Query 016957
Match_columns 380
No_of_seqs 128 out of 328
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 06:35:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016957.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016957hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yu6_A YTH domain-containing p 100.0 1.2E-53 4.2E-58 374.2 12.8 137 67-208 4-140 (141)
2 2yud_A YTH domain-containing p 100.0 1.5E-52 5E-57 380.6 11.2 147 68-214 23-171 (180)
3 2hd9_A UPF0310 protein PH1033; 97.4 0.0018 6.1E-08 56.4 11.5 131 72-206 2-144 (145)
4 2p5d_A UPF0310 protein mjecl36 96.5 0.0078 2.7E-07 52.5 8.0 129 71-205 4-147 (147)
5 2eve_A Hypothetical protein ps 63.0 35 0.0012 30.4 8.7 131 72-206 2-149 (157)
6 3eop_A Thymocyte nuclear prote 52.2 27 0.00091 31.8 6.2 136 72-208 2-169 (176)
7 2ar1_A Hypothetical protein; s 50.0 42 0.0014 30.3 7.1 134 70-207 18-167 (172)
8 1zce_A Hypothetical protein AT 21.2 1.2E+02 0.0041 26.9 5.0 124 72-207 3-138 (155)
9 2jvf_A De novo protein M7; tet 19.0 22 0.00074 28.6 -0.3 14 183-196 8-21 (96)
10 3zzy_A Polypyrimidine tract-bi 14.1 2E+02 0.0067 24.1 4.5 37 98-134 40-76 (130)
No 1
>2yu6_A YTH domain-containing protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=1.2e-53 Score=374.24 Aligned_cols=137 Identities=45% Similarity=0.726 Sum_probs=132.3
Q ss_pred CCCCceEEEEEeCChhhHHHHhhcCeeeecCCChHHHHHHHhcCCeEEEEEEecCCCceeEEEEeeccCCCCCCccccCC
Q 016957 67 KLYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSSVGWRRDNVWSQG 146 (380)
Q Consensus 67 ~~~~aRFFIIKS~neeNI~~Sik~GIWaTt~~NekkLn~AFk~s~~VyLIFSVN~Sg~FqGyArM~S~id~~~~~~W~~~ 146 (380)
...++|||||||++++||++|++||||+||++||++|++||+++++||||||||+||+|||||+|+|+++..+...|++
T Consensus 4 ~~~~~rfFIiKS~s~~ni~~S~k~gvW~tt~~~~~~L~~Af~~~~~V~L~FSvn~Sg~F~G~A~M~s~~~~~~~~~W~~- 82 (141)
T 2yu6_A 4 GSSGVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSIVYLVFSVQGSGHFQGFSRMSSEIGREKSQDWGS- 82 (141)
T ss_dssp CCCCCEEEEEEESSSHHHHHHHHTCEEECCTTSHHHHHHHHHHSSCEEEEEEESSSSEECEEEEECSCSSSCCCCCCSC-
T ss_pred CCCCcEEEEEEeCCHHHHHHHHHcCEeeccCccHHHHHHHHhcCCcEEEEEEECCCCeEEEEEEEcccCCCCCCccccc-
Confidence 3469999999999999999999999999999999999999999999999999999999999999999999977889986
Q ss_pred CCCCCCCCCceEEEEEEeecCCCCcccCccCCCCCCCCeeeCCCCcccChHHHHHHHHHhcC
Q 016957 147 NGKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPVKISRDCQELPQDIGEALCHLLDG 208 (380)
Q Consensus 147 ~g~~~~wgg~FkVeWL~v~dLPF~~~~HLkNplNeNKPVk~sRDGQEIe~e~G~qLckLF~~ 208 (380)
.+|+|.|+|+||++++|||+.++||+||+|+||||+++||||||++++|++||+||+.
