Query 016955
Match_columns 380
No_of_seqs 200 out of 1813
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 04:20:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016955.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016955hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02851 3-hydroxyisobutyryl-C 100.0 7.6E-72 1.6E-76 549.3 40.8 360 11-370 41-400 (407)
2 PLN02157 3-hydroxyisobutyryl-C 100.0 2.3E-70 5E-75 539.1 39.7 369 6-374 31-399 (401)
3 PLN02988 3-hydroxyisobutyryl-C 100.0 2E-70 4.3E-75 537.9 38.6 362 9-370 6-369 (381)
4 PLN02874 3-hydroxyisobutyryl-C 100.0 4.4E-68 9.6E-73 523.1 37.6 362 7-371 6-367 (379)
5 KOG1684 Enoyl-CoA hydratase [L 100.0 8.8E-68 1.9E-72 493.7 30.4 360 11-374 37-399 (401)
6 PRK05617 3-hydroxyisobutyryl-C 100.0 2.5E-65 5.5E-70 497.8 34.3 338 12-358 3-342 (342)
7 PRK05980 enoyl-CoA hydratase; 100.0 2.1E-53 4.6E-58 400.6 28.7 256 12-339 3-260 (260)
8 PRK09076 enoyl-CoA hydratase; 100.0 4.1E-53 8.8E-58 398.2 29.3 254 11-341 2-257 (258)
9 PRK05862 enoyl-CoA hydratase; 100.0 3.3E-53 7.1E-58 398.7 28.5 254 11-342 3-257 (257)
10 PRK06142 enoyl-CoA hydratase; 100.0 3.8E-53 8.3E-58 401.4 28.8 260 10-341 4-272 (272)
11 PRK05809 3-hydroxybutyryl-CoA 100.0 5.4E-53 1.2E-57 397.9 28.9 257 10-342 2-260 (260)
12 PRK06127 enoyl-CoA hydratase; 100.0 7.3E-53 1.6E-57 398.7 29.8 266 3-342 2-269 (269)
13 PRK09674 enoyl-CoA hydratase-i 100.0 4.4E-53 9.6E-58 397.2 27.7 252 12-341 2-254 (255)
14 PRK08150 enoyl-CoA hydratase; 100.0 6.3E-53 1.4E-57 396.0 28.6 252 12-341 2-254 (255)
15 PRK07799 enoyl-CoA hydratase; 100.0 7.8E-53 1.7E-57 397.4 29.1 260 10-342 3-263 (263)
16 PRK08140 enoyl-CoA hydratase; 100.0 1.1E-52 2.3E-57 396.3 28.8 259 10-341 2-261 (262)
17 PRK09120 p-hydroxycinnamoyl Co 100.0 1.1E-52 2.4E-57 398.4 28.9 258 10-337 6-267 (275)
18 PLN02664 enoyl-CoA hydratase/d 100.0 9.4E-53 2E-57 399.1 28.4 259 11-341 7-274 (275)
19 PRK07657 enoyl-CoA hydratase; 100.0 1.2E-52 2.7E-57 395.4 28.4 256 11-342 2-260 (260)
20 PRK08258 enoyl-CoA hydratase; 100.0 1.6E-52 3.5E-57 397.9 29.4 257 13-341 18-276 (277)
21 PRK07658 enoyl-CoA hydratase; 100.0 1.3E-52 2.9E-57 394.6 28.0 254 12-341 2-256 (257)
22 PRK09245 enoyl-CoA hydratase; 100.0 1.6E-52 3.4E-57 396.0 28.1 259 11-341 2-265 (266)
23 PRK08139 enoyl-CoA hydratase; 100.0 2.1E-52 4.5E-57 394.8 28.9 257 10-342 9-266 (266)
24 PLN02600 enoyl-CoA hydratase 100.0 1.5E-52 3.3E-57 392.6 27.5 248 19-342 2-251 (251)
25 PRK08252 enoyl-CoA hydratase; 100.0 2.4E-52 5.3E-57 392.0 28.1 251 11-341 2-253 (254)
26 TIGR02280 PaaB1 phenylacetate 100.0 2.2E-52 4.8E-57 392.8 27.8 254 14-341 1-255 (256)
27 PRK06563 enoyl-CoA hydratase; 100.0 1.7E-52 3.6E-57 393.4 26.2 252 14-341 1-254 (255)
28 PRK05995 enoyl-CoA hydratase; 100.0 2.7E-52 5.9E-57 393.5 27.8 259 10-342 2-262 (262)
29 PRK05981 enoyl-CoA hydratase; 100.0 2.8E-52 6.1E-57 394.2 27.9 261 9-341 1-265 (266)
30 PRK08138 enoyl-CoA hydratase; 100.0 4.3E-52 9.4E-57 391.8 28.9 254 10-341 5-260 (261)
31 PRK06494 enoyl-CoA hydratase; 100.0 3.7E-52 8.1E-57 391.8 27.6 253 10-341 2-258 (259)
32 PRK07511 enoyl-CoA hydratase; 100.0 6.5E-52 1.4E-56 390.6 28.6 256 12-340 3-259 (260)
33 KOG1680 Enoyl-CoA hydratase [L 100.0 3.8E-53 8.3E-58 384.8 19.1 251 13-341 38-289 (290)
34 PRK07659 enoyl-CoA hydratase; 100.0 7.9E-52 1.7E-56 389.8 27.3 254 12-342 6-260 (260)
35 PRK07327 enoyl-CoA hydratase; 100.0 1.4E-51 3.1E-56 389.6 28.6 260 4-341 3-267 (268)
36 PRK07468 enoyl-CoA hydratase; 100.0 1.7E-51 3.7E-56 388.0 28.2 258 10-341 2-261 (262)
37 PRK06495 enoyl-CoA hydratase; 100.0 2.1E-51 4.5E-56 386.3 27.8 255 9-341 1-256 (257)
38 PRK06210 enoyl-CoA hydratase; 100.0 2.3E-51 4.9E-56 389.3 26.9 261 9-341 2-271 (272)
39 PRK06688 enoyl-CoA hydratase; 100.0 3E-51 6.5E-56 385.9 27.2 255 10-341 3-258 (259)
40 PRK05864 enoyl-CoA hydratase; 100.0 3.6E-51 7.8E-56 388.5 27.7 263 8-342 5-275 (276)
41 PRK06143 enoyl-CoA hydratase; 100.0 3.4E-51 7.3E-56 384.5 27.2 247 10-331 4-253 (256)
42 PRK05674 gamma-carboxygeranoyl 100.0 2.3E-51 5E-56 387.5 26.1 257 11-341 4-263 (265)
43 PRK03580 carnitinyl-CoA dehydr 100.0 4.2E-51 9.2E-56 385.1 27.5 252 12-341 3-260 (261)
44 TIGR03210 badI 2-ketocyclohexa 100.0 3.3E-51 7.1E-56 384.7 26.6 252 11-341 1-255 (256)
45 TIGR01929 menB naphthoate synt 100.0 3.3E-51 7.1E-56 385.3 26.6 254 12-341 2-258 (259)
46 PRK07260 enoyl-CoA hydratase; 100.0 3.5E-51 7.5E-56 384.5 26.7 251 11-331 1-252 (255)
47 PRK07509 enoyl-CoA hydratase; 100.0 1E-50 2.3E-55 382.8 28.5 256 10-340 1-261 (262)
48 PRK06144 enoyl-CoA hydratase; 100.0 7.8E-51 1.7E-55 383.4 27.3 253 10-341 6-261 (262)
49 PRK11423 methylmalonyl-CoA dec 100.0 6.5E-51 1.4E-55 383.6 26.6 256 9-342 1-261 (261)
50 PRK08260 enoyl-CoA hydratase; 100.0 8.1E-51 1.7E-55 389.7 27.5 260 10-342 2-278 (296)
51 PRK06072 enoyl-CoA hydratase; 100.0 1.9E-50 4.2E-55 377.7 28.8 247 14-342 2-248 (248)
52 PRK08259 enoyl-CoA hydratase; 100.0 7.3E-51 1.6E-55 381.8 25.1 249 11-337 2-251 (254)
53 PRK07396 dihydroxynaphthoic ac 100.0 2.6E-50 5.7E-55 381.9 27.8 257 10-342 11-269 (273)
54 COG1024 CaiD Enoyl-CoA hydrata 100.0 2.6E-50 5.7E-55 379.0 27.1 253 10-339 3-257 (257)
55 TIGR03189 dienoyl_CoA_hyt cycl 100.0 3.8E-50 8.2E-55 376.2 27.8 245 14-341 3-250 (251)
56 PRK05870 enoyl-CoA hydratase; 100.0 1.6E-50 3.6E-55 378.5 24.9 246 10-331 1-248 (249)
57 PRK07854 enoyl-CoA hydratase; 100.0 6.6E-50 1.4E-54 373.0 27.5 240 14-341 2-242 (243)
58 PRK06023 enoyl-CoA hydratase; 100.0 3.3E-50 7.2E-55 376.9 25.1 244 12-331 3-250 (251)
59 PLN02888 enoyl-CoA hydratase 100.0 9.6E-50 2.1E-54 376.3 27.9 254 10-340 7-262 (265)
60 PRK07827 enoyl-CoA hydratase; 100.0 1.1E-49 2.3E-54 375.4 27.6 255 11-340 5-259 (260)
61 PLN02921 naphthoate synthase 100.0 2.2E-49 4.7E-54 382.7 27.4 258 8-341 61-322 (327)
62 PRK07938 enoyl-CoA hydratase; 100.0 1.7E-49 3.7E-54 371.5 25.2 242 17-337 7-249 (249)
63 PF00378 ECH: Enoyl-CoA hydrat 100.0 1.1E-49 2.5E-54 372.1 23.7 243 15-331 1-244 (245)
64 PRK12478 enoyl-CoA hydratase; 100.0 1.2E-49 2.7E-54 381.2 24.1 257 11-343 4-282 (298)
65 PLN03214 probable enoyl-CoA hy 100.0 5.4E-49 1.2E-53 373.4 26.6 251 9-332 8-263 (278)
66 PRK07112 polyketide biosynthes 100.0 1.1E-48 2.4E-53 367.4 26.5 251 11-341 3-254 (255)
67 PRK08321 naphthoate synthase; 100.0 1E-48 2.2E-53 375.7 26.8 259 11-342 22-298 (302)
68 PRK07110 polyketide biosynthes 100.0 1.3E-48 2.9E-53 365.6 26.5 245 9-330 2-247 (249)
69 PRK06190 enoyl-CoA hydratase; 100.0 5.8E-48 1.2E-52 362.6 26.7 248 10-331 2-251 (258)
70 TIGR03222 benzo_boxC benzoyl-C 100.0 1.1E-46 2.4E-51 383.3 25.9 254 14-343 260-545 (546)
71 PRK08184 benzoyl-CoA-dihydrodi 100.0 2.2E-46 4.7E-51 382.3 25.9 253 15-343 265-549 (550)
72 PRK05869 enoyl-CoA hydratase; 100.0 4.8E-46 1E-50 342.2 22.7 214 11-296 2-221 (222)
73 PRK08290 enoyl-CoA hydratase; 100.0 2.1E-45 4.5E-50 350.5 24.1 235 10-313 2-256 (288)
74 PRK11730 fadB multifunctional 100.0 4.6E-44 1E-48 378.4 27.9 281 13-333 7-297 (715)
75 PRK08788 enoyl-CoA hydratase; 100.0 1.1E-43 2.5E-48 337.1 27.4 248 13-331 18-275 (287)
76 PRK06213 enoyl-CoA hydratase; 100.0 3.5E-44 7.7E-49 331.8 23.0 224 11-309 2-227 (229)
77 PRK08272 enoyl-CoA hydratase; 100.0 5.8E-44 1.2E-48 343.2 24.2 222 6-297 4-247 (302)
78 KOG1679 Enoyl-CoA hydratase [L 100.0 1.3E-44 2.7E-49 316.2 16.9 258 12-341 27-290 (291)
79 KOG1681 Enoyl-CoA isomerase [L 100.0 1.5E-44 3.2E-49 318.5 14.9 262 9-340 16-290 (292)
80 PRK11154 fadJ multifunctional 100.0 2.1E-42 4.5E-47 365.8 27.9 282 12-333 5-294 (708)
81 TIGR03200 dearomat_oah 6-oxocy 100.0 5.8E-42 1.3E-46 328.7 27.6 286 22-332 38-328 (360)
82 TIGR02440 FadJ fatty oxidation 100.0 9.1E-42 2E-46 360.2 26.6 278 16-333 5-289 (699)
83 KOG0016 Enoyl-CoA hydratase/is 100.0 4.7E-41 1E-45 303.0 21.9 256 8-333 3-263 (266)
84 PLN02267 enoyl-CoA hydratase/i 100.0 9.4E-41 2E-45 310.4 23.1 182 14-198 2-188 (239)
85 KOG1682 Enoyl-CoA isomerase [L 100.0 8.4E-41 1.8E-45 290.0 19.3 254 12-341 32-286 (287)
86 TIGR02437 FadB fatty oxidation 100.0 5.7E-40 1.2E-44 346.7 28.5 288 13-333 7-297 (714)
87 TIGR02441 fa_ox_alpha_mit fatt 100.0 6.7E-39 1.4E-43 339.3 28.6 302 9-333 10-321 (737)
88 COG0447 MenB Dihydroxynaphthoi 100.0 1.8E-40 3.8E-45 290.6 10.2 257 9-340 15-276 (282)
89 cd06558 crotonase-like Crotona 100.0 4.5E-38 9.7E-43 283.5 20.0 184 14-199 1-185 (195)
90 TIGR03222 benzo_boxC benzoyl-C 100.0 1.7E-37 3.7E-42 316.1 22.4 195 4-199 3-216 (546)
91 PRK08184 benzoyl-CoA-dihydrodi 100.0 1.4E-36 3E-41 310.3 22.1 195 4-199 7-220 (550)
92 PF13766 ECH_C: 2-enoyl-CoA Hy 99.9 1.8E-24 3.8E-29 179.0 11.0 117 234-357 2-118 (118)
93 cd07014 S49_SppA Signal peptid 99.8 5.8E-19 1.3E-23 156.9 10.7 140 39-198 22-172 (177)
94 cd07020 Clp_protease_NfeD_1 No 99.8 3.3E-18 7.2E-23 153.4 13.8 145 23-196 2-166 (187)
95 cd07019 S49_SppA_1 Signal pept 99.6 2.1E-15 4.5E-20 137.8 10.2 156 22-197 2-205 (211)
96 cd00394 Clp_protease_like Case 99.5 1.3E-13 2.8E-18 120.6 12.6 134 36-192 8-161 (161)
97 cd07022 S49_Sppa_36K_type Sign 99.5 2.2E-13 4.8E-18 124.7 12.8 96 28-144 13-109 (214)
98 cd07023 S49_Sppa_N_C Signal pe 99.5 4.4E-13 9.6E-18 122.2 11.4 154 22-197 2-202 (208)
99 cd07016 S14_ClpP_1 Caseinolyti 99.4 6.9E-13 1.5E-17 115.9 10.5 128 39-192 15-160 (160)
100 TIGR00705 SppA_67K signal pept 99.4 3.2E-12 6.9E-17 133.0 12.9 156 18-193 306-509 (584)
101 TIGR00706 SppA_dom signal pept 99.3 1.4E-11 2.9E-16 112.3 12.3 148 22-198 2-198 (207)
102 cd07021 Clp_protease_NfeD_like 99.3 7.5E-11 1.6E-15 104.7 12.9 140 23-195 2-171 (178)
103 cd07018 S49_SppA_67K_type Sign 99.2 6.2E-11 1.4E-15 109.2 9.6 143 35-198 25-216 (222)
104 cd07015 Clp_protease_NfeD Nodu 98.8 9.7E-08 2.1E-12 84.1 12.5 144 23-195 2-165 (172)
105 cd07013 S14_ClpP Caseinolytic 98.7 2.7E-07 5.8E-12 80.8 12.2 132 36-192 9-162 (162)
106 PRK00277 clpP ATP-dependent Cl 98.7 2.2E-07 4.7E-12 84.2 11.8 136 35-196 39-197 (200)
107 PRK12319 acetyl-CoA carboxylas 98.6 1.3E-05 2.8E-10 75.0 20.2 138 33-196 76-215 (256)
108 PRK12553 ATP-dependent Clp pro 98.5 1.4E-06 3E-11 79.3 12.9 137 35-196 43-203 (207)
109 KOG1683 Hydroxyacyl-CoA dehydr 98.5 2.8E-08 6.2E-13 95.3 0.6 175 15-195 58-240 (380)
110 cd07017 S14_ClpP_2 Caseinolyti 98.5 1.5E-06 3.2E-11 76.8 10.7 132 36-192 18-171 (171)
111 CHL00198 accA acetyl-CoA carbo 98.5 3.9E-05 8.5E-10 73.6 20.8 139 33-195 132-270 (322)
112 PLN03230 acetyl-coenzyme A car 98.4 3.9E-05 8.4E-10 75.5 20.8 136 34-195 200-337 (431)
113 PRK10949 protease 4; Provision 98.4 3.4E-06 7.4E-11 88.4 14.2 156 19-197 325-531 (618)
114 PF00574 CLP_protease: Clp pro 98.4 2.1E-06 4.6E-11 76.5 10.6 144 24-195 18-181 (182)
115 TIGR00513 accA acetyl-CoA carb 98.4 6.2E-05 1.3E-09 72.2 20.3 137 33-195 129-267 (316)
116 PRK05724 acetyl-CoA carboxylas 98.4 6.2E-05 1.3E-09 72.3 19.9 139 33-195 129-267 (319)
117 PRK14512 ATP-dependent Clp pro 98.4 5.6E-06 1.2E-10 74.8 11.9 137 36-195 32-188 (197)
118 CHL00028 clpP ATP-dependent Cl 98.3 9.4E-06 2E-10 73.4 13.1 137 36-196 39-197 (200)
119 PLN03229 acetyl-coenzyme A car 98.3 8E-05 1.7E-09 77.7 20.9 139 33-195 220-358 (762)
120 TIGR00493 clpP ATP-dependent C 98.3 2.2E-05 4.8E-10 70.6 13.3 136 36-194 35-190 (191)
121 TIGR03133 malonate_beta malona 98.1 0.00018 3.8E-09 67.9 16.6 157 22-205 61-226 (274)
122 PRK14514 ATP-dependent Clp pro 98.1 4.8E-05 1E-09 69.6 12.5 138 35-195 62-219 (221)
123 COG0616 SppA Periplasmic serin 98.1 2.9E-05 6.3E-10 75.3 11.4 134 40-197 81-264 (317)
124 PRK11778 putative inner membra 98.1 4.2E-05 9.2E-10 74.0 12.1 155 19-198 89-289 (330)
125 PRK14513 ATP-dependent Clp pro 98.0 8.7E-05 1.9E-09 67.0 12.4 139 35-198 35-195 (201)
126 PRK12551 ATP-dependent Clp pro 98.0 9.7E-05 2.1E-09 66.6 12.6 139 36-197 34-192 (196)
127 PRK07189 malonate decarboxylas 97.9 0.00029 6.3E-09 67.3 13.8 156 22-204 70-234 (301)
128 TIGR03134 malonate_gamma malon 97.8 0.0012 2.5E-08 61.3 16.5 163 19-205 30-199 (238)
129 CHL00174 accD acetyl-CoA carbo 97.6 0.0023 4.9E-08 61.0 15.2 148 22-199 135-283 (296)
130 COG0740 ClpP Protease subunit 97.6 0.00036 7.9E-09 62.5 8.6 144 25-198 30-195 (200)
131 PRK05654 acetyl-CoA carboxylas 97.5 0.005 1.1E-07 58.9 16.3 151 18-199 118-270 (292)
132 PF01972 SDH_sah: Serine dehyd 97.5 0.00063 1.4E-08 63.5 9.5 94 34-153 70-163 (285)
133 TIGR00515 accD acetyl-CoA carb 97.5 0.0054 1.2E-07 58.4 16.0 150 19-199 118-269 (285)
134 TIGR00705 SppA_67K signal pept 97.4 0.0012 2.5E-08 69.4 11.6 85 39-143 76-160 (584)
135 PF01039 Carboxyl_trans: Carbo 97.4 0.0034 7.4E-08 64.7 14.3 134 27-197 64-207 (493)
136 PF01343 Peptidase_S49: Peptid 97.4 0.00013 2.8E-09 63.3 3.3 94 105-198 3-143 (154)
137 TIGR01117 mmdA methylmalonyl-C 97.3 0.0062 1.4E-07 62.9 15.0 157 20-199 314-485 (512)
138 COG1030 NfeD Membrane-bound se 97.2 0.0088 1.9E-07 59.5 14.2 147 19-195 25-188 (436)
139 PRK12552 ATP-dependent Clp pro 97.2 0.0063 1.4E-07 55.8 12.1 139 36-196 49-215 (222)
140 TIGR01117 mmdA methylmalonyl-C 96.8 0.017 3.8E-07 59.6 13.1 136 25-197 86-230 (512)
141 PRK10949 protease 4; Provision 96.8 0.011 2.4E-07 62.3 11.5 85 39-143 95-179 (618)
142 PLN02820 3-methylcrotonyl-CoA 96.6 0.059 1.3E-06 56.3 15.3 140 25-197 133-281 (569)
143 COG0825 AccA Acetyl-CoA carbox 96.5 0.015 3.3E-07 54.6 9.3 86 101-195 181-266 (317)
144 COG4799 Acetyl-CoA carboxylase 96.0 0.058 1.3E-06 55.2 10.8 191 29-257 100-310 (526)
145 COG0777 AccD Acetyl-CoA carbox 95.8 0.24 5.3E-06 46.3 13.1 136 32-198 134-270 (294)
146 PLN02820 3-methylcrotonyl-CoA 94.8 0.7 1.5E-05 48.4 14.2 147 34-198 380-543 (569)
147 KOG0840 ATP-dependent Clp prot 94.6 0.32 6.9E-06 45.1 9.9 132 36-195 101-257 (275)
148 PF01039 Carboxyl_trans: Carbo 93.7 0.49 1.1E-05 48.8 10.4 159 19-199 292-468 (493)
149 PLN02157 3-hydroxyisobutyryl-C 93.0 0.15 3.2E-06 51.2 5.2 68 270-343 227-297 (401)
150 COG4799 Acetyl-CoA carboxylase 80.8 12 0.00027 38.6 9.9 119 25-161 328-447 (526)
151 KOG0540 3-Methylcrotonyl-CoA c 76.7 19 0.00042 36.3 9.5 153 21-198 349-510 (536)
152 TIGR00237 xseA exodeoxyribonuc 72.6 6.5 0.00014 39.9 5.4 81 37-139 168-248 (432)
153 PF02601 Exonuc_VII_L: Exonucl 70.3 8.5 0.00018 37.2 5.4 80 38-139 54-136 (319)
154 PF13607 Succ_CoA_lig: Succiny 65.7 18 0.00038 30.7 5.8 52 43-119 41-92 (138)
155 PF06833 MdcE: Malonate decarb 58.8 41 0.00089 31.1 7.2 153 33-205 40-197 (234)
156 COG3660 Predicted nucleoside-d 58.8 1.3E+02 0.0028 28.6 10.4 137 3-141 102-256 (329)
157 COG0074 SucD Succinyl-CoA synt 57.6 32 0.00069 32.7 6.4 51 46-120 190-240 (293)
158 PRK00286 xseA exodeoxyribonucl 54.0 19 0.00041 36.5 4.8 78 38-139 175-253 (438)
159 smart00250 PLEC Plectin repeat 53.3 11 0.00024 24.2 1.9 19 173-191 17-35 (38)
160 PTZ00187 succinyl-CoA syntheta 53.0 41 0.00089 32.7 6.6 53 44-120 212-264 (317)
161 PF00549 Ligase_CoA: CoA-ligas 48.8 29 0.00063 29.9 4.4 76 43-135 60-140 (153)
162 COG1570 XseA Exonuclease VII, 47.3 30 0.00064 35.1 4.7 79 39-139 176-254 (440)
163 PF00681 Plectin: Plectin repe 45.6 8.8 0.00019 25.7 0.5 19 173-191 17-35 (45)
164 TIGR00377 ant_ant_sig anti-ant 40.3 1E+02 0.0022 23.9 6.2 50 12-66 3-52 (108)
165 TIGR02717 AcCoA-syn-alpha acet 38.3 36 0.00079 34.6 3.9 83 42-150 189-271 (447)
166 PLN02522 ATP citrate (pro-S)-l 37.5 76 0.0016 33.7 6.1 52 44-120 210-262 (608)
167 COG4565 CitB Response regulato 37.0 1.4E+02 0.003 27.4 6.9 59 150-208 55-117 (224)
168 PF06744 DUF1215: Protein of u 36.1 2E+02 0.0044 23.5 7.5 26 334-360 53-78 (125)
169 TIGR02886 spore_II_AA anti-sig 33.6 2E+02 0.0042 22.3 6.8 50 15-69 2-51 (106)
170 PLN00125 Succinyl-CoA ligase [ 33.4 99 0.0021 29.8 5.8 13 108-120 233-245 (300)
171 PF06258 Mito_fiss_Elm1: Mitoc 30.8 5E+02 0.011 25.1 11.0 130 8-147 95-246 (311)
172 KOG1255 Succinyl-CoA synthetas 29.4 1.5E+02 0.0032 27.7 5.9 55 44-120 219-274 (329)
173 PRK13505 formate--tetrahydrofo 28.9 87 0.0019 32.8 4.8 76 54-133 322-397 (557)
174 PF01740 STAS: STAS domain; I 28.1 2.2E+02 0.0047 22.4 6.3 48 14-66 2-57 (117)
175 COG0528 PyrH Uridylate kinase 28.0 1.7E+02 0.0037 27.1 6.1 53 11-69 5-57 (238)
176 PF14842 FliG_N: FliG N-termin 27.0 56 0.0012 26.2 2.5 86 168-260 12-101 (108)
177 COG0793 Prc Periplasmic protea 25.3 79 0.0017 31.9 3.7 94 22-128 205-307 (406)
178 KOG3179 Predicted glutamine sy 25.0 1.4E+02 0.003 27.2 4.7 46 56-120 59-105 (245)
179 PF03464 eRF1_2: eRF1 domain 2 24.6 1.3E+02 0.0028 25.0 4.4 45 22-66 25-83 (133)
180 PRK06091 membrane protein FdrA 24.5 2.1E+02 0.0045 30.1 6.6 21 100-120 271-291 (555)
181 PRK14556 pyrH uridylate kinase 24.2 2.3E+02 0.0051 26.5 6.4 41 30-71 29-69 (249)
182 PF14024 DUF4240: Protein of u 23.8 3.3E+02 0.0072 22.5 6.7 80 250-333 6-85 (128)
183 PF12268 DUF3612: Protein of u 22.9 58 0.0013 27.9 1.9 26 56-81 79-104 (178)
184 PF13877 RPAP3_C: Potential Mo 21.6 1.7E+02 0.0037 22.5 4.3 42 246-287 45-86 (94)
No 1
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=7.6e-72 Score=549.26 Aligned_cols=360 Identities=59% Similarity=1.043 Sum_probs=325.4
Q ss_pred CCcEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHH
Q 016955 11 DNMVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEEC 90 (380)
Q Consensus 11 ~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 90 (380)
.+.|.++..+++++||||||+++|+||.+|+.+|.++|+.++.|+++++|||+|.|++||+|+|++.+......+.....
T Consensus 41 ~~~v~~e~~~~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~ 120 (407)
T PLN02851 41 QDQVLVEGRAKSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEEC 120 (407)
T ss_pred CCCeEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999998754322233445
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchHHHH
Q 016955 91 KECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHLGEY 170 (380)
Q Consensus 91 ~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~a~~ 170 (380)
..+++.++.+.+.|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+.+
T Consensus 121 ~~~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~~g~~ 200 (407)
T PLN02851 121 KLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGYLGEY 200 (407)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCHHHHH
Confidence 66778888999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred HhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCCCCH
Q 016955 171 LGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGHDTV 250 (380)
Q Consensus 171 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 250 (380)
|++||++++|+||+++||+|+++|+++++.+.+.+.++.+.+...+..++++|.....++.+.+..+.+.|++||+.+++
T Consensus 201 L~LTG~~i~a~eA~~~GLa~~~v~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~F~~~sv 280 (407)
T PLN02851 201 LALTGQKLNGVEMIACGLATHYCLNARLPLIEERLGKLLTDDPAVIEDSLAQYGDLVYPDKSSVLHKIETIDKCFGHDTV 280 (407)
T ss_pred HHHhCCcCCHHHHHHCCCceeecCHhhHHHHHHHHHhhccCCHHHHHHHHHHhccccCCCcccHHHHHHHHHHHhCCCCH
Confidence 99999999999999999999999999999999988887776667789999999765434445677779999999999999
Q ss_pred HHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhhhhhhc
Q 016955 251 EEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEGVRTRL 330 (380)
Q Consensus 251 ~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~egv~a~l 330 (380)
++|+++|+++.++...+||+++++.|.+.||+|+++|+++++++...++.++|+.|+++..+++....++||.|||||.|
T Consensus 281 ~~I~~~L~~~~~~~~~~wa~~~~~~l~~~SP~Sl~vt~~~~~~~~~~sl~e~l~~E~~l~~~~~~~~~~~DF~EGVRA~L 360 (407)
T PLN02851 281 EEIIEALENEAASSYDEWCKKALKKIKEASPLSLKVTLQSIREGRFQTLDQCLAREYRISLCGVSKWVSGDFCEGVRARL 360 (407)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCccchHHHHHHHHh
Confidence 99999999754433578999999999999999999999999999999999999999999999842124799999999999
Q ss_pred ccCCCCCCCCCCCcCCCCHHHHHhhccCCCCCCCCcccch
Q 016955 331 VEKSFAPKWDPPCLEQVTEEMVNAYFERISVDEPELELPN 370 (380)
Q Consensus 331 ~~k~r~P~w~~~~~~~v~~~~v~~~f~~~~~~~~~~~~~~ 370 (380)
+||+++|+|+|+++++|+++.|++||.|++.++++|++|.
T Consensus 361 IDKd~~P~W~p~sl~~V~~~~v~~~f~~~~~~~~~l~~~~ 400 (407)
T PLN02851 361 VDKDFAPKWDPPSLGEVSKDMVDCYFTPLDESESELELPT 400 (407)
T ss_pred cCCCCCCCCCCCChhhCCHHHHHHHhCCCCCCcccccCCc
Confidence 9999999999999999999999999999876545788875
No 2
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=2.3e-70 Score=539.06 Aligned_cols=369 Identities=56% Similarity=1.012 Sum_probs=319.6
Q ss_pred CCCCCCCcEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccC
Q 016955 6 DCNDADNMVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKG 85 (380)
Q Consensus 6 ~~~~~~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~ 85 (380)
.+.+....|.++++++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||+|.|++||+|+|+.++......+
T Consensus 31 ~~~~~~~~V~~e~~g~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~ 110 (401)
T PLN02157 31 TPEDLDYQVLVEGSGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRG 110 (401)
T ss_pred CCcCCCCceEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhcccc
Confidence 34444667999999999999999999999999999999999999999999999999999999999999999986532222
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCc
Q 016955 86 RVEECKECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPG 165 (380)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g 165 (380)
.......++...+.+...|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|
T Consensus 111 ~~~~~~~~~~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G 190 (401)
T PLN02157 111 SPDAIREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPG 190 (401)
T ss_pred chHHHHHHHHHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhh
Confidence 22223456666677888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhh
Q 016955 166 HLGEYLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCF 245 (380)
Q Consensus 166 ~~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f 245 (380)
..+++|++||++++|+||+++||||++||+++++.+.+.+.++.+.+...+....+.+.....+....+....+.|+.||
T Consensus 191 ~~a~~L~LTG~~i~A~eA~~~GLv~~vVp~~~l~~~~~~~~~i~~~~p~av~~~k~~~~~~~~~~~~~l~~~~~~i~~~f 270 (401)
T PLN02157 191 RLGEYLGLTGLKLSGAEMLACGLATHYIRSEEIPVMEEQLKKLLTDDPSVVESCLEKCAEVAHPEKTGVIRRIDLLEKCF 270 (401)
T ss_pred HHHHHHHHcCCcCCHHHHHHcCCceEEeCHhHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCcchhHHHHHHHHHHHh
Confidence 77999999999999999999999999999999987777777666655555666666554432233344555688999999
Q ss_pred CCCCHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhh
Q 016955 246 GHDTVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEG 325 (380)
Q Consensus 246 ~~~~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~eg 325 (380)
+.++++||+++|+++.+....+|++++++.|.+.||.|+++|.++++++...++.++|..|+++..+++....++||.||
T Consensus 271 ~~~d~~ei~~al~~~~~kr~~~wa~~~~~~l~~~sP~Sl~vt~~~~~~~~~~~l~e~~~~e~~~~~~~~~~~~~~DF~EG 350 (401)
T PLN02157 271 SHDTVEEIIDSLEIEAGRRKDTWCITTLRRLKESSPLSLKVALRSIREGRLQTLDQCLIREYRMSLQGLIGPMSGNFCEG 350 (401)
T ss_pred cCCCHHHHHHHHHhhhcccchHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCCchHHHH
Confidence 99999999999976433334689999999999999999999999999999999999999999999998421026899999
Q ss_pred hhhhcccCCCCCCCCCCCcCCCCHHHHHhhccCCCCCCCCcccchhhhh
Q 016955 326 VRTRLVEKSFAPKWDPPCLEQVTEEMVNAYFERISVDEPELELPNKLRK 374 (380)
Q Consensus 326 v~a~l~~k~r~P~w~~~~~~~v~~~~v~~~f~~~~~~~~~~~~~~~~~~ 374 (380)
|||.|+||+++|+|+|+++++|+++.|++||.|+.++.++|.+|.|+|.
T Consensus 351 VRA~LiDKd~~P~W~p~~l~~V~~~~v~~~f~~~~~~~~~l~~~~~~~~ 399 (401)
T PLN02157 351 VRARLIDKDEAPKWDPPSLEKVSEDMVDDYFCALTPTEPDLDLPVKLRE 399 (401)
T ss_pred HHHHHcCCCCCCCCCCCChhhCCHHHHHHHhCCCCCCccccccchhhhh
Confidence 9999999999999999999999999999999999744467999988885
No 3
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=100.00 E-value=2e-70 Score=537.87 Aligned_cols=362 Identities=47% Similarity=0.819 Sum_probs=315.2
Q ss_pred CCCCcEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHH
Q 016955 9 DADNMVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVE 88 (380)
Q Consensus 9 ~~~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~ 88 (380)
++...|.++++++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||+|.|++||+|+|++++......+...
T Consensus 6 ~~~~~v~~~~~~~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~ 85 (381)
T PLN02988 6 ASQSQVLVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWR 85 (381)
T ss_pred ccCCceEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchh
Confidence 34457889999999999999999999999999999999999999999999999999999999999999986432222222
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchHH
Q 016955 89 ECKECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHLG 168 (380)
Q Consensus 89 ~~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~a 168 (380)
....++...+.+...|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+
T Consensus 86 ~~~~~f~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~~~ 165 (381)
T PLN02988 86 LGANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFG 165 (381)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHHHH
Confidence 23344555666777899999999999999999999999999999999999999999999999999999999999999879
Q ss_pred HHHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCCC
Q 016955 169 EYLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGHD 248 (380)
Q Consensus 169 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 248 (380)
.+|+|||++++|+||+++||||++||+++++.+..++.++.+.+...+...++.|..........+..+...|++||+.+
T Consensus 166 ~~l~LTG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~ 245 (381)
T PLN02988 166 EYVGLTGARLDGAEMLACGLATHFVPSTRLTALEADLCRIGSNDPTFASTILDAYTQHPRLKPQSAYHRLDVIDRCFSRR 245 (381)
T ss_pred HHHHHcCCCCCHHHHHHcCCceEecCHhHHHHHHHHHHHhhccCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999998888888766655556777778776543222345666799999999999
Q ss_pred CHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhhhhh
Q 016955 249 TVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEGVRT 328 (380)
Q Consensus 249 ~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~egv~a 328 (380)
++++|+++|+++.++...+||+++++.|.+.||.|+++|+++++++...++.++|..|+++..+++....++||.|||||
T Consensus 246 ~~~~i~~~L~~~~~~~~~~wa~~~~~~l~~~sP~sl~vt~~~~~~~~~~sl~e~~~~e~~~~~~~~~~~~~~DF~EGVRA 325 (381)
T PLN02988 246 TVEEIISALEREATQEADGWISATIQALKKASPASLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGEISKDFVEGCRA 325 (381)
T ss_pred CHHHHHHHHHhhccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCchHHHhHHH
Confidence 99999999998543235799999999999999999999999999999999999999999999999421115999999999
Q ss_pred hcccCCCCCCCCCCCcCCCCHHHHHhhccCCCCCC--CCcccch
Q 016955 329 RLVEKSFAPKWDPPCLEQVTEEMVNAYFERISVDE--PELELPN 370 (380)
Q Consensus 329 ~l~~k~r~P~w~~~~~~~v~~~~v~~~f~~~~~~~--~~~~~~~ 370 (380)
.|+||+++|+|+|+++++|+++.|++||.|++.++ .+|.++-
T Consensus 326 ~LiDKd~~P~W~p~~l~~v~~~~v~~~f~~~~~~~~~~~l~~~~ 369 (381)
T PLN02988 326 ILVDKDKNPKWEPRRLEDMKDSMVEQYFERVEEEEEWDDLKLPP 369 (381)
T ss_pred HhcCCCCCCCCCCCChhhCCHHHHHHHhCCCCccccccccCCcc
Confidence 99999999999999999999999999999986532 2577764
No 4
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=4.4e-68 Score=523.14 Aligned_cols=362 Identities=46% Similarity=0.793 Sum_probs=319.8
Q ss_pred CCCCCCcEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCC
Q 016955 7 CNDADNMVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGR 86 (380)
Q Consensus 7 ~~~~~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~ 86 (380)
.++.+..|.++++++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.|++||+|+|++++......
T Consensus 6 ~~~~~~~v~~~~~~~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~-- 83 (379)
T PLN02874 6 QNPAEEVVLGEEKGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRES-- 83 (379)
T ss_pred CCCCCCceEEEEECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhccc--
Confidence 345677899999999999999999999999999999999999999999999999999999999999999987642211
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCch
Q 016955 87 VEECKECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGH 166 (380)
Q Consensus 87 ~~~~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~ 166 (380)
......++...+.++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.
T Consensus 84 ~~~~~~~~~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g~ 163 (379)
T PLN02874 84 DDSCLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGH 163 (379)
T ss_pred chHHHHHHHHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhHH
Confidence 11223344445567788999999999999999999999999999999999999999999999999999999999999986
Q ss_pred HHHHHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhC
Q 016955 167 LGEYLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFG 246 (380)
Q Consensus 167 ~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~ 246 (380)
.+.+|++||++++|+||+++|||+++||++++..+.+++.++.+.+...++.++++|.....+....+....+.|.+||+
T Consensus 164 ~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~ 243 (379)
T PLN02874 164 LGEYLALTGARLNGKEMVACGLATHFVPSEKLPELEKRLLNLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINECFS 243 (379)
T ss_pred HHHHHHHcCCcccHHHHHHcCCccEEeCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHhC
Confidence 69999999999999999999999999999998877778877777777889999999987655566677778999999999
Q ss_pred CCCHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhhh
Q 016955 247 HDTVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEGV 326 (380)
Q Consensus 247 ~~~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~egv 326 (380)
.+++.+|+++|++..++...+||.+++++|++.||.|++.+|++++++...++.++++.|+.....++....++||+||+
T Consensus 244 ~~~~~eii~al~~~~~~~~~~~A~~~a~~l~~~sP~al~~tk~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~D~~EGv 323 (379)
T PLN02874 244 KDTVEEIIKAFESEASKTGNEWIKETLKGLRRSSPTGLKITLRSIREGRKQSLAECLKKEFRLTMNILRSTVSDDVYEGI 323 (379)
T ss_pred CCCHHHHHHHHhhcccccccHHHHHHHHHHHhcChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCcCcchhhcc
Confidence 99999999999987666667999999999999999999999999999888899999999998888773212389999999
Q ss_pred hhhcccCCCCCCCCCCCcCCCCHHHHHhhccCCCCCCCCcccchh
Q 016955 327 RTRLVEKSFAPKWDPPCLEQVTEEMVNAYFERISVDEPELELPNK 371 (380)
Q Consensus 327 ~a~l~~k~r~P~w~~~~~~~v~~~~v~~~f~~~~~~~~~~~~~~~ 371 (380)
+||+++|+|.|+|+++++++|++++|+++|.|++.. ++|++|++
T Consensus 324 ~AflidK~r~P~w~~~~~~~v~~~~v~~~f~~~~~~-~~~~~~~~ 367 (379)
T PLN02874 324 RALVIDKDNAPKWNPSTLDEVTDEKVDLVFQPFKAR-EELQLPEE 367 (379)
T ss_pred ceEEEcCCCCCCCCCCChhhCCHHHHHHHhCCCCCc-cccCCCcc
Confidence 999866768999999999999999999999998643 56988853
No 5
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=8.8e-68 Score=493.75 Aligned_cols=360 Identities=48% Similarity=0.800 Sum_probs=335.9
Q ss_pred CCcEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCC-CccccccCchHHHHHhccCCHHH
Q 016955 11 DNMVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNG-RSFCAGGDVVTLYRLLSKGRVEE 89 (380)
Q Consensus 11 ~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~ 89 (380)
-..|.++..+....||||||+.+||||.+|+..+.-.|..|+.++.+++||+.|.| ++||+|+|+........++....
T Consensus 37 ~~~VL~e~~~~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~ 116 (401)
T KOG1684|consen 37 KDQVLVEGKGCARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPE 116 (401)
T ss_pred CCceEEecCCceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchH
Confidence 35899999999999999999999999999999999999999999999999999995 99999999998888777777888
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchHHH
Q 016955 90 CKECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHLGE 169 (380)
Q Consensus 90 ~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~a~ 169 (380)
...+++..|.+...|.++.||.||.++|..+|||++|++..-||||+|++.|+|||+.+|++|+.|++++|+|++|..+.
T Consensus 117 ~~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlpg~lg~ 196 (401)
T KOG1684|consen 117 VKKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLPGYLGL 196 (401)
T ss_pred HHHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCccceeehhhCccHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999997799
Q ss_pred HHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHH-HhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCCC
Q 016955 170 YLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLR-TLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGHD 248 (380)
Q Consensus 170 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 248 (380)
||.|||+++++.||+..||++++|++++++.++++|. .+...+.+.+++.|++|.....++...+....+.|++||+.+
T Consensus 197 YLgLTG~rl~GaD~~~~GlATHyv~S~~l~~Lee~L~~~l~~dp~~~I~~~l~~y~~~~~~~~~~~~~~~~~i~~~Fs~~ 276 (401)
T KOG1684|consen 197 YLGLTGQRLSGADALRCGLATHYVPSEKLPSLEERLLKNLNDDPQSVINETLEKYASPAKDESFSLSLKLDVINKCFSAN 276 (401)
T ss_pred hhhhccceecchHHHHhcchhhccchhhhhHHHHHHhhhcCCCcHHHHHHHHHHhcccCCCccccchhhHHHHHHhhccc
Confidence 9999999999999999999999999999999999998 444444578999999999998777777778999999999999
Q ss_pred CHHHHHHHHHhcc-cccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhhhh
Q 016955 249 TVEEIIGALESEV-AETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEGVR 327 (380)
Q Consensus 249 ~~~~i~~~L~~~~-~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~egv~ 327 (380)
+++|||++|++.. +....+||.+++++|.+.||.|+++|.++++++...++++++..|+++..+. ..++||.||+|
T Consensus 277 tVeeIie~lk~~q~~~~~~ewak~tlk~L~k~SPtSLkvT~r~i~egs~~tl~~~l~~Eyr~s~~~---~~~~DF~EGvR 353 (401)
T KOG1684|consen 277 TVEEIIEALKNYQQSADGSEWAKETLKTLKKMSPTSLKVTLRQIREGSKQTLDQCLTMEYRLSLRM---LMRGDFCEGVR 353 (401)
T ss_pred cHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcCCchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---hhccchhhhhh
Confidence 9999999996654 3557899999999999999999999999999999999999999999999998 66899999999
Q ss_pred hhcccCCCCCCCCCCCcCCCCHHHHHhhccCCCCCCCCcccchhhhh
Q 016955 328 TRLVEKSFAPKWDPPCLEQVTEEMVNAYFERISVDEPELELPNKLRK 374 (380)
Q Consensus 328 a~l~~k~r~P~w~~~~~~~v~~~~v~~~f~~~~~~~~~~~~~~~~~~ 374 (380)
|.|+||+++|+|+|.++++|++++|+.||.|++. ..+|-+|-..||
T Consensus 354 A~LIDKd~~PKW~p~~l~~V~e~~Vdn~F~~~p~-~~eLklp~~~r~ 399 (401)
T KOG1684|consen 354 AVLIDKDQNPKWDPASLADVTEDEVDNYFKPLPS-KSELKLPVWNRK 399 (401)
T ss_pred heeecCCcCCCCCCcchhhcCHHHHHHhccCCCC-cccccCchhccc
Confidence 9999999999999999999999999999999653 578887776665
No 6
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=100.00 E-value=2.5e-65 Score=497.83 Aligned_cols=338 Identities=43% Similarity=0.704 Sum_probs=300.4
Q ss_pred CcEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCC-CccccccCchHHHHHhccCCHHHH
Q 016955 12 NMVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNG-RSFCAGGDVVTLYRLLSKGRVEEC 90 (380)
Q Consensus 12 ~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~~ 90 (380)
+.|.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++............
T Consensus 3 ~~v~~~~~~~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (342)
T PRK05617 3 DEVLAEVEGGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAA 82 (342)
T ss_pred ceEEEEEECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhH
Confidence 3688999999999999999999999999999999999999999999999999999 999999999987643211111111
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchHHHH
Q 016955 91 KECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHLGEY 170 (380)
Q Consensus 91 ~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~a~~ 170 (380)
..++...+.++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+++
T Consensus 83 ~~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g~~a~~ 162 (342)
T PRK05617 83 DRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPGALGTY 162 (342)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhcccHHHHH
Confidence 23445556788889999999999999999999999999999999999999999999999999999999999998844999
Q ss_pred HhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccCh-hHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCCCC
Q 016955 171 LGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDF-SAMETFLAKHSEHVYPNENSILHRVETLNKCFGHDT 249 (380)
Q Consensus 171 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 249 (380)
|++||++++|+||+++|||++++|++++....+++.++..++. +.+..++.+|..+.. ..++....+.|++||+.++
T Consensus 163 llltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~ 240 (342)
T PRK05617 163 LALTGARISAADALYAGLADHFVPSADLPALLDALISLRWDSGADVVDAALAAFATPAP--ASELAAQRAWIDECFAGDT 240 (342)
T ss_pred HHHcCCCCCHHHHHHcCCcceecCHHHHHHHHHHHHhcCCccchhHHHHHHHHhccCCC--cchhHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999888766667777766554 457889999887633 2488889999999999999
Q ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhhhhhh
Q 016955 250 VEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEGVRTR 329 (380)
Q Consensus 250 ~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~egv~a~ 329 (380)
+++|+++|++. ..+||.+++++|++.||.|++.+|+++++....+++++++.|...+..+ +.++|++||+++|
T Consensus 241 ~~~~~~~l~~~----~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~~~~e~~~~~~~---~~~~d~~egv~af 313 (342)
T PRK05617 241 VEDIIAALEAD----GGEFAAKTADTLRSRSPTSLKVTLEQLRRARGLTLEECLRRELRLALAM---LRSPDFVEGVRAV 313 (342)
T ss_pred HHHHHHHHHhc----cHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH---HhCCchhhccceE
Confidence 99999999987 3589999999999999999999999999988889999999999999988 6799999999999
Q ss_pred cccCCCCCCCCCCCcCCCCHHHHHhhccC
Q 016955 330 LVEKSFAPKWDPPCLEQVTEEMVNAYFER 358 (380)
Q Consensus 330 l~~k~r~P~w~~~~~~~v~~~~v~~~f~~ 358 (380)
+.+|+|.|+|++++++||++++|++||+|
T Consensus 314 l~ek~r~p~~~~~~~~~~~~~~~~~~~~~ 342 (342)
T PRK05617 314 LIDKDRNPKWSPATLEDVTPEDVEAFFAP 342 (342)
T ss_pred EEcCCCCCCCCCCChHhCCHHHHHHhhCC
Confidence 84444799999999999999999999987
No 7
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.1e-53 Score=400.62 Aligned_cols=256 Identities=27% Similarity=0.415 Sum_probs=228.9
Q ss_pred CcEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCC-CccccccCchHHHHHhccCCHHHH
Q 016955 12 NMVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNG-RSFCAGGDVVTLYRLLSKGRVEEC 90 (380)
Q Consensus 12 ~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~~ 90 (380)
+.|.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++............
T Consensus 3 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (260)
T PRK05980 3 DTVLIEIRDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVAL 82 (260)
T ss_pred ceEEEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhH
Confidence 4689999999999999999999999999999999999999999999999999998 799999999987542211112223
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchH-HH
Q 016955 91 KECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHL-GE 169 (380)
Q Consensus 91 ~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~-a~ 169 (380)
..+......++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus 83 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~ 162 (260)
T PRK05980 83 RDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRAL 162 (260)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCHHHHH
Confidence 44555566788899999999999999999999999999999999999999999999999999999999999999998 99
Q ss_pred HHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCCCC
Q 016955 170 YLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGHDT 249 (380)
Q Consensus 170 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 249 (380)
+|+++|++++|+||+++||||+++|++++.. +
T Consensus 163 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~--~---------------------------------------------- 194 (260)
T PRK05980 163 ELLLTGDAFSAERALEIGLVNAVVPHEELLP--A---------------------------------------------- 194 (260)
T ss_pred HHHHcCCccCHHHHHHcCCCCcccCHHHHHH--H----------------------------------------------
Confidence 9999999999999999999999999876521 2
Q ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhhhhhh
Q 016955 250 VEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEGVRTR 329 (380)
Q Consensus 250 ~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~egv~a~ 329 (380)
|.+++++|++.||.+++.+|++++.....++.+++..|...+..+ +.++|+++|+++|
T Consensus 195 -------------------a~~~a~~la~~~p~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~---~~~~~~~e~~~af 252 (260)
T PRK05980 195 -------------------ARALARRIIRHSPVAVAAILTAVTRGLNLSIAEGLLIESEQFARM---AGSADLREGLAAW 252 (260)
T ss_pred -------------------HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---hcChhHHHHHHHH
Confidence 236688999999999999999999888889999999999998888 7799999999999
Q ss_pred cccCCCCCCC
Q 016955 330 LVEKSFAPKW 339 (380)
Q Consensus 330 l~~k~r~P~w 339 (380)
++ | |+|+|
T Consensus 253 ~~-k-r~p~~ 260 (260)
T PRK05980 253 IE-R-RRPAY 260 (260)
T ss_pred hc-c-CCCCC
Confidence 96 5 78988
No 8
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.1e-53 Score=398.15 Aligned_cols=254 Identities=25% Similarity=0.317 Sum_probs=228.1
Q ss_pred CCcEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCC-CccccccCchHHHHHhccCCHHH
Q 016955 11 DNMVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNG-RSFCAGGDVVTLYRLLSKGRVEE 89 (380)
Q Consensus 11 ~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~ 89 (380)
+..|.++++++|++||||||++ |++|.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++... +...
T Consensus 2 ~~~v~~~~~~~v~~itlnrp~~-Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~----~~~~ 76 (258)
T PRK09076 2 MIELDLEIDGHVAILTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADG----DKAV 76 (258)
T ss_pred ceEEEEEEECCEEEEEECCCCc-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhc----Chhh
Confidence 4568999999999999999986 999999999999999999999999999999998 789999999987532 1122
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchH-H
Q 016955 90 CKECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHL-G 168 (380)
Q Consensus 90 ~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~-a 168 (380)
...+...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 77 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a 156 (258)
T PRK09076 77 AREMARRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWA 156 (258)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHHH
Confidence 233445566788899999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred HHHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCCC
Q 016955 169 EYLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGHD 248 (380)
Q Consensus 169 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 248 (380)
++|++||++++|+||+++||||+++|++++. ++
T Consensus 157 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~--~~--------------------------------------------- 189 (258)
T PRK09076 157 KRMILCGERVDAATALRIGLVEEVVEKGEAR--EA--------------------------------------------- 189 (258)
T ss_pred HHHHHcCCcCCHHHHHHCCCCceecCchhHH--HH---------------------------------------------
Confidence 9999999999999999999999999987762 22
Q ss_pred CHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhhhhh
Q 016955 249 TVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEGVRT 328 (380)
Q Consensus 249 ~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~egv~a 328 (380)
+.+++++|+..||.+++.+|++++.....++.+.++.|...+..+ +.++|++||+++
T Consensus 190 --------------------a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~---~~~~~~~eg~~a 246 (258)
T PRK09076 190 --------------------ALALAQKVANQSPSAVAACKTLIQAARNGPRAAALALERELFVDL---FDTEDQREGVNA 246 (258)
T ss_pred --------------------HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---hcCchHHHHHHH
Confidence 236789999999999999999999887778999999999998888 679999999999
Q ss_pred hcccCCCCCCCCC
Q 016955 329 RLVEKSFAPKWDP 341 (380)
Q Consensus 329 ~l~~k~r~P~w~~ 341 (380)
|++ | |+|+|++
T Consensus 247 f~~-k-r~p~~~~ 257 (258)
T PRK09076 247 FLE-K-RAPQWKN 257 (258)
T ss_pred Hhc-C-CCCCCCC
Confidence 996 5 7999974
No 9
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.3e-53 Score=398.66 Aligned_cols=254 Identities=25% Similarity=0.374 Sum_probs=227.4
Q ss_pred CCcEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHH
Q 016955 11 DNMVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEEC 90 (380)
Q Consensus 11 ~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 90 (380)
++.+.++++++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||+|.|++||+|+|++++... .. .
T Consensus 3 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~----~~--~ 76 (257)
T PRK05862 3 YETILVETRGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADL----SF--M 76 (257)
T ss_pred CceEEEEeeCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhcc----ch--h
Confidence 45789999999999999999999999999999999999999999999999999999999999999987532 11 1
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchH-HH
Q 016955 91 KECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHL-GE 169 (380)
Q Consensus 91 ~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~-a~ 169 (380)
..+...+..++..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +.
T Consensus 77 ~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~ 156 (257)
T PRK05862 77 DVYKGDYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAM 156 (257)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHHH
Confidence 11223344567789999999999999999999999999999999999999999999999999999999999999998 99
Q ss_pred HHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCCCC
Q 016955 170 YLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGHDT 249 (380)
Q Consensus 170 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 249 (380)
+|++||++++|+||+++||||+++|++++. .+
T Consensus 157 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~--~~---------------------------------------------- 188 (257)
T PRK05862 157 DLCLTGRMMDAAEAERAGLVSRVVPADKLL--DE---------------------------------------------- 188 (257)
T ss_pred HHHHhCCccCHHHHHHcCCCCEeeCHhHHH--HH----------------------------------------------
Confidence 999999999999999999999999987662 22
Q ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhhhhhh
Q 016955 250 VEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEGVRTR 329 (380)
Q Consensus 250 ~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~egv~a~ 329 (380)
|.+++++|++.+|.+++.+|++++.....++.++++.|...+..+ +.++|+++|+++|
T Consensus 189 -------------------a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~---~~s~~~~e~i~af 246 (257)
T PRK05862 189 -------------------ALAAATTIASFSLPAVMMAKEAVNRAYETTLAEGLLFERRLFHSL---FATEDQKEGMAAF 246 (257)
T ss_pred -------------------HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---hcChhHHHHHHHH
Confidence 236688999999999999999999888889999999999998888 6799999999999
Q ss_pred cccCCCCCCCCCC
Q 016955 330 LVEKSFAPKWDPP 342 (380)
Q Consensus 330 l~~k~r~P~w~~~ 342 (380)
++ | |+|.|+++
T Consensus 247 ~~-k-r~p~~~~~ 257 (257)
T PRK05862 247 VE-K-RKPVFKHR 257 (257)
T ss_pred hc-c-CCCCCCCC
Confidence 96 5 79999763
No 10
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.8e-53 Score=401.37 Aligned_cols=260 Identities=20% Similarity=0.280 Sum_probs=230.3
Q ss_pred CCCcEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhc------
Q 016955 10 ADNMVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLS------ 83 (380)
Q Consensus 10 ~~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~------ 83 (380)
.++.+.++++++|++||||||+++|++|.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++.....
T Consensus 4 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~ 83 (272)
T PRK06142 4 TYESFTVELADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDG 83 (272)
T ss_pred CcceEEEEecCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhcccccccc
Confidence 34679999999999999999999999999999999999999999999999999999999999999998754210
Q ss_pred -cCCHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhh
Q 016955 84 -KGRVEECKECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSH 162 (380)
Q Consensus 84 -~~~~~~~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r 162 (380)
.........+...+.+++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~ 163 (272)
T PRK06142 84 LARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRLPR 163 (272)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHHHHHH
Confidence 0011223334455677888999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchH-HHHHhhcCCCcCHHHHHHcCCcccccCC-CChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHH
Q 016955 163 LPGHL-GEYLGLTGGRLSGEELLACGFATHYIPS-ARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVET 240 (380)
Q Consensus 163 ~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~-~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (380)
++|.. +++|+++|++++|+||+++||||+++++ +++..
T Consensus 164 ~~G~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~---------------------------------------- 203 (272)
T PRK06142 164 IIGDGHLRELALTGRDIDAAEAEKIGLVNRVYDDADALLA---------------------------------------- 203 (272)
T ss_pred HhCHHHHHHHHHhCCCcCHHHHHHcCCccEecCCHHHHHH----------------------------------------
Confidence 99999 9999999999999999999999999986 55521
Q ss_pred HhhhhCCCCHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCC
Q 016955 241 LNKCFGHDTVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISN 320 (380)
Q Consensus 241 i~~~f~~~~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~ 320 (380)
.+.+++++|++.||.+++.+|+++++....++.++++.|...+..+ +.++
T Consensus 204 ---------------------------~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~l~~~~~~~~~~~~~~---~~~~ 253 (272)
T PRK06142 204 ---------------------------AAHATAREIAAKSPLAVRGTKEVLDYMRDHRVADGLRYVATWNAAM---LPSK 253 (272)
T ss_pred ---------------------------HHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH---hcCc
Confidence 1236688999999999999999999888888999999999988888 7799
Q ss_pred cHHhhhhhhcccCCCCCCCCC
Q 016955 321 DFCEGVRTRLVEKSFAPKWDP 341 (380)
Q Consensus 321 d~~egv~a~l~~k~r~P~w~~ 341 (380)
|++||+++|++ | |.|+|++
T Consensus 254 d~~egv~af~~-k-r~p~~~~ 272 (272)
T PRK06142 254 DLTEAIAAHME-K-RPPEFTG 272 (272)
T ss_pred cHHHHHHHHhc-C-CCCCCCC
Confidence 99999999996 5 7999963
No 11
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=100.00 E-value=5.4e-53 Score=397.86 Aligned_cols=257 Identities=25% Similarity=0.354 Sum_probs=231.3
Q ss_pred CCCcEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCC-CccccccCchHHHHHhccCCHH
Q 016955 10 ADNMVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNG-RSFCAGGDVVTLYRLLSKGRVE 88 (380)
Q Consensus 10 ~~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g-~~F~~G~Dl~~~~~~~~~~~~~ 88 (380)
.++.+.++++++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++... ...
T Consensus 2 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~----~~~ 77 (260)
T PRK05809 2 ELKNVILEKEGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDL----NEE 77 (260)
T ss_pred CcceEEEEEeCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhcc----ChH
Confidence 467799999999999999999999999999999999999999999999999999999 999999999987542 112
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchH-
Q 016955 89 ECKECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHL- 167 (380)
Q Consensus 89 ~~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~- 167 (380)
....+......++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+.|++++|++++|..
