61 1x4l_A Skeletal muscle LIM-pro 99.0 3.5E-10 1.2E-14 86.0 5.7 68 171-252 3-71 (72)
62 2cur_A Skeletal muscle LIM-pro 99.0 2.6E-10 8.9E-15 86.0 4.9 67 171-254 3-69 (69)
63 1x4k_A Skeletal muscle LIM-pro 99.0 3.5E-10 1.2E-14 85.8 5.2 70 170-254 2-71 (72)
64 2xjy_A Rhombotin-2; oncoprotei 99.0 1.4E-10 4.8E-15 98.2 2.7 61 115-175 68-130 (131)
65 1wyh_A SLIM 2, skeletal muscle 99.0 4E-10 1.4E-14 85.4 4.6 70 170-254 2-71 (72)
66 2cu8_A Cysteine-rich protein 2 98.9 1.2E-09 4.2E-14 83.8 5.4 69 170-254 6-75 (76)
67 2l3k_A Rhombotin-2, linker, LI 98.9 4.9E-10 1.7E-14 94.3 2.8 75 168-256 1-77 (123)
68 1iml_A CRIP, cysteine rich int 98.9 1.1E-09 3.7E-14 84.2 4.3 68 174-257 1-69 (76)
69 1x61_A Thyroid receptor intera 98.9 1.9E-09 6.5E-14 81.8 5.5 64 171-247 3-66 (72)
70 2rgt_A Fusion of LIM/homeobox 98.9 2.2E-10 7.4E-15 101.6 -0.2 111 173-315 6-127 (169)
71 1nyp_A Pinch protein; LIM doma 98.9 9.8E-10 3.4E-14 82.0 3.2 61 170-245 2-62 (66)
72 1a7i_A QCRP2 (LIM1); LIM domai 98.8 1E-09 3.4E-14 85.4 3.1 69 172-256 6-74 (81)
73 1g47_A Pinch protein; LIM doma 98.8 1.8E-09 6.2E-14 82.9 4.5 68 171-253 9-76 (77)
74 1j2o_A FLIN2, fusion of rhombo 98.8 1.7E-09 5.7E-14 89.9 4.3 101 173-313 3-104 (114)
75 2iyb_E Testin, TESS, TES; LIM 98.8 1.5E-09 5.1E-14 81.1 3.5 61 172-245 1-64 (65)
76 3f6q_B LIM and senescent cell 98.8 1.9E-09 6.5E-14 81.3 4.0 65 168-245 6-70 (72)
77 2d8x_A Protein pinch; LIM doma 98.8 3.6E-09 1.2E-13 79.9 4.7 60 172-246 4-63 (70)
78 2dj7_A Actin-binding LIM prote 98.8 4.5E-09 1.5E-13 81.9 5.1 65 173-254 15-79 (80)
79 2cor_A Pinch protein; LIM doma 98.8 6.2E-09 2.1E-13 80.8 5.2 66 170-253 12-77 (79)
80 2d8y_A Eplin protein; LIM doma 98.8 6.8E-09 2.3E-13 82.6 5.2 69 171-255 13-81 (91)
81 2l4z_A DNA endonuclease RBBP8, 98.7 5.8E-09 2E-13 88.0 4.7 63 170-245 58-121 (123)
82 1x64_A Alpha-actinin-2 associa 98.7 7.1E-09 2.4E-13 82.1 4.9 65 172-253 24-88 (89)
83 1x62_A C-terminal LIM domain p 98.7 4.4E-09 1.5E-13 81.5 2.2 59 173-246 15-73 (79)
84 2co8_A NEDD9 interacting prote 98.6 2.2E-08 7.7E-13 78.2 4.8 61 173-246 15-76 (82)
85 1zfo_A LAsp-1; LIM domain, zin 97.5 2.8E-05 9.6E-10 49.6 1.1 29 113-141 3-31 (31)
86 1q0v_A Hydrophilic protein; ha 93.9 0.042 1.4E-06 42.4 3.5 46 42-87 9-66 (81)
87 2d3g_P Ubiquitin interacting m 90.0 0.15 5.1E-06 30.5 1.8 23 43-65 2-24 (26)
88 1zfo_A LAsp-1; LIM domain, zin 83.6 0.27 9.4E-06 30.7 0.5 29 173-213 3-31 (31)
89 4ap4_A E3 ubiquitin ligase RNF 82.9 0.4 1.4E-05 39.0 1.3 86 159-259 32-123 (133)
90 2klz_A Ataxin-3; UIM, ubiquiti 74.5 1.3 4.3E-05 30.7 1.5 39 42-91 4-42 (52)
91 2ysm_A Myeloid/lymphoid or mix 74.0 11 0.00039 29.9 7.5 97 112-244 6-104 (111)
92 2kwj_A Zinc finger protein DPF 72.8 10 0.00035 30.6 7.0 86 126-244 21-108 (114)
93 2w15_A Zinc metalloproteinase 65.7 4.3 0.00015 35.9 3.5 26 344-369 123-148 (202)
94 1atl_A Atrolysin C; metalloend 65.1 4.4 0.00015 35.8 3.5 26 344-369 123-148 (202)
95 3cqb_A Probable protease HTPX 64.6 3.2 0.00011 33.1 2.2 19 352-370 78-96 (107)
96 2ect_A Ring finger protein 126 64.3 3.8 0.00013 30.1 2.5 47 213-259 16-62 (78)
97 1qua_A Acutolysin-C, hemorrhag 63.7 4.9 0.00017 35.3 3.5 26 344-369 122-147 (197)
98 1iym_A EL5; ring-H2 finger, ub 62.7 6.8 0.00023 26.4 3.4 46 213-258 6-52 (55)
99 1kuf_A Atrolysin E, metallopro 62.7 5.2 0.00018 35.4 3.5 26 344-369 125-150 (203)
100 1bud_A Protein (acutolysin A); 62.3 5.4 0.00018 35.0 3.5 26 344-369 120-145 (197)
101 1yp1_A FII; FII hydrolase; 1.9 61.9 5.5 0.00019 35.2 3.5 26 344-369 122-147 (202)
102 3a1q_C Ubiquitin interaction m 59.8 3.3 0.00011 27.5 1.2 40 43-88 5-44 (45)
103 2lva_A Ubiquitin carboxyl-term 63.4 2 6.8E-05 35.6 0.0 24 38-61 89-112 (129)
104 2rr9_C Putative uncharacterize 58.7 4.3 0.00015 27.1 1.6 43 44-92 3-45 (46)
105 4dd8_A Disintegrin and metallo 58.3 6.2 0.00021 35.0 3.2 25 345-369 121-145 (208)
106 2i47_A ADAM 17; TACE-inhibitor 58.2 6.3 0.00022 36.8 3.4 26 344-369 171-200 (288)
107 1q0v_A Hydrophilic protein; ha 57.3 10 0.00035 29.0 3.8 21 42-62 52-72 (81)
108 1jm7_B BARD1, BRCA1-associated 57.3 10 0.00035 30.2 4.1 27 159-185 41-67 (117)
109 2djb_A Polycomb group ring fin 53.7 7.2 0.00025 28.2 2.3 46 141-186 16-63 (72)
110 2dw0_A Catrocollastatin; apopt 53.4 8.3 0.00028 38.2 3.5 26 344-369 124-149 (419)
111 2kiz_A E3 ubiquitin-protein li 53.3 5.3 0.00018 28.5 1.6 47 213-259 15-61 (69)
112 2ero_A VAP-1, vascular apoptos 52.9 7.9 0.00027 38.5 3.2 26 344-369 133-158 (427)
113 2jny_A Uncharacterized BCR; st 52.0 1 3.5E-05 33.4 -2.6 51 213-291 11-61 (67)
114 2ysl_A Tripartite motif-contai 52.0 7.7 0.00026 27.8 2.3 27 160-186 39-70 (73)
115 3dwb_A ECE-1, endothelin-conve 51.8 4.6 0.00016 42.5 1.4 15 356-370 500-514 (670)
116 2e3x_A Coagulation factor X-ac 51.5 8.7 0.0003 38.2 3.3 26 344-369 126-151 (427)
117 3c37_A Peptidase, M48 family; 50.9 4.8 0.00016 37.0 1.2 26 345-370 83-113 (253)
118 2ep4_A Ring finger protein 24; 50.8 5.5 0.00019 28.8 1.3 47 213-259 16-62 (74)
119 2ddf_A ADAM 17; hydrolase; HET 50.3 6.9 0.00024 35.8 2.2 20 350-369 173-194 (257)
120 2jsd_A Matrix metalloproteinas 48.9 6.1 0.00021 33.4 1.5 12 357-368 108-119 (160)
121 2ecm_A Ring finger and CHY zin 48.8 7.9 0.00027 26.0 1.8 46 213-258 6-52 (55)
122 1r1h_A Neprilysin; enkephalina 48.2 6.1 0.00021 41.7 1.6 15 356-370 523-537 (696)
123 3zuk_A Endopeptidase, peptidas 47.1 6.1 0.00021 42.0 1.4 15 356-370 522-536 (699)
124 1bor_A Transcription factor PM 46.9 21 0.00071 24.4 3.8 26 160-186 25-50 (56)
125 1t1h_A Gspef-atpub14, armadill 46.1 13 0.00046 26.9 2.8 47 139-186 7-56 (78)
126 2ecy_A TNF receptor-associated 45.7 7.1 0.00024 27.6 1.2 28 159-186 33-63 (66)
127 1r55_A ADAM 33; metalloproteas 45.5 14 0.00049 32.8 3.4 15 355-369 134-148 (214)
128 2rjp_A Adamts-4; metalloprotea 45.0 12 0.0004 35.5 2.9 22 345-369 134-155 (316)
129 2ovx_A Matrix metalloproteinas 43.8 8.2 0.00028 32.9 1.5 10 359-368 113-122 (159)
130 3b4r_A Putative zinc metallopr 43.7 9.8 0.00033 34.5 2.0 20 356-375 47-67 (224)
131 2l0b_A E3 ubiquitin-protein li 43.6 8.9 0.0003 29.2 1.5 46 213-258 41-86 (91)
132 2ct2_A Tripartite motif protei 43.2 9.1 0.00031 28.4 1.5 47 213-259 16-66 (88)
133 1t1h_A Gspef-atpub14, armadill 41.9 12 0.00039 27.3 1.9 45 212-259 8-53 (78)
134 2ecn_A Ring finger protein 141 41.8 13 0.00044 26.4 2.1 43 213-259 16-58 (70)
135 3b8z_A Protein adamts-5; alpha 41.5 14 0.00047 32.8 2.6 15 355-369 139-153 (217)
136 4gne_A Histone-lysine N-methyl 40.6 77 0.0026 25.3 6.7 51 112-183 14-68 (107)
137 4ayc_A E3 ubiquitin-protein li 40.4 13 0.00045 30.5 2.2 44 213-259 54-97 (138)
138 1x4j_A Ring finger protein 38; 40.3 8.5 0.00029 27.9 0.9 48 211-258 22-69 (75)
139 2d8t_A Dactylidin, ring finger 40.2 11 0.00038 27.0 1.5 46 212-260 15-60 (71)
140 2rjq_A Adamts-5; metalloprotea 40.2 15 0.00051 35.6 2.9 22 345-369 134-155 (378)
141 2ecv_A Tripartite motif-contai 39.7 17 0.0006 26.4 2.6 27 160-186 38-72 (85)
142 1cge_A Fibroblast collagenase; 39.4 10 0.00036 32.4 1.5 11 358-368 112-122 (168)
143 2xs4_A Karilysin protease; hyd 39.3 11 0.00036 32.3 1.5 10 359-368 117-126 (167)
144 3dte_A IRRE protein; radiotole 39.0 21 0.00071 33.9 3.6 28 345-372 84-111 (301)
145 2v4b_A Adamts-1; zymogen, prot 38.8 17 0.00057 34.0 2.9 15 355-369 141-155 (300)
146 1jjd_A Metallothionein, SMTA; 38.6 9.7 0.00033 27.1 0.9 29 142-170 9-38 (55)
147 2y43_A E3 ubiquitin-protein li 38.4 13 0.00043 28.6 1.7 26 160-185 42-69 (99)
148 2jr6_A UPF0434 protein NMA0874 38.4 2.6 8.9E-05 31.3 -2.2 40 213-280 9-48 (68)
149 1hy7_A Stromelysin-1, MMP-3; m 38.2 11 0.00038 32.4 1.5 11 358-368 114-124 (173)
150 2gtq_A Aminopeptidase N; alani 37.9 8.1 0.00028 42.0 0.6 13 358-370 288-300 (867)
151 2dmi_A Teashirt homolog 3; zin 37.8 13 0.00046 28.5 1.8 14 210-223 78-91 (115)
152 2ct0_A Non-SMC element 1 homol 37.4 16 0.00056 27.2 2.1 17 109-125 11-27 (74)
153 3k7n_A K-like; SVMP, hydrolase 37.2 21 0.00073 35.1 3.5 25 345-369 127-151 (397)
154 1z5h_A Tricorn protease intera 37.2 7.6 0.00026 41.6 0.2 14 357-370 259-272 (780)
155 2ckl_A Polycomb group ring fin 36.8 16 0.00055 28.5 2.1 45 213-259 16-60 (108)
156 3vk6_A E3 ubiquitin-protein li 36.7 14 0.00049 29.4 1.7 43 143-185 4-49 (101)
157 2yur_A Retinoblastoma-binding 36.7 21 0.00073 25.8 2.6 26 160-185 35-64 (74)
158 2y43_A E3 ubiquitin-protein li 36.5 14 0.00049 28.2 1.7 45 213-259 23-67 (99)
159 1wev_A Riken cDNA 1110020M19; 36.5 19 0.00066 27.6 2.4 58 173-245 16-73 (88)
160 3nw0_A Non-structural maintena 36.2 15 0.00052 33.6 2.1 54 109-186 176-230 (238)
161 3edh_A Bone morphogenetic prot 36.1 13 0.00043 33.2 1.5 11 359-369 89-99 (201)
162 2hf1_A Tetraacyldisaccharide-1 35.7 12 0.00042 27.6 1.1 40 213-280 9-48 (68)
163 3ebh_A PFA-M1, M1 family amino 35.4 9.4 0.00032 41.7 0.6 14 357-370 295-308 (889)
164 3k7l_A Atragin; SVMP, metallop 35.4 22 0.00075 35.3 3.2 25 345-369 132-156 (422)
165 3lqb_A Hatching enzyme, LOC792 35.2 13 0.00045 33.1 1.5 11 358-368 94-104 (199)
166 3u9w_A Leukotriene A-4 hydrola 35.0 11 0.00037 39.1 0.9 12 359-370 289-300 (608)
167 2e6s_A E3 ubiquitin-protein li 34.7 64 0.0022 24.0 5.1 47 175-242 28-75 (77)
168 4fke_A Aminopeptidase N; zinc 34.2 8.4 0.00029 42.0 -0.0 13 358-370 317-329 (909)
169 1hv5_A Stromelysin 3; inhibiti 34.1 14 0.00049 31.4 1.5 11 358-368 114-124 (165)
170 2ea6_A Ring finger protein 4; 33.6 9.1 0.00031 26.9 0.1 47 212-258 15-65 (69)
171 2gvi_A Conserved hypothetical 33.3 7.6 0.00026 34.7 -0.5 13 158-170 190-202 (204)
172 2gvi_A Conserved hypothetical 33.3 8.8 0.0003 34.3 -0.0 30 213-244 173-202 (204)
173 2kre_A Ubiquitin conjugation f 33.2 26 0.00089 27.3 2.7 48 138-186 27-76 (100)
174 2js4_A UPF0434 protein BB2007; 33.1 13 0.00044 27.6 0.8 40 213-280 9-48 (70)
175 1i76_A MMP-8;, neutrophil coll 33.0 15 0.00052 31.2 1.5 11 358-368 113-123 (163)
176 3l11_A E3 ubiquitin-protein li 33.0 22 0.00074 28.0 2.3 11 213-223 51-61 (115)
177 3b34_A Aminopeptidase N; prote 32.9 11 0.00038 41.1 0.6 13 358-370 313-325 (891)
178 4ic3_A E3 ubiquitin-protein li 32.8 28 0.00095 25.3 2.7 21 163-185 47-67 (74)
179 1wgm_A Ubiquitin conjugation f 32.7 26 0.00088 27.3 2.6 47 138-185 20-69 (98)
180 2djb_A Polycomb group ring fin 32.7 14 0.00047 26.6 0.9 45 213-259 16-60 (72)
181 2csy_A Zinc finger protein 183 32.3 14 0.00047 27.2 0.9 45 212-259 15-59 (81)
182 2ecw_A Tripartite motif-contai 32.1 15 0.0005 26.8 1.0 44 213-259 20-69 (85)
183 1chc_A Equine herpes virus-1 r 32.0 29 0.00098 24.3 2.6 25 160-184 25-51 (68)
184 2ckl_A Polycomb group ring fin 32.0 19 0.00066 28.0 1.8 44 141-184 16-61 (108)
185 3cia_A Cold-active aminopeptid 31.5 14 0.00048 38.2 1.2 12 359-370 296-307 (605)
186 2pk7_A Uncharacterized protein 31.1 13 0.00045 27.5 0.6 40 213-280 9-48 (69)
187 1jm7_A BRCA1, breast cancer ty 31.0 22 0.00077 27.5 2.0 24 161-184 41-69 (112)
188 3oue_A Cytochrome C family pro 30.7 13 0.00044 32.0 0.5 86 162-256 56-156 (158)
189 3ayu_A 72 kDa type IV collagen 30.6 18 0.00061 31.0 1.5 11 358-368 115-125 (167)
190 4fgm_A Aminopeptidase N family 30.2 15 0.00052 38.1 1.2 14 357-370 267-280 (597)
191 1slm_A Stromelysin-1; hydrolas 29.9 18 0.00061 33.4 1.5 11 358-368 196-206 (255)
192 2xq0_A LTA-4 hydrolase, leukot 29.9 16 0.00054 38.1 1.2 12 359-370 297-308 (632)
193 1y93_A Macrophage metalloelast 29.9 19 0.00064 30.6 1.5 12 357-368 108-119 (159)
194 3lq0_A Proastacin; metallopept 29.6 18 0.00063 33.0 1.5 12 358-369 121-132 (235)
195 2xeu_A Ring finger protein 4; 29.4 8 0.00027 26.7 -0.8 47 213-259 4-54 (64)
196 2ko5_A Ring finger protein Z; 29.3 28 0.00096 27.5 2.2 46 209-258 25-70 (99)
197 4ger_A Gentlyase metalloprotea 29.1 18 0.00062 34.5 1.3 17 357-373 129-145 (304)
198 4aw6_A CAAX prenyl protease 1 29.1 24 0.00081 35.8 2.3 20 350-369 322-341 (482)
199 2ckl_B Ubiquitin ligase protei 29.1 18 0.00062 30.5 1.2 44 141-184 55-101 (165)
200 1u4g_A Elastase, pseudolysin; 28.7 18 0.00063 34.3 1.3 16 356-371 133-148 (301)
201 1bqb_A Protein (aureolysin); h 28.3 19 0.00065 34.2 1.3 15 357-371 138-152 (301)
202 2kr4_A Ubiquitin conjugation f 27.9 27 0.00091 26.3 1.9 47 138-185 12-60 (85)
203 3se6_A Endoplasmic reticulum a 27.7 16 0.00056 40.1 0.9 14 357-370 364-377 (967)
204 3dnz_A Thermolysin; hydrolase, 27.7 20 0.00067 34.4 1.3 17 357-373 136-152 (316)
205 3g5c_A ADAM 22; alpha/beta fol 27.5 35 0.0012 34.8 3.2 16 354-369 131-146 (510)
206 3ng2_A RNF4, snurf, ring finge 27.4 9.3 0.00032 27.1 -0.8 48 212-259 10-61 (71)
207 2ecg_A Baculoviral IAP repeat- 27.2 30 0.001 25.1 2.0 21 163-185 48-68 (75)
208 2y6d_A Matrilysin; hydrolase; 27.0 22 0.00076 30.6 1.5 10 359-368 117-126 (174)
209 4axq_A Archaemetzincin; metall 25.9 40 0.0014 29.0 2.9 26 344-369 94-126 (163)
210 2cki_A Ulilysin; metalloprotea 25.9 24 0.00083 32.7 1.6 15 357-372 162-176 (262)
211 2kre_A Ubiquitin conjugation f 25.8 33 0.0011 26.8 2.1 46 210-258 27-72 (100)
212 3nqx_A MCP-02, secreted metall 25.7 23 0.00077 33.8 1.3 16 356-371 134-149 (306)
213 1jm7_A BRCA1, breast cancer ty 25.6 19 0.00066 27.9 0.7 44 213-259 22-68 (112)
214 2c2l_A CHIP, carboxy terminus 25.4 30 0.001 31.2 2.1 47 138-185 206-255 (281)
215 2xdt_A Endoplasmic reticulum a 25.4 20 0.00067 39.1 0.9 14 357-370 302-315 (897)
216 2jrp_A Putative cytoplasmic pr 25.3 63 0.0022 24.6 3.5 9 115-123 4-12 (81)
217 2egp_A Tripartite motif-contai 25.1 24 0.0008 25.5 1.1 44 213-259 13-63 (79)
218 2vqx_A Metalloproteinase; ther 25.0 24 0.00081 34.2 1.3 16 357-372 156-171 (341)
219 2ckl_B Ubiquitin ligase protei 24.9 23 0.00077 29.9 1.1 45 213-259 55-100 (165)
220 2yt5_A Metal-response element- 24.9 37 0.0013 24.1 2.1 55 174-244 7-61 (66)
221 4ayc_A E3 ubiquitin-protein li 24.3 36 0.0012 27.8 2.2 23 162-184 74-98 (138)
222 3lrq_A E3 ubiquitin-protein li 24.3 28 0.00094 26.8 1.4 26 160-185 42-70 (100)
223 1rm8_A MMP-16, matrix metallop 24.2 27 0.00093 29.7 1.5 11 358-368 118-128 (169)
224 3ahn_A Oligopeptidase, PZ pept 23.5 28 0.00095 35.5 1.6 14 359-372 352-365 (564)
225 2f42_A STIP1 homology and U-bo 23.1 37 0.0013 29.7 2.1 47 138-185 104-153 (179)
226 2dmj_A Poly (ADP-ribose) polym 22.8 27 0.00093 27.8 1.1 21 167-187 19-39 (106)
227 3ztg_A E3 ubiquitin-protein li 22.7 22 0.00075 26.7 0.5 42 141-183 14-60 (92)
228 1g25_A CDK-activating kinase a 22.7 24 0.00082 24.6 0.7 30 158-187 25-57 (65)
229 3fl2_A E3 ubiquitin-protein li 21.9 31 0.0011 27.5 1.4 25 161-185 72-99 (124)
230 1e4u_A Transcriptional repress 21.8 39 0.0013 25.1 1.8 47 213-259 12-60 (78)
231 3knv_A TNF receptor-associated 21.7 26 0.00089 29.1 0.8 44 213-259 32-76 (141)
232 3sks_A Putative oligoendopepti 21.2 33 0.0011 35.2 1.6 14 359-372 355-368 (567)
233 1yx4_A 26S proteasome non-ATPa 21.2 19 0.00063 30.1 -0.2 19 45-63 39-57 (132)
234 1wgm_A Ubiquitin conjugation f 21.2 50 0.0017 25.5 2.4 45 211-258 21-66 (98)
235 3fl2_A E3 ubiquitin-protein li 21.2 40 0.0014 26.8 1.8 44 213-259 53-97 (124)
236 2ecj_A Tripartite motif-contai 21.1 87 0.003 20.7 3.4 30 213-245 16-45 (58)
237 3gor_A Putative metal-dependen 20.3 67 0.0023 25.7 3.1 25 355-379 122-151 (157)
238 1weo_A Cellulose synthase, cat 20.2 26 0.00089 27.3 0.4 14 171-184 14-27 (93)
239 3hcs_A TNF receptor-associated 20.2 35 0.0012 28.7 1.4 45 141-186 19-66 (170)
240 4gwm_A Meprin A subunit beta; 20.2 34 0.0012 35.5 1.5 12 358-369 125-136 (592)
No 1
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.92 E-value=2e-25 Score=189.45 Aligned_cols=121 Identities=20% Similarity=0.461 Sum_probs=107.5
Q ss_pred CCCccccCCcccccCceEeeCCceecCCCcccCCCCCCCCCceeeccCCcccccccccccccccccccCCcccCCCCcce
Q 016954 112 GYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDVCKHFIPSNHGGLI 191 (380)
Q Consensus 112 ~~~~C~~C~~~I~~g~~v~alg~~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~cy~~~f~pkC~~C~~~I~~~~~~~i 191 (380)
..++|++|+++|..++++.++|+.||++||+|..|+++|.+..|+.++|++||+.||.++|+++|.+|+++|.+++ ..|
T Consensus 2 ~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~-~~~ 80 (126)
T 2xqn_T 2 EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPEV-QRV 80 (126)
T ss_dssp CCCBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCCTTS-CEE
T ss_pred cCCCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCCcCc-eEE
Confidence 3579999999997788999999999999999999999999989999999999999999999999999999999742 457
Q ss_pred EEecccccccccCCCCcc--CCCCcccccCCcCCCCCceEEccCCcccChhhhhhh
Q 016954 192 EYRAHPFWVQKYCPSHEH--DGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSA 245 (380)
Q Consensus 192 ~~~~~~fw~qkycp~h~H--~~CF~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~ 245 (380)
++.++ +|| +.||+|..|+++|. +..|+ +.+|++||..++.++
T Consensus 81 ~a~~~----------~~H~~~~CF~C~~C~~~l~-~~~f~-~~~~~~yC~~~~~~~ 124 (126)
T 2xqn_T 81 TYNNF----------SWHASTECFLCSCCSKCLI-GQKFM-PVEGMVFCSVECKKR 124 (126)
T ss_dssp EETTE----------EEESSTTTSBCTTTCCBCT-TSEEE-EETTEEESSHHHHHS
T ss_pred ECCCC----------EeeCCCCCcCcCCCCCccC-CCeeE-eECCEEcchHHhhhh
Confidence 77764 469 99999999999995 77887 469999999777653
No 2
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.91 E-value=6.1e-25 Score=198.24 Aligned_cols=124 Identities=25% Similarity=0.560 Sum_probs=108.7
Q ss_pred CCCCCccccCCcccccCceEeeCCceecCCCcccCCCCCCCCCceeeccCCcccccccccccccccccccCCcccCCCCc
Q 016954 110 PEGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDVCKHFIPSNHGG 189 (380)
Q Consensus 110 ~~~~~~C~~C~~~I~~g~~v~alg~~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~cy~~~f~pkC~~C~~~I~~~~~~ 189 (380)
....++|.+|+++|....++.++++.||+.||+|..|+++|.+..| .++|++||+.||.++|+++|..|+++|.+.. .
T Consensus 57 ~~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~kC~~C~~~I~~~~-~ 134 (182)
T 2jtn_A 57 TPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQLGIPPTQ-V 134 (182)
T ss_dssp CCSCCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCCE-EETTEEECHHHHHHTTSCCCTTTCCCCCSSC-C
T ss_pred CCCCCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCce-eECCEeeecCccccccccccccCCCccCCCc-e
Confidence 4567899999999976667899999999999999999999998776 6899999999999999999999999998753 2
Q ss_pred ceEEecccccccccCCCCccCCCCcccccCCcCCCCCceEEccCCcccChhhhhhh
Q 016954 190 LIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSA 245 (380)
Q Consensus 190 ~i~~~~~~fw~qkycp~h~H~~CF~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~ 245 (380)
++.+.++ +||..||+|..|+++|..|+.|+...+|++||..||.++
T Consensus 135 v~~a~~~----------~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~cy~~~ 180 (182)
T 2jtn_A 135 VRRAQDF----------VYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETA 180 (182)
T ss_dssp CCEETTE----------ECCTTTCCCTTTCCCCCTTCEEEECTTSCEECHHHHHHH
T ss_pred EEecCCC----------CEEeCCCcCCCCCCCCCCCCceEEccCCEEECHHHHHHh
Confidence 3455543 579999999999999977888887789999999999875
No 3
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.91 E-value=3.2e-25 Score=197.86 Aligned_cols=126 Identities=25% Similarity=0.543 Sum_probs=108.1
Q ss_pred CCCCccccCCcccccCceEeeCCceecCCCcccCCCCCCCCCceeeccCCcccccccccccccccccccCCcccCCCCcc
Q 016954 111 EGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDVCKHFIPSNHGGL 190 (380)
Q Consensus 111 ~~~~~C~~C~~~I~~g~~v~alg~~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~cy~~~f~pkC~~C~~~I~~~~~~~ 190 (380)
++.++|.+|+++|....++.++|+.||++||+|..|+.+|.+..| .++|++||+.||.++|+++|.+|+++|.+.+ .+
T Consensus 4 ~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~~C~~C~~~I~~~~-~v 81 (169)
T 2rgt_A 4 PEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQLGIPPTQ-VV 81 (169)
T ss_dssp ---CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCCE-ESSSCEECHHHHHHHHSCBCTTTCCBCCTTS-EE
T ss_pred CCCCccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCCCCc-ccCCeeeecccccccccccccccccccCCCc-EE
Confidence 356899999999976667899999999999999999999998775 7899999999999999999999999998753 23
Q ss_pred eEEecccccccccCCCCccCCCCcccccCCcCCCCCceEEccCCcccChhhhhhhccC
Q 016954 191 IEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMD 248 (380)
Q Consensus 191 i~~~~~~fw~qkycp~h~H~~CF~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~v~~ 248 (380)
+.+.++ +||..||+|..|+++|..|+.|+.+.||++||..||.++.+.
T Consensus 82 ~~a~~~----------~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~~~ 129 (169)
T 2rgt_A 82 RRAQDF----------VYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQG 129 (169)
T ss_dssp EEETTE----------EEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHHHC
T ss_pred EEcCCc----------eEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHHhhc
Confidence 345543 479999999999999977888877789999999999987654
No 4
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.91 E-value=2.9e-25 Score=189.55 Aligned_cols=121 Identities=19% Similarity=0.462 Sum_probs=106.7
Q ss_pred CCccccCCcccccCceEeeCCceecCCCcccCCCCCCCCC--ceeeccCCcccccccccccccc--cccccCCcccCCCC
Q 016954 113 YRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITD--IEFSTSENRPYHKSCYREHYHP--KCDVCKHFIPSNHG 188 (380)
Q Consensus 113 ~~~C~~C~~~I~~g~~v~alg~~wH~~CF~C~~C~~~L~~--~~f~~~dg~~YC~~cy~~~f~p--kC~~C~~~I~~~~~ 188 (380)
.++|++|+++|..+.++.++++.||++||+|..|+.+|.. ..|+..+|++||+.||.++|++ +|..|+++|.+.+
T Consensus 2 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~e- 80 (131)
T 2xjy_A 2 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYE- 80 (131)
T ss_dssp CCBBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECTTS-
T ss_pred cccCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCccc-
Confidence 4789999999965557999999999999999999999963 6799999999999999999999 9999999998743
Q ss_pred cceEEecccccccccCCCCccCCCCcccccCCcCCCCCceEEccCCcccChhhhhhh
Q 016954 189 GLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSA 245 (380)
Q Consensus 189 ~~i~~~~~~fw~qkycp~h~H~~CF~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~ 245 (380)
.++.+.++ .||+.||+|..|+++|..+++|+. .+|++||..||.++
T Consensus 81 ~~~~a~~~----------~~H~~CF~C~~C~~~L~~g~~f~~-~~~~~~C~~c~~~~ 126 (131)
T 2xjy_A 81 MTMRVKDK----------VYHLECFKCAACQKHFCVGDRYLL-INSDIVCEQDIYEW 126 (131)
T ss_dssp EEEEETTE----------EEEGGGCBCTTTCCBCCTTCEEEE-ETTEEEEGGGHHHH
T ss_pred eeEeeCCc----------eECccCcccCCCCCCCCCCCEEEE-ECCEEEcHHHHHHH
Confidence 35666664 469999999999999977888885 59999999999875
No 5
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.89 E-value=3e-24 Score=195.31 Aligned_cols=132 Identities=21% Similarity=0.453 Sum_probs=114.9
Q ss_pred CCCCccccCCcccccCceEeeCCceecCCCcccCCCCCCCCCceeeccCCccccccccccccccc---------------
Q 016954 111 EGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPK--------------- 175 (380)
Q Consensus 111 ~~~~~C~~C~~~I~~g~~v~alg~~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~cy~~~f~pk--------------- 175 (380)
.+.++|.+|+++|+.++.|.++++.||++||+|..|+++|.+..|+..+|++||+.||.++|+++
T Consensus 5 ~~~~~C~~C~~~I~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~~g~~~~~~ 84 (192)
T 1b8t_A 5 GGGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDK 84 (192)
T ss_dssp CCCEECTTTCCEECSSCCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCCCCCCCCCC
T ss_pred CCCCcCccCCCeecceeEEEeCCceecCCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCccccccccccccEecCC
Confidence 45689999999998788999999999999999999999999989999999999999999999887
Q ss_pred ---------------------------------ccccCCcccCCCCcceEEecccccccccCCCCccCCCCcccccCCcC
Q 016954 176 ---------------------------------CDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERME 222 (380)
Q Consensus 176 ---------------------------------C~~C~~~I~~~~~~~i~~~~~~fw~qkycp~h~H~~CF~C~~C~r~l 222 (380)
|..|+++|.+.. .|.+.++ +||..||+|..|+++|
T Consensus 85 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~C~~C~~~I~~~~--~v~a~~~----------~~H~~CF~C~~C~~~L 152 (192)
T 1b8t_A 85 GESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAAE--KVIGAGK----------SWHKSCFRCAKCGKSL 152 (192)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECTTTSCEECSSS--CEEETTE----------EECTTTCBCTTTCCBC
T ss_pred CcccccccccccccCCCCcCccccccccCCCCcCCCCCCEecCcE--EEecCCC----------ccchhcCCccccCCCC
Confidence 678888887543 4666654 4799999999999999
Q ss_pred CCCCceEEccCCcccChhhhhhhccCCCCCCcchHH
Q 016954 223 PQDTAYVALDDGRKLCLECLDSAIMDTNECQPLYLD 258 (380)
Q Consensus 223 ~~g~~f~~l~dg~~~C~~C~~~~v~~~~~C~~c~~~ 258 (380)
. +..|+ ..||++||..||.+ ++.++|..|.+.
T Consensus 153 ~-~~~~~-~~~g~~yC~~cy~~--~f~~kc~~C~~~ 184 (192)
T 1b8t_A 153 E-STTLA-DKDGEIYCKGCYAK--NFGPKGFGFGQG 184 (192)
T ss_dssp C-SSSEE-EETTEEEEHHHHHH--HTCCCCCCCCCC
T ss_pred C-CCccc-ccCCEEeCHHHHHH--hcCCcCCCCCCc
Confidence 5 45677 57999999999998 578899999843
No 6
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.89 E-value=2.7e-24 Score=195.05 Aligned_cols=123 Identities=20% Similarity=0.494 Sum_probs=107.8
Q ss_pred CCCccccCCcccccCceEeeCCceecCCCcccCCCCCCCCC--ceeeccCCcccccccccccccc--cccccCCcccCCC
Q 016954 112 GYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITD--IEFSTSENRPYHKSCYREHYHP--KCDVCKHFIPSNH 187 (380)
Q Consensus 112 ~~~~C~~C~~~I~~g~~v~alg~~wH~~CF~C~~C~~~L~~--~~f~~~dg~~YC~~cy~~~f~p--kC~~C~~~I~~~~ 187 (380)
..++|++|+++|....++.++++.||++||+|..|+++|.. ..|+.++|++||+.||.++|++ +|..|+++|.+.+
T Consensus 4 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~e 83 (188)
T 1rut_X 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPASE 83 (188)
T ss_dssp CCCBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECTTS
T ss_pred CCCcCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccccCc
Confidence 45799999999975557899999999999999999999985 6899999999999999999999 7999999998743
Q ss_pred CcceEEecccccccccCCCCccCCCCcccccCCcCCCCCceEEccCCcccChhhhhhhc
Q 016954 188 GGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAI 246 (380)
Q Consensus 188 ~~~i~~~~~~fw~qkycp~h~H~~CF~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~v 246 (380)
.++.+.++ .||+.||+|..|+++|..+..|+ +.+|++||..||.+++
T Consensus 84 -~~i~a~~~----------~~H~~CF~C~~C~~~L~~g~~f~-~~~g~~yC~~c~~~~~ 130 (188)
T 1rut_X 84 -LVMRAQGN----------VYHLKCFTCSTCRNRLVPGDRFH-YINGSLFCEHDRPTAL 130 (188)
T ss_dssp -EEEEETTE----------EECGGGCBCTTTCCBCCTTCEEE-EETTEEEEGGGCCTTT
T ss_pred -EEEEcCCC----------EEeCCCCeECCCCCCCCCCCeEE-EECCeEECHHHHHHHh
Confidence 35667664 46999999999999997788888 4699999999999854
No 7
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.85 E-value=1.2e-21 Score=159.74 Aligned_cols=98 Identities=26% Similarity=0.554 Sum_probs=87.6
Q ss_pred CCCCccccCCccccc-CceEeeCCceecCCCcccCCCCCCCCCceeeccCCcccccccccccccccccccCCcccCCCCc
Q 016954 111 EGYRICAGCNNEIGH-GRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDVCKHFIPSNHGG 189 (380)
Q Consensus 111 ~~~~~C~~C~~~I~~-g~~v~alg~~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~cy~~~f~pkC~~C~~~I~~~~~~ 189 (380)
.+.++|.+|+++|.. ++++.++++.||+.||+|..|+++|.+..|+..+|++||+.||.++|+++|..|+++|.+.+ .