T Consensus 83 ----~~~~g~F~V~Wi~~~~vpf~~~~hl~n~~N~nk~V~~~RDgqEi~~~~G~~l~~if~~ 140 (141)
T 2yu6_A 83 ----AGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWER 140 (141)
T ss_dssp ----SCCCCEEEEEEEECSCEEHHHHTSCEETTSTTEETTCCCTTEEECTTHHHHHHGGGGT
T ss_pred ----cccCCcEEEEEEEeecCChHHhhhcccccCCCCeEEeCCCCEEcCHHHHHHHHHHHhh
Confidence 6999999999999999999999999999999999999999999999999999999975
No 2
>2yud_A YTH domain-containing protein 1; structure genomics, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=1.5e-52 Score=380.60 Aligned_cols=147 Identities=41% Similarity=0.684 Sum_probs=137.0
Q ss_pred CCCceEEEEEeCChhhHHHHhhcCeeeecCCChHHHHHHHhcCCeEEEEEEecCCCceeEEEEeeccCCCCC-CccccCC
Q 016957 68 LYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSSVGWRR-DNVWSQG 146 (380)
Q Consensus 68 ~~~aRFFIIKS~neeNI~~Sik~GIWaTt~~NekkLn~AFk~s~~VyLIFSVN~Sg~FqGyArM~S~id~~~-~~~W~~~ 146 (380)
+.++|||||||+|++||++|++||||+||++|+++|++||+++++||||||||+||+|||||+|+|+++... ...|..+
T Consensus 23 ~~~arfFIIKS~s~~ni~~Sik~gvWatt~~n~~kL~~Af~~~~~V~L~FSVn~Sg~F~G~A~M~s~~~~~~~~~~W~~~ 102 (180)
T 2yud_A 23 LQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSSESHHGGSPIHWVLP 102 (180)
T ss_dssp TTTCEEEEEEESCHHHHHHHHHHTEECCCHHHHHHHHHHHHHSSCEEEEEEETTTSEEEEEEEEEEEEECSSCCCCCCCC
T ss_pred cCceEEEEEEeCCHHHHHHHHHcCEeecccccHHHHHHHHhhCCeEEEEEEeCCCCcEEEEEEEccCCCCCCCCcccccc
Confidence 469999999999999999999999999999999999999999999999999999999999999999998765 4678754
Q ss_pred CCC-CCCCCCceEEEEEEeecCCCCcccCccCCCCCCCCeeeCCCCcccChHHHHHHHHHhcCCCCCcc
Q 016957 147 NGK-NNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPVKISRDCQELPQDIGEALCHLLDGKDDVDG 214 (380)
Q Consensus 147 ~g~-~~~wgg~FkVeWL~v~dLPF~~~~HLkNplNeNKPVk~sRDGQEIe~e~G~qLckLF~~~~~~~s 214 (380)
.+. ..+|+|.|+|+||++++|||..++||+||||+||||+++||||||++++|++||+||..+++++.
T Consensus 103 ~~~~~~~~~g~F~V~Wi~~~dvPf~~~~hl~n~~NenkpV~~sRDgqEI~~~~G~~L~~lf~~~~~~~~ 171 (180)
T 2yud_A 103 AGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCLLFPPDESIDL 171 (180)
T ss_dssp SSCCGGGGCSEEEEEEEECSCEEHHHHTTCCBTTTTSBCTTSCCTTEEECHHHHHHHHHHSCCCSSSCS
T ss_pred CccchhhcCCceEEEEEEeecCCchhhhhccccccCCCeeeeCCCCEEcCHHHHHHHHHhcccCcCccH
Confidence 332 36799999999999999999999999999999999999999999999999999999999887765
No 3
>2hd9_A UPF0310 protein PH1033; pyrococcus horikoshii OT3, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A
Probab=97.36 E-value=0.0018 Score=56.42 Aligned_cols=131 Identities=15% Similarity=0.259 Sum_probs=85.2
Q ss_pred eEEEEEeCChhhHHHHhhcCeeeecCCChHHHHHHHhcCCeEEEEEEecCC--------CceeEEEEeeccCCCCCCccc
Q 016957 72 RYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMS--------GFFQGYAQMMSSVGWRRDNVW 143 (380)
Q Consensus 72 RFFIIKS~neeNI~~Sik~GIWaTt~~NekkLn~AFk~s~~VyLIFSVN~S--------g~FqGyArM~S~id~~~~~~W 143 (380)
+|.|+|| +.+++...++.|+|-. .+..+...++- +.+..+|||+-+.. ..|.|.|++++.+-...+.+|