T Consensus 78 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~ 157 (260)
T PRK05809 78 EGRKFGLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGK 157 (260)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHH
Confidence 2223344456788899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCC
Q 016955 168 GEYLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGH 247 (380)
Q Consensus 168 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 247 (380)
+++|+++|++++|+||+++||||+++|++++.
T Consensus 158 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~------------------------------------------------ 189 (260)
T PRK05809 158 AKELIYTGDMINAEEALRIGLVNKVVEPEKLM------------------------------------------------ 189 (260)
T ss_pred HHHHHHhCCCCCHHHHHHcCCCCcccChHHHH------------------------------------------------
Confidence 99999999999999999999999999987652
Q ss_pred CCHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhhhh
Q 016955 248 DTVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEGVR 327 (380)
Q Consensus 248 ~~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~egv~ 327 (380)
+.|.+++++|+..||.+++.+|++++.....++.++++.|...+..+ +.++|++||++
T Consensus 190 -------------------~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~---~~~~~~~egi~ 247 (260)
T PRK05809 190 -------------------EEAKALANKIAANAPIAVKLCKDAINRGMQVDIDTAVAIEAEDFGEC---FSTEDQTEGMT 247 (260)
T ss_pred -------------------HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---hcCHHHHHHHH
Confidence 22346789999999999999999999988889999999999999888 77999999999
Q ss_pred hhcccCCCCCCCCCC
Q 016955 328 TRLVEKSFAPKWDPP 342 (380)
Q Consensus 328 a~l~~k~r~P~w~~~ 342 (380)
+|++ | |.|+|..+
T Consensus 248 af~~-~-r~p~~~~~ 260 (260)
T PRK05809 248 AFVE-K-REKNFKNK 260 (260)
T ss_pred HHhc-C-CCCCCCCC
Confidence 9996 5 79999753
No 12
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.3e-53 Score=398.66 Aligned_cols=266 Identities=21% Similarity=0.287 Sum_probs=235.7
Q ss_pred CCCCCCCCCCcEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCC-CccccccCchHHHHH
Q 016955 3 SLNDCNDADNMVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNG-RSFCAGGDVVTLYRL 81 (380)
Q Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g-~~F~~G~Dl~~~~~~ 81 (380)
+|+.-+...+.|.++++++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++.+...
T Consensus 2 ~~~~~~~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~ 81 (269)
T PRK06127 2 TMSSISSPTGKLLAEKTGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEES 81 (269)
T ss_pred CccccCCCCCceEEEEECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhc
Confidence 4555555667799999999999999999999999999999999999999999999999999998 799999999987542
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHh
Q 016955 82 LSKGRVEECKECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLS 161 (380)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~ 161 (380)
. ........+......++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+
T Consensus 82 ~--~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~ 159 (269)
T PRK06127 82 R--SDAEAVAAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLV 159 (269)
T ss_pred c--cchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHH
Confidence 1 11222334445566788899999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCchH-HHHHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHH
Q 016955 162 HLPGHL-GEYLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVET 240 (380)
Q Consensus 162 r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (380)
+++|.. +++|++||++++|+||+++||||++||++++.. +
T Consensus 160 ~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~--~------------------------------------- 200 (269)
T PRK06127 160 DLVGPSAAKDLFYTARRFDAAEALRIGLVHRVTAADDLET--A------------------------------------- 200 (269)
T ss_pred HHhCHHHHHHHHHcCCCCCHHHHHHcCCCCEeeCHHHHHH--H-------------------------------------
Confidence 999998 999999999999999999999999999876632 2
Q ss_pred HhhhhCCCCHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCC
Q 016955 241 LNKCFGHDTVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISN 320 (380)
Q Consensus 241 i~~~f~~~~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~ 320 (380)
+.+++++|+..||.+++.+|++++.....++.+.++.|...+..+ +.++
T Consensus 201 ----------------------------a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~---~~~~ 249 (269)
T PRK06127 201 ----------------------------LADYAATIAGNAPLTLRAAKRAIAELLKDEPERDMAACQALVAAC---FDSE 249 (269)
T ss_pred ----------------------------HHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH---hcCh
Confidence 236689999999999999999999888888999999999988888 6799
Q ss_pred cHHhhhhhhcccCCCCCCCCCC
Q 016955 321 DFCEGVRTRLVEKSFAPKWDPP 342 (380)
Q Consensus 321 d~~egv~a~l~~k~r~P~w~~~ 342 (380)
|++||+++|++ | |.|+|+++
T Consensus 250 d~~e~~~af~e-k-r~p~~~~~ 269 (269)
T PRK06127 250 DYREGRAAFME-K-RKPVFKGR 269 (269)
T ss_pred HHHHHHHHHhc-C-CCCCCCCC
Confidence 99999999996 5 78999763
No 13
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=100.00 E-value=4.4e-53 Score=397.24 Aligned_cols=252 Identities=25% Similarity=0.393 Sum_probs=226.9
Q ss_pred CcEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHH
Q 016955 12 NMVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECK 91 (380)
Q Consensus 12 ~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~ 91 (380)
..|.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++... +. ..
T Consensus 2 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~----~~--~~ 75 (255)
T PRK09674 2 SELLVSRQQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEK----DL--AA 75 (255)
T ss_pred ceEEEEeECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhcc----ch--hh
Confidence 4678899999999999999999999999999999999999999999999999999999999999987532 11 11
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchH-HHH
Q 016955 92 ECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHL-GEY 170 (380)
Q Consensus 92 ~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~-a~~ 170 (380)
.+......++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++
T Consensus 76 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~ 155 (255)
T PRK09674 76 TLNDPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQ 155 (255)
T ss_pred hHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHH
Confidence 1223345577889999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred HhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCCCCH
Q 016955 171 LGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGHDTV 250 (380)
Q Consensus 171 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 250 (380)
|+++|++++|+||+++||||+++|++++. .
T Consensus 156 l~l~g~~~~a~eA~~~Glv~~vv~~~~~~--~------------------------------------------------ 185 (255)
T PRK09674 156 MVLTGESITAQQAQQAGLVSEVFPPELTL--E------------------------------------------------ 185 (255)
T ss_pred HHHcCCccCHHHHHHcCCCcEecChHHHH--H------------------------------------------------
Confidence 99999999999999999999999987762 2
Q ss_pred HHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhhhhhhc
Q 016955 251 EEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEGVRTRL 330 (380)
Q Consensus 251 ~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~egv~a~l 330 (380)
.|.+++++|+..||.+++.+|++++.....++.++++.|...+..+ +.++|+++|+++|+
T Consensus 186 -----------------~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~---~~~~~~~e~i~af~ 245 (255)
T PRK09674 186 -----------------RALQLASKIARHSPLALRAAKQALRQSQEVDLQAGLAQERQLFTLL---AATEDRHEGISAFL 245 (255)
T ss_pred -----------------HHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH---hcCHHHHHHHHHHh
Confidence 2336789999999999999999999888889999999999998888 77999999999999
Q ss_pred ccCCCCCCCCC
Q 016955 331 VEKSFAPKWDP 341 (380)
Q Consensus 331 ~~k~r~P~w~~ 341 (380)
+ | |+|+|.+
T Consensus 246 ~-k-r~p~~~~ 254 (255)
T PRK09674 246 E-K-RTPDFKG 254 (255)
T ss_pred c-c-CCCCCCC
Confidence 6 5 7999975
No 14
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.3e-53 Score=396.01 Aligned_cols=252 Identities=25% Similarity=0.304 Sum_probs=225.5
Q ss_pred CcEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHH
Q 016955 12 NMVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECK 91 (380)
Q Consensus 12 ~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~ 91 (380)
+.|.++++++|++||||||++.|+||.+|+.+|.++++.++ +++++|||||.|++||+|+|++++... ......
T Consensus 2 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~----~~~~~~ 75 (255)
T PRK08150 2 SLVSYELDGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRER----DAGEGM 75 (255)
T ss_pred ceEEEEeeCCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhc----cchhHH
Confidence 46889999999999999999999999999999999999987 789999999999999999999987542 111122
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchH-HHH
Q 016955 92 ECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHL-GEY 170 (380)
Q Consensus 92 ~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~-a~~ 170 (380)
.+...++.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++
T Consensus 76 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~ 155 (255)
T PRK08150 76 HHSRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTD 155 (255)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHH
Confidence 3345566788889999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred HhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCCCCH
Q 016955 171 LGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGHDTV 250 (380)
Q Consensus 171 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 250 (380)
|++||++++|+||+++||||++||++++. .++
T Consensus 156 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~--~~a---------------------------------------------- 187 (255)
T PRK08150 156 MMLTGRVYDAQEGERLGLAQYLVPAGEAL--DKA---------------------------------------------- 187 (255)
T ss_pred HHHcCCcCCHHHHHHcCCccEeeCchHHH--HHH----------------------------------------------
Confidence 99999999999999999999999988762 222
Q ss_pred HHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhhhhhhc
Q 016955 251 EEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEGVRTRL 330 (380)
Q Consensus 251 ~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~egv~a~l 330 (380)
.+++++|++.||.+++.+|++++.....+++++++.|...+..+ +.++|++||+++|+
T Consensus 188 -------------------~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~---~~s~d~~eg~~af~ 245 (255)
T PRK08150 188 -------------------MELARRIAQNAPLTNFAVLNALPRIADMSADDGLFVESLMAAVA---QSAPEAKERLRAFL 245 (255)
T ss_pred -------------------HHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH---hcCHHHHHHHHHHh
Confidence 36789999999999999999999887788999999998887777 67999999999999
Q ss_pred ccCCCCCCCCC
Q 016955 331 VEKSFAPKWDP 341 (380)
Q Consensus 331 ~~k~r~P~w~~ 341 (380)
+ | |.|+|++
T Consensus 246 ~-k-r~p~~~~ 254 (255)
T PRK08150 246 E-K-KAAKVKP 254 (255)
T ss_pred c-c-CCCCCCC
Confidence 6 5 7999975
No 15
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.8e-53 Score=397.37 Aligned_cols=260 Identities=22% Similarity=0.306 Sum_probs=225.8
Q ss_pred CCCcEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHH
Q 016955 10 ADNMVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEE 89 (380)
Q Consensus 10 ~~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 89 (380)
.++.+.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++...........
T Consensus 3 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 82 (263)
T PRK07799 3 GGPHALVEQRGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKD 82 (263)
T ss_pred CCceEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhh
Confidence 34679999999999999999999999999999999999999999999999999999999999999998764311101000
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchH-H
Q 016955 90 CKECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHL-G 168 (380)
Q Consensus 90 ~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~-a 168 (380)
.......+..+ ..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 83 ~~~~~~~~~~~-~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 161 (263)
T PRK07799 83 GSYDPSRIDAL-LKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTVA 161 (263)
T ss_pred hhhhhhHHHHH-HHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHHH
Confidence 00001112223 347899999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCCC
Q 016955 169 EYLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGHD 248 (380)
Q Consensus 169 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 248 (380)
++|++||++++|+||+++||||++||++++. .++
T Consensus 162 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~--~~a-------------------------------------------- 195 (263)
T PRK07799 162 CDLLLTGRHITAAEAKEIGLIGHVVPDGQAL--DKA-------------------------------------------- 195 (263)
T ss_pred HHHHHcCCCCCHHHHHHcCCccEecCcchHH--HHH--------------------------------------------
Confidence 9999999999999999999999999998762 232
Q ss_pred CHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhhhhh
Q 016955 249 TVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEGVRT 328 (380)
Q Consensus 249 ~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~egv~a 328 (380)
.+++++|++.||.+++.+|++++.....++.++++.|...+..+ +.++|+++|+++
T Consensus 196 ---------------------~~~a~~~~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~---~~~~~~~egi~a 251 (263)
T PRK07799 196 ---------------------LELAELINANGPLAVQAILRTIRETEGMHENEAFKIDTKIGIPV---FLSEDAKEGPRA 251 (263)
T ss_pred ---------------------HHHHHHHHhcChHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH---hcCccHHHHHHH
Confidence 26689999999999999999999888888999999999998888 779999999999
Q ss_pred hcccCCCCCCCCCC
Q 016955 329 RLVEKSFAPKWDPP 342 (380)
Q Consensus 329 ~l~~k~r~P~w~~~ 342 (380)
|++ | |.|+|..+
T Consensus 252 f~~-~-r~p~~~~~ 263 (263)
T PRK07799 252 FAE-K-RAPNFQGR 263 (263)
T ss_pred HHc-c-CCCCCCCC
Confidence 996 5 79999754
No 16
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-52 Score=396.26 Aligned_cols=259 Identities=26% Similarity=0.381 Sum_probs=227.1
Q ss_pred CCCcEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHH
Q 016955 10 ADNMVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEE 89 (380)
Q Consensus 10 ~~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 89 (380)
+++.|.++++++|++||||||+++|++|.+|+.+|.++++.++ |+++++|||+|.|++||+|+|++++...........
T Consensus 2 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 80 (262)
T PRK08140 2 MYETILLAIEAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDL 80 (262)
T ss_pred CCceEEEEeECCEEEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccchhh
Confidence 3567899999999999999999999999999999999999999 999999999999999999999998753210111111
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchH-H
Q 016955 90 CKECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHL-G 168 (380)
Q Consensus 90 ~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~-a 168 (380)
...+...+..++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. +
T Consensus 81 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a 160 (262)
T PRK08140 81 GESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARA 160 (262)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCHHHH
Confidence 111222234577889999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred HHHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCCC
Q 016955 169 EYLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGHD 248 (380)
Q Consensus 169 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 248 (380)
++|+++|++++|+||+++||||++||++++. .+
T Consensus 161 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~--~~--------------------------------------------- 193 (262)
T PRK08140 161 LGLALLGEKLSAEQAEQWGLIWRVVDDAALA--DE--------------------------------------------- 193 (262)
T ss_pred HHHHHcCCCcCHHHHHHcCCccEeeChHHHH--HH---------------------------------------------
Confidence 9999999999999999999999999987763 22
Q ss_pred CHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhhhhh
Q 016955 249 TVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEGVRT 328 (380)
Q Consensus 249 ~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~egv~a 328 (380)
|.+++++|++.||.+++.+|++++.....++.++++.|...+..+ +.++|++||+++
T Consensus 194 --------------------a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~---~~~~~~~e~~~a 250 (262)
T PRK08140 194 --------------------AQQLAAHLATQPTRGLALIKQAMNASATNTLDAQLDLERDLQREA---GRSADYAEGVSA 250 (262)
T ss_pred --------------------HHHHHHHHHhCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHH---hcChhHHHHHHH
Confidence 236789999999999999999999888889999999999988887 679999999999
Q ss_pred hcccCCCCCCCCC
Q 016955 329 RLVEKSFAPKWDP 341 (380)
Q Consensus 329 ~l~~k~r~P~w~~ 341 (380)
|++ | |+|.|.+
T Consensus 251 f~~-k-r~p~~~~ 261 (262)
T PRK08140 251 FLE-K-RAPRFTG 261 (262)
T ss_pred Hhc-C-CCCCCCC
Confidence 996 5 7899975
No 17
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=100.00 E-value=1.1e-52 Score=398.40 Aligned_cols=258 Identities=26% Similarity=0.357 Sum_probs=223.4
Q ss_pred CCCcEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHH
Q 016955 10 ADNMVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEE 89 (380)
Q Consensus 10 ~~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 89 (380)
.++.|.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|.|++++...........
T Consensus 6 ~~~~i~~~~~~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 85 (275)
T PRK09120 6 RWDTVKVEVEDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEIL 85 (275)
T ss_pred ccccEEEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999998754211111111
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchH-H
Q 016955 90 CKECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHL-G 168 (380)
Q Consensus 90 ~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~-a 168 (380)
...+.+..+.++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. +
T Consensus 86 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a 165 (275)
T PRK09120 86 QERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRDA 165 (275)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCHHHH
Confidence 223334456678889999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCCC
Q 016955 169 EYLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGHD 248 (380)
Q Consensus 169 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 248 (380)
++|++||++++|+||+++|||+++||++++..
T Consensus 166 ~~llltg~~~~A~eA~~~Glv~~vv~~~~l~~------------------------------------------------ 197 (275)
T PRK09120 166 LYYIMTGETFTGRKAAEMGLVNESVPLAQLRA------------------------------------------------ 197 (275)
T ss_pred HHHHhcCCccCHHHHHHcCCcceecCHHHHHH------------------------------------------------
Confidence 99999999999999999999999999887632
Q ss_pred CHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHH--HHHHhhhCCCC-cHHhh
Q 016955 249 TVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRM--SMRMISRQISN-DFCEG 325 (380)
Q Consensus 249 ~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~--~~~~~~~~~~~-d~~eg 325 (380)
.+.+++++|+..||.+++.+|++++.....++.+.++.|... ...+ +.++ |++||
T Consensus 198 -------------------~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~d~~eg 255 (275)
T PRK09120 198 -------------------RTRELAAKLLEKNPVVLRAAKDGFKRVRELTWDQAEDYLYAKLEQANS---LDPEGGREEG 255 (275)
T ss_pred -------------------HHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh---hCCHHHHHHH
Confidence 223678999999999999999999998888899998887643 3334 5677 89999
Q ss_pred hhhhcccCCCCC
Q 016955 326 VRTRLVEKSFAP 337 (380)
Q Consensus 326 v~a~l~~k~r~P 337 (380)
+++|++++.++|
T Consensus 256 ~~afl~kr~~~~ 267 (275)
T PRK09120 256 LKQFLDDKSYKP 267 (275)
T ss_pred HHHHHhcccCCc
Confidence 999998554344
No 18
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=100.00 E-value=9.4e-53 Score=399.11 Aligned_cols=259 Identities=23% Similarity=0.333 Sum_probs=227.1
Q ss_pred CCcEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhcc---CC-
Q 016955 11 DNMVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSK---GR- 86 (380)
Q Consensus 11 ~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~---~~- 86 (380)
...+..+++++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++...... .+
T Consensus 7 ~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~ 86 (275)
T PLN02664 7 LEIIQKSPNSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDR 86 (275)
T ss_pred eEEEEecCCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccc
Confidence 34455667899999999999999999999999999999999999999999999999999999999987542110 01
Q ss_pred ---HHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhc
Q 016955 87 ---VEECKECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHL 163 (380)
Q Consensus 87 ---~~~~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~ 163 (380)
......+...++.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+.|++++|+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ 166 (275)
T PLN02664 87 GRSGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSI 166 (275)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHH
Confidence 12233344555678888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchH-HHHHhhcCCCcCHHHHHHcCCcccccCC-CChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHH
Q 016955 164 PGHL-GEYLGLTGGRLSGEELLACGFATHYIPS-ARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETL 241 (380)
Q Consensus 164 ~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~-~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 241 (380)
+|.. +++|++||++++|+||+++||||++||+ +++. +
T Consensus 167 vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~---~-------------------------------------- 205 (275)
T PLN02664 167 VGYGNAMELALTGRRFSGSEAKELGLVSRVFGSKEDLD---E-------------------------------------- 205 (275)
T ss_pred hCHHHHHHHHHhCCCCCHHHHHHcCCCceeeCChhHHH---H--------------------------------------
Confidence 9999 9999999999999999999999999985 5542 1
Q ss_pred hhhhCCCCHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCc
Q 016955 242 NKCFGHDTVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISND 321 (380)
Q Consensus 242 ~~~f~~~~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d 321 (380)
.+.+++++|+..||.+++.+|++++.....++.++++.|...+..+ +.++|
T Consensus 206 --------------------------~~~~~a~~ia~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~---~~~~d 256 (275)
T PLN02664 206 --------------------------GVRLIAEGIAAKSPLAVTGTKAVLLRSRELSVEQGLDYVATWNSAM---LVSDD 256 (275)
T ss_pred --------------------------HHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh---ccChh
Confidence 2236789999999999999999999888888999999998888777 67999
Q ss_pred HHhhhhhhcccCCCCCCCCC
Q 016955 322 FCEGVRTRLVEKSFAPKWDP 341 (380)
Q Consensus 322 ~~egv~a~l~~k~r~P~w~~ 341 (380)
++||+++|++ | |+|.|++
T Consensus 257 ~~eg~~af~e-k-r~p~~~~ 274 (275)
T PLN02664 257 LNEAVSAQIQ-K-RKPVFAK 274 (275)
T ss_pred HHHHHHHHhc-c-CCCCCCC
Confidence 9999999996 5 7999975
No 19
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-52 Score=395.40 Aligned_cols=256 Identities=23% Similarity=0.349 Sum_probs=230.3
Q ss_pred CCcEEEEE-cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCC-CccccccCchHHHHHhccCCHH
Q 016955 11 DNMVLVEE-GASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNG-RSFCAGGDVVTLYRLLSKGRVE 88 (380)
Q Consensus 11 ~~~v~~~~-~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g-~~F~~G~Dl~~~~~~~~~~~~~ 88 (380)
.+.|.+++ +++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++... ...
T Consensus 2 ~~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~----~~~ 77 (260)
T PRK07657 2 LQNISVDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGM----NEE 77 (260)
T ss_pred CceEEEEEccCCEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcC----Chh
Confidence 35788886 789999999999999999999999999999999999999999999999 599999999987532 122
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchH-
Q 016955 89 ECKECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHL- 167 (380)
Q Consensus 89 ~~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~- 167 (380)
....+...++.++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 78 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~ 157 (260)
T PRK07657 78 QVRHAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGR 157 (260)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHHH
Confidence 2344555667788899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCC
Q 016955 168 GEYLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGH 247 (380)
Q Consensus 168 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 247 (380)
+++|+++|++++|+||+++||||+++|++++.. +
T Consensus 158 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~--~-------------------------------------------- 191 (260)
T PRK07657 158 AKELIYTGRRISAQEAKEIGLVEFVVPAHLLEE--K-------------------------------------------- 191 (260)
T ss_pred HHHHHHhCCCCCHHHHHHcCCCCeecCHHHHHH--H--------------------------------------------
Confidence 999999999999999999999999999877632 2
Q ss_pred CCHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhhhh
Q 016955 248 DTVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEGVR 327 (380)
Q Consensus 248 ~~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~egv~ 327 (380)
|.+++++|+..||.+++.+|++++.....++.+++..|...+..+ +.++|++||++
T Consensus 192 ---------------------a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~---~~~~~~~e~~~ 247 (260)
T PRK07657 192 ---------------------AIEIAEKIASNGPIAVRQAKEAISNGIQVDLHTGLQIEKQAYEGT---IPTKDRLEGLQ 247 (260)
T ss_pred ---------------------HHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH---hcCHhHHHHHH
Confidence 236689999999999999999999888888999999999988888 77999999999
Q ss_pred hhcccCCCCCCCCCC
Q 016955 328 TRLVEKSFAPKWDPP 342 (380)
Q Consensus 328 a~l~~k~r~P~w~~~ 342 (380)
+|++ | |.|+|+.+
T Consensus 248 af~~-~-r~~~~~~~ 260 (260)
T PRK07657 248 AFKE-K-RKPMYKGE 260 (260)
T ss_pred HHhc-C-CCCCCCCC
Confidence 9996 5 79999753
No 20
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.6e-52 Score=397.91 Aligned_cols=257 Identities=24% Similarity=0.303 Sum_probs=229.0
Q ss_pred cEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHH
Q 016955 13 MVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKE 92 (380)
Q Consensus 13 ~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~ 92 (380)
.+.++++++|++|+||||++.|+++.+|+.+|.++++.++.|+++++|||||.|++||+|+|+.++.......+......
T Consensus 18 ~~~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~ 97 (277)
T PRK08258 18 HFLWEVDDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLA 97 (277)
T ss_pred ceEEEEECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999998743211112222334
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccC-CCchhHHHhhcCchH-HHH
Q 016955 93 CFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHP-DAGASYYLSHLPGHL-GEY 170 (380)
Q Consensus 93 ~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p-~~g~~~~L~r~~g~~-a~~ 170 (380)
+...+..++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| ++|++++|++++|.. +++
T Consensus 98 ~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a~~ 177 (277)
T PRK08258 98 FTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRASE 177 (277)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHHHHH
Confidence 445556788899999999999999999999999999999999999999999999999995 778999999999998 999
Q ss_pred HhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCCCCH
Q 016955 171 LGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGHDTV 250 (380)
Q Consensus 171 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 250 (380)
|+++|++++|+||+++||||+++|++++.. +
T Consensus 178 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~--~----------------------------------------------- 208 (277)
T PRK08258 178 LLYTGRSMSAEEGERWGFFNRLVEPEELLA--E----------------------------------------------- 208 (277)
T ss_pred HHHcCCCCCHHHHHHcCCCcEecCHHHHHH--H-----------------------------------------------
Confidence 999999999999999999999999876532 2
Q ss_pred HHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhhhhhhc
Q 016955 251 EEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEGVRTRL 330 (380)
Q Consensus 251 ~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~egv~a~l 330 (380)
+.+++++|++.||.+++.+|++++.....++++.++.|...+..+ +.++|++||+++|+
T Consensus 209 ------------------a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~---~~s~d~~eg~~af~ 267 (277)
T PRK08258 209 ------------------AQALARRLAAGPTFAHGMTKTMLHQEWDMGLEEAIEAEAQAQAIC---MQTEDFRRAYEAFV 267 (277)
T ss_pred ------------------HHHHHHHHHhCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHH---hcCchHHHHHHHHh
Confidence 236689999999999999999999888889999999999999888 77999999999999
Q ss_pred ccCCCCCCCCC
Q 016955 331 VEKSFAPKWDP 341 (380)
Q Consensus 331 ~~k~r~P~w~~ 341 (380)
+ | |+|+|++
T Consensus 268 e-k-r~p~~~~ 276 (277)
T PRK08258 268 A-K-RKPVFEG 276 (277)
T ss_pred c-C-CCCCCCC
Confidence 6 5 7999975
No 21
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.3e-52 Score=394.62 Aligned_cols=254 Identities=27% Similarity=0.383 Sum_probs=228.4
Q ss_pred CcEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHH
Q 016955 12 NMVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECK 91 (380)
Q Consensus 12 ~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~ 91 (380)
..+.++++++|++||||||++ |++|.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++.... ......
T Consensus 2 ~~i~~~~~~~v~~itl~rp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~---~~~~~~ 77 (257)
T PRK07658 2 KFLSVRVEDHVAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVT---EAEQAT 77 (257)
T ss_pred ceEEEEeeCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccC---chhhHH
Confidence 378889999999999999986 9999999999999999999999999999999999999999999875321 112223
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchH-HHH
Q 016955 92 ECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHL-GEY 170 (380)
Q Consensus 92 ~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~-a~~ 170 (380)
.+......++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++
T Consensus 78 ~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~ 157 (257)
T PRK07658 78 ELAQLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALE 157 (257)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHHH
Confidence 3445556788899999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred HhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCCCCH
Q 016955 171 LGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGHDTV 250 (380)
Q Consensus 171 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 250 (380)
|+++|++++|+||+++||||+++|++++. .+
T Consensus 158 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~--~~----------------------------------------------- 188 (257)
T PRK07658 158 MMLTSEPITGAEALKWGLVNGVFPEETLL--DD----------------------------------------------- 188 (257)
T ss_pred HHHcCCCcCHHHHHHcCCcCeecChhHHH--HH-----------------------------------------------
Confidence 99999999999999999999999987763 22
Q ss_pred HHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhhhhhhc
Q 016955 251 EEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEGVRTRL 330 (380)
Q Consensus 251 ~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~egv~a~l 330 (380)
|.+++++|++.||.+++.+|++++.....++.++++.|...+..+ +.++|+++|+++|+
T Consensus 189 ------------------a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~---~~~~~~~egi~af~ 247 (257)
T PRK07658 189 ------------------AKKLAKKIAGKSPATTRAVLELLQTTKSSSYYEGVKREAKIFGEV---FTSEDAKEGVQAFL 247 (257)
T ss_pred ------------------HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---hCCHHHHHHHHHHH
Confidence 236788999999999999999999888889999999999999888 67999999999999
Q ss_pred ccCCCCCCCCC
Q 016955 331 VEKSFAPKWDP 341 (380)
Q Consensus 331 ~~k~r~P~w~~ 341 (380)
+ | |+|+|++
T Consensus 248 ~-k-r~p~~~~ 256 (257)
T PRK07658 248 E-K-RKPSFSG 256 (257)
T ss_pred c-C-CCCCCCC
Confidence 6 5 7999975
No 22
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.6e-52 Score=395.98 Aligned_cols=259 Identities=22% Similarity=0.348 Sum_probs=227.7
Q ss_pred CCcEEEEEcCcEEEEEEcCCCCCCCCCH-HHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhcc--CCH
Q 016955 11 DNMVLVEEGASSRTIILNRPNVLNALLT-PMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSK--GRV 87 (380)
Q Consensus 11 ~~~v~~~~~~~v~~i~lnrp~~~Nal~~-~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~--~~~ 87 (380)
.+.|.++++++|++||||||+++|++|. +|+.+|.++++.++.|+++++|||+|.|++||+|.|++++...... ...
T Consensus 2 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (266)
T PRK09245 2 TDFLLVERDGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGSP 81 (266)
T ss_pred CCceEEEEECCEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhccccccccc
Confidence 4468999999999999999999999995 9999999999999999999999999999999999999987542110 011
Q ss_pred HH-HHHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCch
Q 016955 88 EE-CKECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGH 166 (380)
Q Consensus 88 ~~-~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~ 166 (380)
.. ...+...+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~ 161 (266)
T PRK09245 82 ADIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIGM 161 (266)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhhH
Confidence 11 12233345567888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhh
Q 016955 167 L-GEYLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCF 245 (380)
Q Consensus 167 ~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f 245 (380)
. +++|+++|++++|+||+++||||+++|++++.. +
T Consensus 162 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~--~------------------------------------------ 197 (266)
T PRK09245 162 ARAAEMAFTGDAIDAATALEWGLVSRVVPADQLLP--A------------------------------------------ 197 (266)
T ss_pred HHHHHHHHcCCCcCHHHHHHcCCcceecCHHHHHH--H------------------------------------------
Confidence 8 999999999999999999999999999877632 2
Q ss_pred CCCCHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhh
Q 016955 246 GHDTVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEG 325 (380)
Q Consensus 246 ~~~~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~eg 325 (380)
+.+++++|++.||.+++.+|++++.....++.+.+..|...+..+ +.++|++||
T Consensus 198 -----------------------a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~---~~~~d~~eg 251 (266)
T PRK09245 198 -----------------------ARALAERIAANPPHALRLTKRLLREGQHASLDTLLELSAAYQALA---HHTADHREA 251 (266)
T ss_pred -----------------------HHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH---hcCHhHHHH
Confidence 236689999999999999999999887788999999998888777 679999999
Q ss_pred hhhhcccCCCCCCCCC
Q 016955 326 VRTRLVEKSFAPKWDP 341 (380)
Q Consensus 326 v~a~l~~k~r~P~w~~ 341 (380)
+++|++ | |.|.|+.
T Consensus 252 ~~af~~-k-r~p~~~~ 265 (266)
T PRK09245 252 VDAFLE-K-RPPVFTG 265 (266)
T ss_pred HHHHHc-C-CCCCCCC
Confidence 999996 5 7999975
No 23
>PRK08139 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=2.1e-52 Score=394.82 Aligned_cols=257 Identities=21% Similarity=0.301 Sum_probs=229.4
Q ss_pred CCCcEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHH
Q 016955 10 ADNMVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEE 89 (380)
Q Consensus 10 ~~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 89 (380)
....+.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++.... ....
T Consensus 9 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~---~~~~ 85 (266)
T PRK08139 9 EAPLLLREDRDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAAR---GLAY 85 (266)
T ss_pred cCCceEEEeeCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhccc---chhH
Confidence 4568899999999999999999999999999999999999999999999999999999999999999875321 1222
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchH-H
Q 016955 90 CKECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHL-G 168 (380)
Q Consensus 90 ~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~-a 168 (380)
...+++.+.+++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++| +++|++++|.. +
T Consensus 86 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~-~~~l~r~vG~~~A 164 (266)
T PRK08139 86 FRALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTP-MVALSRNVPRKQA 164 (266)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCcc-HHHHHHHhCHHHH
Confidence 344555667788899999999999999999999999999999999999999999999999999765 56899999998 9
Q ss_pred HHHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCCC
Q 016955 169 EYLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGHD 248 (380)
Q Consensus 169 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 248 (380)
++|++||++++|+||+++||||+++|++++..
T Consensus 165 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~------------------------------------------------ 196 (266)
T PRK08139 165 MEMLLTGEFIDAATAREWGLVNRVVPADALDA------------------------------------------------ 196 (266)
T ss_pred HHHHHcCCccCHHHHHHcCCccEeeChhHHHH------------------------------------------------
Confidence 99999999999999999999999999877632
Q ss_pred CHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhhhhh
Q 016955 249 TVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEGVRT 328 (380)
Q Consensus 249 ~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~egv~a 328 (380)
.+.+++++|++.||.+++.+|+++++....++.+++..|...+..+ +.++|+++|+++
T Consensus 197 -------------------~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~---~~~~d~~eg~~a 254 (266)
T PRK08139 197 -------------------AVARLAAVIAAKSPAAVRIGKEAFYRQAEMPLADAYAYAGDVMAEN---MMAEDAEEGIDA 254 (266)
T ss_pred -------------------HHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH---hcCchHHHHHHH
Confidence 1236689999999999999999999988888999999999988888 679999999999
Q ss_pred hcccCCCCCCCCCC
Q 016955 329 RLVEKSFAPKWDPP 342 (380)
Q Consensus 329 ~l~~k~r~P~w~~~ 342 (380)
|++ | |+|+|.++
T Consensus 255 f~~-k-r~p~~~~~ 266 (266)
T PRK08139 255 FLE-K-RPPEWRGR 266 (266)
T ss_pred Hhc-C-CCCCCCCC
Confidence 995 5 79999753
No 24
>PLN02600 enoyl-CoA hydratase
Probab=100.00 E-value=1.5e-52 Score=392.62 Aligned_cols=248 Identities=23% Similarity=0.369 Sum_probs=224.0
Q ss_pred cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeC-CCccccccCchHHHHHhccCCHHHHHHHHHHH
Q 016955 19 GASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGN-GRSFCAGGDVVTLYRLLSKGRVEECKECFRTF 97 (380)
Q Consensus 19 ~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~-g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~ 97 (380)
+++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||. |++||+|+|++++... .......+...+
T Consensus 2 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~----~~~~~~~~~~~~ 77 (251)
T PLN02600 2 DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKM----SPSEVQKFVNSL 77 (251)
T ss_pred CCcEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhcc----ChHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999998 5899999999987532 122233455566
Q ss_pred HHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchH-HHHHhhcCC
Q 016955 98 YSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHL-GEYLGLTGG 176 (380)
Q Consensus 98 ~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~-a~~l~ltG~ 176 (380)
..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++|++||+
T Consensus 78 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~ 157 (251)
T PLN02600 78 RSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGR 157 (251)
T ss_pred HHHHHHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCC
Confidence 7788899999999999999999999999999999999999999999999999999999999999999998 999999999
Q ss_pred CcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCCCCHHHHHHH
Q 016955 177 RLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGHDTVEEIIGA 256 (380)
Q Consensus 177 ~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~i~~~ 256 (380)
+++|+||+++||||+++|++++. .+
T Consensus 158 ~~~a~eA~~~Glv~~vv~~~~~~--~~----------------------------------------------------- 182 (251)
T PLN02600 158 RIGAREAASMGLVNYCVPAGEAY--EK----------------------------------------------------- 182 (251)
T ss_pred ccCHHHHHHcCCCcEeeChhHHH--HH-----------------------------------------------------
Confidence 99999999999999999988762 22
Q ss_pred HHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhhhhhhcccCCCC
Q 016955 257 LESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEGVRTRLVEKSFA 336 (380)
Q Consensus 257 L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~egv~a~l~~k~r~ 336 (380)
+.+++++|++.||.+++.+|++++.....++.+.++.|...+..+ +.++|++||+++|++ | |+
T Consensus 183 ------------a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~---~~~~d~~eg~~af~e-k-r~ 245 (251)
T PLN02600 183 ------------ALELAQEINQKGPLAIKMAKKAINEGSEVDMASGLEIEEECYEQV---LKTKDRLEGLAAFAE-K-RK 245 (251)
T ss_pred ------------HHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH---hCCHHHHHHHHHHhc-C-CC
Confidence 236789999999999999999999887789999999999999888 779999999999996 5 79
Q ss_pred CCCCCC
Q 016955 337 PKWDPP 342 (380)
Q Consensus 337 P~w~~~ 342 (380)
|.|+.+
T Consensus 246 p~~~~~ 251 (251)
T PLN02600 246 PVYTGK 251 (251)
T ss_pred CCCCCC
Confidence 999753
No 25
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.4e-52 Score=391.99 Aligned_cols=251 Identities=24% Similarity=0.314 Sum_probs=221.6
Q ss_pred CCcEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHH
Q 016955 11 DNMVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEEC 90 (380)
Q Consensus 11 ~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 90 (380)
.+.|.++++++|++||||||++.|++|.+|+.+|.+++++++.|+++++|||+|.|++||+|+|++++.... .....
T Consensus 2 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~---~~~~~ 78 (254)
T PRK08252 2 SDEVLVERRGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGE---RPSIP 78 (254)
T ss_pred CceEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhccc---chhhh
Confidence 356899999999999999999999999999999999999999999999999999999999999999876421 11111
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchH-HH
Q 016955 91 KECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHL-GE 169 (380)
Q Consensus 91 ~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~-a~ 169 (380)
. ..+..+. ...+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. ++
T Consensus 79 ~---~~~~~~~--~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~ 153 (254)
T PRK08252 79 G---RGFGGLT--ERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAM 153 (254)
T ss_pred H---HHHHHHH--HhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHHH
Confidence 1 1122222 2479999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCCCC
Q 016955 170 YLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGHDT 249 (380)
Q Consensus 170 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 249 (380)
+|+++|++++|+||+++||||+++|++++. .
T Consensus 154 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~--~----------------------------------------------- 184 (254)
T PRK08252 154 ELALTGDMLTAERAHELGLVNRLTEPGQAL--D----------------------------------------------- 184 (254)
T ss_pred HHHHcCCccCHHHHHHcCCcceecCcchHH--H-----------------------------------------------
Confidence 999999999999999999999999988762 2
Q ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhhhhhh
Q 016955 250 VEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEGVRTR 329 (380)
Q Consensus 250 ~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~egv~a~ 329 (380)
.|.+++++|+..||.+++.+|++++.....++.++++.|...+..+ +.++|++||+++|
T Consensus 185 ------------------~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~---~~~~~~~eg~~af 243 (254)
T PRK08252 185 ------------------AALELAERIAANGPLAVAASKRIVVESGDWSEDEMFARQRELIAPV---FTSADAKEGATAF 243 (254)
T ss_pred ------------------HHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH---hcCchHHHHHHHH
Confidence 2336789999999999999999999887778999999999988888 6799999999999
Q ss_pred cccCCCCCCCCC
Q 016955 330 LVEKSFAPKWDP 341 (380)
Q Consensus 330 l~~k~r~P~w~~ 341 (380)
++ | |+|+|..
T Consensus 244 ~~-k-r~p~~~~ 253 (254)
T PRK08252 244 AE-K-RAPVWTG 253 (254)
T ss_pred hc-C-CCCCCCC
Confidence 96 5 7999975
No 26
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=100.00 E-value=2.2e-52 Score=392.81 Aligned_cols=254 Identities=26% Similarity=0.399 Sum_probs=224.1
Q ss_pred EEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHH
Q 016955 14 VLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKEC 93 (380)
Q Consensus 14 v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~ 93 (380)
|.++++++|++||||||++.|++|.+|+.+|.++++.++.|+ +++|||||.|++||+|+|++++.... ....+....+
T Consensus 1 ~~~e~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~-~~~~~~~~~~ 78 (256)
T TIGR02280 1 ILSALEAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTP-GGAPDLGRTI 78 (256)
T ss_pred CeEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhcc-ccchhHHHHH
Confidence 467889999999999999999999999999999999999998 99999999999999999999875421 1111111122
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchH-HHHHh
Q 016955 94 FRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHL-GEYLG 172 (380)
Q Consensus 94 ~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~-a~~l~ 172 (380)
...+..++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|+. +++|+
T Consensus 79 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l~ 158 (256)
T TIGR02280 79 ETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLA 158 (256)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHHH
Confidence 22234577889999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred hcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCCCCHHH
Q 016955 173 LTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGHDTVEE 252 (380)
Q Consensus 173 ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~ 252 (380)
++|++++|+||+++||||+++|++++. .+
T Consensus 159 l~g~~~~a~eA~~~Glv~~vv~~~~l~--~~------------------------------------------------- 187 (256)
T TIGR02280 159 MLGEKLDARTAASWGLIWQVVDDAALM--DE------------------------------------------------- 187 (256)
T ss_pred HcCCCCCHHHHHHcCCcceeeChHHHH--HH-------------------------------------------------
Confidence 999999999999999999999987653 22
Q ss_pred HHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhhhhhhccc
Q 016955 253 IIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEGVRTRLVE 332 (380)
Q Consensus 253 i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~egv~a~l~~ 332 (380)
+.+++++|+..||.+++.+|++++......+.+++..|...+..+ +.++|+++|+++|++
T Consensus 188 ----------------a~~~a~~la~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~---~~~~d~~eg~~af~~- 247 (256)
T TIGR02280 188 ----------------AQALAVHLAAQPTRGLALTKRAIQAAATNSLDTQLDLERDLQREL---GRSADYAEGVTAFLD- 247 (256)
T ss_pred ----------------HHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHH---hcChhHHHHHHHHHc-
Confidence 236789999999999999999999888888999999999988888 779999999999996
Q ss_pred CCCCCCCCC
Q 016955 333 KSFAPKWDP 341 (380)
Q Consensus 333 k~r~P~w~~ 341 (380)
| |.|+|++
T Consensus 248 k-r~p~~~~ 255 (256)
T TIGR02280 248 K-RNPQFTG 255 (256)
T ss_pred C-CCCCCCC
Confidence 5 7999975
No 27
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-52 Score=393.40 Aligned_cols=252 Identities=23% Similarity=0.230 Sum_probs=221.1
Q ss_pred EEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHH
Q 016955 14 VLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKEC 93 (380)
Q Consensus 14 v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~ 93 (380)
|.++++++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++........ ..+
T Consensus 1 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~----~~~ 76 (255)
T PRK06563 1 VSRERRGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAGG----FPF 76 (255)
T ss_pred CeEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccch----hhh
Confidence 4678899999999999999999999999999999999999999999999999999999999998754211111 111
Q ss_pred HHHHHH-HHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchH-HHHH
Q 016955 94 FRTFYS-LMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHL-GEYL 171 (380)
Q Consensus 94 ~~~~~~-l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~-a~~l 171 (380)
...... +...+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. +++|
T Consensus 77 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l 156 (255)
T PRK06563 77 PEGGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRY 156 (255)
T ss_pred hhhhhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHH
Confidence 111122 22357899999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred hhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCCCCHH
Q 016955 172 GLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGHDTVE 251 (380)
Q Consensus 172 ~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ 251 (380)
++||++++|+||+++||||+++|++++. .++
T Consensus 157 ~ltg~~~~a~eA~~~Glv~~vv~~~~l~--~~a----------------------------------------------- 187 (255)
T PRK06563 157 LLTGDEFDAQEALRLGLVQEVVPPGEQL--ERA----------------------------------------------- 187 (255)
T ss_pred HHcCCCcCHHHHHHcCCCcEeeCHHHHH--HHH-----------------------------------------------
Confidence 9999999999999999999999987662 222
Q ss_pred HHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhhhhhhcc
Q 016955 252 EIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEGVRTRLV 331 (380)
Q Consensus 252 ~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~egv~a~l~ 331 (380)
.+++++|++.||.+++.+|++++.....++.++++.|...+..+ +.++|++||+++|++
T Consensus 188 ------------------~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~---~~~~d~~eg~~af~~ 246 (255)
T PRK06563 188 ------------------IELAERIARAAPLGVQATLASARAAVREGEAAAAAQLPPELRPL---FTSEDAKEGVQAFLE 246 (255)
T ss_pred ------------------HHHHHHHHhcCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH---hcCchHHHHHHHHhc
Confidence 36689999999999999999999887889999999999988888 679999999999996
Q ss_pred cCCCCCCCCC
Q 016955 332 EKSFAPKWDP 341 (380)
Q Consensus 332 ~k~r~P~w~~ 341 (380)
| |.|.|++
T Consensus 247 -k-r~p~~~~ 254 (255)
T PRK06563 247 -R-RPARFKG 254 (255)
T ss_pred -C-CCCCCCC
Confidence 5 7899975
No 28
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.7e-52 Score=393.51 Aligned_cols=259 Identities=22% Similarity=0.361 Sum_probs=225.4
Q ss_pred CCCcEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHH
Q 016955 10 ADNMVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEE 89 (380)
Q Consensus 10 ~~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 89 (380)
.++.+.++++++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++...... ....
T Consensus 2 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~-~~~~ 80 (262)
T PRK05995 2 MYETLEIEQRGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGY-SDDE 80 (262)
T ss_pred CCceEEEEeeCCEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhccc-Cchh
Confidence 456799999999999999999999999999999999999999999999999999999999999999987532111 1111
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchH-H
Q 016955 90 CKECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHL-G 168 (380)
Q Consensus 90 ~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~-a 168 (380)
.......++.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++ +|++++|.. +
T Consensus 81 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vg~~~a 159 (262)
T PRK05995 81 NRADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISP-YVIRAMGERAA 159 (262)
T ss_pred hhhHHHHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHH-HHHHHhCHHHH
Confidence 11223455678889999999999999999999999999999999999999999999999999988775 488999998 9
Q ss_pred HHHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCCC
Q 016955 169 EYLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGHD 248 (380)
Q Consensus 169 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 248 (380)
++|+++|++++|+||+++||||+++|++++.. +
T Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~--~--------------------------------------------- 192 (262)
T PRK05995 160 RRYFLTAERFDAAEALRLGLVHEVVPAEALDA--K--------------------------------------------- 192 (262)
T ss_pred HHHHHcCCccCHHHHHHcCCCCeecCHHHHHH--H---------------------------------------------
Confidence 99999999999999999999999998876532 1
Q ss_pred CHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHH-HHHHHHHHHHHhhhCCCCcHHhhhh
Q 016955 249 TVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEEC-LKREYRMSMRMISRQISNDFCEGVR 327 (380)
Q Consensus 249 ~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~-l~~e~~~~~~~~~~~~~~d~~egv~ 327 (380)
+.+++++|++.||.+++.+|++++.....++.+. ++.|...+..+ +.++|+++|++
T Consensus 193 --------------------a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~---~~~~d~~e~~~ 249 (262)
T PRK05995 193 --------------------VDELLAALVANSPQAVRAGKRLVRDVAGRPIDAALIADTASRIALI---RATEEAREGVA 249 (262)
T ss_pred --------------------HHHHHHHHHhCCHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHH---hcCHHHHHHHH
Confidence 2367899999999999999999998877788888 78888777777 67999999999
Q ss_pred hhcccCCCCCCCCCC
Q 016955 328 TRLVEKSFAPKWDPP 342 (380)
Q Consensus 328 a~l~~k~r~P~w~~~ 342 (380)
+|++ | |+|.|+++
T Consensus 250 af~~-k-r~p~~~~~ 262 (262)
T PRK05995 250 AFLE-K-RKPAWRGR 262 (262)
T ss_pred HHhc-C-CCCCCCCC
Confidence 9996 5 79999864
No 29
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.8e-52 Score=394.24 Aligned_cols=261 Identities=23% Similarity=0.312 Sum_probs=230.0
Q ss_pred CCCCcEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcC-CceEEEEEeCCCccccccCchHHHHHhccC--
Q 016955 9 DADNMVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDS-RVGFVVIKGNGRSFCAGGDVVTLYRLLSKG-- 85 (380)
Q Consensus 9 ~~~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~-~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~-- 85 (380)
|+++.+.++++++|++||||||+++|++|.+|+.+|.++++.++.|+ ++++|||+|.|++||+|+|++++.......
T Consensus 1 ~~~~~v~~~~~~~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 80 (266)
T PRK05981 1 MQFKKVTLDFDGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDS 80 (266)
T ss_pred CCcceEEEEeECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhcccccccc
Confidence 35778999999999999999999999999999999999999999876 499999999999999999999875321110
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCc
Q 016955 86 RVEECKECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPG 165 (380)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g 165 (380)
.......+...++.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~vg 160 (266)
T PRK05981 81 GGDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLVG 160 (266)
T ss_pred cchhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHHhH
Confidence 00112233444567888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hH-HHHHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhh
Q 016955 166 HL-GEYLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKC 244 (380)
Q Consensus 166 ~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 244 (380)
.. +++|+++|++++|+||+++|||++++|++++. .+
T Consensus 161 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~--~~----------------------------------------- 197 (266)
T PRK05981 161 KARAMELSLLGEKLPAETALQWGLVNRVVDDAELM--AE----------------------------------------- 197 (266)
T ss_pred HHHHHHHHHhCCCcCHHHHHHcCCceEeeCHhHHH--HH-----------------------------------------
Confidence 99 99999999999999999999999999987762 22
Q ss_pred hCCCCHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHh
Q 016955 245 FGHDTVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCE 324 (380)
Q Consensus 245 f~~~~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~e 324 (380)
+.+++++|+..||.+++.+|++++.....++.+.++.|...+..+ +.++|++|
T Consensus 198 ------------------------a~~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~---~~s~d~~e 250 (266)
T PRK05981 198 ------------------------AMKLAHELANGPTVALGLIRKLYWDSPENDFEEQLNLEREAQRIA---GKTEDFKE 250 (266)
T ss_pred ------------------------HHHHHHHHHcCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHH---hcChhHHH
Confidence 236788999999999999999999887788999999999988887 77999999
Q ss_pred hhhhhcccCCCCCCCCC
Q 016955 325 GVRTRLVEKSFAPKWDP 341 (380)
Q Consensus 325 gv~a~l~~k~r~P~w~~ 341 (380)
|+++|++ | |.|+|+.
T Consensus 251 ~~~af~~-k-r~~~~~~ 265 (266)
T PRK05981 251 GVGAFLQ-K-RPAQFKG 265 (266)
T ss_pred HHHHHhc-C-CCCCCCC
Confidence 9999996 5 7999975
No 30
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.3e-52 Score=391.80 Aligned_cols=254 Identities=24% Similarity=0.375 Sum_probs=227.2
Q ss_pred CCCcEEEEE-cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHH
Q 016955 10 ADNMVLVEE-GASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVE 88 (380)
Q Consensus 10 ~~~~v~~~~-~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~ 88 (380)
..+.+.+++ +++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++... ..
T Consensus 5 ~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~----~~- 79 (261)
T PRK08138 5 ATDVVLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATA----GA- 79 (261)
T ss_pred CCCCEEEEEccCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhcc----ch-
Confidence 345678887 789999999999999999999999999999999999999999999999999999999987532 11
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchH-
Q 016955 89 ECKECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHL- 167 (380)
Q Consensus 89 ~~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~- 167 (380)
...+....+.++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 80 -~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~ 158 (261)
T PRK08138 80 -IEMYLRHTERYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFK 158 (261)
T ss_pred -hHHHHHHHHHHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHH
Confidence 112334456778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCC
Q 016955 168 GEYLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGH 247 (380)
Q Consensus 168 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 247 (380)
+++|+++|++++|+||+++||||+++|++++. .++
T Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~--~~a------------------------------------------- 193 (261)
T PRK08138 159 AMRMALTGCMVPAPEALAIGLVSEVVEDEQTL--PRA------------------------------------------- 193 (261)
T ss_pred HHHHHHcCCCCCHHHHHHCCCCcEecCchHHH--HHH-------------------------------------------
Confidence 99999999999999999999999999987762 222
Q ss_pred CCHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhhhh
Q 016955 248 DTVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEGVR 327 (380)
Q Consensus 248 ~~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~egv~ 327 (380)
.+++++|++.||.+++.+|++++.....++.+++..|.+.+..+ +.++|+++|++
T Consensus 194 ----------------------~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~---~~~~~~~~~i~ 248 (261)
T PRK08138 194 ----------------------LELAREIARMPPLALAQIKEVVLAGADAPLDAALALERKAFQLL---FDSEDQKEGMD 248 (261)
T ss_pred ----------------------HHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---hcCHHHHHHHH
Confidence 25678899999999999999999888888999999999988888 67999999999
Q ss_pred hhcccCCCCCCCCC
Q 016955 328 TRLVEKSFAPKWDP 341 (380)
Q Consensus 328 a~l~~k~r~P~w~~ 341 (380)
+|++ | |.|+|++
T Consensus 249 af~~-k-r~~~~~~ 260 (261)
T PRK08138 249 AFLE-K-RKPAYKG 260 (261)
T ss_pred HHhc-C-CCCCCCC
Confidence 9996 5 7899975
No 31
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.7e-52 Score=391.82 Aligned_cols=253 Identities=26% Similarity=0.380 Sum_probs=221.0
Q ss_pred CCCcEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCC-CccccccCchHHHHHhccCCHH
Q 016955 10 ADNMVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNG-RSFCAGGDVVTLYRLLSKGRVE 88 (380)
Q Consensus 10 ~~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g-~~F~~G~Dl~~~~~~~~~~~~~ 88 (380)
+++.|.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++..... ...
T Consensus 2 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~--~~~ 79 (259)
T PRK06494 2 ALPFSTVERKGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGK--RGW 79 (259)
T ss_pred CCceeEEEeECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCc--chh
Confidence 567899999999999999999999999999999999999999999999999999998 79999999998754211 101
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchH-
Q 016955 89 ECKECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHL- 167 (380)
Q Consensus 89 ~~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~- 167 (380)
. . ..+..+ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 80 ~-~---~~~~~~-~~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~ 154 (259)
T PRK06494 80 P-E---SGFGGL-TSRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKR 154 (259)
T ss_pred h-h---HHHHHH-HHHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHH
Confidence 1 1 112223 334589999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCC
Q 016955 168 GEYLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGH 247 (380)
Q Consensus 168 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 247 (380)
+++|++||+.++|+||+++||||+++|++++.+ +
T Consensus 155 a~~lll~g~~~~a~eA~~~GLv~~vv~~~~l~~--~-------------------------------------------- 188 (259)
T PRK06494 155 AMGMILTGRRVTAREGLELGFVNEVVPAGELLA--A-------------------------------------------- 188 (259)
T ss_pred HHHHHHcCCcCCHHHHHHcCCCcEecCHhHHHH--H--------------------------------------------
Confidence 999999999999999999999999999876632 1
Q ss_pred CCHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHH--HHHHHHHhhhCCCCcHHhh
Q 016955 248 DTVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKRE--YRMSMRMISRQISNDFCEG 325 (380)
Q Consensus 248 ~~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e--~~~~~~~~~~~~~~d~~eg 325 (380)
+.+++++|+..||.+++.+|+++++....++.++++.| ...+..+ +.++|++||
T Consensus 189 ---------------------a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~d~~eg 244 (259)
T PRK06494 189 ---------------------AERWADDILACSPLSIRASKQAVYRGLEVSLEEAITAQRDYPAVEAR---RASQDYIEG 244 (259)
T ss_pred ---------------------HHHHHHHHHhcCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH---hcCccHHHH
Confidence 23668999999999999999999988888899999998 4556666 679999999
Q ss_pred hhhhcccCCCCCCCCC
Q 016955 326 VRTRLVEKSFAPKWDP 341 (380)
Q Consensus 326 v~a~l~~k~r~P~w~~ 341 (380)
+++|++ | |+|+|+.
T Consensus 245 ~~af~~-k-r~p~~~~ 258 (259)
T PRK06494 245 PKAFAE-K-RPPRWKG 258 (259)
T ss_pred HHHHHc-c-CCCCCCC
Confidence 999996 5 7999975
No 32
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.5e-52 Score=390.55 Aligned_cols=256 Identities=24% Similarity=0.325 Sum_probs=230.4
Q ss_pred CcEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHH
Q 016955 12 NMVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECK 91 (380)
Q Consensus 12 ~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~ 91 (380)
..+.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|.|++++..... .......
T Consensus 3 ~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~-~~~~~~~ 81 (260)
T PRK07511 3 AELLSRREGSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRA-KPPSVQA 81 (260)
T ss_pred CeeEEEeECCEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhccc-ccchhHH
Confidence 458899999999999999999999999999999999999999999999999999999999999998764211 1122334
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchH-HHH
Q 016955 92 ECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHL-GEY 170 (380)
Q Consensus 92 ~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~-a~~ 170 (380)
.++..++.++..+.++||||||+|+|+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++
T Consensus 82 ~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~ 161 (260)
T PRK07511 82 ASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLATE 161 (260)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHHHHHH
Confidence 4556677888999999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred HhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCCCCH
Q 016955 171 LGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGHDTV 250 (380)
Q Consensus 171 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 250 (380)
|++||++++|+||+++||||++|+++++ +.++
T Consensus 162 l~ltg~~~~a~eA~~~Glv~~vv~~~~~--~~~a---------------------------------------------- 193 (260)
T PRK07511 162 LLLEGKPISAERLHALGVVNRLAEPGQA--LAEA---------------------------------------------- 193 (260)
T ss_pred HHHhCCCCCHHHHHHcCCccEeeCchHH--HHHH----------------------------------------------
Confidence 9999999999999999999999998765 2222
Q ss_pred HHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhhhhhhc
Q 016955 251 EEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEGVRTRL 330 (380)
Q Consensus 251 ~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~egv~a~l 330 (380)
.+++++|++.||.+++.+|++++.....++.++++.|...+..+ +.++|+++|+++|+
T Consensus 194 -------------------~~~a~~l~~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~---~~~~~~~~~i~~f~ 251 (260)
T PRK07511 194 -------------------LALADQLAAGSPNALARIKSLIADAPEATLAAQLEAERDHFVAS---LHHADALEGIAAFL 251 (260)
T ss_pred -------------------HHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHH---hcCchHHHHHHHHh
Confidence 25688999999999999999999888889999999999999888 67999999999999
Q ss_pred ccCCCCCCCC
Q 016955 331 VEKSFAPKWD 340 (380)
Q Consensus 331 ~~k~r~P~w~ 340 (380)
+ | |+|.|+
T Consensus 252 ~-~-r~~~~~ 259 (260)
T PRK07511 252 E-K-RAPDYK 259 (260)
T ss_pred c-c-CCCCCC
Confidence 6 4 689995
No 33
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=3.8e-53 Score=384.80 Aligned_cols=251 Identities=27% Similarity=0.412 Sum_probs=224.6
Q ss_pred cEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHH
Q 016955 13 MVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKE 92 (380)
Q Consensus 13 ~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~ 92 (380)
......+++|+.|+||||+++|+++..|+.+|.+++..++.|+.+.++||||.|++||+|.|++++....... ....
T Consensus 38 ~~~~~~d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~---~~~~ 114 (290)
T KOG1680|consen 38 IELVGEDNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQD---VSDG 114 (290)
T ss_pred eEEeecCCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhccccc---cccc
Confidence 3455667899999999999999999999999999999999999999999999999999999999987632111 1111
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchH-HHHH
Q 016955 93 CFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHL-GEYL 171 (380)
Q Consensus 93 ~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~-a~~l 171 (380)
.+.+.+..+.+.+||+||+|||+|+|||++|+++||+|||+++|+|++|+.++|++|.+|++.+|+|.+|.. |++|
T Consensus 115 ---~~~~~~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~ 191 (290)
T KOG1680|consen 115 ---IFLRVWDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEM 191 (290)
T ss_pred ---cccchhhhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChHHHHHH
Confidence 122233444589999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred hhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCCCCHH
Q 016955 172 GLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGHDTVE 251 (380)
Q Consensus 172 ~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ 251 (380)
++||++++|+||+++|||++|||.+++ +.++.