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~-~ 81 (101)
T 2cup_A 3 SGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIVAGD-Q 81 (101)
T ss_dssp SCCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCCSSS-C
T ss_pred CCCCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccccCC-e
Confidence 456899999999964 78999999999999999999999999888999999999999999999999999999998532 3
Q ss_pred ceEEecccccccccCCCCccCCCCcccccC
Q 016954 190 LIEYRAHPFWVQKYCPSHEHDGTPRCCSCE 219 (380)
Q Consensus 190 ~i~~~~~~fw~qkycp~h~H~~CF~C~~C~ 219 (380)
.|.+.++ .||+.||+|..|+
T Consensus 82 ~~~a~~~----------~~H~~CF~C~~C~ 101 (101)
T 2cup_A 82 NVEYKGT----------VWHKDCFSGPSSG 101 (101)
T ss_dssp EEESSSC----------EEETTTCCCTTCC
T ss_pred EEEeCCc----------chHHhCCCCCCCC
Confidence 5777664 4699999999996
No 8
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.78 E-value=3.8e-20 Score=156.56 Aligned_cols=109 Identities=16% Similarity=0.287 Sum_probs=91.8
Q ss_pred CCCCccccCCcccccCceEeeCCceecCCCcccCCCCCCCC--CceeeccCCcccccccccccccc--cccccCCcccCC
Q 016954 111 EGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPIT--DIEFSTSENRPYHKSCYREHYHP--KCDVCKHFIPSN 186 (380)
Q Consensus 111 ~~~~~C~~C~~~I~~g~~v~alg~~wH~~CF~C~~C~~~L~--~~~f~~~dg~~YC~~cy~~~f~p--kC~~C~~~I~~~ 186 (380)
...++|++|+++|..+.++.++++.||++||+|..|+.+|. +..|+.++|++||+.||.++|++ +|..|+++|.+.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~ 82 (122)
T 1m3v_A 3 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGG 82 (122)
T ss_dssp SCCCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCE
T ss_pred CCCCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCch
Confidence 35689999999997666799999999999999999999997 36799999999999999999999 999999999964
Q ss_pred CCcceEEecccccccccCCCCccCCCCcccccCCcCCCCCceEEccCCcccChhhhhhhcc
Q 016954 187 HGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIM 247 (380)
Q Consensus 187 ~~~~i~~~~~~fw~qkycp~h~H~~CF~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~v~ 247 (380)
. +++.+ +++..|++|+ +.++++||..|+.+..+
T Consensus 83 ~---~~~~g------------------------~~~l~g~~f~-~~~~~~yC~~~~~~~~~ 115 (122)
T 1m3v_A 83 D---VMVVG------------------------EPTLMGGEFG-DEDERLITRLENTQFDA 115 (122)
T ss_dssp E---SSSSS------------------------SSSCCSCTTC-CTTCCCCEECTTTTTTC
T ss_pred h---eEEcC------------------------CcCCCCCccE-ecCCEeEccCcchhchh
Confidence 3 33332 2234688887 67999999999987543
No 9
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.72 E-value=4e-18 Score=142.38 Aligned_cols=103 Identities=17% Similarity=0.326 Sum_probs=86.5
Q ss_pred CCCccccCCcccccCceEeeCCceecCCCcccCCCCCCCCC--ceeeccCCcccccccccccccccccccCCcccCCCCc
Q 016954 112 GYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITD--IEFSTSENRPYHKSCYREHYHPKCDVCKHFIPSNHGG 189 (380)
Q Consensus 112 ~~~~C~~C~~~I~~g~~v~alg~~wH~~CF~C~~C~~~L~~--~~f~~~dg~~YC~~cy~~~f~pkC~~C~~~I~~~~~~ 189 (380)
+.++|++|+++|..+.++.++++.||++||+|..|+++|.+ ..|+.++|++||+.||.++|+++|..|.. +.
T Consensus 2 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c~~c~~---~~--- 75 (114)
T 1j2o_A 2 SLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMGSG---GD--- 75 (114)
T ss_dssp CCBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCCSSCBS---CS---
T ss_pred cCCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcccCcCCC---Cc---
Confidence 45789999999975568999999999999999999999985 67999999999999999999999998862 11
Q ss_pred ceEEecccccccccCCCCccCCCCcccccCCcCCCCCceEEccCCcccChhhhhhhc
Q 016954 190 LIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAI 246 (380)
Q Consensus 190 ~i~~~~~~fw~qkycp~h~H~~CF~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~v 246 (380)
++ + |++++..|++|+ +.++++||..|+.+..
T Consensus 76 ~~----------------------~---~~~~~~~g~~f~-~~~~~~~C~~~~~~~~ 106 (114)
T 1j2o_A 76 VM----------------------V---VGEPTLMGGEFG-DEDERLITRLENTQFD 106 (114)
T ss_dssp CC----------------------C---SSCSSTTSSBCC-CSSSCCCEEEECTTCC
T ss_pred ee----------------------E---cCCccCCCCeeE-EcCCEeecchhhhccc
Confidence 11 1 345566788987 6799999999998743
No 10
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.62 E-value=2e-16 Score=122.37 Aligned_cols=71 Identities=24% Similarity=0.526 Sum_probs=66.6
Q ss_pred CccccCCcccccCceEeeCCceecCCCcccCCCCCCCCCceeeccCCccccc-ccccccccccccccCCccc
Q 016954 114 RICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHK-SCYREHYHPKCDVCKHFIP 184 (380)
Q Consensus 114 ~~C~~C~~~I~~g~~v~alg~~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~-~cy~~~f~pkC~~C~~~I~ 184 (380)
++|.+|+++|..++.|.++++.||++||+|..|+++|.+..|+..+|++||+ .||.++|+++|..|++.+.
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C~~~~~ 72 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGGAES 72 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCSSCCCSSS
T ss_pred CcCCCCCCEEECceEEEECCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhCccCCCcCCcee
Confidence 5799999999778999999999999999999999999988999999999999 6999999999999997654
No 11
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.61 E-value=1.3e-16 Score=124.81 Aligned_cols=74 Identities=24% Similarity=0.503 Sum_probs=58.2
Q ss_pred CCCCCccccCCcccccCceEeeCCceecCCCcccCCCCCCCCCceeeccCCcccccccccccccccccccCCcc
Q 016954 110 PEGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDVCKHFI 183 (380)
Q Consensus 110 ~~~~~~C~~C~~~I~~g~~v~alg~~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~cy~~~f~pkC~~C~~~I 183 (380)
+.+.++|.+|+++|..++.+.++++.||++||+|..|+++|....|+..++++||+.||.++|+++|..|++..
T Consensus 4 ~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~gcg~g~ 77 (81)
T 1a7i_A 4 WGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQGA 77 (81)
T ss_dssp ----CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC----------
T ss_pred CCCCCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCcccccCCcc
Confidence 45678999999999878999999999999999999999999998899999999999999999999999999764
No 12
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=1.2e-15 Score=122.00 Aligned_cols=68 Identities=31% Similarity=0.663 Sum_probs=63.7
Q ss_pred CCCCCccccCCcccccCceEeeCCceecCCCcccCCCCCCCCCceeeccCCcccccccccccccccccc
Q 016954 110 PEGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDV 178 (380)
Q Consensus 110 ~~~~~~C~~C~~~I~~g~~v~alg~~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~cy~~~f~pkC~~ 178 (380)
....++|.+|+++| .+++|.++++.||++||+|..|+++|.+..|+..++++||+.||.++|+|+|..
T Consensus 22 ~~~~~~C~~C~~~I-~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~c~s 89 (90)
T 2dar_A 22 GKRTPMCAHCNQVI-RGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASGPSS 89 (90)
T ss_dssp TTCCCBBSSSCCBC-CSCEEEETTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTSCCCCC
T ss_pred CCCCCCCccCCCEe-cceEEEECCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcCCCCCC
Confidence 45678999999999 689999999999999999999999999989999999999999999999999963
No 13
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=8.2e-16 Score=118.88 Aligned_cols=70 Identities=17% Similarity=0.458 Sum_probs=65.0
Q ss_pred CCCCCCccccCCcccccCceEeeCCceecCCCcccCCCCCCCCCceeeccCCccccc-ccccccccccccc
Q 016954 109 FPEGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHK-SCYREHYHPKCDV 178 (380)
Q Consensus 109 ~~~~~~~C~~C~~~I~~g~~v~alg~~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~-~cy~~~f~pkC~~ 178 (380)
++...++|.+|+++|..++.|.++++.||++||+|..|+++|.+..|+..++++||+ .||.++|+|+|..
T Consensus 5 ~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~kc~g 75 (76)
T 2cu8_A 5 SSGMASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSGPSS 75 (76)
T ss_dssp CCCCCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHSCSSCSC
T ss_pred cCCCCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhcccccCC
Confidence 456778999999999778999999999999999999999999998899999999999 7999999999963
No 14
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.57 E-value=1.8e-15 Score=117.03 Aligned_cols=69 Identities=23% Similarity=0.527 Sum_probs=64.0
Q ss_pred CCCccccCCccccc---CceEeeCCceecCCCcccCCCCCCCCCceeeccCCcccccccccccccccccccC
Q 016954 112 GYRICAGCNNEIGH---GRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDVCK 180 (380)
Q Consensus 112 ~~~~C~~C~~~I~~---g~~v~alg~~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~cy~~~f~pkC~~C~ 180 (380)
..++|.+|+++|.. +++|.++++.||++||+|..|+++|.+..|+..++++||+.||.++|+++|..+.
T Consensus 4 ~~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~~~s 75 (76)
T 1x68_A 4 GSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDISGPSS 75 (76)
T ss_dssp CCCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCCCSSSSSC
T ss_pred cCCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhhhCCcCCCCC
Confidence 45789999999962 3899999999999999999999999998999999999999999999999999875
No 15
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.57 E-value=1.2e-15 Score=119.55 Aligned_cols=67 Identities=36% Similarity=0.756 Sum_probs=62.5
Q ss_pred CCCCccccCCcccccCceEeeCCceecCCCcccCCCCCCCCCceeeccCCcccccccccccccccccc
Q 016954 111 EGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDV 178 (380)
Q Consensus 111 ~~~~~C~~C~~~I~~g~~v~alg~~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~cy~~~f~pkC~~ 178 (380)
.+.++|.+|+++|..+++|.++++.||++||+|..|+++|.+ .|+.+++++||+.||.++|+++|..
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~~fg~~C~~ 79 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFGSGPSS 79 (80)
T ss_dssp SSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSS-CCEEETTEEECTTHHHHHTTCCSTT
T ss_pred CCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCC-CeEEECCEEECHHHHHHHcCCCCCC
Confidence 467899999999987899999999999999999999999986 6999999999999999999999974
No 16
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=1.4e-15 Score=115.23 Aligned_cols=67 Identities=25% Similarity=0.621 Sum_probs=62.4
Q ss_pred CCCCccccCCcccccCceEeeCCceecCCCcccCCCCCCCCCceeeccCCcccccccccccccccccc
Q 016954 111 EGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDV 178 (380)
Q Consensus 111 ~~~~~C~~C~~~I~~g~~v~alg~~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~cy~~~f~pkC~~ 178 (380)
.+.++|.+|+++|. ++.|.++++.||++||+|..|+++|.+..|+..++++||+.||.++|+++|..
T Consensus 3 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~g 69 (69)
T 2cur_A 3 SGSSGCVKCNKAIT-SGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGPSSG 69 (69)
T ss_dssp CCCCCCSSSCCCCC-TTCEEETTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHTCSCCC
T ss_pred CCcCCCcccCCEeC-cceEEECccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhcCCCCC
Confidence 45689999999994 78899999999999999999999999889999999999999999999999964
No 17
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=2e-15 Score=114.62 Aligned_cols=67 Identities=24% Similarity=0.606 Sum_probs=62.1
Q ss_pred CCCCccccCCcccccCceEeeCCceecCCCcccCCCCCCCCCceeeccCCcccccccccccccccccc
Q 016954 111 EGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDV 178 (380)
Q Consensus 111 ~~~~~C~~C~~~I~~g~~v~alg~~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~cy~~~f~pkC~~ 178 (380)
.+.++|.+|+++|. ++.|.++++.||++||+|..|+++|.+..|+..++++||+.||.++|+|+|..
T Consensus 3 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~~ 69 (70)
T 2d8z_A 3 SGSSGCVQCKKPIT-TGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASGPSS 69 (70)
T ss_dssp CCCCBCSSSCCBCC-SSEEESSSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHTCCCCTT
T ss_pred CCCCCCcccCCeec-cceEEECccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHhccccCC
Confidence 35679999999995 77899999999999999999999999989999999999999999999999963
No 18
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=8.7e-15 Score=117.09 Aligned_cols=73 Identities=18% Similarity=0.378 Sum_probs=66.5
Q ss_pred CCCCccccCCcccccCceEeeCCceecCCCcccCCCCCCCCCceeeccCCcccccccccccccccccccCCcc
Q 016954 111 EGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDVCKHFI 183 (380)
Q Consensus 111 ~~~~~C~~C~~~I~~g~~v~alg~~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~cy~~~f~pkC~~C~~~I 183 (380)
.+..+|.+|+++|..++.|.++++.||+.||+|..|+++|....|+..++++||+.||.++|+++|..+..+.
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~kc~~~~g~g 85 (91)
T 2d8y_A 13 PARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFG 85 (91)
T ss_dssp SSSCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCCSCCCSCCC
T ss_pred CCCCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhCCCcCccCCcC
Confidence 4678999999999777899999999999999999999999988899999999999999999999998655544
No 19
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=3.6e-15 Score=113.74 Aligned_cols=67 Identities=25% Similarity=0.630 Sum_probs=62.4
Q ss_pred CCCccccCCccccc-CceEeeCCceecCCCcccCCCCCCCCCceeeccCCcccccccccccccccccc
Q 016954 112 GYRICAGCNNEIGH-GRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDV 178 (380)
Q Consensus 112 ~~~~C~~C~~~I~~-g~~v~alg~~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~cy~~~f~pkC~~ 178 (380)
..++|.+|+++|.. +.++.++++.||++||+|..|+++|.+..|+..++++||+.||.++|+|+|..
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1wyh_A 4 GSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFASGPSS 71 (72)
T ss_dssp CCCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHTSCCCCC
T ss_pred cCCCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHccCcCCC
Confidence 45799999999976 48899999999999999999999999989999999999999999999999963
No 20
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=4.9e-15 Score=112.98 Aligned_cols=67 Identities=30% Similarity=0.677 Sum_probs=62.1
Q ss_pred CCCccccCCcccccC-ceEeeCCceecCCCcccCCCCCCCCCceeeccCCcccccccccccccccccc
Q 016954 112 GYRICAGCNNEIGHG-RFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDV 178 (380)
Q Consensus 112 ~~~~C~~C~~~I~~g-~~v~alg~~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~cy~~~f~pkC~~ 178 (380)
..++|.+|+++|..+ .++.++++.||++||+|..|+++|.+..|+..++++||+.||.++|+++|..
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1x4k_A 4 GSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASGPSS 71 (72)
T ss_dssp CCCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTSSCCCC
T ss_pred cCCCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHhCCCCCC
Confidence 457999999999764 6899999999999999999999999989999999999999999999999963
No 21
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.52 E-value=5.9e-15 Score=112.76 Aligned_cols=66 Identities=26% Similarity=0.633 Sum_probs=61.0
Q ss_pred CCCCccccCCccccc---CceEeeCCceecCCCcccCCCCCCCCCceeeccCCcccccccccccccccc
Q 016954 111 EGYRICAGCNNEIGH---GRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKC 176 (380)
Q Consensus 111 ~~~~~C~~C~~~I~~---g~~v~alg~~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~cy~~~f~pkC 176 (380)
.+.++|.+|+++|.. ..++.++++.||++||+|..|+++|.+..|+..++++||+.||.++|+|++
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~p~~ 71 (72)
T 1x4l_A 3 SGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPSS 71 (72)
T ss_dssp SCSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCCSSC
T ss_pred CCCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCcccCCCC
Confidence 456899999999963 388999999999999999999999999999999999999999999999986
No 22
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=8.7e-15 Score=114.61 Aligned_cols=70 Identities=24% Similarity=0.492 Sum_probs=63.9
Q ss_pred CCCCCCccccCCcccc-cCceEeeCCceecCCCcccCCCCCCCCCceeeccCCcccccccccccccccccc
Q 016954 109 FPEGYRICAGCNNEIG-HGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDV 178 (380)
Q Consensus 109 ~~~~~~~C~~C~~~I~-~g~~v~alg~~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~cy~~~f~pkC~~ 178 (380)
.....++|++|+++|. .+.++.++++.||+.||+|..|+++|.+..|+..++++||+.||.++|+++|.+
T Consensus 11 ~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~~~~~C~~ 81 (82)
T 2ehe_A 11 DNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSGPSS 81 (82)
T ss_dssp CCCCSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSSCCEEEETTEEEETTTSSCCGGGSSCC
T ss_pred CcccCCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccCCCccEeeCCEEECHHHHhhhcCCCCCC
Confidence 3446689999999996 378899999999999999999999999989999999999999999999999974
No 23
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.51 E-value=3.9e-15 Score=111.82 Aligned_cols=63 Identities=27% Similarity=0.654 Sum_probs=59.4
Q ss_pred CCCccccCCcccccCceEeeCCceecCCCcccCCCCCCCCCceeeccCCccccccccccccccc
Q 016954 112 GYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPK 175 (380)
Q Consensus 112 ~~~~C~~C~~~I~~g~~v~alg~~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~cy~~~f~pk 175 (380)
..++|++|+++|. ++++.++++.||++||+|..|+++|.+..|+..+|++||+.||.++|+|+
T Consensus 4 ~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~k 66 (66)
T 1nyp_A 4 GVPICGACRRPIE-GRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDV 66 (66)
T ss_dssp CCCEETTTTEECC-SCEECCTTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHCSCC
T ss_pred CCCCCcccCCEec-ceEEEECccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHHhCCC
Confidence 4678999999996 89999999999999999999999999989999999999999999999875
No 24
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=5e-15 Score=115.42 Aligned_cols=66 Identities=24% Similarity=0.505 Sum_probs=61.5
Q ss_pred CCCCccccCCcccccCceEeeCCceecCCCcccCCCCCCCCCceeeccCCccccccccccccccccc
Q 016954 111 EGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCD 177 (380)
Q Consensus 111 ~~~~~C~~C~~~I~~g~~v~alg~~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~cy~~~f~pkC~ 177 (380)
+..++|.+|+++|. +++|.++++.||++||+|..|+++|.+..|+..++++||+.||.++|+|++.
T Consensus 13 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p~g~ 78 (79)
T 1x62_A 13 QKLPMCDKCGTGIV-GVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPSS 78 (79)
T ss_dssp CCCCCCSSSCCCCC-SSCEECSSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHSSCCC
T ss_pred CCCCccccCCCCcc-CcEEEECcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 46789999999995 6899999999999999999999999988899999999999999999999875
No 25
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=7e-15 Score=113.58 Aligned_cols=67 Identities=21% Similarity=0.476 Sum_probs=60.5
Q ss_pred CCCCccccCCccccc-CceEeeCCceecCCCcccCCCCCCCCCceeeccCCccccccccccccccccc
Q 016954 111 EGYRICAGCNNEIGH-GRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCD 177 (380)
Q Consensus 111 ~~~~~C~~C~~~I~~-g~~v~alg~~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~cy~~~f~pkC~ 177 (380)
.+.++|.+|+++|.. +.++.++++.||+.||+|..|+++|.+..|+..+|++||+.||.++|+++|.
T Consensus 9 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~~C~ 76 (77)
T 1g47_A 9 LASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCWI 76 (77)
T ss_dssp CCCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCCCC--
T ss_pred CCCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhhcccC
Confidence 456899999999975 5678999999999999999999999988899999999999999999999996
No 26
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=1.2e-14 Score=113.59 Aligned_cols=67 Identities=22% Similarity=0.532 Sum_probs=62.1
Q ss_pred CCCCccccCCcccccCceEeeCCceecCCCcccCCCCCCCCCceeecc-CCcccccccccccccccccc
Q 016954 111 EGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTS-ENRPYHKSCYREHYHPKCDV 178 (380)
Q Consensus 111 ~~~~~C~~C~~~I~~g~~v~alg~~wH~~CF~C~~C~~~L~~~~f~~~-dg~~YC~~cy~~~f~pkC~~ 178 (380)
.+.++|++|+++|. +++|.++++.||++||+|..|+++|.+..|+.. +|++||+.||.++|+|+|.+
T Consensus 13 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f~~~C~~ 80 (81)
T 2dlo_A 13 ATLEKCATCSQPIL-DRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASGPSS 80 (81)
T ss_dssp SSCCBCTTTCCBCC-SCCEEETTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTTSSSCC
T ss_pred cCCCccccCCCeec-ceeEEECCccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHHHhcCcCCC
Confidence 57899999999995 789999999999999999999999998888876 79999999999999999974
No 27
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=1.8e-14 Score=114.84 Aligned_cols=67 Identities=22% Similarity=0.522 Sum_probs=62.2
Q ss_pred CCCCCccccCCcccccCceEeeCCceecCCCcccCCCCCCCCCceeeccCCccccccccccccccccc
Q 016954 110 PEGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCD 177 (380)
Q Consensus 110 ~~~~~~C~~C~~~I~~g~~v~alg~~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~cy~~~f~pkC~ 177 (380)
.....+|.+|++.|. ++++.++++.||++||+|..|+++|.+..|+..++++||+.||.++|+|+|.
T Consensus 22 ~~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~p~~~ 88 (89)
T 1x64_A 22 AQRMPLCDKCGSGIV-GAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPSS 88 (89)
T ss_dssp CCSCCBCTTTCCBCC-SCCEESSSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSSSCCC
T ss_pred CCcCCCcccCCCEec-ccEEEECCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 356789999999995 7889999999999999999999999988899999999999999999999985
No 28
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=7.6e-15 Score=114.93 Aligned_cols=81 Identities=25% Similarity=0.569 Sum_probs=66.4
Q ss_pred CCcccccccccccccccccccCCcccCCCCcceEEecccccccccCCCCccCCCCcccccCCcCCCCCceEEccCCcccC
Q 016954 159 ENRPYHKSCYREHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLC 238 (380)
Q Consensus 159 dg~~YC~~cy~~~f~pkC~~C~~~I~~~~~~~i~~~~~~fw~qkycp~h~H~~CF~C~~C~r~l~~g~~f~~l~dg~~~C 238 (380)
+|+|||+.||.++|+++|..|+++|.+.. .++.+.+ ..||+.||+|..|+++|. +..|+ ..+|++||
T Consensus 1 ~g~~yC~~~y~~~~~~~C~~C~~~I~~~~-~~~~a~~----------~~~H~~CF~C~~C~~~L~-~~~f~-~~~~~~~C 67 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFANTCAECQQLIGHDS-RELFYED----------RHFHEGCFRCCRCQRSLA-DEPFT-CQDSELLC 67 (82)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCSSC-CBCCCSS----------CCCBTTTSBCTTTCCBCS-SCCEE-EETTEEEE
T ss_pred CCceechhHhCcccCCcCccCCCccccCc-EEEEeCC----------ccccccCCeecCCCCccC-CCccE-eeCCEEEC
Confidence 58999999999999999999999998421 3455555 357999999999999994 66777 46999999
Q ss_pred hhhhhhhccCCCCCCc
Q 016954 239 LECLDSAIMDTNECQP 254 (380)
Q Consensus 239 ~~C~~~~v~~~~~C~~ 254 (380)
..||.+ .+.++|+.
T Consensus 68 ~~c~~~--~~~~~C~~ 81 (82)
T 2ehe_A 68 NDCYCS--AFSSGPSS 81 (82)
T ss_dssp TTTSSC--CGGGSSCC
T ss_pred HHHHhh--hcCCCCCC
Confidence 999988 45667753
No 29
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.50 E-value=9.8e-15 Score=113.69 Aligned_cols=69 Identities=26% Similarity=0.632 Sum_probs=63.2
Q ss_pred CCCCCCccccCCcccccCceEeeCCceecCCCcccCCCCCCCCCceeeccCCcccccccccccccccccc
Q 016954 109 FPEGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDV 178 (380)
Q Consensus 109 ~~~~~~~C~~C~~~I~~g~~v~alg~~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~cy~~~f~pkC~~ 178 (380)
.....++|++|+++|. +++|.++++.||++||+|..|+++|.+..|+..++++||+.||.++|+++|..
T Consensus 11 ~~~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f~~~C~~ 79 (80)
T 1x3h_A 11 LAMFSPKCGGCNRPVL-ENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRGSGPSS 79 (80)
T ss_dssp CCCCSCBCTTTCCBCC-SSCEEETTEEECTTTCBCSSSCCBSCSSCCEESSSCEECHHHHHHHHSSSCCC
T ss_pred hhhcCCccccCCCeec-ceeEEECCCeEecCcCChhhCCCCCCCCcEEeECCEEECHHHHHHHcCCCCCC
Confidence 3345689999999995 68899999999999999999999999888999999999999999999999964
No 30
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.50 E-value=1.7e-14 Score=112.35 Aligned_cols=69 Identities=23% Similarity=0.584 Sum_probs=63.1
Q ss_pred CCCCCCccccCCcccccCceEeeCCceecCCCcccCCCCCCCCCceeeccCCcccccccccccccccccc
Q 016954 109 FPEGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDV 178 (380)
Q Consensus 109 ~~~~~~~C~~C~~~I~~g~~v~alg~~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~cy~~~f~pkC~~ 178 (380)
.....++|.+|+++|. +++|.++++.||+.||+|..|+++|.+..|+..++++||+.||.++|+++|+.
T Consensus 11 ~~~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~s 79 (80)
T 2cuq_A 11 ENKFAPRCARCSKTLT-QGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFASGPSS 79 (80)
T ss_dssp CCCSSCCCTTTCCCCC-SCCEESSSSEECTTTCBCSSSCCBCTTCCEEECSSSEEEHHHHHHHTTCSTTC
T ss_pred ccccCCcCCCCCCEec-CcEEEECCchhhhhhCCcccCCCcCCCCeeEeECCEEECHHHHHHHcCCCCCC
Confidence 3446689999999994 67899999999999999999999999889999999999999999999999964
No 31
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.49 E-value=2.4e-14 Score=111.50 Aligned_cols=79 Identities=16% Similarity=0.460 Sum_probs=67.1
Q ss_pred CCcccccccccccccccccccCCcccCCCCcceEEecccccccccCCCCccCCCCcccccCCcCCCCCceEEccCCcccC
Q 016954 159 ENRPYHKSCYREHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLC 238 (380)
Q Consensus 159 dg~~YC~~cy~~~f~pkC~~C~~~I~~~~~~~i~~~~~~fw~qkycp~h~H~~CF~C~~C~r~l~~g~~f~~l~dg~~~C 238 (380)
+|++||+.||.++|+++|..|+++|.++ .|.+.++ .||..||+|..|+++| .+..|+ ..+|++||
T Consensus 1 gg~~yC~~cy~~~~~~~C~~C~~~I~~~---~v~a~~~----------~~H~~CF~C~~C~~~L-~~~~~~-~~~~~~yC 65 (80)
T 2cuq_A 1 GSSGSSGPCYENKFAPRCARCSKTLTQG---GVTYRDQ----------PWHRECLVCTGCQTPL-AGQQFT-SRDEDPYC 65 (80)
T ss_dssp CCCCSCCCCCCCCSSCCCTTTCCCCCSC---CEESSSS----------EECTTTCBCSSSCCBC-TTCCEE-ECSSSEEE
T ss_pred CCcEEcHHHHccccCCcCCCCCCEecCc---EEEECCc----------hhhhhhCCcccCCCcC-CCCeeE-eECCEEEC
Confidence 5899999999999999999999999864 4666653 5799999999999999 466787 57999999
Q ss_pred hhhhhhhccCCCCCCc
Q 016954 239 LECLDSAIMDTNECQP 254 (380)
Q Consensus 239 ~~C~~~~v~~~~~C~~ 254 (380)
..||.+ ++.+.|+.
T Consensus 66 ~~cy~~--~f~~~c~s 79 (80)
T 2cuq_A 66 VACFGE--LFASGPSS 79 (80)
T ss_dssp HHHHHH--HTTCSTTC
T ss_pred HHHHHH--HcCCCCCC
Confidence 999998 56777753
No 32
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.49 E-value=1.2e-14 Score=110.32 Aligned_cols=66 Identities=29% Similarity=0.672 Sum_probs=60.9
Q ss_pred CCCCccccCCcccccCceEeeCCceecCCCcccCCCCCCCCCceeeccCCccccccccccccccccc
Q 016954 111 EGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCD 177 (380)
Q Consensus 111 ~~~~~C~~C~~~I~~g~~v~alg~~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~cy~~~f~pkC~ 177 (380)
.+.++|.+|+++|. ++++.++++.||++||+|..|+++|.+..|+..++++||+.||.++|+++..
T Consensus 3 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~~ 68 (70)
T 2d8x_A 3 SGSSGCHQCGEFII-GRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASGPS 68 (70)
T ss_dssp CCSSBCSSSCCBCC-SCCEEETTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCCCSC
T ss_pred CCCCcCccCCCEec-ceEEEECcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCCCCC
Confidence 46789999999995 8899999999999999999999999998999999999999999999988753
No 33
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.47 E-value=4.5e-14 Score=110.96 Aligned_cols=68 Identities=18% Similarity=0.337 Sum_probs=61.0
Q ss_pred CCCCCccccCCcccccCceEeeCCceecCCCcccCCCCCCCCCceee--ccCCccccccccccccccccc
Q 016954 110 PEGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFS--TSENRPYHKSCYREHYHPKCD 177 (380)
Q Consensus 110 ~~~~~~C~~C~~~I~~g~~v~alg~~wH~~CF~C~~C~~~L~~~~f~--~~dg~~YC~~cy~~~f~pkC~ 177 (380)
..+.++|.+|+++|+.++.|.++++.||++||+|..|+++|....|+ ..+|++||+.||.++|.+.+.
T Consensus 12 ~~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~ 81 (82)
T 2co8_A 12 AGAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSGPSS 81 (82)
T ss_dssp CCSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCCCCCC
T ss_pred CCCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhcCCCC
Confidence 45678999999999888899999999999999999999999998887 479999999999999876543
No 34
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.47 E-value=3.6e-14 Score=110.46 Aligned_cols=79 Identities=15% Similarity=0.211 Sum_probs=66.7
Q ss_pred CCcccccccccccccccccccCCcccCCCCcceEEecccccccccCCCCccCCCCcccccCCcCCCCCceEEccCCcccC
Q 016954 159 ENRPYHKSCYREHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLC 238 (380)
Q Consensus 159 dg~~YC~~cy~~~f~pkC~~C~~~I~~~~~~~i~~~~~~fw~qkycp~h~H~~CF~C~~C~r~l~~g~~f~~l~dg~~~C 238 (380)
+|++||+.||.++|+++|..|+++|.++ .|.+.++ .||+.||+|..|+++|.. ..|+ ..+|++||
T Consensus 1 gg~~yC~~~y~~~~~~~C~~C~~~I~~~---~v~a~~~----------~~H~~CF~C~~C~~~L~~-~~~~-~~~~~~yC 65 (80)
T 1x3h_A 1 GSSGSSGKDFLAMFSPKCGGCNRPVLEN---YLSAMDT----------VWHPECFVCGDCFTSFST-GSFF-ELDGRPFC 65 (80)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCSS---CEEETTE----------EECTTTCBCSSSCCBSCS-SCCE-ESSSCEEC
T ss_pred CCCccchhHHhhhcCCccccCCCeecce---eEEECCC----------eEecCcCChhhCCCCCCC-CcEE-eECCEEEC
Confidence 5789999999999999999999999974 4777764 469999999999999954 4677 46999999
Q ss_pred hhhhhhhccCCCCCCc
Q 016954 239 LECLDSAIMDTNECQP 254 (380)
Q Consensus 239 ~~C~~~~v~~~~~C~~ 254 (380)
..||.+ ++.++|+.
T Consensus 66 ~~~y~~--~f~~~C~~ 79 (80)
T 1x3h_A 66 ELHYHH--RRGSGPSS 79 (80)
T ss_dssp HHHHHH--HHSSSCCC
T ss_pred HHHHHH--HcCCCCCC
Confidence 999998 45677764
No 35
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.46 E-value=4e-14 Score=110.54 Aligned_cols=75 Identities=15% Similarity=0.334 Sum_probs=63.8
Q ss_pred CCcccccccccccccccccccCCcccCCCCcceEEecccccccccCCCCccCCCCcccccCCcCCCCCceEEccCCcccC
Q 016954 159 ENRPYHKSCYREHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLC 238 (380)
Q Consensus 159 dg~~YC~~cy~~~f~pkC~~C~~~I~~~~~~~i~~~~~~fw~qkycp~h~H~~CF~C~~C~r~l~~g~~f~~l~dg~~~C 238 (380)
++.+||+.||.++|+++|..|+++|.+. .|.+.++ .||+.||+|..|+++|..+..|+...+|++||
T Consensus 1 g~~~yC~~~y~~~~~~~C~~C~~~I~~~---~~~a~~~----------~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C 67 (81)
T 1x6a_A 1 GSSGSSGKDYWGKFGEFCHGCSLLMTGP---FMVAGEF----------KYHPECFACMSCKVIIEDGDAYALVQHATLYC 67 (81)
T ss_dssp CCCCCCCCCSSCCSSCBCTTTCCBCCSC---CBCCTTC----------CBCTTSCBCTTTCCBCCTTSCEEECSSSCEEE
T ss_pred CCCccchhHHhhhcCCcCccCCCCcCce---EEEECCc----------eeccccCCccCCCCccCCCCcEEEeeCCEEEC
Confidence 4689999999999999999999999954 4666653 57999999999999997677776447999999
Q ss_pred hhhhhhhc
Q 016954 239 LECLDSAI 246 (380)
Q Consensus 239 ~~C~~~~v 246 (380)
..||.++.
T Consensus 68 ~~c~~~~~ 75 (81)
T 1x6a_A 68 GKCHNEVV 75 (81)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999854
No 36
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.46 E-value=6.6e-14 Score=109.40 Aligned_cols=79 Identities=16% Similarity=0.305 Sum_probs=66.5
Q ss_pred CCcccccccccccccccccccCCcccCCCCcceEEecccccccccCCCCccCCCCcccccCCcCCCCCceEEccCCcccC
Q 016954 159 ENRPYHKSCYREHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLC 238 (380)
Q Consensus 159 dg~~YC~~cy~~~f~pkC~~C~~~I~~~~~~~i~~~~~~fw~qkycp~h~H~~CF~C~~C~r~l~~g~~f~~l~dg~~~C 238 (380)
+|++||+.||. ++.++|..|+++|.+. +|.+.++ .||+.||+|..|+++|. +..|+...+|++||
T Consensus 2 ~g~~yC~~~y~-~~~~~C~~C~~~I~~~---~~~a~~~----------~~H~~CF~C~~C~~~L~-~~~f~~~~~g~~yC 66 (81)
T 2dlo_A 2 SSGSSGEGCYV-ATLEKCATCSQPILDR---ILRAMGK----------AYHPGCFTCVVCHRGLD-GIPFTVDATSQIHC 66 (81)
T ss_dssp CCCCCCCCCCC-SSCCBCTTTCCBCCSC---CEEETTE----------EECTTTCBCSSSCCBCT-TSCEECCTTCCCEE
T ss_pred cCCEECHHHhh-cCCCccccCCCeecce---eEEECCc----------cccHHhcCcccCCCccC-CCeeEECCCCEEEC
Confidence 68999999999 7999999999999853 5777764 46999999999999994 66777444799999
Q ss_pred hhhhhhhccCCCCCCc
Q 016954 239 LECLDSAIMDTNECQP 254 (380)
Q Consensus 239 ~~C~~~~v~~~~~C~~ 254 (380)
..||.+ .+.++|+.