T Consensus 2 ~YWL~ks-s~d~~~~~~~~g~~GV-n~~arn~lr~m-k~GD~~~fYhs~~~~~~~~~~~~~ivGi~eV~~e~y~D~t~~~ 78 (145)
T 2hd9_A 2 TYWICIT-NRENWEVIKRHNVWGV-PKKHKNTLSRV-KPGDKLVIYVRQEKDKEGNLLEPKIVGIYEVTSEPYVDFSRIF 78 (145)
T ss_dssp CEEEEEE-CHHHHHHHHHHCEEEE-CGGGHHHHTTC-CTTCEEEEEECCEECTTCCEECCEEEEEEEECSCCEECCCCCS
T ss_pred ceEEEeC-CHHHHHHHHHcCcccc-CHHHHHHHHhC-CCCCEEEEEEccccccCCCCCCceEEEEEEEcCCcEeCCCccC
Confidence 5999998 9999999999999977 55555444543 34677777876665 899999999986533333333
Q ss_pred cCCCCCCCCCCCceEEEEEEeecCCCCcccC----ccCCCCCCCCeeeCCCCcccChHHHHHHHHHh
Q 016957 144 SQGNGKNNPWGRSFKVKWLRLNTLPFQKTLH----LKNPLNDYKPVKISRDCQELPQDIGEALCHLL 206 (380)
Q Consensus 144 ~~~~g~~~~wgg~FkVeWL~v~dLPF~~~~H----LkNplNeNKPVk~sRDGQEIe~e~G~qLckLF 206 (380)
.++.-.....--..+|+++.+..+|+..+.. |+|+-+=+.++ .-+--++|+++..+.||+.|
T Consensus 79 ~~~~~~~~~~p~rv~v~~v~~~~i~~~~l~~~l~fi~~k~~w~~~l-~r~gv~pV~~~d~~~I~~~m 144 (145)
T 2hd9_A 79 KPHRGGKETYPYRVKIKPIKIGEINFKPLINDLKFIKNKKRWSMHF-FGKAMRELPEEDYKLIEKLL 144 (145)
T ss_dssp CCTTSSCCCCCEEEEEEEEEEEEEESGGGGGGCTTCCCSTTGGGGT-TTCSEEEECHHHHHHHHHHC
T ss_pred CCcccccCCeeEEEeCEEEeeccCcHHHHHhhhhhhccccccccee-cccCceEcCHHHHHHHHHhh
Confidence 2210001222245678999999999886532 33321111222 02237999999999999865
No 4
>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii}
Probab=96.49 E-value=0.0078 Score=52.47 Aligned_cols=129 Identities=15% Similarity=0.293 Sum_probs=82.8
Q ss_pred ceEEEEEeCChhhHHHHhhcCeeeecCCChHHHHHHHhcCCeEEEEEEec------CCCceeEEEEeeccCCCCCCcccc
Q 016957 71 TRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVN------MSGFFQGYAQMMSSVGWRRDNVWS 144 (380)
Q Consensus 71 aRFFIIKS~neeNI~~Sik~GIWaTt~~NekkLn~AFk~s~~VyLIFSVN------~Sg~FqGyArM~S~id~~~~~~W~ 144 (380)
-+|.|+|+ +.+++...++.|+|-. .+.-+...++-+. +.-+|||... .-..|.|.|++++..-...+.+|.
T Consensus 4 m~YWL~~s-e~~~~~~~~~~g~wGV-n~~arn~lr~Mk~-GD~~~fY~~~~~hs~~~~~~ivGi~eV~~e~y~D~t~~dp 80 (147)
T 2p5d_A 4 MAYWLCIT-NEDNWKVIKEKKIWGV-AERYKNTINKVKV-GDKLIIYEIQRSGKDYKPPYIRGVYEVVSEVYKDSSKIFK 80 (147)
T ss_dssp CCEEEEEE-CHHHHHHHHHHCEEEE-CGGGHHHHTTCCT-TCEEEEEECCBCSTTCBCCEEEEEEEECSCCEECCCCCSC
T ss_pred ccceeeec-CHHHHHHHHHcCeeec-CHHHHHHHHhCCC-CCEEEEEEecccCCCCCCCEEEEEEEEecccccCCcccCc
Confidence 47999995 5678999999999976 5544555554444 5556666332 345899999999865332233333
Q ss_pred CCCC-CCCCCCCceEEEEEEe--ecCCCCccc----CccCC--CCCCCCeeeCCCCcccChHHHHHHHHH
Q 016957 145 QGNG-KNNPWGRSFKVKWLRL--NTLPFQKTL----HLKNP--LNDYKPVKISRDCQELPQDIGEALCHL 205 (380)
Q Consensus 145 ~~~g-~~~~wgg~FkVeWL~v--~dLPF~~~~----HLkNp--lNeNKPVk~sRDGQEIe~e~G~qLckL 205 (380)
...- ..++.--..+|+++.. ..||+..++ ++++. |.+ .-+..+ -++|+++....||++
T Consensus 81 ~~~y~~~~~~w~~VdV~~v~~~~~~v~L~~Lk~~L~fi~~~~~~~~-~L~r~g--v~pV~~~~~~~I~~~ 147 (147)
T 2p5d_A 81 PTPRNPNEKFPYRVKLKEIKVFEPPINFKELIPKLKFITNKKRWSG-HLMGKA--MREIPEEDYKLIVGN 147 (147)