T Consensus 192 ~ltg~~~~AqeA~~~GlVn~Vvp~~~~--l~eAv---------------------------------------------- 223 (290)
T KOG1680|consen 192 ILTGRRLGAQEAKKIGLVNKVVPSGDA--LGEAV---------------------------------------------- 223 (290)
T ss_pred HHhcCcccHHHHHhCCceeEeecchhH--HHHHH----------------------------------------------
Confidence 999999999999999999999999886 44443
Q ss_pred HHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhhhhhhcc
Q 016955 252 EIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEGVRTRLV 331 (380)
Q Consensus 252 ~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~egv~a~l~ 331 (380)
+++++|+++||.+++..|+.++.+.+.++.+++..|...+... +..+|.+|||.+|.+
T Consensus 224 -------------------~l~~~Ia~~~~~~v~~~K~svn~~~e~~l~e~l~~e~~~~~s~---~~~~d~~Eg~~~f~~ 281 (290)
T KOG1680|consen 224 -------------------KLAEQIAKNSPLVVRADKESVNAAYETTLFEGLELERDLFGST---FATEDRLEGMTAFAE 281 (290)
T ss_pred -------------------HHHHHHHhCCHHHHHHHHHHHHHHhhccHHHHHHhhhhhhhhh---hhhHHHHHHHHHhcc
Confidence 6789999999999999999999999999999999999999888 789999999999986
Q ss_pred cCCCCCCCCC
Q 016955 332 EKSFAPKWDP 341 (380)
Q Consensus 332 ~k~r~P~w~~ 341 (380)
| |+|+|+.
T Consensus 282 -k-r~~~~~k 289 (290)
T KOG1680|consen 282 -K-RKPKFSK 289 (290)
T ss_pred -c-CCccccc
Confidence 5 7999984
No 34
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.9e-52 Score=389.82 Aligned_cols=254 Identities=25% Similarity=0.355 Sum_probs=228.3
Q ss_pred CcEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHH
Q 016955 12 NMVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECK 91 (380)
Q Consensus 12 ~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~ 91 (380)
+.+.++++++|++||||||++.|++|.+|+.+|.++++.+ .|+++++|||+|.|++||+|+|++++.... ......
T Consensus 6 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~---~~~~~~ 81 (260)
T PRK07659 6 ESVVVKYEGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLSSN---DESKFD 81 (260)
T ss_pred ceEEEEeeCCEEEEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCCCCcccccCHHHHhhcc---CchhHH
Confidence 5699999999999999999999999999999999999999 588999999999999999999999875421 122334
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchH-HHH
Q 016955 92 ECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHL-GEY 170 (380)
Q Consensus 92 ~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~-a~~ 170 (380)
.++..+++++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++
T Consensus 82 ~~~~~~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~~ 161 (260)
T PRK07659 82 GVMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQ 161 (260)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHHHH
Confidence 5566677888899999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCCCCH
Q 016955 171 LGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGHDTV 250 (380)
Q Consensus 171 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 250 (380)
|++||+.++|+||+++||||++| ++++..
T Consensus 162 l~ltg~~~~a~eA~~~Glv~~vv-~~~~~~-------------------------------------------------- 190 (260)
T PRK07659 162 IIWEGKKLSATEALDLGLIDEVI-GGDFQT-------------------------------------------------- 190 (260)
T ss_pred HHHhCCccCHHHHHHcCChHHHh-hhHHHH--------------------------------------------------
Confidence 99999999999999999999999 665521
Q ss_pred HHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhhhhhhc
Q 016955 251 EEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEGVRTRL 330 (380)
Q Consensus 251 ~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~egv~a~l 330 (380)
.+.+++++|++.||.+++.+|++++.....++.+.++.|...+..+ +.++|++||+++|+
T Consensus 191 -----------------~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~---~~~~~~~egi~af~ 250 (260)
T PRK07659 191 -----------------AAKQKISEWLQKPLKAMIETKQIYCELNRSQLEQVLQLEKRAQYAM---RQTADHKEGIRAFL 250 (260)
T ss_pred -----------------HHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHH---hcCHhHHHHHHHHh
Confidence 2236689999999999999999999888889999999999988888 67999999999999
Q ss_pred ccCCCCCCCCCC
Q 016955 331 VEKSFAPKWDPP 342 (380)
Q Consensus 331 ~~k~r~P~w~~~ 342 (380)
+ | |+|+|+.+
T Consensus 251 ~-k-r~p~~~~~ 260 (260)
T PRK07659 251 E-K-RLPVFKGE 260 (260)
T ss_pred c-C-CCCCCCCC
Confidence 6 5 78999753
No 35
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.4e-51 Score=389.64 Aligned_cols=260 Identities=21% Similarity=0.276 Sum_probs=223.4
Q ss_pred CCCCCCCCCcEEEEE-cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHh
Q 016955 4 LNDCNDADNMVLVEE-GASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLL 82 (380)
Q Consensus 4 ~~~~~~~~~~v~~~~-~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~ 82 (380)
+-++...++.|.+++ +++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|+.++....
T Consensus 3 ~~~~~~~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~ 82 (268)
T PRK07327 3 MLARYADYPALRFDRPPPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMA 82 (268)
T ss_pred ccccCCCCCeEEEEecCCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhcc
Confidence 445666788899998 5899999999999999999999999999999999999999999999999999999999875421
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhh
Q 016955 83 SKGRVEECKECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSH 162 (380)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r 162 (380)
........++...+.++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++
T Consensus 83 --~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~ 160 (268)
T PRK07327 83 --DDFEVRARVWREARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPL 160 (268)
T ss_pred --CcHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHH
Confidence 122223344555677888999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchH-HHHHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHH
Q 016955 163 LPGHL-GEYLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETL 241 (380)
Q Consensus 163 ~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 241 (380)
++|.. +++|++||++++|+||+++|||++++|++++. ++
T Consensus 161 ~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~--~~-------------------------------------- 200 (268)
T PRK07327 161 LCGMAKAKYYLLLCEPVSGEEAERIGLVSLAVDDDELL--PK-------------------------------------- 200 (268)
T ss_pred HhCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHH--HH--------------------------------------
Confidence 99998 99999999999999999999999999987762 22
Q ss_pred hhhhCCCCHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhC---CHHHHHHHHHHHHHHHhhhCC
Q 016955 242 NKCFGHDTVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFE---TLEECLKREYRMSMRMISRQI 318 (380)
Q Consensus 242 ~~~f~~~~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~---~l~~~l~~e~~~~~~~~~~~~ 318 (380)
|.+++++|++.||.+++.+|++++..... .+++.+..+ ..+ +.
T Consensus 201 ---------------------------a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~----~~~---~~ 246 (268)
T PRK07327 201 ---------------------------ALEVAERLAAGSQTAIRWTKYALNNWLRMAGPTFDTSLALE----FMG---FS 246 (268)
T ss_pred ---------------------------HHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhHHHHHHHH----HHH---cc
Confidence 23678999999999999999999865321 344444443 234 67
Q ss_pred CCcHHhhhhhhcccCCCCCCCCC
Q 016955 319 SNDFCEGVRTRLVEKSFAPKWDP 341 (380)
Q Consensus 319 ~~d~~egv~a~l~~k~r~P~w~~ 341 (380)
++|++||+++|++ | |+|.|++
T Consensus 247 ~~d~~eg~~af~e-k-r~p~~~~ 267 (268)
T PRK07327 247 GPDVREGLASLRE-K-RAPDFPG 267 (268)
T ss_pred ChhHHHHHHHHHh-c-CCCCCCC
Confidence 9999999999996 5 7999974
No 36
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-51 Score=387.96 Aligned_cols=258 Identities=22% Similarity=0.308 Sum_probs=223.2
Q ss_pred CCCcEEEEEc-CcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHH
Q 016955 10 ADNMVLVEEG-ASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVE 88 (380)
Q Consensus 10 ~~~~v~~~~~-~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~ 88 (380)
+++.+.+++. ++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++...... ...
T Consensus 2 ~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~-~~~ 80 (262)
T PRK07468 2 MFETIRIAVDARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTA-DRA 80 (262)
T ss_pred CcceEEEEEcCCcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhccc-chh
Confidence 3566888885 68999999999999999999999999999999999999999999999999999999987532111 111
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchH-
Q 016955 89 ECKECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHL- 167 (380)
Q Consensus 89 ~~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~- 167 (380)
........+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++ +|..
T Consensus 81 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~~~-vG~~~ 159 (262)
T PRK07468 81 TRIEEARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVVAR-MGEAN 159 (262)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHHhh-ccHHH
Confidence 11223345567888999999999999999999999999999999999999999999999999999999986654 8988
Q ss_pred HHHHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCC
Q 016955 168 GEYLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGH 247 (380)
Q Consensus 168 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 247 (380)
+++|++||++++|+||+++||||+++|++++..
T Consensus 160 a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~----------------------------------------------- 192 (262)
T PRK07468 160 ARRVFMSARLFDAEEAVRLGLLSRVVPAERLDA----------------------------------------------- 192 (262)
T ss_pred HHHHHHhCCccCHHHHHHcCCcceecCHHHHHH-----------------------------------------------
Confidence 999999999999999999999999999876532
Q ss_pred CCHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhhhh
Q 016955 248 DTVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEGVR 327 (380)
Q Consensus 248 ~~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~egv~ 327 (380)
.+.+++++|++.||.+++.+|++++......+.++++.|...+..+ +.++|++||++
T Consensus 193 --------------------~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~---~~s~d~~e~~~ 249 (262)
T PRK07468 193 --------------------AVEAEVTPYLSCAPGAVAAAKALVRALGAPIDEAVIDATIEALADT---WETEEAREGIA 249 (262)
T ss_pred --------------------HHHHHHHHHHhcCHHHHHHHHHHHHhhhccChHHHHHHHHHHHHHH---hcCHHHHHHHH
Confidence 1235688999999999999999999776557788999998888888 77999999999
Q ss_pred hhcccCCCCCCCCC
Q 016955 328 TRLVEKSFAPKWDP 341 (380)
Q Consensus 328 a~l~~k~r~P~w~~ 341 (380)
+|++ | |+|+|..
T Consensus 250 af~~-k-r~~~~~~ 261 (262)
T PRK07468 250 AFFD-K-RAPAWRG 261 (262)
T ss_pred HHHc-C-CCCCCCC
Confidence 9996 5 7999964
No 37
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.1e-51 Score=386.34 Aligned_cols=255 Identities=22% Similarity=0.364 Sum_probs=225.9
Q ss_pred CCCCcEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHH
Q 016955 9 DADNMVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVE 88 (380)
Q Consensus 9 ~~~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~ 88 (380)
++++.|.++++++|++||||||+ .|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++..... ...
T Consensus 1 ~~~~~i~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~--~~~ 77 (257)
T PRK06495 1 MMMSQLKLEVSDHVAVVTLDNPP-VNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIK--GPG 77 (257)
T ss_pred CCcceEEEEeeCCEEEEEECCCc-cccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccC--Cch
Confidence 46778999999999999999998 599999999999999999999999999999999999999999998754211 112
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchH-
Q 016955 89 ECKECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHL- 167 (380)
Q Consensus 89 ~~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~- 167 (380)
....+....+.++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|+. |+++++++++|..
T Consensus 78 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~---~~~~~l~~~~g~~~ 154 (257)
T PRK06495 78 DLRAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGHSL 154 (257)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCcc---ccHHHHHHHhCHHH
Confidence 223344556678888999999999999999999999999999999999999999999999996 4567899999998
Q ss_pred HHHHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCC
Q 016955 168 GEYLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGH 247 (380)
Q Consensus 168 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 247 (380)
+++|+++|++++|+||+++||||+++|++++.. +
T Consensus 155 a~~lll~g~~~~a~eA~~~GLv~~vv~~~~~~~--~-------------------------------------------- 188 (257)
T PRK06495 155 TRRMMLTGYRVPAAELYRRGVIEACLPPEELMP--E-------------------------------------------- 188 (257)
T ss_pred HHHHHHcCCeeCHHHHHHcCCcceecCHHHHHH--H--------------------------------------------
Confidence 999999999999999999999999999877632 2
Q ss_pred CCHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhhhh
Q 016955 248 DTVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEGVR 327 (380)
Q Consensus 248 ~~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~egv~ 327 (380)
+.+++++|++.||.+++.+|++++.....++.++++.|...+..+ +.++|++||++
T Consensus 189 ---------------------a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~---~~s~d~~egi~ 244 (257)
T PRK06495 189 ---------------------AMEIAREIASKSPLATRLAKDALNTIENMSLRDGYRYEQDITAKL---AKTEDAKEAQR 244 (257)
T ss_pred ---------------------HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---hcChHHHHHHH
Confidence 236789999999999999999999888889999999999988888 67999999999
Q ss_pred hhcccCCCCCCCCC
Q 016955 328 TRLVEKSFAPKWDP 341 (380)
Q Consensus 328 a~l~~k~r~P~w~~ 341 (380)
+|++ | |+|.|+.
T Consensus 245 af~~-k-r~p~~~~ 256 (257)
T PRK06495 245 AFLE-K-RPPVFKG 256 (257)
T ss_pred HHhc-c-CCCCCCC
Confidence 9996 5 7999975
No 38
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.3e-51 Score=389.31 Aligned_cols=261 Identities=27% Similarity=0.351 Sum_probs=226.4
Q ss_pred CCCCcEEEEEcC-cEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCH
Q 016955 9 DADNMVLVEEGA-SSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRV 87 (380)
Q Consensus 9 ~~~~~v~~~~~~-~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~ 87 (380)
+.++.|.+++++ +|++||||||+++|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++.........
T Consensus 2 ~~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~ 81 (272)
T PRK06210 2 MAYDAVLYEVADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGR 81 (272)
T ss_pred CCcceEEEEECCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCccccc
Confidence 345789999998 9999999999999999999999999999999999999999999999999999999987542110000
Q ss_pred --HHHHHH----HHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHh
Q 016955 88 --EECKEC----FRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLS 161 (380)
Q Consensus 88 --~~~~~~----~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~ 161 (380)
.....+ ...+++++..+..+||||||+|+|+|+|||++|+++||+||++++++|++||+++|++|++|++++|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~ 161 (272)
T PRK06210 82 RDTDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILP 161 (272)
T ss_pred ccccchhhhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhhhH
Confidence 000011 11234567788999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCchH-HHHHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHH
Q 016955 162 HLPGHL-GEYLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVET 240 (380)
Q Consensus 162 r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (380)
+++|.. +++|++||++++|++|+++||||+++|++++. .+
T Consensus 162 ~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~--~~------------------------------------- 202 (272)
T PRK06210 162 RLVGHANALDLLLSARTFYAEEALRLGLVNRVVPPDELM--ER------------------------------------- 202 (272)
T ss_pred hhhCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHH--HH-------------------------------------
Confidence 999999 99999999999999999999999999987652 22
Q ss_pred HhhhhCCCCHHHHHHHHHhcccccchHHHHHHHHHHHhc-CchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCC
Q 016955 241 LNKCFGHDTVEEIIGALESEVAETNDEWCLSTLKKLREA-PPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQIS 319 (380)
Q Consensus 241 i~~~f~~~~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~-sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~ 319 (380)
+.+++++|++. ||.+++.+|+++++....++.++++.|...+..+ +.+
T Consensus 203 ----------------------------a~~~a~~i~~~~~p~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~---~~~ 251 (272)
T PRK06210 203 ----------------------------TLAYAEDLARNVSPASMAVIKRQLYEDAFQTLAEATARANREMHES---LQR 251 (272)
T ss_pred ----------------------------HHHHHHHHHhcCCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH---hcC
Confidence 23668899985 9999999999999887889999999999988887 679
Q ss_pred CcHHhhhhhhcccCCCCCCCCC
Q 016955 320 NDFCEGVRTRLVEKSFAPKWDP 341 (380)
Q Consensus 320 ~d~~egv~a~l~~k~r~P~w~~ 341 (380)
+|++||+++|++ | |+|.|..
T Consensus 252 ~~~~egi~af~~-k-r~p~~~~ 271 (272)
T PRK06210 252 PDFIEGVASFLE-K-RPPRFPG 271 (272)
T ss_pred ccHHHHHHHHhc-c-CCCCCCC
Confidence 999999999996 5 7999964
No 39
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3e-51 Score=385.87 Aligned_cols=255 Identities=31% Similarity=0.423 Sum_probs=230.3
Q ss_pred CCCcEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHH
Q 016955 10 ADNMVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEE 89 (380)
Q Consensus 10 ~~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 89 (380)
+...+.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++..... . .
T Consensus 3 ~~~~i~~~~~~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~--~-~- 78 (259)
T PRK06688 3 MVTDLLVELEDGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPP--K-P- 78 (259)
T ss_pred CCCceEEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCc--c-h-
Confidence 34568999999999999999999999999999999999999999999999999999999999999998764311 1 1
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchH-H
Q 016955 90 CKECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHL-G 168 (380)
Q Consensus 90 ~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~-a 168 (380)
..+...+++++..+..+|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|.. +
T Consensus 79 -~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a 157 (259)
T PRK06688 79 -PDELAPVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARA 157 (259)
T ss_pred -HHHHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHHH
Confidence 23455667888899999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred HHHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCCC
Q 016955 169 EYLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGHD 248 (380)
Q Consensus 169 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 248 (380)
.+|+++|++++|+||+++||||+++|++++. .+
T Consensus 158 ~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~--~~--------------------------------------------- 190 (259)
T PRK06688 158 AEMLLLGEPLSAEEALRIGLVNRVVPAAELD--AE--------------------------------------------- 190 (259)
T ss_pred HHHHHhCCccCHHHHHHcCCcceecCHHHHH--HH---------------------------------------------
Confidence 9999999999999999999999999977652 12
Q ss_pred CHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhhhhh
Q 016955 249 TVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEGVRT 328 (380)
Q Consensus 249 ~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~egv~a 328 (380)
|.+++++|++.||.+++.+|+++++....++++++..|...+..+ +.++|+++|+++
T Consensus 191 --------------------a~~~a~~i~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~---~~~~~~~~~~~a 247 (259)
T PRK06688 191 --------------------ADAQAAKLAAGPASALRYTKRAINAATLTELEEALAREAAGFGRL---LRTPDFREGATA 247 (259)
T ss_pred --------------------HHHHHHHHHhCCHHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHH---hCCHHHHHHHHH
Confidence 236688999999999999999999888889999999999998888 679999999999
Q ss_pred hcccCCCCCCCCC
Q 016955 329 RLVEKSFAPKWDP 341 (380)
Q Consensus 329 ~l~~k~r~P~w~~ 341 (380)
|++ | |+|+|+.
T Consensus 248 f~~-~-~~p~~~~ 258 (259)
T PRK06688 248 FIE-K-RKPDFTG 258 (259)
T ss_pred HHc-C-CCCCCCC
Confidence 996 5 7899964
No 40
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.6e-51 Score=388.47 Aligned_cols=263 Identities=21% Similarity=0.320 Sum_probs=223.6
Q ss_pred CCCCCcEEEEE-cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccC-
Q 016955 8 NDADNMVLVEE-GASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKG- 85 (380)
Q Consensus 8 ~~~~~~v~~~~-~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~- 85 (380)
...++.|.+++ +++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++.......
T Consensus 5 ~~~~~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~ 84 (276)
T PRK05864 5 RSTMSLVLVDHPRPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEG 84 (276)
T ss_pred CCCCCceEEeeecCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhccccccc
Confidence 34566788887 7899999999999999999999999999999999999999999999999999999999874211000
Q ss_pred --CHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccC-CCchhHHHhh
Q 016955 86 --RVEECKECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHP-DAGASYYLSH 162 (380)
Q Consensus 86 --~~~~~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p-~~g~~~~L~r 162 (380)
...........++.++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| +.|++++|++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~ 164 (276)
T PRK05864 85 LTRPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPR 164 (276)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHh
Confidence 1111122334556778889999999999999999999999999999999999999999999999997 7889999999
Q ss_pred cCchH-HHHHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHH
Q 016955 163 LPGHL-GEYLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETL 241 (380)
Q Consensus 163 ~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 241 (380)
++|.. +++|+++|++++|+||+++|||++++|++++. .+
T Consensus 165 ~vG~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~--~~-------------------------------------- 204 (276)
T PRK05864 165 AIGSSRAFEIMLTGRDVDAEEAERIGLVSRQVPDEQLL--DT-------------------------------------- 204 (276)
T ss_pred hhCHHHHHHHHHcCCccCHHHHHHcCCcceeeCHHHHH--HH--------------------------------------
Confidence 99999 99999999999999999999999999987763 22
Q ss_pred hhhhCCCCHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhC-CHHHHHHHHHHHHH-HHhhhCCC
Q 016955 242 NKCFGHDTVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFE-TLEECLKREYRMSM-RMISRQIS 319 (380)
Q Consensus 242 ~~~f~~~~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~-~l~~~l~~e~~~~~-~~~~~~~~ 319 (380)
|.+++++|+..||.+++.+|++++..... ++.+.+..|..... .. +.+
T Consensus 205 ---------------------------a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~---~~~ 254 (276)
T PRK05864 205 ---------------------------CYAIAARMAGFSRPGIELTKRTLWSGLDAASLEAHMQAEGLGQLFVR---LLT 254 (276)
T ss_pred ---------------------------HHHHHHHHHhCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHh---ccC
Confidence 23668999999999999999999977664 68888887765432 23 569
Q ss_pred CcHHhhhhhhcccCCCCCCCCCC
Q 016955 320 NDFCEGVRTRLVEKSFAPKWDPP 342 (380)
Q Consensus 320 ~d~~egv~a~l~~k~r~P~w~~~ 342 (380)
+|++||+++|++ | |+|.|++.
T Consensus 255 ~d~~e~~~af~~-k-r~p~~~~~ 275 (276)
T PRK05864 255 ANFEEAVAARAE-K-RPPVFTDD 275 (276)
T ss_pred hhHHHHHHHHhc-c-CCCCCCCC
Confidence 999999999996 5 78999753
No 41
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.4e-51 Score=384.50 Aligned_cols=247 Identities=21% Similarity=0.290 Sum_probs=221.3
Q ss_pred CCCcEEEE-EcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCC-CccccccCchHHHHHhccCCH
Q 016955 10 ADNMVLVE-EGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNG-RSFCAGGDVVTLYRLLSKGRV 87 (380)
Q Consensus 10 ~~~~v~~~-~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g-~~F~~G~Dl~~~~~~~~~~~~ 87 (380)
...++.++ .+++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++... ..
T Consensus 4 ~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~----~~ 79 (256)
T PRK06143 4 LNAHAGVTRDDRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATL----DQ 79 (256)
T ss_pred ccccceeeecCCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhc----Ch
Confidence 44567777 4689999999999999999999999999999999999999999999998 799999999987532 12
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchH
Q 016955 88 EECKECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHL 167 (380)
Q Consensus 88 ~~~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~ 167 (380)
.....+...++.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+ |++|++++|++++|..
T Consensus 80 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~~ 158 (256)
T PRK06143 80 ASAEAFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGWA 158 (256)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCHH
Confidence 223345566677888999999999999999999999999999999999999999999999997 8888899999999999
Q ss_pred -HHHHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhC
Q 016955 168 -GEYLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFG 246 (380)
Q Consensus 168 -a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~ 246 (380)
+++|+++|++++|+||+++||||++||++++..
T Consensus 159 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~---------------------------------------------- 192 (256)
T PRK06143 159 RTRWLLLTGETIDAAQALAWGLVDRVVPLAELDA---------------------------------------------- 192 (256)
T ss_pred HHHHHHHcCCcCCHHHHHHCCCcCeecCHHHHHH----------------------------------------------
Confidence 999999999999999999999999999876632
Q ss_pred CCCHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhhh
Q 016955 247 HDTVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEGV 326 (380)
Q Consensus 247 ~~~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~egv 326 (380)
.+.+++++|+..||.+++.+|++++.....++.+.+..|...+..+ +.++|++||+
T Consensus 193 ---------------------~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~---~~~~d~~e~~ 248 (256)
T PRK06143 193 ---------------------AVERLAASLAGCGPQALRQQKRLLREWEDMPLDVAIDDSVAEFGAA---FLTGEPQRHM 248 (256)
T ss_pred ---------------------HHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH---hcChHHHHHH
Confidence 2236789999999999999999999887788999999999988887 6799999999
Q ss_pred hhhcc
Q 016955 327 RTRLV 331 (380)
Q Consensus 327 ~a~l~ 331 (380)
++|++
T Consensus 249 ~af~e 253 (256)
T PRK06143 249 AAFLN 253 (256)
T ss_pred HHHHh
Confidence 99996
No 42
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=100.00 E-value=2.3e-51 Score=387.50 Aligned_cols=257 Identities=23% Similarity=0.346 Sum_probs=220.1
Q ss_pred CCcEEEEEc-CcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHH
Q 016955 11 DNMVLVEEG-ASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEE 89 (380)
Q Consensus 11 ~~~v~~~~~-~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 89 (380)
++.+.++++ ++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++...... ....
T Consensus 4 ~~~l~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~-~~~~ 82 (265)
T PRK05674 4 FQTIELIRDPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADL-DYNT 82 (265)
T ss_pred cceEEEEEcCCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccc-cchh
Confidence 677999985 78999999999999999999999999999999999999999999999999999999987532110 1111
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchH-H
Q 016955 90 CKECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHL-G 168 (380)
Q Consensus 90 ~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~-a 168 (380)
.......++.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++ ++++++|.. +
T Consensus 83 ~~~~~~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~-~l~~~vG~~~a 161 (265)
T PRK05674 83 NLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISP-FVVKAIGERAA 161 (265)
T ss_pred hhHHHHHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHH-HHHHHhCHHHH
Confidence 11222345678888999999999999999999999999999999999999999999999999987765 588999998 9
Q ss_pred HHHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCCC
Q 016955 169 EYLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGHD 248 (380)
Q Consensus 169 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 248 (380)
++|++||+.++|+||+++|||++++|++++. .+
T Consensus 162 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~--~~--------------------------------------------- 194 (265)
T PRK05674 162 RRYALTAERFDGRRARELGLLAESYPAAELE--AQ--------------------------------------------- 194 (265)
T ss_pred HHHHHhCcccCHHHHHHCCCcceecCHHHHH--HH---------------------------------------------
Confidence 9999999999999999999999999987653 22
Q ss_pred CHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHH-HHHHHHHhhhCCCCcHHhhhh
Q 016955 249 TVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKRE-YRMSMRMISRQISNDFCEGVR 327 (380)
Q Consensus 249 ~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e-~~~~~~~~~~~~~~d~~egv~ 327 (380)
+.+++++|++.||.+++.+|++++.....++.+++..+ ...+..+ +.++|++||++
T Consensus 195 --------------------a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~---~~s~d~~e~~~ 251 (265)
T PRK05674 195 --------------------VEAWIANLLLNSPQALRASKDLLREVGDGELSPALRRYCENAIARI---RVSAEGQEGLR 251 (265)
T ss_pred --------------------HHHHHHHHHhcCHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHH---hcCHHHHHHHH
Confidence 23668999999999999999999988888888887653 3455555 67999999999
Q ss_pred hhcccCCCCCCCCC
Q 016955 328 TRLVEKSFAPKWDP 341 (380)
Q Consensus 328 a~l~~k~r~P~w~~ 341 (380)
+|++ | |+|+|+.
T Consensus 252 af~~-k-r~p~~~~ 263 (265)
T PRK05674 252 AFLE-K-RTPAWQT 263 (265)
T ss_pred HHHc-c-CCCCCCC
Confidence 9996 5 7899974
No 43
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=100.00 E-value=4.2e-51 Score=385.08 Aligned_cols=252 Identities=23% Similarity=0.326 Sum_probs=220.4
Q ss_pred CcEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCC-CccccccCchHHHHHhccCCHHHH
Q 016955 12 NMVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNG-RSFCAGGDVVTLYRLLSKGRVEEC 90 (380)
Q Consensus 12 ~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~~ 90 (380)
+.+.++++++|++||||||+ .|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++..... ...
T Consensus 3 ~~i~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~--~~~-- 77 (261)
T PRK03580 3 ESLHTTRNGSILEITLDRPK-ANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEA--PDA-- 77 (261)
T ss_pred ceEEEEEECCEEEEEECCcc-ccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCc--chh--
Confidence 46899999999999999996 5999999999999999999999999999999998 79999999998753211 111
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchH-HH
Q 016955 91 KECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHL-GE 169 (380)
Q Consensus 91 ~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~-a~ 169 (380)
.+......++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus 78 -~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a~ 156 (261)
T PRK03580 78 -DFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIAN 156 (261)
T ss_pred -hhhhhhhHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHHHH
Confidence 1112223456788899999999999999999999999999999999999999999999999999999999999998 99
Q ss_pred HHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCCCC
Q 016955 170 YLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGHDT 249 (380)
Q Consensus 170 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 249 (380)
+++++|++++|+||+++|||++++|++++.+ +
T Consensus 157 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~--~---------------------------------------------- 188 (261)
T PRK03580 157 EMVMTGRRMDAEEALRWGIVNRVVPQAELMD--R---------------------------------------------- 188 (261)
T ss_pred HHHHhCCccCHHHHHHcCCCcEecCHhHHHH--H----------------------------------------------
Confidence 9999999999999999999999999877632 2
Q ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHH----HHHHHhhhCCCCcHHhh
Q 016955 250 VEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYR----MSMRMISRQISNDFCEG 325 (380)
Q Consensus 250 ~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~----~~~~~~~~~~~~d~~eg 325 (380)
|.+++++|++.||.+++.+|++++.....++.++++.|.. .+..+ +.++|++||
T Consensus 189 -------------------a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---~~~~d~~e~ 246 (261)
T PRK03580 189 -------------------ARELAQQLVNSAPLAIAALKEIYRETSEMPVEEAYRYIRSGVLKHYPSV---LHSEDALEG 246 (261)
T ss_pred -------------------HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHH---hcCccHHHH
Confidence 2366889999999999999999998878889999988864 45555 679999999
Q ss_pred hhhhcccCCCCCCCCC
Q 016955 326 VRTRLVEKSFAPKWDP 341 (380)
Q Consensus 326 v~a~l~~k~r~P~w~~ 341 (380)
+++|++ | |+|.|+.
T Consensus 247 ~~af~e-k-r~~~~~~ 260 (261)
T PRK03580 247 PRAFAE-K-RDPVWKG 260 (261)
T ss_pred HHHHhc-C-CCCCCCC
Confidence 999996 5 7899975
No 44
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=100.00 E-value=3.3e-51 Score=384.68 Aligned_cols=252 Identities=21% Similarity=0.257 Sum_probs=214.3
Q ss_pred CCcEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCC-CccccccCchHHHHHhccCCHHH
Q 016955 11 DNMVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNG-RSFCAGGDVVTLYRLLSKGRVEE 89 (380)
Q Consensus 11 ~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~ 89 (380)
++.|.++++++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++... ....
T Consensus 1 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~--~~~~-- 76 (256)
T TIGR03210 1 YEDILYEKRNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGG--YDGR-- 76 (256)
T ss_pred CCceEEEeeCCEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhcc--ccch--
Confidence 35688999999999999999999999999999999999999999999999999998 799999999987421 1011
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchH-H
Q 016955 90 CKECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHL-G 168 (380)
Q Consensus 90 ~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~-a 168 (380)
..+...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++|++++|.. +
T Consensus 77 -~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A 155 (256)
T TIGR03210 77 -GTIGLPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKA 155 (256)
T ss_pred -hHHHHHHHHHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHH
Confidence 11223345678889999999999999999999999999999999999999999999999998888899999999999 9
Q ss_pred HHHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCCC
Q 016955 169 EYLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGHD 248 (380)
Q Consensus 169 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 248 (380)
++|++||++++|+||+++||||+++|++++.. +
T Consensus 156 ~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~--~--------------------------------------------- 188 (256)
T TIGR03210 156 REIWYLCRRYTAQEALAMGLVNAVVPHDQLDA--E--------------------------------------------- 188 (256)
T ss_pred HHHHHhCCCcCHHHHHHcCCceeeeCHHHHHH--H---------------------------------------------
Confidence 99999999999999999999999999876532 2
Q ss_pred CHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCH-HHHHHHHHHHHHHHhhhCCCCcHHhhhh
Q 016955 249 TVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETL-EECLKREYRMSMRMISRQISNDFCEGVR 327 (380)
Q Consensus 249 ~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l-~~~l~~e~~~~~~~~~~~~~~d~~egv~ 327 (380)
+.+++++|++.||.+++.+|++++....... .+.+ +...+..+ +.++|++||++
T Consensus 189 --------------------a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~--~~~~~~~~---~~~~d~~e~~~ 243 (256)
T TIGR03210 189 --------------------VQKWCDEIVEKSPTAIAIAKRSFNMDTAHQRGIAGM--GMYALKLY---YDTAESREGVK 243 (256)
T ss_pred --------------------HHHHHHHHHhCCHHHHHHHHHHHHHhhcccchHHHH--HHHHHHHH---ccChhHHHHHH
Confidence 2367899999999999999999987644321 1122 33444555 67999999999
Q ss_pred hhcccCCCCCCCCC
Q 016955 328 TRLVEKSFAPKWDP 341 (380)
Q Consensus 328 a~l~~k~r~P~w~~ 341 (380)
+|++ | |+|.|++
T Consensus 244 af~~-k-r~p~~~~ 255 (256)
T TIGR03210 244 AFQE-K-RKPEFRK 255 (256)
T ss_pred HHhc-c-CCCCCCC
Confidence 9996 5 7999964
No 45
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=100.00 E-value=3.3e-51 Score=385.32 Aligned_cols=254 Identities=21% Similarity=0.307 Sum_probs=216.9
Q ss_pred CcEEEEE-cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCC-CccccccCchHHHHHhccCCHHH
Q 016955 12 NMVLVEE-GASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNG-RSFCAGGDVVTLYRLLSKGRVEE 89 (380)
Q Consensus 12 ~~v~~~~-~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~ 89 (380)
+.+.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++...... ....
T Consensus 2 ~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~-~~~~ 80 (259)
T TIGR01929 2 TDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYI-DDSG 80 (259)
T ss_pred ceEEEEEcCCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhcccc-chhh
Confidence 4578888 899999999999999999999999999999999999999999999999 899999999876421100 1111
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchH-H
Q 016955 90 CKECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHL-G 168 (380)
Q Consensus 90 ~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~-a 168 (380)
... .....++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+. +
T Consensus 81 ~~~--~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a 158 (259)
T TIGR01929 81 VHR--LNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKA 158 (259)
T ss_pred HHH--HHHHHHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHH
Confidence 111 1234577788999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred HHHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCCC
Q 016955 169 EYLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGHD 248 (380)
Q Consensus 169 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 248 (380)
++|+++|++++|+||+++||||+++|++++. .+
T Consensus 159 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~--~~--------------------------------------------- 191 (259)
T TIGR01929 159 REIWFLCRQYDAEQALDMGLVNTVVPLADLE--KE--------------------------------------------- 191 (259)
T ss_pred HHHHHhCCccCHHHHHHcCCcccccCHHHHH--HH---------------------------------------------
Confidence 9999999999999999999999999987652 12
Q ss_pred CHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhhhhh
Q 016955 249 TVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEGVRT 328 (380)
Q Consensus 249 ~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~egv~a 328 (380)
+.+++++|++.||.+++.+|++++.... .....+..|...+..+ +.++|++||+++
T Consensus 192 --------------------a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~---~~~~d~~egi~a 247 (259)
T TIGR01929 192 --------------------TVRWCREILQKSPMAIRMLKAALNADCD-GQAGLQELAGNATMLF---YMTEEGQEGRNA 247 (259)
T ss_pred --------------------HHHHHHHHHhCCHHHHHHHHHHHHhhhc-cchHHHHHHHHHHHHH---hcCccHHHHHHH
Confidence 2367899999999999999999987644 2344555566666666 679999999999
Q ss_pred hcccCCCCCCCCC
Q 016955 329 RLVEKSFAPKWDP 341 (380)
Q Consensus 329 ~l~~k~r~P~w~~ 341 (380)
|++ | |.|+|+.
T Consensus 248 f~~-k-r~p~~~~ 258 (259)
T TIGR01929 248 FLE-K-RQPDFSK 258 (259)
T ss_pred Hhc-c-CCCCCCC
Confidence 996 5 7999963
No 46
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.5e-51 Score=384.47 Aligned_cols=251 Identities=29% Similarity=0.424 Sum_probs=224.6
Q ss_pred CCcEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHH
Q 016955 11 DNMVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEEC 90 (380)
Q Consensus 11 ~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 90 (380)
++++.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++............
T Consensus 1 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 80 (255)
T PRK07260 1 FEHIIYEVEDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQSL 80 (255)
T ss_pred CCceEEEEECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhhH
Confidence 35688999999999999999999999999999999999999999999999999999999999999988643211122222
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchH-HH
Q 016955 91 KECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHL-GE 169 (380)
Q Consensus 91 ~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~-a~ 169 (380)
..+.+.+++++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus 81 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~ 160 (255)
T PRK07260 81 VKIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNRAT 160 (255)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHHHH
Confidence 33445566788899999999999999999999999999999999999999999999999999999999999999998 99
Q ss_pred HHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCCCC
Q 016955 170 YLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGHDT 249 (380)
Q Consensus 170 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 249 (380)
+|+++|++++|+||+++||||+++|++++.+
T Consensus 161 ~l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~------------------------------------------------- 191 (255)
T PRK07260 161 HLAMTGEALTAEKALEYGFVYRVAESEKLEK------------------------------------------------- 191 (255)
T ss_pred HHHHhCCccCHHHHHHcCCcceecCHhHHHH-------------------------------------------------
Confidence 9999999999999999999999999876632
Q ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhhhhhh
Q 016955 250 VEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEGVRTR 329 (380)
Q Consensus 250 ~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~egv~a~ 329 (380)
.+.+++++|++.||.+++.+|++++.....++++.+..|...+..+ +.++|++||+++|
T Consensus 192 ------------------~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~---~~~~~~~e~~~af 250 (255)
T PRK07260 192 ------------------TCEQLLKKLRRGSSNSYAAIKSLVWESFFKGWEDYAKLELALQESL---AFKEDFKEGVRAF 250 (255)
T ss_pred ------------------HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH---hcCHHHHHHHHHH
Confidence 2236689999999999999999999888889999999999988888 7799999999999
Q ss_pred cc
Q 016955 330 LV 331 (380)
Q Consensus 330 l~ 331 (380)
++
T Consensus 251 ~~ 252 (255)
T PRK07260 251 SE 252 (255)
T ss_pred Hh
Confidence 96
No 47
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1e-50 Score=382.78 Aligned_cols=256 Identities=23% Similarity=0.288 Sum_probs=224.2
Q ss_pred CCCcEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHH
Q 016955 10 ADNMVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEE 89 (380)
Q Consensus 10 ~~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 89 (380)
|++.+.++++++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++.... ......
T Consensus 1 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~-~~~~~~ 79 (262)
T PRK07509 1 MMDRVSVTIEDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSP-GNAVKL 79 (262)
T ss_pred CCceEEEEeeCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhccc-chhhhh
Confidence 4568999999999999999999999999999999999999999999999999999999999999999875421 111111
Q ss_pred HH----HHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCc
Q 016955 90 CK----ECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPG 165 (380)
Q Consensus 90 ~~----~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g 165 (380)
.. .....+..++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g 159 (262)
T PRK07509 80 LFKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVR 159 (262)
T ss_pred HhhhhHHHHHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHhC
Confidence 11 11223455677788999999999999999999999999999999999999999999999999999999999999
Q ss_pred hH-HHHHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhh
Q 016955 166 HL-GEYLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKC 244 (380)
Q Consensus 166 ~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 244 (380)
.. +++|++||++++|+||+++||||+++++ + ..+
T Consensus 160 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~--~--~~~----------------------------------------- 194 (262)
T PRK07509 160 KDVARELTYTARVFSAEEALELGLVTHVSDD--P--LAA----------------------------------------- 194 (262)
T ss_pred HHHHHHHHHcCCCcCHHHHHHcCChhhhhch--H--HHH-----------------------------------------
Confidence 99 9999999999999999999999999853 2 111
Q ss_pred hCCCCHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHh
Q 016955 245 FGHDTVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCE 324 (380)
Q Consensus 245 f~~~~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~e 324 (380)
+.+++++|++.||.+++.+|++++.....++.+++..|...+..+ +.++|++|
T Consensus 195 ------------------------a~~~a~~l~~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~---~~~~d~~e 247 (262)
T PRK07509 195 ------------------------ALALAREIAQRSPDAIAAAKRLINRSWTASVRALLARESVEQIRL---LLGKNQKI 247 (262)
T ss_pred ------------------------HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---hcChhHHH
Confidence 236789999999999999999999888888999999999988888 67999999
Q ss_pred hhhhhcccCCCCCCCC
Q 016955 325 GVRTRLVEKSFAPKWD 340 (380)
Q Consensus 325 gv~a~l~~k~r~P~w~ 340 (380)
|+++|++ | |+|.|+
T Consensus 248 ~~~af~e-k-r~p~~~ 261 (262)
T PRK07509 248 AVKAQMK-K-RAPKFL 261 (262)
T ss_pred HHHHHhc-C-CCCCCC
Confidence 9999996 5 789886
No 48
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.8e-51 Score=383.39 Aligned_cols=253 Identities=26% Similarity=0.365 Sum_probs=220.0
Q ss_pred CCCcEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCC-CccccccCchHHHHHhccCCHH
Q 016955 10 ADNMVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNG-RSFCAGGDVVTLYRLLSKGRVE 88 (380)
Q Consensus 10 ~~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g-~~F~~G~Dl~~~~~~~~~~~~~ 88 (380)
..+.+.++++++|++|+||||+++|++|.+|+.+|.+++++++.|+++++|||+|.| ++||+|+|++++.... ...
T Consensus 6 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~---~~~ 82 (262)
T PRK06144 6 STDELLLEVRGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFS---TAE 82 (262)
T ss_pred CCCceEEEeeCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhcc---chh
Confidence 456789999999999999999999999999999999999999999999999999998 7999999999875421 112
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEeccccc-ccccCCCchhHHHhhcCchH
Q 016955 89 ECKECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVL-IGSHPDAGASYYLSHLPGHL 167 (380)
Q Consensus 89 ~~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~-~G~~p~~g~~~~L~r~~g~~ 167 (380)
....+...+..++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||++ +|++|++|++++|++++|..
T Consensus 83 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~ 162 (262)
T PRK06144 83 DAVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAA 162 (262)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCHH
Confidence 22234455667888899999999999999999999999999999999999999999997 99999999999999999999
Q ss_pred -HHHHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhC
Q 016955 168 -GEYLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFG 246 (380)
Q Consensus 168 -a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~ 246 (380)
+++++++|++++|+||+++||||+++|++++. ++
T Consensus 163 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~--~~------------------------------------------- 197 (262)
T PRK06144 163 RVKDMLFTARLLEAEEALAAGLVNEVVEDAALD--AR------------------------------------------- 197 (262)
T ss_pred HHHHHHHcCCCcCHHHHHHcCCcCeecCHHHHH--HH-------------------------------------------
Confidence 99999999999999999999999999987662 12
Q ss_pred CCCHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhhh
Q 016955 247 HDTVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEGV 326 (380)
Q Consensus 247 ~~~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~egv 326 (380)
+.+++++|++.||.+++.+|++++......+. .+...+..+ +.++|++||+
T Consensus 198 ----------------------a~~~a~~i~~~~~~a~~~~K~~l~~~~~~~l~----~~~~~~~~~---~~~~~~~e~~ 248 (262)
T PRK06144 198 ----------------------ADALAELLAAHAPLTLRATKEALRRLRREGLP----DGDDLIRMC---YMSEDFREGV 248 (262)
T ss_pred ----------------------HHHHHHHHHhCCHHHHHHHHHHHHHhhhcCHH----HHHHHHHHH---hcChHHHHHH
Confidence 23678999999999999999999876554443 344455555 6799999999
Q ss_pred hhhcccCCCCCCCCC
Q 016955 327 RTRLVEKSFAPKWDP 341 (380)
Q Consensus 327 ~a~l~~k~r~P~w~~ 341 (380)
++|++ | |+|.|.+
T Consensus 249 ~af~~-k-r~p~~~~ 261 (262)
T PRK06144 249 EAFLE-K-RPPKWKG 261 (262)
T ss_pred HHHhc-C-CCCCCCC
Confidence 99996 5 7899975
No 49
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=100.00 E-value=6.5e-51 Score=383.61 Aligned_cols=256 Identities=18% Similarity=0.236 Sum_probs=223.5
Q ss_pred CCCCcEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeC-C-CccccccCchHHHHHhccCC
Q 016955 9 DADNMVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGN-G-RSFCAGGDVVTLYRLLSKGR 86 (380)
Q Consensus 9 ~~~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~-g-~~F~~G~Dl~~~~~~~~~~~ 86 (380)
|.++.+.++++++|++||||||+++|++|.+|+.+|.++++.++.|+ +++|||||. | ++||+|+|++++.... ..
T Consensus 1 ~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~--~~ 77 (261)
T PRK11423 1 MSMQYVNVVTINKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGG--RD 77 (261)
T ss_pred CCccceEEEeECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhcc--cc
Confidence 35668999999999999999999999999999999999999999887 999999996 3 8999999999875321 01
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCch
Q 016955 87 VEECKECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGH 166 (380)
Q Consensus 87 ~~~~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~ 166 (380)
. ..+...+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|.
T Consensus 78 ~---~~~~~~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~ 154 (261)
T PRK11423 78 P---LSYDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGF 154 (261)
T ss_pred H---HHHHHHHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHH
Confidence 1 1233455678889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhh
Q 016955 167 L-GEYLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCF 245 (380)
Q Consensus 167 ~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f 245 (380)
. +++|+++|++++|+||+++||||+|||++++..
T Consensus 155 ~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~--------------------------------------------- 189 (261)
T PRK11423 155 HIVKEMFFTASPITAQRALAVGILNHVVEVEELED--------------------------------------------- 189 (261)
T ss_pred HHHHHHHHcCCCcCHHHHHHcCCcCcccCHHHHHH---------------------------------------------
Confidence 9 999999999999999999999999999876632
Q ss_pred CCCCHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhh-CCH-HHHHHHHHHHHHHHhhhCCCCcHH
Q 016955 246 GHDTVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARF-ETL-EECLKREYRMSMRMISRQISNDFC 323 (380)
Q Consensus 246 ~~~~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~-~~l-~~~l~~e~~~~~~~~~~~~~~d~~ 323 (380)
.+.+++++|++.||.+++.+|++++.... ..+ .+.++.|......+ +.++|++
T Consensus 190 ----------------------~a~~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~s~d~~ 244 (261)
T PRK11423 190 ----------------------FTLQMAHHISEKAPLAIAVIKEQLRVLGEAHPMNPDEFERIQGLRRAV---YDSEDYQ 244 (261)
T ss_pred ----------------------HHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHH---hCChhHH
Confidence 23467899999999999999999986543 234 57888888887777 7799999
Q ss_pred hhhhhhcccCCCCCCCCCC
Q 016955 324 EGVRTRLVEKSFAPKWDPP 342 (380)
Q Consensus 324 egv~a~l~~k~r~P~w~~~ 342 (380)
||+.+|++ | |.|+|+.+
T Consensus 245 eg~~af~~-k-r~p~~~~~ 261 (261)
T PRK11423 245 EGMNAFLE-K-RKPVFVGH 261 (261)
T ss_pred HHHHHHhc-c-CCCCCCCC
Confidence 99999996 5 79999753
No 50
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.1e-51 Score=389.66 Aligned_cols=260 Identities=22% Similarity=0.282 Sum_probs=220.7
Q ss_pred CCCcEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhcc-----
Q 016955 10 ADNMVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSK----- 84 (380)
Q Consensus 10 ~~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~----- 84 (380)
.++.|.++++++|++||||||++.|+||.+|+.+|.++|+.++.|+++++|||||.|++||+|+|++++......
T Consensus 2 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (296)
T PRK08260 2 TYETIRYDVADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRT 81 (296)
T ss_pred CcceEEEeeeCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhccccccccc
Confidence 356789999999999999999999999999999999999999999999999999999999999999987431100
Q ss_pred --------CCHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCch
Q 016955 85 --------GRVEECKECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGA 156 (380)
Q Consensus 85 --------~~~~~~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~ 156 (380)
........+......++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~ 161 (296)
T PRK08260 82 PVEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEAAS 161 (296)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCcch
Confidence 000111223333456788899999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhcCchH-HHHHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhh
Q 016955 157 SYYLSHLPGHL-GEYLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSIL 235 (380)
Q Consensus 157 ~~~L~r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (380)
+++|++++|.. +++|+++|++++|+||+++||||++||++++. .++
T Consensus 162 ~~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~l~--~~a------------------------------- 208 (296)
T PRK08260 162 SWFLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPPDELL--PAA------------------------------- 208 (296)
T ss_pred hhhHHHhhCHHHHHHHHHcCCccCHHHHHHCCCceeecCHHHHH--HHH-------------------------------
Confidence 99999999999 99999999999999999999999999987652 222
Q ss_pred hhHHHHhhhhCCCCHHHHHHHHHhcccccchHHHHHHHHHHHhc-CchHHHHHHHHHHHHhh--CCHHHHHHHHHHHHHH
Q 016955 236 HRVETLNKCFGHDTVEEIIGALESEVAETNDEWCLSTLKKLREA-PPLSLKISLKSIQKARF--ETLEECLKREYRMSMR 312 (380)
Q Consensus 236 ~~~~~i~~~f~~~~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~-sp~al~~tk~~l~~~~~--~~l~~~l~~e~~~~~~ 312 (380)
.+++++|+.. ||.+++.+|++++.... ..+. ....|...+..
T Consensus 209 ----------------------------------~~~a~~i~~~~~~~a~~~~K~~l~~~~~~~~~~~-~~~~e~~~~~~ 253 (296)
T PRK08260 209 ----------------------------------RALAREIADNTSPVSVALTRQMMWRMAGADHPME-AHRVDSRAIYS 253 (296)
T ss_pred ----------------------------------HHHHHHHHhcCChHHHHHHHHHHHhcccCCCcHH-HHHHHHHHHHH
Confidence 3668899985 99999999999997642 2344 33556666666
Q ss_pred HhhhCCCCcHHhhhhhhcccCCCCCCCCCC
Q 016955 313 MISRQISNDFCEGVRTRLVEKSFAPKWDPP 342 (380)
Q Consensus 313 ~~~~~~~~d~~egv~a~l~~k~r~P~w~~~ 342 (380)
+ +.++|++||+++|++ | |+|.|+++
T Consensus 254 ~---~~~~d~~egi~af~~-k-r~p~f~~~ 278 (296)
T PRK08260 254 R---GRSGDGKEGVSSFLE-K-RPAVFPGK 278 (296)
T ss_pred H---ccChhHHHHHHHHhc-C-CCCCCCCC
Confidence 6 679999999999996 5 79999876
No 51
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.9e-50 Score=377.74 Aligned_cols=247 Identities=23% Similarity=0.358 Sum_probs=220.4
Q ss_pred EEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHH
Q 016955 14 VLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKEC 93 (380)
Q Consensus 14 v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~ 93 (380)
|.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++... . ...+
T Consensus 2 i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~----~---~~~~ 74 (248)
T PRK06072 2 IKVESREGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPD----F---AIDL 74 (248)
T ss_pred eEEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhh----h---HHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999987532 1 1223
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchHHHHHhh
Q 016955 94 FRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHLGEYLGL 173 (380)
Q Consensus 94 ~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~a~~l~l 173 (380)
...++.++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|..++++++
T Consensus 75 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~~a~~lll 154 (248)
T PRK06072 75 RETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQRFYEILV 154 (248)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhHHHHHHHH
Confidence 34456778889999999999999999999999999999999999999999999999999999999999999966999999
Q ss_pred cCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCCCCHHHH
Q 016955 174 TGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGHDTVEEI 253 (380)
Q Consensus 174 tG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~i 253 (380)
||++++|+||+++||||++ +++ +.+
T Consensus 155 ~g~~~~a~eA~~~Glv~~~---~~~--~~~-------------------------------------------------- 179 (248)
T PRK06072 155 LGGEFTAEEAERWGLLKIS---EDP--LSD-------------------------------------------------- 179 (248)
T ss_pred hCCccCHHHHHHCCCcccc---chH--HHH--------------------------------------------------
Confidence 9999999999999999953 222 222
Q ss_pred HHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhhhhhhcccC
Q 016955 254 IGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEGVRTRLVEK 333 (380)
Q Consensus 254 ~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~egv~a~l~~k 333 (380)
|.+++++|++.||.+++.+|+++++....++++.++.|...+..+ +.++|++||+++|++ |
T Consensus 180 ---------------a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~---~~~~d~~eg~~af~~-k 240 (248)
T PRK06072 180 ---------------AEEMANRISNGPFQSYIAAKRMINLVLYNDLEEFLEYESAIQGYL---GKTEDFKEGISSFKE-K 240 (248)
T ss_pred ---------------HHHHHHHHHhCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH---hCChhHHHHHHHHhc-C
Confidence 236789999999999999999999887888999999999988888 679999999999996 5
Q ss_pred CCCCCCCCC
Q 016955 334 SFAPKWDPP 342 (380)
Q Consensus 334 ~r~P~w~~~ 342 (380)
|+|.|+++
T Consensus 241 -r~p~~~~~ 248 (248)
T PRK06072 241 -REPKFKGI 248 (248)
T ss_pred -CCCCCCCC
Confidence 79999864
No 52
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.3e-51 Score=381.81 Aligned_cols=249 Identities=23% Similarity=0.278 Sum_probs=216.1
Q ss_pred CCcEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHH
Q 016955 11 DNMVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEEC 90 (380)
Q Consensus 11 ~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 90 (380)
.+.|.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++.... . ...
T Consensus 2 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~---~-~~~ 77 (254)
T PRK08259 2 SMSVRVERNGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGR---G-NRL 77 (254)
T ss_pred CceEEEEEECCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhccc---c-hhh
Confidence 456889999999999999999999999999999999999999999999999999999999999999875321 1 111
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchH-HH
Q 016955 91 KECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHL-GE 169 (380)
Q Consensus 91 ~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~-a~ 169 (380)
... ....+...+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus 78 ~~~--~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~ 155 (254)
T PRK08259 78 HPS--GDGPMGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAM 155 (254)
T ss_pred hhh--hcchhhhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHHH
Confidence 110 001112223479999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCCCC
Q 016955 170 YLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGHDT 249 (380)
Q Consensus 170 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 249 (380)
+|+++|++++|+||+++||||++||++++.. +
T Consensus 156 ~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~--~---------------------------------------------- 187 (254)
T PRK08259 156 DLILTGRPVDADEALAIGLANRVVPKGQARA--A---------------------------------------------- 187 (254)
T ss_pred HHHHcCCccCHHHHHHcCCCCEeeChhHHHH--H----------------------------------------------
Confidence 9999999999999999999999999887632 2
Q ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhhhhhh
Q 016955 250 VEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEGVRTR 329 (380)
Q Consensus 250 ~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~egv~a~ 329 (380)
|.+++++|++.||.+++.+|+++++....++.+++..|...+... +. +|++||+++|
T Consensus 188 -------------------a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~---~~-~d~~egi~af 244 (254)
T PRK08259 188 -------------------AEELAAELAAFPQTCLRADRLSALEQWGLPEEAALANEFAHGLAV---LA-AEALEGAARF 244 (254)
T ss_pred -------------------HHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH---Hh-hHHHHHHHHH
Confidence 236789999999999999999999887778999999998876666 55 9999999999
Q ss_pred cccCCCCC
Q 016955 330 LVEKSFAP 337 (380)
Q Consensus 330 l~~k~r~P 337 (380)
+++| |+|
T Consensus 245 ~~~~-~~~ 251 (254)
T PRK08259 245 AAGA-GRH 251 (254)
T ss_pred Hhhh-ccc
Confidence 9866 555
No 53
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=100.00 E-value=2.6e-50 Score=381.88 Aligned_cols=257 Identities=19% Similarity=0.285 Sum_probs=219.6
Q ss_pred CCCcEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCC-CccccccCchHHHHHhccCCHH
Q 016955 10 ADNMVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNG-RSFCAGGDVVTLYRLLSKGRVE 88 (380)
Q Consensus 10 ~~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g-~~F~~G~Dl~~~~~~~~~~~~~ 88 (380)
.++.+.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++...... ...
T Consensus 11 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~-~~~ 89 (273)
T PRK07396 11 EYEDILYKSADGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYV-DDD 89 (273)
T ss_pred CCcceEEEecCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhccccc-chh
Confidence 467899999999999999999999999999999999999999999999999999999 699999999986421100 111
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchH-
Q 016955 89 ECKECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHL- 167 (380)
Q Consensus 89 ~~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~- 167 (380)
....+ ....++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 90 ~~~~~--~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~ 167 (273)
T PRK07396 90 GVPRL--NVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKK 167 (273)
T ss_pred hhhhh--HHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHHH
Confidence 11111 234567788999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCC
Q 016955 168 GEYLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGH 247 (380)
Q Consensus 168 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 247 (380)
+++|++||++++|+||+++||||+|||++++.. +
T Consensus 168 a~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~--~-------------------------------------------- 201 (273)
T PRK07396 168 AREIWFLCRQYDAQEALDMGLVNTVVPLADLEK--E-------------------------------------------- 201 (273)
T ss_pred HHHHHHhCCCcCHHHHHHcCCcCeecCHHHHHH--H--------------------------------------------
Confidence 999999999999999999999999999876531 2
Q ss_pred CCHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhhhh
Q 016955 248 DTVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEGVR 327 (380)
Q Consensus 248 ~~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~egv~ 327 (380)
+.+++++|+..||.+++.+|++++.... .+....+.|...+..+ +.++|++||+.
T Consensus 202 ---------------------a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~---~~~~d~~egi~ 256 (273)
T PRK07396 202 ---------------------TVRWCREMLQNSPMALRCLKAALNADCD-GQAGLQELAGNATMLF---YMTEEAQEGRN 256 (273)
T ss_pred ---------------------HHHHHHHHHhCCHHHHHHHHHHHHhhhc-cHHHHHHHHHHHHHHH---hcChhHHHHHH
Confidence 2367899999999999999999987644 4555555666666666 67999999999
Q ss_pred hhcccCCCCCCCCCC
Q 016955 328 TRLVEKSFAPKWDPP 342 (380)
Q Consensus 328 a~l~~k~r~P~w~~~ 342 (380)
+|++ | |+|+|...
T Consensus 257 af~~-k-r~p~~~~~ 269 (273)
T PRK07396 257 AFNE-K-RQPDFSKF 269 (273)
T ss_pred HHhC-C-CCCCCCCC
Confidence 9996 5 78999863
No 54
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=100.00 E-value=2.6e-50 Score=378.97 Aligned_cols=253 Identities=32% Similarity=0.440 Sum_probs=224.9
Q ss_pred CCCcEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHH
Q 016955 10 ADNMVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEE 89 (380)
Q Consensus 10 ~~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 89 (380)
.+..+.++..++|++||||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|+..+.. . . ....
T Consensus 3 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~-~-~-~~~~ 79 (257)
T COG1024 3 TYETILVEREDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLS-P-E-DGNA 79 (257)
T ss_pred CCCeeEEEeeCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhc-c-c-chhH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999875 1 1 1122
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchH-H
Q 016955 90 CKECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHL-G 168 (380)
Q Consensus 90 ~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~-a 168 (380)
...++...+.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.. +
T Consensus 80 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a 159 (257)
T COG1024 80 AENLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRA 159 (257)
T ss_pred HHHHHhHHHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHH
Confidence 225667778899999999999999999999999999999999999999999999999999999889999999999999 9
Q ss_pred HHHhhcCCCcCHHHHHHcCCcccccCC-CChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCC
Q 016955 169 EYLGLTGGRLSGEELLACGFATHYIPS-ARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGH 247 (380)
Q Consensus 169 ~~l~ltG~~i~a~eA~~~GLv~~vv~~-~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 247 (380)
.+|++||+.++|+||+++|||+++++. +++.. .