T Consensus 67 ~~cy~~--~f~~~C~~ 80 (81)
T 2dlo_A 67 IEDFHR--KFASGPSS 80 (81)
T ss_dssp HHHHHH--HTTSSSCC
T ss_pred HHHHHH--HhcCcCCC
Confidence 999998 56778864
No 37
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.45 E-value=6.8e-14 Score=109.37 Aligned_cols=69 Identities=23% Similarity=0.494 Sum_probs=62.7
Q ss_pred CCCCCCccccCCccccc-CceEeeCCceecCCCcccCCCCCCCCCceeeccCCccccccccccccccccc
Q 016954 109 FPEGYRICAGCNNEIGH-GRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCD 177 (380)
Q Consensus 109 ~~~~~~~C~~C~~~I~~-g~~v~alg~~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~cy~~~f~pkC~ 177 (380)
.....++|.+|+++|.. +.+|.++++.||++||+|..|+++|.+..|+..++++||+.||.++|+++|.
T Consensus 11 ~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~~~ 80 (82)
T 1x63_A 11 TREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFASGPS 80 (82)
T ss_dssp SCCCSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTSCEEEETTEEEEHHHHHHHTSCCCS
T ss_pred ccccCCcCccCCcccccCceEEEECccccccccCchhhCCCccCCCccEeeCCEEECHHHHHHHhCCCCC
Confidence 34456899999999965 4679999999999999999999999998999999999999999999999985
No 38
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.45 E-value=3.5e-14 Score=110.81 Aligned_cols=65 Identities=22% Similarity=0.331 Sum_probs=59.6
Q ss_pred CCCCccccCCcccccCceEeeCCceecCCCcccCCCCCCCCCceeeccCCccccccccccccccccc
Q 016954 111 EGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCD 177 (380)
Q Consensus 111 ~~~~~C~~C~~~I~~g~~v~alg~~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~cy~~~f~pkC~ 177 (380)
.+.++|.+|+++|. +++|.++++.||++||+|..|+++|.+..| ..+|++||+.||.++|+|++.
T Consensus 13 ~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f-~~~g~~yC~~cy~~~f~p~~s 77 (79)
T 2cor_A 13 LGKYICQKCHAIID-EQPLIFKNDPYHPDHFNCANCGKELTADAR-ELKGELYCLPCHDKMGVSGPS 77 (79)
T ss_dssp CCCCBCTTTCCBCC-SCCCCCSSSCCCTTTSBCSSSCCBCCTTCE-EETTEEECHHHHHTTSCCSSC
T ss_pred cCCCCCccCCCEec-ceEEEECcceeCCCCCEeCCCCCccCCCCE-eECCEEeCHHHHHHhCCCCCC
Confidence 46789999999996 899999999999999999999999998754 889999999999999999775
No 39
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.44 E-value=4.8e-14 Score=107.54 Aligned_cols=68 Identities=26% Similarity=0.615 Sum_probs=59.8
Q ss_pred CCCCccccCCccccc-CceEeeCCceecCCCcccCCCCCCCCCceeeccCCccccccccccccccccccc
Q 016954 111 EGYRICAGCNNEIGH-GRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDVC 179 (380)
Q Consensus 111 ~~~~~C~~C~~~I~~-g~~v~alg~~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~cy~~~f~pkC~~C 179 (380)
.+.++|.+|+++|.. +.++.++++.||+.||+|..|+++|.+..|+..++++||+.||.++| .+|..+
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~-~~~~~~ 71 (72)
T 1x61_A 3 SGSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATL-ESGPSS 71 (72)
T ss_dssp SCCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHH-HTCSSC
T ss_pred CCCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHH-ccCCCC
Confidence 356899999999975 46899999999999999999999999888999999999999999887 455543
No 40
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=6.3e-14 Score=108.28 Aligned_cols=73 Identities=21% Similarity=0.490 Sum_probs=62.0
Q ss_pred CCcccccccccccccccccccCCcccC---CCCcceEEecccccccccCCCCccCCCCcccccCCcCCCCCceEEccCCc
Q 016954 159 ENRPYHKSCYREHYHPKCDVCKHFIPS---NHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGR 235 (380)
Q Consensus 159 dg~~YC~~cy~~~f~pkC~~C~~~I~~---~~~~~i~~~~~~fw~qkycp~h~H~~CF~C~~C~r~l~~g~~f~~l~dg~ 235 (380)
++++||+.||.++|+++|..|+++|.+ . ...+.+.++ +||..||+|..|+++|. +..|+ ..+|+
T Consensus 1 g~~~yC~~cy~~~~~~~C~~C~~~I~~~g~~-~~~~~a~~~----------~~H~~CF~C~~C~~~L~-~~~f~-~~~~~ 67 (77)
T 2egq_A 1 GSSGSSGDCYKNFVAKKCAGCKNPITGFGKG-SSVVAYEGQ----------SWHDYCFHCKKCSVNLA-NKRFV-FHQEQ 67 (77)
T ss_dssp CCSSCCTTCCCSCCCCCCSSSCCCCCCCSSC-CCEEEETTE----------EEETTTCBCSSSCCBCT-TSCCC-EETTE
T ss_pred CCCeEchhHhchhhCccCcccCCcccCCCCC-ceeEEECcc----------eeCcccCEehhcCCCCC-CCccE-eECCE
Confidence 478999999999999999999999996 2 235777664 47999999999999994 66777 56999
Q ss_pred ccChhhhhh
Q 016954 236 KLCLECLDS 244 (380)
Q Consensus 236 ~~C~~C~~~ 244 (380)
+||..||.+
T Consensus 68 ~yC~~cy~~ 76 (77)
T 2egq_A 68 VYCPDCAKK 76 (77)
T ss_dssp ECCHHHHHH
T ss_pred EEChHHhcc
Confidence 999999975
No 41
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.43 E-value=9.4e-14 Score=125.88 Aligned_cols=74 Identities=20% Similarity=0.462 Sum_probs=69.2
Q ss_pred CCCCccccCCcccccCceEeeCCceecCCCcccCCCCCCCCCceeeccCCcccccccccccccccccccCCccc
Q 016954 111 EGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDVCKHFIP 184 (380)
Q Consensus 111 ~~~~~C~~C~~~I~~g~~v~alg~~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~cy~~~f~pkC~~C~~~I~ 184 (380)
.+.++|.+|+++|..++.|.++++.||++||+|..|+++|.+..|+..+|++||+.||.++|+++|..|++.+.
T Consensus 113 ~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~kc~~C~~~~g 186 (192)
T 1b8t_A 113 GGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQGAG 186 (192)
T ss_dssp CCCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHTCCCCCCCCCCCC
T ss_pred CCCCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCcccccCCEEeCHHHHHHhcCCcCCCCCCccc
Confidence 35678999999997788999999999999999999999999888999999999999999999999999999864
No 42
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.43 E-value=5.6e-14 Score=108.02 Aligned_cols=63 Identities=25% Similarity=0.536 Sum_probs=57.2
Q ss_pred CCCCccccCCcccccCceEeeCCceecCCCcccCCCCCCCC-CceeeccCCcccccccccccccc
Q 016954 111 EGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPIT-DIEFSTSENRPYHKSCYREHYHP 174 (380)
Q Consensus 111 ~~~~~C~~C~~~I~~g~~v~alg~~wH~~CF~C~~C~~~L~-~~~f~~~dg~~YC~~cy~~~f~p 174 (380)
.+.++|++|+++| .+++|.++++.||++||+|..|+++|. +..|+..++++||+.||.+++..
T Consensus 3 ~~~~~C~~C~~~I-~~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~ 66 (73)
T 1wig_A 3 SGSSGCDSCEKYI-TGRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTE 66 (73)
T ss_dssp CSCCSCSSSCCCC-SSCCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSSS
T ss_pred cCcCCcccCCCEe-cCeeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhcc
Confidence 3567999999999 578999999999999999999999998 77899999999999999987654
No 43
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.40 E-value=2.4e-13 Score=106.27 Aligned_cols=80 Identities=16% Similarity=0.354 Sum_probs=64.8
Q ss_pred CCcccccccccccccccccccCCcccCCCCcceEEecccccccccCCCCccCCCCcccccCCcCCCCCceEEccCCcccC
Q 016954 159 ENRPYHKSCYREHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLC 238 (380)
Q Consensus 159 dg~~YC~~cy~~~f~pkC~~C~~~I~~~~~~~i~~~~~~fw~qkycp~h~H~~CF~C~~C~r~l~~g~~f~~l~dg~~~C 238 (380)
++.+||+.||.++|+++|..|++.|.+.+ .+|.+.++ .||+.||+|..|+++|.. ..|+ ..+|++||
T Consensus 1 ~~~~yC~~cy~~~~~~~C~~C~~~I~~~~-~~~~a~~~----------~~H~~CF~C~~C~~~L~~-~~~~-~~~~~~yC 67 (82)
T 1x63_A 1 GSSGSSGKCTTREDSPKCKGCFKAIVAGD-QNVEYKGT----------VWHKDCFTCSNCKQVIGT-GSFF-PKGEDFYC 67 (82)
T ss_dssp CCSCCCCCCCSCCCSCBCSSSCCBCCSSS-CEEECSSC----------EEETTTCCCSSSCCCCTT-SCEE-EETTEEEE
T ss_pred CCCcCchhHHccccCCcCccCCcccccCc-eEEEECcc----------ccccccCchhhCCCccCC-CccE-eeCCEEEC
Confidence 46899999999999999999999998542 34666653 579999999999999954 4677 46999999
Q ss_pred hhhhhhhccCCCCCC
Q 016954 239 LECLDSAIMDTNECQ 253 (380)
Q Consensus 239 ~~C~~~~v~~~~~C~ 253 (380)
..||.++ +.++|.
T Consensus 68 ~~cy~~~--f~~~~~ 80 (82)
T 1x63_A 68 VTCHETK--FASGPS 80 (82)
T ss_dssp HHHHHHH--TSCCCS
T ss_pred HHHHHHH--hCCCCC
Confidence 9999984 455553
No 44
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.38 E-value=2.8e-13 Score=114.37 Aligned_cols=73 Identities=18% Similarity=0.279 Sum_probs=65.9
Q ss_pred CccccCCccccc-CceEeeCCceecCCCcccCCCCCCC-CCceeeccCCcccccccccccccccccccCCcccCC
Q 016954 114 RICAGCNNEIGH-GRFLNCLDVFWHPECFCCHACHQPI-TDIEFSTSENRPYHKSCYREHYHPKCDVCKHFIPSN 186 (380)
Q Consensus 114 ~~C~~C~~~I~~-g~~v~alg~~wH~~CF~C~~C~~~L-~~~~f~~~dg~~YC~~cy~~~f~pkC~~C~~~I~~~ 186 (380)
++|++|++.|.. +.++.++++.||+.||+|..|+++| .+..|+..++++||+.||.++|+++|..|+..+...
T Consensus 9 ~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~~~~ 83 (123)
T 2l3k_A 9 GLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGSGGSGGSGG 83 (123)
T ss_dssp CCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHHHTCCCCCCSCCS
T ss_pred CcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhccccCCCCCCCccC
Confidence 489999999975 4678999999999999999999999 466799999999999999999999999998887654
No 45
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.37 E-value=2.5e-13 Score=102.97 Aligned_cols=63 Identities=21% Similarity=0.517 Sum_probs=56.8
Q ss_pred CCCCccccCCcccccCc-eEeeCCceecCCCcccCCCCCCCCCceeeccCCccccccccccccc
Q 016954 111 EGYRICAGCNNEIGHGR-FLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYH 173 (380)
Q Consensus 111 ~~~~~C~~C~~~I~~g~-~v~alg~~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~cy~~~f~ 173 (380)
...++|++|+++|..++ ++.++++.||++||+|..|+++|.+..|+..+|++||+.||.++|+
T Consensus 9 ~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 9 SASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp CTTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHHTC
T ss_pred cCCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHhhC
Confidence 46689999999997555 5789999999999999999999998899999999999999998874
No 46
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.37 E-value=3e-13 Score=114.52 Aligned_cols=63 Identities=22% Similarity=0.594 Sum_probs=56.7
Q ss_pred CCCCccccCCcccccCceEeeCCceecCCCcccCCCCCCCC--CceeeccCCccccccccccccc
Q 016954 111 EGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPIT--DIEFSTSENRPYHKSCYREHYH 173 (380)
Q Consensus 111 ~~~~~C~~C~~~I~~g~~v~alg~~wH~~CF~C~~C~~~L~--~~~f~~~dg~~YC~~cy~~~f~ 173 (380)
...++|++|+++|....++.++++.||+.||+|..|+++|. +..|+.++|++||+.||.++|+
T Consensus 59 ~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 59 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp SSCSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred ccCCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 45689999999997556799999999999999999999997 4689999999999999998875
No 47
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.36 E-value=2.8e-13 Score=105.73 Aligned_cols=68 Identities=25% Similarity=0.549 Sum_probs=60.6
Q ss_pred CCCCCCccccCCcccccCceEeeCCceecCCCcccCCCCCCCCC-ceee-ccCCccccccccccccccccc
Q 016954 109 FPEGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITD-IEFS-TSENRPYHKSCYREHYHPKCD 177 (380)
Q Consensus 109 ~~~~~~~C~~C~~~I~~g~~v~alg~~wH~~CF~C~~C~~~L~~-~~f~-~~dg~~YC~~cy~~~f~pkC~ 177 (380)
.....++|++|+++|. +++|.++++.||++||+|..|+++|.. ..|+ ..++++||+.||.++|++.|.
T Consensus 11 ~~~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~~~s 80 (81)
T 1x6a_A 11 WGKFGEFCHGCSLLMT-GPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSGPSS 80 (81)
T ss_dssp SCCSSCBCTTTCCBCC-SCCBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHCTTSC
T ss_pred hhhcCCcCccCCCCcC-ceEEEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhcCCCC
Confidence 3446689999999996 899999999999999999999999974 6677 589999999999999998876
No 48
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.33 E-value=4.3e-13 Score=100.61 Aligned_cols=59 Identities=25% Similarity=0.635 Sum_probs=54.3
Q ss_pred CCccccCCccccc-CceEeeCCceec--CCCcccCCCCCCCCCceeeccCCcccc-ccccccc
Q 016954 113 YRICAGCNNEIGH-GRFLNCLDVFWH--PECFCCHACHQPITDIEFSTSENRPYH-KSCYREH 171 (380)
Q Consensus 113 ~~~C~~C~~~I~~-g~~v~alg~~wH--~~CF~C~~C~~~L~~~~f~~~dg~~YC-~~cy~~~ 171 (380)
.++|.+|+++|.. ++.|.++++.|| ++||+|..|+++|.+..|+..+|++|| .+||.++
T Consensus 2 a~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 2 AVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp CEECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred cCCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence 4689999999976 589999999999 999999999999999999999999999 8898764
No 49
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=6.9e-13 Score=102.37 Aligned_cols=62 Identities=24% Similarity=0.554 Sum_probs=55.8
Q ss_pred CCCCCCccccCCccccc----CceEeeCCceecCCCcccCCCCCCCCCceeeccCCcccccccccc
Q 016954 109 FPEGYRICAGCNNEIGH----GRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYRE 170 (380)
Q Consensus 109 ~~~~~~~C~~C~~~I~~----g~~v~alg~~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~cy~~ 170 (380)
.....++|++|+++|.. .+++.++++.||+.||+|..|+++|.+..|+..+|++||+.||.+
T Consensus 11 ~~~~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~yC~~cy~~ 76 (77)
T 2egq_A 11 KNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKK 76 (77)
T ss_dssp CSCCCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTTSCCCEETTEECCHHHHHH
T ss_pred chhhCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCCCccEeECCEEEChHHhcc
Confidence 34456899999999962 388999999999999999999999999899999999999999965
No 50
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.31 E-value=1.9e-12 Score=101.08 Aligned_cols=73 Identities=16% Similarity=0.346 Sum_probs=60.2
Q ss_pred CcccccccccccccccccccCCcccCCCCcceEEecccccccccCCCCccCCCCcccccCCcCCCCCceEEccCCcccCh
Q 016954 160 NRPYHKSCYREHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCL 239 (380)
Q Consensus 160 g~~YC~~cy~~~f~pkC~~C~~~I~~~~~~~i~~~~~~fw~qkycp~h~H~~CF~C~~C~r~l~~g~~f~~l~dg~~~C~ 239 (380)
+.+||+.||.++|+++|..|+++|.++ .|.+.++ .||+.||+|..|+++|..+..|. ..++.+||.
T Consensus 2 ~~~yC~~dy~~~~~~~C~~C~~~I~~~---~v~a~~~----------~wH~~CF~C~~C~~~L~~~~~~~-~~~~~~~C~ 67 (81)
T 1v6g_A 2 SSGSSGLDYQRLYGTRCFSCDQFIEGE---VVSALGK----------TYHPDCFVCAVCRLPFPPGDRVT-FNGKECMCQ 67 (81)
T ss_dssp CCCCCCSCGGGSCCCBCTTTCCBCCSC---CEEETTE----------EECTTTSSCSSSCCCCCSSSCEE-EETTEEEEH
T ss_pred CCCcchHHHHhHhCCcCccccCEeccc---eEEECCc----------eeCccCCccccCCCCCCCCCEEE-eCCCCEECh
Confidence 568999999999999999999999964 5777764 46999999999999996565554 545557999
Q ss_pred hhhhhhc
Q 016954 240 ECLDSAI 246 (380)
Q Consensus 240 ~C~~~~v 246 (380)
.|+.++.
T Consensus 68 ~C~~~~~ 74 (81)
T 1v6g_A 68 KCSLPVS 74 (81)
T ss_dssp HHHSCCS
T ss_pred hhhcccC
Confidence 9998753
No 51
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.21 E-value=1.6e-12 Score=109.73 Aligned_cols=112 Identities=19% Similarity=0.248 Sum_probs=82.4
Q ss_pred cccccccccCCcccCCCCcceEEecccccccccCCCCccCCCCcccccCCcCCCCCceEEccCCcccChhhhhhhccCCC
Q 016954 171 HYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTN 250 (380)
Q Consensus 171 ~f~pkC~~C~~~I~~~~~~~i~~~~~~fw~qkycp~h~H~~CF~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~v~~~~ 250 (380)
+|.++|..|+++|.+.. ++.+.++ .||+.||+|..|+++| .+..|+ ..||++||..||.+ ...+
T Consensus 1 ~~~~~C~~C~~~I~~~~--~~~a~~~----------~~H~~CF~C~~C~~~L-~~~~f~-~~~g~~yC~~cy~~--~~~~ 64 (126)
T 2xqn_T 1 SEKPRCAGCDELIFSNE--YTQAENQ----------NWHLKHFCCFDCDSIL-AGEIYV-MVNDKPVCKPCYVK--NHAV 64 (126)
T ss_dssp -CCCBBTTTSSBCCSSC--EEEETTE----------EECGGGSBCTTTCCBC-TTSEEE-EETTEEEEHHHHHH--HSCC
T ss_pred CcCCCCccCCCEeCCce--EEeeCCC----------CccCCCCCcCCCCCCC-CcCEEE-eECCEEechHHhCc--CcCc
Confidence 36789999999998643 5677764 4699999999999998 466787 57999999999998 5789
Q ss_pred CCCcchHHHHHHHHHhcccccCcccchhhhHHHHHHHhc--CCC---------CCCCCCcccCCcccccccccc
Q 016954 251 ECQPLYLDIQEFYESIHMKLEQQIPLLLVERQALNEARD--GEK---------NGYYHMPETRGLCLSEEQTVT 313 (380)
Q Consensus 251 ~C~~c~~~I~~f~e~~~~~i~~~~p~~lv~~~aLn~~~~--~e~---------~g~~~~~e~rGl~~~E~~~~~ 313 (380)
.|..|.++|.. ...+ +.|+++.|+ .+. .....+...+|..||+.++..
T Consensus 65 ~C~~C~~~I~~---------~~~~------~~a~~~~~H~~~~CF~C~~C~~~l~~~~f~~~~~~~yC~~~~~~ 123 (126)
T 2xqn_T 65 VCQGCHNAIDP---------EVQR------VTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKK 123 (126)
T ss_dssp BCTTTCSBCCT---------TSCE------EEETTEEEESSTTTSBCTTTCCBCTTSEEEEETTEEESSHHHHH
T ss_pred cCcccCCcCCc---------CceE------EECCCCEeeCCCCCcCcCCCCCccCCCeeEeECCEEcchHHhhh
Confidence 99999966531 0111 246788888 541 122234577899999877754
No 52
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.16 E-value=1.9e-11 Score=109.78 Aligned_cols=122 Identities=12% Similarity=0.157 Sum_probs=87.8
Q ss_pred CCccccccccc---ccccccccccCCcccCCCCcceEEecccccccccCCCCccCCCCcccccCCcCCCCCceEEccCCc
Q 016954 159 ENRPYHKSCYR---EHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGR 235 (380)
Q Consensus 159 dg~~YC~~cy~---~~f~pkC~~C~~~I~~~~~~~i~~~~~~fw~qkycp~h~H~~CF~C~~C~r~l~~g~~f~~l~dg~ 235 (380)
++..||..++. ....++|..|+++|.+.. ++.+.++ .||+.||+|..|+++|. +..|. .||+
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~~--~~~a~~~----------~wH~~CF~C~~C~~~L~-~~~f~--~~g~ 107 (182)
T 2jtn_A 43 DDEGGSGGHMGSGGTPEIPMCAGCDQHILDRF--ILKALDR----------HWHSKCLKCSDCHVPLA-ERCFS--RGES 107 (182)
T ss_dssp SSSCSSSSSCCCCCCCSCCBCBTSSSBCCCSE--EEEETTE----------EECSSTTSCTTTCCCCS-SCCEE--ETTE
T ss_pred ccccccccccccCCCCCCCcCccCCCCccCce--eEEecCC----------eEccccCccCCCCCccC-CCcee--ECCE
Confidence 45567877765 455789999999998642 4566653 47999999999999985 44453 5999
Q ss_pred ccChhhhhhhccCCCCCCcchHHHHHHHHHhcccccCcccchhhhHHHHHHHhcCCC-----------CCCCCCcccCCc
Q 016954 236 KLCLECLDSAIMDTNECQPLYLDIQEFYESIHMKLEQQIPLLLVERQALNEARDGEK-----------NGYYHMPETRGL 304 (380)
Q Consensus 236 ~~C~~C~~~~v~~~~~C~~c~~~I~~f~e~~~~~i~~~~p~~lv~~~aLn~~~~~e~-----------~g~~~~~e~rGl 304 (380)
+||..||.+ .+.++|..|.+.|. ..--+ ..|+++.||.+. .|...+...+|.
T Consensus 108 ~yC~~~y~~--~f~~kC~~C~~~I~-----------~~~~v----~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~ 170 (182)
T 2jtn_A 108 VYCKDDFFK--RFGTKCAACQLGIP-----------PTQVV----RRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSR 170 (182)
T ss_dssp EECHHHHHH--TTSCCCTTTCCCCC-----------SSCCC----CEETTEECCTTTCCCTTTCCCCCTTCEEEECTTSC
T ss_pred eeecCcccc--ccccccccCCCccC-----------CCceE----EecCCCCEEeCCCcCCCCCCCCCCCCceEEccCCE
Confidence 999999998 67899999996553 21100 247888887652 133334456788
Q ss_pred cccccccc
Q 016954 305 CLSEEQTV 312 (380)
Q Consensus 305 ~~~E~~~~ 312 (380)
.||..+|.
T Consensus 171 ~yC~~cy~ 178 (182)
T 2jtn_A 171 LVCKADYE 178 (182)
T ss_dssp EECHHHHH
T ss_pred EECHHHHH
Confidence 89988775
No 53
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.14 E-value=2e-11 Score=95.11 Aligned_cols=61 Identities=23% Similarity=0.472 Sum_probs=52.2
Q ss_pred CCCCccccCCcccccCceEeeCCceecCCCcccCCCCCCCCCceeeccCCc-ccccccccccc
Q 016954 111 EGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENR-PYHKSCYREHY 172 (380)
Q Consensus 111 ~~~~~C~~C~~~I~~g~~v~alg~~wH~~CF~C~~C~~~L~~~~f~~~dg~-~YC~~cy~~~f 172 (380)
...++|++|+++|. +++|.++++.||++||+|..|+++|....|+..++. +||+.||.+++
T Consensus 13 ~~~~~C~~C~~~I~-~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~ 74 (81)
T 1v6g_A 13 LYGTRCFSCDQFIE-GEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVS 74 (81)
T ss_dssp SCCCBCTTTCCBCC-SCCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCCS
T ss_pred HhCCcCccccCEec-cceEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhcccC
Confidence 45679999999995 889999999999999999999999987666665665 69999997654
No 54
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.11 E-value=1.6e-11 Score=103.32 Aligned_cols=110 Identities=12% Similarity=0.034 Sum_probs=79.3
Q ss_pred cccccccccCCcccCCCCcceEEecccccccccCCCCccCCCCcccccCCcCC-CCCceEEccCCcccChhhhhhhccCC
Q 016954 171 HYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEP-QDTAYVALDDGRKLCLECLDSAIMDT 249 (380)
Q Consensus 171 ~f~pkC~~C~~~I~~~~~~~i~~~~~~fw~qkycp~h~H~~CF~C~~C~r~l~-~g~~f~~l~dg~~~C~~C~~~~v~~~ 249 (380)
++.++|..|+++|.+.. ++.+.++ .||+.||+|..|+++|. .+..|+ ..||++||..||.++....
T Consensus 3 ~~~~~C~~C~~~I~~~~--~~~a~~~----------~wH~~CF~C~~C~~~L~~~~~~~~-~~~g~~yC~~cy~~~f~~~ 69 (122)
T 1m3v_A 3 LSWKRCAGCGGKIADRF--LLYAMDS----------YWHSRCLKCSSCQAQLGDIGTSSY-TKSGMILCRNDYIRLFGNS 69 (122)
T ss_dssp SCCCCBSSSSSCCCSSC--CEEETTE----------EECHHHHCCSSSCCCTTTSEECCE-EETTEEECHHHHHHHHCCC
T ss_pred CCCCCCcccCCEeCCcE--EEEECCc----------eeHhhCCCcCCCCCcccccCCeEE-EECCeeecHHHHHHHcCCC
Confidence 56789999999999753 4677664 46999999999999985 256787 5799999999999954333
Q ss_pred CCCCcchHHHHHHHHHhcccccCcccchhhhHHHHHHHhcCCCCCCCCCcccCCcccccccccce
Q 016954 250 NECQPLYLDIQEFYESIHMKLEQQIPLLLVERQALNEARDGEKNGYYHMPETRGLCLSEEQTVTT 314 (380)
Q Consensus 250 ~~C~~c~~~I~~f~e~~~~~i~~~~p~~lv~~~aLn~~~~~e~~g~~~~~e~rGl~~~E~~~~~~ 314 (380)
..|+.|.++|.. .. + .++++ .......|...+|..||..|+...
T Consensus 70 ~~C~~C~~~I~~-----------~~-~-----~~~g~----~~l~g~~f~~~~~~~yC~~~~~~~ 113 (122)
T 1m3v_A 70 GAGGSGGHMGSG-----------GD-V-----MVVGE----PTLMGGEFGDEDERLITRLENTQF 113 (122)
T ss_dssp CSSSCSSCCSCC-----------EE-S-----SSSSS----SSCCSCTTCCTTCCCCEECTTTTT
T ss_pred CccccCCCCcCc-----------hh-e-----EEcCC----cCCCCCccEecCCEeEccCcchhc
Confidence 399999976641 11 0 11221 222233567899999999988744
No 55
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.09 E-value=7.9e-11 Score=90.27 Aligned_cols=63 Identities=21% Similarity=0.427 Sum_probs=52.7
Q ss_pred ccccccccccCCcccCCCCcceEEecccccccccCCCCccCCCCcccccCCcCCCCCceEEccCCcccChhhhhhhc
Q 016954 170 EHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAI 246 (380)
Q Consensus 170 ~~f~pkC~~C~~~I~~~~~~~i~~~~~~fw~qkycp~h~H~~CF~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~v 246 (380)
.+|+++|..|+++|.++ .|.+.++ +||+.||+|..|+++|..+..|+ ..+|.+||..||..+.
T Consensus 2 s~~~~~C~~C~~~I~~~---~v~a~~~----------~wH~~CF~C~~C~~~L~~~~~f~-~~~~~~yC~~C~~~~~ 64 (73)
T 1wig_A 2 SSGSSGCDSCEKYITGR---VLEAGEK----------HYHPSCALCVRCGQMFAEGEEMY-LQGSSIWHPACRQAAR 64 (73)
T ss_dssp CCSCCSCSSSCCCCSSC---CBCCSSC----------CBCTTTSCCSSSCCCCCSSCCCE-EETTEEECTTHHHHTS
T ss_pred CcCcCCcccCCCEecCe---eEEeCCC----------CCCCCcCEeCCCCCCCCCCCeeE-eeCCEEEChHHChHhh
Confidence 46789999999999974 4666653 57999999999999996677887 5699999999999854
No 56
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.05 E-value=8.1e-11 Score=90.62 Aligned_cols=71 Identities=18% Similarity=0.382 Sum_probs=58.8
Q ss_pred ccccccccccCCcccC--CCCcceEEecccccccccCCCCccCCCCcccccCCcCCCCCceEEccCCcccChhhhhhhcc
Q 016954 170 EHYHPKCDVCKHFIPS--NHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIM 247 (380)
Q Consensus 170 ~~f~pkC~~C~~~I~~--~~~~~i~~~~~~fw~qkycp~h~H~~CF~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~v~ 247 (380)
++|+++|..|+++|.+ . ...|.+.++ +||+.||+|..|+++|. +..|+ ..+|++||..||.+ .
T Consensus 2 ~~~~~~C~~C~~~I~~~g~-~~~~~a~~~----------~wH~~CF~C~~C~~~L~-~~~f~-~~~g~~yC~~cy~~--~ 66 (76)
T 1x68_A 2 SSGSSGCVACSKPISGLTG-AKFICFQDS----------QWHSECFNCGKCSVSLV-GKGFL-TQNKEIFCQKCGSG--M 66 (76)
T ss_dssp TTCCCCCTTTCCCCCTTTT-CCEEEETTE----------EEEGGGCBCTTTCCBCS-SSCEE-EETTEEEETTTTCC--C
T ss_pred CccCCCCccCCCcccCCCC-ceeEEECCc----------ccCcccCChhhCCCcCC-CCceE-eECCEEECHHHhhh--h
Confidence 4689999999999996 2 235777664 47999999999999994 77787 47999999999998 6
Q ss_pred CCCCCCcc
Q 016954 248 DTNECQPL 255 (380)
Q Consensus 248 ~~~~C~~c 255 (380)
+.+.|+++
T Consensus 67 f~~~C~~~ 74 (76)
T 1x68_A 67 DTDISGPS 74 (76)
T ss_dssp CCCSSSSS
T ss_pred hCCcCCCC
Confidence 78899876
No 57
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.04 E-value=2.6e-10 Score=90.72 Aligned_cols=76 Identities=14% Similarity=0.294 Sum_probs=61.2
Q ss_pred ccccccccccccccccccCCcccCCCCcceEEecccccccccCCCCccCCCCcccccCCcCCCCCceEEccCCcccChhh
Q 016954 162 PYHKSCYREHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLEC 241 (380)
Q Consensus 162 ~YC~~cy~~~f~pkC~~C~~~I~~~~~~~i~~~~~~fw~qkycp~h~H~~CF~C~~C~r~l~~g~~f~~l~dg~~~C~~C 241 (380)
+.+...+...+.++|..|+++|.++ .|.+.++ .||+.||+|..|+++|. +..|+ ..+|.+||..|
T Consensus 14 ~~~~~~~~~~~~~~C~~C~~~I~~~---~v~a~~~----------~~H~~CF~C~~C~~~L~-~~~f~-~~~g~~yC~~c 78 (90)
T 2dar_A 14 QRAEHIPAGKRTPMCAHCNQVIRGP---FLVALGK----------SWHPEEFNCAHCKNTMA-YIGFV-EEKGALYCELC 78 (90)
T ss_dssp BCCEEECTTTCCCBBSSSCCBCCSC---EEEETTE----------EECTTTCBCSSSCCBCS-SSCBE-ESSSCEECHHH
T ss_pred hhcccCCCCCCCCCCccCCCEecce---EEEECCc----------cccccCCccCCCCCCCC-CCEeE-eECCEEECHHH
Confidence 3455567778899999999999754 5777664 46999999999999995 56777 57999999999
Q ss_pred hhhhccCCCCCCc
Q 016954 242 LDSAIMDTNECQP 254 (380)
Q Consensus 242 ~~~~v~~~~~C~~ 254 (380)
|.+ .+.++|+.
T Consensus 79 y~~--~f~~~c~s 89 (90)
T 2dar_A 79 YEK--FFASGPSS 89 (90)
T ss_dssp HHH--HTSCCCCC
T ss_pred HHH--HcCCCCCC
Confidence 998 56778763
No 58
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.03 E-value=6.6e-11 Score=95.75 Aligned_cols=74 Identities=23% Similarity=0.501 Sum_probs=60.7
Q ss_pred cccccccccCCcccCCCCcceEEecccccccccCCCCccCCCCcccccCCcCCCCCceEEccCCcccChhhhhhhccCCC
Q 016954 171 HYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTN 250 (380)
Q Consensus 171 ~f~pkC~~C~~~I~~~~~~~i~~~~~~fw~qkycp~h~H~~CF~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~v~~~~ 250 (380)
++.++|..|+++|..+. .++.+.++ .||..||+|..|+++| .+..|+ ..||++||..||.+ .+.+
T Consensus 3 ~~~~~C~~C~~~I~~~~-~~~~a~~~----------~~H~~CF~C~~C~~~L-~~~~~~-~~~g~~yC~~cy~~--~~~~ 67 (101)
T 2cup_A 3 SGSSGCVECRKPIGADS-KEVHYKNR----------FWHDTCFRCAKCLHPL-ANETFV-AKDNKILCNKCTTR--EDSP 67 (101)
T ss_dssp SCCCBCSSSCCBCCSSS-CEEEETTE----------EEETTTCCCSSSCCCT-TSSCCE-EETTEEECHHHHTT--CCCC
T ss_pred CCCCcCcccCCcccCCc-eEEEECcc----------ChhhcCCcccccCCCC-CcCeeE-CcCCEEEChhHhhh--hcCC
Confidence 46789999999997421 35677664 4699999999999999 566777 57999999999998 6789
Q ss_pred CCCcchHHH
Q 016954 251 ECQPLYLDI 259 (380)
Q Consensus 251 ~C~~c~~~I 259 (380)
+|..|.++|
T Consensus 68 ~C~~C~~~I 76 (101)
T 2cup_A 68 KCKGCFKAI 76 (101)
T ss_dssp BCSSSCCBC
T ss_pred ccccCCCcc
Confidence 999999655
No 59
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.01 E-value=2.5e-10 Score=86.23 Aligned_cols=68 Identities=19% Similarity=0.387 Sum_probs=55.1
Q ss_pred ccccccccccCCcccCCCCcceEEecccccccccCCCCccCCCCcccccCCcCCCCCceEEccCCcccChhhhhhhccCC
Q 016954 170 EHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDT 249 (380)
Q Consensus 170 ~~f~pkC~~C~~~I~~~~~~~i~~~~~~fw~qkycp~h~H~~CF~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~v~~~ 249 (380)
+++.++|..|+++|.++ .|.+.++ .||+.||+|..|+++| .+..|+ ..+|++||..||.+ .+.