T ss_dssp CBTTBTTCCCCEEEEEEEEEEEEEEEEHHHHGGGCTTCCCSSSCCC---CCCS--EEEECHHHHHHHHTC
T ss_pred CccCcCCCCCceEEEEEEEeecCCccCHHHHHhhhhhcccchhhHH-HHhcCC--ceECCHHHHHHHHhC
Confidence 2100 0123345789999988 888888765 22232 333 224666 899999999988864
No 5
>2eve_A Hypothetical protein pspto5229; alpha-beta protein, structural genomics, PSI, protein struct initiative; HET: MPO; 1.60A {Pseudomonas syringae PV} SCOP: b.122.1.8 PDB: 2g2x_A
Probab=62.98 E-value=35 Score=30.42 Aligned_cols=131 Identities=15% Similarity=0.259 Sum_probs=76.6
Q ss_pred eEEEEEe----CChhhHHHHhhcCeeeecCCChH--HHHHHHhcCCeEEEEEEecCCCceeEEEEeeccC--CCCC----
Q 016957 72 RYFIIKS----LNHQNIQLSIEKEIWATQVMNEP--ILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSSV--GWRR---- 139 (380)
Q Consensus 72 RFFIIKS----~neeNI~~Sik~GIWaTt~~Nek--kLn~AFk~s~~VyLIFSVN~Sg~FqGyArM~S~i--d~~~---- 139 (380)
+|.++|| ++.+++.. .+...|. .-+|-+ .+.++-+.++.|++.=|-.+.....|.|++++.. |...
T Consensus 2 ~YWL~KsEP~~~Siddl~~-~~~~~Wd-GVRNyqArN~mr~Mk~GD~~ffYHS~c~~pgIvGi~eVv~e~ypD~t~fdp~ 79 (157)
T 2eve_A 2 AYWLMKSEPDEFSISDLQR-LGKARWD-GVRNYQARNFLRTMAEGDEFFFYHSSCPEPGIAGIGKIVKTAYPDPTALDPD 79 (157)
T ss_dssp CEEEEEECTTTSCHHHHHH-HSEEEEC-CCCCHHHHHHHHHCCTTCEEEEEECSSSSCEEEEEEEEEEEEEECGGGGCTT
T ss_pred ceeeEecCCCeeeHHHHhc-CCcEecC-CcccHHHHHHHHhcCCCCEEEEEecCCCCCEEEEEEEEeEccCCCccccccc
Confidence 4889998 77788877 4457786 334433 4555656655555544655899999999999863 3322
Q ss_pred CccccCCCC-CCCCCCCceEEEEEEe--ecCCCCcccCccCCCCCCCCeeeC-C-CCcccChHHHHHHHHHh
Q 016957 140 DNVWSQGNG-KNNPWGRSFKVKWLRL--NTLPFQKTLHLKNPLNDYKPVKIS-R-DCQELPQDIGEALCHLL 206 (380)
Q Consensus 140 ~~~W~~~~g-~~~~wgg~FkVeWL~v--~dLPF~~~~HLkNplNeNKPVk~s-R-DGQEIe~e~G~qLckLF 206 (380)
+.+|...+. ...+| ..+.|+-+.. ..|+...++... .+.+..-|+.+ | --|.|.++.-..||+|=
T Consensus 80 s~YyDpks~~~~prw-~~VdV~~v~~~~~pv~L~elK~~~-~L~~m~Lv~~g~RLSV~PVt~~ew~~I~~l~ 149 (157)
T 2eve_A 80 SHYHDAKATTEKNPW-SALDIGFVDIFKNVLGLGYLKQQS-QLEQLPLVQKGSRLSVMPVTAEQWAAILALR 149 (157)
T ss_dssp STTCCTTCCSSCCCC-EEEEEEEEEEEEEEEEHHHHHTCG-GGTTCGGGSTTCCCSEEEECHHHHHHHHHHH
T ss_pred CcCcCcccCCCCCCE-EEEEEEEeeecCCccCHHHHhcCc-ccccCceeeccCCcCceecCHHHHHHHHHHh
Confidence 245533211 11234 2455565554 344444444432 23344444442 3 34788888888888763
No 6
>3eop_A Thymocyte nuclear protein 1; unknown function, nucleus, phosphoprotein; 2.30A {Homo sapiens} SCOP: b.122.1.0
Probab=52.15 E-value=27 Score=31.77 Aligned_cols=136 Identities=13% Similarity=0.235 Sum_probs=82.1
Q ss_pred eEEEEEe-------------CChhhHHHHh-hcCeeeec-CCChHHHHHHHhcCCeEEEEEEecCCCceeEEEEeeccC-
Q 016957 72 RYFIIKS-------------LNHQNIQLSI-EKEIWATQ-VMNEPILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSSV- 135 (380)
Q Consensus 72 RFFIIKS-------------~neeNI~~Si-k~GIWaTt-~~NekkLn~AFk~s~~VyLIFSVN~Sg~FqGyArM~S~i- 135 (380)
+|.++|| ++.+++..+- +...|.=- ...-+.+.++-+.++.|++.-|-.+.....|+|++++..