T Consensus 160 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~--~-------------------------------------------- 193 (257)
T COG1024 160 KELLLTGEPISAAEALELGLVDEVVPDAEELLE--R-------------------------------------------- 193 (257)
T ss_pred HHHHHcCCcCCHHHHHHcCCcCeeeCCHHHHHH--H--------------------------------------------
Confidence 999999999999999999999999986 35521 1
Q ss_pred CCHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhhhh
Q 016955 248 DTVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEGVR 327 (380)
Q Consensus 248 ~~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~egv~ 327 (380)
|.+++++++. ||.+++.+|+.++......+.+.+..+...+... +.++|++||++
T Consensus 194 ---------------------a~~~a~~~a~-~~~a~~~~k~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~d~~eg~~ 248 (257)
T COG1024 194 ---------------------ALELARRLAA-PPLALAATKRLVRAALEADLAEALEAEALAFARL---FSSEDFREGVR 248 (257)
T ss_pred ---------------------HHHHHHHHcc-CHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHH---hcChhHHHHHH
Confidence 1245666666 9999999999999887777999999998888875 67999999999
Q ss_pred hhcccCCCCCCC
Q 016955 328 TRLVEKSFAPKW 339 (380)
Q Consensus 328 a~l~~k~r~P~w 339 (380)
+|++ |+|.|
T Consensus 249 a~~~---r~p~~ 257 (257)
T COG1024 249 AFLE---RKPVF 257 (257)
T ss_pred HHHc---cCCCC
Confidence 9997 68887
No 55
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=100.00 E-value=3.8e-50 Score=376.20 Aligned_cols=245 Identities=20% Similarity=0.295 Sum_probs=213.7
Q ss_pred EEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHH
Q 016955 14 VLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKEC 93 (380)
Q Consensus 14 v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~ 93 (380)
|.++++++|++||||||+ .|+||.+|+.+|.++++.++.|+++++|||||.|++||+|.|+.++.. . ....+
T Consensus 3 v~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~-----~--~~~~~ 74 (251)
T TIGR03189 3 VWLERDGKLLRLRLARPK-ANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMP-----D--QCAAM 74 (251)
T ss_pred EEEEeeCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCc-----h--hHHHH
Confidence 678889999999999997 599999999999999999999999999999999999999999987531 1 11223
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchH-HHHHh
Q 016955 94 FRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHL-GEYLG 172 (380)
Q Consensus 94 ~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~-a~~l~ 172 (380)
......++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ |++++|++++|.. +++|+
T Consensus 75 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~-~~~~~l~~~vg~~~a~~l~ 153 (251)
T TIGR03189 75 LASLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAP-AASCLLPERMGRVAAEDLL 153 (251)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCC-chHHHHHHHhCHHHHHHHH
Confidence 445567888899999999999999999999999999999999999999999999999997 4678999999999 99999
Q ss_pred hcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCCCCHHH
Q 016955 173 LTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGHDTVEE 252 (380)
Q Consensus 173 ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~ 252 (380)
+||++++|+||+++|||++++++.+ .+++
T Consensus 154 ltg~~~~a~eA~~~Glv~~v~~~~~----~~a~----------------------------------------------- 182 (251)
T TIGR03189 154 YSGRSIDGAEGARIGLANAVAEDPE----NAAL----------------------------------------------- 182 (251)
T ss_pred HcCCCCCHHHHHHCCCcceecCcHH----HHHH-----------------------------------------------
Confidence 9999999999999999999997532 1111
Q ss_pred HHHHHHhcccccchHHHHH-HHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHH-HHHHHHHHHhhhCCCCcHHhhhhhhc
Q 016955 253 IIGALESEVAETNDEWCLS-TLKKLREAPPLSLKISLKSIQKARFETLEECLK-REYRMSMRMISRQISNDFCEGVRTRL 330 (380)
Q Consensus 253 i~~~L~~~~~~~~~~~a~~-~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~-~e~~~~~~~~~~~~~~d~~egv~a~l 330 (380)
+ ++++|++.||.+++.+|++++.....++++.+. .|...+..+ +.++|++||+++|+
T Consensus 183 ------------------~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~---~~s~d~~eg~~af~ 241 (251)
T TIGR03189 183 ------------------AWFDEHPAKLSASSLRFAVRAARLGMNERVKAKIAEVEALYLEEL---MATHDAVEGLNAFL 241 (251)
T ss_pred ------------------HHHHHHHHhCCHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH---hCCHhHHHHHHHHH
Confidence 2 258899999999999999999887778887764 676667777 67999999999999
Q ss_pred ccCCCCCCCCC
Q 016955 331 VEKSFAPKWDP 341 (380)
Q Consensus 331 ~~k~r~P~w~~ 341 (380)
+ | |+|.|.+
T Consensus 242 e-k-r~p~~~~ 250 (251)
T TIGR03189 242 E-K-RPALWED 250 (251)
T ss_pred h-c-CCCCCCC
Confidence 6 5 7899975
No 56
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.6e-50 Score=378.54 Aligned_cols=246 Identities=22% Similarity=0.291 Sum_probs=219.6
Q ss_pred CCCcEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHH
Q 016955 10 ADNMVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEE 89 (380)
Q Consensus 10 ~~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 89 (380)
|+..+.++++++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++...... .
T Consensus 1 m~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~-~--- 76 (249)
T PRK05870 1 MMDPVLLDVDDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGR-P--- 76 (249)
T ss_pred CCccEEEEccCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhccccc-c---
Confidence 345688999999999999999999999999999999999999999999999999999999999999987642111 1
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchH-H
Q 016955 90 CKECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHL-G 168 (380)
Q Consensus 90 ~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~-a 168 (380)
....+..++.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 77 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a 156 (249)
T PRK05870 77 AEDGLRRIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVA 156 (249)
T ss_pred hHHHHHHHHHHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHHHH
Confidence 123344556677889999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred HHHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCCC
Q 016955 169 EYLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGHD 248 (380)
Q Consensus 169 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 248 (380)
++|++||++++|+||+++||||+++ +++. .+
T Consensus 157 ~~l~ltg~~~~a~eA~~~Glv~~vv--~~l~--~~--------------------------------------------- 187 (249)
T PRK05870 157 RAALLFGMRFDAEAAVRHGLALMVA--DDPV--AA--------------------------------------------- 187 (249)
T ss_pred HHHHHhCCccCHHHHHHcCCHHHHH--hhHH--HH---------------------------------------------
Confidence 9999999999999999999999999 4442 12
Q ss_pred CHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHhhhCCCCcHHhhhh
Q 016955 249 TVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARF-ETLEECLKREYRMSMRMISRQISNDFCEGVR 327 (380)
Q Consensus 249 ~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~-~~l~~~l~~e~~~~~~~~~~~~~~d~~egv~ 327 (380)
+.+++++|++.||.+++.+|++++.... .+++++++.|...+... +.++|++||++
T Consensus 188 --------------------a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~l~~~~~~e~~~~~~~---~~~~d~~eg~~ 244 (249)
T PRK05870 188 --------------------ALELAAGPAAAPRELVLATKASMRATASLAQHAAAVEFELGPQAAS---VQSPEFAARLA 244 (249)
T ss_pred --------------------HHHHHHHHHhCCHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHH---hcChhHHHHHH
Confidence 2367899999999999999999998877 78999999999988888 77999999999
Q ss_pred hhcc
Q 016955 328 TRLV 331 (380)
Q Consensus 328 a~l~ 331 (380)
+|++
T Consensus 245 af~~ 248 (249)
T PRK05870 245 AAQR 248 (249)
T ss_pred HHhc
Confidence 9996
No 57
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.6e-50 Score=372.96 Aligned_cols=240 Identities=22% Similarity=0.290 Sum_probs=214.5
Q ss_pred EEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHH
Q 016955 14 VLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKEC 93 (380)
Q Consensus 14 v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~ 93 (380)
|.++++++|++||||||+++|++|.+|+.+|.++++.++.+ ++++|||||.|++||+|+|++.... ...+
T Consensus 2 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~~~---------~~~~ 71 (243)
T PRK07854 2 IGVTRDGQVLTIELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGDVY---------ADDF 71 (243)
T ss_pred ceEEEeCCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECCCCceecccCCccchh---------HHHH
Confidence 67888999999999999999999999999999999999864 8999999999999999999985211 1123
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchH-HHHHh
Q 016955 94 FRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHL-GEYLG 172 (380)
Q Consensus 94 ~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~-a~~l~ 172 (380)
...+..++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|+. +++|+
T Consensus 72 ~~~~~~~~~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ 151 (243)
T PRK07854 72 PDALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAML 151 (243)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHH
Confidence 34456778889999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred hcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCCCCHHH
Q 016955 173 LTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGHDTVEE 252 (380)
Q Consensus 173 ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~ 252 (380)
+||++++|+||+++|||++|++ ++ ++
T Consensus 152 ltg~~~~a~eA~~~Glv~~v~~---~~---~a------------------------------------------------ 177 (243)
T PRK07854 152 LGAEKLTAEQALATGMANRIGT---LA---DA------------------------------------------------ 177 (243)
T ss_pred HcCCCcCHHHHHHCCCcccccC---HH---HH------------------------------------------------
Confidence 9999999999999999999964 21 22
Q ss_pred HHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhhhhhhccc
Q 016955 253 IIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEGVRTRLVE 332 (380)
Q Consensus 253 i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~egv~a~l~~ 332 (380)
.+++++|++.||.+++.+|+++++. ..++++++.|...+..+ +.++|++||+++|++
T Consensus 178 -----------------~~~a~~l~~~~~~a~~~~K~~l~~~--~~~~~~~~~e~~~~~~~---~~~~d~~eg~~af~~- 234 (243)
T PRK07854 178 -----------------QAWAAEIAGLAPLALQHAKRVLNDD--GAIEEAWPAHKELFDKA---WASQDAIEAQVARIE- 234 (243)
T ss_pred -----------------HHHHHHHHhCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHH---hcCchHHHHHHHHhC-
Confidence 2568999999999999999999865 57899999998888887 679999999999996
Q ss_pred CCCCCCCCC
Q 016955 333 KSFAPKWDP 341 (380)
Q Consensus 333 k~r~P~w~~ 341 (380)
| |+|.|++
T Consensus 235 k-r~p~~~~ 242 (243)
T PRK07854 235 K-RPPKFQG 242 (243)
T ss_pred C-CCCCCCC
Confidence 5 7899975
No 58
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.3e-50 Score=376.89 Aligned_cols=244 Identities=23% Similarity=0.311 Sum_probs=216.1
Q ss_pred CcEEEEEcCc---EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHH
Q 016955 12 NMVLVEEGAS---SRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVE 88 (380)
Q Consensus 12 ~~v~~~~~~~---v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~ 88 (380)
+.|.++++++ |++||||||++.|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++..... ..
T Consensus 3 ~~i~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~-~~-- 79 (251)
T PRK06023 3 DHILVERPGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAM-GG-- 79 (251)
T ss_pred ceEEEEeecCcCcEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccc-cc--
Confidence 3688888774 99999999999999999999999999999999999999999999999999999998754211 11
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchH-
Q 016955 89 ECKECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHL- 167 (380)
Q Consensus 89 ~~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~- 167 (380)
..+...+..++..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|+++++++++|..
T Consensus 80 --~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~ 157 (251)
T PRK06023 80 --TSFGSEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQR 157 (251)
T ss_pred --hhhHHHHHHHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhHHH
Confidence 11233445678889999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCC
Q 016955 168 GEYLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGH 247 (380)
Q Consensus 168 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 247 (380)
+++++++|++++|+||+++|||++++|.+++. .+
T Consensus 158 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~--~~-------------------------------------------- 191 (251)
T PRK06023 158 AFALLALGEGFSAEAAQEAGLIWKIVDEEAVE--AE-------------------------------------------- 191 (251)
T ss_pred HHHHHHhCCCCCHHHHHHcCCcceeeCHHHHH--HH--------------------------------------------
Confidence 99999999999999999999999999987663 12
Q ss_pred CCHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhhhh
Q 016955 248 DTVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEGVR 327 (380)
Q Consensus 248 ~~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~egv~ 327 (380)
+.+++++|+..||.+++.+|++++... ..+.+.++.|...+..+ +.++|++||++
T Consensus 192 ---------------------a~~~a~~l~~~~~~a~~~~K~~l~~~~-~~l~~~~~~e~~~~~~~---~~~~~~~e~~~ 246 (251)
T PRK06023 192 ---------------------TLKAAEELAAKPPQALQIARDLMRGPR-EDILARIDEEAKHFAAR---LKSAEARAAFE 246 (251)
T ss_pred ---------------------HHHHHHHHHhCCHHHHHHHHHHHHhch-hhHHHHHHHHHHHHHHH---hCCHHHHHHHH
Confidence 236789999999999999999998764 46888888888887777 67999999999
Q ss_pred hhcc
Q 016955 328 TRLV 331 (380)
Q Consensus 328 a~l~ 331 (380)
+|++
T Consensus 247 af~e 250 (251)
T PRK06023 247 AFMR 250 (251)
T ss_pred HHhc
Confidence 9995
No 59
>PLN02888 enoyl-CoA hydratase
Probab=100.00 E-value=9.6e-50 Score=376.33 Aligned_cols=254 Identities=21% Similarity=0.319 Sum_probs=220.9
Q ss_pred CCCcEEEEE-cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHH
Q 016955 10 ADNMVLVEE-GASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVE 88 (380)
Q Consensus 10 ~~~~v~~~~-~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~ 88 (380)
+.+.|.+++ +++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++.+.. .+..
T Consensus 7 ~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~-~~~~- 84 (265)
T PLN02888 7 SENLILVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVF-KGDV- 84 (265)
T ss_pred CCCeEEEEeccCCEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhc-cchh-
Confidence 456788886 7899999999999999999999999999999999999999999999999999999999865321 1111
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchH-
Q 016955 89 ECKECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHL- 167 (380)
Q Consensus 89 ~~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~- 167 (380)
. .....++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 85 --~---~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~ 159 (265)
T PLN02888 85 --K---DVETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANR 159 (265)
T ss_pred --h---HHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHHH
Confidence 1 1123566778899999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCC
Q 016955 168 GEYLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGH 247 (380)
Q Consensus 168 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 247 (380)
+++|++||++++|+||+++||||++||++++. .+
T Consensus 160 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~--~~-------------------------------------------- 193 (265)
T PLN02888 160 AREVSLTAMPLTAETAERWGLVNHVVEESELL--KK-------------------------------------------- 193 (265)
T ss_pred HHHHHHhCCccCHHHHHHcCCccEeeChHHHH--HH--------------------------------------------
Confidence 99999999999999999999999999987652 22
Q ss_pred CCHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhhhh
Q 016955 248 DTVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEGVR 327 (380)
Q Consensus 248 ~~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~egv~ 327 (380)
|.+++++|++.+|.+++.+|++++.....++.+++..|...+..++. +.++|++||++
T Consensus 194 ---------------------a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~-~~~~d~~e~~~ 251 (265)
T PLN02888 194 ---------------------AREVAEAIIKNNQGMVLRYKSVINDGLKLDLGHALQLEKERAHDYYN-GMTKEQFQKMQ 251 (265)
T ss_pred ---------------------HHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 23678999999999999999999988888899999999887766621 25899999999
Q ss_pred hhcccCCCCCCCC
Q 016955 328 TRLVEKSFAPKWD 340 (380)
Q Consensus 328 a~l~~k~r~P~w~ 340 (380)
+|++ | |+|+--
T Consensus 252 af~e-k-r~~~~~ 262 (265)
T PLN02888 252 EFIA-G-RSSKKP 262 (265)
T ss_pred HHHh-c-CCCCCC
Confidence 9996 4 566533
No 60
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-49 Score=375.39 Aligned_cols=255 Identities=23% Similarity=0.289 Sum_probs=223.9
Q ss_pred CCcEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHH
Q 016955 11 DNMVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEEC 90 (380)
Q Consensus 11 ~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 90 (380)
...+.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++..... ......
T Consensus 5 ~~~i~~~~~~~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-~~~~~~ 83 (260)
T PRK07827 5 DTLVRYAVDGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGG-DPYDAA 83 (260)
T ss_pred CcceEEEeeCCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhccc-CchhHH
Confidence 4568889999999999999999999999999999999999999999999999999999999999998754210 111122
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchHHHH
Q 016955 91 KECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHLGEY 170 (380)
Q Consensus 91 ~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~a~~ 170 (380)
..+...+..++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++++++++..+++
T Consensus 84 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~~~~a~~ 163 (260)
T PRK07827 84 VARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLSPRAAAR 163 (260)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhhHHHHHH
Confidence 34455667788999999999999999999999999999999999999999999999999999999999999986544999
Q ss_pred HhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCCCCH
Q 016955 171 LGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGHDTV 250 (380)
Q Consensus 171 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 250 (380)
|+++|++++|++|+++|||++++++ +. +
T Consensus 164 l~l~g~~~~a~eA~~~Glv~~v~~~--l~---~----------------------------------------------- 191 (260)
T PRK07827 164 YYLTGEKFGAAEAARIGLVTAAADD--VD---A----------------------------------------------- 191 (260)
T ss_pred HHHhCCccCHHHHHHcCCcccchHH--HH---H-----------------------------------------------
Confidence 9999999999999999999998642 31 1
Q ss_pred HHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhhhhhhc
Q 016955 251 EEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEGVRTRL 330 (380)
Q Consensus 251 ~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~egv~a~l 330 (380)
.+.+++++|++.||.+++.+|+++++.....+.+.++.|...+..+ +.++|+++|+++|+
T Consensus 192 -----------------~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~af~ 251 (260)
T PRK07827 192 -----------------AVAALLADLRRGSPQGLAESKALTTAAVLAGFDRDAEELTEESARL---FVSDEAREGMTAFL 251 (260)
T ss_pred -----------------HHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHH---hcChhHHHHHHHHh
Confidence 1236689999999999999999999988888999999998888887 67999999999999
Q ss_pred ccCCCCCCCC
Q 016955 331 VEKSFAPKWD 340 (380)
Q Consensus 331 ~~k~r~P~w~ 340 (380)
+ | |.|.|+
T Consensus 252 ~-k-r~p~~~ 259 (260)
T PRK07827 252 Q-K-RPPRWA 259 (260)
T ss_pred c-C-CCCCCC
Confidence 6 5 689985
No 61
>PLN02921 naphthoate synthase
Probab=100.00 E-value=2.2e-49 Score=382.69 Aligned_cols=258 Identities=20% Similarity=0.287 Sum_probs=217.3
Q ss_pred CCCCCcEEEEE--cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCC-CccccccCchHHHHHhcc
Q 016955 8 NDADNMVLVEE--GASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNG-RSFCAGGDVVTLYRLLSK 84 (380)
Q Consensus 8 ~~~~~~v~~~~--~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g-~~F~~G~Dl~~~~~~~~~ 84 (380)
...++.|.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++.+.... .
T Consensus 61 ~~~~~~i~~~~~~~~~Va~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~-~ 139 (327)
T PLN02921 61 GKEFTDIIYEKAVGEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDG-Y 139 (327)
T ss_pred ccCCceEEEEEecCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhccc-c
Confidence 34567899988 589999999999999999999999999999999999999999999999 8999999998764211 0
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcC
Q 016955 85 GRVEECKECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLP 164 (380)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~ 164 (380)
........+ ....++..|..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++
T Consensus 140 ~~~~~~~~~--~~~~l~~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rli 217 (327)
T PLN02921 140 VGPDDAGRL--NVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLV 217 (327)
T ss_pred cchhHHHHH--HHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHh
Confidence 011111111 123567788999999999999999999999999999999999999999999999999999999999999
Q ss_pred chH-HHHHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhh
Q 016955 165 GHL-GEYLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNK 243 (380)
Q Consensus 165 g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 243 (380)
|.. +++|+++|+.++|+||+++||||+++|.+++.. +
T Consensus 218 G~~~A~ellltG~~~~A~eA~~~GLV~~vv~~~~l~~--~---------------------------------------- 255 (327)
T PLN02921 218 GQKKAREMWFLARFYTASEALKMGLVNTVVPLDELEG--E---------------------------------------- 255 (327)
T ss_pred CHHHHHHHHHcCCcCCHHHHHHCCCceEEeCHHHHHH--H----------------------------------------
Confidence 998 999999999999999999999999999877632 2
Q ss_pred hhCCCCHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHH
Q 016955 244 CFGHDTVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFC 323 (380)
Q Consensus 244 ~f~~~~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~ 323 (380)
+.+++++|++.||.+++.+|++++..... .......+...+..+ +.++|++
T Consensus 256 -------------------------a~~~a~~la~~~p~al~~~K~~l~~~~~~-~~~~~~~~~~~~~~~---~~s~d~~ 306 (327)
T PLN02921 256 -------------------------TVKWCREILRNSPTAIRVLKSALNAADDG-HAGLQELGGNATLLF---YGSEEGN 306 (327)
T ss_pred -------------------------HHHHHHHHHccCHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHH---hcCHHHH
Confidence 23678999999999999999999976543 333333334555555 6799999
Q ss_pred hhhhhhcccCCCCCCCCC
Q 016955 324 EGVRTRLVEKSFAPKWDP 341 (380)
Q Consensus 324 egv~a~l~~k~r~P~w~~ 341 (380)
||+++|++ | |+|.|+.
T Consensus 307 egi~Af~e-k-r~p~f~~ 322 (327)
T PLN02921 307 EGRTAYLE-G-RAPDFSK 322 (327)
T ss_pred HHHHHHhc-c-CCCCCCC
Confidence 99999996 5 7999974
No 62
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-49 Score=371.51 Aligned_cols=242 Identities=20% Similarity=0.275 Sum_probs=212.0
Q ss_pred EEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHH
Q 016955 17 EEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRT 96 (380)
Q Consensus 17 ~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~ 96 (380)
+++++|++||||||++ |++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|+.++... ..........+.
T Consensus 7 ~~~~~v~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~---~~~~~~~~~~~~ 82 (249)
T PRK07938 7 TPEPGIAEVTVDYPPV-NALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQAT---PGFTALIDANRG 82 (249)
T ss_pred ccCCCEEEEEECCCCc-ccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhc---cchhHHHHHHHH
Confidence 4578999999999985 999999999999999999999999999999999999999999987532 111222223344
Q ss_pred HHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchH-HHHHhhcC
Q 016955 97 FYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHL-GEYLGLTG 175 (380)
Q Consensus 97 ~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~-a~~l~ltG 175 (380)
...++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++ |++++|++++|.. +++|+++|
T Consensus 83 ~~~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~---g~~~~l~~~vg~~~a~~l~ltg 159 (249)
T PRK07938 83 CFAAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQHLMRALFFTA 159 (249)
T ss_pred HHHHHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCc---hhHHHHHHhcCHHHHHHHHHhC
Confidence 5567888999999999999999999999999999999999999999999999986 4667899999998 99999999
Q ss_pred CCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCCCCHHHHHH
Q 016955 176 GRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGHDTVEEIIG 255 (380)
Q Consensus 176 ~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~i~~ 255 (380)
++++|+||+++|||+++||++++.
T Consensus 160 ~~~~a~eA~~~Glv~~vv~~~~l~-------------------------------------------------------- 183 (249)
T PRK07938 160 ATITAAELHHFGSVEEVVPRDQLD-------------------------------------------------------- 183 (249)
T ss_pred CcCCHHHHHHCCCccEEeCHHHHH--------------------------------------------------------
Confidence 999999999999999999987662
Q ss_pred HHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhhhhhhcccCCC
Q 016955 256 ALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEGVRTRLVEKSF 335 (380)
Q Consensus 256 ~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~egv~a~l~~k~r 335 (380)
+.|.+++++|+..||.+++.+|++++.....++++.++.|...+..+ +.++|++||+++|++ | |
T Consensus 184 -----------~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~---~~~~d~~eg~~af~e-k-r 247 (249)
T PRK07938 184 -----------EAALEVARKIAAKDTRVIRAAKEALNGIDPQDVERSYRWEQGFTFEL---NLAGVSDEHRDAFVE-K-R 247 (249)
T ss_pred -----------HHHHHHHHHHHhCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHH---hcCccHHHHHHHHHh-c-C
Confidence 22336789999999999999999999887778999999998888777 679999999999996 5 5
Q ss_pred CC
Q 016955 336 AP 337 (380)
Q Consensus 336 ~P 337 (380)
+|
T Consensus 248 ~p 249 (249)
T PRK07938 248 KA 249 (249)
T ss_pred CC
Confidence 65
No 63
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=100.00 E-value=1.1e-49 Score=372.12 Aligned_cols=243 Identities=36% Similarity=0.519 Sum_probs=226.9
Q ss_pred EEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHH
Q 016955 15 LVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECF 94 (380)
Q Consensus 15 ~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~ 94 (380)
.++.+++|++|+||||++.|++|.+|+.+|.++|+.++.|+++++||++|.|++||+|.|+.++... ..+....+.
T Consensus 1 ~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~----~~~~~~~~~ 76 (245)
T PF00378_consen 1 KYEIEDGVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNS----DEEEAREFF 76 (245)
T ss_dssp EEEEETTEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHH----HHHHHHHHH
T ss_pred CEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhcc----ccccccccc
Confidence 4789999999999999999999999999999999999999999999999999999999999998875 345667788
Q ss_pred HHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchH-HHHHhh
Q 016955 95 RTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHL-GEYLGL 173 (380)
Q Consensus 95 ~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~-a~~l~l 173 (380)
..++.++..+..+||||||+|+|+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++++++
T Consensus 77 ~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l 156 (245)
T PF00378_consen 77 RRFQELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLL 156 (245)
T ss_dssp HHHHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeeccccccccc
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred cCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCCCCHHHH
Q 016955 174 TGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGHDTVEEI 253 (380)
Q Consensus 174 tG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~i 253 (380)
+|++++|+||+++||||+++|++++..
T Consensus 157 ~g~~~~a~eA~~~Glv~~v~~~~~l~~----------------------------------------------------- 183 (245)
T PF00378_consen 157 TGEPISAEEALELGLVDEVVPDEELDE----------------------------------------------------- 183 (245)
T ss_dssp HTCEEEHHHHHHTTSSSEEESGGGHHH-----------------------------------------------------
T ss_pred ccccchhHHHHhhcceeEEcCchhhhH-----------------------------------------------------
Confidence 999999999999999999999988632
Q ss_pred HHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhhhhhhcc
Q 016955 254 IGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEGVRTRLV 331 (380)
Q Consensus 254 ~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~egv~a~l~ 331 (380)
.+.+++++|+..||.+++.+|+.+++.....+.+.++.+...+..+ +.++|++||+++|++
T Consensus 184 --------------~a~~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~~f~e 244 (245)
T PF00378_consen 184 --------------EALELAKRLAAKPPSALRATKKALNRALEQSLEEALEFEQDLFAEC---FKSEDFQEGIAAFLE 244 (245)
T ss_dssp --------------HHHHHHHHHHTSCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHH---HTSHHHHHHHHHHHT
T ss_pred --------------HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH---cCCHHHHHHHHHHhC
Confidence 2236789999999999999999999988888999999999999999 679999999999996
No 64
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-49 Score=381.20 Aligned_cols=257 Identities=21% Similarity=0.267 Sum_probs=214.8
Q ss_pred CCcEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHH-H---Hh-ccC
Q 016955 11 DNMVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLY-R---LL-SKG 85 (380)
Q Consensus 11 ~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~-~---~~-~~~ 85 (380)
++.+.++++++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|+++.. . .. ..+
T Consensus 4 ~~~v~~~~~~~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~~~ 83 (298)
T PRK12478 4 FQTLLYTTAGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMTDG 83 (298)
T ss_pred ceEEEEeccCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhccccc
Confidence 467899999999999999999999999999999999999999999999999999999999999998621 1 00 000
Q ss_pred CHHHHHHH---HH---HHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccc-cccCCCchhH
Q 016955 86 RVEECKEC---FR---TFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLI-GSHPDAGASY 158 (380)
Q Consensus 86 ~~~~~~~~---~~---~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~-G~~p~~g~~~ 158 (380)
.......+ .. ....++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++ |+++ |+.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~--~~~~ 161 (298)
T PRK12478 84 RWDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYL--TGMW 161 (298)
T ss_pred ccCchhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCc--hhHH
Confidence 00000111 01 11235667889999999999999999999999999999999999999999997 8875 3333
Q ss_pred HHhhcCchH-HHHHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhh
Q 016955 159 YLSHLPGHL-GEYLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHR 237 (380)
Q Consensus 159 ~L~r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (380)
+ +++|.. +++|++||++++|+||+++||||++||++++.. +
T Consensus 162 -~-~~vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~~l~~--~---------------------------------- 203 (298)
T PRK12478 162 -L-YRLSLAKVKWHSLTGRPLTGVQAAEAELINEAVPFERLEA--R---------------------------------- 203 (298)
T ss_pred -H-HHhhHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHH--H----------------------------------
Confidence 2 458988 999999999999999999999999999887632 2
Q ss_pred HHHHhhhhCCCCHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHhhh
Q 016955 238 VETLNKCFGHDTVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARF-ETLEECLKREYRMSMRMISR 316 (380)
Q Consensus 238 ~~~i~~~f~~~~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~-~~l~~~l~~e~~~~~~~~~~ 316 (380)
+.+++++|+..||.+++.+|++++.... .++.+++..|...+..+
T Consensus 204 -------------------------------a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~l~~~~~~e~~~~~~~--- 249 (298)
T PRK12478 204 -------------------------------VAEVATELARIPLSQLQAQKLIVNQAYENMGLASTQTLGGILDGLM--- 249 (298)
T ss_pred -------------------------------HHHHHHHHHhCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH---
Confidence 2366899999999999999999998766 46999999999998888
Q ss_pred CCCCcHH--------hhhhhhcccCCCCCCCCCCC
Q 016955 317 QISNDFC--------EGVRTRLVEKSFAPKWDPPC 343 (380)
Q Consensus 317 ~~~~d~~--------egv~a~l~~k~r~P~w~~~~ 343 (380)
+.++|++ ||++||++ | |+|.|..-+
T Consensus 250 ~~s~d~~e~~~~~~~egv~Af~e-k-R~p~f~~~~ 282 (298)
T PRK12478 250 RNTPDALEFIRTAETQGVRAAVE-R-RDGPFGDYS 282 (298)
T ss_pred hcChhHHHHHHHHHHHHHHHHHH-h-cCCcccccC
Confidence 6799997 59999996 5 799998665
No 65
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=100.00 E-value=5.4e-49 Score=373.38 Aligned_cols=251 Identities=19% Similarity=0.223 Sum_probs=220.6
Q ss_pred CCCCcEEEEE-cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCC--CccccccCchHHHHHhccC
Q 016955 9 DADNMVLVEE-GASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNG--RSFCAGGDVVTLYRLLSKG 85 (380)
Q Consensus 9 ~~~~~v~~~~-~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g--~~F~~G~Dl~~~~~~~~~~ 85 (380)
.....|.+++ +++|++||||||+ .|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++.... .
T Consensus 8 ~~~~~i~~~~~~~~Va~itlnr~~-~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~--~ 84 (278)
T PLN03214 8 GATPGVRVDRRPGGIAVVWLAKEP-VNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPK--T 84 (278)
T ss_pred CCCCceEEEEcCCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccc--c
Confidence 3566899998 6999999999985 6999999999999999999999999999999997 6999999999875311 1
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccc-cCCCchhHHHhhcC
Q 016955 86 RVEECKECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGS-HPDAGASYYLSHLP 164 (380)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~-~p~~g~~~~L~r~~ 164 (380)
.......+......++..+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|+ +|+.|++++|++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~ 164 (278)
T PLN03214 85 SAARYAEFWLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVI 164 (278)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhc
Confidence 11222334344456778899999999999999999999999999999999999999999999999 59899999999999
Q ss_pred chH-HHHHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhh
Q 016955 165 GHL-GEYLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNK 243 (380)
Q Consensus 165 g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 243 (380)
|.. +++|++||++++|+||+++||||++||.+++. .
T Consensus 165 G~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~--~----------------------------------------- 201 (278)
T PLN03214 165 DRKVAESLLLRGRLVRPAEAKQLGLIDEVVPAAALM--E----------------------------------------- 201 (278)
T ss_pred CHHHHHHHHHcCCccCHHHHHHcCCCcEecChHHHH--H-----------------------------------------
Confidence 999 99999999999999999999999999987652 2
Q ss_pred hhCCCCHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHH
Q 016955 244 CFGHDTVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFC 323 (380)
Q Consensus 244 ~f~~~~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~ 323 (380)
.|.+++++|++.||.+++.+|+++++.....++++++.|...+..+ +.++|++
T Consensus 202 ------------------------~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~---~~s~d~~ 254 (278)
T PLN03214 202 ------------------------AAASAMERALKLPSAARAATKALLREEFSAAWEAYYEEEAKGGWKM---LSEPSII 254 (278)
T ss_pred ------------------------HHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---hCCHHHH
Confidence 2336789999999999999999999888778999999998888777 6799999
Q ss_pred hhhhhhccc
Q 016955 324 EGVRTRLVE 332 (380)
Q Consensus 324 egv~a~l~~ 332 (380)
||+++|+++
T Consensus 255 egi~aflek 263 (278)
T PLN03214 255 KALGGVMER 263 (278)
T ss_pred HHHHHHHHH
Confidence 999999974
No 66
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.1e-48 Score=367.36 Aligned_cols=251 Identities=17% Similarity=0.209 Sum_probs=217.1
Q ss_pred CCcEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHH
Q 016955 11 DNMVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEEC 90 (380)
Q Consensus 11 ~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 90 (380)
+..+.++++++|++|+||||++.|++|.+|+.+|.++++.++ +++++|||+|.|++||+|+|++++...... ....
T Consensus 3 ~~~i~~~~~~~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~--~~~~ 78 (255)
T PRK07112 3 YQTIRVRQQGDVCFLQLHRPEAQNTINDRLIAECMDVLDRCE--HAATIVVLEGLPEVFCFGADFSAIAEKPDA--GRAD 78 (255)
T ss_pred CceEEEEeeCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhh--cCceEEEEEcCCCCcccCcCHHHHhhcccc--chhh
Confidence 567999999999999999999999999999999999999998 469999999999999999999987542111 1111
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchH-HH
Q 016955 91 KECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHL-GE 169 (380)
Q Consensus 91 ~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~-a~ 169 (380)
......++.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++| ..+|++++|.. ++
T Consensus 79 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~-~~~l~~~vg~~~a~ 157 (255)
T PRK07112 79 LIDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACV-LPFLIRRIGTQKAH 157 (255)
T ss_pred hhhHHHHHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchh-hHHHHHHhCHHHHH
Confidence 11233446788889999999999999999999999999999999999999999999999999865 56799999999 99
Q ss_pred HHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCCCC
Q 016955 170 YLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGHDT 249 (380)
Q Consensus 170 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 249 (380)
+|+++|++++|+||+++||||+++|+++..
T Consensus 158 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~-------------------------------------------------- 187 (255)
T PRK07112 158 YMTLMTQPVTAQQAFSWGLVDAYGANSDTL-------------------------------------------------- 187 (255)
T ss_pred HHHHhCCcccHHHHHHcCCCceecCcHHHH--------------------------------------------------
Confidence 999999999999999999999999865421
Q ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhhhhhh
Q 016955 250 VEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEGVRTR 329 (380)
Q Consensus 250 ~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~egv~a~ 329 (380)
+.+++++|+..||.+++.+|++++.. ...+.+.++.|......+ +.++|++||+++|
T Consensus 188 -------------------~~~~a~~l~~~~p~a~~~~K~~~~~~-~~~~~~~~~~e~~~~~~~---~~~~~~~eg~~af 244 (255)
T PRK07112 188 -------------------LRKHLLRLRCLNKAAVARYKSYASTL-DDTVAAARPAALAANIEM---FADPENLRKIARY 244 (255)
T ss_pred -------------------HHHHHHHHHhCCHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHH---HcChHHHHHHHHH
Confidence 12557899999999999999999865 446889999998888777 6799999999999
Q ss_pred cccCCCCCCCCC
Q 016955 330 LVEKSFAPKWDP 341 (380)
Q Consensus 330 l~~k~r~P~w~~ 341 (380)
++ | |+|.|..
T Consensus 245 ~~-k-r~p~~~~ 254 (255)
T PRK07112 245 VE-T-GKFPWEA 254 (255)
T ss_pred Hc-C-CCCCCCC
Confidence 96 5 7899974
No 67
>PRK08321 naphthoate synthase; Validated
Probab=100.00 E-value=1e-48 Score=375.70 Aligned_cols=259 Identities=20% Similarity=0.249 Sum_probs=217.3
Q ss_pred CCcEEEEE--cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCC-------CccccccCchHHHHH
Q 016955 11 DNMVLVEE--GASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNG-------RSFCAGGDVVTLYRL 81 (380)
Q Consensus 11 ~~~v~~~~--~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g-------~~F~~G~Dl~~~~~~ 81 (380)
+..|.+++ +++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++.+...
T Consensus 22 ~~~i~~~~~~~~~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~ 101 (302)
T PRK08321 22 FTDITYHRAVDQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRD 101 (302)
T ss_pred ceeEEEEEecCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccc
Confidence 45688988 899999999999999999999999999999999999999999999998 599999999875321
Q ss_pred h----ccCCHH--HHHHHH-HHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEee-cCeeEecccccccccCC
Q 016955 82 L----SKGRVE--ECKECF-RTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIAT-EKTVFAIPEVLIGSHPD 153 (380)
Q Consensus 82 ~----~~~~~~--~~~~~~-~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~-~~a~f~~pe~~~G~~p~ 153 (380)
. ...... ...... .....+...+..+||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~ 181 (302)
T PRK08321 102 GYQYAEGDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDG 181 (302)
T ss_pred cccccccccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCC
Confidence 0 000000 001111 122346677889999999999999999999999999999999 69999999999999999
Q ss_pred CchhHHHhhcCchH-HHHHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcc
Q 016955 154 AGASYYLSHLPGHL-GEYLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNEN 232 (380)
Q Consensus 154 ~g~~~~L~r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (380)
+|++++|++++|.. +++|++||++++|+||+++|||+++||++++.. +
T Consensus 182 ~~~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~--~----------------------------- 230 (302)
T PRK08321 182 GYGSAYLARQVGQKFAREIFFLGRTYSAEEAHDMGAVNAVVPHAELET--E----------------------------- 230 (302)
T ss_pred chHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCceEeeCHHHHHH--H-----------------------------
Confidence 99999999999998 999999999999999999999999999877632 2
Q ss_pred hhhhhHHHHhhhhCCCCHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 016955 233 SILHRVETLNKCFGHDTVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMR 312 (380)
Q Consensus 233 ~~~~~~~~i~~~f~~~~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~ 312 (380)
+.+++++|++.||.+++.+|++++.... .+.+....|...+..
T Consensus 231 ------------------------------------a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~ 273 (302)
T PRK08321 231 ------------------------------------ALEWAREINGKSPTAMRMLKYAFNLTDD-GLVGQQLFAGEATRL 273 (302)
T ss_pred ------------------------------------HHHHHHHHHhCCHHHHHHHHHHHHhhhc-ccHHHHHHHHHHHHH
Confidence 2367899999999999999999987654 344445567777777
Q ss_pred HhhhCCCCcHHhhhhhhcccCCCCCCCCCC
Q 016955 313 MISRQISNDFCEGVRTRLVEKSFAPKWDPP 342 (380)
Q Consensus 313 ~~~~~~~~d~~egv~a~l~~k~r~P~w~~~ 342 (380)
+ +.++|+++|+++|++ | |+|.|...
T Consensus 274 ~---~~~~d~~egi~af~e-k-r~p~~~~~ 298 (302)
T PRK08321 274 A---YMTDEAQEGRDAFLE-K-RDPDWSDF 298 (302)
T ss_pred H---hcCHHHHHHHHHHhc-c-CCCCCCCC
Confidence 6 679999999999996 5 78999764
No 68
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.3e-48 Score=365.56 Aligned_cols=245 Identities=20% Similarity=0.259 Sum_probs=220.9
Q ss_pred CCCCcEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHH
Q 016955 9 DADNMVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVE 88 (380)
Q Consensus 9 ~~~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~ 88 (380)
++...+.++++++|++|+||||++.|++|.+|+.+|.+++++++.|+++|+|||+|.|++||+|+|+.++.... . . .
T Consensus 2 ~~~~~~~~~~~~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~-~-~-~ 78 (249)
T PRK07110 2 MMKVVELREVEEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQ-T-G-K 78 (249)
T ss_pred CCCceEEEEeeCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhcc-c-h-h
Confidence 46778899999999999999999999999999999999999999999999999999999999999999875421 1 1 1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchH-
Q 016955 89 ECKECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHL- 167 (380)
Q Consensus 89 ~~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~- 167 (380)
..+ .. ..++..+.++||||||+|+|+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 79 --~~~-~~-~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~ 154 (249)
T PRK07110 79 --GTF-TE-ANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLAL 154 (249)
T ss_pred --hhH-hh-HHHHHHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHH
Confidence 112 22 4678889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCC
Q 016955 168 GEYLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGH 247 (380)
Q Consensus 168 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 247 (380)
+.+|++||++++|+||+++|||+++++++++. .++
T Consensus 155 a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~--~~a------------------------------------------- 189 (249)
T PRK07110 155 GQEMLLTARYYRGAELKKRGVPFPVLPRAEVL--EKA------------------------------------------- 189 (249)
T ss_pred HHHHHHcCCccCHHHHHHcCCCeEEeChHHHH--HHH-------------------------------------------
Confidence 99999999999999999999999999987662 222
Q ss_pred CCHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhhhh
Q 016955 248 DTVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEGVR 327 (380)
Q Consensus 248 ~~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~egv~ 327 (380)
.+.+++|++.||.+++.+|++++......+.+.++.|...+... +.++|++||++
T Consensus 190 ----------------------~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~---~~~~~~~egi~ 244 (249)
T PRK07110 190 ----------------------LELARSLAEKPRHSLVLLKDHLVADRRRRLPEVIEQEVAMHEKT---FHQPEVKRRIE 244 (249)
T ss_pred ----------------------HHHHHHHHhCCHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHH---hCCHhHHHHHH
Confidence 36689999999999999999999988889999999999998888 77999999999
Q ss_pred hhc
Q 016955 328 TRL 330 (380)
Q Consensus 328 a~l 330 (380)
++-
T Consensus 245 ~~~ 247 (249)
T PRK07110 245 SLY 247 (249)
T ss_pred Hhc
Confidence 864
No 69
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.8e-48 Score=362.60 Aligned_cols=248 Identities=23% Similarity=0.261 Sum_probs=215.4
Q ss_pred CCCcEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHH
Q 016955 10 ADNMVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEE 89 (380)
Q Consensus 10 ~~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 89 (380)
.++.+.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++.... ....
T Consensus 2 ~~~~v~~~~~~~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~---~~~~ 78 (258)
T PRK06190 2 TEPILLVETHDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDG---SAYG 78 (258)
T ss_pred CCceEEEEeeCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhccc---chhh
Confidence 4568999999999999999999999999999999999999999999999999999999999999999875321 1111
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchH-H
Q 016955 90 CKECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHL-G 168 (380)
Q Consensus 90 ~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~-a 168 (380)
. ...++.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. +
T Consensus 79 -~--~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 155 (258)
T PRK06190 79 -A--QDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRA 155 (258)
T ss_pred -H--HHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHH
Confidence 1 23455678889999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCCC
Q 016955 169 EYLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGHD 248 (380)
Q Consensus 169 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 248 (380)
++|++||++++|+||+++||||+++|++++. ++
T Consensus 156 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~--~~--------------------------------------------- 188 (258)
T PRK06190 156 RRMSLTGDFLDAADALRAGLVTEVVPHDELL--PR--------------------------------------------- 188 (258)
T ss_pred HHHHHhCCccCHHHHHHcCCCeEecCHhHHH--HH---------------------------------------------
Confidence 9999999999999999999999999987663 22
Q ss_pred CHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcH-Hhhhh
Q 016955 249 TVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDF-CEGVR 327 (380)
Q Consensus 249 ~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~-~egv~ 327 (380)
|.+++++|+..||.+++.+|++++.....++.+.++.|...+..++.+. .+++ .+..+
T Consensus 189 --------------------a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~-~~~~~~~~~~ 247 (258)
T PRK06190 189 --------------------ARRLAASIAGNNPAAVRALKASYDDGAAAQTGDALALEAEAARAHNRSV-SPDGIAARRE 247 (258)
T ss_pred --------------------HHHHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCC-ChHHHHHHHH
Confidence 2367899999999999999999998888899999999999998884421 2443 34444
Q ss_pred hhcc
Q 016955 328 TRLV 331 (380)
Q Consensus 328 a~l~ 331 (380)
+|+.
T Consensus 248 ~~~~ 251 (258)
T PRK06190 248 AVMA 251 (258)
T ss_pred HHHH
Confidence 4553
No 70
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=1.1e-46 Score=383.30 Aligned_cols=254 Identities=16% Similarity=0.121 Sum_probs=221.9
Q ss_pred EEEEEcCcEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHHh-cCCceEEEEEeCCCc-cccccCchHH
Q 016955 14 VLVEEGASSRTIILNRPNVL-------------NALLTPMGVRMTKLYESWEK-DSRVGFVVIKGNGRS-FCAGGDVVTL 78 (380)
Q Consensus 14 v~~~~~~~v~~i~lnrp~~~-------------Nal~~~~~~eL~~~l~~~~~-d~~v~~vVl~g~g~~-F~~G~Dl~~~ 78 (380)
+.+++.++|++||||||+++ |+|+.+|+.+|.+++..++. |+++|+|||||.|+. ||+|.|+...
T Consensus 260 v~~~~~~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~Dl~~~ 339 (546)
T TIGR03222 260 VAIDRAARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAADALLE 339 (546)
T ss_pred EEEeccCCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCcCcccc
Confidence 55667899999999999999 99999999999999999984 599999999999987 9999999832
Q ss_pred HHHhccCCHHHHHHHHHHHHHHHHHHhcCCCcEEEEE-cchhcchH-hHHhhhCCeeEe-------ecCeeEeccccccc
Q 016955 79 YRLLSKGRVEECKECFRTFYSLMYRLNTYLKPHVAIM-NGITMGGG-AGLSVHGSFCIA-------TEKTVFAIPEVLIG 149 (380)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIaav-~G~a~GgG-~~lal~~D~ria-------~~~a~f~~pe~~~G 149 (380)
.. .... .....+.....++..|..+||||||+| ||+|+||| ++|+++||+||+ +++++|++||+++|
T Consensus 340 ~~---~~~~-~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~~lG 415 (546)
T TIGR03222 340 AH---KDHW-FVRETIGYLRRTLARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAITLSELNFG 415 (546)
T ss_pred cc---ccch-hHHHHHHHHHHHHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCccccc
Confidence 11 0111 112223334567889999999999999 89999999 999999999999 89999999999999
Q ss_pred ccCCCchhHHHhhcC-chH-H--HHHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcc
Q 016955 150 SHPDAGASYYLSHLP-GHL-G--EYLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSE 225 (380)
Q Consensus 150 ~~p~~g~~~~L~r~~-g~~-a--~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~ 225 (380)
++|++|++++|++++ |.. + .+|++||++++|+||+++|||++++|++++.+ +
T Consensus 416 l~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~~~l~~--~---------------------- 471 (546)
T TIGR03222 416 LYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDDIDWED--E---------------------- 471 (546)
T ss_pred cCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCchHHHH--H----------------------
Confidence 999999999999998 886 7 55999999999999999999999999987632 2
Q ss_pred cCCCCcchhhhhHHHHhhhhCCCCHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHH-HH
Q 016955 226 HVYPNENSILHRVETLNKCFGHDTVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEEC-LK 304 (380)
Q Consensus 226 ~~~~~~~~~~~~~~~i~~~f~~~~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~-l~ 304 (380)
+.+++++|++.||.|++.+|++++.....++++. +.
T Consensus 472 -------------------------------------------a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~ 508 (546)
T TIGR03222 472 -------------------------------------------IRIALEERASFSPDALTGLEANLRFAGPETMETRIFG 508 (546)
T ss_pred -------------------------------------------HHHHHHHHHhcCHHHHHHHHHHHhhcCCcChhhhHHH
Confidence 2367899999999999999999999988999999 99
Q ss_pred HHHHHHHHHhhhCCCCcHHh---hhhhhcccCCCCCCCCCCC
Q 016955 305 REYRMSMRMISRQISNDFCE---GVRTRLVEKSFAPKWDPPC 343 (380)
Q Consensus 305 ~e~~~~~~~~~~~~~~d~~e---gv~a~l~~k~r~P~w~~~~ 343 (380)
.|...+..+ +.++|.+| |+++|++ | |+|+|+..+
T Consensus 509 ~e~~~~~~~---~~~~d~~e~~~g~~af~e-k-r~p~f~~~~ 545 (546)
T TIGR03222 509 RLTAWQNWI---FNRPNAVGENGALKVYGS-G-KKAQFDMER 545 (546)
T ss_pred HHHHHHHHH---hcCCcccchhhHHHHHcc-C-CCCCCCccC
Confidence 999999888 67999999 9999996 5 799998654
No 71
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=2.2e-46 Score=382.33 Aligned_cols=253 Identities=15% Similarity=0.087 Sum_probs=220.1
Q ss_pred EEEEcCcEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHHh-cCCceEEEEEeCC-CccccccCchHHH
Q 016955 15 LVEEGASSRTIILNRPNVL-------------NALLTPMGVRMTKLYESWEK-DSRVGFVVIKGNG-RSFCAGGDVVTLY 79 (380)
Q Consensus 15 ~~~~~~~v~~i~lnrp~~~-------------Nal~~~~~~eL~~~l~~~~~-d~~v~~vVl~g~g-~~F~~G~Dl~~~~ 79 (380)
.+++.++|++||||||+++ |+||.+|+.+|.++++.++. |+++|+|||||.| ++||+|+|++...
T Consensus 265 ~~~~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~Dl~~~~ 344 (550)
T PRK08184 265 EIDRAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAADATLLA 344 (550)
T ss_pred EEEccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCCChhhhc
Confidence 4455689999999999988 68999999999999999986 7999999999999 5999999987321
Q ss_pred HHhccCCHHHHHHHHHHHHHHHHHHhcCCCcEEEEEc-chhcchH-hHHhhhCCeeEee-------cCeeEecccccccc
Q 016955 80 RLLSKGRVEECKECFRTFYSLMYRLNTYLKPHVAIMN-GITMGGG-AGLSVHGSFCIAT-------EKTVFAIPEVLIGS 150 (380)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIaav~-G~a~GgG-~~lal~~D~ria~-------~~a~f~~pe~~~G~ 150 (380)
.. +.............++.+|..+||||||+|| |+|+||| ++|+++||+|||+ ++++|++||+++|+
T Consensus 345 -~~---~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~pe~~~Gl 420 (550)
T PRK08184 345 -HK---DHWLVRETRGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITLSALNFGL 420 (550)
T ss_pred -cc---chHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEECccccccC
Confidence 10 1111122234445678899999999999997 9999999 9999999999999 99999999999999
Q ss_pred cCCCchhHHHhhc-CchH-HHHH--hhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhccc
Q 016955 151 HPDAGASYYLSHL-PGHL-GEYL--GLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEH 226 (380)
Q Consensus 151 ~p~~g~~~~L~r~-~g~~-a~~l--~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 226 (380)
+|++|++++|+++ +|.. ++++ ++||++++|+||+++||||+++|++++.. +
T Consensus 421 ~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~~~l~~--~----------------------- 475 (550)
T PRK08184 421 YPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDDIDWED--E----------------------- 475 (550)
T ss_pred CCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHHHHHcCCcccccChHHHHH--H-----------------------
Confidence 9999999999988 6998 8886 59999999999999999999999887632 2
Q ss_pred CCCCcchhhhhHHHHhhhhCCCCHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHH-HHH
Q 016955 227 VYPNENSILHRVETLNKCFGHDTVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEEC-LKR 305 (380)
Q Consensus 227 ~~~~~~~~~~~~~~i~~~f~~~~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~-l~~ 305 (380)
+.+++++|+..||.|++.+|++++.....+++++ +.+
T Consensus 476 ------------------------------------------a~~~a~~ia~~~p~a~~~~K~~l~~~~~~~~~~~~~~~ 513 (550)
T PRK08184 476 ------------------------------------------VRIALEERASLSPDALTGMEANLRFAGPETMETRIFGR 513 (550)
T ss_pred ------------------------------------------HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 2367899999999999999999999999999999 999
Q ss_pred HHHHHHHHhhhCCCCcHHh---hhhhhcccCCCCCCCCCCC
Q 016955 306 EYRMSMRMISRQISNDFCE---GVRTRLVEKSFAPKWDPPC 343 (380)
Q Consensus 306 e~~~~~~~~~~~~~~d~~e---gv~a~l~~k~r~P~w~~~~ 343 (380)
|...+..+ +.++|.+| |+++|++ | |+|+|+..+
T Consensus 514 e~~~~~~~---~~~~d~~e~~~g~~af~e-k-r~~~f~~~~ 549 (550)
T PRK08184 514 LTAWQNWI---FQRPNAVGEKGALKVYGT-G-QKAQFDWNR 549 (550)
T ss_pred HHHHHHHH---hcCCcccccchHHHHhcc-C-CCCCCCCCC
Confidence 99998888 67999999 9999996 5 899998765
No 72
>PRK05869 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=4.8e-46 Score=342.24 Aligned_cols=214 Identities=22% Similarity=0.323 Sum_probs=188.9
Q ss_pred CCcEEEEEc-----CcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccC
Q 016955 11 DNMVLVEEG-----ASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKG 85 (380)
Q Consensus 11 ~~~v~~~~~-----~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~ 85 (380)
+++|.++.. ++|++|+||||++ |++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++....
T Consensus 2 ~~~~~~~~~~~~~~~~i~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~--- 77 (222)
T PRK05869 2 NEFVNVVVSDGSQDAGLATLLLSRPPT-NALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLS--- 77 (222)
T ss_pred ccchhhhcccCcccCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccC---
Confidence 455666655 8999999999985 9999999999999999999999999999999999999999999875421
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCc
Q 016955 86 RVEECKECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPG 165 (380)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g 165 (380)
........+.+.+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|
T Consensus 78 -~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig 156 (222)
T PRK05869 78 -AQEADTAARVRQQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAG 156 (222)
T ss_pred -hhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhC
Confidence 1122233445567888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hH-HHHHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhh
Q 016955 166 HL-GEYLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKC 244 (380)
Q Consensus 166 ~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 244 (380)
.. +++++++|++++|+||+++||||+++|++++. .
T Consensus 157 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~--~------------------------------------------ 192 (222)
T PRK05869 157 PSRAKELVFSGRFFDAEEALALGLIDEMVAPDDVY--D------------------------------------------ 192 (222)
T ss_pred HHHHHHHHHcCCCcCHHHHHHCCCCCEeeCchHHH--H------------------------------------------
Confidence 98 99999999999999999999999999987663 2
Q ss_pred hCCCCHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Q 016955 245 FGHDTVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARF 296 (380)
Q Consensus 245 f~~~~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~ 296 (380)
.|.+++++|+..||.+++.+|+++++..+
T Consensus 193 -----------------------~a~~~a~~ia~~~~~a~~~~K~~~~~~~~ 221 (222)
T PRK05869 193 -----------------------AAAAWARRFLDGPPHALAAAKAGISDVYE 221 (222)
T ss_pred -----------------------HHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 23367899999999999999999987653
No 73
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.1e-45 Score=350.52 Aligned_cols=235 Identities=21% Similarity=0.306 Sum_probs=201.8
Q ss_pred CCCcEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhc-c----
Q 016955 10 ADNMVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLS-K---- 84 (380)
Q Consensus 10 ~~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~-~---- 84 (380)
.++.|.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++..... .
T Consensus 2 ~~~~v~~~~~~~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~~~ 81 (288)
T PRK08290 2 EYEYVRYEVAGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPGPD 81 (288)
T ss_pred CCceEEEEeeCCEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCccccccccccccccc
Confidence 56679999999999999999999999999999999999999999999999999999999999999998632110 0
Q ss_pred ------------CC-HHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEeccccccccc
Q 016955 85 ------------GR-VEECKECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSH 151 (380)
Q Consensus 85 ------------~~-~~~~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~ 151 (380)
.. ..........+..++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~lGl- 160 (288)
T PRK08290 82 QHPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMGI- 160 (288)
T ss_pred cccccccccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCcccccCc-
Confidence 00 0111112234456778899999999999999999999999999999999999999999999998
Q ss_pred CCCchhHHHhhcCchH-HHHHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCC
Q 016955 152 PDAGASYYLSHLPGHL-GEYLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPN 230 (380)
Q Consensus 152 p~~g~~~~L~r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (380)
|+ ++.+++++++|.. +++|++||+.++|+||+++||||++||++++..
T Consensus 161 ~~-~~~~~l~~~iG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~------------------------------ 209 (288)
T PRK08290 161 PG-VEYFAHPWELGPRKAKELLFTGDRLTADEAHRLGMVNRVVPRDELEA------------------------------ 209 (288)
T ss_pred Cc-chHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEeeCHHHHHH------------------------------
Confidence 44 4567789999998 999999999999999999999999999876632
Q ss_pred cchhhhhHHHHhhhhCCCCHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhC-CHHHHHHHHHHH
Q 016955 231 ENSILHRVETLNKCFGHDTVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFE-TLEECLKREYRM 309 (380)
Q Consensus 231 ~~~~~~~~~~i~~~f~~~~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~-~l~~~l~~e~~~ 309 (380)
.+.+++++|++.||.+++.+|+++++.... ++++++..|...
T Consensus 210 -------------------------------------~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~ 252 (288)
T PRK08290 210 -------------------------------------ETLELARRIAAMPPFGLRLTKRAVNQTLDAQGFRAALDAVFDL 252 (288)
T ss_pred -------------------------------------HHHHHHHHHHhCCHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 123678999999999999999999988775 699999999988
Q ss_pred HHHH
Q 016955 310 SMRM 313 (380)
Q Consensus 310 ~~~~ 313 (380)
....
T Consensus 253 ~~~~ 256 (288)
T PRK08290 253 HQLG 256 (288)
T ss_pred HHHc
Confidence 8776
No 74
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=4.6e-44 Score=378.45 Aligned_cols=281 Identities=18% Similarity=0.234 Sum_probs=221.5
Q ss_pred cEEEE-EcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHH
Q 016955 13 MVLVE-EGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECK 91 (380)
Q Consensus 13 ~v~~~-~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~ 91 (380)
.+.++ ++++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++..... .......