T Consensus 2 ~~~~~~C~~C~~~I~~~---~~~a~~~----------~~H~~CF~C~~C~~~L-~~~~~~-~~~~~~yC~~cy~~--~f~ 64 (70)
T 2d8z_A 2 SSGSSGCVQCKKPITTG---GVTYREQ----------PWHKECFVCTACRKQL-SGQRFT-ARDDFAYCLNCFCD--LYA 64 (70)
T ss_dssp CCCCCBCSSSCCBCCSS---EEESSSS----------EEETTTSBCSSSCCBC-TTSCCE-ESSSSEECHHHHHH--HTC
T ss_pred CCCCCCCcccCCeeccc---eEEECcc----------ccCCCCCccCCCCCcC-CcCceE-eeCCeEECHHHHHH--Hhc
Confidence 35789999999999864 3666653 4799999999999999 466777 56999999999998 567
Q ss_pred CCCCc
Q 016954 250 NECQP 254 (380)
Q Consensus 250 ~~C~~ 254 (380)
++|..
T Consensus 65 ~~c~~ 69 (70)
T 2d8z_A 65 SGPSS 69 (70)
T ss_dssp CCCTT
T ss_pred cccCC
Confidence 77763
No 60
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.01 E-value=1.4e-10 Score=104.65 Aligned_cols=67 Identities=13% Similarity=0.305 Sum_probs=54.3
Q ss_pred ccccCCcccccC-ceEeeCCceecCCCcccCCCCCCCC-CceeeccCCcccccccccccccccccccCC
Q 016954 115 ICAGCNNEIGHG-RFLNCLDVFWHPECFCCHACHQPIT-DIEFSTSENRPYHKSCYREHYHPKCDVCKH 181 (380)
Q Consensus 115 ~C~~C~~~I~~g-~~v~alg~~wH~~CF~C~~C~~~L~-~~~f~~~dg~~YC~~cy~~~f~pkC~~C~~ 181 (380)
+|.+|+++|... .++.++++.||+.||+|..|+++|. +..|+..++++||+.||.+++.++|...+.
T Consensus 71 ~C~~C~~~I~~~e~~i~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~c~~~~~~~~~~~~g~ 139 (188)
T 1rut_X 71 ACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTALINGHLNSGG 139 (188)
T ss_dssp ECTTTCCEECTTSEEEEETTEEECGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGCCTTTC--------
T ss_pred ccccCCCccccCcEEEEcCCCEEeCCCCeECCCCCCCCCCCeEEEECCeEECHHHHHHHhcccccccCC
Confidence 799999999654 5789999999999999999999996 567999999999999999999999987765
No 61
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.01 E-value=3.5e-10 Score=85.98 Aligned_cols=68 Identities=15% Similarity=0.321 Sum_probs=53.0
Q ss_pred cccccccccCCcccCC-CCcceEEecccccccccCCCCccCCCCcccccCCcCCCCCceEEccCCcccChhhhhhhccCC
Q 016954 171 HYHPKCDVCKHFIPSN-HGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDT 249 (380)
Q Consensus 171 ~f~pkC~~C~~~I~~~-~~~~i~~~~~~fw~qkycp~h~H~~CF~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~v~~~ 249 (380)
.+.++|..|+++|.+. +..+|.+.++ +||+.||+|..|+++|. +..|+ ..+|++||..||.+ ++.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~~~a~~~----------~wH~~CF~C~~C~~~L~-~~~f~-~~~g~~yC~~c~~~--~~~ 68 (72)
T 1x4l_A 3 SGSSGCAGCTNPISGLGGTKYISFEER----------QWHNDCFNCKKCSLSLV-GRGFL-TERDDILCPDCGKD--ISG 68 (72)
T ss_dssp SCSCSBTTTTBCCCCSSSCSCEECSSC----------EECTTTCBCSSSCCBCT-TSCCE-ECSSSEECHHHHHT--CCC
T ss_pred CCCCCCcCCCccccCCCCcceEEECCc----------ccCcccCEeccCCCcCC-CCccE-eECCEEEChhHcCc--ccC
Confidence 4678999999999961 1235666653 57999999999999984 77777 57999999999988 445
Q ss_pred CCC
Q 016954 250 NEC 252 (380)
Q Consensus 250 ~~C 252 (380)
+++
T Consensus 69 p~~ 71 (72)
T 1x4l_A 69 PSS 71 (72)
T ss_dssp SSC
T ss_pred CCC
Confidence 544
No 62
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.01 E-value=2.6e-10 Score=85.97 Aligned_cols=67 Identities=16% Similarity=0.383 Sum_probs=54.8
Q ss_pred cccccccccCCcccCCCCcceEEecccccccccCCCCccCCCCcccccCCcCCCCCceEEccCCcccChhhhhhhccCCC
Q 016954 171 HYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTN 250 (380)
Q Consensus 171 ~f~pkC~~C~~~I~~~~~~~i~~~~~~fw~qkycp~h~H~~CF~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~v~~~~ 250 (380)
++.++|..|+++|.++ .|.+.++ .||..||+|..|+++|. +..|+ ..+|++||..||.+ .+.+
T Consensus 3 ~~~~~C~~C~~~I~~~---~~~a~~~----------~~H~~CF~C~~C~~~L~-~~~~~-~~~~~~yC~~cy~~--~f~~ 65 (69)
T 2cur_A 3 SGSSGCVKCNKAITSG---GITYQDQ----------PWHADCFVCVTCSKKLA-GQRFT-AVEDQYYCVDCYKN--FVSG 65 (69)
T ss_dssp CCCCCCSSSCCCCCTT---CEEETTE----------EECTTTTBCTTTCCBCT-TSCEE-ECSSCEEEHHHHHH--HHTC
T ss_pred CCcCCCcccCCEeCcc---eEEECcc----------ccccCcCEECCCCCCCC-CCccE-eECCEEECHHHhHH--HhcC
Confidence 5678999999999864 4777664 46999999999999994 67787 57999999999998 4567
Q ss_pred CCCc
Q 016954 251 ECQP 254 (380)
Q Consensus 251 ~C~~ 254 (380)
.|.+
T Consensus 66 ~C~g 69 (69)
T 2cur_A 66 PSSG 69 (69)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7753
No 63
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.99 E-value=3.5e-10 Score=85.77 Aligned_cols=70 Identities=17% Similarity=0.433 Sum_probs=56.0
Q ss_pred ccccccccccCCcccCCCCcceEEecccccccccCCCCccCCCCcccccCCcCCCCCceEEccCCcccChhhhhhhccCC
Q 016954 170 EHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDT 249 (380)
Q Consensus 170 ~~f~pkC~~C~~~I~~~~~~~i~~~~~~fw~qkycp~h~H~~CF~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~v~~~ 249 (380)
++|+++|..|++.|.+.+ .++.+.++ .||..||+|..|+++|. +..|+ ..||++||..||.+ .+.
T Consensus 2 ~~~~~~C~~C~~~I~~~~-~~~~a~~~----------~~H~~CF~C~~C~~~L~-~~~~~-~~~~~~yC~~cy~~--~f~ 66 (72)
T 1x4k_A 2 SSGSSGCQECKKTIMPGT-RKMEYKGS----------SWHETCFICHRCQQPIG-TKSFI-PKDNQNFCVPCYEK--QHA 66 (72)
T ss_dssp CSCCCCBSSSCCCCCSSS-CEEEETTE----------EEETTTTCCSSSCCCCC-SSSEE-EETTEEEEHHHHHH--HTS
T ss_pred CccCCCCccCCCcccCCc-eEEEECcC----------eecccCCcccccCCccC-CCccC-ccCCeEECHHHHhH--HhC
Confidence 468899999999999642 35666664 46999999999999985 44777 46999999999998 567
Q ss_pred CCCCc
Q 016954 250 NECQP 254 (380)
Q Consensus 250 ~~C~~ 254 (380)
+.|+.
T Consensus 67 ~~C~~ 71 (72)
T 1x4k_A 67 SGPSS 71 (72)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 77763
No 64
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=98.98 E-value=1.4e-10 Score=98.22 Aligned_cols=61 Identities=21% Similarity=0.398 Sum_probs=54.6
Q ss_pred ccccCCcccccC-ceEeeCCceecCCCcccCCCCCCCC-CceeeccCCccccccccccccccc
Q 016954 115 ICAGCNNEIGHG-RFLNCLDVFWHPECFCCHACHQPIT-DIEFSTSENRPYHKSCYREHYHPK 175 (380)
Q Consensus 115 ~C~~C~~~I~~g-~~v~alg~~wH~~CF~C~~C~~~L~-~~~f~~~dg~~YC~~cy~~~f~pk 175 (380)
+|.+|+++|... .++.++++.||++||+|..|+++|. +..|+..++++||+.||.++|+++
T Consensus 68 ~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~C~~c~~~~~~~~ 130 (131)
T 2xjy_A 68 LCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKIN 130 (131)
T ss_dssp ECTTTCCEECTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGHHHHHHHH
T ss_pred ChhhcCCccCccceeEeeCCceECccCcccCCCCCCCCCCCEEEEECCEEEcHHHHHHHhhcc
Confidence 899999999643 5789999999999999999999994 677999999999999999887653
No 65
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.97 E-value=4e-10 Score=85.45 Aligned_cols=70 Identities=19% Similarity=0.408 Sum_probs=55.2
Q ss_pred ccccccccccCCcccCCCCcceEEecccccccccCCCCccCCCCcccccCCcCCCCCceEEccCCcccChhhhhhhccCC
Q 016954 170 EHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDT 249 (380)
Q Consensus 170 ~~f~pkC~~C~~~I~~~~~~~i~~~~~~fw~qkycp~h~H~~CF~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~v~~~ 249 (380)
+++.++|..|+++|.+.. .++.+.+ ..||..||+|..|+++|. +..|+ ..+|++||..||.+ .+.
T Consensus 2 ~~~~~~C~~C~~~I~~~~-~~~~a~~----------~~~H~~CF~C~~C~~~L~-~~~~~-~~~~~~yC~~cy~~--~f~ 66 (72)
T 1wyh_A 2 SSGSSGCSACGETVMPGS-RKLEYGG----------QTWHEHCFLCSGCEQPLG-SRSFV-PDKGAHYCVPCYEN--KFA 66 (72)
T ss_dssp CCCCCBCSSSCCBCCSSS-CEECSTT----------CCEETTTCBCTTTCCBTT-TSCEE-EETTEEEEHHHHHH--HTS
T ss_pred CccCCCCccCCCccccCc-cEEEECc----------cccCcccCeECCCCCcCC-CCccC-CcCCeEECHHHHHH--Hcc
Confidence 467899999999998632 2455554 357999999999999995 45677 56999999999998 567
Q ss_pred CCCCc
Q 016954 250 NECQP 254 (380)
Q Consensus 250 ~~C~~ 254 (380)
++|+.
T Consensus 67 ~~C~~ 71 (72)
T 1wyh_A 67 SGPSS 71 (72)
T ss_dssp CCCCC
T ss_pred CcCCC
Confidence 78864
No 66
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.91 E-value=1.2e-09 Score=83.84 Aligned_cols=69 Identities=14% Similarity=0.288 Sum_probs=55.3
Q ss_pred ccccccccccCCcccCCCCcceEEecccccccccCCCCccCCCCcccccCCcCCCCCceEEccCCcccCh-hhhhhhccC
Q 016954 170 EHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCL-ECLDSAIMD 248 (380)
Q Consensus 170 ~~f~pkC~~C~~~I~~~~~~~i~~~~~~fw~qkycp~h~H~~CF~C~~C~r~l~~g~~f~~l~dg~~~C~-~C~~~~v~~ 248 (380)
..+.++|..|+++|.+.. .|.+.++ .||+.||+|..|+++|. +..|+ ..||++||. .||.+ .+
T Consensus 6 ~~~~~~C~~C~~~I~~~~--~v~a~~~----------~~H~~CF~C~~C~~~L~-~~~~~-~~~g~~yC~~~cy~~--~f 69 (76)
T 2cu8_A 6 SGMASKCPKCDKTVYFAE--KVSSLGK----------DWHKFCLKCERCSKTLT-PGGHA-EHDGKPFCHKPCYAT--LF 69 (76)
T ss_dssp CCCCCBCTTTCCBCCTTT--EEEETTE----------EEETTTCBCSSSCCBCC-TTSCE-EETTEEECTTTHHHH--HS
T ss_pred CCCCCCCcCCCCEeECCe--EEEECCe----------EeeCCCCCCCCCCCccC-CCceE-eECCEEecchHHHHH--hc
Confidence 456889999999998543 5667664 46999999999999995 56777 469999999 79998 56
Q ss_pred CCCCCc
Q 016954 249 TNECQP 254 (380)
Q Consensus 249 ~~~C~~ 254 (380)
.++|.+
T Consensus 70 ~~kc~g 75 (76)
T 2cu8_A 70 GSGPSS 75 (76)
T ss_dssp CSSCSC
T ss_pred ccccCC
Confidence 777764
No 67
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=98.89 E-value=4.9e-10 Score=94.31 Aligned_cols=75 Identities=13% Similarity=0.214 Sum_probs=58.4
Q ss_pred ccccccc--cccccCCcccCCCCcceEEecccccccccCCCCccCCCCcccccCCcCCCCCceEEccCCcccChhhhhhh
Q 016954 168 YREHYHP--KCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSA 245 (380)
Q Consensus 168 y~~~f~p--kC~~C~~~I~~~~~~~i~~~~~~fw~qkycp~h~H~~CF~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~ 245 (380)
|.++|++ +|..|++.|.+.. .++.+.+ .+||..||+|..|+++|..+..|+ ..+|.+||..||..+
T Consensus 1 Y~r~fg~~~~C~~C~~~I~~~e-~~~~a~~----------~~~H~~CF~C~~C~~~L~~g~~f~-~~~g~~yC~~cy~~~ 68 (123)
T 2l3k_A 1 YLRLFGQDGLCASCDKRIRAYE-MTMRVKD----------KVYHLECFKCAACQKHFSVGDRYL-LINSDIVCEQDIYEW 68 (123)
T ss_dssp CCSSSSSSCCCSSSSCCCCTTC-CCCCCSS----------CCCCTTTCBCTTTCCBCCTTCEEE-ECSSSEEEGGGHHHH
T ss_pred ChhhhCCCCcccCCCCeecCCc-eEEEECC----------cccccccCccccCCCCCCCCCcEE-eeCCEEEcHHHhHHH
Confidence 6778888 9999999998642 2455555 357999999999999997788888 569999999999884
Q ss_pred ccCCCCCCcch
Q 016954 246 IMDTNECQPLY 256 (380)
Q Consensus 246 v~~~~~C~~c~ 256 (380)
..++|..+.
T Consensus 69 --~~~~~~~~~ 77 (123)
T 2l3k_A 69 --TKINGGSGG 77 (123)
T ss_dssp --HHHHTCCCC
T ss_pred --hccccCCCC
Confidence 344555443
No 68
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=98.88 E-value=1.1e-09 Score=84.18 Aligned_cols=68 Identities=16% Similarity=0.258 Sum_probs=55.3
Q ss_pred ccccccCCcccCCCCcceEEecccccccccCCCCccCCCCcccccCCcCCCCCceEEccCCcccCh-hhhhhhccCCCCC
Q 016954 174 PKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCL-ECLDSAIMDTNEC 252 (380)
Q Consensus 174 pkC~~C~~~I~~~~~~~i~~~~~~fw~qkycp~h~H~~CF~C~~C~r~l~~g~~f~~l~dg~~~C~-~C~~~~v~~~~~C 252 (380)
|+|..|+++|.... .|.+.++ .||..||+|..|+++|.. ..|+ ..||++||. .||.+ .+.++|
T Consensus 1 p~C~~C~~~I~~~~--~v~a~~~----------~~H~~CF~C~~C~~~L~~-~~~~-~~~g~~yC~~~cy~~--~f~~~C 64 (76)
T 1iml_A 1 PKCPKCDKEVYFAE--RVTSLGK----------DWHRPCLKCEKCGKTLTS-GGHA-EHEGKPYCNHPCYSA--MFGPKG 64 (76)
T ss_dssp CBCTTTSSBCCGGG--EEEETTE----------EEETTTCBCTTTCCBCCT-TTEE-EETTEEEETTTHHHH--HSSCCC
T ss_pred CcCCCCCCEEECce--EEEECCc----------cccCCCCCccccCccCCC-CceE-CcCCeEeeCHHHHHH--HhCccC
Confidence 68999999998532 5666653 469999999999999954 4677 469999999 69998 578899
Q ss_pred CcchH
Q 016954 253 QPLYL 257 (380)
Q Consensus 253 ~~c~~ 257 (380)
..|..
T Consensus 65 ~~C~~ 69 (76)
T 1iml_A 65 FGRGG 69 (76)
T ss_dssp SSCCC
T ss_pred CCcCC
Confidence 99973
No 69
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.88 E-value=1.9e-09 Score=81.76 Aligned_cols=64 Identities=14% Similarity=0.257 Sum_probs=51.9
Q ss_pred cccccccccCCcccCCCCcceEEecccccccccCCCCccCCCCcccccCCcCCCCCceEEccCCcccChhhhhhhcc
Q 016954 171 HYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIM 247 (380)
Q Consensus 171 ~f~pkC~~C~~~I~~~~~~~i~~~~~~fw~qkycp~h~H~~CF~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~v~ 247 (380)
++.++|..|+++|.+.. ..+.+.++ .||..||+|..|+++| .+..|+ ..+|++||..||.+++.
T Consensus 3 ~~~~~C~~C~~~I~~~~-~~~~a~~~----------~~H~~CF~C~~C~~~L-~~~~~~-~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 3 SGSSGCGGCGEDVVGDG-AGVVALDR----------VFHVGCFVCSTCRAQL-RGQHFY-AVERRAYCEGCYVATLE 66 (72)
T ss_dssp SCCCCCSSSCSCCCSSS-CCEECSSS----------EECTTTCBCSSSCCBC-TTSCEE-ESSSCEEEHHHHHHHHH
T ss_pred CCCCCCccCCCccCCCc-eEEEECCC----------eEcccCCcccccCCcC-CcCcCE-eeCCeEECHHHHHHHHc
Confidence 46889999999998632 25666653 4799999999999999 577787 56999999999998653
No 70
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=98.87 E-value=2.2e-10 Score=101.61 Aligned_cols=111 Identities=14% Similarity=0.196 Sum_probs=79.6
Q ss_pred cccccccCCcccCCCCcceEEecccccccccCCCCccCCCCcccccCCcCCCCCceEEccCCcccChhhhhhhccCCCCC
Q 016954 173 HPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTNEC 252 (380)
Q Consensus 173 ~pkC~~C~~~I~~~~~~~i~~~~~~fw~qkycp~h~H~~CF~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~v~~~~~C 252 (380)
.++|..|+++|.+.. ++.+.++ .||..||+|..|+++|. +..| ..||++||..||.+ .+.+.|
T Consensus 6 ~~~C~~C~~~I~~~~--~~~a~~~----------~wH~~CF~C~~C~~~L~-~~~f--~~~g~~yC~~~y~~--~f~~~C 68 (169)
T 2rgt_A 6 IPMCAGCDQHILDRF--ILKALDR----------HWHSKCLKCSDCHVPLA-ERCF--SRGESVYCKDDFFK--RFGTKC 68 (169)
T ss_dssp -CBBSSSSSBCCSSS--CEECSSC----------EECTTTSBCTTTCCBCC-SCCE--ESSSCEECHHHHHH--HHSCBC
T ss_pred CCccccCCCccCCcE--EEEECCc----------EEccccCccCCCCCcCC-CCCc--ccCCeeeecccccc--cccccc
Confidence 579999999998643 4566653 47999999999999985 4445 36999999999998 467899
Q ss_pred CcchHHHHHHHHHhcccccCcccchhhhHHHHHHHhcCCC-----------CCCCCCcccCCccccccccccee
Q 016954 253 QPLYLDIQEFYESIHMKLEQQIPLLLVERQALNEARDGEK-----------NGYYHMPETRGLCLSEEQTVTTV 315 (380)
Q Consensus 253 ~~c~~~I~~f~e~~~~~i~~~~p~~lv~~~aLn~~~~~e~-----------~g~~~~~e~rGl~~~E~~~~~~~ 315 (380)
..|.+.|. ..--+ ..|+++.|+.+. .|...+...+|..||+.+|...+
T Consensus 69 ~~C~~~I~-----------~~~~v----~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~ 127 (169)
T 2rgt_A 69 AACQLGIP-----------PTQVV----RRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAK 127 (169)
T ss_dssp TTTCCBCC-----------TTSEE----EEETTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHH
T ss_pred cccccccC-----------CCcEE----EEcCCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHHh
Confidence 99996553 11000 136777786542 13333456789999999986554
No 71
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=98.86 E-value=9.8e-10 Score=82.03 Aligned_cols=61 Identities=16% Similarity=0.267 Sum_probs=50.0
Q ss_pred ccccccccccCCcccCCCCcceEEecccccccccCCCCccCCCCcccccCCcCCCCCceEEccCCcccChhhhhhh
Q 016954 170 EHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSA 245 (380)
Q Consensus 170 ~~f~pkC~~C~~~I~~~~~~~i~~~~~~fw~qkycp~h~H~~CF~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~ 245 (380)
+++.++|..|+++|.++ .+.+.++ .||+.||+|..|+++|. +..|+ ..+|++||..||.++
T Consensus 2 ~~~~~~C~~C~~~I~~~---~~~a~~~----------~~H~~CF~C~~C~~~L~-~~~~~-~~~g~~yC~~~y~~~ 62 (66)
T 1nyp_A 2 SMGVPICGACRRPIEGR---VVNAMGK----------QWHVEHFVCAKCEKPFL-GHRHY-ERKGLAYCETHYNQL 62 (66)
T ss_dssp CCCCCEETTTTEECCSC---EECCTTS----------BEETTTCBCTTTCCBCS-SSCCE-EETTEEECHHHHHHH
T ss_pred CcCCCCCcccCCEecce---EEEECcc----------ccccCcCEECCCCCCCC-CCceE-eECCcEECHHHHHHH
Confidence 45789999999999843 4666553 57999999999999984 56777 579999999999874
No 72
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=98.85 E-value=1e-09 Score=85.40 Aligned_cols=69 Identities=14% Similarity=0.233 Sum_probs=49.2
Q ss_pred ccccccccCCcccCCCCcceEEecccccccccCCCCccCCCCcccccCCcCCCCCceEEccCCcccChhhhhhhccCCCC
Q 016954 172 YHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTNE 251 (380)
Q Consensus 172 f~pkC~~C~~~I~~~~~~~i~~~~~~fw~qkycp~h~H~~CF~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~v~~~~~ 251 (380)
..++|..|+++|.+.. .+.+.++ .||+.||+|..|+++|. +..|+ ..+|++||..||.+ .+.++
T Consensus 6 ~~~~C~~C~~~I~~~~--~~~a~~~----------~~H~~CF~C~~C~~~L~-~~~~~-~~~~~~yC~~cy~~--~f~~~ 69 (81)
T 1a7i_A 6 GGNKCGACGRTVYHAE--EVQCDGR----------SFHRCCFLCMVCRKNLD-STTVA-IHDAEVYCKSCYGK--KYGPK 69 (81)
T ss_dssp --CBCSSSCCBCSSTT--EEEETTE----------EEESSSEECSSSCCEEC-SSCCE-EETTEEECSHHHHH--HCC--
T ss_pred CCCcCcCcCccccCce--eEEeCCc----------ccccccCccCCCCCCCC-CCCeE-eeCCEEECHHHHHH--HhCCc
Confidence 4689999999997543 5666654 47999999999999995 44677 46999999999998 57889
Q ss_pred CCcch
Q 016954 252 CQPLY 256 (380)
Q Consensus 252 C~~c~ 256 (380)
|.+|.
T Consensus 70 c~gcg 74 (81)
T 1a7i_A 70 GYGYG 74 (81)
T ss_dssp -----
T ss_pred ccccC
Confidence 99887
No 73
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.85 E-value=1.8e-09 Score=82.89 Aligned_cols=68 Identities=16% Similarity=0.286 Sum_probs=52.5
Q ss_pred cccccccccCCcccCCCCcceEEecccccccccCCCCccCCCCcccccCCcCCCCCceEEccCCcccChhhhhhhccCCC
Q 016954 171 HYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTN 250 (380)
Q Consensus 171 ~f~pkC~~C~~~I~~~~~~~i~~~~~~fw~qkycp~h~H~~CF~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~v~~~~ 250 (380)
.+.++|..|++.|.+.. .++.+.++ .||..||+|..|+++|..+ .|+ ..||++||..||.+ .+.+
T Consensus 9 ~~~~~C~~C~~~I~~~~-~~~~a~~~----------~~H~~CF~C~~C~~~L~~~-~~~-~~~g~~yC~~~y~~--~f~~ 73 (77)
T 1g47_A 9 LASATCERCKGGFAPAE-KIVNSNGE----------LYHEQCFVCAQCFQQFPEG-LFY-EFEGRKYCEHDFQM--LFAP 73 (77)
T ss_dssp CCCCBCSSSCCBCCSTT-TCEEETTE----------EECTTTCCCTTTCCCCGGG-CSE-EETTEEECHHHHHH--HCCC
T ss_pred CCCCCchhcCCccCCCc-eEEEeCcc----------EeccccCeECCCCCCCCCC-CeE-eECCeEeCHHHHHH--Hhhc
Confidence 46789999999998532 34567664 4699999999999999554 577 46999999999998 4667
Q ss_pred CCC
Q 016954 251 ECQ 253 (380)
Q Consensus 251 ~C~ 253 (380)
.|.
T Consensus 74 ~C~ 76 (77)
T 1g47_A 74 CWI 76 (77)
T ss_dssp C--
T ss_pred ccC
Confidence 764
No 74
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=98.84 E-value=1.7e-09 Score=89.86 Aligned_cols=101 Identities=11% Similarity=0.046 Sum_probs=72.5
Q ss_pred cccccccCCcccCCCCcceEEecccccccccCCCCccCCCCcccccCCcCCC-CCceEEccCCcccChhhhhhhccCCCC
Q 016954 173 HPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQ-DTAYVALDDGRKLCLECLDSAIMDTNE 251 (380)
Q Consensus 173 ~pkC~~C~~~I~~~~~~~i~~~~~~fw~qkycp~h~H~~CF~C~~C~r~l~~-g~~f~~l~dg~~~C~~C~~~~v~~~~~ 251 (380)
.++|..|+++|.+.. ++.+.++ .||+.||+|..|+++|.. |..|+ ..||++||..||.+ .+.+.
T Consensus 3 ~~~C~~C~~~I~~~~--~~~a~~~----------~wH~~CF~C~~C~~~L~~~g~~~~-~~~g~~yC~~~y~~--~f~~~ 67 (114)
T 1j2o_A 3 LLTCGGCQQNIGDRY--FLKAIDQ----------YWHEDCLSCDLCGCRLGEVGRRLY-YKLGRKLCRRDYLR--LGGSG 67 (114)
T ss_dssp CBCBSSSCSCBCSSE--EEECSSS----------EECTTTCCCSSSCSCCCCSSSCCC-CBTTBCCCHHHHHH--HHTSC
T ss_pred CCCCcCCCCeeCCcE--EEEECch----------hHHHhcCcccccCCchhcCCCeeE-EECCeeechHHHHH--HhCcc
Confidence 478999999998642 4666653 579999999999999963 56787 57999999999998 56788
Q ss_pred CCcchHHHHHHHHHhcccccCcccchhhhHHHHHHHhcCCCCCCCCCcccCCcccccccccc
Q 016954 252 CQPLYLDIQEFYESIHMKLEQQIPLLLVERQALNEARDGEKNGYYHMPETRGLCLSEEQTVT 313 (380)
Q Consensus 252 C~~c~~~I~~f~e~~~~~i~~~~p~~lv~~~aLn~~~~~e~~g~~~~~e~rGl~~~E~~~~~ 313 (380)
|..|.. +..+. + .........|...+|..||..++..
T Consensus 68 c~~c~~---------~~~~~-----------~-----~~~~~~g~~f~~~~~~~~C~~~~~~ 104 (114)
T 1j2o_A 68 GHMGSG---------GDVMV-----------V-----GEPTLMGGEFGDEDERLITRLENTQ 104 (114)
T ss_dssp CSSCBS---------CSCCC-----------S-----SCSSTTSSBCCCSSSCCCEEEECTT
T ss_pred cCcCCC---------CceeE-----------c-----CCccCCCCeeEEcCCEeecchhhhc
Confidence 888761 11111 0 1111222355688999999888763
No 75
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=98.84 E-value=1.5e-09 Score=81.07 Aligned_cols=61 Identities=18% Similarity=0.402 Sum_probs=49.2
Q ss_pred ccccccccCCcccCCCCcceEEecccccccccCCCCcc--CCCCcccccCCcCCCCCceEEccCCcccC-hhhhhhh
Q 016954 172 YHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEH--DGTPRCCSCERMEPQDTAYVALDDGRKLC-LECLDSA 245 (380)
Q Consensus 172 f~pkC~~C~~~I~~~~~~~i~~~~~~fw~qkycp~h~H--~~CF~C~~C~r~l~~g~~f~~l~dg~~~C-~~C~~~~ 245 (380)
|+++|..|+++|.+.. ..|.+.++ +|| +.||+|..|+++| .+..|+ ..||++|| ..||.++
T Consensus 1 fa~~C~~C~~~I~~~~-~~v~a~~~----------~wH~~~~CF~C~~C~~~L-~~~~f~-~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 1 HAVVCQGCHNAIDPEV-QRVTYNNF----------SWHASTECFLCSCCSKCL-IGQKFM-PVEGMVFCSVECKKRM 64 (65)
T ss_dssp -CEECTTTSSEECTTS-CEEEETTE----------EEETTTTTSBCTTTCCBC-TTSCCE-EETTEEESSHHHHHTT
T ss_pred CcCCCcCCCCeeccCc-eEEEECCC----------ccCCCCCCEECCCCCCcC-CCCceE-EECCEEecCHHHhhhh
Confidence 5789999999999531 35777764 479 9999999999999 577787 46999999 9999763
No 76
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=98.83 E-value=1.9e-09 Score=81.32 Aligned_cols=65 Identities=17% Similarity=0.371 Sum_probs=51.7
Q ss_pred ccccccccccccCCcccCCCCcceEEecccccccccCCCCccCCCCcccccCCcCCCCCceEEccCCcccChhhhhhh
Q 016954 168 YREHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSA 245 (380)
Q Consensus 168 y~~~f~pkC~~C~~~I~~~~~~~i~~~~~~fw~qkycp~h~H~~CF~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~ 245 (380)
|..++.++|..|++.|.+.+ .++.+.++ .||..||+|..|+++|..+ .|+ ..+|++||..||.++
T Consensus 6 y~~~~~~~C~~C~~~i~~~e-~~~~~~~~----------~~H~~CF~C~~C~~~L~~~-~~~-~~~g~~yC~~~y~~l 70 (72)
T 3f6q_B 6 FQGSASATCERCKGGFAPAE-KIVNSNGE----------LYHEQCFVCAQCFQQFPEG-LFY-EFEGRKYCEHDFQML 70 (72)
T ss_dssp CCCCTTCBCTTTCCBCCTTC-EEEEETTE----------EEETTTSSCTTTCCCCGGG-CCE-EETTEEECHHHHHHH
T ss_pred ccCcCCccchhcCccccCCc-eEEEeCcC----------eeCcCCCcccCCCCCCCCC-CeE-eECCeEeCHHHHHHh
Confidence 34578899999999999653 24556653 4799999999999999655 676 469999999999874
No 77
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.80 E-value=3.6e-09 Score=79.87 Aligned_cols=60 Identities=25% Similarity=0.512 Sum_probs=49.4
Q ss_pred ccccccccCCcccCCCCcceEEecccccccccCCCCccCCCCcccccCCcCCCCCceEEccCCcccChhhhhhhc
Q 016954 172 YHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAI 246 (380)
Q Consensus 172 f~pkC~~C~~~I~~~~~~~i~~~~~~fw~qkycp~h~H~~CF~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~v 246 (380)
+.++|..|+++|.++ .|.+.++ .||++||+|..|+++|.. ..|+ ..+|++||..||.++.
T Consensus 4 ~~~~C~~C~~~I~~~---~~~a~~~----------~~H~~CF~C~~C~~~L~~-~~f~-~~~g~~yC~~c~~~~~ 63 (70)
T 2d8x_A 4 GSSGCHQCGEFIIGR---VIKAMNN----------SWHPECFRCDLCQEVLAD-IGFV-KNAGRHLCRPCHNREK 63 (70)
T ss_dssp CSSBCSSSCCBCCSC---CEEETTE----------EECTTTSBCSSSCCBCSS-SCCE-EETTEEECHHHHHHHH
T ss_pred CCCcCccCCCEecce---EEEECcc----------cccccCCEeCCCCCcCCC-CccE-eECCeEECHHHhhhhc
Confidence 568999999999864 4777764 469999999999999954 4676 4799999999999854
No 78
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.79 E-value=4.5e-09 Score=81.92 Aligned_cols=65 Identities=17% Similarity=0.272 Sum_probs=52.3
Q ss_pred cccccccCCcccCCCCcceEEecccccccccCCCCccCCCCcccccCCcCCCCCceEEccCCcccChhhhhhhccCCCCC
Q 016954 173 HPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTNEC 252 (380)
Q Consensus 173 ~pkC~~C~~~I~~~~~~~i~~~~~~fw~qkycp~h~H~~CF~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~v~~~~~C 252 (380)
.++|..|++.|.... .|.+.++ .||+.||+|..|+++|. + .|+ ..||++||..||.+ .+.+.|
T Consensus 15 ~~~C~~C~~~I~~~~--~v~a~~~----------~wH~~CF~C~~C~~~L~-~-~~~-~~~g~~yC~~~y~~--~fg~~C 77 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQ--SLLALDK----------QWHVSCFKCQTCSVILT-G-EYI-SKDGVPYCESDYHA--QFGSGP 77 (80)
T ss_dssp CSCCTTTCCCCSSSC--CEEETTE----------EECTTTCBCSSSCCBCS-S-CCE-EETTEEECTTHHHH--HTTCCS
T ss_pred CCCCcCcCCeeCCCe--EEEECCc----------ccccccCCcCcCCCCcC-C-CeE-EECCEEECHHHHHH--HcCCCC
Confidence 578999999998533 5777664 46999999999999985 4 577 57999999999998 467777
Q ss_pred Cc
Q 016954 253 QP 254 (380)
Q Consensus 253 ~~ 254 (380)
..
T Consensus 78 ~~ 79 (80)
T 2dj7_A 78 SS 79 (80)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 79
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.77 E-value=6.2e-09 Score=80.80 Aligned_cols=66 Identities=20% Similarity=0.359 Sum_probs=51.2
Q ss_pred ccccccccccCCcccCCCCcceEEecccccccccCCCCccCCCCcccccCCcCCCCCceEEccCCcccChhhhhhhccCC
Q 016954 170 EHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDT 249 (380)
Q Consensus 170 ~~f~pkC~~C~~~I~~~~~~~i~~~~~~fw~qkycp~h~H~~CF~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~v~~~ 249 (380)
..+.++|..|++.|.++ .|.+.++ .||+.||+|..|+++|. +..| ..||.+||..||.+ .++
T Consensus 12 ~~~~~~C~~C~~~I~~~---~v~a~~~----------~~H~~CF~C~~C~~~L~-~~~f--~~~g~~yC~~cy~~--~f~ 73 (79)
T 2cor_A 12 GLGKYICQKCHAIIDEQ---PLIFKND----------PYHPDHFNCANCGKELT-ADAR--ELKGELYCLPCHDK--MGV 73 (79)
T ss_dssp CCCCCBCTTTCCBCCSC---CCCCSSS----------CCCTTTSBCSSSCCBCC-TTCE--EETTEEECHHHHHT--TSC
T ss_pred ccCCCCCccCCCEecce---EEEECcc----------eeCCCCCEeCCCCCccC-CCCE--eECCEEeCHHHHHH--hCC
Confidence 34678999999999954 4666653 57999999999999995 4444 46999999999998 455
Q ss_pred CCCC
Q 016954 250 NECQ 253 (380)
Q Consensus 250 ~~C~ 253 (380)
+.+.