T Consensus 7 ~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~-~~~~~~~ 85 (715)
T PRK11730 7 TLQVDWLEDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFA-APEEELS 85 (715)
T ss_pred eEEEEEcCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhcc-CCHHHHH
Confidence 57777 479999999999999999999999999999999999999999999999999999999998754211 1222334
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchH-HHH
Q 016955 92 ECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHL-GEY 170 (380)
Q Consensus 92 ~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~-a~~ 170 (380)
.+.+..+.++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.. |++
T Consensus 86 ~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~~A~~ 165 (715)
T PRK11730 86 QWLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGADNALE 165 (715)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCHHHHHH
Confidence 5556667788899999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccC-------CCCcchhhhhHHHHhh
Q 016955 171 LGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHV-------YPNENSILHRVETLNK 243 (380)
Q Consensus 171 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~i~~ 243 (380)
|++||++++|+||+++||||++||++++..-..++. ++..... .+...++.. +.+.+
T Consensus 166 llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a--------------~~la~~~~~~~~~~~~~~~p~a~--~~~~~ 229 (715)
T PRK11730 166 WIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALL--------------KQAIAGKLDWKARRQPKLEPLKL--SKIEA 229 (715)
T ss_pred HHHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHHH--------------HHHhhcCCccccccCcccccccc--cchhH
Confidence 999999999999999999999999888743222221 1111000 000000000 00111
Q ss_pred hhCCCCHHHHHHHHHhcccccchHHHHHH-HHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcH
Q 016955 244 CFGHDTVEEIIGALESEVAETNDEWCLST-LKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDF 322 (380)
Q Consensus 244 ~f~~~~~~~i~~~L~~~~~~~~~~~a~~~-a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~ 322 (380)
++ .+ ..+.+. .++..+..|.++ .++++++.+...+++++++.|.+.+..+ +.++|+
T Consensus 230 ~~-------~~------------~~~k~~~~~~~~~~~pa~~-~~~~~i~~~~~~~~~~~l~~E~~~~~~~---~~s~d~ 286 (715)
T PRK11730 230 MM-------SF------------TTAKGMVAQKAGKHYPAPM-TAVKTIEAAAGLGRDEALELEAKGFVKL---AKTNVA 286 (715)
T ss_pred HH-------HH------------HHHHHHHHHhhccCCccHH-HHHHHHHHHhcCCHHHHHHHHHHHHHHH---hCCHHH
Confidence 10 00 111111 244566666666 6778899888889999999999999999 779999
Q ss_pred HhhhhhhcccC
Q 016955 323 CEGVRTRLVEK 333 (380)
Q Consensus 323 ~egv~a~l~~k 333 (380)
+||+++|++++
T Consensus 287 ~egi~aF~~~~ 297 (715)
T PRK11730 287 RALVGIFLNDQ 297 (715)
T ss_pred HHHHHHHHHHH
Confidence 99999999854
No 75
>PRK08788 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.1e-43 Score=337.07 Aligned_cols=248 Identities=17% Similarity=0.190 Sum_probs=201.6
Q ss_pred cEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHh-----cCCceEEEEEeC-CCccccccCchHHHHHhccCC
Q 016955 13 MVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEK-----DSRVGFVVIKGN-GRSFCAGGDVVTLYRLLSKGR 86 (380)
Q Consensus 13 ~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~-----d~~v~~vVl~g~-g~~F~~G~Dl~~~~~~~~~~~ 86 (380)
.|.++++++|++|+|| |+++|+||.+|+.+|.+++++++. |+++++|||+|. |++||+|+|++++........
T Consensus 18 ~i~~e~~~~ia~itl~-p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~ 96 (287)
T PRK08788 18 RVYYEEERNVMWMYMR-AQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGD 96 (287)
T ss_pred EEEEEccCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccc
Confidence 4677778999999996 989999999999999999999998 899999999999 799999999998753211111
Q ss_pred HHHHHHHHHHHHHHHHHHh---cCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhc
Q 016955 87 VEECKECFRTFYSLMYRLN---TYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHL 163 (380)
Q Consensus 87 ~~~~~~~~~~~~~l~~~l~---~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~ 163 (380)
......+.+.+...+..+. .+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+++
T Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~~l~~~ 176 (287)
T PRK08788 97 RDALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLARR 176 (287)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHHHHHHH
Confidence 1212222223333333333 7999999999999999999999999999999999999999999999999999999999
Q ss_pred CchH-HHHHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHh
Q 016955 164 PGHL-GEYLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLN 242 (380)
Q Consensus 164 ~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 242 (380)
+|.. +++|++||+.++|+||+++||||+++|++++.+ +
T Consensus 177 vG~~~A~ellltG~~l~A~eA~~~GLV~~vv~~~el~~--~--------------------------------------- 215 (287)
T PRK08788 177 VGPKLAEELILSGKLYTAEELHDMGLVDVLVEDGQGEA--A--------------------------------------- 215 (287)
T ss_pred hhHHHHHHHHHcCCCCCHHHHHHCCCCcEecCchHHHH--H---------------------------------------
Confidence 9999 999999999999999999999999999887632 2
Q ss_pred hhhCCCCHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcH
Q 016955 243 KCFGHDTVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDF 322 (380)
Q Consensus 243 ~~f~~~~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~ 322 (380)
+.+++++|++. |.+....|+..+.....++.+.++.+...+..++. ....-
T Consensus 216 --------------------------a~~~a~~ia~~-~~~~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 266 (287)
T PRK08788 216 --------------------------VRTFIRKSKRK-LNGWRAMLRARRRVNPLSLEELMDITEIWVDAALQ--LEEKD 266 (287)
T ss_pred --------------------------HHHHHHHHhcC-ccHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhh--ccccc
Confidence 23667888877 77777777777766666889999988777776643 23445
Q ss_pred Hhhhhhhcc
Q 016955 323 CEGVRTRLV 331 (380)
Q Consensus 323 ~egv~a~l~ 331 (380)
++-|..|+-
T Consensus 267 ~~~~~~~~~ 275 (287)
T PRK08788 267 LRTMERLVR 275 (287)
T ss_pred HHHHHHHHH
Confidence 667777763
No 76
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.5e-44 Score=331.75 Aligned_cols=224 Identities=18% Similarity=0.170 Sum_probs=197.6
Q ss_pred CCcEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHH
Q 016955 11 DNMVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEEC 90 (380)
Q Consensus 11 ~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~ 90 (380)
.+.|.++++++|++||||||+ .|++|.+|+.+|.++++.++ +++++||++|.|++||+|.|++++... ....
T Consensus 2 ~~~i~~~~~~~v~~itln~~~-~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g~~F~~G~Dl~~~~~~-----~~~~ 73 (229)
T PRK06213 2 SELVSYTLEDGVATITLDDGK-VNALSPAMIDALNAALDQAE--DDRAVVVITGQPGIFSGGFDLKVMTSG-----AQAA 73 (229)
T ss_pred cceEEEEecCCEEEEEeCCCC-CCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCCCceEcCcCHHHHhcc-----hHhH
Confidence 346899999999999999984 69999999999999999988 568999999999999999999987531 2223
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecC-eeEecccccccccCCCchhHHHhhcCchH-H
Q 016955 91 KECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEK-TVFAIPEVLIGSHPDAGASYYLSHLPGHL-G 168 (380)
Q Consensus 91 ~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~-a~f~~pe~~~G~~p~~g~~~~L~r~~g~~-a 168 (380)
..++....+++.++.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|+.|+..++++++|.. +
T Consensus 74 ~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~a 153 (229)
T PRK06213 74 IALLTAGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSAF 153 (229)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHHHH
Confidence 445566778889999999999999999999999999999999999999 99999999999998888888899999998 9
Q ss_pred HHHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCCC
Q 016955 169 EYLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGHD 248 (380)
Q Consensus 169 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 248 (380)
++|+++|++++|+||+++||||+++|++++.. +
T Consensus 154 ~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~--~--------------------------------------------- 186 (229)
T PRK06213 154 QRAVINAEMFDPEEAVAAGFLDEVVPPEQLLA--R--------------------------------------------- 186 (229)
T ss_pred HHHHHcCcccCHHHHHHCCCceeccChHHHHH--H---------------------------------------------
Confidence 99999999999999999999999999877632 2
Q ss_pred CHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 016955 249 TVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRM 309 (380)
Q Consensus 249 ~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~ 309 (380)
|.+++++|++.||.+++.+|++++......+.++++.|.+.
T Consensus 187 --------------------a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~~~~~ 227 (229)
T PRK06213 187 --------------------AQAAARELAGLNMGAHAATKLKVRAAALEAIRAAIEGDAAE 227 (229)
T ss_pred --------------------HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhchhhhhhh
Confidence 23678999999999999999999987777788888877664
No 77
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.8e-44 Score=343.19 Aligned_cols=222 Identities=21% Similarity=0.275 Sum_probs=189.4
Q ss_pred CCCCCCCcEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccC
Q 016955 6 DCNDADNMVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKG 85 (380)
Q Consensus 6 ~~~~~~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~ 85 (380)
.+.+.++.|.++++++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|+|+.++.......
T Consensus 4 ~~~~~~~~v~~e~~~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~ 83 (302)
T PRK08272 4 VDLDNLKTMTYEVTGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSG 83 (302)
T ss_pred cccCCCCeEEEEeECCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhccccc
Confidence 44556778999999999999999999999999999999999999999999999999999999999999999886432100
Q ss_pred ---C----------------HHH--HHHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecc
Q 016955 86 ---R----------------VEE--CKECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIP 144 (380)
Q Consensus 86 ---~----------------~~~--~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~p 144 (380)
. ... ...++...+.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~p 163 (302)
T PRK08272 84 GGGGAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYP 163 (302)
T ss_pred ccccccccccccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCc
Confidence 0 000 0123455667788899999999999999999999999999999999999999999
Q ss_pred cccccccCCCchhHHHhhcCchH-HHHHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHh
Q 016955 145 EVLIGSHPDAGASYYLSHLPGHL-GEYLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKH 223 (380)
Q Consensus 145 e~~~G~~p~~g~~~~L~r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~ 223 (380)
|+++|.+|+. ..+++++|.. |++|++||++++|+||+++||||+++|++++..
T Consensus 164 e~~~gg~~~~---~~~~~~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~----------------------- 217 (302)
T PRK08272 164 PTRVWGVPAT---GMWAYRLGPQRAKRLLFTGDCITGAQAAEWGLAVEAVPPEELDE----------------------- 217 (302)
T ss_pred chhcccCChH---HHHHHHhhHHHHHHHHHcCCccCHHHHHHcCCCceecCHHHHHH-----------------------
Confidence 9998666643 3578889999 999999999999999999999999999876632
Q ss_pred cccCCCCcchhhhhHHHHhhhhCCCCHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhC
Q 016955 224 SEHVYPNENSILHRVETLNKCFGHDTVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFE 297 (380)
Q Consensus 224 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~ 297 (380)
.+.+++++|++.||.+++.+|+++++..+.
T Consensus 218 --------------------------------------------~a~~la~~ia~~~~~a~~~~K~~l~~~~~~ 247 (302)
T PRK08272 218 --------------------------------------------RTERLVERIAAVPVNQLAMVKLAVNSALLQ 247 (302)
T ss_pred --------------------------------------------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 123668999999999999999999987653
No 78
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=1.3e-44 Score=316.17 Aligned_cols=258 Identities=19% Similarity=0.278 Sum_probs=235.2
Q ss_pred CcEEEEE----cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeC-CCccccccCchHHHHHhccCC
Q 016955 12 NMVLVEE----GASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGN-GRSFCAGGDVVTLYRLLSKGR 86 (380)
Q Consensus 12 ~~v~~~~----~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~-g~~F~~G~Dl~~~~~~~~~~~ 86 (380)
..|.+++ +.|+.+|-+|||.+.|+++.-|+++|.++++.+..|+.+|+|+|++. .+.||+|.||++-... +
T Consensus 27 ~Ev~v~~L~g~~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~M----s 102 (291)
T KOG1679|consen 27 NEVFVRRLTGKDEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTM----S 102 (291)
T ss_pred ceeeeeeccCCCCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcC----C
Confidence 4566665 56899999999999999999999999999999999999999999998 5999999999997765 6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCch
Q 016955 87 VEECKECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGH 166 (380)
Q Consensus 87 ~~~~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~ 166 (380)
+++...|+..+..++..|.++|.||||+|+|.++|||++++++||+|+|+.+++|+++|++++++|++|++++|+|.+|.
T Consensus 103 ~~Ev~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg~ 182 (291)
T KOG1679|consen 103 PSEVTRFVNGLRGLFNDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVGV 182 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHhH
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhh
Q 016955 167 L-GEYLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCF 245 (380)
Q Consensus 167 ~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f 245 (380)
. +++|++||+.+++.||...||||++|...+-.+-
T Consensus 183 alaKELIftarvl~g~eA~~lGlVnhvv~qneegda-------------------------------------------- 218 (291)
T KOG1679|consen 183 ALAKELIFTARVLNGAEAAKLGLVNHVVEQNEEGDA-------------------------------------------- 218 (291)
T ss_pred HHHHhHhhhheeccchhHHhcchHHHHHhcCccccH--------------------------------------------
Confidence 9 9999999999999999999999999987653211
Q ss_pred CCCCHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhh
Q 016955 246 GHDTVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEG 325 (380)
Q Consensus 246 ~~~~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~eg 325 (380)
..+-|.+++++|....|.+++++|..++.+...++..++.-|..-.... .-+.|..||
T Consensus 219 -------------------a~~kal~lA~eilp~gPiavr~aKlAIn~G~evdiasgl~iEe~CYaq~---i~t~drLeg 276 (291)
T KOG1679|consen 219 -------------------AYQKALELAREILPQGPIAVRLAKLAINLGMEVDIASGLSIEEMCYAQI---IPTKDRLEG 276 (291)
T ss_pred -------------------HHHHHHHHHHHhccCCchhhhHHHHHhccCceecccccccHHHHHHHhc---CcHHHHHHH
Confidence 1233458899999999999999999999999999999999998887777 568999999
Q ss_pred hhhhcccCCCCCCCCC
Q 016955 326 VRTRLVEKSFAPKWDP 341 (380)
Q Consensus 326 v~a~l~~k~r~P~w~~ 341 (380)
+.+|.+ | |.|.+++
T Consensus 277 laaf~e-k-r~p~y~G 290 (291)
T KOG1679|consen 277 LAAFKE-K-RKPEYKG 290 (291)
T ss_pred HHHHHh-h-cCCCcCC
Confidence 999997 5 7998875
No 79
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=1.5e-44 Score=318.46 Aligned_cols=262 Identities=20% Similarity=0.340 Sum_probs=228.9
Q ss_pred CCCCcEEEE---EcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhc--
Q 016955 9 DADNMVLVE---EGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLS-- 83 (380)
Q Consensus 9 ~~~~~v~~~---~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~-- 83 (380)
.+++.+.+. .+..|..+.||||.|+|+++..|..|+.++++.+..||++|+|||.|+|++||+|+|+..+.....
T Consensus 16 ~s~ksl~v~vk~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~~~~~~~~ 95 (292)
T KOG1681|consen 16 HSYKSLEVSVKSAQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAGKHFCAGIDLNDMASDRILQ 95 (292)
T ss_pred cccceeeeeecCCCCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCCcceecccCcchhhhhhccc
Confidence 345655555 356899999999999999999999999999999999999999999999999999999887754321
Q ss_pred -cC-----CHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchh
Q 016955 84 -KG-----RVEECKECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGAS 157 (380)
Q Consensus 84 -~~-----~~~~~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~ 157 (380)
++ ......+++..+++.+..|.+||||||++|+|+|+|+|+.|..+||+|+|+++|.|+.-|+.+|+..+.|..
T Consensus 96 ~~~dd~aR~g~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGTL 175 (292)
T KOG1681|consen 96 PEGDDVARKGRSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGTL 175 (292)
T ss_pred cccchHhhhhHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhhH
Confidence 11 123466778888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCchH--HHHHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhh
Q 016955 158 YYLSHLPGHL--GEYLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSIL 235 (380)
Q Consensus 158 ~~L~r~~g~~--a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (380)
.+||..+|.. ++++.+|++.++|.||++.|||.+|+|+.+-. +...+
T Consensus 176 ~RlpkvVGn~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~~l-l~~~l------------------------------ 224 (292)
T KOG1681|consen 176 NRLPKVVGNQSLARELAFTARKFSADEALDSGLVSRVFPDKEEL-LNGAL------------------------------ 224 (292)
T ss_pred hhhhHHhcchHHHHHHHhhhhhcchhhhhhcCcchhhcCCHHHH-HhhhH------------------------------
Confidence 9999999965 99999999999999999999999999885431 33333
Q ss_pred hhHHHHhhhhCCCCHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhh
Q 016955 236 HRVETLNKCFGHDTVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMIS 315 (380)
Q Consensus 236 ~~~~~i~~~f~~~~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~ 315 (380)
.+|+.|+..||.+++.||+.++...+.+.++.|..-..+....
T Consensus 225 -----------------------------------~mA~~Ia~KSpvaVqgTK~~L~ysrehsv~~sLnyvatwNms~-- 267 (292)
T KOG1681|consen 225 -----------------------------------PMAELIASKSPVAVQGTKENLLYSREHSVEESLNYVATWNMSM-- 267 (292)
T ss_pred -----------------------------------HHHHHhccCCceeeechHHHHHHHhhhhhhhhHHHHHHHHHHH--
Confidence 6789999999999999999999999999999999988888777
Q ss_pred hCCCCcHHhhhhhhcccCCCCCCCC
Q 016955 316 RQISNDFCEGVRTRLVEKSFAPKWD 340 (380)
Q Consensus 316 ~~~~~d~~egv~a~l~~k~r~P~w~ 340 (380)
..++|+.+++.+-+.++ +.+.|+
T Consensus 268 -L~s~Dl~~av~a~m~k~-k~~tfs 290 (292)
T KOG1681|consen 268 -LLSDDLVKAVMAQMEKL-KTVTFS 290 (292)
T ss_pred -HHHHHHHHHHHHHhhcC-CCCCcc
Confidence 45899999999999733 344354
No 80
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=2.1e-42 Score=365.80 Aligned_cols=282 Identities=17% Similarity=0.226 Sum_probs=218.8
Q ss_pred CcEEEEE-cCcEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCC-CccccccCchHHHHHhccCCHH
Q 016955 12 NMVLVEE-GASSRTIILNRP-NVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNG-RSFCAGGDVVTLYRLLSKGRVE 88 (380)
Q Consensus 12 ~~v~~~~-~~~v~~i~lnrp-~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g-~~F~~G~Dl~~~~~~~~~~~~~ 88 (380)
..+.+++ +++|++|||||| ++.|+||.+|+.+|.++++.++.|+++++|||+|.+ ++||+|+|++++.... ...
T Consensus 5 ~~~~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~---~~~ 81 (708)
T PRK11154 5 SAFTLNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACK---TAQ 81 (708)
T ss_pred ceEEEEEcCCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccC---CHH
Confidence 4567777 789999999999 689999999999999999999999999999999875 8999999999875321 122
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecC--eeEecccccccccCCCchhHHHhhcCch
Q 016955 89 ECKECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEK--TVFAIPEVLIGSHPDAGASYYLSHLPGH 166 (380)
Q Consensus 89 ~~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~--a~f~~pe~~~G~~p~~g~~~~L~r~~g~ 166 (380)
....+......++.+|.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|++++|.
T Consensus 82 ~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~ 161 (708)
T PRK11154 82 EAEALARQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGV 161 (708)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCH
Confidence 23344455667888999999999999999999999999999999999986 5999999999999999999999999999
Q ss_pred H-HHHHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhh
Q 016955 167 L-GEYLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCF 245 (380)
Q Consensus 167 ~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f 245 (380)
. |++|++||++++|+||+++||||++++++++.+-..++.. +.. .+.. ++. .. ....
T Consensus 162 ~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~A~--------------~~~---~~~~-~~~-~~---~~~~ 219 (708)
T PRK11154 162 STALDMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAK--------------KGK---PARR-PLP-VR---ERLL 219 (708)
T ss_pred HHHHHHHHhCCcCCHHHHHHCCCCcEecChHHHHHHHHHHHH--------------hcC---CccC-cCC-ch---hhhc
Confidence 9 9999999999999999999999999998877432222211 100 0000 000 00 0000
Q ss_pred CCCCH--HHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHH
Q 016955 246 GHDTV--EEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFC 323 (380)
Q Consensus 246 ~~~~~--~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~ 323 (380)
+.... ..+++.. ...+++-.+..-.|++.+|++++.+...++.+++..|.+.+..+ +.++|++
T Consensus 220 ~~~p~~~~~~~~~~------------~~~~~~~~~g~~~A~~~~k~~i~~~~~~~~~~~l~~E~~~~~~~---~~s~~~~ 284 (708)
T PRK11154 220 EGNPLGRALLFKQA------------RKKTLAKTQGNYPAPERILDVVRTGLEKGMSSGYEAEARAFGEL---AMTPESA 284 (708)
T ss_pred ccCchhHHHHHHHH------------HHHHHHhcccCChHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---hCCHHHH
Confidence 11111 1111211 12222223333479999999999998889999999999999998 7799999
Q ss_pred hhhhhhcccC
Q 016955 324 EGVRTRLVEK 333 (380)
Q Consensus 324 egv~a~l~~k 333 (380)
+|+++|+.++
T Consensus 285 ~~~~aF~~~~ 294 (708)
T PRK11154 285 ALRSIFFATT 294 (708)
T ss_pred HHHHHHHHHH
Confidence 9999999754
No 81
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=100.00 E-value=5.8e-42 Score=328.73 Aligned_cols=286 Identities=19% Similarity=0.246 Sum_probs=212.0
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCC-CccccccCchHHHHHhccCCHHHHHHHHHHHHHH
Q 016955 22 SRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNG-RSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSL 100 (380)
Q Consensus 22 v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l 100 (380)
+++|+||||+++|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++..... +.......+...++++
T Consensus 38 ~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~-~~~~~~~~~~~~~~~l 116 (360)
T TIGR03200 38 NAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYA-GNPQEYRQYMRLFNDM 116 (360)
T ss_pred EEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcc-cChhHHHHHHHHHHHH
Confidence 455999999999999999999999999999999999999999999 79999999998764321 1222334455556678
Q ss_pred HHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchH-HHHHhhcCCCcC
Q 016955 101 MYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHL-GEYLGLTGGRLS 179 (380)
Q Consensus 101 ~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~-a~~l~ltG~~i~ 179 (380)
+..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. |++|+++|++++
T Consensus 117 ~~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~s 196 (360)
T TIGR03200 117 VSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWS 196 (360)
T ss_pred HHHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCc
Confidence 8899999999999999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred HHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcc---hhhhhHHHHhhhhCCCCHHHHHHH
Q 016955 180 GEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNEN---SILHRVETLNKCFGHDTVEEIIGA 256 (380)
Q Consensus 180 a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~f~~~~~~~i~~~ 256 (380)
|+||+++|||++++|+.+++. ..... +.-.-...+..|....+.... .+......++++=. ....+-
T Consensus 197 A~EA~~~GLVd~VVp~~~~~~---~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~--~~~~l~-- 266 (360)
T TIGR03200 197 AHKAKRLGIIMDVVPALKVDG---KFVAN---PLVVTDRYLDEFGRIVHGEFKAGDELKAGKELIKQGTI--DLSLLD-- 266 (360)
T ss_pred HHHHHHcCChheecCchhcCc---chhcC---cccchHHHHHHHhHHhcCCCcchhHHHHHHHHHhcccc--hHhHHH--
Confidence 999999999999999887621 11000 001112223333322222111 12222223322100 111111
Q ss_pred HHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhhhhhhccc
Q 016955 257 LESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEGVRTRLVE 332 (380)
Q Consensus 257 L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~egv~a~l~~ 332 (380)
+-..+++.++....|.++.-+++-++..........-+.-...+... + ..+..+|++||-+.
T Consensus 267 ----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~ 328 (360)
T TIGR03200 267 ----------EAVEALCAKLLNTFPECLTKSIEELRKPKLFAWNQNKENSRAWLALN---M-MNEARTGFRAFNEG 328 (360)
T ss_pred ----------HHHHHHHHHHHHhchHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHhh---c-ccccchhhHHHhcc
Confidence 11224677788889999999999999776655554444444444333 2 47899999999974
No 82
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=9.1e-42 Score=360.22 Aligned_cols=278 Identities=17% Similarity=0.239 Sum_probs=217.2
Q ss_pred EEEcCcEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHHhcCCceEEEE-EeCCCccccccCchHHHHHhccCCHHHHHHH
Q 016955 16 VEEGASSRTIILNRP-NVLNALLTPMGVRMTKLYESWEKDSRVGFVVI-KGNGRSFCAGGDVVTLYRLLSKGRVEECKEC 93 (380)
Q Consensus 16 ~~~~~~v~~i~lnrp-~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl-~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~ 93 (380)
.+++++|++|||||| ++.|+||.+|+.+|.++|+.++.|+++++||| +|.|++||+|+|++++.... .......+
T Consensus 5 ~~~~~~Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~---~~~~~~~~ 81 (699)
T TIGR02440 5 TVREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQ---TAGEAKAL 81 (699)
T ss_pred EEcCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccC---ChhHHHHH
Confidence 345789999999999 68999999999999999999999999999986 57789999999999875321 12233344
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecC--eeEecccccccccCCCchhHHHhhcCchH-HHH
Q 016955 94 FRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEK--TVFAIPEVLIGSHPDAGASYYLSHLPGHL-GEY 170 (380)
Q Consensus 94 ~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~--a~f~~pe~~~G~~p~~g~~~~L~r~~g~~-a~~ 170 (380)
....+.++..+.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|++++|.. +++
T Consensus 82 ~~~~~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~~ 161 (699)
T TIGR02440 82 AQQGQVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALD 161 (699)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHHH
Confidence 556677888999999999999999999999999999999999986 79999999999999999999999999999 999
Q ss_pred HhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCCC--
Q 016955 171 LGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGHD-- 248 (380)
Q Consensus 171 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~-- 248 (380)
|++||+.++|++|+++||||+++|++++.....++..-. .+..... . .-.+.-...
T Consensus 162 llltG~~~~a~eA~~~GLV~~vv~~~~l~~~a~~~A~~~------------------~~~~~~~-~---~~~~~~~~~~~ 219 (699)
T TIGR02440 162 MILTGKQLRAKQALKLGLVDDVVPQSILLDTAVEMALKG------------------KPIRKPL-S---LQERLLEGTPL 219 (699)
T ss_pred HHHcCCcCCHHHHHhCCCCcEecChhHHHHHHHHHHHhC------------------CCCCCCc-c---chhhhcccCch
Confidence 999999999999999999999999988743322221100 0000000 0 000000110
Q ss_pred CHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhhhhh
Q 016955 249 TVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEGVRT 328 (380)
Q Consensus 249 ~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~egv~a 328 (380)
....+++. +.+.+++-.+..-.|.+.+|++++.+...++.+++..|.+.+..+ +.++|.++++++
T Consensus 220 a~~~~~~~------------~~k~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~---~~s~~~~~~~~~ 284 (699)
T TIGR02440 220 GRALLFDQ------------AAKKTAKKTQGNYPAAERILDVVRQGLAQGMQKGLDAEARAFGEL---VMTPESAALRSI 284 (699)
T ss_pred hHHHHHHH------------HHHHHHHhcccCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh---cCCHHHHHHHHH
Confidence 01111111 112223334445678899999999999999999999999999999 789999999999
Q ss_pred hcccC
Q 016955 329 RLVEK 333 (380)
Q Consensus 329 ~l~~k 333 (380)
|+..+
T Consensus 285 f~~~~ 289 (699)
T TIGR02440 285 FFATT 289 (699)
T ss_pred HHHHH
Confidence 99754
No 83
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=4.7e-41 Score=303.03 Aligned_cols=256 Identities=23% Similarity=0.317 Sum_probs=229.6
Q ss_pred CCCCCcEEEEEcCcEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCC
Q 016955 8 NDADNMVLVEEGASSRTIILN-RPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGR 86 (380)
Q Consensus 8 ~~~~~~v~~~~~~~v~~i~ln-rp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~ 86 (380)
.+.+..+.+++++++.+|.+| ||++.|+++.+|+.++..+|..+..|+++..++++|.|++||+|.|+..+........
T Consensus 3 ~~~~~~~vv~~~~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~ 82 (266)
T KOG0016|consen 3 AMRYREIVVTRENGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDA 82 (266)
T ss_pred cccccceEEEecCCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCCCcc
Confidence 346778999999999999999 9999999999999999999999999999999999999999999999999876543322
Q ss_pred HH---HHHHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhc
Q 016955 87 VE---ECKECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHL 163 (380)
Q Consensus 87 ~~---~~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~ 163 (380)
.+ ........+...+..+..+|||+||.|||+|+|.|+.+...||+++|+|+++|..|++.+|++|.+|+++.||++
T Consensus 83 ~~~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~i 162 (266)
T KOG0016|consen 83 NEESDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPKI 162 (266)
T ss_pred cccchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeehHh
Confidence 22 233334444457788899999999999999999999999999999999999999999999999999999999999
Q ss_pred CchH-HHHHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHh
Q 016955 164 PGHL-GEYLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLN 242 (380)
Q Consensus 164 ~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 242 (380)
+|.. |.+|++.|++++|+||...|||+++++.+.+.+ +
T Consensus 163 mG~~~A~E~ll~~~kltA~Ea~~~glVskif~~~tf~~--~--------------------------------------- 201 (266)
T KOG0016|consen 163 MGSASANEMLLFGEKLTAQEACEKGLVSKIFPAETFNE--E--------------------------------------- 201 (266)
T ss_pred hchhhHHHHHHhCCcccHHHHHhcCchhhhcChHHHHH--H---------------------------------------
Confidence 9999 999999999999999999999999999977642 1
Q ss_pred hhhCCCCHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcH
Q 016955 243 KCFGHDTVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDF 322 (380)
Q Consensus 243 ~~f~~~~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~ 322 (380)
+...++++++.||.+++..|++++......+..+.+.|.+..... |.++|+
T Consensus 202 --------------------------v~~~ikq~s~l~p~sl~~~K~L~rs~~k~~l~~an~~E~~~l~~~---W~s~e~ 252 (266)
T KOG0016|consen 202 --------------------------VLKKIKQYSKLSPESLLGMKKLLRSNIKEELIKANEEECNVLLKQ---WVSAEC 252 (266)
T ss_pred --------------------------HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh---ccChHH
Confidence 125578999999999999999999988889999999999999999 889999
Q ss_pred HhhhhhhcccC
Q 016955 323 CEGVRTRLVEK 333 (380)
Q Consensus 323 ~egv~a~l~~k 333 (380)
.+.+++|+.++
T Consensus 253 ~~~~~~~~~~~ 263 (266)
T KOG0016|consen 253 LARFKQYLSKK 263 (266)
T ss_pred HHHHHHHhccc
Confidence 99999999865
No 84
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=100.00 E-value=9.4e-41 Score=310.44 Aligned_cols=182 Identities=15% Similarity=0.153 Sum_probs=156.7
Q ss_pred EEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCce-EEEEEeCCCccccccCchHHHHHhccCCHHHHHH
Q 016955 14 VLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVG-FVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKE 92 (380)
Q Consensus 14 v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~-~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~ 92 (380)
+.++++++|++|+||||++ |+++.+|+.+|.++++.++.|++++ +||++|.|++||+|+|++++... .........
T Consensus 2 ~~~~~~~~v~~i~Lnrp~~-Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~--~~~~~~~~~ 78 (239)
T PLN02267 2 CTLEKRGNLFILTLTGDGE-HRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAA--GSAPSRLHL 78 (239)
T ss_pred ceeEecCCEEEEEeCCCCc-CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhcc--ccCHHHHHH
Confidence 6788899999999999986 9999999999999999999999865 77789999999999999876421 111222233
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEee-cCeeEecccccccccCCCchhHHHhhcCchH-H-H
Q 016955 93 CFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIAT-EKTVFAIPEVLIGSHPDAGASYYLSHLPGHL-G-E 169 (380)
Q Consensus 93 ~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~-~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~-a-~ 169 (380)
+.+.+.+++..+.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|+++++.+|++++|.. + +
T Consensus 79 ~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG~~~a~~ 158 (239)
T PLN02267 79 MVAKLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSPAARR 158 (239)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcChHHHHH
Confidence 44566778889999999999999999999999999999999998 5689999999999974445678999999987 7 6
Q ss_pred HHhhcCCCcCHHHHHHcCCcccccCC-CCh
Q 016955 170 YLGLTGGRLSGEELLACGFATHYIPS-ARL 198 (380)
Q Consensus 170 ~l~ltG~~i~a~eA~~~GLv~~vv~~-~~l 198 (380)
+|+++|++++|+||+++||||+++|+ +++
T Consensus 159 ~llltG~~~~a~eA~~~Glv~~vv~~~~~l 188 (239)
T PLN02267 159 DVLLRAAKLTAEEAVEMGIVDSAHDSAEET 188 (239)
T ss_pred HHHHcCCcCCHHHHHHCCCcceecCCHHHH
Confidence 89999999999999999999999985 344
No 85
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=8.4e-41 Score=290.01 Aligned_cols=254 Identities=21% Similarity=0.283 Sum_probs=227.5
Q ss_pred CcEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHH
Q 016955 12 NMVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECK 91 (380)
Q Consensus 12 ~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~ 91 (380)
...+++..++|..|+||+|+++|+|+.+|+.+|.+.|....++.++|+|||+..|+.||+|.||+++.+.. ..+.-.
T Consensus 32 ~~g~~~~~~gvR~i~l~npKk~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKELt~e~---g~d~ha 108 (287)
T KOG1682|consen 32 DLGLVKEHNGVREITLNNPKKLNTLSLAMMCALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKELTNEP---GSDIHA 108 (287)
T ss_pred cccccccccceeeeeecCccccchhhHHHHHHHHHHHhhcccccceeEEEEecCCccccccccHHHhhcCc---cchHHH
Confidence 34566677899999999999999999999999999999999889999999999999999999999997632 334456
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchH-HHH
Q 016955 92 ECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHL-GEY 170 (380)
Q Consensus 92 ~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~-a~~ 170 (380)
..++...+++..|+++|+|||+-|||+|..+|+.|..+||++||+++++|..|...+|+++...|. -|.|.+++. +.|
T Consensus 109 evFqtc~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPGv-AlaRavpRkva~~ 187 (287)
T KOG1682|consen 109 EVFQTCTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPGV-ALARAVPRKVAAY 187 (287)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcch-hHhhhcchhHHHH
Confidence 778889999999999999999999999999999999999999999999999999999998876554 488888888 999
Q ss_pred HhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCCCCH
Q 016955 171 LGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGHDTV 250 (380)
Q Consensus 171 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 250 (380)
|++||.+|++++|+..|||+++||.++++. .
T Consensus 188 ML~Tg~Pi~~eeAl~sGlvskvVp~~el~~---e---------------------------------------------- 218 (287)
T KOG1682|consen 188 MLMTGLPITGEEALISGLVSKVVPAEELDK---E---------------------------------------------- 218 (287)
T ss_pred HHHhCCCCchHHHHHhhhhhhcCCHHHHHH---H----------------------------------------------
Confidence 999999999999999999999999998852 1
Q ss_pred HHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhhhhhhc
Q 016955 251 EEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEGVRTRL 330 (380)
Q Consensus 251 ~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~egv~a~l 330 (380)
+.+++..|-..|...+.+.|+.+.....++-.+++....+.+... +.-.|.+|||.+|+
T Consensus 219 ------------------~~~i~~~i~~~srav~slgk~f~y~q~~ms~~ea~~~~~~~m~~n---~ql~d~kegiasf~ 277 (287)
T KOG1682|consen 219 ------------------IEEITNAIKAKSRAVISLGKEFYYKQLAMSQAEAFSAAQEKMCEN---FQLGDTKEGIASFF 277 (287)
T ss_pred ------------------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhc---ccccchHHHHHHHh
Confidence 125678899999999999999999888888889999888888877 67899999999999
Q ss_pred ccCCCCCCCCC
Q 016955 331 VEKSFAPKWDP 341 (380)
Q Consensus 331 ~~k~r~P~w~~ 341 (380)
+ | |+|.|.|
T Consensus 278 ~-k-rp~~~~h 286 (287)
T KOG1682|consen 278 E-K-RPPNWKH 286 (287)
T ss_pred c-c-CCCCcCC
Confidence 6 6 8999987
No 86
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=100.00 E-value=5.7e-40 Score=346.67 Aligned_cols=288 Identities=17% Similarity=0.212 Sum_probs=218.1
Q ss_pred cEEEEE-cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHH
Q 016955 13 MVLVEE-GASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECK 91 (380)
Q Consensus 13 ~v~~~~-~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~ 91 (380)
.+.++. .++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++...... ......
T Consensus 7 ~i~~~~~~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~-~~~~~~ 85 (714)
T TIGR02437 7 TIQVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFAL-PDAELI 85 (714)
T ss_pred eEEEEEccCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccC-CHHHHH
Confidence 577774 789999999999999999999999999999999999999999999999999999999998642111 222333
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchH-HHH
Q 016955 92 ECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHL-GEY 170 (380)
Q Consensus 92 ~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~-a~~ 170 (380)
.+.+..+.++..|..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.. |++
T Consensus 86 ~~~~~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~~~A~~ 165 (714)
T TIGR02437 86 QWLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALE 165 (714)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCHHHHHH
Confidence 4555567788999999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred HhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhhhhCCCCH
Q 016955 171 LGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNKCFGHDTV 250 (380)
Q Consensus 171 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 250 (380)
|++||++++|++|+++||||+++|++++.....++..-...+. +..... ..+....+. .+.+.++|.
T Consensus 166 llltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~~~~~~------~~~~~~-~~~~~~~~~--~~~~~~~~~---- 232 (714)
T TIGR02437 166 WIASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKDAINGK------LDWKAK-RQPKLEPLK--LSKIEAMMS---- 232 (714)
T ss_pred HHHcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHHHHHHhhcC------Cccccc-CCCCccccc--ccchHHHHH----
Confidence 9999999999999999999999998877433222211000000 000000 000000000 000111110
Q ss_pred HHHHHHHHhcccccchHHHHH-HHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhhhhhh
Q 016955 251 EEIIGALESEVAETNDEWCLS-TLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEGVRTR 329 (380)
Q Consensus 251 ~~i~~~L~~~~~~~~~~~a~~-~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~egv~a~ 329 (380)
.+++.+ ..++-.+.-| |-....+.+..+...++++++..|.+.+..+ +.+++.+..++.|
T Consensus 233 ---------------~~~~~~~~~~~~~~~~p-ap~~~~~~v~~~~~~~~~~gl~~E~~~f~~l---~~s~~a~~l~~~f 293 (714)
T TIGR02437 233 ---------------FTTAKGMVAQVAGPHYP-APMTAVKTIEKAARFGRDKALEIEAKGFVKL---AKTSEAKALIGLF 293 (714)
T ss_pred ---------------HHHHHHHHHHhhcCCCC-CHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---hCCHHHHHHHHHH
Confidence 111222 2233333333 4444556888888889999999999999999 7799999999999
Q ss_pred cccC
Q 016955 330 LVEK 333 (380)
Q Consensus 330 l~~k 333 (380)
+.++
T Consensus 294 f~~r 297 (714)
T TIGR02437 294 LNDQ 297 (714)
T ss_pred hhhH
Confidence 9854
No 87
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=100.00 E-value=6.7e-39 Score=339.30 Aligned_cols=302 Identities=17% Similarity=0.219 Sum_probs=216.7
Q ss_pred CCCCcEEEEEcCcEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHHhcCCceEE-EEEeCCCccccccCchHHHHHhccCC
Q 016955 9 DADNMVLVEEGASSRTIILNRPN-VLNALLTPMGVRMTKLYESWEKDSRVGFV-VIKGNGRSFCAGGDVVTLYRLLSKGR 86 (380)
Q Consensus 9 ~~~~~v~~~~~~~v~~i~lnrp~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~v-Vl~g~g~~F~~G~Dl~~~~~~~~~~~ 86 (380)
+.+..+.++++++|++||||||+ +.|+||.+|+.+|.++++.++.|+++++| |++|.|++||+|+|++++... ..
T Consensus 10 ~~~~~~~~~~~~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~---~~ 86 (737)
T TIGR02441 10 MARTHRHYEVKGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAAC---KT 86 (737)
T ss_pred CCCCeEEEEEECCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhcc---CC
Confidence 44567899999999999999998 58999999999999999999999999965 569999999999999988531 12
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecC--eeEecccccccccCCCchhHHHhhcC
Q 016955 87 VEECKECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEK--TVFAIPEVLIGSHPDAGASYYLSHLP 164 (380)
Q Consensus 87 ~~~~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~--a~f~~pe~~~G~~p~~g~~~~L~r~~ 164 (380)
......+....+.++..+.++||||||+|||+|+|||++|+++||||||+++ ++|++||+++|++|++|++++|+|++
T Consensus 87 ~~~~~~~~~~~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprli 166 (737)
T TIGR02441 87 AQEVTQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLT 166 (737)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhh
Confidence 2334455566778899999999999999999999999999999999999987 58999999999999999999999999
Q ss_pred chH-HHHHhhcCCCcCHHHHHHcCCcccccCC--CChhHHHHHHHHhhccChhHHHHHHHHhcccC-CCCc-chhhhhHH
Q 016955 165 GHL-GEYLGLTGGRLSGEELLACGFATHYIPS--ARLPLIEEQLRTLAVHDFSAMETFLAKHSEHV-YPNE-NSILHRVE 239 (380)
Q Consensus 165 g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~--~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~ 239 (380)
|.. |++|++||++++|++|+++||||+++++ +++++++++...... ........+..... .... ........
T Consensus 167 G~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~---~~A~~~a~~l~~~~~~~~~~~~~~~~~~ 243 (737)
T TIGR02441 167 GVPAALDMMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLE---EVAVKFAQGLANGKLSINRDKGLVHKIT 243 (737)
T ss_pred CHHHHHHHHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHH---HHHHHHHHHhhcccCCccccccccCccc
Confidence 998 9999999999999999999999999986 322211111100000 00000000000000 0000 00000000
Q ss_pred HHhhhhCCC-CHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCC
Q 016955 240 TLNKCFGHD-TVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQI 318 (380)
Q Consensus 240 ~i~~~f~~~-~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~ 318 (380)
...++.+ ....+++..+ ..+.++ .+.-..|-..+.+.+..+...++++++..|.+.+..+ ..
T Consensus 244 --~~~~~~~~~~~~~~~~~~-----------~~~~~~-~~g~~~Ap~~~l~~v~~~~~~~~~~gl~~E~~~f~~l---~~ 306 (737)
T TIGR02441 244 --QYVMTNPFVRQQVYKTAE-----------DKVMKQ-TKGLYPAPLKILDVVRTGYDQGPDAGYEAESKAFGEL---SM 306 (737)
T ss_pred --hhhcccchhHHHHHHHHH-----------HHHHHh-ccCCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---hC
Confidence 0000000 0111222221 122333 2332345555677888888889999999999999999 67
Q ss_pred CCcHHhhhhhhcccC
Q 016955 319 SNDFCEGVRTRLVEK 333 (380)
Q Consensus 319 ~~d~~egv~a~l~~k 333 (380)
+++.+.-+..|+.++
T Consensus 307 s~~a~al~~~f~~~~ 321 (737)
T TIGR02441 307 TFESKALIGLFHGQT 321 (737)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999898888754
No 88
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=100.00 E-value=1.8e-40 Score=290.61 Aligned_cols=257 Identities=23% Similarity=0.326 Sum_probs=209.0
Q ss_pred CCCCcEEEEEc-CcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeC--C-CccccccCchHHHHHhcc
Q 016955 9 DADNMVLVEEG-ASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGN--G-RSFCAGGDVVTLYRLLSK 84 (380)
Q Consensus 9 ~~~~~v~~~~~-~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~--g-~~F~~G~Dl~~~~~~~~~ 84 (380)
..++.|++++. ++++.||||||+++|++.+..+.||.+++..+..|++|.+|||||. | .+||+|+|-+--.....-
T Consensus 15 ~~y~dI~Y~~~~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY 94 (282)
T COG0447 15 EGYEDITYEKSVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGY 94 (282)
T ss_pred CCcceeEEeeccCceEEEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCc
Confidence 45788999998 9999999999999999999999999999999999999999999986 5 899999997543321000
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcC
Q 016955 85 GRVEECKECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLP 164 (380)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~ 164 (380)
.+.+...++ ..-++.+.|+.+||||||.|+|+++|||-.|-+.||+.||+++|+|+....++|-+-++.++.+|+|.+
T Consensus 95 ~~d~~~~rL--nvLdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~V 172 (282)
T COG0447 95 VDDDGIPRL--NVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIV 172 (282)
T ss_pred cCCccCccc--chhhHHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHh
Confidence 000111111 233566788899999999999999999999999999999999999999999999998888888999999
Q ss_pred chH-HHHHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhcccCCCCcchhhhhHHHHhh
Q 016955 165 GHL-GEYLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEHVYPNENSILHRVETLNK 243 (380)
Q Consensus 165 g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 243 (380)
|.. |+++.+.++.++|++|+++|+||.|||.++|+. +.
T Consensus 173 GqKkArEIwfLcR~Y~A~eal~MGlVN~Vvp~~~LE~--e~--------------------------------------- 211 (282)
T COG0447 173 GQKKAREIWFLCRQYDAEEALDMGLVNTVVPHADLEK--ET--------------------------------------- 211 (282)
T ss_pred hhhhhHHhhhhhhhccHHHHHhcCceeeeccHHHHHH--HH---------------------------------------
Confidence 999 999999999999999999999999999988742 11
Q ss_pred hhCCCCHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHH
Q 016955 244 CFGHDTVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFC 323 (380)
Q Consensus 244 ~f~~~~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~ 323 (380)
. +.++.|...||.|++..|..++...+ .+ ..+ .++.--..++. ..+++.+
T Consensus 212 ----------------------v----~W~~E~l~kSP~AlR~LK~Afnad~D-Gl-aG~-q~~ag~at~L~-YmTdEa~ 261 (282)
T COG0447 212 ----------------------V----QWAREMLAKSPTALRMLKAAFNADCD-GL-AGL-QELAGNATLLY-YMTDEAQ 261 (282)
T ss_pred ----------------------H----HHHHHHHhcChHHHHHHHHHhcCCCc-hh-hHH-HHhcccceEEE-Eechhhh
Confidence 2 34688899999999999999985443 22 111 22222222322 3589999
Q ss_pred hhhhhhcccCCCCCCCC
Q 016955 324 EGVRTRLVEKSFAPKWD 340 (380)
Q Consensus 324 egv~a~l~~k~r~P~w~ 340 (380)
||-.||++ | |+|.|+
T Consensus 262 EGr~AF~e-K-R~Pdf~ 276 (282)
T COG0447 262 EGRDAFLE-K-RKPDFS 276 (282)
T ss_pred hhHHHHhh-c-cCCChH
Confidence 99999996 6 899986
No 89
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=100.00 E-value=4.5e-38 Score=283.50 Aligned_cols=184 Identities=36% Similarity=0.530 Sum_probs=170.6
Q ss_pred EEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHH
Q 016955 14 VLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKEC 93 (380)
Q Consensus 14 v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~ 93 (380)
+.+++++++++|+||+|++.|++|.+|+++|.++++.++.|+++++|||+|.|+.||+|+|+.++...... ......+
T Consensus 1 i~~~~~~~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~--~~~~~~~ 78 (195)
T cd06558 1 VLVERDGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDA--GEEARAF 78 (195)
T ss_pred CEEEEECCEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccccc--chhHHHH
Confidence 46788899999999999989999999999999999999999999999999999999999999998754221 1135677
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchH-HHHHh
Q 016955 94 FRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHL-GEYLG 172 (380)
Q Consensus 94 ~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~-a~~l~ 172 (380)
.+.++.++..+..+|||+||+|+|+|.|+|++++++||+||++++++|++||+++|++|++|++++|++++|.. +.+++
T Consensus 79 ~~~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~ 158 (195)
T cd06558 79 IRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELL 158 (195)
T ss_pred HHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999988 99999
Q ss_pred hcCCCcCHHHHHHcCCcccccCCCChh
Q 016955 173 LTGGRLSGEELLACGFATHYIPSARLP 199 (380)
Q Consensus 173 ltG~~i~a~eA~~~GLv~~vv~~~~l~ 199 (380)
++|+.++|+||+++|||+++++.+++.
T Consensus 159 l~g~~~~a~ea~~~Glv~~~~~~~~l~ 185 (195)
T cd06558 159 LTGRRISAEEALELGLVDEVVPDEELL 185 (195)
T ss_pred HcCCccCHHHHHHcCCCCeecChhHHH
Confidence 999999999999999999999987764
No 90
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=1.7e-37 Score=316.07 Aligned_cols=195 Identities=13% Similarity=0.160 Sum_probs=164.8
Q ss_pred CCCCCCCCCcEEEEEcCcEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHHHH-hcCCceEEEEEeC-CCcccc
Q 016955 4 LNDCNDADNMVLVEEGASSRTIILNRPN----------VLNALLTPMGVRMTKLYESWE-KDSRVGFVVIKGN-GRSFCA 71 (380)
Q Consensus 4 ~~~~~~~~~~v~~~~~~~v~~i~lnrp~----------~~Nal~~~~~~eL~~~l~~~~-~d~~v~~vVl~g~-g~~F~~ 71 (380)
|......++.+.++++++|++||||||+ ++|++|.+|+.+|.++|+.++ .|+++|+|||||. |++||+
T Consensus 3 ~~~~~~~~~~v~~~~~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~Fca 82 (546)
T TIGR03222 3 FRTEPSQYRHWKLTFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCS 82 (546)
T ss_pred ccCCCCCCceEEEEeeCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcC
Confidence 4555666788999999999999999976 899999999999999999999 7899999999997 599999
Q ss_pred ccCchHHHHHhccCCHHHHHHHH-HHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecC--eeEeccccc-
Q 016955 72 GGDVVTLYRLLSKGRVEECKECF-RTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEK--TVFAIPEVL- 147 (380)
Q Consensus 72 G~Dl~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~--a~f~~pe~~- 147 (380)
|+|++++...... .......+. .....+...+.++||||||+|||+|+|||++|+++||+||++++ ++|++||++
T Consensus 83 G~DL~~~~~~~~~-~~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~ 161 (546)
T TIGR03222 83 GANIFMLGLSTHA-WKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPL 161 (546)
T ss_pred CcCHHHHhccccc-hhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhc
Confidence 9999987432110 011111111 11223455677899999999999999999999999999999986 799999997
Q ss_pred ccccCCCchhHHHh--hcCchH-HHHHhhcCCCcCHHHHHHcCCcccccCCCChh
Q 016955 148 IGSHPDAGASYYLS--HLPGHL-GEYLGLTGGRLSGEELLACGFATHYIPSARLP 199 (380)
Q Consensus 148 ~G~~p~~g~~~~L~--r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~ 199 (380)
+|++|++|+..++. +++|.. |++|++||++++|+||++|||||++||++++.
T Consensus 162 lGl~P~~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~ 216 (546)
T TIGR03222 162 LGVLPGTGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPSQFD 216 (546)
T ss_pred cCcCCccchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeChHHHH
Confidence 99999999998887 688988 99999999999999999999999999988764
No 91
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=1.4e-36 Score=310.33 Aligned_cols=195 Identities=13% Similarity=0.170 Sum_probs=163.3
Q ss_pred CCCCCCCCCcEEEEEcCcEEEEEEcCC-------C---CCCCCCHHHHHHHHHHHHHHH-hcCCceEEEEEeCC-Ccccc
Q 016955 4 LNDCNDADNMVLVEEGASSRTIILNRP-------N---VLNALLTPMGVRMTKLYESWE-KDSRVGFVVIKGNG-RSFCA 71 (380)
Q Consensus 4 ~~~~~~~~~~v~~~~~~~v~~i~lnrp-------~---~~Nal~~~~~~eL~~~l~~~~-~d~~v~~vVl~g~g-~~F~~ 71 (380)
|....+.++.+.++++++|++|||||| + +.|+++.+|+.+|.+++++++ .|+++++|||||.+ ++||+
T Consensus 7 ~~~~~~~~~~~~~e~~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~Fca 86 (550)
T PRK08184 7 FQTEPSQYRHWKLSFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCS 86 (550)
T ss_pred cccCCCCCceEEEEeeCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCC
Confidence 444456788999999999999999965 3 899999999999999999998 78999999999985 99999
Q ss_pred ccCchHHHHHhccCCHHHHHHHHHH-HHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecC--eeEeccccc-
Q 016955 72 GGDVVTLYRLLSKGRVEECKECFRT-FYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEK--TVFAIPEVL- 147 (380)
Q Consensus 72 G~Dl~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~--a~f~~pe~~- 147 (380)
|+|++.+...... .......+... ...+...+.++||||||+|||+|+|||++|+++|||||++++ ++|++||++
T Consensus 87 G~DL~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~ 165 (550)
T PRK08184 87 GANIFMLGGSSHA-WKVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPL 165 (550)
T ss_pred ccCHHhHhccccc-hhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhc
Confidence 9999987432110 00011111111 122445677899999999999999999999999999999987 899999997
Q ss_pred ccccCCCchhHHHh--hcCchH-HHHHhhcCCCcCHHHHHHcCCcccccCCCChh
Q 016955 148 IGSHPDAGASYYLS--HLPGHL-GEYLGLTGGRLSGEELLACGFATHYIPSARLP 199 (380)
Q Consensus 148 ~G~~p~~g~~~~L~--r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~ 199 (380)
+|++|++|++++|+ +++|.. +.+|++||+.++|+||+++||||++||++++.
T Consensus 166 ~Gl~P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~d~l~ 220 (550)
T PRK08184 166 LGVLPGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKPSKFD 220 (550)
T ss_pred cccCCCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHHHHH
Confidence 99999999999998 678988 99999999999999999999999999987663
No 92
>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A.
Probab=99.91 E-value=1.8e-24 Score=178.97 Aligned_cols=117 Identities=44% Similarity=0.860 Sum_probs=100.5
Q ss_pred hhhhHHHHhhhhCCCCHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Q 016955 234 ILHRVETLNKCFGHDTVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRM 313 (380)
Q Consensus 234 ~~~~~~~i~~~f~~~~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~ 313 (380)
+..+...|++||+++++++|+++|++. +.+||.++++.|.+.||+|+++|.++++++...++.++|..|+++..++
T Consensus 2 L~~~~~~I~~~F~~~s~~eI~~~L~~~----~~~~a~~~~~~l~~~SP~Sl~vt~~~l~~~~~~sl~e~l~~E~~~a~~~ 77 (118)
T PF13766_consen 2 LAEHLEAIDRCFSADSVEEIIEALEAD----GDEWAQKTLETLRSGSPLSLKVTFEQLRRGRNLSLAECLRMEYRLASRC 77 (118)
T ss_dssp CHHCHHHHHHHTTSSSHHHHHHHHHHH----S-HHHHHHHHHHCCS-HHHHHHHHHHHHCCTTS-HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHcc----CcHHHHHHHHHHHHCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHH
Confidence 456788999999999999999999984 6899999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCcHHhhhhhhcccCCCCCCCCCCCcCCCCHHHHHhhcc
Q 016955 314 ISRQISNDFCEGVRTRLVEKSFAPKWDPPCLEQVTEEMVNAYFE 357 (380)
Q Consensus 314 ~~~~~~~d~~egv~a~l~~k~r~P~w~~~~~~~v~~~~v~~~f~ 357 (380)
+..+||.|||+|.|+||++.|+|+|+++++|++++|++||+
T Consensus 78 ---~~~~DF~EGVRA~LIDKd~~P~W~p~~l~~V~~~~V~~~f~ 118 (118)
T PF13766_consen 78 ---MRHPDFAEGVRALLIDKDKNPKWSPASLEDVSDEDVDSFFE 118 (118)
T ss_dssp ---HCCSCHHHHHHHHTTS-------SSSSCCCS-HHHHHHHCS
T ss_pred ---hccchHHHHHHHHHhcCCCCCCCCCCChHHCCHHHHHHHhC
Confidence 56899999999999999999999999999999999999995
No 93
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.79 E-value=5.8e-19 Score=156.92 Aligned_cols=140 Identities=16% Similarity=0.094 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcch
Q 016955 39 PMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLMYRLNTYLKPHVAIMNGI 118 (380)
Q Consensus 39 ~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIaav~G~ 118 (380)
-.+.+|.++++.+..|+++++|||++ +|.|+|+.... .+.+++..+.+++|||||+++|.
T Consensus 22 ~~~~~l~~~l~~a~~d~~v~~vvl~~----~~~gg~~~~~~----------------~~~~~i~~~~~~~kpVia~v~G~ 81 (177)
T cd07014 22 VSGDTTAAQIRDARLDPKVKAIVLRV----NSPGGSVTASE----------------VIRAELAAARAAGKPVVASGGGN 81 (177)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEe----eCCCcCHHHHH----------------HHHHHHHHHHhCCCCEEEEECCc
Confidence 35789999999999999999999997 68898876421 12345666778999999999999
Q ss_pred hcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhH--------HHhhcCc--hH-HHHHhhcCCCcCHHHHHHcC
Q 016955 119 TMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASY--------YLSHLPG--HL-GEYLGLTGGRLSGEELLACG 187 (380)
Q Consensus 119 a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~--------~L~r~~g--~~-a~~l~ltG~~i~a~eA~~~G 187 (380)
|.|+|+.|+++||++++++++.|+++.+..+..+...... .+++..| .. ..+++..|..++|++|++.|
T Consensus 82 a~g~g~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~G 161 (177)
T cd07014 82 AASGGYWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANG 161 (177)
T ss_pred hhHHHHHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcC
Confidence 9999999999999999999999999987766433222222 3444455 45 67888999999999999999
Q ss_pred CcccccCCCCh
Q 016955 188 FATHYIPSARL 198 (380)
Q Consensus 188 Lv~~vv~~~~l 198 (380)
|||++.+.+++
T Consensus 162 LVD~v~~~~e~ 172 (177)
T cd07014 162 LVDSLGSFDDA 172 (177)
T ss_pred CcccCCCHHHH
Confidence 99999987654
No 94
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.78 E-value=3.3e-18 Score=153.36 Aligned_cols=145 Identities=13% Similarity=0.093 Sum_probs=116.3
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHHHHH
Q 016955 23 RTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLMY 102 (380)
Q Consensus 23 ~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 102 (380)
++|.|+. .++..+...+.+.|+.+..++ ++.|+|.=. |-|+++..-. .++.
T Consensus 2 ~vv~i~g-----~I~~~~~~~l~~~l~~a~~~~-~~~vvl~In----SpGG~v~~~~-------------------~i~~ 52 (187)
T cd07020 2 YVLEING-----AITPATADYLERAIDQAEEGG-ADALIIELD----TPGGLLDSTR-------------------EIVQ 52 (187)
T ss_pred EEEEEee-----EEChHHHHHHHHHHHHHHhCC-CCEEEEEEE----CCCCCHHHHH-------------------HHHH
Confidence 5667753 367778889999999998765 788888633 5566654321 2344
Q ss_pred HHhcCCCcEEEEEc---chhcchHhHHhhhCCeeEeecCeeEecccccccccCCC--------------chhHHHhhcCc
Q 016955 103 RLNTYLKPHVAIMN---GITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDA--------------GASYYLSHLPG 165 (380)
Q Consensus 103 ~l~~~~kPvIaav~---G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~--------------g~~~~L~r~~g 165 (380)
.|..+|||||++|+ |+|.|||+.|+++||+++++++++|++++...|..+.. +....+++..|
T Consensus 53 ~l~~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G 132 (187)
T cd07020 53 AILASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRG 132 (187)
T ss_pred HHHhCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcC
Confidence 56689999999999 99999999999999999999999999999985544432 23456788888
Q ss_pred h--H-HHHHhhcCCCcCHHHHHHcCCcccccCCC
Q 016955 166 H--L-GEYLGLTGGRLSGEELLACGFATHYIPSA 196 (380)
Q Consensus 166 ~--~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~ 196 (380)
. . +.+++++|+.++|+||+++||||+++++.