T Consensus 74 p~~s 77 (79)
T 2cor_A 74 SGPS 77 (79)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 5543
No 80
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.76 E-value=6.8e-09 Score=82.55 Aligned_cols=69 Identities=14% Similarity=0.199 Sum_probs=54.2
Q ss_pred cccccccccCCcccCCCCcceEEecccccccccCCCCccCCCCcccccCCcCCCCCceEEccCCcccChhhhhhhccCCC
Q 016954 171 HYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTN 250 (380)
Q Consensus 171 ~f~pkC~~C~~~I~~~~~~~i~~~~~~fw~qkycp~h~H~~CF~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~v~~~~ 250 (380)
...++|..|++.|.+.. .|.+.++ .||..||+|..|+++|..+ .|+ ..||++||..||.+ .+.+
T Consensus 13 ~~~~~C~~C~~~I~~~~--~v~a~~~----------~~H~~CF~C~~C~~~L~~~-~~~-~~~g~~yC~~~y~~--~f~~ 76 (91)
T 2d8y_A 13 PARETCVECQKTVYPME--RLLANQQ----------VFHISCFRCSYCNNKLSLG-TYA-SLHGRIYCKPHFNQ--LFKS 76 (91)
T ss_dssp SSSCBCTTTCCBCCTTS--EEECSSS----------EEETTTCBCTTTCCBCCTT-TCC-CSSSCCCCHHHHHH--HSCC
T ss_pred CCCCcCccCCCccCCce--eEEECCC----------EECCCCCeeCCCCCCCCCC-CcE-eECCEEECHHHHHH--HhCC
Confidence 34789999999998643 4655553 5799999999999999544 476 57999999999998 5677
Q ss_pred CCCcc
Q 016954 251 ECQPL 255 (380)
Q Consensus 251 ~C~~c 255 (380)
+|..+
T Consensus 77 kc~~~ 81 (91)
T 2d8y_A 77 KGNYD 81 (91)
T ss_dssp CSCCC
T ss_pred CcCcc
Confidence 87643
No 81
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=98.75 E-value=5.8e-09 Score=88.00 Aligned_cols=63 Identities=19% Similarity=0.224 Sum_probs=51.5
Q ss_pred ccccccccccCCcccCCCCcceEEecccccccccCCCCccCCCCcccccCCcCC-CCCceEEccCCcccChhhhhhh
Q 016954 170 EHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEP-QDTAYVALDDGRKLCLECLDSA 245 (380)
Q Consensus 170 ~~f~pkC~~C~~~I~~~~~~~i~~~~~~fw~qkycp~h~H~~CF~C~~C~r~l~-~g~~f~~l~dg~~~C~~C~~~~ 245 (380)
..+.++|..|+++|.+.. ++.+.++ .||+.||+|..|+++|. .+..|+ ..+|++||..||.++
T Consensus 58 ~~~~~~C~~C~~~I~~~~--~v~a~~~----------~wH~~CF~C~~C~~~L~~~g~~f~-~~dg~~yC~~cy~~~ 121 (123)
T 2l4z_A 58 GLSWKRCAGCGGKIADRF--LLYAMDS----------YWHSRCLKCSSCQAQLGDIGTSSY-TKSGMILCRNDYIRL 121 (123)
T ss_dssp CSSCSBBSSSSSBCCSSS--EEEETTE----------EEETTTSBCTTTCCBGGGTTCCCB-CSSSCCBCHHHHHHH
T ss_pred CccCCcCcCCCCCcCCcE--EEEeCCc----------EEcccccCcCcCCCcccccCCceE-EECCEEeCHHHhhhh
Confidence 446789999999998642 4677664 47999999999999995 367787 579999999999874
No 82
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=98.74 E-value=7.1e-09 Score=82.09 Aligned_cols=65 Identities=18% Similarity=0.342 Sum_probs=50.8
Q ss_pred ccccccccCCcccCCCCcceEEecccccccccCCCCccCCCCcccccCCcCCCCCceEEccCCcccChhhhhhhccCCCC
Q 016954 172 YHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTNE 251 (380)
Q Consensus 172 f~pkC~~C~~~I~~~~~~~i~~~~~~fw~qkycp~h~H~~CF~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~v~~~~~ 251 (380)
..++|..|++.|.+. .|.+.++ .||..||+|..|++.|. +..|+. .||.+||..||.++ +.++
T Consensus 24 ~~~~C~~C~~~I~~~---~~~a~~~----------~~H~~CF~C~~C~~~L~-~~~~~~-~~g~~yC~~~y~~~--f~p~ 86 (89)
T 1x64_A 24 RMPLCDKCGSGIVGA---VVKARDK----------YRHPECFVCADCNLNLK-QKGYFF-VEGELYCETHARAR--TSGP 86 (89)
T ss_dssp SCCBCTTTCCBCCSC---CEESSSC----------EECTTTCCCSSSCCCTT-TSCCEE-ETTEEECHHHHHHH--SSSC
T ss_pred cCCCcccCCCEeccc---EEEECCc----------eECccCCEecCCCCCCC-CCCeEe-ECCEEECHHHHHHH--hCCC
Confidence 367899999999974 4666653 47999999999999994 446774 59999999999984 4555
Q ss_pred CC
Q 016954 252 CQ 253 (380)
Q Consensus 252 C~ 253 (380)
+.
T Consensus 87 ~~ 88 (89)
T 1x64_A 87 SS 88 (89)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 83
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.69 E-value=4.4e-09 Score=81.47 Aligned_cols=59 Identities=19% Similarity=0.395 Sum_probs=48.8
Q ss_pred cccccccCCcccCCCCcceEEecccccccccCCCCccCCCCcccccCCcCCCCCceEEccCCcccChhhhhhhc
Q 016954 173 HPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAI 246 (380)
Q Consensus 173 ~pkC~~C~~~I~~~~~~~i~~~~~~fw~qkycp~h~H~~CF~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~v 246 (380)
.++|..|+++|.++ +|.+.++ .||..||+|..|+++| .+..|+ ..++++||..||.+++
T Consensus 15 ~~~C~~C~~~I~~~---~~~a~~~----------~~H~~CF~C~~C~~~L-~~~~~~-~~~g~~yC~~cy~~~~ 73 (79)
T 1x62_A 15 LPMCDKCGTGIVGV---FVKLRDR----------HRHPECYVCTDCGTNL-KQKGHF-FVEDQIYCEKHARERV 73 (79)
T ss_dssp CCCCSSSCCCCCSS---CEECSSC----------EECTTTTSCSSSCCCH-HHHCCE-ESSSCEECHHHHHHHH
T ss_pred CCccccCCCCccCc---EEEECcc----------eeCcCcCeeCCCCCCC-CCCCeE-eECCEEECHHHHHHHh
Confidence 67999999999974 4766653 4799999999999998 455677 4699999999999853
No 84
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.64 E-value=2.2e-08 Score=78.17 Aligned_cols=61 Identities=23% Similarity=0.363 Sum_probs=47.5
Q ss_pred cccccccCCcccCCCCcceEEecccccccccCCCCccCCCCcccccCCcCCCCCceEE-ccCCcccChhhhhhhc
Q 016954 173 HPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVA-LDDGRKLCLECLDSAI 246 (380)
Q Consensus 173 ~pkC~~C~~~I~~~~~~~i~~~~~~fw~qkycp~h~H~~CF~C~~C~r~l~~g~~f~~-l~dg~~~C~~C~~~~v 246 (380)
.++|..|++.|.... .+.+.++ .||..||+|..|++.|. +..|+. ..||++||..||.++.
T Consensus 15 ~~~C~~C~~~I~~~e--~v~a~~~----------~wH~~CF~C~~C~~~L~-~~~~~~~~~~g~~yC~~~y~~~~ 76 (82)
T 2co8_A 15 GDLCALCGEHLYVLE--RLCVNGH----------FFHRSCFRCHTCEATLW-PGGYEQHPGDGHFYCLQHLPQTD 76 (82)
T ss_dssp SCBCSSSCCBCCTTT--BCCBTTB----------CCBTTTCBCSSSCCBCC-TTSEECCTTTCCCEETTTCCCCC
T ss_pred CCCCcccCCCcccce--EEEECCC----------eeCCCcCEEcCCCCCcC-CCceeEeCcCCEEEChHHHHhhh
Confidence 578999999997543 4555553 57999999999999984 455653 3699999999998743
No 85
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=97.47 E-value=2.8e-05 Score=49.57 Aligned_cols=29 Identities=41% Similarity=0.930 Sum_probs=27.1
Q ss_pred CCccccCCcccccCceEeeCCceecCCCc
Q 016954 113 YRICAGCNNEIGHGRFLNCLDVFWHPECF 141 (380)
Q Consensus 113 ~~~C~~C~~~I~~g~~v~alg~~wH~~CF 141 (380)
.+.|.+|++.|+..+.+.+.|+.||..||
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CCcCCccCCEEecceeEEECCeEecccCC
Confidence 36899999999999999999999999998
No 86
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=93.93 E-value=0.042 Score=42.42 Aligned_cols=46 Identities=46% Similarity=0.562 Sum_probs=32.4
Q ss_pred CCcchHHHHHHHhchhhhhhcCC--Ccc----------CccccccchHHHHHHHHhhc
Q 016954 42 EQENEDIDRAIALSLLEENQKGE--NVI----------DKESQVEEDEQLARAIQESL 87 (380)
Q Consensus 42 ~~~~e~~~~aia~sl~e~~~~~~--~~~----------~~~~~~~edE~lar~lqes~ 87 (380)
+.+.|||.+||+|||.|-..... ..+ ......++|++|..+|..|+
T Consensus 9 ~~eDeDLkrAieLSL~Es~~~~~~~~yvp~~~~~~~~~~~~~~edeD~DLKAAIaASL 66 (81)
T 1q0v_A 9 EDEEELIRKAIELSLKESRNSASSEPIVPVVESKNEVKRQEIEEEEDPDLKAAIQESL 66 (81)
T ss_dssp SSHHHHHHHHHHHHHHCCCCCSCCCCCCCCCCCCCCCCCCCCCCCSCHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHhHHHHcCCCCCCCCCCCCCCCCCCCCCCCCcccCHHHHHHHHHHH
Confidence 56889999999999987543321 101 11234678999999999886
No 87
>2d3g_P Ubiquitin interacting motif from hepatocyte growth factor-regulated tyrosine kinase...; protein-protein complex, UIM and ubiquitin; 1.70A {Bos taurus}
Probab=89.98 E-value=0.15 Score=30.47 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=19.5
Q ss_pred CcchHHHHHHHhchhhhhhcCCC
Q 016954 43 QENEDIDRAIALSLLEENQKGEN 65 (380)
Q Consensus 43 ~~~e~~~~aia~sl~e~~~~~~~ 65 (380)
++.|++.-|||+|++|.+.+.++
T Consensus 2 ~EeEEl~LAlAlS~sEae~~~~~ 24 (26)
T 2d3g_P 2 QEEEELQLALALSQSEAEEKXXX 24 (26)
T ss_pred chHHHHHHHHHHHHHHHHHhccc
Confidence 46789999999999998887664
No 88
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=83.61 E-value=0.27 Score=30.73 Aligned_cols=29 Identities=14% Similarity=0.345 Sum_probs=20.5
Q ss_pred cccccccCCcccCCCCcceEEecccccccccCCCCccCCCC
Q 016954 173 HPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTP 213 (380)
Q Consensus 173 ~pkC~~C~~~I~~~~~~~i~~~~~~fw~qkycp~h~H~~CF 213 (380)
.++|..|++.+-..+ .+.+.++ .||..||
T Consensus 3 ~~~C~~C~k~Vy~~E--k~~~~g~----------~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTE--KVNCLDK----------FWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGG--CCCSSSS----------CCCGGGC
T ss_pred CCcCCccCCEEecce--eEEECCe----------EecccCC
Confidence 468999999997643 3555554 3588887
No 89
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=82.85 E-value=0.4 Score=38.96 Aligned_cols=86 Identities=20% Similarity=0.405 Sum_probs=55.1
Q ss_pred CCccccccccccc--ccccccccCCcccCCCCcceEEecccccccccCCCCccCCCCcccccCCcCCC----CCceEEcc
Q 016954 159 ENRPYHKSCYREH--YHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQ----DTAYVALD 232 (380)
Q Consensus 159 dg~~YC~~cy~~~--f~pkC~~C~~~I~~~~~~~i~~~~~~fw~qkycp~h~H~~CF~C~~C~r~l~~----g~~f~~l~ 232 (380)
=|..||..|..+. ....|..|.+.+.... +.... ..++-..|..|...+.. +..-+.+.
T Consensus 32 CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~---l~~l~------------i~~~~~~C~iC~~~~~~~~~~~~~~~~~~ 96 (133)
T 4ap4_A 32 CGHVFCSQCLRDSLKNANTCPTCRKKINHKR---YHPIY------------IGSGTVSCPICMDGYSEIVQNGRLIVSTE 96 (133)
T ss_dssp TCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC---EEECB------------CSSSSCBCTTTCCBHHHHHHTTCCEEEET
T ss_pred CCChhhHHHHHHHHHhCCCCCCCCCcCcccc---ccccc------------cCCCCCCCCCCCCccccccccCcceEeCC
Confidence 3556777776543 2458999999988654 21111 12344678899765532 22224567
Q ss_pred CCcccChhhhhhhccCCCCCCcchHHH
Q 016954 233 DGRKLCLECLDSAIMDTNECQPLYLDI 259 (380)
Q Consensus 233 dg~~~C~~C~~~~v~~~~~C~~c~~~I 259 (380)
=|..+|..|..+.......|.-|+.+|
T Consensus 97 CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 123 (133)
T 4ap4_A 97 CGHVFCSQCLRDSLKNANTCPTCRKKI 123 (133)
T ss_dssp TSBEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCChhhHHHHHHHHHcCCCCCCCCCcC
Confidence 789999999987666667888887444
No 90
>2klz_A Ataxin-3; UIM, ubiquitin-binding, hydrolase, neurodegenerati nucleus, phosphoprotein, spinocerebellar ataxia, transcript transcription regulation; NMR {Homo sapiens}
Probab=74.45 E-value=1.3 Score=30.73 Aligned_cols=39 Identities=41% Similarity=0.538 Sum_probs=27.8
Q ss_pred CCcchHHHHHHHhchhhhhhcCCCccCccccccchHHHHHHHHhhcCCCC
Q 016954 42 EQENEDIDRAIALSLLEENQKGENVIDKESQVEEDEQLARAIQESLNLES 91 (380)
Q Consensus 42 ~~~~e~~~~aia~sl~e~~~~~~~~~~~~~~~~edE~lar~lqes~~~~s 91 (380)
+.|.||+.+|+|+|--|.+. .++.-.|-|+||-|++..+
T Consensus 4 dEDEedlqrALalSRQE~dm-----------EDeeadLrrAiqLSmQGss 42 (52)
T 2klz_A 4 DEDEEDLQRALALSRQEIDM-----------EDEEADLRRAIQLSMQGSS 42 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-----------SSSHHHHHHHHHHHHTTCC
T ss_pred ccchHHHHHHHHHHHHHhcc-----------chhHHHHHHHHHHHhhccc
Confidence 56778999999998654332 2233478999999987654
No 91
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=74.03 E-value=11 Score=29.91 Aligned_cols=97 Identities=15% Similarity=0.226 Sum_probs=57.6
Q ss_pred CCCccccCCcccccCceEeeC--CceecCCCcccCCCCCCCCCceeeccCCcccccccccccccccccccCCcccCCCCc
Q 016954 112 GYRICAGCNNEIGHGRFLNCL--DVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDVCKHFIPSNHGG 189 (380)
Q Consensus 112 ~~~~C~~C~~~I~~g~~v~al--g~~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~cy~~~f~pkC~~C~~~I~~~~~~ 189 (380)
....|..|+..-.....|... ++.||+.|..=.. .+ ...+.-+|..|. .|.+|++.-.++ .
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~--~~-------~~~~~W~C~~C~------~C~~C~~~~~~~--~ 68 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAV--TP-------LKRAGWQCPECK------VCQNCKQSGEDS--K 68 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCC--CT-------TTSTTCCCTTTC------CCTTTCCCSCCT--T
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCcc--cc-------ccccCccCCcCC------cccccCccCCCC--C
Confidence 456788888753112335544 5889999874321 11 134567788774 688998875432 2
Q ss_pred ceEEecccccccccCCCCccCCCCcccccCCcCCCCCceEEccCCcccChhhhhh
Q 016954 190 LIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDS 244 (380)
Q Consensus 190 ~i~~~~~~fw~qkycp~h~H~~CF~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~ 244 (380)
++.- + .|+..||..|..- ++. .+..+.++|..|...
T Consensus 69 ll~C-d-------~C~~~yH~~Cl~p-----pl~------~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 69 MLVC-D-------TCDKGYHTFCLQP-----VMK------SVPTNGWKCKNCRIC 104 (111)
T ss_dssp EEEC-S-------SSCCEEEGGGSSS-----CCS------SCCSSCCCCHHHHCC
T ss_pred eeEC-C-------CCCcHHhHHhcCC-----ccc------cCCCCCcCCcCCcCc
Confidence 2322 1 4777788776542 121 134678999999654
No 92
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=72.79 E-value=10 Score=30.57 Aligned_cols=86 Identities=14% Similarity=0.238 Sum_probs=49.9
Q ss_pred CceEeeC--CceecCCCcccCCCCCCCCCceeeccCCcccccccccccccccccccCCcccCCCCcceEEeccccccccc
Q 016954 126 GRFLNCL--DVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDVCKHFIPSNHGGLIEYRAHPFWVQKY 203 (380)
Q Consensus 126 g~~v~al--g~~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~cy~~~f~pkC~~C~~~I~~~~~~~i~~~~~~fw~qky 203 (380)
++.|... ++.||+.|..= .+.. .-....+.-+|..| ..|.+|++.-.+.. +..=+ .
T Consensus 21 ~~Li~C~~C~~~~H~~Cl~~-----~~~~-~~~~~~~~W~C~~C------~~C~~C~~~~~~~~---ll~Cd-------~ 78 (114)
T 2kwj_A 21 EELVSCADCGRSGHPTCLQF-----TLNM-TEAVKTYKWQCIEC------KSCILCGTSENDDQ---LLFCD-------D 78 (114)
T ss_dssp CCCEECSSSCCEECTTTTTC-----CHHH-HHHHHHTTCCCGGG------CCCTTTTCCTTTTT---EEECS-------S
T ss_pred CCCeEeCCCCCccchhhCCC-----hhhh-hhccCCCccCcccc------CccCcccccCCCCc---eEEcC-------C
Confidence 3556555 67889988621 1100 00123556678777 26899988654332 32222 4
Q ss_pred CCCCccCCCCcccccCCcCCCCCceEEccCCcccChhhhhh
Q 016954 204 CPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDS 244 (380)
Q Consensus 204 cp~h~H~~CF~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~ 244 (380)
|+..||..|..= ++. .+..|.++|..|...
T Consensus 79 C~~~yH~~Cl~p-----pl~------~~P~g~W~C~~C~~~ 108 (114)
T 2kwj_A 79 CDRGYHMYCLNP-----PVA------EPPEGSWSCHLCWEL 108 (114)
T ss_dssp SCCEEETTTSSS-----CCS------SCCSSCCCCHHHHHH
T ss_pred CCccccccccCC-----Ccc------CCCCCCeECccccch
Confidence 788889877541 221 134788999999664
No 93
>2w15_A Zinc metalloproteinase BAP1; hydrolase inhibitor complex, metal-binding, zinc-depending, metalloprotease, metalloproteinase/inhibitor complex; HET: WR2; 1.05A {Bothrops asper} PDB: 2w12_A* 2w13_A* 2w14_A* 1nd1_A 3gbo_A
Probab=65.69 E-value=4.3 Score=35.88 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=19.4
Q ss_pred EEEEEecCCChhhhhhHHHHHhHHHH
Q 016954 344 TAILILYGLPRLLTGTILAHEMMHGW 369 (380)
Q Consensus 344 ~~il~l~glp~~~~g~ilahe~~ha~ 369 (380)
.+|...++-..+....++|||++|.+
T Consensus 123 ~gi~~~~~~~~~~~a~~~AHElGH~l 148 (202)
T 2w15_A 123 VGVVRDHSKNNLWVAVTMAHELGHNL 148 (202)
T ss_dssp EEEEECCCSSHHHHHHHHHHHHHHHT
T ss_pred ceEEecCCCchhHHHHHHHHHHhhhc
Confidence 35666666555678899999999974
No 94
>1atl_A Atrolysin C; metalloendopeptidase, hydrolase-hydrolase inhibitor complex; HET: 0QI; 1.80A {Crotalus atrox} SCOP: d.92.1.9 PDB: 1htd_A 1dth_A* 3aig_A* 2aig_P* 4aig_A* 1iag_A
Probab=65.08 E-value=4.4 Score=35.82 Aligned_cols=26 Identities=31% Similarity=0.342 Sum_probs=18.5
Q ss_pred EEEEEecCCChhhhhhHHHHHhHHHH
Q 016954 344 TAILILYGLPRLLTGTILAHEMMHGW 369 (380)
Q Consensus 344 ~~il~l~glp~~~~g~ilahe~~ha~ 369 (380)
.+|...++-..+.+..++|||++|.+
T Consensus 123 ~gi~~~~~~~~~~~a~~~AHElGHnl 148 (202)
T 1atl_A 123 IGIVQDHSPINLLMGVTMAHELGHNL 148 (202)
T ss_dssp EEEEECCCSCHHHHHHHHHHHHHHHT
T ss_pred CceEeccCCcceeeEEEehhhhcccc
Confidence 34555555445667889999999974
No 95
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}
Probab=64.60 E-value=3.2 Score=33.14 Aligned_cols=19 Identities=32% Similarity=0.286 Sum_probs=14.9
Q ss_pred CChhhhhhHHHHHhHHHHh
Q 016954 352 LPRLLTGTILAHEMMHGWM 370 (380)
Q Consensus 352 lp~~~~g~ilahe~~ha~l 370 (380)
|...-..+|||||++|.-.
T Consensus 78 l~~~El~aVlaHElgH~~~ 96 (107)
T 3cqb_A 78 MTRDEAEAVLAHEVSHIAN 96 (107)
T ss_dssp SCHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHC
Confidence 4566678999999999743
No 96
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=64.27 E-value=3.8 Score=30.06 Aligned_cols=47 Identities=11% Similarity=0.177 Sum_probs=32.8
Q ss_pred CcccccCCcCCCCCceEEccCCcccChhhhhhhccCCCCCCcchHHH
Q 016954 213 PRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTNECQPLYLDI 259 (380)
Q Consensus 213 F~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~v~~~~~C~~c~~~I 259 (380)
+.|..|-..+........+.=|+.||..|..+.+.....|.-|+.+|
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~ 62 (78)
T 2ect_A 16 LECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 62 (78)
T ss_dssp CCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCC
T ss_pred CCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCcc
Confidence 56788876665555555566788888888887766667788887443
No 97
>1qua_A Acutolysin-C, hemorrhagin III; metalloprotease, hemorrhagic toxin, snake venom proteinase; 2.20A {Deinagkistrodon acutus} SCOP: d.92.1.9
Probab=63.70 E-value=4.9 Score=35.34 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=18.7
Q ss_pred EEEEEecCCChhhhhhHHHHHhHHHH
Q 016954 344 TAILILYGLPRLLTGTILAHEMMHGW 369 (380)
Q Consensus 344 ~~il~l~glp~~~~g~ilahe~~ha~ 369 (380)
.+|...++-..+....++|||++|.+
T Consensus 122 ~gi~~~~~~~~~~~a~~~AHElGH~l 147 (197)
T 1qua_A 122 VGLIQDHSAIPLLMAVTMAHELGHNL 147 (197)
T ss_dssp EEEEECCCSCHHHHHHHHHHHHHHHT
T ss_pred cceEeccCCcchHHHHHHHHHHHHhc
Confidence 35555565445667889999999974
No 98
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=62.69 E-value=6.8 Score=26.45 Aligned_cols=46 Identities=20% Similarity=0.285 Sum_probs=31.6
Q ss_pred CcccccCCcCCCCCceEEcc-CCcccChhhhhhhccCCCCCCcchHH
Q 016954 213 PRCCSCERMEPQDTAYVALD-DGRKLCLECLDSAIMDTNECQPLYLD 258 (380)
Q Consensus 213 F~C~~C~r~l~~g~~f~~l~-dg~~~C~~C~~~~v~~~~~C~~c~~~ 258 (380)
..|..|-..+..++....+. =|+.||..|..+.+.....|.-|+.+
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~ 52 (55)
T 1iym_A 6 VECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLT 52 (55)
T ss_dssp CCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCC
T ss_pred CcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCE
Confidence 46777776665555545454 67888999988776666778777743
No 99
>1kuf_A Atrolysin E, metalloproteinase; alpha/beta protein, hydrolase; 1.35A {Protobothrops mucrosquamatus} SCOP: d.92.1.9 PDB: 1kui_A 1kuk_A 1kug_A 1wni_A
Probab=62.67 E-value=5.2 Score=35.42 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=18.6
Q ss_pred EEEEEecCCChhhhhhHHHHHhHHHH
Q 016954 344 TAILILYGLPRLLTGTILAHEMMHGW 369 (380)
Q Consensus 344 ~~il~l~glp~~~~g~ilahe~~ha~ 369 (380)
.+|...++-.-+.+..++|||++|.+
T Consensus 125 ~gi~~~~~~~~~~~a~~~AHElGH~l 150 (203)
T 1kuf_A 125 VAVVKDHSSKVFMVAVTMTHELGHNL 150 (203)
T ss_dssp EEEEECCCSCHHHHHHHHHHHHHHHT
T ss_pred eeEEecCCCcchhhHHHHHHHhhhhc
Confidence 35555555445678889999999974
No 100
>1bud_A Protein (acutolysin A); metalloproteinase, snake venom, MMP, toxin; 1.90A {Deinagkistrodon acutus} SCOP: d.92.1.9 PDB: 1bsw_A
Probab=62.28 E-value=5.4 Score=35.05 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=18.3
Q ss_pred EEEEEecCCChhhhhhHHHHHhHHHH
Q 016954 344 TAILILYGLPRLLTGTILAHEMMHGW 369 (380)
Q Consensus 344 ~~il~l~glp~~~~g~ilahe~~ha~ 369 (380)
.+|.-.++-.-+.+..++|||++|.+
T Consensus 120 ~gi~~~~~~~~~~~a~~~AHElGH~l 145 (197)
T 1bud_A 120 VGVIQDHSSVNRLVAITLAHEMAHNL 145 (197)
T ss_dssp EEEEECCCSSHHHHHHHHHHHHHHHT
T ss_pred cceEeecCCchhHHHHHHHHHHhhhc
Confidence 34555554445667899999999975
No 101
>1yp1_A FII; FII hydrolase; 1.90A {Deinagkistrodon acutus}
Probab=61.85 E-value=5.5 Score=35.19 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=18.8
Q ss_pred EEEEEecCCChhhhhhHHHHHhHHHH
Q 016954 344 TAILILYGLPRLLTGTILAHEMMHGW 369 (380)
Q Consensus 344 ~~il~l~glp~~~~g~ilahe~~ha~ 369 (380)
.+|...++-..+.+..++|||++|.+
T Consensus 122 ~gi~~~~~~~~~~~a~~~AHElGH~l 147 (202)
T 1yp1_A 122 AGIIQDFSAIPLLMAVVMAHELGHNL 147 (202)
T ss_dssp EEEEECCCSCHHHHHHHHHHHHHHHT
T ss_pred CceEeecCCchhHHHHHHHHHHHHhc
Confidence 45555555445667899999999974
No 102
>3a1q_C Ubiquitin interaction motif-containing protein 1; protein complex, cytoplasm, nucleus, phosphoprotein, UBL conjugation, transcription regulation; 2.20A {Mus musculus}
Probab=59.81 E-value=3.3 Score=27.52 Aligned_cols=40 Identities=35% Similarity=0.449 Sum_probs=27.0
Q ss_pred CcchHHHHHHHhchhhhhhcCCCccCccccccchHHHHHHHHhhcC
Q 016954 43 QENEDIDRAIALSLLEENQKGENVIDKESQVEEDEQLARAIQESLN 88 (380)
Q Consensus 43 ~~~e~~~~aia~sl~e~~~~~~~~~~~~~~~~edE~lar~lqes~~ 88 (380)
.+.|.+.-|+++|--|...-.. .+.++||-|-+++.+|++
T Consensus 5 tEEEq~ALA~rmSeQEA~~vn~------~eE~EdellrKAIaESLn 44 (45)
T 3a1q_C 5 SEEEQFALALKMSEQEAREVNN------QEEKEEELLRKAIAESLN 44 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhHHHHHHhhh------HHHHHHHHHHHHHHHHhc
Confidence 4566776666666554444322 366788899999999875
No 103
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=63.41 E-value=2 Score=35.57 Aligned_cols=24 Identities=38% Similarity=0.411 Sum_probs=18.8
Q ss_pred CCCCCCcchHHHHHHHhchhhhhh
Q 016954 38 DLPLEQENEDIDRAIALSLLEENQ 61 (380)
Q Consensus 38 ~~~~~~~~e~~~~aia~sl~e~~~ 61 (380)
-|.+-.+++||-+|||+||.|-.+
T Consensus 89 idlt~d~KDDLQ~AIALSLqES~~ 112 (129)
T 2lva_A 89 IDLTHDNKDDLQAAIALSLLESPK 112 (129)
Confidence 344444799999999999998766
No 104
>2rr9_C Putative uncharacterized protein UIMC1; Lys63-linked diubiquitin, ubiquitin-interacting motif, ubiqu RAP80, DNA repair, nuclear protein; NMR {Homo sapiens}
Probab=58.70 E-value=4.3 Score=27.12 Aligned_cols=43 Identities=37% Similarity=0.450 Sum_probs=27.1
Q ss_pred cchHHHHHHHhchhhhhhcCCCccCccccccchHHHHHHHHhhcCCCCC
Q 016954 44 ENEDIDRAIALSLLEENQKGENVIDKESQVEEDEQLARAIQESLNLESP 92 (380)
Q Consensus 44 ~~e~~~~aia~sl~e~~~~~~~~~~~~~~~~edE~lar~lqes~~~~sp 92 (380)
+.|.+.-|+++|--|...- ...+.++++-|-+++.+|++.-.|
T Consensus 3 EEEq~ALA~kmSeQEA~~v------n~~eE~E~~llrKAIaESLn~~~~ 45 (46)
T 2rr9_C 3 EEEQFALALKMSEQEAREV------NSQEEEEEELLRKAIAESLNSCRP 45 (46)
T ss_dssp SHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHhHHHHHHh------hhHHHHHHHHHHHHHHHHHHhccC
Confidence 4556655555554333322 224677888899999999876543
No 105
>4dd8_A Disintegrin and metalloproteinase domain-containi 8; batimastat, inflammation, alpha/beta motif, metalloproteinas allergic asthma, tumorigenesis; HET: BAT; 2.10A {Homo sapiens}
Probab=58.35 E-value=6.2 Score=35.04 Aligned_cols=25 Identities=24% Similarity=0.122 Sum_probs=18.2
Q ss_pred EEEEecCCChhhhhhHHHHHhHHHH
Q 016954 345 AILILYGLPRLLTGTILAHEMMHGW 369 (380)
Q Consensus 345 ~il~l~glp~~~~g~ilahe~~ha~ 369 (380)
+|...++..-+.++.++|||++|-.
T Consensus 121 ~v~~d~~~~~~~~a~~~AHElGH~l 145 (208)
T 4dd8_A 121 AVNQDHSKNPVGVACTMAHEMGHNL 145 (208)
T ss_dssp EEEECCCSSHHHHHHHHHHHHHHHT
T ss_pred eEEecCCCChhHHHHHHHHHHHHHc
Confidence 4555556555667889999999964
No 106
>2i47_A ADAM 17; TACE-inhibitor complex, hydrolase; HET: INN KGY; 1.90A {Homo sapiens} SCOP: d.92.1.10 PDB: 3g42_A*
Probab=58.19 E-value=6.3 Score=36.76 Aligned_cols=26 Identities=19% Similarity=0.397 Sum_probs=17.9
Q ss_pred EEEEEe--cC--CChhhhhhHHHHHhHHHH
Q 016954 344 TAILIL--YG--LPRLLTGTILAHEMMHGW 369 (380)
Q Consensus 344 ~~il~l--~g--lp~~~~g~ilahe~~ha~ 369 (380)
++|... || +|...+..++||||+|.+
T Consensus 171 ~g~~~~~~~g~~~~~~~~a~~~AHElGHnl 200 (288)
T 2i47_A 171 SGLTSTKNYGKTILTKEADLVTTHELGHNF 200 (288)
T ss_dssp EEEEESEETTEECCHHHHHHHHHHHHHHHT
T ss_pred cceEEeeccCcccchhhHHHHHHHHHHhhc
Confidence 444433 66 344457899999999975
No 107
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=57.35 E-value=10 Score=29.04 Aligned_cols=21 Identities=38% Similarity=0.496 Sum_probs=17.4
Q ss_pred CCcchHHHHHHHhchhhhhhc
Q 016954 42 EQENEDIDRAIALSLLEENQK 62 (380)
Q Consensus 42 ~~~~e~~~~aia~sl~e~~~~ 62 (380)
+.+++||-+||+.||.|-+..
T Consensus 52 edeD~DLKAAIaASLrd~E~q 72 (81)
T 1q0v_A 52 EEEDPDLKAAIQESLREAEEA 72 (81)
T ss_dssp CCSCHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHH
Confidence 677899999999999876543
No 108
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=57.30 E-value=10 Score=30.25 Aligned_cols=27 Identities=15% Similarity=0.262 Sum_probs=17.3
Q ss_pred CCcccccccccccccccccccCCcccC
Q 016954 159 ENRPYHKSCYREHYHPKCDVCKHFIPS 185 (380)
Q Consensus 159 dg~~YC~~cy~~~f~pkC~~C~~~I~~ 185 (380)
=|..||..|........|..|...+..
T Consensus 41 CgH~fC~~Ci~~~~~~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 41 CEHIFCSNCVSDCIGTGCPVCYTPAWI 67 (117)
T ss_dssp SSCCBCTTTGGGGTTTBCSSSCCBCSC
T ss_pred CCCHHHHHHHHHHhcCCCcCCCCcCcc
Confidence 345567777665555677788777643
No 109
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.69 E-value=7.2 Score=28.16 Aligned_cols=46 Identities=22% Similarity=0.512 Sum_probs=24.9
Q ss_pred cccCCCCCCCCCceeeccCCcccccccccccc--cccccccCCcccCC
Q 016954 141 FCCHACHQPITDIEFSTSENRPYHKSCYREHY--HPKCDVCKHFIPSN 186 (380)
Q Consensus 141 F~C~~C~~~L~~~~f~~~dg~~YC~~cy~~~f--~pkC~~C~~~I~~~ 186 (380)
+.|..|...+........=|..||..|..+.+ ...|..|.+.|...
T Consensus 16 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 16 ILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp GSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred CCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 34444444443322222334566777765432 46788888888754
No 110
>2dw0_A Catrocollastatin; apoptotic toxin, SVMP, metalloproteinase, apoptosis, toxin; HET: NAG BMA MAN GM6; 2.15A {Crotalus atrox} PDB: 2dw1_A* 2dw2_A* 3dsl_A* 3hdb_A*
Probab=53.40 E-value=8.3 Score=38.25 Aligned_cols=26 Identities=38% Similarity=0.496 Sum_probs=19.8
Q ss_pred EEEEEecCCChhhhhhHHHHHhHHHH
Q 016954 344 TAILILYGLPRLLTGTILAHEMMHGW 369 (380)
Q Consensus 344 ~~il~l~glp~~~~g~ilahe~~ha~ 369 (380)
.+|..-+|-..+.+..++||||+|.+
T Consensus 124 ~gi~~d~~~~~~~~a~t~AHElGHnl 149 (419)
T 2dw0_A 124 TGIIQDYSEINLVVAVIMAHEMGHNL 149 (419)
T ss_dssp EEEEECCCSCHHHHHHHHHHHHHHHT
T ss_pred eEEEecCCCcchhhhhhHHHHHHHHc
Confidence 45555666556778899999999975
No 111
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=53.28 E-value=5.3 Score=28.46 Aligned_cols=47 Identities=17% Similarity=0.338 Sum_probs=33.0
Q ss_pred CcccccCCcCCCCCceEEccCCcccChhhhhhhccCCCCCCcchHHH
Q 016954 213 PRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTNECQPLYLDI 259 (380)
Q Consensus 213 F~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~v~~~~~C~~c~~~I 259 (380)
..|..|-..+..+...+.+.=|+.||..|..+.+.....|.-|+.+|
T Consensus 15 ~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~ 61 (69)
T 2kiz_A 15 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 61 (69)
T ss_dssp CSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBS
T ss_pred CCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccc
Confidence 56888876665555555667788899999887655566787777443
No 112
>2ero_A VAP-1, vascular apoptosis-inducing protein 1; metalloprotease, disintegrin, calcium-binding, ADAM, SVMP, M protein, toxin; HET: NAG; 2.50A {Crotalus atrox} PDB: 2erp_A* 2erq_A*
Probab=52.86 E-value=7.9 Score=38.47 Aligned_cols=26 Identities=27% Similarity=0.227 Sum_probs=19.0
Q ss_pred EEEEEecCCChhhhhhHHHHHhHHHH
Q 016954 344 TAILILYGLPRLLTGTILAHEMMHGW 369 (380)
Q Consensus 344 ~~il~l~glp~~~~g~ilahe~~ha~ 369 (380)
.+|...++--.+.+..++||||+|.+
T Consensus 133 ~gi~~d~~~~~~~~a~t~AHElGHnl 158 (427)
T 2ero_A 133 AGIVQDHSKIHHLVAIAMAHEMGHNL 158 (427)
T ss_dssp EEEEECCBSSHHHHHHHHHHHHHHHT
T ss_pred EEEEecCCCchhHHHHHHHHHHHHhc
Confidence 35555555445778899999999975
No 113
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=52.00 E-value=1 Score=33.43 Aligned_cols=51 Identities=14% Similarity=0.151 Sum_probs=31.9
Q ss_pred CcccccCCcCCCCCceEEccCCcccChhhhhhhccCCCCCCcchHHHHHHHHHhcccccCcccchhhhHHHHHHHhcCC
Q 016954 213 PRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTNECQPLYLDIQEFYESIHMKLEQQIPLLLVERQALNEARDGE 291 (380)
Q Consensus 213 F~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~v~~~~~C~~c~~~I~~f~e~~~~~i~~~~p~~lv~~~aLn~~~~~e 291 (380)
..|-.|+.+|. |. ...|.++|..|-.. -||.+.+|++|++-..--..|+.+
T Consensus 11 L~CP~ck~~L~----~~-~~~g~LvC~~c~~~-----------------------YPI~dGIPvmL~~Ear~~~~~~~~ 61 (67)
T 2jny_A 11 LACPKDKGPLR----YL-ESEQLLVNERLNLA-----------------------YRIDDGIPVLLIDEATEWTPNNLE 61 (67)
T ss_dssp CBCTTTCCBCE----EE-TTTTEEEETTTTEE-----------------------EEEETTEECCCSSCCEECCCCCCC
T ss_pred hCCCCCCCcCe----Ee-CCCCEEEcCCCCcc-----------------------ccCCCCEeeeChhHhcCCchhhhh
Confidence 46777876552 22 34678888877432 578899999988743333344444
No 114
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.97 E-value=7.7 Score=27.80 Aligned_cols=27 Identities=22% Similarity=0.465 Sum_probs=17.1
Q ss_pred Ccccccccccccc-----cccccccCCcccCC
Q 016954 160 NRPYHKSCYREHY-----HPKCDVCKHFIPSN 186 (380)
Q Consensus 160 g~~YC~~cy~~~f-----~pkC~~C~~~I~~~ 186 (380)
|..||..|..+.+ ...|..|.+.|..+
T Consensus 39 gH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 39 GHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred CChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 4456777765443 34788888887654
No 115
>3dwb_A ECE-1, endothelin-converting enzyme 1; protein, disease mutation, glycoprotein, hirschsprung diseas hydrolase, membrane, metal-binding; HET: 5HD RDF; 2.38A {Homo sapiens} SCOP: d.92.1.0
Probab=51.83 E-value=4.6 Score=42.49 Aligned_cols=15 Identities=27% Similarity=0.576 Sum_probs=13.0
Q ss_pred hhhhHHHHHhHHHHh
Q 016954 356 LTGTILAHEMMHGWM 370 (380)
Q Consensus 356 ~~g~ilahe~~ha~l 370 (380)
..|+|+||||+|++=
T Consensus 500 ~iG~vigHEi~H~FD 514 (670)
T 3dwb_A 500 GIGVVVGHELTHAFD 514 (670)
T ss_dssp THHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhhccC
Confidence 468899999999974
No 116
>2e3x_A Coagulation factor X-activating enzyme light CHAI; disintegrin, metalloproteinase, C-type lectin, hydrolase, BL clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia russellii siamensis}
Probab=51.48 E-value=8.7 Score=38.21 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=19.4
Q ss_pred EEEEEecCCChhhhhhHHHHHhHHHH
Q 016954 344 TAILILYGLPRLLTGTILAHEMMHGW 369 (380)
Q Consensus 344 ~~il~l~glp~~~~g~ilahe~~ha~ 369 (380)
.+|..-+|--.+.+..++||||+|.+
T Consensus 126 ~gi~~d~~~~~~~~a~t~AHElGHnl 151 (427)
T 2e3x_A 126 VGIVQEQGNRNFKTAVIMAHELSHNL 151 (427)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred eEEEEeCCCccceeeeehHHHHHHhh
Confidence 45555566555777899999999975
No 117
>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca}
Probab=50.95 E-value=4.8 Score=37.04 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=18.9
Q ss_pred EEEEecCCChhh-----hhhHHHHHhHHHHh
Q 016954 345 AILILYGLPRLL-----TGTILAHEMMHGWM 370 (380)
Q Consensus 345 ~il~l~glp~~~-----~g~ilahe~~ha~l 370 (380)
.|+|-.||=..+ ..+|||||++|.-.
T Consensus 83 ~I~v~~gLl~~l~~~~ELaaVLaHElgH~~~ 113 (253)
T 3c37_A 83 RVYVHTGLLKAADNETELAGVLAHEINHAVA 113 (253)
T ss_dssp EEEEEHHHHHHCSSHHHHHHHHHHHHHHHHT
T ss_pred eEEeeHHHHhhCCCHHHHHHHHHHHHHHHHC
Confidence 466666765544 56899999999743
No 118
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.82 E-value=5.5 Score=28.80 Aligned_cols=47 Identities=11% Similarity=0.107 Sum_probs=32.9
Q ss_pred CcccccCCcCCCCCceEEccCCcccChhhhhhhccCCCCCCcchHHH
Q 016954 213 PRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTNECQPLYLDI 259 (380)
Q Consensus 213 F~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~v~~~~~C~~c~~~I 259 (380)
..|..|-..+..+.....+.=|+.||..|..+.+.....|.-|+.+|
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~ 62 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPV 62 (74)
T ss_dssp CBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccc
Confidence 46788876665555555556788899999887665566787777444
No 119
>2ddf_A ADAM 17; hydrolase; HET: INN CIT; 1.70A {Homo sapiens} PDB: 2fv5_A* 3l0v_A* 3kme_A* 3l0t_A* 3kmc_A* 3le9_A* 3lea_A* 3lgp_A* 3o64_A* 3ewj_A* 3edz_A* 3e8r_A* 2fv9_A* 1zxc_A* 2oi0_A* 3b92_A* 2a8h_A* 1bkc_A* 3cki_A 1bkc_I* ...
Probab=50.30 E-value=6.9 Score=35.76 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=14.9
Q ss_pred cCC--ChhhhhhHHHHHhHHHH
Q 016954 350 YGL--PRLLTGTILAHEMMHGW 369 (380)
Q Consensus 350 ~gl--p~~~~g~ilahe~~ha~ 369 (380)
||- |...+..++|||++|-+
T Consensus 173 ~g~~~~~~~~a~~~AHElGHnl 194 (257)
T 2ddf_A 173 YGKTILTKEADLVTTHELGHNF 194 (257)
T ss_dssp TTEECCHHHHHHHHHHHHHHHT
T ss_pred cCcccccceeeeeeeeehhhhc
Confidence 663 33447889999999975
No 120
>2jsd_A Matrix metalloproteinase-20; MMP-NNGH, structural genomics, structural proteomics in europe, spine, spine-2, spine2-complexes, hydrolase; HET: NGH; NMR {Homo sapiens}
Probab=48.94 E-value=6.1 Score=33.43 Aligned_cols=12 Identities=42% Similarity=0.404 Sum_probs=10.3
Q ss_pred hhhHHHHHhHHH
Q 016954 357 TGTILAHEMMHG 368 (380)
Q Consensus 357 ~g~ilahe~~ha 368 (380)
.-.|++||++||
T Consensus 108 ~~~v~~HEiGHa 119 (160)
T 2jsd_A 108 LFTVAAHEFGHA 119 (160)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHhHhh
Confidence 347999999998
No 121
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=48.78 E-value=7.9 Score=26.05 Aligned_cols=46 Identities=15% Similarity=0.189 Sum_probs=29.3
Q ss_pred CcccccCCcCCC-CCceEEccCCcccChhhhhhhccCCCCCCcchHH
Q 016954 213 PRCCSCERMEPQ-DTAYVALDDGRKLCLECLDSAIMDTNECQPLYLD 258 (380)
Q Consensus 213 F~C~~C~r~l~~-g~~f~~l~dg~~~C~~C~~~~v~~~~~C~~c~~~ 258 (380)
+.|..|-..+.. +...+.+.=|+.+|..|..+.+.....|.-|+.+
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~ 52 (55)
T 2ecm_A 6 SGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGP 52 (55)
T ss_dssp CSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCS
T ss_pred CcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCc
Confidence 467777765532 2334556678888888888765555667666643
No 122
>1r1h_A Neprilysin; enkephalinase, glycoprotein, metalloprotease, hydrolase; HET: NAG BIR; 1.95A {Homo sapiens} SCOP: d.92.1.4 PDB: 1dmt_A* 1r1i_A* 1r1j_A* 1y8j_A* 2qpj_A* 2yb9_A*
Probab=48.20 E-value=6.1 Score=41.67 Aligned_cols=15 Identities=33% Similarity=0.713 Sum_probs=13.1
Q ss_pred hhhhHHHHHhHHHHh
Q 016954 356 LTGTILAHEMMHGWM 370 (380)
Q Consensus 356 ~~g~ilahe~~ha~l 370 (380)
..|+|+|||++||+-
T Consensus 523 ~iG~vigHEi~H~FD 537 (696)
T 1r1h_A 523 GIGMVIGHEITHGFD 537 (696)
T ss_dssp THHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHHHhh
Confidence 479999999999973
No 123
>3zuk_A Endopeptidase, peptidase family M13; hydrolase-inhibitor complex, pathogenicity, phagosome matura; HET: RDF 211 PGE PG4; 2.60A {Mycobacterium tuberculosis}
Probab=47.10 E-value=6.1 Score=41.96 Aligned_cols=15 Identities=33% Similarity=0.676 Sum_probs=13.1
Q ss_pred hhhhHHHHHhHHHHh
Q 016954 356 LTGTILAHEMMHGWM 370 (380)
Q Consensus 356 ~~g~ilahe~~ha~l 370 (380)
..|+|+|||++|++=
T Consensus 522 ~iG~vIgHEi~HgFD 536 (699)
T 3zuk_A 522 GIGAVIGHEIGHGFD 536 (699)
T ss_dssp THHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhh
Confidence 468999999999984
No 124
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=46.89 E-value=21 Score=24.45 Aligned_cols=26 Identities=15% Similarity=0.398 Sum_probs=15.8
Q ss_pred CcccccccccccccccccccCCcccCC
Q 016954 160 NRPYHKSCYREHYHPKCDVCKHFIPSN 186 (380)
Q Consensus 160 g~~YC~~cy~~~f~pkC~~C~~~I~~~ 186 (380)
|..||..|..+ ....|..|.+.+...
T Consensus 25 gH~fC~~Ci~~-~~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 25 LHTLCSGCLEA-SGMQCPICQAPWPLG 50 (56)
T ss_dssp SCCSBTTTCSS-SSSSCSSCCSSSSCC
T ss_pred CCcccHHHHcc-CCCCCCcCCcEeecC
Confidence 34456666544 355788888877643
No 125
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=46.05 E-value=13 Score=26.95 Aligned_cols=47 Identities=19% Similarity=0.363 Sum_probs=30.9
Q ss_pred CCcccCCCCCCCCCceeeccCCcccccccccccc---cccccccCCcccCC
Q 016954 139 ECFCCHACHQPITDIEFSTSENRPYHKSCYREHY---HPKCDVCKHFIPSN 186 (380)
Q Consensus 139 ~CF~C~~C~~~L~~~~f~~~dg~~YC~~cy~~~f---~pkC~~C~~~I~~~ 186 (380)
+-|.|..|...+.+. ....-|..||..|..+.+ ...|..|++.+...
T Consensus 7 ~~~~C~IC~~~~~~P-v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 7 EYFRCPISLELMKDP-VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSCTTTSCCCSSE-EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred ccCCCCCccccccCC-EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 456777777776653 333577888888865543 34688888777643
No 126
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.71 E-value=7.1 Score=27.62 Aligned_cols=28 Identities=25% Similarity=0.600 Sum_probs=18.4
Q ss_pred CCcccccccccccc---cccccccCCcccCC
Q 016954 159 ENRPYHKSCYREHY---HPKCDVCKHFIPSN 186 (380)
Q Consensus 159 dg~~YC~~cy~~~f---~pkC~~C~~~I~~~ 186 (380)
=|..||..|..+.+ ...|..|...|..+
T Consensus 33 CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 33 CGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 34567777766543 35788888887654
No 127
>1r55_A ADAM 33; metalloprotease, inhibitor, asthma, hydrolase; HET: NAG MAN 097; 1.58A {Homo sapiens} SCOP: d.92.1.9 PDB: 1r54_A*
Probab=45.49 E-value=14 Score=32.76 Aligned_cols=15 Identities=27% Similarity=0.423 Sum_probs=12.6
Q ss_pred hhhhhHHHHHhHHHH
Q 016954 355 LLTGTILAHEMMHGW 369 (380)
Q Consensus 355 ~~~g~ilahe~~ha~ 369 (380)
+.+..++|||++|.+
T Consensus 134 ~~~a~~~AHElGHnl 148 (214)
T 1r55_A 134 IGAAATMAHEIGHSL 148 (214)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhc
Confidence 456899999999975
No 128
>2rjp_A Adamts-4; metalloprotease domain, aggrecanase, cleavage on PAIR of basic residues, extracellular matrix, glycoprotein, hydrolase, metal-binding; HET: 886; 2.80A {Homo sapiens} PDB: 3b2z_A
Probab=44.99 E-value=12 Score=35.46 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=15.9
Q ss_pred EEEEecCCChhhhhhHHHHHhHHHH
Q 016954 345 AILILYGLPRLLTGTILAHEMMHGW 369 (380)
Q Consensus 345 ~il~l~glp~~~~g~ilahe~~ha~ 369 (380)
+|..-+| +.+..++||||+|-+
T Consensus 134 gv~~d~~---~~~a~t~AHElGHnl 155 (316)
T 2rjp_A 134 AIVEDDG---LQSAFTAAHQLGHVF 155 (316)
T ss_dssp EEEECSS---TTHHHHHHHHHHHHT
T ss_pred ceEecCC---chHHHHHHHHHHhhc
Confidence 4444444 577889999999964
No 129
>2ovx_A Matrix metalloproteinase-9 (EC 3.4.24.35) (MMP-9) type IV collagenase) (92 kDa gelatinase)...; S1-prime pocket, hydrolase-hydrola inhibitor complex; HET: 4MR; 2.00A {Homo sapiens} SCOP: d.92.1.11 PDB: 2ovz_A* 2ow0_A* 2ow1_A* 2ow2_A* 1gkd_A* 1gkc_A*
Probab=43.79 E-value=8.2 Score=32.85 Aligned_cols=10 Identities=30% Similarity=0.511 Sum_probs=9.4
Q ss_pred hHHHHHhHHH
Q 016954 359 TILAHEMMHG 368 (380)
Q Consensus 359 ~ilahe~~ha 368 (380)
.|++||++||
T Consensus 113 ~va~HEiGHa 122 (159)
T 2ovx_A 113 LVAAHQFGHA 122 (159)
T ss_dssp HHHHHHHHHH
T ss_pred hhhhhhhhhh
Confidence 6999999998
No 130
>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii}
Probab=43.66 E-value=9.8 Score=34.48 Aligned_cols=20 Identities=25% Similarity=0.504 Sum_probs=15.3
Q ss_pred hhhhHHHHHhHHHHhhhc-CC
Q 016954 356 LTGTILAHEMMHGWMRLQ-GA 375 (380)
Q Consensus 356 ~~g~ilahe~~ha~l~l~-g~ 375 (380)
+..+|+.||++|+|.-.. |.
T Consensus 47 l~~~v~~HElgH~~~A~~~G~ 67 (224)
T 3b4r_A 47 LFVSVVLHELGHSYVAKKYGV 67 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHcCC
Confidence 567889999999997433 44
No 131
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=43.64 E-value=8.9 Score=29.22 Aligned_cols=46 Identities=11% Similarity=0.095 Sum_probs=32.8
Q ss_pred CcccccCCcCCCCCceEEccCCcccChhhhhhhccCCCCCCcchHH
Q 016954 213 PRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTNECQPLYLD 258 (380)
Q Consensus 213 F~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~v~~~~~C~~c~~~ 258 (380)
..|..|-..+..+.....+.=|+.||..|..+.+.....|.-|+.+
T Consensus 41 ~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~ 86 (91)
T 2l0b_A 41 MCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCM 86 (91)
T ss_dssp SEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCB
T ss_pred CCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCcc
Confidence 4688887666555555556778888899988766666778777743
No 132
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.23 E-value=9.1 Score=28.41 Aligned_cols=47 Identities=17% Similarity=0.327 Sum_probs=32.7
Q ss_pred CcccccCCcCCCCCc-eEEccCCcccChhhhhhhccCC---CCCCcchHHH
Q 016954 213 PRCCSCERMEPQDTA-YVALDDGRKLCLECLDSAIMDT---NECQPLYLDI 259 (380)
Q Consensus 213 F~C~~C~r~l~~g~~-f~~l~dg~~~C~~C~~~~v~~~---~~C~~c~~~I 259 (380)
+.|..|...+..+.. .+.+.=|+.+|..|....+... ..|.-|+.++
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 66 (88)
T 2ct2_A 16 LECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKIT 66 (88)
T ss_dssp CBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCB
T ss_pred CCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcc
Confidence 678888876644332 4456789999999998765543 6788787443
No 133
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=41.94 E-value=12 Score=27.32 Aligned_cols=45 Identities=9% Similarity=0.110 Sum_probs=33.7
Q ss_pred CCcccccCCcCCCCCceEEccCCcccChhhhhhhccC-CCCCCcchHHH
Q 016954 212 TPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMD-TNECQPLYLDI 259 (380)
Q Consensus 212 CF~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~v~~-~~~C~~c~~~I 259 (380)
-|.|..|...+. +.. .+.-|+.||..|....+.. ...|.-|+.++
T Consensus 8 ~~~C~IC~~~~~--~Pv-~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~ 53 (78)
T 1t1h_A 8 YFRCPISLELMK--DPV-IVSTGQTYERSSIQKWLDAGHKTCPKSQETL 53 (78)
T ss_dssp SSSCTTTSCCCS--SEE-EETTTEEEEHHHHHHHHTTTCCBCTTTCCBC
T ss_pred cCCCCCcccccc--CCE-EcCCCCeecHHHHHHHHHHCcCCCCCCcCCC
Confidence 478999987663 343 3679999999999887664 56788888554
No 134
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.77 E-value=13 Score=26.44 Aligned_cols=43 Identities=21% Similarity=0.527 Sum_probs=32.6
Q ss_pred CcccccCCcCCCCCceEEccCCcccChhhhhhhccCCCCCCcchHHH
Q 016954 213 PRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTNECQPLYLDI 259 (380)
Q Consensus 213 F~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~v~~~~~C~~c~~~I 259 (380)
+.|..|-..+.. +.+.=|+.+|..|..+.+.....|.-|+.+|
T Consensus 16 ~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 58 (70)
T 2ecn_A 16 EECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQM 58 (70)
T ss_dssp CCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCT
T ss_pred CCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcc
Confidence 678888765532 4567889999999998776777888888554
No 135
>3b8z_A Protein adamts-5; alpha/beta, hydrolase; HET: 294; 1.40A {Homo sapiens} PDB: 3hyg_A* 3hy9_A* 3hy7_A* 3ljt_A*
Probab=41.47 E-value=14 Score=32.84 Aligned_cols=15 Identities=33% Similarity=0.315 Sum_probs=12.3
Q ss_pred hhhhhHHHHHhHHHH
Q 016954 355 LLTGTILAHEMMHGW 369 (380)
Q Consensus 355 ~~~g~ilahe~~ha~ 369 (380)
+....++|||++|.+
T Consensus 139 ~~~a~~~AHElGHnl 153 (217)
T 3b8z_A 139 LHAAFTVAHEIGHLL 153 (217)
T ss_dssp SSHHHHHHHHHHHHT
T ss_pred cchhhhhHhhhhhhc
Confidence 356789999999964
No 136
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=40.61 E-value=77 Score=25.27 Aligned_cols=51 Identities=20% Similarity=0.399 Sum_probs=33.2
Q ss_pred CCCccccCCcccccCceEeeC----CceecCCCcccCCCCCCCCCceeeccCCcccccccccccccccccccCCcc
Q 016954 112 GYRICAGCNNEIGHGRFLNCL----DVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREHYHPKCDVCKHFI 183 (380)
Q Consensus 112 ~~~~C~~C~~~I~~g~~v~al----g~~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~cy~~~f~pkC~~C~~~I 183 (380)
....|..|+. .|+.|... .+.||..|.. |.. .-.|.-||..| .|..|++..
T Consensus 14 ~~~~C~~C~~---~G~ll~CD~~~Cp~~fH~~Cl~-------L~~----~P~g~W~Cp~c-------~C~~C~k~~ 68 (107)
T 4gne_A 14 HEDYCFQCGD---GGELVMCDKKDCPKAYHLLCLN-------LTQ----PPYGKWECPWH-------QCDECSSAA 68 (107)
T ss_dssp SCSSCTTTCC---CSEEEECCSTTCCCEECTGGGT-------CSS----CCSSCCCCGGG-------BCTTTCSBC
T ss_pred CCCCCCcCCC---CCcEeEECCCCCCcccccccCc-------CCc----CCCCCEECCCC-------CCCcCCCCC
Confidence 3456888883 36777665 3678988763 332 12567788877 588888764
No 137
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=40.42 E-value=13 Score=30.53 Aligned_cols=44 Identities=25% Similarity=0.449 Sum_probs=33.5
Q ss_pred CcccccCCcCCCCCceEEccCCcccChhhhhhhccCCCCCCcchHHH
Q 016954 213 PRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTNECQPLYLDI 259 (380)
Q Consensus 213 F~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~v~~~~~C~~c~~~I 259 (380)
+.|..|-..+. .. +.+.=|+.||..|..........|.-|+.+|
T Consensus 54 ~~C~iC~~~~~--~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 97 (138)
T 4ayc_A 54 LQCIICSEYFI--EA-VTLNCAHSFCSYCINEWMKRKIECPICRKDI 97 (138)
T ss_dssp SBCTTTCSBCS--SE-EEETTSCEEEHHHHHHHTTTCSBCTTTCCBC
T ss_pred CCCcccCcccC--Cc-eECCCCCCccHHHHHHHHHcCCcCCCCCCcC
Confidence 56888886652 23 4467899999999988777778899998555
No 138
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.28 E-value=8.5 Score=27.94 Aligned_cols=48 Identities=15% Similarity=0.227 Sum_probs=32.5
Q ss_pred CCCcccccCCcCCCCCceEEccCCcccChhhhhhhccCCCCCCcchHH
Q 016954 211 GTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTNECQPLYLD 258 (380)
Q Consensus 211 ~CF~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~v~~~~~C~~c~~~ 258 (380)
.-..|..|-..+..+.....+.=|+.||..|..+.+.....|.-|+.+
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~ 69 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRAD 69 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCc
Confidence 345688887666555555556677888888887765556667777643
No 139
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.25 E-value=11 Score=27.00 Aligned_cols=46 Identities=22% Similarity=0.411 Sum_probs=34.1
Q ss_pred CCcccccCCcCCCCCceEEccCCcccChhhhhhhccCCCCCCcchHHHH
Q 016954 212 TPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTNECQPLYLDIQ 260 (380)
Q Consensus 212 CF~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~v~~~~~C~~c~~~I~ 260 (380)
-+.|..|...+. .. +.+.=|+.||..|....+.....|.-|+.+|.
T Consensus 15 ~~~C~IC~~~~~--~~-~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 15 VPECAICLQTCV--HP-VSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp CCBCSSSSSBCS--SE-EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCCCccCCcccC--CC-EEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 367888886552 22 34578999999999987777788988886653
No 140
>2rjq_A Adamts-5; metalloprotease domain, aggrecanase, cleavage on PAIR of BAS residues, extracellular matrix, glycoprotein, hydrolase, ME binding; HET: NAG BAT; 2.60A {Homo sapiens}
Probab=40.24 E-value=15 Score=35.59 Aligned_cols=22 Identities=32% Similarity=0.297 Sum_probs=15.6
Q ss_pred EEEEecCCChhhhhhHHHHHhHHHH
Q 016954 345 AILILYGLPRLLTGTILAHEMMHGW 369 (380)
Q Consensus 345 ~il~l~glp~~~~g~ilahe~~ha~ 369 (380)
+|.--+| +.+..++||||+|.+
T Consensus 134 gv~~d~~---~~~a~~~AHElGHnl 155 (378)
T 2rjq_A 134 AVIEDDG---LHAAFTVAHEIGHLL 155 (378)
T ss_dssp EEEECCS---TTHHHHHHHHHHHHT
T ss_pred ceEcccC---cchhhhhhhhhhhhc
Confidence 3433345 467899999999974
No 141
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.74 E-value=17 Score=26.39 Aligned_cols=27 Identities=15% Similarity=0.529 Sum_probs=16.8
Q ss_pred Ccccccccccccc--------cccccccCCcccCC
Q 016954 160 NRPYHKSCYREHY--------HPKCDVCKHFIPSN 186 (380)
Q Consensus 160 g~~YC~~cy~~~f--------~pkC~~C~~~I~~~ 186 (380)
|..||..|..+.+ ...|..|...+..+
T Consensus 38 gH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 38 GHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp SCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred CCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 4456666665432 45788888877653
No 142
>1cge_A Fibroblast collagenase; hydrolase (metalloprotease); 1.90A {Homo sapiens} SCOP: d.92.1.11 PDB: 2j0t_A 1ayk_A 1hfc_A* 2ayk_A 2tcl_A* 3ayk_A* 4ayk_A* 1cgl_A* 1cgf_A 966c_A* 3shi_A
Probab=39.41 E-value=10 Score=32.44 Aligned_cols=11 Identities=36% Similarity=0.546 Sum_probs=9.9
Q ss_pred hhHHHHHhHHH
Q 016954 358 GTILAHEMMHG 368 (380)
Q Consensus 358 g~ilahe~~ha 368 (380)
-.|++||++||
T Consensus 112 ~~v~~HEiGHa 122 (168)
T 1cge_A 112 HRVAAHELGHS 122 (168)
T ss_dssp HHHHHHHHHHH
T ss_pred hhhhhhHhHhh
Confidence 47899999998
No 143
>2xs4_A Karilysin protease; hydrolase, bacterial MMP, virulence factor, metalloprotease, dependent, peptidase; 1.70A {Tannerella forsythia} PDB: 2xs3_A
Probab=39.27 E-value=11 Score=32.26 Aligned_cols=10 Identities=50% Similarity=0.567 Sum_probs=9.5
Q ss_pred hHHHHHhHHH
Q 016954 359 TILAHEMMHG 368 (380)
Q Consensus 359 ~ilahe~~ha 368 (380)
.|++||++||
T Consensus 117 ~v~~HEiGHa 126 (167)
T 2xs4_A 117 TVAAHEIGHL 126 (167)
T ss_dssp HHHHHHHHHH
T ss_pred hhHHHHHHHh
Confidence 7999999998
No 144
>3dte_A IRRE protein; radiotolerance, gene regulation, metallopeptidase; 2.60A {Deinococcus deserti} PDB: 3dti_A 3dtk_A
Probab=39.02 E-value=21 Score=33.92 Aligned_cols=28 Identities=29% Similarity=0.198 Sum_probs=22.7
Q ss_pred EEEEecCCChhhhhhHHHHHhHHHHhhh
Q 016954 345 AILILYGLPRLLTGTILAHEMMHGWMRL 372 (380)
Q Consensus 345 ~il~l~glp~~~~g~ilahe~~ha~l~l 372 (380)
.|+|=..++....--.||||++|.+|--
T Consensus 84 ~I~LN~~~~~~rqrFTLAHELGHllLh~ 111 (301)
T 3dte_A 84 VILINSQVRPERQRFTLAHEISHALLLG 111 (301)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCChhhHHHHHHHHHHHHHhcc
Confidence 4666667888888889999999999854
No 145
>2v4b_A Adamts-1; zymogen, protease, hydrolase, metalloprotease, heparin-binding, metalloproteinase, metzincin, glycoprotein metal-binding; 2.00A {Homo sapiens} PDB: 2jih_A 3q2g_A* 3q2h_A*
Probab=38.82 E-value=17 Score=34.04 Aligned_cols=15 Identities=33% Similarity=0.379 Sum_probs=12.6
Q ss_pred hhhhhHHHHHhHHHH
Q 016954 355 LLTGTILAHEMMHGW 369 (380)
Q Consensus 355 ~~~g~ilahe~~ha~ 369 (380)
+.+..++||||+|.+
T Consensus 141 ~~~a~t~AHElGHnl 155 (300)
T 2v4b_A 141 LQAAFTTAHELGHVF 155 (300)
T ss_dssp TTHHHHHHHHHHHHT
T ss_pred ccceehhhhhhhhhc
Confidence 457899999999975
No 146
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=38.63 E-value=9.7 Score=27.06 Aligned_cols=29 Identities=14% Similarity=0.340 Sum_probs=21.9
Q ss_pred ccCCCCCCCCCceeeccCCcccc-cccccc
Q 016954 142 CCHACHQPITDIEFSTSENRPYH-KSCYRE 170 (380)
Q Consensus 142 ~C~~C~~~L~~~~f~~~dg~~YC-~~cy~~ 170 (380)
.|..|+..++...-+.+||+.|| +.|...
T Consensus 9 aC~~C~c~Vs~~eai~~dGK~YCSe~Ca~g 38 (55)
T 1jjd_A 9 ACEPCLCNVDPSKAIDRNGLYYCSEACADG 38 (55)
T ss_dssp SSTTCCCCBCTTTSEESSSCEESSHHHHHT
T ss_pred cCCCCeeEechHHhhhcCCeEEehHHHHcc
Confidence 46778888877677778999998 677553
No 147
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=38.40 E-value=13 Score=28.56 Aligned_cols=26 Identities=19% Similarity=0.547 Sum_probs=14.4
Q ss_pred Ccccccccccccc--cccccccCCcccC
Q 016954 160 NRPYHKSCYREHY--HPKCDVCKHFIPS 185 (380)
Q Consensus 160 g~~YC~~cy~~~f--~pkC~~C~~~I~~ 185 (380)
|..||..|..+.+ ...|..|...+..
T Consensus 42 gH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 42 SHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp CCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 4456666654322 3466777666653
No 148
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=38.39 E-value=2.6 Score=31.29 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=27.3
Q ss_pred CcccccCCcCCCCCceEEccCCcccChhhhhhhccCCCCCCcchHHHHHHHHHhcccccCcccchhhh
Q 016954 213 PRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTNECQPLYLDIQEFYESIHMKLEQQIPLLLVE 280 (380)
Q Consensus 213 F~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~v~~~~~C~~c~~~I~~f~e~~~~~i~~~~p~~lv~ 280 (380)
..|-.|+..|. + ....|.++|..|-.. -||.+.||++|++
T Consensus 9 L~CP~ck~~L~----~-~~~~~~LiC~~cg~~-----------------------YPI~dGIPvmL~~ 48 (68)
T 2jr6_A 9 LVCPVTKGRLE----Y-HQDKQELWSRQAKLA-----------------------YPIKDGIPYMLEN 48 (68)
T ss_dssp CBCSSSCCBCE----E-ETTTTEEEETTTTEE-----------------------EEEETTEECCCTT
T ss_pred eECCCCCCcCe----E-eCCCCEEEcCCCCcE-----------------------ecCCCCeeeeChh
Confidence 56778876552 2 234677888777432 5788899999886
No 149
>1hy7_A Stromelysin-1, MMP-3; mixed alpha beta structure, zinc protease, inhibited, hydrol; HET: MBS; 1.50A {Homo sapiens} SCOP: d.92.1.11 PDB: 1biw_A* 1bm6_A* 1bqo_A* 1b3d_A* 1cqr_A 1d5j_A* 1d7x_A* 1d8f_A* 1d8m_A* 1g05_A* 1g49_A* 1c3i_A* 1sln_A* 1uea_A 2srt_A* 1ums_A* 1umt_A* 2d1o_A* 3oho_A* 1ciz_A* ...
Probab=38.19 E-value=11 Score=32.37 Aligned_cols=11 Identities=36% Similarity=0.389 Sum_probs=9.8
Q ss_pred hhHHHHHhHHH
Q 016954 358 GTILAHEMMHG 368 (380)
Q Consensus 358 g~ilahe~~ha 368 (380)
-.|++||++||
T Consensus 114 ~~v~~HEiGHa 124 (173)
T 1hy7_A 114 FLVAAHEIGHS 124 (173)
T ss_dssp HHHHHHHHHHH
T ss_pred hhhHHHHHHHh
Confidence 47899999998
No 150
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis}
Probab=37.92 E-value=8.1 Score=41.99 Aligned_cols=13 Identities=31% Similarity=0.951 Sum_probs=11.6
Q ss_pred hhHHHHHhHHHHh
Q 016954 358 GTILAHEMMHGWM 370 (380)
Q Consensus 358 g~ilahe~~ha~l 370 (380)
..|+|||++|.|.
T Consensus 288 ~~vIaHElAHqWf 300 (867)
T 2gtq_A 288 ESVVGHEYFHNWT 300 (867)
T ss_dssp HHHHHHHHHTTTB
T ss_pred HHHHHHHHHHHhc
Confidence 4899999999994
No 151
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.80 E-value=13 Score=28.47 Aligned_cols=14 Identities=14% Similarity=0.344 Sum_probs=10.2
Q ss_pred CCCCcccccCCcCC
Q 016954 210 DGTPRCCSCERMEP 223 (380)
Q Consensus 210 ~~CF~C~~C~r~l~ 223 (380)
..-|.|..|++.+.
T Consensus 78 ~~~~~C~~C~k~f~ 91 (115)
T 2dmi_A 78 QKVLKCMYCGHSFE 91 (115)
T ss_dssp CSSCBCSSSCCBCS
T ss_pred CcceECCCCCCccC
Confidence 34578999998764
No 152
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.42 E-value=16 Score=27.24 Aligned_cols=17 Identities=24% Similarity=0.755 Sum_probs=13.3
Q ss_pred CCCCCCccccCCccccc
Q 016954 109 FPEGYRICAGCNNEIGH 125 (380)
Q Consensus 109 ~~~~~~~C~~C~~~I~~ 125 (380)
+......|+-|...|..
T Consensus 11 y~~~i~~C~IC~~~i~~ 27 (74)
T 2ct0_A 11 YPDAVKICNICHSLLIQ 27 (74)
T ss_dssp CSSSSCBCSSSCCBCSS
T ss_pred ccCCCCcCcchhhHccc
Confidence 45577889999999853
No 153
>3k7n_A K-like; SVMP, hydrolase; HET: NAG FUC FUL; 2.30A {Naja atra}
Probab=37.24 E-value=21 Score=35.06 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=16.3
Q ss_pred EEEEecCCChhhhhhHHHHHhHHHH
Q 016954 345 AILILYGLPRLLTGTILAHEMMHGW 369 (380)
Q Consensus 345 ~il~l~glp~~~~g~ilahe~~ha~ 369 (380)
+|.-.++--.+.+..|+||||+|-+
T Consensus 127 gv~~d~~~~~~~~a~t~AHElGHnl 151 (397)
T 3k7n_A 127 AIVQDYNRRISLVASTITHELGHNL 151 (397)
T ss_dssp EEEECCCSCHHHHHHHHHHHHHHHT
T ss_pred EEEeecCCccchhhhhHHHHHHHHc
Confidence 4433343233567788999999964
No 154
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A*
Probab=37.19 E-value=7.6 Score=41.60 Aligned_cols=14 Identities=36% Similarity=1.023 Sum_probs=12.0
Q ss_pred hhhHHHHHhHHHHh
Q 016954 357 TGTILAHEMMHGWM 370 (380)
Q Consensus 357 ~g~ilahe~~ha~l 370 (380)
...++|||++|.|.