T Consensus 133 ~~~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~ 166 (187)
T cd07020 133 RNAEWAEKAVRESLSLTAEEALKLGVIDLIAADL 166 (187)
T ss_pred CCHHHHHHHHHcCCeecHHHHHHcCCcccccCCH
Confidence 7 4 88999999999999999999999999885
No 95
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.61 E-value=2.1e-15 Score=137.83 Aligned_cols=156 Identities=16% Similarity=0.092 Sum_probs=108.5
Q ss_pred EEEEEEcCC--CCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHH
Q 016955 22 SRTIILNRP--NVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYS 99 (380)
Q Consensus 22 v~~i~lnrp--~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 99 (380)
|++|.++.| +..+..+.-++.+|.++|+.+..||++++|||+ .||.|+|+..+.. +.+
T Consensus 2 i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~----~~s~Gg~~~~~~~----------------~~~ 61 (211)
T cd07019 2 IGVVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLR----VNSPGGSVTASEV----------------IRA 61 (211)
T ss_pred EEEEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEE----EcCCCcCHHHHHH----------------HHH
Confidence 455555532 122333445689999999999999999999997 6999999976532 123
Q ss_pred HHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEeccc------------ccccccC---CCch--------
Q 016955 100 LMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPE------------VLIGSHP---DAGA-------- 156 (380)
Q Consensus 100 l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe------------~~~G~~p---~~g~-------- 156 (380)
.+..+..++|||||+++|.|.|+|+.|+++||++++++.+.|+..- -++|+-+ -.++
T Consensus 62 ~l~~~~~~~kpVia~v~g~a~s~gy~la~~aD~i~a~~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~~~ 141 (211)
T cd07019 62 ELAAARAAGKPVVVSAGGAAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITR 141 (211)
T ss_pred HHHHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEcCCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCCCC
Confidence 4566778899999999999999999999999999999998886422 1223211 1100
Q ss_pred ------hHHHhhc-----------------CchHHHHHhhcCCCcCHHHHHHcCCcccccCCCC
Q 016955 157 ------SYYLSHL-----------------PGHLGEYLGLTGGRLSGEELLACGFATHYIPSAR 197 (380)
Q Consensus 157 ------~~~L~r~-----------------~g~~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~ 197 (380)
-..+... +......-+..|..+++++|++.||||++..-++
T Consensus 142 ~~s~e~r~~~~~~ld~~~~~f~~~Va~~R~~~~~~l~~~~~~~~~~~~~A~~~GLvD~i~~~~~ 205 (211)
T cd07019 142 ALPPEAQLGLQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDD 205 (211)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHhcCCcEEeHHHHHHcCCcccCCCHHH
Confidence 0011100 1111233466789999999999999999875443
No 96
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.52 E-value=1.3e-13 Score=120.57 Aligned_cols=134 Identities=15% Similarity=0.100 Sum_probs=103.2
Q ss_pred CCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 016955 36 LLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLMYRLNTYLKPHVAIM 115 (380)
Q Consensus 36 l~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIaav 115 (380)
+++.++.+|.+.|+.++.|+++++|+|.. .|.|+|+.... .+...+..++||||+.+
T Consensus 8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~----~s~Gg~~~~~~-------------------~i~~~l~~~~kpvva~~ 64 (161)
T cd00394 8 IEDVSADQLAAQIRFAEADNSVKAIVLEV----NTPGGRVDAGM-------------------NIVDALQASRKPVIAYV 64 (161)
T ss_pred EccchHHHHHHHHHHHHhCCCCceEEEEE----ECCCcCHHHHH-------------------HHHHHHHHhCCCEEEEE
Confidence 66789999999999999999999999977 47777764421 23445667789999999
Q ss_pred cchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchh------HHH----hhc---------CchH-HHHHhhcC
Q 016955 116 NGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGAS------YYL----SHL---------PGHL-GEYLGLTG 175 (380)
Q Consensus 116 ~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~------~~L----~r~---------~g~~-a~~l~ltG 175 (380)
+|.|.++|+.|+++||.|++.+++.|++.....+.....+-. ..+ .+. .... ...++..|
T Consensus 65 ~g~~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~ 144 (161)
T cd00394 65 GGQAASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKD 144 (161)
T ss_pred CChhHHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCC
Confidence 999999999999999999999999999988876544322000 011 111 1222 45677789
Q ss_pred CCcCHHHHHHcCCcccc
Q 016955 176 GRLSGEELLACGFATHY 192 (380)
Q Consensus 176 ~~i~a~eA~~~GLv~~v 192 (380)
..++|+||+++||||++
T Consensus 145 ~~~~a~eA~~~GLvD~i 161 (161)
T cd00394 145 LVLTAQEALEYGLVDAL 161 (161)
T ss_pred cEEcHHHHHHcCCcCcC
Confidence 99999999999999975
No 97
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.50 E-value=2.2e-13 Score=124.71 Aligned_cols=96 Identities=17% Similarity=0.127 Sum_probs=74.7
Q ss_pred cCCCCCCC-CCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHHHHHHHhc
Q 016955 28 NRPNVLNA-LLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLMYRLNT 106 (380)
Q Consensus 28 nrp~~~Na-l~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 106 (380)
++|...|+ ++..++.+|.++|+.++.|+++++|||+. +|.|+++.... .+...+..+..
T Consensus 13 ~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~----~s~gg~~~~~~----------------~l~~~l~~~~~ 72 (214)
T cd07022 13 PRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDI----DSPGGEVAGVF----------------ELADAIRAARA 72 (214)
T ss_pred CCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEE----eCCCCcHHHHH----------------HHHHHHHHHhc
Confidence 34544554 45789999999999999999999999976 56676654321 12223333444
Q ss_pred CCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecc
Q 016955 107 YLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIP 144 (380)
Q Consensus 107 ~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~p 144 (380)
+|||||+++|.|.|+|+.++++||++++++.+.|+..
T Consensus 73 -~KpViA~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~i 109 (214)
T cd07022 73 -GKPIVAFVNGLAASAAYWIASAADRIVVTPTAGVGSI 109 (214)
T ss_pred -CCCEEEEECCchhhHHHHHHhcCCEEEEcCCCeEEee
Confidence 6999999999999999999999999999999998654
No 98
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.46 E-value=4.4e-13 Score=122.22 Aligned_cols=154 Identities=21% Similarity=0.180 Sum_probs=107.5
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHHHH
Q 016955 22 SRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLM 101 (380)
Q Consensus 22 v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 101 (380)
|++|.++.+=... .+.++.+|.++|+.+..|+++++|+|++ +|.|+|+.... .+.+.+
T Consensus 2 v~vi~i~g~i~~~--~~~~~~~l~~~l~~a~~d~~i~~ivl~~----~s~Gg~~~~~~----------------~i~~~i 59 (208)
T cd07023 2 IAVIDIEGTISDG--GGIGADSLIEQLRKAREDDSVKAVVLRI----NSPGGSVVASE----------------EIYREI 59 (208)
T ss_pred EEEEEEEEEEcCC--CCCCHHHHHHHHHHHHhCCCCcEEEEEE----ECCCCCHHHHH----------------HHHHHH
Confidence 5666666431000 3689999999999999999999999998 58898886521 123355
Q ss_pred HHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEeccccc------------ccccCCC---------chh---
Q 016955 102 YRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVL------------IGSHPDA---------GAS--- 157 (380)
Q Consensus 102 ~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~------------~G~~p~~---------g~~--- 157 (380)
..+..++|||||+++|.|.|+|+.|+++||++++++.+.|+..-+. +|+-+.. +-.
T Consensus 60 ~~~~~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~ 139 (208)
T cd07023 60 RRLRKAKKPVVASMGDVAASGGYYIAAAADKIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRP 139 (208)
T ss_pred HHHHhcCCcEEEEECCcchhHHHHHHhhCCEEEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCC
Confidence 6677889999999999999999999999999999999988643221 2322211 000
Q ss_pred ------HHHhhc---------------Cc--hHHHHHhhcCCCcCHHHHHHcCCcccccCCCC
Q 016955 158 ------YYLSHL---------------PG--HLGEYLGLTGGRLSGEELLACGFATHYIPSAR 197 (380)
Q Consensus 158 ------~~L~r~---------------~g--~~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~ 197 (380)
..+..+ -| .....-++.|..++|++|++.||||++...++
T Consensus 140 ~s~~~~e~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~~~~~~a~~A~~~gLiD~i~~~~~ 202 (208)
T cd07023 140 LTEEERAILQALVDDIYDQFVDVVAEGRGMSGERLDKLADGRVWTGRQALELGLVDELGGLDD 202 (208)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhcCCcEEEHHHHHHcCCCcccCCHHH
Confidence 001111 01 11223357889999999999999999975433
No 99
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.43 E-value=6.9e-13 Score=115.93 Aligned_cols=128 Identities=16% Similarity=0.197 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcch
Q 016955 39 PMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLMYRLNTYLKPHVAIMNGI 118 (380)
Q Consensus 39 ~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIaav~G~ 118 (380)
.+...+.+.|+.+..++.+. +.|.+ .|+++..- ..++..|..+++|||+.++|.
T Consensus 15 ~~~~~~~~~l~~~~~~~~i~-l~ins------pGG~~~~~-------------------~~i~~~i~~~~~pvi~~v~g~ 68 (160)
T cd07016 15 VTAKEFKDALDALGDDSDIT-VRINS------PGGDVFAG-------------------LAIYNALKRHKGKVTVKIDGL 68 (160)
T ss_pred cCHHHHHHHHHhccCCCCEE-EEEEC------CCCCHHHH-------------------HHHHHHHHhcCCCEEEEEcch
Confidence 56778888888887764333 44444 44443221 134556778899999999999
Q ss_pred hcchHhHHhhhCCeeEeecCeeEecccccccccCCCch---------------hHHHhhcCc--hH-HHHHhhcCCCcCH
Q 016955 119 TMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGA---------------SYYLSHLPG--HL-GEYLGLTGGRLSG 180 (380)
Q Consensus 119 a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~---------------~~~L~r~~g--~~-a~~l~ltG~~i~a 180 (380)
|.|+|+.++++||+|++++++.|+++....|..+.... ...+.+..| .. ...++.++..++|
T Consensus 69 a~s~g~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a 148 (160)
T cd07016 69 AASAASVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTA 148 (160)
T ss_pred HHhHHHHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcH
Confidence 99999999999999999999999998776665443221 223666667 34 6677777778999
Q ss_pred HHHHHcCCcccc
Q 016955 181 EELLACGFATHY 192 (380)
Q Consensus 181 ~eA~~~GLv~~v 192 (380)
+||+++||||++
T Consensus 149 ~eA~~~GliD~v 160 (160)
T cd07016 149 QEAVELGFADEI 160 (160)
T ss_pred HHHHHcCCCCcC
Confidence 999999999975
No 100
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.38 E-value=3.2e-12 Score=132.99 Aligned_cols=156 Identities=18% Similarity=0.185 Sum_probs=115.5
Q ss_pred EcCcEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHH
Q 016955 18 EGASSRTIILNRPN--VLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFR 95 (380)
Q Consensus 18 ~~~~v~~i~lnrp~--~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~ 95 (380)
.+++|++|+++.+= ..+..+....+.+.+.|+.+..|++|++|||+-. |.|++.....
T Consensus 306 ~~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrin----SpGGs~~ase---------------- 365 (584)
T TIGR00705 306 VQDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRIN----SPGGSVFASE---------------- 365 (584)
T ss_pred CCCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEec----CCCCCHHHHH----------------
Confidence 46789999998763 2344444456788899999999999999999976 3333332111
Q ss_pred HHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeE------eccc------ccccccCCCchhHHHhh-
Q 016955 96 TFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVF------AIPE------VLIGSHPDAGASYYLSH- 162 (380)
Q Consensus 96 ~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f------~~pe------~~~G~~p~~g~~~~L~r- 162 (380)
.+.+.+..+...+||||+.++|.|.+||+.++++||.++|++.+.+ +++. .++|+.|+...+..+..
T Consensus 366 ~i~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~ 445 (584)
T TIGR00705 366 IIRRELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANV 445 (584)
T ss_pred HHHHHHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCC
Confidence 1122334456678999999999999999999999999999999877 5553 57898887665543332
Q ss_pred ---------------------------cC----c--hHHHHHhhcCCCcCHHHHHHcCCccccc
Q 016955 163 ---------------------------LP----G--HLGEYLGLTGGRLSGEELLACGFATHYI 193 (380)
Q Consensus 163 ---------------------------~~----g--~~a~~l~ltG~~i~a~eA~~~GLv~~vv 193 (380)
.+ | ..+.+.+.+|+.++|++|+++||||++.
T Consensus 446 s~~~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig 509 (584)
T TIGR00705 446 SLLRPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALG 509 (584)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCC
Confidence 11 1 1256788999999999999999999994
No 101
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.33 E-value=1.4e-11 Score=112.33 Aligned_cols=148 Identities=17% Similarity=0.183 Sum_probs=101.7
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHHHH
Q 016955 22 SRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLM 101 (380)
Q Consensus 22 v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 101 (380)
|++|+++.+ ++ ....+|.++|+.+..|+++++|||++. |.|+++.... .+.
T Consensus 2 v~vi~i~g~-----i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~----s~Gg~~~~~~-------------------~l~ 52 (207)
T TIGR00706 2 IAILPVSGA-----IA-VSPEDFDKKIKRIKDDKSIKALLLRIN----SPGGTVVASE-------------------EIY 52 (207)
T ss_pred EEEEEEEEE-----Ee-cCHHHHHHHHHHHhhCCCccEEEEEec----CCCCCHHHHH-------------------HHH
Confidence 566666643 21 345789999999999999999999985 7887775432 233
Q ss_pred HHHhcCC--CcEEEEEcchhcchHhHHhhhCCeeEeecCeeEeccccc------------ccccCC---------Cch--
Q 016955 102 YRLNTYL--KPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVL------------IGSHPD---------AGA-- 156 (380)
Q Consensus 102 ~~l~~~~--kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~------------~G~~p~---------~g~-- 156 (380)
..|..++ ||||+.++|.|.|+|+.|+++||.+++++++.|+..-+. +|+-+. .+.
T Consensus 53 ~~i~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~ 132 (207)
T TIGR00706 53 EKLKKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPT 132 (207)
T ss_pred HHHHHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCC
Confidence 3445555 999999999999999999999999999999887663332 233110 000
Q ss_pred ---h----HHHh-----------------hcCchHHHHHhhcCCCcCHHHHHHcCCcccccCCCCh
Q 016955 157 ---S----YYLS-----------------HLPGHLGEYLGLTGGRLSGEELLACGFATHYIPSARL 198 (380)
Q Consensus 157 ---~----~~L~-----------------r~~g~~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l 198 (380)
+ ..+. |-+.....+=++.|..+++++|++.||||++...+++
T Consensus 133 ~~~s~~~~e~~~~~l~~~~~~f~~~va~~R~~~~~~~~~~~~~~~~~~~~A~~~gLvD~i~~~~~~ 198 (207)
T TIGR00706 133 RELTPEERDILQNLVNESYEQFVQVVAKGRNLPVEDVKKFADGRVFTGRQALKLRLVDKLGTEDDA 198 (207)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCCcccHHHHHHcCCCcccCCHHHH
Confidence 0 0110 1112122233478899999999999999999865554
No 102
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.26 E-value=7.5e-11 Score=104.69 Aligned_cols=140 Identities=17% Similarity=0.209 Sum_probs=102.7
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHHHHH
Q 016955 23 RTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLMY 102 (380)
Q Consensus 23 ~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 102 (380)
.+|.++. .+++.+...|.++|+.+..++ +..|+|.=. |.|+++.... .++.
T Consensus 2 ~vi~i~g-----~I~~~~~~~l~~~l~~a~~~~-~~~ivl~in----spGG~v~~~~-------------------~I~~ 52 (178)
T cd07021 2 YVIPIEG-----EIDPGLAAFVERALKEAKEEG-ADAVVLDID----TPGGRVDSAL-------------------EIVD 52 (178)
T ss_pred EEEEEee-----EECHHHHHHHHHHHHHHHhCC-CCeEEEEEE----CcCCCHHHHH-------------------HHHH
Confidence 4566653 367788889999999998886 777777654 5666654322 3456
Q ss_pred HHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCch--------hHH------HhhcCchH-
Q 016955 103 RLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGA--------SYY------LSHLPGHL- 167 (380)
Q Consensus 103 ~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~--------~~~------L~r~~g~~- 167 (380)
.|..+++|||+.|+|.|.|+|+.++++||++++++++.|+.+.. ++..|+ +.. ++..-|+.
T Consensus 53 ~l~~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~----v~~~~~~~~~~K~~~~~~~~~~~~A~~~gr~~ 128 (178)
T cd07021 53 LILNSPIPTIAYVNDRAASAGALIALAADEIYMAPGATIGAAEP----IPGDGNGAADEKVQSYWRAKMRAAAEKKGRDP 128 (178)
T ss_pred HHHhCCCCEEEEECCchHHHHHHHHHhCCeEEECCCCeEecCee----EcCCCccchhHHHHHHHHHHHHHHHHHhCCCH
Confidence 67789999999999999999999999999999999999999844 333332 111 22223432
Q ss_pred --HHHHhhcC-------------CCcCHHHHHHcCCcccccCC
Q 016955 168 --GEYLGLTG-------------GRLSGEELLACGFATHYIPS 195 (380)
Q Consensus 168 --a~~l~ltG-------------~~i~a~eA~~~GLv~~vv~~ 195 (380)
+..|+--. -.++++||++.|++|.+.++
T Consensus 129 ~~a~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~ 171 (178)
T cd07021 129 DIAEAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGS 171 (178)
T ss_pred HHHHHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECC
Confidence 45555444 26999999999999999865
No 103
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=99.20 E-value=6.2e-11 Score=109.15 Aligned_cols=143 Identities=16% Similarity=0.059 Sum_probs=101.8
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Q 016955 35 ALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLMYRLNTYLKPHVAI 114 (380)
Q Consensus 35 al~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIaa 114 (380)
.-+..++.+|.++|+++..|++|++|||+..+..| ++.++.++. +.+..+...+|||||.
T Consensus 25 ~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg-~~~~~~el~-------------------~~i~~~~~~~kpVia~ 84 (222)
T cd07018 25 ESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSG-GLAKLEELR-------------------QALERFRASGKPVIAY 84 (222)
T ss_pred CcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCC-CHHHHHHHH-------------------HHHHHHHHhCCeEEEE
Confidence 34567899999999999999999999999987666 555555542 2334455679999999
Q ss_pred EcchhcchHhHHhhhCCeeEeecCeeEeccccc------------ccccC---------CCchhHH-----------Hhh
Q 016955 115 MNGITMGGGAGLSVHGSFCIATEKTVFAIPEVL------------IGSHP---------DAGASYY-----------LSH 162 (380)
Q Consensus 115 v~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~------------~G~~p---------~~g~~~~-----------L~r 162 (380)
++| |.+||+.|+++||.+++.+.+.|+..-+. +|+-+ +.+..+. +..
T Consensus 85 ~~~-~~sggy~lasaad~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~ 163 (222)
T cd07018 85 ADG-YSQGQYYLASAADEIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQA 163 (222)
T ss_pred eCC-CCchhhhhhhhCCEEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHH
Confidence 998 78899999999999999999999885332 12211 1111111 000
Q ss_pred -----------------cCchHHHHHhhcCCCcCHHHHHHcCCcccccCCCCh
Q 016955 163 -----------------LPGHLGEYLGLTGGRLSGEELLACGFATHYIPSARL 198 (380)
Q Consensus 163 -----------------~~g~~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l 198 (380)
-+.....+-+..|..++|++|++.||||++...+++
T Consensus 164 ~l~~~~~~f~~~Va~~R~~~~~~~~~~~~~~~~~~~~A~~~GLvD~i~~~~e~ 216 (222)
T cd07018 164 LLDSLWDQYLADVAASRGLSPDALEALIDLGGDSAEEALEAGLVDGLAYRDEL 216 (222)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHCCCCCcCCcHHHH
Confidence 011112233456999999999999999999855443
No 104
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=98.78 E-value=9.7e-08 Score=84.09 Aligned_cols=144 Identities=13% Similarity=0.162 Sum_probs=103.8
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHHHHH
Q 016955 23 RTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLMY 102 (380)
Q Consensus 23 ~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 102 (380)
.+|.++. .+++.+..-|.+.++.++.+ +++.|+|.=. |-|+.+.... .++.
T Consensus 2 ~vi~i~G-----~I~~~~~~~l~~~l~~A~~~-~~~~i~l~in----SPGG~v~~~~-------------------~I~~ 52 (172)
T cd07015 2 YVAQIKG-----QITSYTYDQFDRYITIAEQD-NAEAIIIELD----TPGGRADAAG-------------------NIVQ 52 (172)
T ss_pred EEEEEee-----EECHhHHHHHHHHHHHHhcC-CCCeEEEEEE----CCCCCHHHHH-------------------HHHH
Confidence 4455543 37778888899999998765 4788888655 6666664322 2344
Q ss_pred HHhcCCCcEEEEEc---chhcchHhHHhhhCCeeEeecCeeEecccccccccCC----C-c---hhHHHh------hcCc
Q 016955 103 RLNTYLKPHVAIMN---GITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPD----A-G---ASYYLS------HLPG 165 (380)
Q Consensus 103 ~l~~~~kPvIaav~---G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~----~-g---~~~~L~------r~~g 165 (380)
.|...++||++.|. |.|.++|..++++||.+++.+++.++......|..+. . . .+..+. +.-|
T Consensus 53 ~i~~~~~pvv~~v~p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~G 132 (172)
T cd07015 53 RIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESG 132 (172)
T ss_pred HHHhcCcCEEEEEecCCCeehhHHHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHC
Confidence 55678999999999 9999999999999999999999999997765432120 0 0 011111 2223
Q ss_pred h--H-HHHHhhcCCCcCHHHHHHcCCcccccCC
Q 016955 166 H--L-GEYLGLTGGRLSGEELLACGFATHYIPS 195 (380)
Q Consensus 166 ~--~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~ 195 (380)
+ . +..++-....++++||+++|++|.++.+
T Consensus 133 r~~~~a~~~v~~~~~lta~EA~~~G~iD~ia~~ 165 (172)
T cd07015 133 RNATIAEEFITKDLSLTPEEALKYGVIEVVARD 165 (172)
T ss_pred cCHHHHHHHHHhhcCcCHHHHHHcCCceeeeCC
Confidence 3 2 5677778888999999999999999976
No 105
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=98.69 E-value=2.7e-07 Score=80.81 Aligned_cols=132 Identities=16% Similarity=0.117 Sum_probs=91.0
Q ss_pred CCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 016955 36 LLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLMYRLNTYLKPHVAIM 115 (380)
Q Consensus 36 l~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIaav 115 (380)
++..+..++...|..++.++..+.|+|.=. |.|+++..- ..++..|...++||++.+
T Consensus 9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~In----SpGG~v~~~-------------------~~i~~~i~~~~~~v~~~~ 65 (162)
T cd07013 9 VEDISANQFAAQLLFLGAVNPEKDIYLYIN----SPGGDVFAG-------------------MAIYDTIKFIKADVVTII 65 (162)
T ss_pred ECcHHHHHHHHHHHHHhcCCCCCCEEEEEE----CCCCcHHHH-------------------HHHHHHHHhcCCCceEEE
Confidence 567899999999999998877777777654 556654321 124455667889999999
Q ss_pred cchhcchHhHHhhhCC--eeEeecCeeEecccccccccCCCchh--H---------------HHhhcCch--H-HHHHhh
Q 016955 116 NGITMGGGAGLSVHGS--FCIATEKTVFAIPEVLIGSHPDAGAS--Y---------------YLSHLPGH--L-GEYLGL 173 (380)
Q Consensus 116 ~G~a~GgG~~lal~~D--~ria~~~a~f~~pe~~~G~~p~~g~~--~---------------~L~r~~g~--~-a~~l~l 173 (380)
.|.|.++|.-+++++| .|++.+++.|.+.....|.. +... . .+.+.-|. . ...++-
T Consensus 66 ~g~aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~~--g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~ 143 (162)
T cd07013 66 DGLAASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGTL--GDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLE 143 (162)
T ss_pred EeehhhHHHHHHHcCCCCcEEEecCEEEEEccCccccc--CCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHc
Confidence 9999999999999999 68888888877644322211 1111 0 11111232 2 344555
Q ss_pred cCCCcCHHHHHHcCCcccc
Q 016955 174 TGGRLSGEELLACGFATHY 192 (380)
Q Consensus 174 tG~~i~a~eA~~~GLv~~v 192 (380)
.+.-++|+||+++||||++
T Consensus 144 ~~~~~sa~eA~~~GliD~i 162 (162)
T cd07013 144 RDTWLSAREAVEYGFADTI 162 (162)
T ss_pred CCccccHHHHHHcCCCCcC
Confidence 6666799999999999975
No 106
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.68 E-value=2.2e-07 Score=84.16 Aligned_cols=136 Identities=18% Similarity=0.089 Sum_probs=87.2
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Q 016955 35 ALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLMYRLNTYLKPHVAI 114 (380)
Q Consensus 35 al~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIaa 114 (380)
.++..+...+...|..++.++..+-|.|.=. |.|+|+..- ..++..|...+.|+++.
T Consensus 39 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~In----SpGG~v~~g-------------------~~I~d~i~~~~~~v~t~ 95 (200)
T PRK00277 39 EVEDHMANLIVAQLLFLEAEDPDKDIYLYIN----SPGGSVTAG-------------------LAIYDTMQFIKPDVSTI 95 (200)
T ss_pred EECHHHHHHHHHHHHHhhccCCCCCEEEEEE----CCCCcHHHH-------------------HHHHHHHHhcCCCEEEE
Confidence 3788999999999998887644343444332 455554321 12334456678899999
Q ss_pred EcchhcchHhHHhhhCC--eeEeecCeeEecccccccccCCCchh------------------HHHhhcCch--H-HHHH
Q 016955 115 MNGITMGGGAGLSVHGS--FCIATEKTVFAIPEVLIGSHPDAGAS------------------YYLSHLPGH--L-GEYL 171 (380)
Q Consensus 115 v~G~a~GgG~~lal~~D--~ria~~~a~f~~pe~~~G~~p~~g~~------------------~~L~r~~g~--~-a~~l 171 (380)
+.|.|.++|..|+++++ .|++.+.+.|.+....-|.. |.+ ..+...-|. . ...+
T Consensus 96 ~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~~---G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~~ 172 (200)
T PRK00277 96 CIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQ---GQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEKD 172 (200)
T ss_pred EEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCccccc---CChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 99999999999988743 46666666655543321111 111 112222233 2 3455
Q ss_pred hhcCCCcCHHHHHHcCCcccccCCC
Q 016955 172 GLTGGRLSGEELLACGFATHYIPSA 196 (380)
Q Consensus 172 ~ltG~~i~a~eA~~~GLv~~vv~~~ 196 (380)
+-.+.-++|+||+++||||+|+.+.
T Consensus 173 ~~~~~~lsa~EA~e~GliD~Ii~~~ 197 (200)
T PRK00277 173 TDRDNFMSAEEAKEYGLIDEVLTKR 197 (200)
T ss_pred hhCCccccHHHHHHcCCccEEeecC
Confidence 5667789999999999999999753
No 107
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=98.56 E-value=1.3e-05 Score=75.05 Aligned_cols=138 Identities=17% Similarity=0.128 Sum_probs=96.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 016955 33 LNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLMYRLNTYLKPHV 112 (380)
Q Consensus 33 ~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvI 112 (380)
.-.++++-.....+.++.+++. ++-+|-|.-+++++. |.+-. .....+.+...+..+...++|+|
T Consensus 76 ~G~~~~~g~rKa~R~~~lA~~~-~lPvV~lvDtpGa~~-g~~aE-------------~~G~~~~ia~~~~~~s~~~VP~I 140 (256)
T PRK12319 76 FGQPHPEGYRKALRLMKQAEKF-GRPVVTFINTAGAYP-GVGAE-------------ERGQGEAIARNLMEMSDLKVPII 140 (256)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCcCC-CHhHH-------------hccHHHHHHHHHHHHhCCCCCEE
Confidence 4668899999999999888764 466676666544443 32211 11123445566777889999999
Q ss_pred EEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchH--HHHHhhcCCCcCHHHHHHcCCcc
Q 016955 113 AIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHL--GEYLGLTGGRLSGEELLACGFAT 190 (380)
Q Consensus 113 aav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~--a~~l~ltG~~i~a~eA~~~GLv~ 190 (380)
++|-|.|.|||+.....||++++.+++.++. .++-|++..+-+-.... +.+.+ .+++.++.+.|+||
T Consensus 141 sVI~G~~~gGgA~a~~~~D~v~m~~~a~~~v-------~~pe~~a~il~~~~~~a~~aa~~~----~~~a~~l~~~g~iD 209 (256)
T PRK12319 141 AIIIGEGGSGGALALAVADQVWMLENTMYAV-------LSPEGFASILWKDGSRATEAAELM----KITAGELLEMGVVD 209 (256)
T ss_pred EEEeCCcCcHHHHHhhcCCEEEEecCceEEE-------cCHHHHHHHHhcCcccHHHHHHHc----CCCHHHHHHCCCCc
Confidence 9999999999888888999999999988765 33334444443322221 33332 77999999999999
Q ss_pred cccCCC
Q 016955 191 HYIPSA 196 (380)
Q Consensus 191 ~vv~~~ 196 (380)
+|++..
T Consensus 210 ~ii~e~ 215 (256)
T PRK12319 210 KVIPEH 215 (256)
T ss_pred EecCCC
Confidence 999753
No 108
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.54 E-value=1.4e-06 Score=79.35 Aligned_cols=137 Identities=16% Similarity=0.083 Sum_probs=97.1
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Q 016955 35 ALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLMYRLNTYLKPHVAI 114 (380)
Q Consensus 35 al~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIaa 114 (380)
.++..+..++...|..++..+..+.|.|.=. |.|+++..-. .++..|...+.||++.
T Consensus 43 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN----SpGG~v~~g~-------------------~I~d~i~~~~~~v~t~ 99 (207)
T PRK12553 43 QVDDASANDVMAQLLVLESIDPDRDITLYIN----SPGGSVTAGD-------------------AIYDTIQFIRPDVQTV 99 (207)
T ss_pred eECHHHHHHHHHHHHHHHhCCCCCCEEEEEe----CCCCcHHHHH-------------------HHHHHHHhcCCCcEEE
Confidence 3789999999999999987654444444333 5555553321 2445566778899999
Q ss_pred EcchhcchHhHHhhhCC--eeEeecCeeEecccccc-cccCCCchh------------------HHHhhcCch--H-HHH
Q 016955 115 MNGITMGGGAGLSVHGS--FCIATEKTVFAIPEVLI-GSHPDAGAS------------------YYLSHLPGH--L-GEY 170 (380)
Q Consensus 115 v~G~a~GgG~~lal~~D--~ria~~~a~f~~pe~~~-G~~p~~g~~------------------~~L~r~~g~--~-a~~ 170 (380)
+.|.|.+.|.-|+++|| .|++.+++.|.+..... |.. .|.. ..+...-|. . ...
T Consensus 100 ~~G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~--~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~ 177 (207)
T PRK12553 100 CTGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGGI--RGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRK 177 (207)
T ss_pred EEeehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCCC--ccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999999999999 58999999999866543 211 1111 112222343 2 455
Q ss_pred HhhcCCCcCHHHHHHcCCcccccCCC
Q 016955 171 LGLTGGRLSGEELLACGFATHYIPSA 196 (380)
Q Consensus 171 l~ltG~~i~a~eA~~~GLv~~vv~~~ 196 (380)
++-.+.-++|+||+++||||+++++.
T Consensus 178 ~~~~~~~lta~EA~e~GliD~I~~~~ 203 (207)
T PRK12553 178 DTDRDKWLTAEEAKDYGLVDQIITSY 203 (207)
T ss_pred HHhcCccccHHHHHHcCCccEEcCch
Confidence 66778889999999999999999753
No 109
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.49 E-value=2.8e-08 Score=95.27 Aligned_cols=175 Identities=16% Similarity=0.027 Sum_probs=142.0
Q ss_pred EEEEcC--cEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCC-CccccccCchHHHHHhccCCHHHHH
Q 016955 15 LVEEGA--SSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNG-RSFCAGGDVVTLYRLLSKGRVEECK 91 (380)
Q Consensus 15 ~~~~~~--~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~~~ 91 (380)
+++..+ ++..+.++ |+. |..|.++..+|..-++.+..+..+++..+|+.. +.|++|.|..+.... ......
T Consensus 58 L~~~~Dy~~~~~~dmv-iea-v~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg----~h~fsp 131 (380)
T KOG1683|consen 58 LVETLDYTGFANADMV-IEA-VFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVG----MHFFSP 131 (380)
T ss_pred ccccccccccccccee-ccc-hhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhcc----ccccCH
Confidence 344444 67778887 664 999999999999999999999889999999987 999999999998754 233445
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEcchhcchH--hHHhhhCCeeEee--cCeeEecccccccccCCCchhHHHhhcCchH
Q 016955 92 ECFRTFYSLMYRLNTYLKPHVAIMNGITMGGG--AGLSVHGSFCIAT--EKTVFAIPEVLIGSHPDAGASYYLSHLPGHL 167 (380)
Q Consensus 92 ~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG--~~lal~~D~ria~--~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~ 167 (380)
..+-++.++++....++.|+.+++||.+--|| +-+.-||+|++.- ..-..+..+...++..+..-.-.+....|..
T Consensus 132 a~~m~LlEii~~~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~ 211 (380)
T KOG1683|consen 132 AHWMQLLEIILALYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFR 211 (380)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCcc
Confidence 56667888999999999999999999998888 8889999999997 4555577888888544433444455556777
Q ss_pred -HHHHhhcCCCcCHHHHHHcCCcccccCC
Q 016955 168 -GEYLGLTGGRLSGEELLACGFATHYIPS 195 (380)
Q Consensus 168 -a~~l~ltG~~i~a~eA~~~GLv~~vv~~ 195 (380)
+-+-+--|.-++..+|++-|+++.+.+.
T Consensus 212 ~g~~~L~d~~gfdv~eal~~gl~~~~~~r 240 (380)
T KOG1683|consen 212 VGERALADGVGFDVAEALAVGLGDEIGPR 240 (380)
T ss_pred ccHHHHhhccCccHHHHHhhccchhccch
Confidence 6677778889999999999999999886
No 110
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=98.46 E-value=1.5e-06 Score=76.81 Aligned_cols=132 Identities=19% Similarity=0.114 Sum_probs=94.1
Q ss_pred CCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 016955 36 LLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLMYRLNTYLKPHVAIM 115 (380)
Q Consensus 36 l~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIaav 115 (380)
++..+..++...|..+..++..+.|+|.=. |.|+|+..-. .++..|...+.|+++.+
T Consensus 18 I~~~~~~~i~~~l~~~~~~~~~~~i~l~in----SpGG~v~~~~-------------------~i~~~l~~~~~~v~t~~ 74 (171)
T cd07017 18 IDDEVANLIIAQLLYLESEDPKKPIYLYIN----SPGGSVTAGL-------------------AIYDTMQYIKPPVSTIC 74 (171)
T ss_pred EcHHHHHHHHHHHHHHHccCCCCceEEEEE----CCCCCHHHHH-------------------HHHHHHHhcCCCEEEEE
Confidence 678899999999999998766556655443 5555553321 23344556789999999
Q ss_pred cchhcchHhHHhhhCC--eeEeecCeeEecccccccccCCCchhHH-----------------HhhcCch--H-HHHHhh
Q 016955 116 NGITMGGGAGLSVHGS--FCIATEKTVFAIPEVLIGSHPDAGASYY-----------------LSHLPGH--L-GEYLGL 173 (380)
Q Consensus 116 ~G~a~GgG~~lal~~D--~ria~~~a~f~~pe~~~G~~p~~g~~~~-----------------L~r~~g~--~-a~~l~l 173 (380)
.|.|.++|..+++++| .|++.+++.|.+.+...|..-. .... +...-|. . ...++-
T Consensus 75 ~g~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~--~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~ 152 (171)
T cd07017 75 LGLAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQ--ASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTD 152 (171)
T ss_pred EeEehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhh
Confidence 9999999999999999 7999999999997765543322 1111 1111122 2 345556
Q ss_pred cCCCcCHHHHHHcCCcccc
Q 016955 174 TGGRLSGEELLACGFATHY 192 (380)
Q Consensus 174 tG~~i~a~eA~~~GLv~~v 192 (380)
.+.-++|+||+++||||+|
T Consensus 153 ~~~~lta~EA~e~GiiD~V 171 (171)
T cd07017 153 RDRYMSAEEAKEYGLIDKI 171 (171)
T ss_pred CCccccHHHHHHcCCCccC
Confidence 7788999999999999975
No 111
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=98.45 E-value=3.9e-05 Score=73.61 Aligned_cols=139 Identities=13% Similarity=0.094 Sum_probs=95.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 016955 33 LNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLMYRLNTYLKPHV 112 (380)
Q Consensus 33 ~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvI 112 (380)
.-.++++-.....+.++.++.. .+-+|-|.-++++++ |.+-.+ ......+...+..+....+|+|
T Consensus 132 ~G~~~p~g~rKa~Rlm~lA~~f-~lPIItlvDTpGA~~-G~~AE~-------------~G~~~aiar~l~~~a~~~VP~I 196 (322)
T CHL00198 132 FGMPSPGGYRKALRLMKHANKF-GLPILTFIDTPGAWA-GVKAEK-------------LGQGEAIAVNLREMFSFEVPII 196 (322)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcCc-CHHHHH-------------HhHHHHHHHHHHHHHcCCCCEE
Confidence 4568899999999999998775 466666655555554 321111 1122344455666788999999
Q ss_pred EEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchHHHHHhhcCCCcCHHHHHHcCCcccc
Q 016955 113 AIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHLGEYLGLTGGRLSGEELLACGFATHY 192 (380)
Q Consensus 113 aav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~a~~l~ltG~~i~a~eA~~~GLv~~v 192 (380)
++|-|.|.|||+.....||++++.+++.++. +.|. |++..|-+-.... .+ +.....++|+++++.|+||+|
T Consensus 197 sVViGeggsGGAlal~~aD~V~m~e~a~~sV------isPE-g~a~Il~~d~~~a-~~-aA~~~~ita~dL~~~giiD~i 267 (322)
T CHL00198 197 CTIIGEGGSGGALGIGIGDSIMMLEYAVYTV------ATPE-ACAAILWKDSKKS-LD-AAEALKITSEDLKVLGIIDEI 267 (322)
T ss_pred EEEeCcccHHHHHhhhcCCeEEEeCCeEEEe------cCHH-HHHHHHhcchhhH-HH-HHHHcCCCHHHHHhCCCCeEe
Confidence 9999999888876566699999999998765 3343 4444444432221 11 223457899999999999999
Q ss_pred cCC
Q 016955 193 IPS 195 (380)
Q Consensus 193 v~~ 195 (380)
+|.
T Consensus 268 i~E 270 (322)
T CHL00198 268 IPE 270 (322)
T ss_pred ccC
Confidence 974
No 112
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=98.44 E-value=3.9e-05 Score=75.54 Aligned_cols=136 Identities=15% Similarity=0.107 Sum_probs=92.8
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 016955 34 NALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLMYRLNTYLKPHVA 113 (380)
Q Consensus 34 Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIa 113 (380)
.+++++-.....+.++.++.. ++-+|-|.-++++++ |.+..+ ......+...+..+....+|+|+
T Consensus 200 G~~~peGyRKAlR~mklAekf-~lPIVtLVDTpGA~p-G~~AEe-------------~Gqa~aIAr~l~ams~l~VPiIS 264 (431)
T PLN03230 200 AMPQPNGYRKALRFMRHAEKF-GFPILTFVDTPGAYA-GIKAEE-------------LGQGEAIAFNLREMFGLRVPIIA 264 (431)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcCC-CHHHHH-------------HhHHHHHHHHHHHHhcCCCCEEE
Confidence 468899999999999998775 466666655544442 222111 12234455667778899999999
Q ss_pred EEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCch--HHHHHhhcCCCcCHHHHHHcCCccc
Q 016955 114 IMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGH--LGEYLGLTGGRLSGEELLACGFATH 191 (380)
Q Consensus 114 av~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~--~a~~l~ltG~~i~a~eA~~~GLv~~ 191 (380)
+|-|.+.|||+....+||++++.+++.++. +.|.+ ++..|-+-... .+.+ ...++|+++++.|+||+
T Consensus 265 VViGeGgSGGAlalg~aD~VlMle~A~ysV------isPEg-aAsILwkd~~~A~eAAe----alkitA~dL~~~GiID~ 333 (431)
T PLN03230 265 TVIGEGGSGGALAIGCGNRMLMMENAVYYV------ASPEA-CAAILWKSAAAAPKAAE----ALRITAAELVKLGVVDE 333 (431)
T ss_pred EEeCCCCcHHHHHhhcCCEEEEecCCEEEe------cCHHH-HHHHHhccccchHHHHH----HcCCCHHHHHhCCCCeE
Confidence 999999666665555789999999887655 23443 44444332221 1333 33899999999999999
Q ss_pred ccCC
Q 016955 192 YIPS 195 (380)
Q Consensus 192 vv~~ 195 (380)
|++.
T Consensus 334 II~E 337 (431)
T PLN03230 334 IVPE 337 (431)
T ss_pred eccC
Confidence 9974
No 113
>PRK10949 protease 4; Provisional
Probab=98.43 E-value=3.4e-06 Score=88.37 Aligned_cols=156 Identities=19% Similarity=0.183 Sum_probs=100.9
Q ss_pred cCcEEEEEEcCC-----CCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHH
Q 016955 19 GASSRTIILNRP-----NVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKEC 93 (380)
Q Consensus 19 ~~~v~~i~lnrp-----~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~ 93 (380)
.+.|++|.++.. ...+.++. +.+.+.|+.+..|++|++|||+-. |.|+..... .
T Consensus 325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrIn----SpGGs~~as------------e-- 383 (618)
T PRK10949 325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVN----SPGGSVTAS------------E-- 383 (618)
T ss_pred CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEec----CCCCcHHHH------------H--
Confidence 567888888642 12233443 567888999999999999999886 444433221 1
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccc------------cccccCCCchh----
Q 016955 94 FRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEV------------LIGSHPDAGAS---- 157 (380)
Q Consensus 94 ~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~------------~~G~~p~~g~~---- 157 (380)
.+.+.+..+....||||+.+.|.|..||.-++++||.++|.+.+..+.--+ ++|+-+++..+
T Consensus 384 --~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~ 461 (618)
T PRK10949 384 --VIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLA 461 (618)
T ss_pred --HHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccC
Confidence 122233445567899999999999999999999999999999765444221 23332211100
Q ss_pred -------------HHHh-----------------hcCchHHHHHhhcCCCcCHHHHHHcCCcccccCCCC
Q 016955 158 -------------YYLS-----------------HLPGHLGEYLGLTGGRLSGEELLACGFATHYIPSAR 197 (380)
Q Consensus 158 -------------~~L~-----------------r~~g~~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~ 197 (380)
..+. |-+.....+-+..|+.+++++|++.||||++-.-++
T Consensus 462 ~~~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v~~ia~Grv~tg~~A~~~GLVD~lG~~~~ 531 (618)
T PRK10949 462 DVSITKALPPEFQQMMQLSIENGYKRFITLVADSRHKTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDD 531 (618)
T ss_pred CccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHhcCCcccHHHHHHcCCCccCCCHHH
Confidence 0011 111111223357899999999999999999865443
No 114
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=98.41 E-value=2.1e-06 Score=76.49 Aligned_cols=144 Identities=23% Similarity=0.209 Sum_probs=94.0
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHHHHHH
Q 016955 24 TIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLMYR 103 (380)
Q Consensus 24 ~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 103 (380)
+|.|+.| +|.++...+...|..++.++..+-|.|.=. |.|+|+..- ..++..
T Consensus 18 ~i~l~g~-----I~~~~~~~~~~~L~~l~~~~~~~~i~i~IN----SpGG~v~~g-------------------~~i~~~ 69 (182)
T PF00574_consen 18 IIFLNGP-----IDEESANRLISQLLYLENEDKNKPINIYIN----SPGGDVDAG-------------------LAIYDA 69 (182)
T ss_dssp EEEEESS-----BSHHHHHHHHHHHHHHHHHTSSSEEEEEEE----ECEBCHHHH-------------------HHHHHH
T ss_pred EEEECCc-----cCHHHHHHHHHHHHHHhccCCCceEEEEEc----CCCCccHHH-------------------HHHHHH
Confidence 3555554 789999999999888854433332222211 566665432 234556
Q ss_pred HhcCCCcEEEEEcchhcchHhHHhhhCCe--eEeecCeeEecccccccccCCCchhH----HH-----------hhcCch
Q 016955 104 LNTYLKPHVAIMNGITMGGGAGLSVHGSF--CIATEKTVFAIPEVLIGSHPDAGASY----YL-----------SHLPGH 166 (380)
Q Consensus 104 l~~~~kPvIaav~G~a~GgG~~lal~~D~--ria~~~a~f~~pe~~~G~~p~~g~~~----~L-----------~r~~g~ 166 (380)
|..++.|+++.+.|.|.+.|.-++++|+. |++.+++.|.+.+...+......-.. .+ ....|.
T Consensus 70 i~~~~~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~ 149 (182)
T PF00574_consen 70 IRSSKAPVTTVVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGL 149 (182)
T ss_dssp HHHSSSEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHhcCCCeEEEEeCccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 77889999999999999999999999999 89999999999888655433111100 00 011122
Q ss_pred --H-HHHHhhcCCCcCHHHHHHcCCcccccCC
Q 016955 167 --L-GEYLGLTGGRLSGEELLACGFATHYIPS 195 (380)
Q Consensus 167 --~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~ 195 (380)
. ...++-...-++|+||+++||||+|+.+
T Consensus 150 ~~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~~ 181 (182)
T PF00574_consen 150 SKEEIEELMDRDTWLSAEEALEYGIIDEIIES 181 (182)
T ss_dssp -HHHHHHHCSSTEEEEHHHHHHHTSSSEEESS
T ss_pred cHHHHHHHHhCCccccHHHHHHcCCCCEeccC
Confidence 1 2344455556899999999999999864
No 115
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=98.38 E-value=6.2e-05 Score=72.21 Aligned_cols=137 Identities=12% Similarity=0.089 Sum_probs=93.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 016955 33 LNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLMYRLNTYLKPHV 112 (380)
Q Consensus 33 ~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvI 112 (380)
.-+++++-.....+.++.++.- ++-+|-|.-++++++ |.+... ....+.+...+..+....+|+|
T Consensus 129 ~G~~~p~g~rKa~R~m~lA~~f-~iPvVtlvDTpGa~~-g~~aE~-------------~G~~~aia~~l~a~s~~~VP~I 193 (316)
T TIGR00513 129 FGMPAPEGYRKALRLMKMAERF-KMPIITFIDTPGAYP-GIGAEE-------------RGQSEAIARNLREMARLGVPVI 193 (316)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCCCC-CHHHHH-------------HHHHHHHHHHHHHHHcCCCCEE
Confidence 3668899999999999888764 466676666555444 222111 1223445566777889999999
Q ss_pred EEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCch--HHHHHhhcCCCcCHHHHHHcCCcc
Q 016955 113 AIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGH--LGEYLGLTGGRLSGEELLACGFAT 190 (380)
Q Consensus 113 aav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~--~a~~l~ltG~~i~a~eA~~~GLv~ 190 (380)
++|-|.|.|||..-...||++++.+++.++. +++-|++..|-+-... .+.+ -..+++.++.+.|+||
T Consensus 194 sVViGeggsGGAla~~~aD~v~m~~~a~~sV-------isPEg~a~Il~kd~~~a~~aae----~~~~ta~~l~~~G~iD 262 (316)
T TIGR00513 194 CTVIGEGGSGGALAIGVGDKVNMLEYSTYSV-------ISPEGCAAILWKDASKAPKAAE----AMKITAPDLKELGLID 262 (316)
T ss_pred EEEecccccHHHhhhccCCEEEEecCceEEe-------cCHHHHHHHhccchhhHHHHHH----HccCCHHHHHHCCCCe
Confidence 9999999777775555699999999887665 4444444444433221 1222 2566899999999999
Q ss_pred cccCC
Q 016955 191 HYIPS 195 (380)
Q Consensus 191 ~vv~~ 195 (380)
.|+|.
T Consensus 263 ~II~e 267 (316)
T TIGR00513 263 SIIPE 267 (316)
T ss_pred EeccC
Confidence 99974
No 116
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=98.36 E-value=6.2e-05 Score=72.32 Aligned_cols=139 Identities=12% Similarity=0.090 Sum_probs=96.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 016955 33 LNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLMYRLNTYLKPHV 112 (380)
Q Consensus 33 ~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvI 112 (380)
.-+++++-.....+.++.++.- ++-+|-|.-++++++ |.+-. .....+.+..++..+....+|+|
T Consensus 129 ~G~~~peg~rKa~R~m~lA~~f-~lPIVtlvDTpGa~~-G~~aE-------------~~G~~~aia~~l~~~a~~~VP~I 193 (319)
T PRK05724 129 FGMPRPEGYRKALRLMKMAEKF-GLPIITFIDTPGAYP-GIGAE-------------ERGQSEAIARNLREMARLKVPII 193 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCCCC-CHHHH-------------hccHHHHHHHHHHHHhCCCCCEE
Confidence 4568899999999999888764 567777766555544 32221 11123445567777889999999
Q ss_pred EEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchHHHHHhhcCCCcCHHHHHHcCCcccc
Q 016955 113 AIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHLGEYLGLTGGRLSGEELLACGFATHY 192 (380)
Q Consensus 113 aav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~a~~l~ltG~~i~a~eA~~~GLv~~v 192 (380)
++|-|.|.|||+.....||++++.+++.++. +++-|++..|-+-... +....- ...+++.++.+.|+||+|
T Consensus 194 sVIiGeg~sGGAla~~~aD~v~m~~~A~~sv-------isPEg~a~Il~~~~~~-a~~aae-~~~ita~~l~~~g~iD~I 264 (319)
T PRK05724 194 CTVIGEGGSGGALAIGVGDRVLMLEYSTYSV-------ISPEGCASILWKDASK-APEAAE-AMKITAQDLKELGIIDEI 264 (319)
T ss_pred EEEeCCccHHHHHHHhccCeeeeecCceEee-------cCHHHHHHHHhcCchh-HHHHHH-HcCCCHHHHHHCCCceEe
Confidence 9999999877775555699999998887654 4444555555443322 222221 456899999999999999
Q ss_pred cCC
Q 016955 193 IPS 195 (380)
Q Consensus 193 v~~ 195 (380)
++.
T Consensus 265 I~E 267 (319)
T PRK05724 265 IPE 267 (319)
T ss_pred ccC
Confidence 974
No 117
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.35 E-value=5.6e-06 Score=74.75 Aligned_cols=137 Identities=10% Similarity=0.032 Sum_probs=90.7
Q ss_pred CCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 016955 36 LLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLMYRLNTYLKPHVAIM 115 (380)
Q Consensus 36 l~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIaav 115 (380)
++..+...+...|..++..+..+.|+|.=. |.|+++..- ..++..|...+.||++.+
T Consensus 32 I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN----SpGG~v~ag-------------------~aI~d~i~~~~~~V~t~v 88 (197)
T PRK14512 32 INKDLSELFQEKILLLEALDSKKPIFVYID----SEGGDIDAG-------------------FAIFNMIRFVKPKVFTIG 88 (197)
T ss_pred EcHHHHHHHHHHHHHHHhcCCCCCEEEEEE----CCCCCHHHH-------------------HHHHHHHHhCCCCEEEEE
Confidence 778899999999988877333344444433 555555331 124455667889999999
Q ss_pred cchhcchHhHHhhhCCe--eEeecCeeEecccccccccCCCchhH----H-----------HhhcCchH---HHHHhhcC
Q 016955 116 NGITMGGGAGLSVHGSF--CIATEKTVFAIPEVLIGSHPDAGASY----Y-----------LSHLPGHL---GEYLGLTG 175 (380)
Q Consensus 116 ~G~a~GgG~~lal~~D~--ria~~~a~f~~pe~~~G~~p~~g~~~----~-----------L~r~~g~~---a~~l~ltG 175 (380)
.|.|.+.|..++++||. |++.+++.|.+....-|+.....-.. . ++..-|.. ...++-..
T Consensus 89 ~G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~~~d 168 (197)
T PRK14512 89 VGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDTDRD 168 (197)
T ss_pred EeeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhhcC
Confidence 99999999999999985 89999998876544322211110000 0 11112221 34444555
Q ss_pred CCcCHHHHHHcCCcccccCC
Q 016955 176 GRLSGEELLACGFATHYIPS 195 (380)
Q Consensus 176 ~~i~a~eA~~~GLv~~vv~~ 195 (380)
.-++|+||+++||||+|++.
T Consensus 169 ~~lta~EA~~yGliD~I~~~ 188 (197)
T PRK14512 169 FWLDSSSAVKYGLVFEVVET 188 (197)
T ss_pred cccCHHHHHHcCCccEeecC
Confidence 67999999999999999975
No 118
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=98.34 E-value=9.4e-06 Score=73.37 Aligned_cols=137 Identities=12% Similarity=-0.004 Sum_probs=94.8
Q ss_pred CCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 016955 36 LLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLMYRLNTYLKPHVAIM 115 (380)
Q Consensus 36 l~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIaav 115 (380)
+|.++..++...|-.++.++..+-|.+.=. |.|+++..- ..++..+...+.||...+
T Consensus 39 i~~~~a~~ii~~ll~L~~~~~~~~I~l~IN----SpGG~v~~g-------------------~aIyd~m~~~~~~V~Tv~ 95 (200)
T CHL00028 39 VDDEIANQLIGLMVYLSIEDDTKDLYLFIN----SPGGSVISG-------------------LAIYDTMQFVKPDVHTIC 95 (200)
T ss_pred ecHHHHHHHHHHHHHHhccCCCCCEEEEEe----CCCcchhhH-------------------HHHHHHHHhcCCCEEEEE
Confidence 899999999999999886543344444332 455554321 224556678889999999
Q ss_pred cchhcchHhHHhhhCC--eeEeecCeeEecccccccccCCCchhH-----------------HHhhcCchH---HHHHhh
Q 016955 116 NGITMGGGAGLSVHGS--FCIATEKTVFAIPEVLIGSHPDAGASY-----------------YLSHLPGHL---GEYLGL 173 (380)
Q Consensus 116 ~G~a~GgG~~lal~~D--~ria~~~a~f~~pe~~~G~~p~~g~~~-----------------~L~r~~g~~---a~~l~l 173 (380)
.|.|.+.|.-|++++| .|++.++++|.+.....|+.-+ -+.- .+...-|.. ..+++-
T Consensus 96 ~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G-~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~~~~ 174 (200)
T CHL00028 96 LGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEG-QASEFVLEAEELLKLRETITRVYAQRTGKPLWVISEDME 174 (200)
T ss_pred EEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhh
Confidence 9999999999999998 6999999999987765553211 1111 111111221 344555
Q ss_pred cCCCcCHHHHHHcCCcccccCCC
Q 016955 174 TGGRLSGEELLACGFATHYIPSA 196 (380)
Q Consensus 174 tG~~i~a~eA~~~GLv~~vv~~~ 196 (380)
...-++|+||+++||||+|+.+.
T Consensus 175 r~~~lta~EA~eyGliD~I~~~~ 197 (200)
T CHL00028 175 RDVFMSATEAKAYGIVDLVAVNN 197 (200)
T ss_pred cCccCCHHHHHHcCCCcEEeecC
Confidence 56669999999999999999764
No 119
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=98.32 E-value=8e-05 Score=77.74 Aligned_cols=139 Identities=13% Similarity=0.031 Sum_probs=96.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 016955 33 LNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLMYRLNTYLKPHV 112 (380)
Q Consensus 33 ~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvI 112 (380)
.-+++++-+....+.++.++.. .+-+|-|.-++++++ |..... ......+...+..+....+|+|
T Consensus 220 fG~~~peGyRKAlRlmkLAekf-gLPIVtLVDTpGA~p-G~~AEe-------------~Gq~~aIArnl~amasl~VP~I 284 (762)
T PLN03229 220 FGMPTPHGYRKALRMMYYADHH-GFPIVTFIDTPGAYA-DLKSEE-------------LGQGEAIAHNLRTMFGLKVPIV 284 (762)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCcCC-CchhHH-------------HhHHHHHHHHHHHHhCCCCCEE
Confidence 4568888899999999888764 466666655545544 222211 1223445566777889999999
Q ss_pred EEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchHHHHHhhcCCCcCHHHHHHcCCcccc
Q 016955 113 AIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHLGEYLGLTGGRLSGEELLACGFATHY 192 (380)
Q Consensus 113 aav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~a~~l~ltG~~i~a~eA~~~GLv~~v 192 (380)
++|-|.|.|||+.....||++++.+++.++. .++-|++..|-+-.... . -+.....++|++++++|+||+|
T Consensus 285 SVViGeggSGGAlA~g~aD~VlMle~A~~sV-------isPEgaAsILwkd~~~A-~-eAAe~lkiTa~dL~~lGiiD~I 355 (762)
T PLN03229 285 SIVIGEGGSGGALAIGCANKLLMLENAVFYV-------ASPEACAAILWKSAKAA-P-KAAEKLRITAQELCRLQIADGI 355 (762)
T ss_pred EEEeCCcchHHHHHhhcCCEEEEecCCeEEe-------cCHHHHHHHHhcCcccH-H-HHHHHcCCCHHHHHhCCCCeee
Confidence 9999999888887777899999999887554 44444444444432222 1 1234457899999999999999
Q ss_pred cCC
Q 016955 193 IPS 195 (380)
Q Consensus 193 v~~ 195 (380)
+|.
T Consensus 356 IpE 358 (762)
T PLN03229 356 IPE 358 (762)
T ss_pred ccC
Confidence 984
No 120
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=98.25 E-value=2.2e-05 Score=70.58 Aligned_cols=136 Identities=15% Similarity=0.063 Sum_probs=90.6
Q ss_pred CCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 016955 36 LLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLMYRLNTYLKPHVAIM 115 (380)
Q Consensus 36 l~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIaav 115 (380)
++..+...+...|..++.++..+-|++.=. |.|+|+..-. .++..+...+.||...+
T Consensus 35 I~~~~~~~ii~~L~~l~~~~~~~~i~l~In----SpGG~v~~g~-------------------~I~d~l~~~~~~v~t~~ 91 (191)
T TIGR00493 35 VNDSVANLIVAQLLFLEAEDPEKDIYLYIN----SPGGSITAGL-------------------AIYDTMQFIKPDVSTIC 91 (191)
T ss_pred EChHHHHHHHHHHHHhhccCCCCCEEEEEE----CCCCCHHHHH-------------------HHHHHHHhcCCCEEEEE
Confidence 778888899999988887654444554433 4566653211 23344556667788888
Q ss_pred cchhcchHhHHhhhCC--eeEeecCeeEecccccccccCCCchh---------------HHHhhcCch--H-HHHHhhcC
Q 016955 116 NGITMGGGAGLSVHGS--FCIATEKTVFAIPEVLIGSHPDAGAS---------------YYLSHLPGH--L-GEYLGLTG 175 (380)
Q Consensus 116 ~G~a~GgG~~lal~~D--~ria~~~a~f~~pe~~~G~~p~~g~~---------------~~L~r~~g~--~-a~~l~ltG 175 (380)
.|.|.+.|.-+++++| .|++.+++.|.+.+...|......-. ..+.+.-|. . ...++-.+
T Consensus 92 ~G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~~ 171 (191)
T TIGR00493 92 IGQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTERD 171 (191)
T ss_pred EEeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCC
Confidence 8999999998888766 69999999999966543332111111 112222233 2 45566677
Q ss_pred CCcCHHHHHHcCCcccccC
Q 016955 176 GRLSGEELLACGFATHYIP 194 (380)
Q Consensus 176 ~~i~a~eA~~~GLv~~vv~ 194 (380)
.-++|+||+++||||+++.
T Consensus 172 ~~lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 172 FFMSAEEAKEYGLIDSVLT 190 (191)
T ss_pred ccCcHHHHHHcCCccEEec
Confidence 7899999999999999874
No 121
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=98.11 E-value=0.00018 Score=67.94 Aligned_cols=157 Identities=11% Similarity=0.074 Sum_probs=98.9
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcC----CceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHH
Q 016955 22 SRTIILNRPNVLNALLTPMGVRMTKLYESWEKDS----RVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTF 97 (380)
Q Consensus 22 v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~----~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~ 97 (380)
|+++-.+..=..-++....-..+..+++.+..|. .+-+|.|.-+ +|..+.+-. .....+.+ .