T Consensus 259 ~~~viaHElaHqWf 272 (780)
T 1z5h_A 259 SANVIAHEIAHQWF 272 (780)
T ss_dssp HHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHh
Confidence 34899999999995
No 155
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=36.78 E-value=16 Score=28.47 Aligned_cols=45 Identities=13% Similarity=0.280 Sum_probs=33.7
Q ss_pred CcccccCCcCCCCCceEEccCCcccChhhhhhhccCCCCCCcchHHH
Q 016954 213 PRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTNECQPLYLDI 259 (380)
Q Consensus 213 F~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~v~~~~~C~~c~~~I 259 (380)
+.|..|...+. +......=|+.||..|....+.....|.-|+.++
T Consensus 16 ~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 60 (108)
T 2ckl_A 16 LMCVLCGGYFI--DATTIIECLHSFCKTCIVRYLETSKYCPICDVQV 60 (108)
T ss_dssp TBCTTTSSBCS--SEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBS
T ss_pred CCCccCChHHh--CcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccc
Confidence 67889987662 3444337899999999998777777888888554
No 156
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=36.74 E-value=14 Score=29.42 Aligned_cols=43 Identities=16% Similarity=0.302 Sum_probs=28.2
Q ss_pred cCCCCCCCCCceeeccCCcccccccccc---cccccccccCCcccC
Q 016954 143 CHACHQPITDIEFSTSENRPYHKSCYRE---HYHPKCDVCKHFIPS 185 (380)
Q Consensus 143 C~~C~~~L~~~~f~~~dg~~YC~~cy~~---~f~pkC~~C~~~I~~ 185 (380)
|..|+.|+.-..-..-=+..+|-+|+.. .-...|..|..+|..
T Consensus 4 C~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 4 CDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp CTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred cCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 5666666655443333344788888864 335689999999974
No 157
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=36.65 E-value=21 Score=25.77 Aligned_cols=26 Identities=23% Similarity=0.483 Sum_probs=15.4
Q ss_pred Cccccccccccccc----ccccccCCcccC
Q 016954 160 NRPYHKSCYREHYH----PKCDVCKHFIPS 185 (380)
Q Consensus 160 g~~YC~~cy~~~f~----pkC~~C~~~I~~ 185 (380)
|..||..|..+.+. ..|..|.+.+..
T Consensus 35 gH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 35 GNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 45566666554332 468888776543
No 158
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=36.49 E-value=14 Score=28.23 Aligned_cols=45 Identities=16% Similarity=0.355 Sum_probs=33.4
Q ss_pred CcccccCCcCCCCCceEEccCCcccChhhhhhhccCCCCCCcchHHH
Q 016954 213 PRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTNECQPLYLDI 259 (380)
Q Consensus 213 F~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~v~~~~~C~~c~~~I 259 (380)
+.|..|...+. +......=|+.||..|....+.....|.-|+.++
T Consensus 23 ~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 67 (99)
T 2y43_A 23 LRCGICFEYFN--IAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTV 67 (99)
T ss_dssp TBCTTTCSBCS--SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCcccCChhhC--CcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcC
Confidence 67888987653 3333236899999999998877777898888554
No 159
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=36.45 E-value=19 Score=27.60 Aligned_cols=58 Identities=14% Similarity=0.181 Sum_probs=32.4
Q ss_pred cccccccCCcccCCCCcceEEecccccccccCCCCccCCCCcccccCCcCCCCCceEEccCCcccChhhhhhh
Q 016954 173 HPKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSA 245 (380)
Q Consensus 173 ~pkC~~C~~~I~~~~~~~i~~~~~~fw~qkycp~h~H~~CF~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~ 245 (380)
...|.+|+..-..+.+ .|.+=+ .|+..||..|.. -++ ...-+.+.+|.++|..|....
T Consensus 16 ~~~C~vC~~~~~~~~~-~ll~CD-------~C~~~yH~~Cl~-----Ppl--~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 16 GLACVVCRQMTVASGN-QLVECQ-------ECHNLYHQDCHK-----PQV--TDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp CCSCSSSCCCCCCTTC-CEEECS-------SSCCEEETTTSS-----SCC--CHHHHHCTTCCCCCHHHHHHH
T ss_pred CCcCCCCCCCCCCCCC-ceEECC-------CCCCeEcCccCC-----Ccc--cccccCCCCCCeeCccccchh
Confidence 4468888876432211 233322 377788887754 112 110011357899999998753
No 160
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=36.22 E-value=15 Score=33.57 Aligned_cols=54 Identities=22% Similarity=0.631 Sum_probs=31.7
Q ss_pred CCCCCCccccCCcccccCceEeeCCceecCCCcccCCCCCCCCCceeeccCCccccccccccc-ccccccccCCcccCC
Q 016954 109 FPEGYRICAGCNNEIGHGRFLNCLDVFWHPECFCCHACHQPITDIEFSTSENRPYHKSCYREH-YHPKCDVCKHFIPSN 186 (380)
Q Consensus 109 ~~~~~~~C~~C~~~I~~g~~v~alg~~wH~~CF~C~~C~~~L~~~~f~~~dg~~YC~~cy~~~-f~pkC~~C~~~I~~~ 186 (380)
+......|..|+..|..| .+|..|+..+- .+|-.-|.+. -.++|..|+..++.+
T Consensus 176 ~~~~i~~C~iC~~iv~~g--------------~~C~~C~~~~H----------~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 176 YPDAVKICNICHSLLIQG--------------QSCETCGIRMH----------LPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CTTTCCBCTTTCSBCSSC--------------EECSSSCCEEC----------HHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred cCCCCCcCcchhhHHhCC--------------cccCccChHHH----------HHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 344678999999998533 45555543221 1232222222 246899999988765
No 161
>3edh_A Bone morphogenetic protein 1; vicinal disulfide, alternative splicing, calcium, chondrogenesis, cleavage on PAIR of basic residues, cytokine; 1.25A {Homo sapiens} SCOP: d.92.1.0 PDB: 3edg_A 3edi_A
Probab=36.12 E-value=13 Score=33.20 Aligned_cols=11 Identities=36% Similarity=0.419 Sum_probs=9.4
Q ss_pred hHHHHHhHHHH
Q 016954 359 TILAHEMMHGW 369 (380)
Q Consensus 359 ~ilahe~~ha~ 369 (380)
.++.||+|||=
T Consensus 89 g~i~HEl~Hal 99 (201)
T 3edh_A 89 GIVVHELGHVV 99 (201)
T ss_dssp HHHHHHHHHHH
T ss_pred chhHHHHHHHh
Confidence 58899999983
No 162
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=35.66 E-value=12 Score=27.56 Aligned_cols=40 Identities=15% Similarity=0.304 Sum_probs=27.0
Q ss_pred CcccccCCcCCCCCceEEccCCcccChhhhhhhccCCCCCCcchHHHHHHHHHhcccccCcccchhhh
Q 016954 213 PRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTNECQPLYLDIQEFYESIHMKLEQQIPLLLVE 280 (380)
Q Consensus 213 F~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~v~~~~~C~~c~~~I~~f~e~~~~~i~~~~p~~lv~ 280 (380)
..|-.|+..|. + ...+|.++|..|-.. -||.+.||++|++
T Consensus 9 L~CP~ck~~L~----~-~~~~~~LiC~~cg~~-----------------------YPI~dGIPvmL~~ 48 (68)
T 2hf1_A 9 LVCPLCKGPLV----F-DKSKDELICKGDRLA-----------------------FPIKDGIPMMLES 48 (68)
T ss_dssp CBCTTTCCBCE----E-ETTTTEEEETTTTEE-----------------------EEEETTEECCCGG
T ss_pred eECCCCCCcCe----E-eCCCCEEEcCCCCcE-----------------------ecCCCCeeeeChh
Confidence 45777775552 2 234677888777432 5788899999887
No 163
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding, metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A {Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A* 3q44_A* 3t8v_A*
Probab=35.42 E-value=9.4 Score=41.68 Aligned_cols=14 Identities=29% Similarity=0.534 Sum_probs=11.9
Q ss_pred hhhHHHHHhHHHHh
Q 016954 357 TGTILAHEMMHGWM 370 (380)
Q Consensus 357 ~g~ilahe~~ha~l 370 (380)
...|+|||++|.|.
T Consensus 295 i~~vIAHElAHQWF 308 (889)
T 3ebh_A 295 ILTVVGHEYFHQYT 308 (889)
T ss_dssp HHHHHHHHHHTTTB
T ss_pred HHHHHHHHHHHHHh
Confidence 35799999999995
No 164
>3k7l_A Atragin; SVMP, metalloprotease, hydrolase; HET: NAG; 2.50A {Naja atra}
Probab=35.35 E-value=22 Score=35.29 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=16.2
Q ss_pred EEEEecCCChhhhhhHHHHHhHHHH
Q 016954 345 AILILYGLPRLLTGTILAHEMMHGW 369 (380)
Q Consensus 345 ~il~l~glp~~~~g~ilahe~~ha~ 369 (380)
+|.-.++--.+.+..|+||||+|-+
T Consensus 132 gv~~d~~~~~~~~a~t~AHElGHnl 156 (422)
T 3k7l_A 132 AVVQDYSSRTRMVAITMAHEMGHNL 156 (422)
T ss_dssp EEEECCCSCHHHHHHHHHHHHHHHT
T ss_pred eEEeecCCcchhhhHHHHHHHHHHc
Confidence 3433343233567788999999964
No 165
>3lqb_A Hatching enzyme, LOC792177 protein; hydrolase, metalloprotease, astacin, metal- protease; 1.10A {Danio rerio}
Probab=35.22 E-value=13 Score=33.08 Aligned_cols=11 Identities=36% Similarity=0.564 Sum_probs=9.6
Q ss_pred hhHHHHHhHHH
Q 016954 358 GTILAHEMMHG 368 (380)
Q Consensus 358 g~ilahe~~ha 368 (380)
-.++.||+|||
T Consensus 94 ~g~i~HEl~Ha 104 (199)
T 3lqb_A 94 SGIAQHELNHA 104 (199)
T ss_dssp HHHHHHHHHHH
T ss_pred cchHHHHHHHH
Confidence 46889999999
No 166
>3u9w_A Leukotriene A-4 hydrolase; hydrolase-hydrolase inhibitor complex; HET: 28P; 1.25A {Homo sapiens} PDB: 3cho_A* 3chp_A* 3chq_A* 3chr_A* 3chs_A* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A* 3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A* 3ftz_A* 3fu0_A* 3fu3_A* ...
Probab=34.97 E-value=11 Score=39.13 Aligned_cols=12 Identities=42% Similarity=1.096 Sum_probs=10.8
Q ss_pred hHHHHHhHHHHh
Q 016954 359 TILAHEMMHGWM 370 (380)
Q Consensus 359 ~ilahe~~ha~l 370 (380)
.|+|||++|.|.
T Consensus 289 ~viaHElAHqWf 300 (608)
T 3u9w_A 289 NVIAHEISHSWT 300 (608)
T ss_dssp HHHHHHHHTTTB
T ss_pred HHHHHHhhhhhh
Confidence 589999999995
No 167
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.68 E-value=64 Score=24.04 Aligned_cols=47 Identities=17% Similarity=0.202 Sum_probs=26.7
Q ss_pred cccccCCcccCCCCcceEEecccccccccCCCCccCCCCcccccCCcCCCCCceEEccCC-cccChhhh
Q 016954 175 KCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDG-RKLCLECL 242 (380)
Q Consensus 175 kC~~C~~~I~~~~~~~i~~~~~~fw~qkycp~h~H~~CF~C~~C~r~l~~g~~f~~l~dg-~~~C~~C~ 242 (380)
.|.+|++.-.++. +| .=+ .|+..||..|.. -++. . +..| ..+|..|.
T Consensus 28 ~C~vC~~~~~~~~--ll-~CD-------~C~~~yH~~Cl~-----Ppl~--~----~P~g~~W~C~~C~ 75 (77)
T 2e6s_A 28 SCRVCGGKHEPNM--QL-LCD-------ECNVAYHIYCLN-----PPLD--K----VPEEEYWYCPSCK 75 (77)
T ss_dssp SCSSSCCCCCSTT--EE-ECS-------SSCCEEETTSSS-----SCCS--S----CCCSSCCCCTTTC
T ss_pred CCcCcCCcCCCCC--EE-EcC-------CCCccccccccC-----CCcc--C----CCCCCCcCCcCcc
Confidence 4677876543322 33 222 478888887753 1221 1 2366 88998884
No 168
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=34.18 E-value=8.4 Score=42.00 Aligned_cols=13 Identities=46% Similarity=1.025 Sum_probs=11.3
Q ss_pred hhHHHHHhHHHHh
Q 016954 358 GTILAHEMMHGWM 370 (380)
Q Consensus 358 g~ilahe~~ha~l 370 (380)
..|+|||++|.|.
T Consensus 317 ~~viaHElAHqWF 329 (909)
T 4fke_A 317 VTVIAHELAHQWF 329 (909)
T ss_dssp HHHHHHHHHTTTB
T ss_pred HHHHHHHHHhhhh
Confidence 4689999999995
No 169
>1hv5_A Stromelysin 3; inhibition, phosphinic inhibitor, hydrolase; HET: CPS RXP; 2.60A {Mus musculus} SCOP: d.92.1.11
Probab=34.14 E-value=14 Score=31.43 Aligned_cols=11 Identities=36% Similarity=0.314 Sum_probs=10.0
Q ss_pred hhHHHHHhHHH
Q 016954 358 GTILAHEMMHG 368 (380)
Q Consensus 358 g~ilahe~~ha 368 (380)
-.|++||++||
T Consensus 114 ~~v~~HEiGHa 124 (165)
T 1hv5_A 114 LQVAAHEFGHV 124 (165)
T ss_dssp HHHHHHHHHHH
T ss_pred hhhHHHHhHhh
Confidence 57999999998
No 170
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.63 E-value=9.1 Score=26.90 Aligned_cols=47 Identities=21% Similarity=0.446 Sum_probs=31.9
Q ss_pred CCcccccCCcCCC----CCceEEccCCcccChhhhhhhccCCCCCCcchHH
Q 016954 212 TPRCCSCERMEPQ----DTAYVALDDGRKLCLECLDSAIMDTNECQPLYLD 258 (380)
Q Consensus 212 CF~C~~C~r~l~~----g~~f~~l~dg~~~C~~C~~~~v~~~~~C~~c~~~ 258 (380)
-+.|..|-..+.. +...+.+.=|+.||..|..+.+.....|.-|+.+
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~ 65 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKK 65 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCC
T ss_pred CCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCc
Confidence 3678888765422 2333556788999999998876666677777743
No 171
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=33.30 E-value=7.6 Score=34.71 Aligned_cols=13 Identities=23% Similarity=0.327 Sum_probs=9.3
Q ss_pred cCCcccccccccc
Q 016954 158 SENRPYHKSCYRE 170 (380)
Q Consensus 158 ~dg~~YC~~cy~~ 170 (380)
.+|+++|..|+.+
T Consensus 190 ~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 190 LNGKPVCKPDYYG 202 (204)
T ss_dssp ETTEEECHHHHHC
T ss_pred eCCcEEChhhhcc
Confidence 4677888888754
No 172
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=33.25 E-value=8.8 Score=34.29 Aligned_cols=30 Identities=20% Similarity=0.390 Sum_probs=21.5
Q ss_pred CcccccCCcCCCCCceEEccCCcccChhhhhh
Q 016954 213 PRCCSCERMEPQDTAYVALDDGRKLCLECLDS 244 (380)
Q Consensus 213 F~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~ 244 (380)
.+|..|+....... ..+.||+.+|..|+..
T Consensus 173 ~~C~~CGE~~~~~~--~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 173 VRCDVCGEYTYEAD--AKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EECTTTCCEEEGGG--CEEETTEEECHHHHHC
T ss_pred eECCCCCCchhhcc--eeeeCCcEEChhhhcc
Confidence 46999996653322 2245899999999875
No 173
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=33.16 E-value=26 Score=27.34 Aligned_cols=48 Identities=15% Similarity=0.126 Sum_probs=30.8
Q ss_pred CCCcccCCCCCCCCCceeeccCCcccccccccccc--cccccccCCcccCC
Q 016954 138 PECFCCHACHQPITDIEFSTSENRPYHKSCYREHY--HPKCDVCKHFIPSN 186 (380)
Q Consensus 138 ~~CF~C~~C~~~L~~~~f~~~dg~~YC~~cy~~~f--~pkC~~C~~~I~~~ 186 (380)
+.-|.|..|...+.+.-. ...|..||..|-.+.+ ...|..|++++...
T Consensus 27 p~~~~CpI~~~~m~dPV~-~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVR-LPSGTIMDRSIILRHLLNSPTDPFNRQTLTES 76 (100)
T ss_dssp STTTBCTTTCSBCSSEEE-ETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred cHhhCCcCccCcccCCeE-CCCCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence 556788888777766333 3478888888744321 45677777776643
No 174
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=33.06 E-value=13 Score=27.64 Aligned_cols=40 Identities=13% Similarity=0.296 Sum_probs=27.6
Q ss_pred CcccccCCcCCCCCceEEccCCcccChhhhhhhccCCCCCCcchHHHHHHHHHhcccccCcccchhhh
Q 016954 213 PRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTNECQPLYLDIQEFYESIHMKLEQQIPLLLVE 280 (380)
Q Consensus 213 F~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~v~~~~~C~~c~~~I~~f~e~~~~~i~~~~p~~lv~ 280 (380)
..|-.|+..|. + ...+|.++|..|-.. -||.+.||++|++
T Consensus 9 L~CP~ck~~L~----~-~~~~~~LiC~~cg~~-----------------------YPI~dGIPvmL~~ 48 (70)
T 2js4_A 9 LVCPVCKGRLE----F-QRAQAELVCNADRLA-----------------------FPVRDGVPIMLEA 48 (70)
T ss_dssp CBCTTTCCBEE----E-ETTTTEEEETTTTEE-----------------------EEEETTEECCCGG
T ss_pred eECCCCCCcCE----E-eCCCCEEEcCCCCce-----------------------ecCCCCeeeeChh
Confidence 56778886552 2 234677888877432 5788999999887
No 175
>1i76_A MMP-8;, neutrophil collagenase; hydrolase, complex (metalloprotease/inhibitor); HET: BSI; 1.20A {Homo sapiens} SCOP: d.92.1.11 PDB: 1i73_A* 1jao_A* 1jap_A 1jaq_A* 1jj9_A* 1mmb_A* 1zp5_A* 1zs0_A* 1zvx_A* 3dng_A* 3dpe_A* 3dpf_A* 1kbc_A* 1jan_A* 1bzs_A* 1mnc_A* 2oy2_A 1a86_A* 1jh1_A* 1a85_A ...
Probab=33.03 E-value=15 Score=31.24 Aligned_cols=11 Identities=36% Similarity=0.362 Sum_probs=10.0
Q ss_pred hhHHHHHhHHH
Q 016954 358 GTILAHEMMHG 368 (380)
Q Consensus 358 g~ilahe~~ha 368 (380)
..|++||++||
T Consensus 113 ~~v~~HE~GHa 123 (163)
T 1i76_A 113 FLVAAHEFGHS 123 (163)
T ss_dssp HHHHHHHHHHH
T ss_pred hhhhHHHhhhh
Confidence 57999999998
No 176
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=33.02 E-value=22 Score=28.01 Aligned_cols=11 Identities=27% Similarity=0.440 Sum_probs=5.8
Q ss_pred CcccccCCcCC
Q 016954 213 PRCCSCERMEP 223 (380)
Q Consensus 213 F~C~~C~r~l~ 223 (380)
+.|..|...+.
T Consensus 51 ~~CP~Cr~~~~ 61 (115)
T 3l11_A 51 LCCPFCRRRVS 61 (115)
T ss_dssp SBCTTTCCBCH
T ss_pred CCCCCCCcccC
Confidence 34555655553
No 177
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal membrane, metal-binding, metalloprotease; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A 2dq6_A 2dqm_A* 2zxg_A*
Probab=32.87 E-value=11 Score=41.15 Aligned_cols=13 Identities=31% Similarity=0.933 Sum_probs=11.6
Q ss_pred hhHHHHHhHHHHh
Q 016954 358 GTILAHEMMHGWM 370 (380)
Q Consensus 358 g~ilahe~~ha~l 370 (380)
..|+|||++|.|.
T Consensus 313 ~~vIAHElAHqWF 325 (891)
T 3b34_A 313 ERVIGHEYFHNWT 325 (891)
T ss_dssp HHHHHHHHHTTTB
T ss_pred HHHHHHHHHHHHh
Confidence 4899999999994
No 178
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=32.81 E-value=28 Score=25.30 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=14.7
Q ss_pred cccccccccccccccccCCcccC
Q 016954 163 YHKSCYREHYHPKCDVCKHFIPS 185 (380)
Q Consensus 163 YC~~cy~~~f~pkC~~C~~~I~~ 185 (380)
+|..|.... .+|..|...|..
T Consensus 47 ~C~~C~~~~--~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 47 TCKQCAEAV--DKCPMCYTVITF 67 (74)
T ss_dssp CCHHHHTTC--SBCTTTCCBCSE
T ss_pred HHHHhhhcC--ccCCCcCcCccC
Confidence 566665554 688888888864
No 179
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=32.73 E-value=26 Score=27.28 Aligned_cols=47 Identities=9% Similarity=-0.020 Sum_probs=28.8
Q ss_pred CCCcccCCCCCCCCCceeeccCC-cccccccccccc--cccccccCCcccC
Q 016954 138 PECFCCHACHQPITDIEFSTSEN-RPYHKSCYREHY--HPKCDVCKHFIPS 185 (380)
Q Consensus 138 ~~CF~C~~C~~~L~~~~f~~~dg-~~YC~~cy~~~f--~pkC~~C~~~I~~ 185 (380)
+.=|.|..|...+.+-- ....| ..||+.|-.+.+ ...|..|++++..
T Consensus 20 p~~~~CpI~~~~m~dPV-~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPV-VLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSSEE-ECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccCCe-ECCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 45577777777666533 33455 788888754322 3467777776654
No 180
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.66 E-value=14 Score=26.59 Aligned_cols=45 Identities=16% Similarity=0.311 Sum_probs=31.8
Q ss_pred CcccccCCcCCCCCceEEccCCcccChhhhhhhccCCCCCCcchHHH
Q 016954 213 PRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTNECQPLYLDI 259 (380)
Q Consensus 213 F~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~v~~~~~C~~c~~~I 259 (380)
+.|..|...+. +......=|+.||..|....+.....|.-|+.+|
T Consensus 16 ~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 60 (72)
T 2djb_A 16 ILCSICKGYLI--DATTITECLHTFCKSCIVRHFYYSNRCPKCNIVV 60 (72)
T ss_dssp GSCTTTSSCCS--SCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCC
T ss_pred CCCCCCChHHH--CcCEECCCCCHHHHHHHHHHHHcCCcCCCcCccc
Confidence 57888876552 2333236889999999987766667888888443
No 181
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.29 E-value=14 Score=27.20 Aligned_cols=45 Identities=16% Similarity=0.228 Sum_probs=33.4
Q ss_pred CCcccccCCcCCCCCceEEccCCcccChhhhhhhccCCCCCCcchHHH
Q 016954 212 TPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTNECQPLYLDI 259 (380)
Q Consensus 212 CF~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~v~~~~~C~~c~~~I 259 (380)
-+.|..|...+ .... .+.=|+.||..|....+.....|.-|+.++
T Consensus 15 ~~~C~IC~~~~--~~p~-~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 59 (81)
T 2csy_A 15 PFRCFICRQAF--QNPV-VTKCRHYFCESCALEHFRATPRCYICDQPT 59 (81)
T ss_dssp CSBCSSSCSBC--CSEE-ECTTSCEEEHHHHHHHHHHCSBCSSSCCBC
T ss_pred CCCCcCCCchh--cCee-EccCCCHhHHHHHHHHHHCCCcCCCcCccc
Confidence 36799998765 2343 367899999999988766677888888544
No 182
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=32.15 E-value=15 Score=26.84 Aligned_cols=44 Identities=14% Similarity=0.332 Sum_probs=30.5
Q ss_pred CcccccCCcCCCCCceEEccCCcccChhhhhhhccC------CCCCCcchHHH
Q 016954 213 PRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMD------TNECQPLYLDI 259 (380)
Q Consensus 213 F~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~v~~------~~~C~~c~~~I 259 (380)
+.|..|...+. ... .+.=|+.||..|....+.. ...|.-|+.++
T Consensus 20 ~~C~IC~~~~~--~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecw_A 20 VTCPICLELLK--EPV-SADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPY 69 (85)
T ss_dssp TSCTTTCSCCS--SCE-ECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCC
T ss_pred CCCcCCChhhC--cce-eCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcC
Confidence 67888886653 233 3678899999999875544 55777777444
No 183
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=32.04 E-value=29 Score=24.28 Aligned_cols=25 Identities=20% Similarity=0.535 Sum_probs=14.7
Q ss_pred Cccccccccccc--ccccccccCCccc
Q 016954 160 NRPYHKSCYREH--YHPKCDVCKHFIP 184 (380)
Q Consensus 160 g~~YC~~cy~~~--f~pkC~~C~~~I~ 184 (380)
|..||..|..+. ....|..|...|.
T Consensus 25 ~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 25 LHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp TEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 444566665432 2356888877775
No 184
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=31.97 E-value=19 Score=28.02 Aligned_cols=44 Identities=16% Similarity=0.350 Sum_probs=20.1
Q ss_pred cccCCCCCCCCCceeeccCCcccccccccccc--cccccccCCccc
Q 016954 141 FCCHACHQPITDIEFSTSENRPYHKSCYREHY--HPKCDVCKHFIP 184 (380)
Q Consensus 141 F~C~~C~~~L~~~~f~~~dg~~YC~~cy~~~f--~pkC~~C~~~I~ 184 (380)
+.|..|...+........=|..||..|..+.+ ...|..|...|.
T Consensus 16 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (108)
T 2ckl_A 16 LMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVH 61 (108)
T ss_dssp TBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSC
T ss_pred CCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccc
Confidence 45555555544322222345556666654321 234444544443
No 185
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A {Colwellia psychrerythraea}
Probab=31.51 E-value=14 Score=38.19 Aligned_cols=12 Identities=42% Similarity=1.093 Sum_probs=11.1
Q ss_pred hHHHHHhHHHHh
Q 016954 359 TILAHEMMHGWM 370 (380)
Q Consensus 359 ~ilahe~~ha~l 370 (380)
.++|||++|.|.
T Consensus 296 ~viaHElaHqWf 307 (605)
T 3cia_A 296 NLIAHELAHSWS 307 (605)
T ss_dssp HHHHHHHHHTTB
T ss_pred HHHHHHHHHHhh
Confidence 699999999995
No 186
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=31.07 E-value=13 Score=27.49 Aligned_cols=40 Identities=15% Similarity=0.232 Sum_probs=26.8
Q ss_pred CcccccCCcCCCCCceEEccCCcccChhhhhhhccCCCCCCcchHHHHHHHHHhcccccCcccchhhh
Q 016954 213 PRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTNECQPLYLDIQEFYESIHMKLEQQIPLLLVE 280 (380)
Q Consensus 213 F~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~v~~~~~C~~c~~~I~~f~e~~~~~i~~~~p~~lv~ 280 (380)
..|-.|+..|. +...+|.++|..|-.. -||.+.||++|++
T Consensus 9 L~CP~ck~~L~-----~~~~~~~LiC~~cg~~-----------------------YPI~dGIPvmL~~ 48 (69)
T 2pk7_A 9 LACPICKGPLK-----LSADKTELISKGAGLA-----------------------YPIRDGIPVMLES 48 (69)
T ss_dssp CCCTTTCCCCE-----ECTTSSEEEETTTTEE-----------------------EEEETTEECCCGG
T ss_pred eeCCCCCCcCe-----EeCCCCEEEcCCCCcE-----------------------ecCcCCeeeeChh
Confidence 46777776552 1123577788777432 5788899999886
No 187
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=31.02 E-value=22 Score=27.52 Aligned_cols=24 Identities=25% Similarity=0.581 Sum_probs=11.7
Q ss_pred ccccccccccccc-----ccccccCCccc
Q 016954 161 RPYHKSCYREHYH-----PKCDVCKHFIP 184 (380)
Q Consensus 161 ~~YC~~cy~~~f~-----pkC~~C~~~I~ 184 (380)
..||..|..+.+. ..|..|...|.
T Consensus 41 H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 41 HIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp CCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 3456666543321 24555555554
No 188
>3oue_A Cytochrome C family protein; multiheme cytochrome-C, electron transfer, Fe reduction, GEO sulfurreducens, cytochrome C7 (C3) fold; HET: HEM; 2.15A {Geobacter sulfurreducens}
Probab=30.74 E-value=13 Score=32.00 Aligned_cols=86 Identities=13% Similarity=0.339 Sum_probs=44.5
Q ss_pred ccccccccc--cccc--cccccCCcccCCCCcceEEec---ccccccccCCCCccCCCCcccccCCcC-CC---CCceEE
Q 016954 162 PYHKSCYRE--HYHP--KCDVCKHFIPSNHGGLIEYRA---HPFWVQKYCPSHEHDGTPRCCSCERME-PQ---DTAYVA 230 (380)
Q Consensus 162 ~YC~~cy~~--~f~p--kC~~C~~~I~~~~~~~i~~~~---~~fw~qkycp~h~H~~CF~C~~C~r~l-~~---g~~f~~ 230 (380)
-+|..|... .|.+ .|..|...+.+.+ |.+.. ..++ +...|..=+.|..|...+ .. +..+.
T Consensus 56 ~~C~~CH~g~~af~~~~~C~~CH~~~~~~~---i~~~~~~~~V~F-----~H~~H~~~~~C~~CH~~v~~~~~~~~~~t- 126 (158)
T 3oue_A 56 KSCGACHNGKDAFSSASDCGKCHPGLKPAK---LTYKTSVGEAYF-----DHDIHLSMFKCADCHTKVFKYRKGSAPAT- 126 (158)
T ss_dssp CGGGGTBSSSSBCCTTSCHHHHCGGGCCCC---EEEEETTEEEEE-----CHHHHHTTCCGGGTBTTTBCSSTTSSCCC-
T ss_pred CchhhhcCCcccCChhhhchhhhhcccccc---eEeecCCCCccC-----ChhHhCCCCChhhhccchhhcccCCCCcc-
Confidence 356666652 2333 6888887554433 33321 1111 112354448999998543 11 11221
Q ss_pred cc--CCcccChhhhhhhccCCC--CCCcch
Q 016954 231 LD--DGRKLCLECLDSAIMDTN--ECQPLY 256 (380)
Q Consensus 231 l~--dg~~~C~~C~~~~v~~~~--~C~~c~ 256 (380)
+. ..-.+|..|++-...++. .|..|.
T Consensus 127 m~~~~~gk~Cg~CH~gk~Af~~~~~C~~CH 156 (158)
T 3oue_A 127 MADMEKGKSCGVCHNGKDAFSVADDCVKCH 156 (158)
T ss_dssp HHHHHTTCGGGGTBTTTSBCCSSSCGGGTE
T ss_pred hhhhhccChhHhhcCCCccCCCcccHHHHc
Confidence 11 112589999974444443 788775
No 189
>3ayu_A 72 kDa type IV collagenase; protease, hydrolase-hydrolase inhibitor complex; 2.00A {Homo sapiens} PDB: 1qib_A 1hov_A*
Probab=30.60 E-value=18 Score=31.03 Aligned_cols=11 Identities=27% Similarity=0.256 Sum_probs=9.8
Q ss_pred hhHHHHHhHHH
Q 016954 358 GTILAHEMMHG 368 (380)
Q Consensus 358 g~ilahe~~ha 368 (380)
-.|++||++||
T Consensus 115 ~~~~~HE~gH~ 125 (167)
T 3ayu_A 115 FLVAAHAFGHA 125 (167)
T ss_dssp HHHHHHHHHHH
T ss_pred eeehhhhhHHh
Confidence 37999999998
No 190
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=30.25 E-value=15 Score=38.08 Aligned_cols=14 Identities=29% Similarity=0.622 Sum_probs=12.1
Q ss_pred hhhHHHHHhHHHHh
Q 016954 357 TGTILAHEMMHGWM 370 (380)
Q Consensus 357 ~g~ilahe~~ha~l 370 (380)
.-+++|||+.|.|.
T Consensus 267 ~~~liaHE~~H~W~ 280 (597)
T 4fgm_A 267 FLSLCCHEYFHSWN 280 (597)
T ss_dssp HHHHHHHHHHHTTB
T ss_pred hhhhHhhhhheeec
Confidence 45799999999994
No 191
>1slm_A Stromelysin-1; hydrolase, metalloprotease, fibroblast, collagen degradation; 1.90A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11
Probab=29.90 E-value=18 Score=33.37 Aligned_cols=11 Identities=36% Similarity=0.389 Sum_probs=9.9
Q ss_pred hhHHHHHhHHH
Q 016954 358 GTILAHEMMHG 368 (380)
Q Consensus 358 g~ilahe~~ha 368 (380)
-.|++||++||
T Consensus 196 ~~va~HEiGHa 206 (255)
T 1slm_A 196 FLVAAHEIGHS 206 (255)
T ss_dssp HHHHHHHHHHH
T ss_pred hhhhHHHHHHH
Confidence 37999999998
No 192
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A {Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A*
Probab=29.86 E-value=16 Score=38.13 Aligned_cols=12 Identities=42% Similarity=1.088 Sum_probs=11.1
Q ss_pred hHHHHHhHHHHh
Q 016954 359 TILAHEMMHGWM 370 (380)
Q Consensus 359 ~ilahe~~ha~l 370 (380)
.++|||++|.|.
T Consensus 297 ~viaHElAHqWf 308 (632)
T 2xq0_A 297 DVIAHELAHSWS 308 (632)
T ss_dssp HHHHHHHHHTTB
T ss_pred HHHHHHHHHHHh
Confidence 799999999995
No 193
>1y93_A Macrophage metalloelastase; matrix metalloproteinase, MMP12, complex (elastase inhibitor), acetohydroxamic acid, hydrola; 1.03A {Homo sapiens} SCOP: d.92.1.11 PDB: 1rmz_A 1ycm_A* 1z3j_A* 2hu6_A* 2oxu_A 2oxw_A 2oxz_A 3lik_A* 3lil_A* 3lir_A* 3ljg_A* 1os9_A 1os2_A 3f17_A* 3ehy_A* 3ehx_A* 3f15_A* 3f16_A* 3f18_A* 3f19_A* ...
Probab=29.86 E-value=19 Score=30.59 Aligned_cols=12 Identities=25% Similarity=0.155 Sum_probs=10.3
Q ss_pred hhhHHHHHhHHH
Q 016954 357 TGTILAHEMMHG 368 (380)
Q Consensus 357 ~g~ilahe~~ha 368 (380)
.-.|++||++|+
T Consensus 108 ~~~~~~HE~GH~ 119 (159)
T 1y93_A 108 LFLTAVHEIGHS 119 (159)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhhhhhhhhhh
Confidence 347899999998
No 194
>3lq0_A Proastacin; metallopeptidase, zymogen activation, proenzyme, protease, D bond, hydrolase, metal-binding, metalloprotease, zymogen; 1.45A {Astacus astacus} PDB: 1iab_A 1iaa_A 1ast_A 1iac_A 1iad_A 1iae_A 1qji_A* 1qjj_A
Probab=29.64 E-value=18 Score=32.99 Aligned_cols=12 Identities=25% Similarity=0.454 Sum_probs=9.9
Q ss_pred hhHHHHHhHHHH
Q 016954 358 GTILAHEMMHGW 369 (380)
Q Consensus 358 g~ilahe~~ha~ 369 (380)
-.++.||+|||=
T Consensus 121 ~g~i~HEl~HaL 132 (235)
T 3lq0_A 121 HGTILHALMHAI 132 (235)
T ss_dssp HHHHHHHHHHHH
T ss_pred cchHHHHHHHHh
Confidence 368899999983
No 195
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=29.43 E-value=8 Score=26.74 Aligned_cols=47 Identities=21% Similarity=0.456 Sum_probs=32.2
Q ss_pred CcccccCCcCCC----CCceEEccCCcccChhhhhhhccCCCCCCcchHHH
Q 016954 213 PRCCSCERMEPQ----DTAYVALDDGRKLCLECLDSAIMDTNECQPLYLDI 259 (380)
Q Consensus 213 F~C~~C~r~l~~----g~~f~~l~dg~~~C~~C~~~~v~~~~~C~~c~~~I 259 (380)
+.|..|...+.. +...+.+.=|+.+|..|..+.+.....|.-|+.++
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 54 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 54 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccC
Confidence 567888765422 23335567889999999987766667788887443
No 196
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=29.34 E-value=28 Score=27.45 Aligned_cols=46 Identities=28% Similarity=0.503 Sum_probs=34.7
Q ss_pred cCCCCcccccCCcCCCCCceEEccCCcccChhhhhhhccCCCCCCcchHH
Q 016954 209 HDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTNECQPLYLD 258 (380)
Q Consensus 209 H~~CF~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~v~~~~~C~~c~~~ 258 (380)
|-+=+.|.+|- + ....-+. -.++-+|+.|...+...+..|.-|+++
T Consensus 25 ~~G~~nCKsCW--f-~~k~LV~-C~dHYLCl~CLtlmL~~SdrCpIC~~p 70 (99)
T 2ko5_A 25 HLGPQFCKSCW--F-ENKGLVE-CNNHYLCLNCLTLLLSVSNRCPICKMP 70 (99)
T ss_dssp CSCCCCCCSSC--S-CCSSEEE-CSSCEEEHHHHHHTCSSSSEETTTTEE
T ss_pred ccCcccChhhc--c-ccCCeee-ecchhhHHHHHHHHHhhccCCcccCCc
Confidence 44557899998 4 3344453 466889999999988889999999943
No 197
>4ger_A Gentlyase metalloprotease; metalloproteinase, tissue disaggregation, thermoly protease, hydrolase; HET: LYS; 1.59A {Paenibacillus polymyxa}
Probab=29.13 E-value=18 Score=34.46 Aligned_cols=17 Identities=24% Similarity=0.499 Sum_probs=13.4
Q ss_pred hhhHHHHHhHHHHhhhc
Q 016954 357 TGTILAHEMMHGWMRLQ 373 (380)
Q Consensus 357 ~g~ilahe~~ha~l~l~ 373 (380)
.=.|+||||+|+...-.