T Consensus 61 v~v~a~D~t~~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dS-----gGaRlqEg~--------~~L~~~a~-i 126 (274)
T TIGR03133 61 VVVAAQEGRFQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDT-----GGVRLQEAN--------AGLIAIAE-I 126 (274)
T ss_pred EEEEEECCCccCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcC-----CCcChhhhH--------HHHHHHHH-H
Confidence 3344444333567788888899999999987621 2346666553 344443211 01111212 1
Q ss_pred HHHHHHHhcCCCcEEEEEcch--hcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCch--H-HHHHh
Q 016955 98 YSLMYRLNTYLKPHVAIMNGI--TMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGH--L-GEYLG 172 (380)
Q Consensus 98 ~~l~~~l~~~~kPvIaav~G~--a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~--~-a~~l~ 172 (380)
...+..+... .|+|+++-|+ |.||+..++.+||++|+++++.+++. +........|. . ..+-.
T Consensus 127 ~~~~~~ls~~-vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~a-----------GP~VIe~~~G~e~~~~~d~~ 194 (274)
T TIGR03133 127 MRAILDARAA-VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLS-----------GPEVIEQEAGVEEFDSRDRA 194 (274)
T ss_pred HHHHHHHhCC-CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEecc-----------CHHHHHHhcCCCccCHHHhc
Confidence 2223334444 9999999999 89999999999999999998877762 23333333342 1 34444
Q ss_pred hcCCCcCHHHHHHcCCcccccCCCChhHHHHHH
Q 016955 173 LTGGRLSGEELLACGFATHYIPSARLPLIEEQL 205 (380)
Q Consensus 173 ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l 205 (380)
|.-+.+.+......|++|.+++++. +.+.+++
T Consensus 195 l~~~~lGG~~~~~sG~~D~~v~dd~-~a~~~~~ 226 (274)
T TIGR03133 195 LVWRTTGGKHRFLSGDADVLVEDDV-DAFRAAV 226 (274)
T ss_pred ccccccchHhHhhcccceEEeCCHH-HHHHHHH
Confidence 5555667777888999999998864 4466655
No 122
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.11 E-value=4.8e-05 Score=69.63 Aligned_cols=138 Identities=13% Similarity=0.022 Sum_probs=89.0
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Q 016955 35 ALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLMYRLNTYLKPHVAI 114 (380)
Q Consensus 35 al~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIaa 114 (380)
.+|..+...+...|..++..+.-+-|.+.=. |.|+++..- ..++..+...+-||...
T Consensus 62 ~Idd~~a~~i~aqLl~L~~~~~~~~I~lyIN----SpGGsv~aG-------------------laIyd~m~~~~~~V~tv 118 (221)
T PRK14514 62 QIDDYTANTIQAQLLYLDSVDPGKDISIYIN----SPGGSVYAG-------------------LGIYDTMQFISSDVATI 118 (221)
T ss_pred EEcHHHHHHHHHHHHHHhccCCCCCEEEEEE----CCCcchhhH-------------------HHHHHHHHhcCCCEEEE
Confidence 3788888888888777765322222222222 344443221 12445566788899999
Q ss_pred EcchhcchHhHHhhhCCe--eEeecCeeEecccccccccCCCchh----HH-----------HhhcCchH---HHHHhhc
Q 016955 115 MNGITMGGGAGLSVHGSF--CIATEKTVFAIPEVLIGSHPDAGAS----YY-----------LSHLPGHL---GEYLGLT 174 (380)
Q Consensus 115 v~G~a~GgG~~lal~~D~--ria~~~a~f~~pe~~~G~~p~~g~~----~~-----------L~r~~g~~---a~~l~lt 174 (380)
+.|.|.+.|..|++++|. |++.+++.|.+.....|......-. .- ++..-|.. ...++-.
T Consensus 119 ~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~~~r 198 (221)
T PRK14514 119 CTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWADSDR 198 (221)
T ss_pred EEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhc
Confidence 999999999999999996 8999999988866654432111100 00 11112321 3445555
Q ss_pred CCCcCHHHHHHcCCcccccCC
Q 016955 175 GGRLSGEELLACGFATHYIPS 195 (380)
Q Consensus 175 G~~i~a~eA~~~GLv~~vv~~ 195 (380)
..-++|+||+++||||+|+..
T Consensus 199 d~wmtA~EA~eyGliD~Vi~~ 219 (221)
T PRK14514 199 DYWMTAQEAKEYGMIDEVLIK 219 (221)
T ss_pred CccCCHHHHHHcCCccEEeec
Confidence 667999999999999999864
No 123
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.09 E-value=2.9e-05 Score=75.28 Aligned_cols=134 Identities=22% Similarity=0.247 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchh
Q 016955 40 MGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLMYRLNTYLKPHVAIMNGIT 119 (380)
Q Consensus 40 ~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIaav~G~a 119 (380)
-.+.+.+.|+.+..|+++++|+|.=. |-|+....-. .+++.++++..-. ||++.|++.|
T Consensus 81 ~~~~~~~~l~~~~~~~~vk~vvL~in----SPGG~v~as~----------------~i~~~l~~l~~~~-PV~v~v~~~A 139 (317)
T COG0616 81 GGDDIEEILRAARADPSVKAVVLRIN----SPGGSVVASE----------------LIARALKRLRAKK-PVVVSVGGYA 139 (317)
T ss_pred cHHHHHHHHHHHhcCCCCceEEEEEE----CcCCchhHHH----------------HHHHHHHHHhhcC-CEEEEECCee
Confidence 35667777888889999999999765 5555543211 1223334444444 9999999999
Q ss_pred cchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhc------------------------------------
Q 016955 120 MGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHL------------------------------------ 163 (380)
Q Consensus 120 ~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~------------------------------------ 163 (380)
..||.-++++||.++|++.+..|---+..+ .|.. ...+.++
T Consensus 140 ASGGY~IA~aAd~I~a~p~si~GSIGVi~~-~~~~--~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~~~~q~~~~e 216 (317)
T COG0616 140 ASGGYYIALAADKIVADPSSITGSIGVISG-APNF--EELLEKLGVEKEVITAGEYKDILSPFRPLTEEEREILQKEIDE 216 (317)
T ss_pred cchhhhhhccCCEEEecCCceeeeceeEEe-cCCH--HHHHHhcCCceeeeeccccccccCcccCCCHHHHHHHHHHHHH
Confidence 999999999999999999988776544444 2211 1111110
Q ss_pred ------------Cc-hH-HHHHhhcCCCcCHHHHHHcCCcccccCCCC
Q 016955 164 ------------PG-HL-GEYLGLTGGRLSGEELLACGFATHYIPSAR 197 (380)
Q Consensus 164 ------------~g-~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~ 197 (380)
-+ .. ...-+.+|+-+++++|++.||||++...++
T Consensus 217 ~y~~F~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~~~ 264 (317)
T COG0616 217 TYDEFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGLDD 264 (317)
T ss_pred HHHHHHHHHHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCCHHH
Confidence 01 11 334678999999999999999999875443
No 124
>PRK11778 putative inner membrane peptidase; Provisional
Probab=98.08 E-value=4.2e-05 Score=73.98 Aligned_cols=155 Identities=14% Similarity=0.077 Sum_probs=94.3
Q ss_pred cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHH
Q 016955 19 GASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFY 98 (380)
Q Consensus 19 ~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~ 98 (380)
.+.|++|.++.+=..+ ....+-+++...++.+..+ .+|||+-. |.|+.+...... .
T Consensus 89 ~~~v~VI~~~G~I~~~-~~~~l~e~i~a~l~~A~~~---~aVvLrid----SpGG~v~~s~~a---------~------- 144 (330)
T PRK11778 89 KPRLFVLDFKGDIDAS-EVESLREEITAILAVAKPG---DEVLLRLE----SPGGVVHGYGLA---------A------- 144 (330)
T ss_pred CCeEEEEEEEEEECCC-cchhhHHHHHHHHHhccCC---CeEEEEEe----CCCCchhHHHHH---------H-------
Confidence 4678889888542111 1123345555555544432 47888765 444444321100 0
Q ss_pred HHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchh---------------------
Q 016955 99 SLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGAS--------------------- 157 (380)
Q Consensus 99 ~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~--------------------- 157 (380)
..+.++....||+++.+++.|..||+.++++||.++|.+.+.++...+... .|.....
T Consensus 145 ~~l~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~-~~~~~~lLeKlGI~~evi~aG~yK~a~~ 223 (330)
T PRK11778 145 SQLQRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQ-IPNFHRLLKKHDIDVELHTAGEYKRTLT 223 (330)
T ss_pred HHHHHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeee-ccCHHHHHHHCCCceEEEEecCccCCCC
Confidence 012345567899999999999999999999999999999888766433211 2211110
Q ss_pred ----------HHHhhc---------------CchHHHHHhhcCCCcCHHHHHHcCCcccccCCCCh
Q 016955 158 ----------YYLSHL---------------PGHLGEYLGLTGGRLSGEELLACGFATHYIPSARL 198 (380)
Q Consensus 158 ----------~~L~r~---------------~g~~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l 198 (380)
..+... -+.....-+.+|+.++|++|++.||||++...+++
T Consensus 224 pf~~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~dd~ 289 (330)
T PRK11778 224 LFGENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTSDDY 289 (330)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCHHHH
Confidence 000000 11112233568999999999999999999876655
No 125
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.03 E-value=8.7e-05 Score=67.05 Aligned_cols=139 Identities=17% Similarity=0.114 Sum_probs=93.4
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Q 016955 35 ALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLMYRLNTYLKPHVAI 114 (380)
Q Consensus 35 al~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIaa 114 (380)
.++.++...+...|-.++.++.-+-|.+.=. |.|+|+..- ..++..+...+-||...
T Consensus 35 ~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~IN----SpGG~v~~G-------------------laIyd~m~~~~~~V~Ti 91 (201)
T PRK14513 35 PIESQMANTIVAQLLLLDSQNPEQEIQMYIN----CPGGEVYAG-------------------LAIYDTMRYIKAPVSTI 91 (201)
T ss_pred EEcHHHHHHHHHHHHHhhccCCCCCEEEEEE----CCCCchhhH-------------------HHHHHHHHhcCCCEEEE
Confidence 4888999999888888876433222222222 455554321 23455667788899999
Q ss_pred EcchhcchHhHHhhhCCe--eEeecCeeEecccccccccCCCchhHHH-----------------hhcCchH---HHHHh
Q 016955 115 MNGITMGGGAGLSVHGSF--CIATEKTVFAIPEVLIGSHPDAGASYYL-----------------SHLPGHL---GEYLG 172 (380)
Q Consensus 115 v~G~a~GgG~~lal~~D~--ria~~~a~f~~pe~~~G~~p~~g~~~~L-----------------~r~~g~~---a~~l~ 172 (380)
+.|.|.+.|.-|++++|- |++.+++++-+.....|+. +....+. .+.-|.. -..++
T Consensus 92 ~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~--G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~~~ 169 (201)
T PRK14513 92 CVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFR--GNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLRDM 169 (201)
T ss_pred EEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHh
Confidence 999999999999999995 8999999998877655531 1122211 1112321 23344
Q ss_pred hcCCCcCHHHHHHcCCcccccCCCCh
Q 016955 173 LTGGRLSGEELLACGFATHYIPSARL 198 (380)
Q Consensus 173 ltG~~i~a~eA~~~GLv~~vv~~~~l 198 (380)
-...-++|+||+++||||+|+++.+.
T Consensus 170 ~rd~~msa~EA~eyGliD~I~~~~~~ 195 (201)
T PRK14513 170 ERDYFMSPEEAKAYGLIDSVIEPTRV 195 (201)
T ss_pred ccCcccCHHHHHHcCCCcEEeccCCC
Confidence 45556999999999999999987553
No 126
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.02 E-value=9.7e-05 Score=66.56 Aligned_cols=139 Identities=16% Similarity=0.066 Sum_probs=92.3
Q ss_pred CCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 016955 36 LLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLMYRLNTYLKPHVAIM 115 (380)
Q Consensus 36 l~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIaav 115 (380)
+|.++..++...|..++.++..+-|.+.=. |.|+++..- ..++..+...+-||...+
T Consensus 34 i~~~~a~~ii~~Ll~l~~~~~~~~I~l~IN----SpGG~v~~g-------------------~aIyd~m~~~~~~V~t~~ 90 (196)
T PRK12551 34 VTSDSANRIVAQLLFLEAEDPEKDIYLYIN----SPGGSVYDG-------------------LGIFDTMQHVKPDVHTVC 90 (196)
T ss_pred ecHHHHHHHHHHHHHhhccCCCCCEEEEEe----CCCcchhhH-------------------HHHHHHHHhcCCCEEEEE
Confidence 889999999999999986543344444333 455554321 124455667788999999
Q ss_pred cchhcchHhHHhhhCCe--eEeecCeeEecccccccccCCCchhH----H-----------HhhcCchH---HHHHhhcC
Q 016955 116 NGITMGGGAGLSVHGSF--CIATEKTVFAIPEVLIGSHPDAGASY----Y-----------LSHLPGHL---GEYLGLTG 175 (380)
Q Consensus 116 ~G~a~GgG~~lal~~D~--ria~~~a~f~~pe~~~G~~p~~g~~~----~-----------L~r~~g~~---a~~l~ltG 175 (380)
.|.|.+.|..|++++|. |++.++++|.+.....|..-...-.. . +...-|.. ...++-..
T Consensus 91 ~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~rd 170 (196)
T PRK12551 91 VGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTDRD 170 (196)
T ss_pred EEEehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcC
Confidence 99999999999999885 88899999888665433211110000 0 11112321 23444555
Q ss_pred CCcCHHHHHHcCCcccccCCCC
Q 016955 176 GRLSGEELLACGFATHYIPSAR 197 (380)
Q Consensus 176 ~~i~a~eA~~~GLv~~vv~~~~ 197 (380)
.-++|+||+++||||+|++...
T Consensus 171 ~~msa~EA~eyGliD~I~~~~~ 192 (196)
T PRK12551 171 FFMSPSEAVEYGLIDLVIDKRP 192 (196)
T ss_pred cCCCHHHHHHcCCCcEEeccCC
Confidence 6699999999999999998654
No 127
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=97.88 E-value=0.00029 Score=67.26 Aligned_cols=156 Identities=11% Similarity=0.117 Sum_probs=94.1
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcC----CceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHH
Q 016955 22 SRTIILNRPNVLNALLTPMGVRMTKLYESWEKDS----RVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTF 97 (380)
Q Consensus 22 v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~----~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~ 97 (380)
|+.+-.+..=..-++.......+..+++.+..+. -+-+|+|.-+ +|..+.+-. .....+.+ .
T Consensus 70 v~v~a~D~tf~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dS-----GGaRlqEg~--------~~L~~~a~-i 135 (301)
T PRK07189 70 VVVAAQEGRFMGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFET-----GGVRLQEAN--------AGLAAIAE-I 135 (301)
T ss_pred EEEEEECCCccCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecC-----CCcCccchH--------HHHHHHHH-H
Confidence 3444444444677899999999999999987764 1566666553 333442211 01111111 1
Q ss_pred HHHHHHHhcCCCcEEEEEcch--hcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCch--H-HHHHh
Q 016955 98 YSLMYRLNTYLKPHVAIMNGI--TMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGH--L-GEYLG 172 (380)
Q Consensus 98 ~~l~~~l~~~~kPvIaav~G~--a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~--~-a~~l~ 172 (380)
+..+..++.. +|+|+++.|+ |+||+...+.+||++|+++++.+++. +........|. . ..+..
T Consensus 136 ~~~~~~ls~~-VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~igla-----------GP~VIe~~~G~e~~d~~d~~ 203 (301)
T PRK07189 136 MRAIVDLRAA-VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGLS-----------GPEVIEQEAGVEEFDSRDRA 203 (301)
T ss_pred HHHHHHHhCC-CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEecc-----------CHHHHHHhcCCcccCHHHhc
Confidence 2223334444 9999999999 99999999999999999998887762 22223332231 1 23323
Q ss_pred hcCCCcCHHHHHHcCCcccccCCCChhHHHHH
Q 016955 173 LTGGRLSGEELLACGFATHYIPSARLPLIEEQ 204 (380)
Q Consensus 173 ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~ 204 (380)
+..+.+.+......|.+|.+++++. +.+.++
T Consensus 204 ~vw~~lGG~h~~~sG~~D~~v~dd~-~a~~~~ 234 (301)
T PRK07189 204 LVWRTTGGKHRYLSGLADALVDDDV-AAFRAA 234 (301)
T ss_pred ccccccCcceeeecccceEEeCCHH-HHHHHH
Confidence 3222233334556899999998764 334443
No 128
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=97.83 E-value=0.0012 Score=61.32 Aligned_cols=163 Identities=14% Similarity=0.052 Sum_probs=95.9
Q ss_pred cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHH-HhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHH
Q 016955 19 GASSRTIILNRPNVLNALLTPMGVRMTKLYESW-EKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTF 97 (380)
Q Consensus 19 ~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~-~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~ 97 (380)
.|....|.=|.|.. .++.+-...+...+... +.+.++-+|.|.=+++. -.|.. ++.....+.+
T Consensus 30 ~G~~V~vIa~~~~~--~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtpG~-~~g~~-------------aE~~G~~~a~ 93 (238)
T TIGR03134 30 AGGKVTVIGVVPDA--EVGLDEALALAQAVLDVIEADDKRPIVVLVDTPSQ-AYGRR-------------EELLGINQAL 93 (238)
T ss_pred CCEEEEEEEECCCC--cCChHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC-CCCHH-------------HHHHHHHHHH
Confidence 34444455555542 78888888888888885 45577777777654322 22211 1122222333
Q ss_pred HHHHH---HHhcCCCcEEEEEcchhcchHhHHh-hhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchHHHHHhh
Q 016955 98 YSLMY---RLNTYLKPHVAIMNGITMGGGAGLS-VHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHLGEYLGL 173 (380)
Q Consensus 98 ~~l~~---~l~~~~kPvIaav~G~a~GgG~~la-l~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~a~~l~l 173 (380)
..++. .....+.|+|+.|-|.+.|||+.-. +.+|.++|.+++ .++..+.-+++..+.+-... ..++.-
T Consensus 94 A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~A-------~i~vm~~e~aa~I~~~~~~~-~~e~a~ 165 (238)
T TIGR03134 94 AHLAKALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPGA-------MVHVMDLESMARVTKRSVEE-LEALAK 165 (238)
T ss_pred HHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCCc-------EEEecCHHHHHHHHccCHhH-HHHHHH
Confidence 33334 4445669999999999998775332 236776666554 55666666666555544432 222221
Q ss_pred c--CCCcCHHHHHHcCCcccccCCCChhHHHHHH
Q 016955 174 T--GGRLSGEELLACGFATHYIPSARLPLIEEQL 205 (380)
Q Consensus 174 t--G~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l 205 (380)
+ -...+.+.+.+.|+||.|+++.+-+.+.+.+
T Consensus 166 ~~~~~a~~~~~~~~~G~vd~vi~~~~~~~~~~~~ 199 (238)
T TIGR03134 166 SSPVFAPGIENFVKLGGVHALLDVADADAPAAQL 199 (238)
T ss_pred hhhhhccCHHHHHhCCCccEEeCCCCcccHHHHH
Confidence 1 1245677899999999999976643333444
No 129
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=97.62 E-value=0.0023 Score=60.95 Aligned_cols=148 Identities=15% Similarity=0.166 Sum_probs=88.7
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHHHH
Q 016955 22 SRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLM 101 (380)
Q Consensus 22 v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 101 (380)
|++.-.+-.=..-++....-+.+.++++.+.... +-+|++..+| |+.+.+= - .....+.+....+.
T Consensus 135 v~v~a~Dftf~gGSmG~v~geKi~ra~e~A~~~r-lPlV~l~~SG-----GARmQEg-------~-~sL~qmak~saa~~ 200 (296)
T CHL00174 135 VALGVMDFQFMGGSMGSVVGEKITRLIEYATNES-LPLIIVCASG-----GARMQEG-------S-LSLMQMAKISSALY 200 (296)
T ss_pred EEEEEECCcccccCcCHHHHHHHHHHHHHHHHcC-CCEEEEECCC-----Ccccccc-------c-hhhhhhHHHHHHHH
Confidence 3333344333667899999999999999987654 6777777643 4443221 1 01112211111111
Q ss_pred HHHhcCCCcEEEEEcchhcchHhHH-hhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchHHHHHhhcCCCcCH
Q 016955 102 YRLNTYLKPHVAIMNGITMGGGAGL-SVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHLGEYLGLTGGRLSG 180 (380)
Q Consensus 102 ~~l~~~~kPvIaav~G~a~GgG~~l-al~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~a~~l~ltG~~i~a 180 (380)
+....-..|.|+++.|+|.||+... ++.||++|+.+++.+++.- .......+|.. +.-.-=+|
T Consensus 201 ~~~~~~~vP~Isvl~gPt~GG~aas~a~l~Diiiae~~A~IgfAG-----------PrVIe~t~ge~-----lpe~fq~a 264 (296)
T CHL00174 201 DYQSNKKLFYISILTSPTTGGVTASFGMLGDIIIAEPNAYIAFAG-----------KRVIEQTLNKT-----VPEGSQAA 264 (296)
T ss_pred HHHHcCCCCEEEEEcCCCchHHHHHHHHcccEEEEeCCeEEEeeC-----------HHHHHHhcCCc-----CCcccccH
Confidence 1123567999999999999998766 5569999998888877631 11121111110 01011246
Q ss_pred HHHHHcCCcccccCCCChh
Q 016955 181 EELLACGFATHYIPSARLP 199 (380)
Q Consensus 181 ~eA~~~GLv~~vv~~~~l~ 199 (380)
+-.++.|+||.+|+..++.
T Consensus 265 e~l~~~G~vD~iV~r~~lr 283 (296)
T CHL00174 265 EYLFDKGLFDLIVPRNLLK 283 (296)
T ss_pred HHHHhCcCceEEEcHHHHH
Confidence 6677899999999987764
No 130
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.57 E-value=0.00036 Score=62.48 Aligned_cols=144 Identities=19% Similarity=0.105 Sum_probs=86.7
Q ss_pred EEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHHHHHHH
Q 016955 25 IILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLMYRL 104 (380)
Q Consensus 25 i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 104 (380)
|.|..| ++..+...+...+-.++.++..+-|.|.=+ |-|+++..- ..++..+
T Consensus 30 I~l~g~-----I~~~~a~~i~aqll~Lea~~~~k~I~lyIN----SpGG~V~aG-------------------~AIydtm 81 (200)
T COG0740 30 IFLGGE-----IEDHMANLIVAQLLFLEAEDPDKDIYLYIN----SPGGSVTAG-------------------LAIYDTM 81 (200)
T ss_pred EEEeee-----echHHHHHHHHHHHHHHhcCCCCCeEEEEe----CCCcccchh-------------------HHHHHHH
Confidence 555554 444556666666666665544444444332 334443221 1244556
Q ss_pred hcCCCcEEEEEcchhcchHhHHhhhCCee--EeecCeeEecccccccccCCCchhHHHh-----------------hcCc
Q 016955 105 NTYLKPHVAIMNGITMGGGAGLSVHGSFC--IATEKTVFAIPEVLIGSHPDAGASYYLS-----------------HLPG 165 (380)
Q Consensus 105 ~~~~kPvIaav~G~a~GgG~~lal~~D~r--ia~~~a~f~~pe~~~G~~p~~g~~~~L~-----------------r~~g 165 (380)
...+.||...|-|.|...|..|+++++.. ++.+++++-+.... |.+-+. ++-+.- ..-|
T Consensus 82 ~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~-gg~~G~-a~Di~i~A~ei~~~~~~l~~i~a~~TG 159 (200)
T COG0740 82 QFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPS-GGAQGQ-ASDIEIHAREILKIKERLNRIYAEHTG 159 (200)
T ss_pred HhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCC-ccCccC-HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 78899999999999999999999999875 77777777665444 222211 111111 0112
Q ss_pred hH---HHHHhhcCCCcCHHHHHHcCCcccccCCCCh
Q 016955 166 HL---GEYLGLTGGRLSGEELLACGFATHYIPSARL 198 (380)
Q Consensus 166 ~~---a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l 198 (380)
.. -....-...-++|+||+++||+|+|....+.
T Consensus 160 q~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~~ 195 (200)
T COG0740 160 QTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESREA 195 (200)
T ss_pred CCHHHHHHhhcccccCCHHHHHHcCCcceecccccc
Confidence 21 1223334455999999999999999987543
No 131
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=97.53 E-value=0.005 Score=58.91 Aligned_cols=151 Identities=15% Similarity=0.191 Sum_probs=95.4
Q ss_pred EcCcEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHH
Q 016955 18 EGASSRTIILNRPN-VLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRT 96 (380)
Q Consensus 18 ~~~~v~~i~lnrp~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~ 96 (380)
.+|.-..|.-|.+. ..-+++....+.+.++++.+... .+-+|.|.-.| |+.+.+ +- -....+ ..
T Consensus 118 I~G~~V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~-~lPlV~l~dsg-----GarmqE-------gi-~sL~~~-ak 182 (292)
T PRK05654 118 IEGMPVVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEE-KCPLVIFSASG-----GARMQE-------GL-LSLMQM-AK 182 (292)
T ss_pred ECCEEEEEEEEecccccCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCC-----Ccchhh-------hh-hHHHhH-HH
Confidence 34444445555555 67889999999999999998775 47777777644 332221 11 111122 12
Q ss_pred HHHHHHHHhcCCCcEEEEEcchhcchHhH-HhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchHHHHHhhcC
Q 016955 97 FYSLMYRLNTYLKPHVAIMNGITMGGGAG-LSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHLGEYLGLTG 175 (380)
Q Consensus 97 ~~~l~~~l~~~~kPvIaav~G~a~GgG~~-lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~a~~l~ltG 175 (380)
....+..+.....|.|+++.|+|.||+.. +++.+|++|+.+++.+++--. ..+...++. .+ .-
T Consensus 183 ~~~a~~~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGp-----------rvie~~~~e---~l--pe 246 (292)
T PRK05654 183 TSAALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGP-----------RVIEQTVRE---KL--PE 246 (292)
T ss_pred HHHHHHHHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCH-----------HHHHhhhhh---hh--hh
Confidence 23344456677899999999999999654 567799999998888777222 111111111 11 11
Q ss_pred CCcCHHHHHHcCCcccccCCCChh
Q 016955 176 GRLSGEELLACGFATHYIPSARLP 199 (380)
Q Consensus 176 ~~i~a~eA~~~GLv~~vv~~~~l~ 199 (380)
+.-+++-+.+.|+||.|+++.++.
T Consensus 247 ~~~~ae~~~~~G~vD~Vv~~~e~r 270 (292)
T PRK05654 247 GFQRAEFLLEHGAIDMIVHRRELR 270 (292)
T ss_pred hhcCHHHHHhCCCCcEEECHHHHH
Confidence 122466677899999999998764
No 132
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=97.50 E-value=0.00063 Score=63.51 Aligned_cols=94 Identities=15% Similarity=0.132 Sum_probs=74.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 016955 34 NALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLMYRLNTYLKPHVA 113 (380)
Q Consensus 34 Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIa 113 (380)
+.++.+...++.++++....+..+- ++|. +-|+++..-. ++...+.+.+.|+++
T Consensus 70 ~~I~i~dse~v~raI~~~~~~~~Id-Lii~------TpGG~v~AA~-------------------~I~~~l~~~~~~v~v 123 (285)
T PF01972_consen 70 RYIDIDDSEFVLRAIREAPKDKPID-LIIH------TPGGLVDAAE-------------------QIARALREHPAKVTV 123 (285)
T ss_pred eeEcHhhHHHHHHHHHhcCCCCceE-EEEE------CCCCcHHHHH-------------------HHHHHHHhCCCCEEE
Confidence 5688899999999999887665443 3332 4455553321 344567788999999
Q ss_pred EEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCC
Q 016955 114 IMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPD 153 (380)
Q Consensus 114 av~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~ 153 (380)
.|+..|+.+|.-++++||-+++++.+.+|--+.++|-.|.
T Consensus 124 ~VP~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA 163 (285)
T PF01972_consen 124 IVPHYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPA 163 (285)
T ss_pred EECcccccHHHHHHHhCCeEEECCCCccCCCCccccCCCh
Confidence 9999999999999999999999999999999999988774
No 133
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.49 E-value=0.0054 Score=58.41 Aligned_cols=150 Identities=12% Similarity=0.149 Sum_probs=94.5
Q ss_pred cCcEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHH
Q 016955 19 GASSRTIILNRPN-VLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTF 97 (380)
Q Consensus 19 ~~~v~~i~lnrp~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~ 97 (380)
+|.-..|.-+.+. ..-+++....+.+.++++.+... .+-+|.+...|++ -+.+ +. .....+. ..
T Consensus 118 ~G~~V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~-~lPlV~l~dSgGa-----RmqE-------g~-~sL~~~a-k~ 182 (285)
T TIGR00515 118 YGMPIVVAVFDFAFMGGSMGSVVGEKFVRAIEKALED-NCPLIIFSASGGA-----RMQE-------AL-LSLMQMA-KT 182 (285)
T ss_pred CCEEEEEEEEeccccCCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCCCc-----cccc-------ch-hHHHhHH-HH
Confidence 4433334444443 67889999999999999998764 5777888765443 2211 11 1112221 22
Q ss_pred HHHHHHHhcCCCcEEEEEcchhcchHhH-HhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchHHHHHhhcCC
Q 016955 98 YSLMYRLNTYLKPHVAIMNGITMGGGAG-LSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHLGEYLGLTGG 176 (380)
Q Consensus 98 ~~l~~~l~~~~kPvIaav~G~a~GgG~~-lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~a~~l~ltG~ 176 (380)
...+.++.....|.|+++-|+|.||+.. +++.+|++|+.++|.+++.-.+ .+...+|.. +.-+
T Consensus 183 ~~~~~~~~~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------Vie~ti~e~-----lpe~ 246 (285)
T TIGR00515 183 SAALAKMSERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPR-----------VIEQTVREK-----LPEG 246 (285)
T ss_pred HHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHH-----------HHHHHhcCc-----cchh
Confidence 2334456677899999999999999654 5579999999999888773221 122222211 1111
Q ss_pred CcCHHHHHHcCCcccccCCCChh
Q 016955 177 RLSGEELLACGFATHYIPSARLP 199 (380)
Q Consensus 177 ~i~a~eA~~~GLv~~vv~~~~l~ 199 (380)
--+|+-+.+.|+||.|+++.++.
T Consensus 247 ~q~ae~~~~~G~vD~iv~~~~~r 269 (285)
T TIGR00515 247 FQTSEFLLEHGAIDMIVHRPEMK 269 (285)
T ss_pred cCCHHHHHhCCCCcEEECcHHHH
Confidence 22455577889999999998764
No 134
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=97.43 E-value=0.0012 Score=69.40 Aligned_cols=85 Identities=15% Similarity=0.046 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcch
Q 016955 39 PMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLMYRLNTYLKPHVAIMNGI 118 (380)
Q Consensus 39 ~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIaav~G~ 118 (380)
-.+.++.++|+.+..|+.|++|||.-.+ +.|+.+..+. .+.+.+..+....|||||..+++
T Consensus 76 ~~l~~i~~~i~~A~~D~~IkgIvL~i~~---~~g~~~~~~~----------------ei~~ai~~fk~sgKpVvA~~~~~ 136 (584)
T TIGR00705 76 ISLFDIVNAIRQAADDRRIEGLVFDLSN---FSGWDSPHLV----------------EIGSALSEFKDSGKPVYAYGTNY 136 (584)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEccC---CCCCCHHHHH----------------HHHHHHHHHHhcCCeEEEEEccc
Confidence 3578999999999999999999998752 2244443321 12233344556789999998887
Q ss_pred hcchHhHHhhhCCeeEeecCeeEec
Q 016955 119 TMGGGAGLSVHGSFCIATEKTVFAI 143 (380)
Q Consensus 119 a~GgG~~lal~~D~ria~~~a~f~~ 143 (380)
+ -+|+.|+.+||-+++.+.+.+++
T Consensus 137 ~-s~~YylAs~AD~I~~~p~G~v~~ 160 (584)
T TIGR00705 137 S-QGQYYLASFADEIILNPMGSVDL 160 (584)
T ss_pred c-chhhhhhhhCCEEEECCCceEEe
Confidence 6 57899999999999999887755
No 135
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=97.39 E-value=0.0034 Score=64.66 Aligned_cols=134 Identities=16% Similarity=0.220 Sum_probs=90.4
Q ss_pred EcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCcccccc--CchHHHHHhccCCHHHHHHHHHHHHHHHHHH
Q 016955 27 LNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGG--DVVTLYRLLSKGRVEECKECFRTFYSLMYRL 104 (380)
Q Consensus 27 lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~--Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 104 (380)
.+.--...++.......+..+++.+..+. +-+|.|.- |+|. ++.+-... ...+.+ ...-...+
T Consensus 64 ~D~t~~gGs~g~~~~~Ki~ra~~~A~~~~-~P~v~l~d-----sgGa~~r~~eg~~~--------l~~~g~-i~~~~~~~ 128 (493)
T PF01039_consen 64 QDFTVLGGSVGEVHGEKIARAIELALENG-LPLVYLVD-----SGGAFLRMQEGVES--------LMGMGR-IFRAIARL 128 (493)
T ss_dssp EETTSGGGTBSHHHHHHHHHHHHHHHHHT-EEEEEEEE-----ESSBCGGGGGHHHH--------HHHHHH-HHHHHHHH
T ss_pred eccceecCCCCcccceeeehHHHHHHHcC-CCcEEecc-----ccccccccchhhhh--------hhhhHH-HHHHHHHH
Confidence 33333677899999999999999988764 55666655 4444 44443221 122222 22233445
Q ss_pred hcCCCcEEEEEcchhcchHhHHhhhCCeeEeecC-eeEecccccccccCCCchhHHHhhcCchHHHHHhhcCCCcCHHHH
Q 016955 105 NTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEK-TVFAIPEVLIGSHPDAGASYYLSHLPGHLGEYLGLTGGRLSGEEL 183 (380)
Q Consensus 105 ~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~-a~f~~pe~~~G~~p~~g~~~~L~r~~g~~a~~l~ltG~~i~a~eA 183 (380)
.. ..|+|+++.|+|.|||..++..||++|++++ +.+++. +...+. ..+|+.++.++.
T Consensus 129 ~~-~iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~-----------GP~vv~----------~~~Ge~~~~~~l 186 (493)
T PF01039_consen 129 SG-GIPQISVVTGPCTGGGAYLAALSDFVIMVKGTARIFLA-----------GPRVVE----------SATGEEVDSEEL 186 (493)
T ss_dssp HT-TS-EEEEEESEEEGGGGHHHHHSSEEEEETTTCEEESS-----------THHHHH----------HHHSSCTSHHHH
T ss_pred hc-CCCeEEEEccccccchhhcccccCccccCccceEEEec-----------cccccc----------cccCccccchhh
Confidence 55 9999999999999999999999999999987 776652 221121 235677777653
Q ss_pred -------HHcCCcccccCCCC
Q 016955 184 -------LACGFATHYIPSAR 197 (380)
Q Consensus 184 -------~~~GLv~~vv~~~~ 197 (380)
...|.+|.++++++
T Consensus 187 gG~~~h~~~sG~~d~v~~de~ 207 (493)
T PF01039_consen 187 GGADVHAAKSGVVDYVVDDEE 207 (493)
T ss_dssp HBHHHHHHTSSSSSEEESSHH
T ss_pred hhhhhhcccCCCceEEEechH
Confidence 47899999998764
No 136
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=97.39 E-value=0.00013 Score=63.29 Aligned_cols=94 Identities=20% Similarity=0.126 Sum_probs=58.6
Q ss_pred hcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEeccccc------------ccc---------cCCCc-----hh-
Q 016955 105 NTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVL------------IGS---------HPDAG-----AS- 157 (380)
Q Consensus 105 ~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~------------~G~---------~p~~g-----~~- 157 (380)
....|||||.++|.+..+|+.|+.+||-+++.+.+.++..-+. +|+ ....+ .+
T Consensus 3 ~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s~ 82 (154)
T PF01343_consen 3 KASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMSE 82 (154)
T ss_dssp HHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--H
T ss_pred cccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCCH
Confidence 4678999999999999999999999999999998886664333 221 11111 00
Q ss_pred ---HHHhhc-----------------CchHHHHHhhcCCCcCHHHHHHcCCcccccCCCCh
Q 016955 158 ---YYLSHL-----------------PGHLGEYLGLTGGRLSGEELLACGFATHYIPSARL 198 (380)
Q Consensus 158 ---~~L~r~-----------------~g~~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l 198 (380)
..+.+. +......-++.|..++|++|++.||||++...+++
T Consensus 83 ~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~~~~~~~~A~~~GLiD~i~~~~~~ 143 (154)
T PF01343_consen 83 EERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADGGVFTAQQALELGLIDEIGTFDEA 143 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCCHEEEHHHHHHTTSSSEETSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhhccccHHHHHHcCchhhcCCHHHH
Confidence 001000 11112233679999999999999999999755443
No 137
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=97.30 E-value=0.0062 Score=62.87 Aligned_cols=157 Identities=17% Similarity=0.168 Sum_probs=100.3
Q ss_pred CcEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHH
Q 016955 20 ASSRTIILNRPN-VLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFY 98 (380)
Q Consensus 20 ~~v~~i~lnrp~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~ 98 (380)
|.-.-|.-|+|. ..-+++++..+...+.++.+.. .++-+|.|.-.++ |..|.+ .+....++...
T Consensus 314 G~~V~vvAnd~~~~~G~~~~~~~~K~~r~i~~a~~-~~lPlV~lvDs~G-~~~g~~-------------~E~~g~~~~~a 378 (512)
T TIGR01117 314 GQSVGIIANQPKVMAGCLDIDSSDKIARFIRFCDA-FNIPIVTFVDVPG-FLPGVN-------------QEYGGIIRHGA 378 (512)
T ss_pred CEEEEEEEeccccccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEEeCcC-ccccHH-------------HHHHHHHHHHH
Confidence 333345555554 4456999999999999998876 4577777766544 444422 11223344555
Q ss_pred HHHHHHhcCCCcEEEEEcchhcchHhHHhhh-----CCeeEeecCeeEecccccccccCCCchhHHHhhc-Cc----hH-
Q 016955 99 SLMYRLNTYLKPHVAIMNGITMGGGAGLSVH-----GSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHL-PG----HL- 167 (380)
Q Consensus 99 ~l~~~l~~~~kPvIaav~G~a~GgG~~lal~-----~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~-~g----~~- 167 (380)
+++..+....+|.|+.|-|.+.|||+ ++++ +|++++.+++.++. .++-++...+.+. +. ..
T Consensus 379 ~~~~a~~~~~vP~isvi~g~~~Gga~-~am~~~~~~~d~~~a~p~a~~~v-------~~pe~a~~i~~~~~l~~~~~~~~ 450 (512)
T TIGR01117 379 KVLYAYSEATVPKVTIITRKAYGGAY-LAMCSKHLGADQVYAWPTAEIAV-------MGPAGAANIIFRKDIKEAKDPAA 450 (512)
T ss_pred HHHHHHHhCCCCEEEEEcCCCchHHH-HHhccccCCCCEEEEcCCCeEee-------cCHHHHHHHHhhhhcccccCHHH
Confidence 67788888999999999999987754 5554 88888887776554 4333333333221 10 11
Q ss_pred HHH--H-hhcCCCcCHHHHHHcCCcccccCCCChh
Q 016955 168 GEY--L-GLTGGRLSGEELLACGFATHYIPSARLP 199 (380)
Q Consensus 168 a~~--l-~ltG~~i~a~eA~~~GLv~~vv~~~~l~ 199 (380)
+.+ + -+.-+..++..+.+.|+||.|+++.+..
T Consensus 451 ~~~~~~~~~~~~~~~~~~~a~~g~vD~VI~P~~tR 485 (512)
T TIGR01117 451 TRKQKIAEYREEFANPYKAAARGYVDDVIEPKQTR 485 (512)
T ss_pred HHHHHHHHHHHhhcCHHHHHhcCCCCeeEChHHHH
Confidence 111 1 1122345788999999999999998763
No 138
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0088 Score=59.49 Aligned_cols=147 Identities=12% Similarity=0.113 Sum_probs=104.9
Q ss_pred cCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeC-CCccccccCchHHHHHhccCCHHHHHHHHHHH
Q 016955 19 GASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGN-GRSFCAGGDVVTLYRLLSKGRVEECKECFRTF 97 (380)
Q Consensus 19 ~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~-g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~ 97 (380)
+..|..+.++ +.+++.+.+.+.+.++.++++. ..+|||.=. ++. +.+.+
T Consensus 25 ~~~v~vi~i~-----g~I~~~s~~~l~r~l~~A~~~~-a~~vvl~ldTPGG------------------------l~~sm 74 (436)
T COG1030 25 EKKVYVIEID-----GAIDPASADYLQRALQSAEEEN-AAAVVLELDTPGG------------------------LLDSM 74 (436)
T ss_pred CCeEEEEEec-----CccCHHHHHHHHHHHHHHHhCC-CcEEEEEecCCCc------------------------hHHHH
Confidence 4467788886 4599999999999999998765 344554322 111 11334
Q ss_pred HHHHHHHhcCCCcEEEEEc---chhcchHhHHhhhCCeeEeecCeeEecccccccc--cCC-Cc-hhHHH------hhcC
Q 016955 98 YSLMYRLNTYLKPHVAIMN---GITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGS--HPD-AG-ASYYL------SHLP 164 (380)
Q Consensus 98 ~~l~~~l~~~~kPvIaav~---G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~--~p~-~g-~~~~L------~r~~ 164 (380)
.++++.+.+.+.||++.|. +.|..+|..++++||+..+++.+.++-...-.+- .+. .. .++.+ ++.-
T Consensus 75 ~~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~~ 154 (436)
T COG1030 75 RQIVRAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEER 154 (436)
T ss_pred HHHHHHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHHHHHHc
Confidence 5677889999999888773 4699999999999999999999998874443222 111 11 12222 2333
Q ss_pred ch--H-HHHHhhcCCCcCHHHHHHcCCcccccCC
Q 016955 165 GH--L-GEYLGLTGGRLSGEELLACGFATHYIPS 195 (380)
Q Consensus 165 g~--~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~ 195 (380)
|+ . |.+++.-...++++||++.|++|-+..+
T Consensus 155 gRN~~~ae~~v~~~~~l~a~eA~~~~vid~iA~~ 188 (436)
T COG1030 155 GRNPTWAERFVTENLSLTAEEALRQGVIDLIARD 188 (436)
T ss_pred CCChHHHHHHhhhccCCChhHHHhcCccccccCC
Confidence 44 3 7889999999999999999999988654
No 139
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=97.19 E-value=0.0063 Score=55.76 Aligned_cols=139 Identities=16% Similarity=0.095 Sum_probs=87.7
Q ss_pred CCHHHHHHHHHHHHHHHhcC---CceEEEEEeCCCccccc---cCchHHHHHhccCCHHHHHHHHHHHHHHHHHHhcCCC
Q 016955 36 LLTPMGVRMTKLYESWEKDS---RVGFVVIKGNGRSFCAG---GDVVTLYRLLSKGRVEECKECFRTFYSLMYRLNTYLK 109 (380)
Q Consensus 36 l~~~~~~eL~~~l~~~~~d~---~v~~vVl~g~g~~F~~G---~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~k 109 (380)
.+.++...+...|-.++.++ ++. +-|-+.|+...+| +++.. ...++..+...+-
T Consensus 49 ~~~~~a~~iiaqLl~L~~~~~~k~I~-lyINSpGGsv~~G~~iG~v~~-------------------glaIyD~m~~ik~ 108 (222)
T PRK12552 49 VGMDVTELIIAQLLYLEFDDPEKPIY-FYINSTGTSWYTGDAIGFETE-------------------AFAICDTMRYIKP 108 (222)
T ss_pred hhHhHHHHHHHHHHHHhccCCCCCEE-EEEeCCCCCcccccccccccc-------------------HHHHHHHHHhcCC
Confidence 34448888888888876644 233 4444555554444 11111 1224455667778
Q ss_pred cEEEEEcchhcchHhHHhhhCCe--eEeecCeeEecccccccccCCCchhHHHh------h-----------cCchH---
Q 016955 110 PHVAIMNGITMGGGAGLSVHGSF--CIATEKTVFAIPEVLIGSHPDAGASYYLS------H-----------LPGHL--- 167 (380)
Q Consensus 110 PvIaav~G~a~GgG~~lal~~D~--ria~~~a~f~~pe~~~G~~p~~g~~~~L~------r-----------~~g~~--- 167 (380)
||...+.|.|.+.|..|++++|- |++.++++|-+.....|.. +-++-+.. + .-|..
T Consensus 109 ~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~--G~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~ 186 (222)
T PRK12552 109 PVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGAR--GQATDIQIRAKEVLHNKRTMLEILSRNTGQTVEK 186 (222)
T ss_pred CeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccc--cCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence 89999999999999999999995 8899999998876654431 11221111 1 11211
Q ss_pred HHHHhhcCCCcCHHHHHHcCCcccccCCC
Q 016955 168 GEYLGLTGGRLSGEELLACGFATHYIPSA 196 (380)
Q Consensus 168 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~ 196 (380)
-..++-...-++|+||+++||||+|+.+.
T Consensus 187 I~~d~~rd~wmsA~EA~eyGliD~Ii~~~ 215 (222)
T PRK12552 187 LSKDTDRMFYLTPQEAKEYGLIDRVLESR 215 (222)
T ss_pred HHHHhcCCCcCCHHHHHHcCCCcEEeccC
Confidence 12223333459999999999999999764
No 140
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=96.83 E-value=0.017 Score=59.64 Aligned_cols=136 Identities=16% Similarity=0.195 Sum_probs=83.0
Q ss_pred EEEcCCC-CCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHHHHHH
Q 016955 25 IILNRPN-VLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLMYR 103 (380)
Q Consensus 25 i~lnrp~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 103 (380)
+.-+... +.-++.......+.++++.+.++. +-+|.|.-+| |..+.+-.. ....+.+.+... .
T Consensus 86 v~a~D~t~~gGS~g~~~~~K~~r~~e~A~~~~-lPlV~l~dSg-----Garm~eg~~--------~l~~~~~~~~~~-~- 149 (512)
T TIGR01117 86 AFAQDFTVMGGSLGEMHAAKIVKIMDLAMKMG-APVVGLNDSG-----GARIQEAVD--------ALKGYGDIFYRN-T- 149 (512)
T ss_pred EEEECCcccccCCCHHHHHHHHHHHHHHHHcC-CCEEEEecCC-----CCCccccch--------hhhhHHHHHHHH-H-
Confidence 3333333 578899999999999999987765 5666665533 333321100 011111111111 1
Q ss_pred HhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCe-eEecccccccccCCCchhHHHhhcCchHHHHHhhcCCCcCHHH
Q 016955 104 LNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKT-VFAIPEVLIGSHPDAGASYYLSHLPGHLGEYLGLTGGRLSGEE 182 (380)
Q Consensus 104 l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a-~f~~pe~~~G~~p~~g~~~~L~r~~g~~a~~l~ltG~~i~a~e 182 (380)
...-..|+|+++.|+|.||+.....+||++|+++++ .+++ ++...+.. .+|+.+++++
T Consensus 150 ~~s~~iP~Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~~-----------aGP~vv~~----------~~Ge~v~~e~ 208 (512)
T TIGR01117 150 IASGVVPQISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFI-----------TGPQVIKT----------VTGEEVTAEQ 208 (512)
T ss_pred HHcCCCcEEEEEecCCCcHHHHHHHhcCceEEeccceEEEe-----------cChHHHHh----------hcCcccchhh
Confidence 123458999999999999998888899999999864 4444 12222222 2455555554
Q ss_pred H-----H--HcCCcccccCCCC
Q 016955 183 L-----L--ACGFATHYIPSAR 197 (380)
Q Consensus 183 A-----~--~~GLv~~vv~~~~ 197 (380)
. + ..|++|.+++++.
T Consensus 209 lGGa~~h~~~sGv~d~~~~de~ 230 (512)
T TIGR01117 209 LGGAMAHNSVSGVAHFIAEDDD 230 (512)
T ss_pred cchHHHhccccceeEEecCChH
Confidence 4 2 5899999987754
No 141
>PRK10949 protease 4; Provisional
Probab=96.79 E-value=0.011 Score=62.27 Aligned_cols=85 Identities=13% Similarity=0.085 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcch
Q 016955 39 PMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLMYRLNTYLKPHVAIMNGI 118 (380)
Q Consensus 39 ~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIaav~G~ 118 (380)
-.+.++.++|+.+..|+.|++|||.-.+. .|..+..+. .+.+.+..+....|||||.-+.+
T Consensus 95 ~~l~div~~i~~Aa~D~rIkgivL~i~s~---gG~~~a~~~----------------eI~~ai~~fk~sGKpVvA~~~~~ 155 (618)
T PRK10949 95 NSLFDIVNTIRQAKDDRNITGIVLDLKNF---AGADQPSMQ----------------YIGKALREFRDSGKPVYAVGDSY 155 (618)
T ss_pred ccHHHHHHHHHHHhcCCCceEEEEEeCCC---CCccHHHHH----------------HHHHHHHHHHHhCCeEEEEecCc
Confidence 34568999999999999999999988631 122222211 12233444556789999965555
Q ss_pred hcchHhHHhhhCCeeEeecCeeEec
Q 016955 119 TMGGGAGLSVHGSFCIATEKTVFAI 143 (380)
Q Consensus 119 a~GgG~~lal~~D~ria~~~a~f~~ 143 (380)
+ -+|..|+.+||-+++.+.+.+++
T Consensus 156 ~-s~~YyLASaAD~I~l~P~G~v~~ 179 (618)
T PRK10949 156 S-QGQYYLASFANKIYLSPQGVVDL 179 (618)
T ss_pred c-chhhhhhhhCCEEEECCCceEEE
Confidence 4 57899999999999999887665
No 142
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=96.63 E-value=0.059 Score=56.26 Aligned_cols=140 Identities=14% Similarity=0.165 Sum_probs=86.9
Q ss_pred EEEcCCC-CCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHHHHHH
Q 016955 25 IILNRPN-VLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLMYR 103 (380)
Q Consensus 25 i~lnrp~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 103 (380)
+.-|.+. +..+++....+.+.++++.+.+. .+-+|.|.-+|+++-.+ ....+. ....+. .+......
T Consensus 133 v~a~D~tv~GGs~g~~~~~Ki~r~~elA~~~-~lPlV~l~DSgGarl~~-q~e~~~---------~~~~~g-~if~~~~~ 200 (569)
T PLN02820 133 FVANDPTVKGGTYYPITVKKHLRAQEIAAQC-RLPCIYLVDSGGANLPR-QAEVFP---------DRDHFG-RIFYNQAR 200 (569)
T ss_pred EEEECCCccCCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcCCcc-cccccc---------hHhHHH-HHHHHHHH
Confidence 4444443 67889999999999999998765 46777776654443211 000000 001111 11112233
Q ss_pred HhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecC-eeEecccccccccCCCchhHHHhhcCchHHHHHhhcCCCcCHHH
Q 016955 104 LNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEK-TVFAIPEVLIGSHPDAGASYYLSHLPGHLGEYLGLTGGRLSGEE 182 (380)
Q Consensus 104 l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~-a~f~~pe~~~G~~p~~g~~~~L~r~~g~~a~~l~ltG~~i~a~e 182 (380)
+.....|.|++|-|.|.|||+....+||++|+++. +.+.+ ++...... .+|+.+++++
T Consensus 201 ls~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~-----------aGP~vV~~----------~~Ge~v~~ee 259 (569)
T PLN02820 201 MSSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFL-----------AGPPLVKA----------ATGEEVSAED 259 (569)
T ss_pred HhCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEe-----------cCHHHHHh----------hcCcccCHHH
Confidence 55667999999999999999999999999999874 55544 11211211 3455666655
Q ss_pred H-----H--HcCCcccccCCCC
Q 016955 183 L-----L--ACGFATHYIPSAR 197 (380)
Q Consensus 183 A-----~--~~GLv~~vv~~~~ 197 (380)
. + ..|.+|.+++++.
T Consensus 260 LGGa~~h~~~sGv~d~~~~de~ 281 (569)
T PLN02820 260 LGGADVHCKVSGVSDHFAQDEL 281 (569)
T ss_pred hCCHHHhcccccccccccCchH
Confidence 4 2 4788888887754
No 143
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=96.55 E-value=0.015 Score=54.59 Aligned_cols=86 Identities=16% Similarity=0.241 Sum_probs=62.1
Q ss_pred HHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchHHHHHhhcCCCcCH
Q 016955 101 MYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHLGEYLGLTGGRLSG 180 (380)
Q Consensus 101 ~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~a~~l~ltG~~i~a 180 (380)
+..+..+++|+||.|=|---+||+-=...+|.+.+-++++++. +.|.++++.++... .. +. -+.....|+|
T Consensus 181 L~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySV------isPEG~AsILWkD~-~k-a~-eAAe~mkita 251 (317)
T COG0825 181 LREMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSV------ISPEGCASILWKDA-SK-AK-EAAEAMKITA 251 (317)
T ss_pred HHHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeee------cChhhhhhhhhcCh-hh-hH-HHHHHcCCCH
Confidence 4557789999999999887666654455589999999999886 56665555443322 21 21 1233457899
Q ss_pred HHHHHcCCcccccCC
Q 016955 181 EELLACGFATHYIPS 195 (380)
Q Consensus 181 ~eA~~~GLv~~vv~~ 195 (380)
++++++|+||.|+|.
T Consensus 252 ~dLk~lgiID~II~E 266 (317)
T COG0825 252 HDLKELGIIDGIIPE 266 (317)
T ss_pred HHHHhCCCcceeccC
Confidence 999999999999975
No 144
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=96.00 E-value=0.058 Score=55.23 Aligned_cols=191 Identities=14% Similarity=0.103 Sum_probs=103.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHHHHHHHhcCC
Q 016955 29 RPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLMYRLNTYL 108 (380)
Q Consensus 29 rp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 108 (380)
.+.+.-++.+-....+.++.+.+..+.-- +|.|.- |+|..+.+=.. ....+ ..++.-..+++..
T Consensus 100 ~TV~gGt~~~~~~~Ki~r~~~~A~~~g~P-~i~l~d-----sgGari~~~v~--------~l~g~-g~iF~~~a~~Sg~- 163 (526)
T COG4799 100 FTVKGGTLGEMTAKKILRAQELAIENGLP-VIGLND-----SGGARIQEGVP--------SLAGY-GRIFYRNARASGV- 163 (526)
T ss_pred CceecccccccccchHHHHHHHHHHcCCC-EEEEEc-----ccccccccCcc--------ccccc-hHHHHHHHHhccC-
Confidence 44477888888888888888888776543 444433 33433322110 01111 1111222344555
Q ss_pred CcEEEEEcchhcchHhHHhhhCCeeEeecCe-eEecccccccccCCCchhHHHhhcCchHHHHHhhcCCCcCHHHH----
Q 016955 109 KPHVAIMNGITMGGGAGLSVHGSFCIATEKT-VFAIPEVLIGSHPDAGASYYLSHLPGHLGEYLGLTGGRLSGEEL---- 183 (380)
Q Consensus 109 kPvIaav~G~a~GgG~~lal~~D~ria~~~a-~f~~pe~~~G~~p~~g~~~~L~r~~g~~a~~l~ltG~~i~a~eA---- 183 (380)
.|.|++|-|.|.|||+.+...||++|+.++. ++.+. +...+.. -||+.++++|.
T Consensus 164 IPqIsvv~G~c~gGgaY~pal~D~~imv~~~~~mflt-----------GP~~ik~----------vtGe~V~~e~LGGa~ 222 (526)
T COG4799 164 IPQISVVMGPCAGGGAYSPALTDFVIMVRDQSYMFLT-----------GPPVIKA----------VTGEEVSAEELGGAQ 222 (526)
T ss_pred CCEEEEEEecCcccccccccccceEEEEcCCccEEee-----------CHHHHHh----------hcCcEeehhhccchh
Confidence 9999999999999999999999999999984 33221 1111111 35555555542
Q ss_pred ---HHcCCcccccCCCChhHHH---HHHHHhhccChhHHH---------HHHHHhcccCCCCcchhhhhHHHHhhhhCCC
Q 016955 184 ---LACGFATHYIPSARLPLIE---EQLRTLAVHDFSAME---------TFLAKHSEHVYPNENSILHRVETLNKCFGHD 248 (380)
Q Consensus 184 ---~~~GLv~~vv~~~~l~~l~---~~l~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 248 (380)
...|.++.+.++|+ +.++ +-++.+++.+..... ...++.......+....-+..+.|.+.|..+
T Consensus 223 vh~~~sGva~~~a~dd~-~Ai~~vr~~lsylp~~~~~~~p~~~~~~~~~~~~~~l~~ivP~d~~~pYDvrevI~rl~D~~ 301 (526)
T COG4799 223 VHARKSGVADLLAEDDE-DAIELVRRLLSYLPSNNREPPPVVPTPDEPDRDDEELDSIVPDDPRKPYDVREVIARLVDDG 301 (526)
T ss_pred hhcccccceeeeecCHH-HHHHHHHHHHHhcCccCCCCCCcCCCCCCcccChhhhcccCCCCCCccccHHHHHHHhcCCc
Confidence 24588888887653 2222 223333322211100 0000000011111122223488888888877
Q ss_pred CHHHHHHHH
Q 016955 249 TVEEIIGAL 257 (380)
Q Consensus 249 ~~~~i~~~L 257 (380)
++.|+-...
T Consensus 302 ~F~E~~~~~ 310 (526)
T COG4799 302 EFLEFKAGY 310 (526)
T ss_pred cHHHHHhhh
Confidence 777776654
No 145
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=95.83 E-value=0.24 Score=46.34 Aligned_cols=136 Identities=16% Similarity=0.207 Sum_probs=90.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHHHHHHHhcCCCcE
Q 016955 32 VLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLMYRLNTYLKPH 111 (380)
Q Consensus 32 ~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPv 111 (380)
-.-.|..-.=..|.++++.+-.+ .+.+|+++.+ .|.-+.+-. -...++. .....+..+.....|.