T Consensus 129 slDVvaHEltHGVt~~t 145 (304)
T 4ger_A 129 DPDVVGHELTHGVTEYT 145 (304)
T ss_dssp SHHHHHHHHHHHHHHTT
T ss_pred ccchhhhcccccccccc
Confidence 34789999999987543
No 198
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=29.11 E-value=24 Score=35.78 Aligned_cols=20 Identities=25% Similarity=0.147 Sum_probs=17.0
Q ss_pred cCCChhhhhhHHHHHhHHHH
Q 016954 350 YGLPRLLTGTILAHEMMHGW 369 (380)
Q Consensus 350 ~glp~~~~g~ilahe~~ha~ 369 (380)
.||...=--+|||||++|.-
T Consensus 322 ~~l~~~El~aVlaHElgH~~ 341 (482)
T 4aw6_A 322 QGCKNEEVLAVLGHELGHWK 341 (482)
T ss_dssp CCCCHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHH
Confidence 36888888999999999964
No 199
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=29.07 E-value=18 Score=30.50 Aligned_cols=44 Identities=11% Similarity=0.388 Sum_probs=20.3
Q ss_pred cccCCCCCCCCCceeeccCCcccccccccccc---cccccccCCccc
Q 016954 141 FCCHACHQPITDIEFSTSENRPYHKSCYREHY---HPKCDVCKHFIP 184 (380)
Q Consensus 141 F~C~~C~~~L~~~~f~~~dg~~YC~~cy~~~f---~pkC~~C~~~I~ 184 (380)
+.|..|...+........=|..||..|..+.+ ...|..|...|.
T Consensus 55 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 55 LMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 34455544443322211334566777765432 234555555543
No 200
>1u4g_A Elastase, pseudolysin; , inhibition, peptidase family M4, hydrolase; HET: HPI; 1.40A {Pseudomonas aeruginosa} SCOP: d.92.1.2 PDB: 1ezm_A* 3dbk_A*
Probab=28.73 E-value=18 Score=34.32 Aligned_cols=16 Identities=31% Similarity=0.605 Sum_probs=13.1
Q ss_pred hhhhHHHHHhHHHHhh
Q 016954 356 LTGTILAHEMMHGWMR 371 (380)
Q Consensus 356 ~~g~ilahe~~ha~l~ 371 (380)
..-.|+||||+|+..-
T Consensus 133 ~~lDVv~HE~tHGVt~ 148 (301)
T 1u4g_A 133 VSLDVAAHEVSHGFTE 148 (301)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred cccceeeeccccceec
Confidence 3568999999999764
No 201
>1bqb_A Protein (aureolysin); hydrolase, metalloproteinase; 1.72A {Staphylococcus aureus} SCOP: d.92.1.2
Probab=28.32 E-value=19 Score=34.24 Aligned_cols=15 Identities=33% Similarity=0.682 Sum_probs=12.4
Q ss_pred hhhHHHHHhHHHHhh
Q 016954 357 TGTILAHEMMHGWMR 371 (380)
Q Consensus 357 ~g~ilahe~~ha~l~ 371 (380)
.-.|+||||+|+..-
T Consensus 138 ~lDVv~HE~tHGVt~ 152 (301)
T 1bqb_A 138 ANDVVAHEITHGVTQ 152 (301)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred ccceeeeecccceec
Confidence 458999999999764
No 202
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=27.95 E-value=27 Score=26.26 Aligned_cols=47 Identities=15% Similarity=0.190 Sum_probs=29.7
Q ss_pred CCCcccCCCCCCCCCceeeccCCcccccccccccc--cccccccCCcccC
Q 016954 138 PECFCCHACHQPITDIEFSTSENRPYHKSCYREHY--HPKCDVCKHFIPS 185 (380)
Q Consensus 138 ~~CF~C~~C~~~L~~~~f~~~dg~~YC~~cy~~~f--~pkC~~C~~~I~~ 185 (380)
+.-|.|..|...+.+- .....|..||+.|-.+.+ ...|..|++.+..
T Consensus 12 p~~~~CpI~~~~m~dP-V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDP-VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhcCC-eECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 4567888887777663 333478888888754322 3467777766653
No 203
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} PDB: 4e36_A*
Probab=27.75 E-value=16 Score=40.15 Aligned_cols=14 Identities=36% Similarity=0.940 Sum_probs=12.1
Q ss_pred hhhHHHHHhHHHHh
Q 016954 357 TGTILAHEMMHGWM 370 (380)
Q Consensus 357 ~g~ilahe~~ha~l 370 (380)
...|+|||++|.|.
T Consensus 364 ~~~vIaHElAHqWF 377 (967)
T 3se6_A 364 VTRVIAHELAHQWF 377 (967)
T ss_dssp HHHHHHHHHGGGTB
T ss_pred HHHHHHHHHHHHHh
Confidence 35799999999995
No 204
>3dnz_A Thermolysin; hydrolase, metalloproteinase, calcium, metal-binding, metalloprotease, protease, secreted, zinc, zymogen; HET: LYS; 1.20A {Bacillus thermoproteolyticus} PDB: 1kjo_A* 1kjp_A* 1kkk_A* 1kl6_A* 1kr6_A* 1kro_A* 1ks7_A* 1kto_A* 1y3g_E* 2whz_A* 2wi0_A* 1kei_A* 3do0_A* 3do1_A* 3do2_A* 3fb0_A 3fbo_A 3fgd_A* 3flf_A* 3fv4_A* ...
Probab=27.70 E-value=20 Score=34.37 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=13.4
Q ss_pred hhhHHHHHhHHHHhhhc
Q 016954 357 TGTILAHEMMHGWMRLQ 373 (380)
Q Consensus 357 ~g~ilahe~~ha~l~l~ 373 (380)
.-.|+||||+|+..--.
T Consensus 136 slDVv~HE~tHgvt~~~ 152 (316)
T 3dnz_A 136 GIDVVAHELTHAVTDYT 152 (316)
T ss_dssp CHHHHHHHHHHHHHHHT
T ss_pred cccceeeeecccccccc
Confidence 35789999999987543
No 205
>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion, cleavag of basic residues, EGF-like domain, glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A {Homo sapiens}
Probab=27.53 E-value=35 Score=34.77 Aligned_cols=16 Identities=25% Similarity=0.285 Sum_probs=13.5
Q ss_pred hhhhhhHHHHHhHHHH
Q 016954 354 RLLTGTILAHEMMHGW 369 (380)
Q Consensus 354 ~~~~g~ilahe~~ha~ 369 (380)
.+.+..++||||+|-+
T Consensus 131 ~~~~A~t~AHELGHnL 146 (510)
T 3g5c_A 131 TDLMAVTLAQSLAHNI 146 (510)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHc
Confidence 4678889999999964
No 206
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=27.36 E-value=9.3 Score=27.12 Aligned_cols=48 Identities=23% Similarity=0.464 Sum_probs=33.1
Q ss_pred CCcccccCCcCCC----CCceEEccCCcccChhhhhhhccCCCCCCcchHHH
Q 016954 212 TPRCCSCERMEPQ----DTAYVALDDGRKLCLECLDSAIMDTNECQPLYLDI 259 (380)
Q Consensus 212 CF~C~~C~r~l~~----g~~f~~l~dg~~~C~~C~~~~v~~~~~C~~c~~~I 259 (380)
-+.|..|-..+.. +...+.+.=|+.||..|..+.+.....|.-|+.++
T Consensus 10 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 61 (71)
T 3ng2_A 10 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 61 (71)
T ss_dssp CCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCcc
Confidence 3678888765422 23335567889999999988766667888887443
No 207
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.25 E-value=30 Score=25.10 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=15.1
Q ss_pred cccccccccccccccccCCcccC
Q 016954 163 YHKSCYREHYHPKCDVCKHFIPS 185 (380)
Q Consensus 163 YC~~cy~~~f~pkC~~C~~~I~~ 185 (380)
+|..|... ..+|..|.+.|..
T Consensus 48 ~C~~C~~~--~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 48 TCKQCAEA--VDKCPMCYTVITF 68 (75)
T ss_dssp BCHHHHHH--CSBCTTTCCBCCC
T ss_pred HHHHHhhC--CCCCccCCceecC
Confidence 56666644 3689999998875
No 208
>2y6d_A Matrilysin; hydrolase; HET: TQJ; 1.60A {Homo sapiens} PDB: 2ddy_A* 1mmq_A* 1mmp_A* 1mmr_A* 2y6c_A*
Probab=27.01 E-value=22 Score=30.60 Aligned_cols=10 Identities=30% Similarity=0.401 Sum_probs=9.4
Q ss_pred hHHHHHhHHH
Q 016954 359 TILAHEMMHG 368 (380)
Q Consensus 359 ~ilahe~~ha 368 (380)
.|++||++||
T Consensus 117 ~~~~HE~gH~ 126 (174)
T 2y6d_A 117 YAATHELGHS 126 (174)
T ss_dssp HHHHHHHHHH
T ss_pred ehhhHHhHhh
Confidence 7999999998
No 209
>4axq_A Archaemetzincin; metalloprotease, protease, hydrolase, metal-bindi; 1.40A {Archaeoglobus fulgidus} PDB: 2xhq_A 3zvs_A 4a3w_A*
Probab=25.95 E-value=40 Score=28.97 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=18.4
Q ss_pred EEEEEecCCC-------hhhhhhHHHHHhHHHH
Q 016954 344 TAILILYGLP-------RLLTGTILAHEMMHGW 369 (380)
Q Consensus 344 ~~il~l~glp-------~~~~g~ilahe~~ha~ 369 (380)
.||+-++-|. ......++|||++|.+
T Consensus 94 ~aVvS~~Rl~~~~~~~~~~r~~k~~~HElGH~l 126 (163)
T 4axq_A 94 RAVLSVFRLTTADSELYRERVVKEAVHEIGHVL 126 (163)
T ss_dssp EEEEECGGGCCSCHHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEecccCCccHHHHHHHHHHHHHHHHHHHc
Confidence 4566666553 4566788999999984
No 210
>2cki_A Ulilysin; metalloprotease, hydrolase; HET: ARG; 1.7A {Methanosarcina acetivorans} PDB: 2j83_A* 3lum_A* 3lun_A*
Probab=25.86 E-value=24 Score=32.70 Aligned_cols=15 Identities=40% Similarity=0.915 Sum_probs=12.0
Q ss_pred hhhHHHHHhHHHHhhh
Q 016954 357 TGTILAHEMMHGWMRL 372 (380)
Q Consensus 357 ~g~ilahe~~ha~l~l 372 (380)
.|.+|+||++| ||=|
T Consensus 162 ~g~TltHEvGH-~LGL 176 (262)
T 2cki_A 162 KGRTATHEIGH-WLNL 176 (262)
T ss_dssp SSHHHHHHHHH-HTTC
T ss_pred ccchhhhhhhh-hhcc
Confidence 47899999999 5544
No 211
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=25.76 E-value=33 Score=26.76 Aligned_cols=46 Identities=7% Similarity=-0.081 Sum_probs=34.5
Q ss_pred CCCCcccccCCcCCCCCceEEccCCcccChhhhhhhccCCCCCCcchHH
Q 016954 210 DGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDTNECQPLYLD 258 (380)
Q Consensus 210 ~~CF~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~v~~~~~C~~c~~~ 258 (380)
+.-|.|..|...+ .++.+ +..|..||..|....+.....|.-|..+
T Consensus 27 p~~~~CpI~~~~m--~dPV~-~~cGhtf~r~~I~~~l~~~~~cP~~~~~ 72 (100)
T 2kre_A 27 PDEFRDPLMDTLM--TDPVR-LPSGTIMDRSIILRHLLNSPTDPFNRQT 72 (100)
T ss_dssp STTTBCTTTCSBC--SSEEE-ETTTEEEEHHHHHHHTTSCSBCSSSCCB
T ss_pred cHhhCCcCccCcc--cCCeE-CCCCCEEchHHHHHHHHcCCCCCCCCCC
Confidence 3458999999766 35544 5799999999998876666677777743
No 212
>3nqx_A MCP-02, secreted metalloprotease MCP02; zinc metalloprotease, alpha/beta protein, hydrolase; 1.70A {Pseudoalteromonas SP} PDB: 3nqy_B 3nqz_B
Probab=25.74 E-value=23 Score=33.81 Aligned_cols=16 Identities=31% Similarity=0.586 Sum_probs=13.2
Q ss_pred hhhhHHHHHhHHHHhh
Q 016954 356 LTGTILAHEMMHGWMR 371 (380)
Q Consensus 356 ~~g~ilahe~~ha~l~ 371 (380)
..-.|+||||+|+..-
T Consensus 134 ~slDVv~HE~tHGvt~ 149 (306)
T 3nqx_A 134 VSLDVSAHEVSHGFTE 149 (306)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred cccchhhhhhcccccc
Confidence 3558999999999874
No 213
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=25.63 E-value=19 Score=27.91 Aligned_cols=44 Identities=16% Similarity=0.289 Sum_probs=26.6
Q ss_pred CcccccCCcCCCCCceEEccCCcccChhhhhhhccCC---CCCCcchHHH
Q 016954 213 PRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDT---NECQPLYLDI 259 (380)
Q Consensus 213 F~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~v~~~---~~C~~c~~~I 259 (380)
+.|..|...+. .... +.=|+.||..|....+... ..|.-|+.++
T Consensus 22 ~~C~IC~~~~~--~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 68 (112)
T 1jm7_A 22 LECPICLELIK--EPVS-TKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI 68 (112)
T ss_dssp TSCSSSCCCCS--SCCB-CTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCC
T ss_pred CCCcccChhhc--CeEE-CCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcC
Confidence 46777765542 2222 4567888888887665433 3677777554
No 214
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=25.43 E-value=30 Score=31.16 Aligned_cols=47 Identities=15% Similarity=0.250 Sum_probs=29.1
Q ss_pred CCCcccCCCCCCCCCceeeccCCcccccccccccc---cccccccCCcccC
Q 016954 138 PECFCCHACHQPITDIEFSTSENRPYHKSCYREHY---HPKCDVCKHFIPS 185 (380)
Q Consensus 138 ~~CF~C~~C~~~L~~~~f~~~dg~~YC~~cy~~~f---~pkC~~C~~~I~~ 185 (380)
+.-|.|..|...+.+. .....|..||..|-.+.. ...|..|+.++..
T Consensus 206 ~~~~~c~i~~~~~~dP-v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMREP-CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCSSE-EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhcCC-eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 4556777776666553 333467788888855332 2348888877764
No 215
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=25.36 E-value=20 Score=39.06 Aligned_cols=14 Identities=36% Similarity=0.805 Sum_probs=11.9
Q ss_pred hhhHHHHHhHHHHh
Q 016954 357 TGTILAHEMMHGWM 370 (380)
Q Consensus 357 ~g~ilahe~~ha~l 370 (380)
...|+|||++|.|.
T Consensus 302 ~~~viaHElAHqWF 315 (897)
T 2xdt_A 302 ITMTVAHELAHQWF 315 (897)
T ss_dssp HHHHHHHHHHTTTB
T ss_pred HHHHHHHHHHHHHc
Confidence 34789999999995
No 216
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=25.34 E-value=63 Score=24.63 Aligned_cols=9 Identities=22% Similarity=0.910 Sum_probs=5.5
Q ss_pred ccccCCccc
Q 016954 115 ICAGCNNEI 123 (380)
Q Consensus 115 ~C~~C~~~I 123 (380)
.|..|..+|
T Consensus 4 ~CP~C~~~l 12 (81)
T 2jrp_A 4 TCPVCHHAL 12 (81)
T ss_dssp CCSSSCSCC
T ss_pred CCCCCCCcc
Confidence 466666665
No 217
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=25.14 E-value=24 Score=25.47 Aligned_cols=44 Identities=20% Similarity=0.468 Sum_probs=30.8
Q ss_pred CcccccCCcCCCCCceEEccCCcccChhhhhhhccC-------CCCCCcchHHH
Q 016954 213 PRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMD-------TNECQPLYLDI 259 (380)
Q Consensus 213 F~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~v~~-------~~~C~~c~~~I 259 (380)
+.|..|...+.. ... +.=|+.||..|....+.. ...|.-|+.++
T Consensus 13 ~~C~IC~~~~~~--p~~-l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~ 63 (79)
T 2egp_A 13 VTCPICLELLTE--PLS-LDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISY 63 (79)
T ss_dssp CEETTTTEECSS--CCC-CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCC
T ss_pred CCCcCCCcccCC--eeE-CCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcC
Confidence 678999876532 222 568899999999876544 45788887544
No 218
>2vqx_A Metalloproteinase; thermolysin-like structure, zinc, protease, hydrolase, metalloprotease; 1.82A {Serratia proteamaculans}
Probab=24.96 E-value=24 Score=34.18 Aligned_cols=16 Identities=19% Similarity=0.362 Sum_probs=12.8
Q ss_pred hhhHHHHHhHHHHhhh
Q 016954 357 TGTILAHEMMHGWMRL 372 (380)
Q Consensus 357 ~g~ilahe~~ha~l~l 372 (380)
.-.|+||||+|+..--
T Consensus 156 ~lDVv~HEltHGVt~~ 171 (341)
T 2vqx_A 156 AIDVVGHALAHGVTES 171 (341)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred chhhhhhhcccceecc
Confidence 4579999999997643
No 219
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=24.90 E-value=23 Score=29.89 Aligned_cols=45 Identities=18% Similarity=0.408 Sum_probs=32.0
Q ss_pred CcccccCCcCCCCCceEEccCCcccChhhhhhhccC-CCCCCcchHHH
Q 016954 213 PRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMD-TNECQPLYLDI 259 (380)
Q Consensus 213 F~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~v~~-~~~C~~c~~~I 259 (380)
+.|..|...+. .......=|+.||..|....+.. ...|.-|+.+|
T Consensus 55 ~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 55 LMCPICLDMLK--NTMTTKECLHRFCADCIITALRSGNKECPTCRKKL 100 (165)
T ss_dssp HBCTTTSSBCS--SEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCCcccChHhh--CcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcC
Confidence 57888876653 34333377999999999887664 56788888554
No 220
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=24.85 E-value=37 Score=24.12 Aligned_cols=55 Identities=16% Similarity=0.322 Sum_probs=29.1
Q ss_pred ccccccCCcccCCCCcceEEecccccccccCCCCccCCCCcccccCCcCCCCCceEEccCCcccChhhhhh
Q 016954 174 PKCDVCKHFIPSNHGGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMEPQDTAYVALDDGRKLCLECLDS 244 (380)
Q Consensus 174 pkC~~C~~~I~~~~~~~i~~~~~~fw~qkycp~h~H~~CF~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~ 244 (380)
..|.+|+..-..+.+.+| .=. .|+..||..|..= ++ ....+ ..++.++|..|...
T Consensus 7 ~~C~vC~~~~~~~~~~ll-~Cd-------~C~~~~H~~C~~p-----~l--~~~~~-~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 7 GVCTICQEEYSEAPNEMV-ICD-------KCGQGYHQLCHTP-----HI--DSSVI-DSDEKWLCRQCVFA 61 (66)
T ss_dssp CCBSSSCCCCCBTTBCEE-ECS-------SSCCEEETTTSSS-----CC--CHHHH-HSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCEE-ECC-------CCChHHHhhhCCC-----cc--ccccc-CCCCCEECCCCcCc
Confidence 467778765332221222 221 3667778766531 11 11111 15788999999765
No 221
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=24.29 E-value=36 Score=27.78 Aligned_cols=23 Identities=22% Similarity=0.599 Sum_probs=11.3
Q ss_pred cccccccccc--ccccccccCCccc
Q 016954 162 PYHKSCYREH--YHPKCDVCKHFIP 184 (380)
Q Consensus 162 ~YC~~cy~~~--f~pkC~~C~~~I~ 184 (380)
.||..|..+. ....|..|...|.
T Consensus 74 ~fc~~Ci~~~~~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 74 SFCSYCINEWMKRKIECPICRKDIK 98 (138)
T ss_dssp EEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred CccHHHHHHHHHcCCcCCCCCCcCC
Confidence 4555554321 1345666666654
No 222
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=24.26 E-value=28 Score=26.84 Aligned_cols=26 Identities=19% Similarity=0.455 Sum_probs=15.3
Q ss_pred Ccccccccccccc--c-ccccccCCcccC
Q 016954 160 NRPYHKSCYREHY--H-PKCDVCKHFIPS 185 (380)
Q Consensus 160 g~~YC~~cy~~~f--~-pkC~~C~~~I~~ 185 (380)
|..||..|..+.+ . ..|..|...+..
T Consensus 42 gH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 42 SKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp CCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 4557777765432 1 467777776654
No 223
>1rm8_A MMP-16, matrix metalloproteinase-16, MT3-MMP; membrane type - matrix metalloproteinase, batimastat, hydroxamate inhibitor, protease, hydrolase; HET: BAT; 1.80A {Homo sapiens} SCOP: d.92.1.11
Probab=24.16 E-value=27 Score=29.71 Aligned_cols=11 Identities=27% Similarity=0.332 Sum_probs=9.7
Q ss_pred hhHHHHHhHHH
Q 016954 358 GTILAHEMMHG 368 (380)
Q Consensus 358 g~ilahe~~ha 368 (380)
-.|++||++|+
T Consensus 118 ~~~~~he~gh~ 128 (169)
T 1rm8_A 118 FLVAVHELGHA 128 (169)
T ss_dssp HHHHHHHHHHH
T ss_pred eeehhhhhhhh
Confidence 37899999998
No 224
>3ahn_A Oligopeptidase, PZ peptidase A; hydrolase, hydrolase-hydrolase inhibitor complex; HET: 3A1; 1.80A {Geobacillus SP} PDB: 3ahm_A* 3aho_A* 2h1n_A 2h1j_A
Probab=23.45 E-value=28 Score=35.47 Aligned_cols=14 Identities=29% Similarity=0.482 Sum_probs=10.8
Q ss_pred hHHHHHhHHHHhhh
Q 016954 359 TILAHEMMHGWMRL 372 (380)
Q Consensus 359 ~ilahe~~ha~l~l 372 (380)
..|+|||+||+--+
T Consensus 352 ~TL~HE~GHa~H~~ 365 (564)
T 3ahn_A 352 DVLTHEAGHAFQVY 365 (564)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHhCHHHHHH
Confidence 45999999986533
No 225
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=23.08 E-value=37 Score=29.68 Aligned_cols=47 Identities=15% Similarity=0.247 Sum_probs=29.4
Q ss_pred CCCcccCCCCCCCCCceeeccCCccccccccccc---ccccccccCCcccC
Q 016954 138 PECFCCHACHQPITDIEFSTSENRPYHKSCYREH---YHPKCDVCKHFIPS 185 (380)
Q Consensus 138 ~~CF~C~~C~~~L~~~~f~~~dg~~YC~~cy~~~---f~pkC~~C~~~I~~ 185 (380)
|.-|.|..|...+.+ ......|..||..|-... .+..|..|+.++..
T Consensus 104 p~~f~CPI~~elm~D-PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCCC-CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 455667777666655 333357788888875432 23358888877764
No 226
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=22.85 E-value=27 Score=27.81 Aligned_cols=21 Identities=24% Similarity=0.562 Sum_probs=15.2
Q ss_pred cccccccccccccCCcccCCC
Q 016954 167 CYREHYHPKCDVCKHFIPSNH 187 (380)
Q Consensus 167 cy~~~f~pkC~~C~~~I~~~~ 187 (380)
-|.+....+|..|++.|.-..
T Consensus 19 EyAkS~Ra~Ck~C~~kI~Kge 39 (106)
T 2dmj_A 19 EYAKSGRASCKKCSESIPKDS 39 (106)
T ss_dssp EECCSSCCBCSSSCCBCCTTC
T ss_pred EEeCCCCCcchhhCCccCCCC
Confidence 345555678999999998654
No 227
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=22.74 E-value=22 Score=26.66 Aligned_cols=42 Identities=21% Similarity=0.509 Sum_probs=20.2
Q ss_pred cccCCCCCCCCCceeecc-CCcccccccccccc----cccccccCCcc
Q 016954 141 FCCHACHQPITDIEFSTS-ENRPYHKSCYREHY----HPKCDVCKHFI 183 (380)
Q Consensus 141 F~C~~C~~~L~~~~f~~~-dg~~YC~~cy~~~f----~pkC~~C~~~I 183 (380)
|.|..|...+.+. .... =|..||..|..+.+ ...|..|...+
T Consensus 14 ~~C~IC~~~~~~p-~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 14 LLCLICKDIMTDA-VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp TEETTTTEECSSC-EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCCCCCChhhcCc-eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 4455554444332 1222 25567777765432 13566666554
No 228
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=22.71 E-value=24 Score=24.62 Aligned_cols=30 Identities=13% Similarity=0.306 Sum_probs=19.8
Q ss_pred cCCcccccccccccc---cccccccCCcccCCC
Q 016954 158 SENRPYHKSCYREHY---HPKCDVCKHFIPSNH 187 (380)
Q Consensus 158 ~dg~~YC~~cy~~~f---~pkC~~C~~~I~~~~ 187 (380)
.=|..||..|..+.+ ...|..|.+.+..+.
T Consensus 25 ~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 25 VCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp TTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred CCCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 345567777765542 356899998887653
No 229
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=21.94 E-value=31 Score=27.46 Aligned_cols=25 Identities=16% Similarity=0.417 Sum_probs=14.8
Q ss_pred cccccccccccc---cccccccCCcccC
Q 016954 161 RPYHKSCYREHY---HPKCDVCKHFIPS 185 (380)
Q Consensus 161 ~~YC~~cy~~~f---~pkC~~C~~~I~~ 185 (380)
..||..|....+ ...|..|...|..
T Consensus 72 H~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 72 HNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp CEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 346666654332 2367777777754
No 230
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=21.79 E-value=39 Score=25.07 Aligned_cols=47 Identities=15% Similarity=0.279 Sum_probs=29.6
Q ss_pred CcccccCCcCCCC-CceEEccCCcccChhhhhhhcc-CCCCCCcchHHH
Q 016954 213 PRCCSCERMEPQD-TAYVALDDGRKLCLECLDSAIM-DTNECQPLYLDI 259 (380)
Q Consensus 213 F~C~~C~r~l~~g-~~f~~l~dg~~~C~~C~~~~v~-~~~~C~~c~~~I 259 (380)
+.|..|-.++... ..+....=|+.+|..|+..+.. ....|..|++++
T Consensus 12 ~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~ 60 (78)
T 1e4u_A 12 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY 60 (78)
T ss_dssp CBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBC
T ss_pred CcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCcc
Confidence 5677777655322 2333233688899999987642 345788888444
No 231
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=21.68 E-value=26 Score=29.08 Aligned_cols=44 Identities=18% Similarity=0.408 Sum_probs=31.6
Q ss_pred CcccccCCcCCCCCceEEccCCcccChhhhhhhccCC-CCCCcchHHH
Q 016954 213 PRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMDT-NECQPLYLDI 259 (380)
Q Consensus 213 F~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~v~~~-~~C~~c~~~I 259 (380)
|.|..|...+. .. +...=|..||..|..+.+... ..|.-|+.+|
T Consensus 32 ~~C~IC~~~~~--~p-v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 32 YLCSACRNVLR--RP-FQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GBCTTTCSBCS--SE-EECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCCCCCChhhc--Cc-EECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 67888987653 33 346788999999998876544 3788888654
No 232
>3sks_A Putative oligoendopeptidase F; structural genomics, center for structural genomics of infec diseases, csgid, protease, hydrolase; 2.05A {Bacillus anthracis}
Probab=21.24 E-value=33 Score=35.21 Aligned_cols=14 Identities=29% Similarity=0.482 Sum_probs=11.1
Q ss_pred hHHHHHhHHHHhhh
Q 016954 359 TILAHEMMHGWMRL 372 (380)
Q Consensus 359 ~ilahe~~ha~l~l 372 (380)
..||||++||+--+
T Consensus 355 ~TL~HE~GHalH~~ 368 (567)
T 3sks_A 355 DVLTHEAGHAFQVY 368 (567)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHccHHHHHH
Confidence 56999999997543
No 233
>1yx4_A 26S proteasome non-ATPase regulatory subunit 4; polyubiquitin, UIM, hydrolase; NMR {Homo sapiens} PDB: 1yx5_A 1yx6_A 2kde_A 2kdf_A
Probab=21.24 E-value=19 Score=30.08 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=14.6
Q ss_pred chHHHHHHHhchhhhhhcC
Q 016954 45 NEDIDRAIALSLLEENQKG 63 (380)
Q Consensus 45 ~e~~~~aia~sl~e~~~~~ 63 (380)
+.+|.-||++||.|+..+.
T Consensus 39 DPeLa~ALr~Smeee~~Rq 57 (132)
T 1yx4_A 39 DPELALALRVSMEEQRQRQ 57 (132)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhHHHHHHHH
Confidence 4588888999998885554
No 234
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=21.20 E-value=50 Score=25.55 Aligned_cols=45 Identities=4% Similarity=-0.167 Sum_probs=33.4
Q ss_pred CCCcccccCCcCCCCCceEEccCC-cccChhhhhhhccCCCCCCcchHH
Q 016954 211 GTPRCCSCERMEPQDTAYVALDDG-RKLCLECLDSAIMDTNECQPLYLD 258 (380)
Q Consensus 211 ~CF~C~~C~r~l~~g~~f~~l~dg-~~~C~~C~~~~v~~~~~C~~c~~~ 258 (380)
.-|.|..|...+ .+..+ +..| ..||+.|....+.....|--|..+
T Consensus 21 ~~~~CpI~~~~m--~dPV~-~~cG~htf~r~cI~~~l~~~~~cP~~~~~ 66 (98)
T 1wgm_A 21 DEFLDPIMSTLM--CDPVV-LPSSRVTVDRSTIARHLLSDQTDPFNRSP 66 (98)
T ss_dssp TTTBCTTTCSBC--SSEEE-CTTTCCEEEHHHHHHHTTTSCBCTTTCSB
T ss_pred HhcCCcCccccc--cCCeE-CCCCCeEECHHHHHHHHHhCCCCCCCCCC
Confidence 448999999766 34544 6788 999999998876666677777733
No 235
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=21.16 E-value=40 Score=26.85 Aligned_cols=44 Identities=18% Similarity=0.475 Sum_probs=31.2
Q ss_pred CcccccCCcCCCCCceEEccCCcccChhhhhhhccC-CCCCCcchHHH
Q 016954 213 PRCCSCERMEPQDTAYVALDDGRKLCLECLDSAIMD-TNECQPLYLDI 259 (380)
Q Consensus 213 F~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~v~~-~~~C~~c~~~I 259 (380)
+.|..|...+. .. +.+.=|+.||..|....... ...|.-|+.++
T Consensus 53 ~~C~IC~~~~~--~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 97 (124)
T 3fl2_A 53 FQCICCQELVF--RP-ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDL 97 (124)
T ss_dssp TBCTTTSSBCS--SE-EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCCCcCChHHc--Cc-EEeeCCCcccHHHHHHHHhHCcCCCCCCCccC
Confidence 67888886653 33 34678999999999876543 34788888554
No 236
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.09 E-value=87 Score=20.70 Aligned_cols=30 Identities=17% Similarity=0.539 Sum_probs=21.6
Q ss_pred CcccccCCcCCCCCceEEccCCcccChhhhhhh
Q 016954 213 PRCCSCERMEPQDTAYVALDDGRKLCLECLDSA 245 (380)
Q Consensus 213 F~C~~C~r~l~~g~~f~~l~dg~~~C~~C~~~~ 245 (380)
+.|..|...+.. .. .+.=|+.||..|..+.
T Consensus 16 ~~C~IC~~~~~~--p~-~~~CgH~fC~~Ci~~~ 45 (58)
T 2ecj_A 16 ASCSVCLEYLKE--PV-IIECGHNFCKACITRW 45 (58)
T ss_dssp CBCSSSCCBCSS--CC-CCSSCCCCCHHHHHHH
T ss_pred CCCccCCcccCc--cE-eCCCCCccCHHHHHHH
Confidence 678888876532 22 2568899999998875
No 237
>3gor_A Putative metal-dependent hydrolase; structural genomics, DINB superfamily, PSI-2, protein structure initiative; 2.51A {Geobacillus stearothermophilus}
Probab=20.29 E-value=67 Score=25.65 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=19.6
Q ss_pred hhhhhHHHHHhHH-----HHhhhcCCCCCC
Q 016954 355 LLTGTILAHEMMH-----GWMRLQGAFCLF 379 (380)
Q Consensus 355 ~~~g~ilahe~~h-----a~l~l~g~~~l~ 379 (380)
.+...++.|+.-| +|||+.|+..||
T Consensus 122 ~~l~~~~~H~~hHrGQi~~~lR~lG~~~~p 151 (157)
T 3gor_A 122 QFLQLAMDHEIHHKGQLFVYVRGMGHTDLP 151 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Confidence 4455678899887 699999987775
No 238
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=20.21 E-value=26 Score=27.34 Aligned_cols=14 Identities=21% Similarity=0.437 Sum_probs=9.9
Q ss_pred cccccccccCCccc
Q 016954 171 HYHPKCDVCKHFIP 184 (380)
Q Consensus 171 ~f~pkC~~C~~~I~ 184 (380)
+..+.|..|+.-|-
T Consensus 14 ~~~qiCqiCGD~VG 27 (93)
T 1weo_A 14 LDGQFCEICGDQIG 27 (93)
T ss_dssp CSSCBCSSSCCBCC
T ss_pred cCCCccccccCccc
Confidence 34567888888775
No 239
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=20.20 E-value=35 Score=28.73 Aligned_cols=45 Identities=20% Similarity=0.450 Sum_probs=27.7
Q ss_pred cccCCCCCCCCCceeeccCCcccccccccccc---cccccccCCcccCC
Q 016954 141 FCCHACHQPITDIEFSTSENRPYHKSCYREHY---HPKCDVCKHFIPSN 186 (380)
Q Consensus 141 F~C~~C~~~L~~~~f~~~dg~~YC~~cy~~~f---~pkC~~C~~~I~~~ 186 (380)
|.|..|...+... ....-|..||..|..+.+ ..+|..|...|..+
T Consensus 19 ~~C~IC~~~~~~p-v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 19 YECPICLMALREA-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp GBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCChhhcCc-EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 5566666655543 223456677888776543 23788888777653
No 240
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*
Probab=20.18 E-value=34 Score=35.55 Aligned_cols=12 Identities=25% Similarity=0.470 Sum_probs=9.8
Q ss_pred hhHHHHHhHHHH
Q 016954 358 GTILAHEMMHGW 369 (380)
Q Consensus 358 g~ilahe~~ha~ 369 (380)
-.+++||+|||=
T Consensus 125 ~Gti~HEl~HAL 136 (592)
T 4gwm_A 125 IATVQHEFLHAL 136 (592)
T ss_dssp HHHHHHHHHHHH
T ss_pred CChHHHHHHHHh
Confidence 367899999983
Done!