T Consensus 134 mgGSmGsVvGeki~ra~E~A~e~-k~P~v~f~aS-----GGARMQEg~--------lSLMQMa-ktsaAl~~l~ea~lpy 198 (294)
T COG0777 134 MGGSMGSVVGEKITRAIERAIED-KLPLVLFSAS-----GGARMQEGI--------LSLMQMA-KTSAALKRLSEAGLPY 198 (294)
T ss_pred cccchhHHHHHHHHHHHHHHHHh-CCCEEEEecC-----cchhHhHHH--------HHHHHHH-HHHHHHHHHHhcCCce
Confidence 45677777888899999988765 4788888874 444443311 1122222 2344566778889999
Q ss_pred EEEEcchhcch-HhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchHHHHHhhcCCCcCHHHHHHcCCcc
Q 016955 112 VAIMNGITMGG-GAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHLGEYLGLTGGRLSGEELLACGFAT 190 (380)
Q Consensus 112 Iaav~G~a~Gg-G~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~a~~l~ltG~~i~a~eA~~~GLv~ 190 (380)
|+.+.++..|| -+.+++..|+.||-++|.+||.--++ --+......+ -| -=+++-.++.|+||
T Consensus 199 IsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAGpRV-------IEQTire~LP--------eg-fQ~aEfLlehG~iD 262 (294)
T COG0777 199 ISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGPRV-------IEQTIREKLP--------EG-FQTAEFLLEHGMID 262 (294)
T ss_pred EEEecCCCccchhHhHHhccCeeecCcccccccCcchh-------hhhhhcccCC--------cc-hhhHHHHHHcCCce
Confidence 99999999987 57889999999999888877743321 0111111111 11 12456678999999
Q ss_pred cccCCCCh
Q 016955 191 HYIPSARL 198 (380)
Q Consensus 191 ~vv~~~~l 198 (380)
.||+..++
T Consensus 263 ~iv~R~el 270 (294)
T COG0777 263 MIVHRDEL 270 (294)
T ss_pred eeecHHHH
Confidence 99998665
No 146
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=94.78 E-value=0.7 Score=48.40 Aligned_cols=147 Identities=15% Similarity=0.152 Sum_probs=93.8
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 016955 34 NALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLMYRLNTYLKPHVA 113 (380)
Q Consensus 34 Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIa 113 (380)
-+++.+-.....+.++..+. -++-+|.|.-.++ |..|.+- +.....+...+++.++....+|.|+
T Consensus 380 g~l~~~~a~Kaarfi~lc~~-~~iPlv~l~D~pG-f~~G~~~-------------E~~G~~~~~a~l~~A~a~~~VP~is 444 (569)
T PLN02820 380 GILFTESALKGAHFIELCAQ-RGIPLLFLQNITG-FMVGSRS-------------EASGIAKAGAKMVMAVACAKVPKIT 444 (569)
T ss_pred CccCHHHHHHHHHHHHHHHh-cCCCEEEEEECCC-CCCCHHH-------------HHhhHHHHHHHHHHHHHhCCCCEEE
Confidence 45888999999998888775 5677777765433 5454322 2233556677888899999999999
Q ss_pred EEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhc-C------c------hH-H-HH-H-hhcCC
Q 016955 114 IMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHL-P------G------HL-G-EY-L-GLTGG 176 (380)
Q Consensus 114 av~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~-~------g------~~-a-~~-l-~ltG~ 176 (380)
+|-|.+.|+|..-.....+ ..+-.|..|.+.+|..++.|+...+.+. + | .. + .. + -..-+
T Consensus 445 vi~g~a~G~g~~aM~g~~~---~~d~~~awp~A~i~vmg~e~aa~il~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (569)
T PLN02820 445 IIVGGSFGAGNYGMCGRAY---SPNFLFMWPNARIGVMGGAQAAGVLAQIERENKKRQGIQWSKEEEEAFKAKTVEAYER 521 (569)
T ss_pred EEECCcchHHHHHhcCcCC---CCCEEEECCCCeEEecCHHHHHHHHHHHHhhhhhhccccCCccHHHHHHHHHHHHHHH
Confidence 9999999887643331111 2233444455666767766666666442 1 1 00 0 01 1 12223
Q ss_pred CcCHHHHHHcCCcccccCCCCh
Q 016955 177 RLSGEELLACGFATHYIPSARL 198 (380)
Q Consensus 177 ~i~a~eA~~~GLv~~vv~~~~l 198 (380)
..++..|-..|+||.|+++.+-
T Consensus 522 ~~~p~~aa~~~~vD~VIdP~dT 543 (569)
T PLN02820 522 EANPYYSTARLWDDGVIDPADT 543 (569)
T ss_pred hCCHHHHHHcCCcCcccCHHHH
Confidence 5577788899999999988764
No 147
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=0.32 Score=45.09 Aligned_cols=132 Identities=17% Similarity=0.137 Sum_probs=79.7
Q ss_pred CCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 016955 36 LLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLMYRLNTYLKPHVAIM 115 (380)
Q Consensus 36 l~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIaav 115 (380)
+|.++-+.+...|-.++.+++-|=|.+.-. |-|+++..-. .++..+..+.-||-..+
T Consensus 101 Idd~va~~viaqlL~Ld~ed~~K~I~lyIN----SPGG~vtagl-------------------AIYDtMq~ik~~V~Tic 157 (275)
T KOG0840|consen 101 IDDDVANLVIAQLLYLDSEDPKKPIYLYIN----SPGGSVTAGL-------------------AIYDTMQYIKPDVSTIC 157 (275)
T ss_pred CcHHHHHHHHHHHHHhhccCCCCCeEEEEe----CCCCccchhh-------------------hHHHHHHhhCCCceeee
Confidence 788888888888888888776676766554 5555552211 12334455666776677
Q ss_pred cchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchh-----HHHhhc---C---chH-HHHHhhcCC-------
Q 016955 116 NGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGAS-----YYLSHL---P---GHL-GEYLGLTGG------- 176 (380)
Q Consensus 116 ~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~-----~~L~r~---~---g~~-a~~l~ltG~------- 176 (380)
-|.|.+-|..|..+ .++.-++++|..++=+.-+.|+. -+..+. . -.. -.+.--||+
T Consensus 158 ~G~Aas~aalLLaa-----G~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~i~~ 232 (275)
T KOG0840|consen 158 VGLAASMAALLLAA-----GAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLEVIEK 232 (275)
T ss_pred hhhHHhHHHHHHhc-----CCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHh
Confidence 78887776655443 25566777777776553332221 111110 0 000 112223454
Q ss_pred ------CcCHHHHHHcCCcccccCC
Q 016955 177 ------RLSGEELLACGFATHYIPS 195 (380)
Q Consensus 177 ------~i~a~eA~~~GLv~~vv~~ 195 (380)
.++|+||+++||+|.|+..
T Consensus 233 d~dRd~fmsa~EA~eyGliD~v~~~ 257 (275)
T KOG0840|consen 233 DMDRDRFMSAEEAKEYGLIDKVIDH 257 (275)
T ss_pred hhcccccCCHHHHHHhcchhhhhcC
Confidence 4899999999999999964
No 148
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=93.69 E-value=0.49 Score=48.85 Aligned_cols=159 Identities=19% Similarity=0.202 Sum_probs=94.4
Q ss_pred cCcEEEEEEcCCCCC-CCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHH
Q 016955 19 GASSRTIILNRPNVL-NALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTF 97 (380)
Q Consensus 19 ~~~v~~i~lnrp~~~-Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~ 97 (380)
.|...-|.-|+|... -+++++-.....+.++..+. .++-+|.|.-. ..|..| . ..+....++..
T Consensus 292 ~G~pVGiian~~~~~~G~~~~~~a~K~arfi~lcd~-~~iPlv~l~dt-pGf~~g----~---------~~E~~g~~~~g 356 (493)
T PF01039_consen 292 GGRPVGIIANNPRQRAGALDPDGARKAARFIRLCDA-FNIPLVTLVDT-PGFMPG----P---------EAERAGIIRAG 356 (493)
T ss_dssp TTEEEEEEEE-TTCGGGEB-HHHHHHHHHHHHHHHH-TT--EEEEEEE-CEB--S----H---------HHHHTTHHHHH
T ss_pred CCcceEEEEeccccccccCChHHHHHHHHHHHHHHh-hCCceEEEeec-cccccc----c---------hhhhcchHHHH
Confidence 344444666666522 26999999999999998877 56778877654 234333 1 12233455667
Q ss_pred HHHHHHHhcCCCcEEEEEcchhcchHhHHhhhC----CeeEeecCeeEecccccccccCCCchhHHHhhcC-------c-
Q 016955 98 YSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHG----SFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLP-------G- 165 (380)
Q Consensus 98 ~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~----D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~-------g- 165 (380)
.+++.++..+..|+|+.|-|.+.|||....... |+++|.+++. +|+.++.|+...+.+.- +
T Consensus 357 a~~~~a~~~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~-------~~vm~~e~a~~i~~~~~~~~~~~~~~ 429 (493)
T PF01039_consen 357 ARLLYALAEATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAE-------IGVMGPEGAASILYRDELEAAEAEGA 429 (493)
T ss_dssp HHHHHHHHHH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-E-------EESS-HHHHHHHHTHHHHHHSCHCCH
T ss_pred HHHHHHHHcCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcce-------eeecChhhhheeeehhhhhhhhcccc
Confidence 788899999999999999999999876444433 5665555555 55555555544443221 1
Q ss_pred -hHH---HHHh-hcCCCcCHHHHHHcCCcccccCCCChh
Q 016955 166 -HLG---EYLG-LTGGRLSGEELLACGFATHYIPSARLP 199 (380)
Q Consensus 166 -~~a---~~l~-ltG~~i~a~eA~~~GLv~~vv~~~~l~ 199 (380)
..+ ..+- ..-...++..+...|++|.++++.+..
T Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~D~ii~p~~tR 468 (493)
T PF01039_consen 430 DPEAQRAEKIAEYEDELSSPYRAASRGYVDDIIDPAETR 468 (493)
T ss_dssp SHHHHHHHHHHHHHHHHSSHHHHHHTTSSSEESSGGGHH
T ss_pred hhHHHHHHHHHHHHHhcCCHHHHHhcCCCCCccCHHHHH
Confidence 001 1111 111225788999999999999987753
No 149
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=93.05 E-value=0.15 Score=51.16 Aligned_cols=68 Identities=13% Similarity=0.091 Sum_probs=53.3
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhhhhhh---cccCCCCCCCCCCC
Q 016955 270 LSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEGVRTR---LVEKSFAPKWDPPC 343 (380)
Q Consensus 270 ~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~egv~a~---l~~k~r~P~w~~~~ 343 (380)
.+++++|...+|.+++.+|+.++... .+....+..+...+..+ +.++|+.|++++| .+ | |.|.|.-+.
T Consensus 227 ~~~~~~i~~~~p~av~~~k~~~~~~~-~~~~~~l~~~~~~i~~~---f~~~d~~ei~~al~~~~~-k-r~~~wa~~~ 297 (401)
T PLN02157 227 EEQLKKLLTDDPSVVESCLEKCAEVA-HPEKTGVIRRIDLLEKC---FSHDTVEEIIDSLEIEAG-R-RKDTWCITT 297 (401)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhccc-CCcchhHHHHHHHHHHH---hcCCCHHHHHHHHHhhhc-c-cchHHHHHH
Confidence 36678888899999999999998652 34567777788888888 6799999999999 53 4 678886443
No 150
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=80.85 E-value=12 Score=38.64 Aligned_cols=119 Identities=18% Similarity=0.214 Sum_probs=80.1
Q ss_pred EEEcCCC-CCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHHHHHH
Q 016955 25 IILNRPN-VLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLMYR 103 (380)
Q Consensus 25 i~lnrp~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 103 (380)
|.=|.|. ..-+|+.+....-.+.+ ++..-.++-.|.|.-. ..|..|-+- +....+++-..++.+
T Consensus 328 iIANqp~~~~G~l~~~sa~KaArFI-~~cd~~~iPlv~L~d~-pGFm~G~~~-------------E~~giik~Gakl~~A 392 (526)
T COG4799 328 IIANQPRHLGGVLDIDSADKAARFI-RLCDAFNIPLVFLVDT-PGFMPGTDQ-------------EYGGIIKHGAKLLYA 392 (526)
T ss_pred EEecCccccccccchHHHHHHHHHH-HhhhccCCCeEEEeCC-CCCCCChhH-------------HhChHHHhhhHHHhh
Confidence 5556665 55679999999999988 4444556777776443 567777544 334456677788999
Q ss_pred HhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEecccccccccCCCchhHHHh
Q 016955 104 LNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLS 161 (380)
Q Consensus 104 l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~ 161 (380)
+....+|.|..|-|.+.|||......-.+ ..+-.|+.|.+++|+.-+-|+.-.+.
T Consensus 393 ~aeatVPkitvI~rkayGga~~~M~~~~~---~~~~~~AwP~a~iaVMG~egAv~i~~ 447 (526)
T COG4799 393 VAEATVPKITVITRKAYGGAYYVMGGKAL---GPDFNYAWPTAEIAVMGPEGAVSILY 447 (526)
T ss_pred HhhccCCeEEEEecccccceeeeecCccC---CCceeEecCcceeeecCHHHHHHHHH
Confidence 99999999999999999998643322111 14555566666666655445544444
No 151
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=76.70 E-value=19 Score=36.33 Aligned_cols=153 Identities=16% Similarity=0.204 Sum_probs=98.0
Q ss_pred cEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHH
Q 016955 21 SSRTIILNRPN-VLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYS 99 (380)
Q Consensus 21 ~v~~i~lnrp~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 99 (380)
...-|.-|+|+ ..-.|..+.-....+.++.... ..+-.|.|...++ |-.|.+.... .+.+.-..
T Consensus 349 ~tVgIvgnn~kf~~G~L~s~sa~KgarfIe~c~q-~~IPLi~l~ni~G-fm~g~~~e~~-------------gIaK~gAk 413 (536)
T KOG0540|consen 349 RTVGIVGNNPKFAGGVLFSESAVKGARFIELCDQ-RNIPLIFLQNITG-FMVGRAAEAG-------------GIAKHGAK 413 (536)
T ss_pred EEEEEeccCchhcccccchhhhhhhHHHHHHHHh-cCCcEEEEEccCC-ccccchhhhh-------------chhhhhhh
Confidence 33346677776 5567888887777777766544 5677777777655 8888776432 23344556
Q ss_pred HHHHHhcCCCcEEEEEcchhcchHhH---HhhhCCeeEeecCeeEecccccccccCCCchhHHHhhc-----CchHHHHH
Q 016955 100 LMYRLNTYLKPHVAIMNGITMGGGAG---LSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHL-----PGHLGEYL 171 (380)
Q Consensus 100 l~~~l~~~~kPvIaav~G~a~GgG~~---lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~-----~g~~a~~l 171 (380)
|+.+.....+|-|..+.|.+.||-.. ..++-|+.++.++|++++- -+-++.-.+.+. ....+.+.
T Consensus 414 lv~a~a~akvpkITiit~~syGG~y~m~sr~~~gd~~yawP~A~Iavm-------G~~~a~~Vi~q~~~e~a~~~~~~~~ 486 (536)
T KOG0540|consen 414 LVYAVACAKVPKITIITGGSYGGNYAMCSRGYSGDINYAWPNARIAVM-------GGKQAANVIFQITLEKAVALKAPYI 486 (536)
T ss_pred hhhhhhhccCceEEEEecCccCCcccccccccCCceeEEcccceeeec-------cccchhhhhhhhhhhhhhhhcchHH
Confidence 78888899999999999999996544 4556777777777776552 222222233332 22211122
Q ss_pred hhcCCCcCHHHHHHcCCcccccCCCCh
Q 016955 172 GLTGGRLSGEELLACGFATHYIPSARL 198 (380)
Q Consensus 172 ~ltG~~i~a~eA~~~GLv~~vv~~~~l 198 (380)
=..|.++. |...||+|.++++.+.
T Consensus 487 E~f~npy~---a~~Rg~~D~II~p~~t 510 (536)
T KOG0540|consen 487 EKFGNPYY---AAARGWDDGIIDPSDT 510 (536)
T ss_pred HHhcCccH---HHHhhccccccChhHh
Confidence 22266655 4567999999988764
No 152
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=72.61 E-value=6.5 Score=39.94 Aligned_cols=81 Identities=9% Similarity=-0.007 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHHHHHHHhcCCCcEEEEEc
Q 016955 37 LTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLMYRLNTYLKPHVAIMN 116 (380)
Q Consensus 37 ~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIaav~ 116 (380)
..+...++..+++.+...+++-+|||.=.|+++. ||..|. -..+.++++.+|.|||++|
T Consensus 168 G~~a~~~i~~al~~~~~~~~~dviii~RGGGs~e---DL~~Fn-----------------~e~~~rai~~~~~Pvis~i- 226 (432)
T TIGR00237 168 GEGAVQSIVESIELANTKNECDVLIVGRGGGSLE---DLWSFN-----------------DEKVARAIFLSKIPIISAV- 226 (432)
T ss_pred CccHHHHHHHHHHHhhcCCCCCEEEEecCCCCHH---HhhhcC-----------------cHHHHHHHHcCCCCEEEec-
Confidence 3456778888888887766566666633233332 443332 1247788999999999977
Q ss_pred chhcchHhHHhhhCCeeEeecCe
Q 016955 117 GITMGGGAGLSVHGSFCIATEKT 139 (380)
Q Consensus 117 G~a~GgG~~lal~~D~ria~~~a 139 (380)
||-.-- .-.=+.+|.|..|+++
T Consensus 227 GHe~D~-ti~D~vAd~ra~TPta 248 (432)
T TIGR00237 227 GHETDF-TISDFVADLRAPTPSA 248 (432)
T ss_pred CcCCCc-cHHHHhhhccCCCcHH
Confidence 332211 1233457777777654
No 153
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=70.26 E-value=8.5 Score=37.20 Aligned_cols=80 Identities=9% Similarity=0.041 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHhcC---CceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Q 016955 38 TPMGVRMTKLYESWEKDS---RVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLMYRLNTYLKPHVAI 114 (380)
Q Consensus 38 ~~~~~eL~~~l~~~~~d~---~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIaa 114 (380)
.....+|..+|+.+...+ .+-+|||.=.|+++. ||..|. -..+.++|+.+|.|||++
T Consensus 54 ~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~e---DL~~FN-----------------~e~varai~~~~~Pvisa 113 (319)
T PF02601_consen 54 EGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIE---DLWAFN-----------------DEEVARAIAASPIPVISA 113 (319)
T ss_pred cchHHHHHHHHHHHHhccccccccEEEEecCCCChH---HhcccC-----------------hHHHHHHHHhCCCCEEEe
Confidence 356778888888887654 456666532222221 333332 135778899999999997
Q ss_pred EcchhcchHhHHhhhCCeeEeecCe
Q 016955 115 MNGITMGGGAGLSVHGSFCIATEKT 139 (380)
Q Consensus 115 v~G~a~GgG~~lal~~D~ria~~~a 139 (380)
| ||-.-- .-.=+.||+|..|+++
T Consensus 114 I-GHe~D~-ti~D~vAd~ra~TPta 136 (319)
T PF02601_consen 114 I-GHETDF-TIADFVADLRAPTPTA 136 (319)
T ss_pred c-CCCCCc-hHHHHHHHhhCCCHHH
Confidence 7 333321 2233456777776644
No 154
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=65.69 E-value=18 Score=30.68 Aligned_cols=52 Identities=29% Similarity=0.393 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchh
Q 016955 43 RMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLMYRLNTYLKPHVAIMNGIT 119 (380)
Q Consensus 43 eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIaav~G~a 119 (380)
.+.+.++.+..||++++|++.-.+ + .|- +.+.+..+..... ||||+..-|..
T Consensus 41 ~~~d~l~~~~~D~~t~~I~ly~E~--~---~d~-------------------~~f~~~~~~a~~~-KPVv~lk~Grt 92 (138)
T PF13607_consen 41 DFADLLEYLAEDPDTRVIVLYLEG--I---GDG-------------------RRFLEAARRAARR-KPVVVLKAGRT 92 (138)
T ss_dssp -HHHHHHHHCT-SS--EEEEEES-------S-H-------------------HHHHHHHHHHCCC-S-EEEEE----
T ss_pred CHHHHHHHHhcCCCCCEEEEEccC--C---CCH-------------------HHHHHHHHHHhcC-CCEEEEeCCCc
Confidence 467888888999999999997763 0 111 1233344555556 99999999974
No 155
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=58.81 E-value=41 Score=31.15 Aligned_cols=153 Identities=11% Similarity=-0.001 Sum_probs=84.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCceEEEE--EeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHHHHHHHhcCCCc
Q 016955 33 LNALLTPMGVRMTKLYESWEKDSRVGFVVI--KGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLMYRLNTYLKP 110 (380)
Q Consensus 33 ~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl--~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP 110 (380)
...+..+.-..|.+++.+.-.+..-+.||+ -..|..++- -.++. -...++......+...+...=|
T Consensus 40 ~~~vGl~ea~~lA~~V~~~i~~~~krpIv~lVD~~sQa~gr---reEll---------Gi~~alAhla~a~a~AR~~GHp 107 (234)
T PF06833_consen 40 HGEVGLEEAWALAKAVLDTIRSGPKRPIVALVDVPSQAYGR---REELL---------GINQALAHLAKAYALARLAGHP 107 (234)
T ss_pred CCcccHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCccccch---HHHHh---------hHHHHHHHHHHHHHHHHHcCCC
Confidence 577888888888877766543333333333 222333331 11111 1334455556666677788999
Q ss_pred EEEEEcchhcchHh-HHhhhCCeeEeecCeeEecccccccccCCCchhHHHhhcCchHHHHHhhcCCC--cCHHHHHHcC
Q 016955 111 HVAIMNGITMGGGA-GLSVHGSFCIATEKTVFAIPEVLIGSHPDAGASYYLSHLPGHLGEYLGLTGGR--LSGEELLACG 187 (380)
Q Consensus 111 vIaav~G~a~GgG~-~lal~~D~ria~~~a~f~~pe~~~G~~p~~g~~~~L~r~~g~~a~~l~ltG~~--i~a~eA~~~G 187 (380)
||+.|-|.+++||| .-.+.+|-+||-+ ++.+-..+-.. ..+..++.=..-.++.-+--. ...+--.++|
T Consensus 108 vI~Lv~G~A~SGaFLA~GlqA~rl~AL~-------ga~i~vM~~~s-~ARVTk~~ve~Le~la~s~PvfA~gi~ny~~lG 179 (234)
T PF06833_consen 108 VIGLVYGKAMSGAFLAHGLQANRLIALP-------GAMIHVMGKPS-AARVTKRPVEELEELAKSVPVFAPGIENYAKLG 179 (234)
T ss_pred eEEEEecccccHHHHHHHHHhcchhcCC-------CCeeecCChHH-hHHHhhcCHHHHHHHhhcCCCcCCCHHHHHHhc
Confidence 99999999998885 4556688887765 33333332222 223333311112222222211 3455667899
Q ss_pred CcccccCCCChhHHHHHH
Q 016955 188 FATHYIPSARLPLIEEQL 205 (380)
Q Consensus 188 Lv~~vv~~~~l~~l~~~l 205 (380)
.++++.+.+.-+.+.+++
T Consensus 180 ~l~~l~~~~~~~~~~~~~ 197 (234)
T PF06833_consen 180 ALDELWDGDLADQPAEAL 197 (234)
T ss_pred cHHHHhcccccccccHHH
Confidence 999999865544444443
No 156
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=58.80 E-value=1.3e+02 Score=28.64 Aligned_cols=137 Identities=10% Similarity=0.031 Sum_probs=79.4
Q ss_pred CCCCCCCCCCcEEEEEcCcE--------EEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCC-Ccccccc
Q 016955 3 SLNDCNDADNMVLVEEGASS--------RTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNG-RSFCAGG 73 (380)
Q Consensus 3 ~~~~~~~~~~~v~~~~~~~v--------~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g-~~F~~G~ 73 (380)
..+.+.++++.|.+-+.|.+ -++.++.. .|-++...+....+++.+.--.+.-++.||-|.. +.|.---
T Consensus 102 ~Prlp~~~fDlvivp~HD~~~~~s~~~~Nilpi~Gs--~h~Vt~~~lAa~~e~~~~~~p~~rq~vAVlVGg~nk~f~~~~ 179 (329)
T COG3660 102 DPRLPYNHFDLVIVPYHDWREELSDQGPNILPINGS--PHNVTSQRLAALREAFKHLLPLPRQRVAVLVGGNNKAFVFQE 179 (329)
T ss_pred CCCCCcccceEEeccchhhhhhhhccCCceeeccCC--CCcccHHHhhhhHHHHHhhCCCCCceEEEEecCCCCCCccCH
Confidence 34555667777776665544 36777764 4889999999999999988666666777777764 8887655
Q ss_pred CchHHHHH-----hccCCHHHHHHHHHHHHH-HHHHHh-cCCCcEEEEEcch--hcchHhHHhhhCCeeEeecCeeE
Q 016955 74 DVVTLYRL-----LSKGRVEECKECFRTFYS-LMYRLN-TYLKPHVAIMNGI--TMGGGAGLSVHGSFCIATEKTVF 141 (380)
Q Consensus 74 Dl~~~~~~-----~~~~~~~~~~~~~~~~~~-l~~~l~-~~~kPvIaav~G~--a~GgG~~lal~~D~ria~~~a~f 141 (380)
|-...... ...........+.++.-+ +-..|. +.+--.+...++. -..--+.+..++|++|+++++.=
T Consensus 180 d~a~q~~~~l~k~l~~~g~~~lisfSRRTp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Adyii~TaDSin 256 (329)
T COG3660 180 DKAHQFASLLVKILENQGGSFLISFSRRTPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADYIISTADSIN 256 (329)
T ss_pred HHHHHHHHHHHHHHHhCCceEEEEeecCCcHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcceEEEecchhh
Confidence 54332111 000000000000000000 111111 2444456667777 33345778888999999988753
No 157
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=57.59 E-value=32 Score=32.74 Aligned_cols=51 Identities=33% Similarity=0.464 Sum_probs=34.2
Q ss_pred HHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchhc
Q 016955 46 KLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLMYRLNTYLKPHVAIMNGITM 120 (380)
Q Consensus 46 ~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~ 120 (380)
++|+.++.||+.++||+-|. -|++- .+...++++ . ....||||+.+-|.+.
T Consensus 190 d~L~~fe~Dp~T~~ivmiGE-----iGG~a-----------Ee~AA~~i~-------~-~~~~KPVVa~iaG~ta 240 (293)
T COG0074 190 DALEMFEADPETEAIVMIGE-----IGGPA-----------EEEAAEYIK-------A-NATRKPVVAYIAGRTA 240 (293)
T ss_pred HHHHHHhcCccccEEEEEec-----CCCcH-----------HHHHHHHHH-------H-hccCCCEEEEEeccCC
Confidence 77888999999999999886 11121 122333332 2 2344999999999876
No 158
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=54.03 E-value=19 Score=36.49 Aligned_cols=78 Identities=9% Similarity=0.076 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHhcCCceEEEE-EeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHHHHHHHhcCCCcEEEEEc
Q 016955 38 TPMGVRMTKLYESWEKDSRVGFVVI-KGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLMYRLNTYLKPHVAIMN 116 (380)
Q Consensus 38 ~~~~~eL~~~l~~~~~d~~v~~vVl-~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIaav~ 116 (380)
.....++..+|+.+.... +-+||| +|. +++ -||..|. -..+.++++.+|.|||++|
T Consensus 175 ~~A~~~i~~al~~~~~~~-~Dviii~RGG-GS~---eDL~~Fn-----------------~e~v~~ai~~~~~Pvis~I- 231 (438)
T PRK00286 175 EGAAASIVAAIERANARG-EDVLIVARGG-GSL---EDLWAFN-----------------DEAVARAIAASRIPVISAV- 231 (438)
T ss_pred ccHHHHHHHHHHHhcCCC-CCEEEEecCC-CCH---HHhhccC-----------------cHHHHHHHHcCCCCEEEec-
Confidence 456778888888876633 444444 332 222 2443332 1357788999999999977
Q ss_pred chhcchHhHHhhhCCeeEeecCe
Q 016955 117 GITMGGGAGLSVHGSFCIATEKT 139 (380)
Q Consensus 117 G~a~GgG~~lal~~D~ria~~~a 139 (380)
||-.-- .-.=+.||.|.+|+++
T Consensus 232 GHE~D~-tl~D~vAd~ra~TPta 253 (438)
T PRK00286 232 GHETDF-TIADFVADLRAPTPTA 253 (438)
T ss_pred cCCCCc-cHHHHhhhccCCChHH
Confidence 333211 2233457777777654
No 159
>smart00250 PLEC Plectin repeat.
Probab=53.27 E-value=11 Score=24.20 Aligned_cols=19 Identities=42% Similarity=0.436 Sum_probs=17.4
Q ss_pred hcCCCcCHHHHHHcCCccc
Q 016955 173 LTGGRLSGEELLACGFATH 191 (380)
Q Consensus 173 ltG~~i~a~eA~~~GLv~~ 191 (380)
.||+++|-.||.+.||++.
T Consensus 17 ~t~~~lsv~eA~~~glid~ 35 (38)
T smart00250 17 ETGQKLSVEEALRRGLIDP 35 (38)
T ss_pred CCCCCcCHHHHHHcCCCCc
Confidence 3899999999999999985
No 160
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=53.00 E-value=41 Score=32.67 Aligned_cols=53 Identities=25% Similarity=0.366 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchhc
Q 016955 44 MTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLMYRLNTYLKPHVAIMNGITM 120 (380)
Q Consensus 44 L~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~ 120 (380)
+.+.|+.+..||+.++|++.+.+. | +- .....++++. ....||||+.+-|...
T Consensus 212 ~~D~L~~~~~Dp~T~~Ivl~~E~g----G-~~-----------e~~aa~fi~~--------~~~~KPVVa~~aGrsa 264 (317)
T PTZ00187 212 FIDCLKLFLNDPETEGIILIGEIG----G-TA-----------EEEAAEWIKN--------NPIKKPVVSFIAGITA 264 (317)
T ss_pred HHHHHHHHhhCCCccEEEEEEecC----C-ch-----------hHHHHHHHHh--------hcCCCcEEEEEecCCC
Confidence 456777777788888888877521 1 11 1122233322 2468999999999864
No 161
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=48.79 E-value=29 Score=29.94 Aligned_cols=76 Identities=17% Similarity=0.100 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchhcc-
Q 016955 43 RMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLMYRLNTYLKPHVAIMNGITMG- 121 (380)
Q Consensus 43 eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~G- 121 (380)
...++|..+..||++++|++-+.+++=+. ... ...+...+..... ....+|+|+.|.|-..-
T Consensus 60 ~~~~~l~~~~~Dp~v~vIlvd~~~G~g~~----~~~-----------A~~l~~a~~~~~~--~~~~~pvVa~v~GT~~dp 122 (153)
T PF00549_consen 60 TRNEALEIEAADPEVKVILVDIVGGIGSC----EDP-----------AAGLIPAIKEAKA--EGRKKPVVARVCGTNADP 122 (153)
T ss_dssp HHHHHHHHHHTSTTESEEEEEEESSSSSH----HHH-----------HHHHHHHHSHCTH--TTT-SEEEEEEESTTCHT
T ss_pred HHHHHHHHHhcCCCccEEEEEeccccCch----HHH-----------HHHHHHHHHhccc--cCCCCcEEEEeeeecCCC
Confidence 56677888889999999999885443221 111 1112111111100 34789999999998876
Q ss_pred ----hHhHHhhhCCeeEe
Q 016955 122 ----GGAGLSVHGSFCIA 135 (380)
Q Consensus 122 ----gG~~lal~~D~ria 135 (380)
++....-.+-+.++
T Consensus 123 q~~~~~~~~L~~~G~~v~ 140 (153)
T PF00549_consen 123 QGRMGQAGALEDAGVIVA 140 (153)
T ss_dssp TSCHHHHHHHHCTTCSCH
T ss_pred CCcHHHHHHHHhCCCccc
Confidence 55555544444433
No 162
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=47.27 E-value=30 Score=35.09 Aligned_cols=79 Identities=10% Similarity=0.122 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcch
Q 016955 39 PMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLMYRLNTYLKPHVAIMNGI 118 (380)
Q Consensus 39 ~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIaav~G~ 118 (380)
....+|.++++.++..+++.++|+-= +|+-+.++... +.-.+.++++.++.|||++| ||
T Consensus 176 ~A~~eIv~aI~~an~~~~~DvlIVaR------GGGSiEDLW~F--------------NdE~vaRAi~~s~iPvISAV-GH 234 (440)
T COG1570 176 GAAEEIVEAIERANQRGDVDVLIVAR------GGGSIEDLWAF--------------NDEIVARAIAASRIPVISAV-GH 234 (440)
T ss_pred CcHHHHHHHHHHhhccCCCCEEEEec------CcchHHHHhcc--------------ChHHHHHHHHhCCCCeEeec-cc
Confidence 45677778888887777777766621 23334444322 11247789999999999987 33
Q ss_pred hcchHhHHhhhCCeeEeecCe
Q 016955 119 TMGGGAGLSVHGSFCIATEKT 139 (380)
Q Consensus 119 a~GgG~~lal~~D~ria~~~a 139 (380)
-.-- .-.=+.+|+|-.|+++
T Consensus 235 EtD~-tL~DfVAD~RApTPTa 254 (440)
T COG1570 235 ETDF-TLADFVADLRAPTPTA 254 (440)
T ss_pred CCCc-cHHHhhhhccCCCchH
Confidence 2211 1112346666666543
No 163
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=45.63 E-value=8.8 Score=25.70 Aligned_cols=19 Identities=42% Similarity=0.476 Sum_probs=16.5
Q ss_pred hcCCCcCHHHHHHcCCccc
Q 016955 173 LTGGRLSGEELLACGFATH 191 (380)
Q Consensus 173 ltG~~i~a~eA~~~GLv~~ 191 (380)
-||++++-++|.+.||+|.
T Consensus 17 ~tg~~lsv~~A~~~glId~ 35 (45)
T PF00681_consen 17 ETGERLSVEEAIQRGLIDS 35 (45)
T ss_dssp TTTEEEEHHHHHHTTSS-H
T ss_pred CCCeEEcHHHHHHCCCcCH
Confidence 4899999999999999995
No 164
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=40.28 E-value=1e+02 Score=23.89 Aligned_cols=50 Identities=8% Similarity=-0.060 Sum_probs=36.3
Q ss_pred CcEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCC
Q 016955 12 NMVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNG 66 (380)
Q Consensus 12 ~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g 66 (380)
-.+.++..+++.++++..+ ++......+.+.+..+..++..+.|++--.+
T Consensus 3 ~~i~~~~~~~~~vi~~~G~-----l~~~~~~~~~~~l~~~~~~~~~~~vvidls~ 52 (108)
T TIGR00377 3 LNIETEVQEGVVIVRLSGE-----LDAHTAPLLREKVTPAAERTGPRPIVLDLED 52 (108)
T ss_pred eEEEEEEECCEEEEEEecc-----cccccHHHHHHHHHHHHHhcCCCeEEEECCC
Confidence 3577888899999999753 5556677777777766554567788886665
No 165
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=38.33 E-value=36 Score=34.65 Aligned_cols=83 Identities=17% Similarity=0.240 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhcCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchhcc
Q 016955 42 VRMTKLYESWEKDSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLMYRLNTYLKPHVAIMNGITMG 121 (380)
Q Consensus 42 ~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~G 121 (380)
-.+.+.++.+..||++++|++...+ + .| . . .+.+..++... .||||+..-|..-
T Consensus 189 ~~~~d~l~~l~~D~~t~~I~ly~E~--~---~~------------~---~----~f~~aa~~a~~-~KPVv~~k~Grs~- 242 (447)
T TIGR02717 189 IDESDLLEYLADDPDTKVILLYLEG--I---KD------------G---R----KFLKTAREISK-KKPIVVLKSGTSE- 242 (447)
T ss_pred CCHHHHHHHHhhCCCCCEEEEEecC--C---CC------------H---H----HHHHHHHHHcC-CCCEEEEecCCCh-
Confidence 3567788888888888888887763 1 01 1 1 22233444544 8999999999874
Q ss_pred hHhHHhhhCCeeEeecCeeEecccccccc
Q 016955 122 GGAGLSVHGSFCIATEKTVFAIPEVLIGS 150 (380)
Q Consensus 122 gG~~lal~~D~ria~~~a~f~~pe~~~G~ 150 (380)
.|...+.++-=-++.++..|.--.-+.|+
T Consensus 243 ~g~~aa~sHtgalag~~~~~~a~~~~~Gv 271 (447)
T TIGR02717 243 AGAKAASSHTGALAGSDEAYDAAFKQAGV 271 (447)
T ss_pred hhhhhhhhccccccChHHHHHHHHHHCCe
Confidence 44444443333344444443333344444
No 166
>PLN02522 ATP citrate (pro-S)-lyase
Probab=37.53 E-value=76 Score=33.75 Aligned_cols=52 Identities=17% Similarity=0.250 Sum_probs=32.4
Q ss_pred HHHHHHHHHhcCCceEEEEEeC-CCccccccCchHHHHHhccCCHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchhc
Q 016955 44 MTKLYESWEKDSRVGFVVIKGN-GRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLMYRLNTYLKPHVAIMNGITM 120 (380)
Q Consensus 44 L~~~l~~~~~d~~v~~vVl~g~-g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~ 120 (380)
+.+.|+.++.||++++|++.+. |. .|= .++. +..+.. +..||||+.+-|.+-
T Consensus 210 ~~D~L~~~~~Dp~Tk~IvlygEiGg-----~~e---------------~~f~----ea~~~a-~~~KPVVa~kaGrsa 262 (608)
T PLN02522 210 LSDHVLRFNNIPQIKMIVVLGELGG-----RDE---------------YSLV----EALKQG-KVSKPVVAWVSGTCA 262 (608)
T ss_pred HHHHHHHHhcCCCCCEEEEEEecCc-----hhH---------------HHHH----HHHHHh-cCCCCEEEEeccCCC
Confidence 5666777777888888888775 31 111 1111 122222 268999999999986
No 167
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=36.97 E-value=1.4e+02 Score=27.43 Aligned_cols=59 Identities=17% Similarity=0.152 Sum_probs=40.2
Q ss_pred ccCCCchhHHHhhcCchH-HHH-HhhcC--CCcCHHHHHHcCCcccccCCCChhHHHHHHHHh
Q 016955 150 SHPDAGASYYLSHLPGHL-GEY-LGLTG--GRLSGEELLACGFATHYIPSARLPLIEEQLRTL 208 (380)
Q Consensus 150 ~~p~~g~~~~L~r~~g~~-a~~-l~ltG--~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~ 208 (380)
..|++-|.-+|+.+.... .-. ++.|. +.=+-++|++.|.+|+++.|=..+.+.++|.+.
T Consensus 55 YmPd~~Gi~lL~~ir~~~~~~DVI~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y 117 (224)
T COG4565 55 YMPDGNGIELLPELRSQHYPVDVIVITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRY 117 (224)
T ss_pred ccCCCccHHHHHHHHhcCCCCCEEEEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHH
Confidence 467777777777665432 222 22222 223557999999999999999998888887653
No 168
>PF06744 DUF1215: Protein of unknown function (DUF1215); InterPro: IPR010623 This domain represents a conserved region situated towards the C-terminal end of several hypothetical bacterial proteins of unknown function. A few members resemble the ImcF protein, which has been proposed [] to be involved in Vibrio cholerae cell surface reorganisation that results in increased adherence to epithelial cells line and increased conjugation frequency.
Probab=36.13 E-value=2e+02 Score=23.50 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=22.6
Q ss_pred CCCCCCCCCCcCCCCHHHHHhhccCCC
Q 016955 334 SFAPKWDPPCLEQVTEEMVNAYFERIS 360 (380)
Q Consensus 334 ~r~P~w~~~~~~~v~~~~v~~~f~~~~ 360 (380)
+|.| |++.+-.||+.+++..+|.|-.
T Consensus 53 gRYP-F~~~s~~dv~l~Df~~fF~p~G 78 (125)
T PF06744_consen 53 GRYP-FDPDSSRDVSLADFARFFGPGG 78 (125)
T ss_pred CCCC-CCCCCcccCCHHHHHHHhcCCC
Confidence 3788 8988999999999999999843
No 169
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=33.56 E-value=2e+02 Score=22.31 Aligned_cols=50 Identities=10% Similarity=0.084 Sum_probs=35.6
Q ss_pred EEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCcc
Q 016955 15 LVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSF 69 (380)
Q Consensus 15 ~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F 69 (380)
.++..+++.++.+..| ++-.-..++.+.+..+-..+..+.+||--.+-.|
T Consensus 2 ~~~~~~~~~vi~l~G~-----L~f~~~~~~~~~l~~~~~~~~~~~vilDls~v~~ 51 (106)
T TIGR02886 2 EFEVKGDVLIVRLSGE-----LDHHTAERVRRKIDDAIERRPIKHLILNLKNVTF 51 (106)
T ss_pred eEEEECCEEEEEEecc-----cchhhHHHHHHHHHHHHHhCCCCEEEEECCCCcE
Confidence 4577889999999765 6667777777777765443457888887665333
No 170
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=33.41 E-value=99 Score=29.83 Aligned_cols=13 Identities=46% Similarity=0.672 Sum_probs=11.3
Q ss_pred CCcEEEEEcchhc
Q 016955 108 LKPHVAIMNGITM 120 (380)
Q Consensus 108 ~kPvIaav~G~a~ 120 (380)
.||||+..-|..-
T Consensus 233 ~KPVV~lk~Grs~ 245 (300)
T PLN00125 233 EKPVVAFIAGLTA 245 (300)
T ss_pred CCCEEEEEecCCC
Confidence 8999999988863
No 171
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=30.76 E-value=5e+02 Score=25.06 Aligned_cols=130 Identities=15% Similarity=0.118 Sum_probs=70.6
Q ss_pred CCCCCcEEEEEcCcE--E--EEEEcCCCCCCCCCHHHHHHHHHHH-HHHHhcCCceEEEEEeC-CCccccccC-chHHHH
Q 016955 8 NDADNMVLVEEGASS--R--TIILNRPNVLNALLTPMGVRMTKLY-ESWEKDSRVGFVVIKGN-GRSFCAGGD-VVTLYR 80 (380)
Q Consensus 8 ~~~~~~v~~~~~~~v--~--~i~lnrp~~~Nal~~~~~~eL~~~l-~~~~~d~~v~~vVl~g~-g~~F~~G~D-l~~~~~ 80 (380)
...+..|.+-..+++ . +|..-. ..|.++++-+.+-...+ .++...+.-++.||-|. .+.|--+-+ ...+..
T Consensus 95 ~~~FDlvi~p~HD~~~~~~Nvl~t~g--a~~~i~~~~l~~a~~~~~~~~~~l~~p~~avLIGG~s~~~~~~~~~~~~l~~ 172 (311)
T PF06258_consen 95 PRPFDLVIVPEHDRLPRGPNVLPTLG--APNRITPERLAEAAAAWAPRLAALPRPRVAVLIGGDSKHYRWDEEDAERLLD 172 (311)
T ss_pred ccccCEEEECcccCcCCCCceEeccc--CCCcCCHHHHHHHHHhhhhhhccCCCCeEEEEECcCCCCcccCHHHHHHHHH
Confidence 445666666444433 1 122222 46999999888877666 44555666677777775 366655443 112211
Q ss_pred H----hccC-----------CHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCeeEeecCeeEeccc
Q 016955 81 L----LSKG-----------RVEECKECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFCIATEKTVFAIPE 145 (380)
Q Consensus 81 ~----~~~~-----------~~~~~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe 145 (380)
. .... .+......+. ..+. +.|-+..++|.--+-=+++...||.+++|+++.=.+.|
T Consensus 173 ~l~~~~~~~~~~~~vttSRRTp~~~~~~L~------~~~~--~~~~~~~~~~~~~nPy~~~La~ad~i~VT~DSvSMvsE 244 (311)
T PF06258_consen 173 QLAALAAAYGGSLLVTTSRRTPPEAEAALR------ELLK--DNPGVYIWDGTGENPYLGFLAAADAIVVTEDSVSMVSE 244 (311)
T ss_pred HHHHHHHhCCCeEEEEcCCCCcHHHHHHHH------Hhhc--CCCceEEecCCCCCcHHHHHHhCCEEEEcCccHHHHHH
Confidence 1 1010 1111111111 1111 33445445666666678889999999999987654555
Q ss_pred cc
Q 016955 146 VL 147 (380)
Q Consensus 146 ~~ 147 (380)
+-
T Consensus 245 A~ 246 (311)
T PF06258_consen 245 AA 246 (311)
T ss_pred HH
Confidence 43
No 172
>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=29.43 E-value=1.5e+02 Score=27.73 Aligned_cols=55 Identities=22% Similarity=0.407 Sum_probs=36.4
Q ss_pred HHHHHHHHHhcCCceEEEEEeC-CCccccccCchHHHHHhccCCHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchhc
Q 016955 44 MTKLYESWEKDSRVGFVVIKGN-GRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLMYRLNTYLKPHVAIMNGITM 120 (380)
Q Consensus 44 L~~~l~~~~~d~~v~~vVl~g~-g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~ 120 (380)
+.++|+.+-.|+..+.+|+-|. |+ . ..++..+|++.. .-...+||||+.|-|...
T Consensus 219 FID~L~vFl~D~~t~GIiliGEIGG------~-----------AEe~AA~flk~~-----nSg~~~kPVvsFIAG~tA 274 (329)
T KOG1255|consen 219 FIDCLEVFLEDPETEGIILIGEIGG------S-----------AEEEAAEFLKEY-----NSGSTAKPVVSFIAGVTA 274 (329)
T ss_pred HHHHHHHHhcCcccceEEEEeccCC------h-----------hhHHHHHHHHHh-----ccCCCCCceeEEeecccC
Confidence 6678888888999999999986 21 0 112333443321 124578999999988653
No 173
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=28.87 E-value=87 Score=32.79 Aligned_cols=76 Identities=16% Similarity=0.192 Sum_probs=50.6
Q ss_pred cCCceEEEEEeCCCccccccCchHHHHHhccCCHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhhhCCee
Q 016955 54 DSRVGFVVIKGNGRSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSVHGSFC 133 (380)
Q Consensus 54 d~~v~~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~r 133 (380)
.|+.-|+|-|-..=-+-.|.+...+.. .+.+....-+..+.+.+..+.++..|+|.+||-+..---.++..--++.
T Consensus 322 ~P~~~VlVaTvraLK~hgg~~~~~l~~----en~Eal~sGl~NL~RHIenvr~FGvPvVVAINKFd~DTe~Ei~~I~~~c 397 (557)
T PRK13505 322 KPDAVVIVATVRALKMHGGVAKDDLKE----ENVEALKKGFANLERHIENIRKFGVPVVVAINKFVTDTDAEIAALKELC 397 (557)
T ss_pred CCCEEEEEeehHHHHHcCCCChhhccc----cCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 355555555444333455566555432 2455666667778888888999999999999999887776666554444
No 174
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=28.08 E-value=2.2e+02 Score=22.43 Aligned_cols=48 Identities=15% Similarity=0.201 Sum_probs=40.2
Q ss_pred EEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCC--------ceEEEEEeCC
Q 016955 14 VLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSR--------VGFVVIKGNG 66 (380)
Q Consensus 14 v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~--------v~~vVl~g~g 66 (380)
+.++..+++.+++++.| |+......+.+.+..+..... ++.|||--.+
T Consensus 2 ~~~~~~~~v~ii~~~g~-----l~f~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vIlD~s~ 57 (117)
T PF01740_consen 2 IEIETHDGVLIIRLDGP-----LFFANAEEFRDRIRKLIDEDPERIKKRQTIKNVILDMSG 57 (117)
T ss_dssp CEEEEETTEEEEEEESE-----ESHHHHHHHHHHHHHHHCCSSS--HTSSSSSEEEEEETT
T ss_pred CeeEEECCEEEEEEeeE-----EEHHHHHHHHHHHHHhhhcccccccccccceEEEEEEEe
Confidence 45778899999999876 888999999999999877665 7899997665
No 175
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=28.04 E-value=1.7e+02 Score=27.13 Aligned_cols=53 Identities=11% Similarity=0.004 Sum_probs=38.2
Q ss_pred CCcEEEEEcCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCcc
Q 016955 11 DNMVLVEEGASSRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSF 69 (380)
Q Consensus 11 ~~~v~~~~~~~v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F 69 (380)
+..|.+.-.|.+. .++..+.+|++.+..+...+.++... .+++-|+.|.|..|
T Consensus 5 ~~rillkLsGe~l-----~g~~~~gid~~~i~~~a~~i~~~~~~-g~eV~iVvGGGni~ 57 (238)
T COG0528 5 YMRILLKLSGEAL-----AGEQGFGIDPEVLDRIANEIKELVDL-GVEVAVVVGGGNIA 57 (238)
T ss_pred eEEEEEEeeccee-----cCCCCCCCCHHHHHHHHHHHHHHHhc-CcEEEEEECCCHHH
Confidence 3445555555444 44445779999999999999999765 67888888876544
No 176
>PF14842 FliG_N: FliG N-terminal domain; PDB: 3HJL_A 3AJC_A 3USY_B.
Probab=27.01 E-value=56 Score=26.24 Aligned_cols=86 Identities=17% Similarity=0.167 Sum_probs=44.0
Q ss_pred HHHHhhcCCCcCHHHHHHcCCcccccCCCChhHHHHHHHHhhccChhHHHHHHHHhccc----CCCCcchhhhhHHHHhh
Q 016955 168 GEYLGLTGGRLSGEELLACGFATHYIPSARLPLIEEQLRTLAVHDFSAMETFLAKHSEH----VYPNENSILHRVETLNK 243 (380)
Q Consensus 168 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~~ 243 (380)
|..|+..|+...++=.. ..+++++..+..+++.+..-+.+.+..++++|... ..........-...+.+
T Consensus 12 AilLl~Lgee~Aa~vlk-------~l~~~ei~~i~~~ma~l~~v~~~~~~~Vl~EF~~~~~~~~~~~~gg~~~~~~lL~~ 84 (108)
T PF14842_consen 12 AILLLALGEEAAAEVLK-------HLDEEEIERISREMAKLGSVSPEEVEEVLEEFYDEIRAQGGIVSGGRDFARRLLEK 84 (108)
T ss_dssp HHHHHHS-HHHHHHHHH-------HS-HHHHHHHHHHHHT-----HHHHHHHHHHHHHHHHHTT---S-HHHHHHH-HHH
T ss_pred HHHHHHHCHHHHHHHHc-------cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHccccccChHHHHHHHHHH
Confidence 55566666655544333 34667788888888888777778888888888763 23333444445778888
Q ss_pred hhCCCCHHHHHHHHHhc
Q 016955 244 CFGHDTVEEIIGALESE 260 (380)
Q Consensus 244 ~f~~~~~~~i~~~L~~~ 260 (380)
+|+.+-..+|++.+...
T Consensus 85 alg~~~a~~il~~~~~~ 101 (108)
T PF14842_consen 85 ALGEEKAKEILDRLEQS 101 (108)
T ss_dssp HS---HHHHH-------
T ss_pred HCCHHHHHHHHHHHhcc
Confidence 99998888888877643
No 177
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=25.30 E-value=79 Score=31.85 Aligned_cols=94 Identities=12% Similarity=0.077 Sum_probs=56.4
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEE--EeC-CCccccccCchHHHHHh------ccCCHHHHHH
Q 016955 22 SRTIILNRPNVLNALLTPMGVRMTKLYESWEKDSRVGFVVI--KGN-GRSFCAGGDVVTLYRLL------SKGRVEECKE 92 (380)
Q Consensus 22 v~~i~lnrp~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl--~g~-g~~F~~G~Dl~~~~~~~------~~~~~~~~~~ 92 (380)
|++|.|. .|+.....+|..++..++.+. ++++|| +++ |+..+...++..+.-.. ....... ..
T Consensus 205 IGyI~I~------~F~~~~~~~~~~al~~L~~~~-~~GlIlDLR~N~GG~L~~av~i~~~f~~~g~iv~~~~r~g~~-~~ 276 (406)
T COG0793 205 IGYIRIP------SFGEGTYEDLEKALDELKKQG-AKGLILDLRNNPGGLLSQAVKLAGLFLPSGPIVSTRGRNGKV-NV 276 (406)
T ss_pred EEEEEec------ccccchHHHHHHHHHHHHhcC-CcEEEEEeCCCCCccHHHHHHHHHcccCCCcEEEEecCCCce-ee
Confidence 7777774 477778888999999999877 888887 455 36666666665543210 0000000 00
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEcchhcchHhHHhh
Q 016955 93 CFRTFYSLMYRLNTYLKPHVAIMNGITMGGGAGLSV 128 (380)
Q Consensus 93 ~~~~~~~l~~~l~~~~kPvIaav~G~a~GgG~~lal 128 (380)
+... ..-...++|+|..||+....++=-++.
T Consensus 277 ~~~~-----~~~~~~~~PlvvLvn~~SASAsEI~ag 307 (406)
T COG0793 277 YFSA-----SGEALYDGPLVVLVNEGSASASEIFAG 307 (406)
T ss_pred cccc-----ccccCCCCCEEEEECCCCccHHHHHHH
Confidence 0000 000145799999999999766543333
No 178
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=24.98 E-value=1.4e+02 Score=27.21 Aligned_cols=46 Identities=22% Similarity=0.270 Sum_probs=31.6
Q ss_pred CceEEEEEeCC-CccccccCchHHHHHhccCCHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchhc
Q 016955 56 RVGFVVIKGNG-RSFCAGGDVVTLYRLLSKGRVEECKECFRTFYSLMYRLNTYLKPHVAIMNGITM 120 (380)
Q Consensus 56 ~v~~vVl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIaav~G~a~ 120 (380)
.+.++||||+. ++|+ |..++. .+.+++..+-.+.+||+..+-||-+
T Consensus 59 ky~gfvIsGS~~dAf~---d~dWI~----------------KLcs~~kkld~mkkkvlGICFGHQi 105 (245)
T KOG3179|consen 59 KYDGFVISGSKHDAFS---DADWIK----------------KLCSFVKKLDFMKKKVLGICFGHQI 105 (245)
T ss_pred hhceEEEeCCcccccc---cchHHH----------------HHHHHHHHHHhhccceEEEeccHHH
Confidence 36788999885 7776 443332 3445666777788999988877753
No 179
>PF03464 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination ; PDB: 3AGK_A 2VGN_A 2VGM_A 3J16_A 3IZQ 3IR9_A 3OBW_A 3MCA_B 2QI2_A 3E1Y_D ....
Probab=24.58 E-value=1.3e+02 Score=24.95 Aligned_cols=45 Identities=16% Similarity=0.144 Sum_probs=30.9
Q ss_pred EEEEEEcCCCCCCCC--C----------HHHHHHHHHHHHHH--HhcCCceEEEEEeCC
Q 016955 22 SRTIILNRPNVLNAL--L----------TPMGVRMTKLYESW--EKDSRVGFVVIKGNG 66 (380)
Q Consensus 22 v~~i~lnrp~~~Nal--~----------~~~~~eL~~~l~~~--~~d~~v~~vVl~g~g 66 (380)
+..|+.+-|.|+..= + ...+.++.+.+.+. ...+++++|||.|.|
T Consensus 25 ~~~i~~~ip~K~~~Gg~s~~rf~r~~~~~~f~~~i~~~l~~~f~~~~~~~~~iIiaGPG 83 (133)
T PF03464_consen 25 LQRIESNIPGKHKKGGQSQRRFEREKALEKFFKEIAEALKKYFLVNFDDVKCIIIAGPG 83 (133)
T ss_dssp EEEEE-GHCCCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHCCCHTTTCSEEEEEEST
T ss_pred EEEEEecCCCccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccEEEEECCH
Confidence 346777778876542 2 35667777777776 566789999998864
No 180
>PRK06091 membrane protein FdrA; Validated
Probab=24.54 E-value=2.1e+02 Score=30.13 Aligned_cols=21 Identities=29% Similarity=0.369 Sum_probs=14.9
Q ss_pred HHHHHhcCCCcEEEEEcchhc
Q 016955 100 LMYRLNTYLKPHVAIMNGITM 120 (380)
Q Consensus 100 l~~~l~~~~kPvIaav~G~a~ 120 (380)
++..+..+.||||+..-|..-
T Consensus 271 fl~aar~~~KPVVvlk~Grs~ 291 (555)
T PRK06091 271 IINAMKATGKPVVALFLGYTP 291 (555)
T ss_pred HHHHHhhCCCCEEEEEecCCc
Confidence 334444569999999998754
No 181
>PRK14556 pyrH uridylate kinase; Provisional
Probab=24.22 E-value=2.3e+02 Score=26.49 Aligned_cols=41 Identities=7% Similarity=0.067 Sum_probs=33.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEeCCCcccc
Q 016955 30 PNVLNALLTPMGVRMTKLYESWEKDSRVGFVVIKGNGRSFCA 71 (380)
Q Consensus 30 p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl~g~g~~F~~ 71 (380)
+++.+.+|.+.+..+.+.+..+.+. .+++.|+.|.|..|..
T Consensus 29 ~~~~~~~d~~~~~~~a~~i~~~~~~-g~~i~iVvGGGni~Rg 69 (249)
T PRK14556 29 ADQGFGINVESAQPIINQIKTLTNF-GVELALVVGGGNILRG 69 (249)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHhC-CcEEEEEECCCHHHhC
Confidence 3345779999999999999998763 5899999998877764
No 182
>PF14024 DUF4240: Protein of unknown function (DUF4240)
Probab=23.76 E-value=3.3e+02 Score=22.45 Aligned_cols=80 Identities=18% Similarity=0.116 Sum_probs=47.7
Q ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhCCCCcHHhhhhhh
Q 016955 250 VEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKISLKSIQKARFETLEECLKREYRMSMRMISRQISNDFCEGVRTR 329 (380)
Q Consensus 250 ~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~tk~~l~~~~~~~l~~~l~~e~~~~~~~~~~~~~~d~~egv~a~ 329 (380)
+..|++..+........+.+..+...|++.||.-+..--..+.+... +....+.-.....+.+..++|.....|.+
T Consensus 6 FW~lI~~~~~~~~~d~~~~~~~L~~~L~~l~~~ei~~F~~~~~~~~~----~~~~~~lw~Aa~ii~gg~SdD~F~yFR~w 81 (128)
T PF14024_consen 6 FWELIERAREASGGDPDEVAEPLVELLAKLPPEEIVAFDKILDQLLD----EAYTWDLWAAAYIINGGCSDDGFLYFRCW 81 (128)
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----HhccHHHHHHHHHHcCCCchhhHHHHHHH
Confidence 34455555433333345566667788999998888766666654333 33333433344444444688888888888
Q ss_pred cccC
Q 016955 330 LVEK 333 (380)
Q Consensus 330 l~~k 333 (380)
|+-.
T Consensus 82 LIs~ 85 (128)
T PF14024_consen 82 LISQ 85 (128)
T ss_pred HHHc
Confidence 8844
No 183
>PF12268 DUF3612: Protein of unknown function (DUF3612); InterPro: IPR022055 This domain family is found in bacteria, and is approximately 180 amino acids in length. The family is found in association with PF01381 from PFAM.
Probab=22.89 E-value=58 Score=27.87 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=20.0
Q ss_pred CceEEEEEeCCCccccccCchHHHHH
Q 016955 56 RVGFVVIKGNGRSFCAGGDVVTLYRL 81 (380)
Q Consensus 56 ~v~~vVl~g~g~~F~~G~Dl~~~~~~ 81 (380)
++++.=+.|.....|+|+||+...+.
T Consensus 79 Si~v~D~Agn~hVLCaGIDLNPAi~a 104 (178)
T PF12268_consen 79 SIKVKDLAGNNHVLCAGIDLNPAIDA 104 (178)
T ss_pred ccccccCCCCceeEEecccCCHhHhh
Confidence 45666677778899999999886654
No 184
>PF13877 RPAP3_C: Potential Monad-binding region of RPAP3
Probab=21.63 E-value=1.7e+02 Score=22.51 Aligned_cols=42 Identities=19% Similarity=0.336 Sum_probs=32.0
Q ss_pred CCCCHHHHHHHHHhcccccchHHHHHHHHHHHhcCchHHHHH
Q 016955 246 GHDTVEEIIGALESEVAETNDEWCLSTLKKLREAPPLSLKIS 287 (380)
Q Consensus 246 ~~~~~~~i~~~L~~~~~~~~~~~a~~~a~~i~~~sp~al~~t 287 (380)
+.+.+.+|++.|.....+.+..++.++++.+++.+.+.+.+.
T Consensus 45 ~~~~L~~il~~l~~~~~~~~~~~i~~~L~~L~~~~RF~l~~~ 86 (94)
T PF13877_consen 45 EPEFLSEILEALNEHFIPEDPEFIFEILEALSKVKRFDLAVM 86 (94)
T ss_pred CHHHHHHHHHHHHHHHccCCHHHHHHHHHHhcCCCCHHHHHH
Confidence 344678899998775554456788899999999998888763
Done!