T Consensus 2 ~yWLmKSEP~~r~e~g~dv~fSidDl~~~~~~~~~WdGVRNyqARN~mR~Mk~GD~~fFYHSnck~pgIvGi~eVv~e~y 81 (176)
T 3eop_A 2 SHWLMKSEPESRLEKGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLGEEAFFYHSNCKEPGIAGLMKIVKEAY 81 (176)
T ss_dssp CEEEEEEBSSCCBSSSSBCBCCSHHHHTSGGGEEECCCCCCHHHHHHHHHCCTTCEEEEEECCSSSCEEEEEEEEEEEEE
T ss_pred ceeeeeeCCCcccccCccceEeHHHHHhccCCCCcccCcccHHHHHHHHhcCCCCEEEEEecCCCCCeEEEEEEEeeccc
Confidence 4777886 5667776653 34567632 222334445655566665555766888999999999863
Q ss_pred -CCCC----CccccCCCC-CCCCCCCceEEEEEEe--ecCCCCcccCcc-------CCCCCCCCeeeCC-CCcccChHHH
Q 016957 136 -GWRR----DNVWSQGNG-KNNPWGRSFKVKWLRL--NTLPFQKTLHLK-------NPLNDYKPVKISR-DCQELPQDIG 199 (380)
Q Consensus 136 -d~~~----~~~W~~~~g-~~~~wgg~FkVeWL~v--~dLPF~~~~HLk-------NplNeNKPVk~sR-DGQEIe~e~G 199 (380)
|... +.++...+. ...+|. .+.|+-++. ..|+...++... -++.+..-|+.+| --|.|.++.-
T Consensus 82 pD~T~fDp~s~YyDpkS~~~~prW~-~VdV~~v~~~~~~vtL~eLK~~~~~~~~~~~~L~~m~Lvr~~RLSV~PVt~~ew 160 (176)
T 3eop_A 82 PDHTQFEKNNPHYDPSSKEDNPKWS-MVDVQFVRMMKRFIPLAELKSYHQAHKATGGPLKNMVLFTRQRLSIQPLTQEEF 160 (176)
T ss_dssp ECGGGTCTTSTTCCTTCCTTSCSCE-EEEEEEEEEEEEEEEHHHHHHHHHHHHHHTCTTSSCHHHHCTTCSEEEECHHHH
T ss_pred cCCcccCCCCCCCCccCcCCCCCEE-EEEEEEeeecCCcccHHHHhcCcccccccccccccCceeccCccCceecCHHHH
Confidence 3321 244533211 123553 477777765 346666665543 2455555566665 4578899999
Q ss_pred HHHHHHhcC
Q 016957 200 EALCHLLDG 208 (380)
Q Consensus 200 ~qLckLF~~ 208 (380)
..||++-+-
T Consensus 161 ~~I~~l~~~ 169 (176)
T 3eop_A 161 DFVLSLEEL 169 (176)
T ss_dssp HHHHHGGGC
T ss_pred HHHHHHHhh
Confidence 999988653
No 7
>2ar1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP, unknown F; 1.60A {Leishmania major} SCOP: b.122.1.8
Probab=50.01 E-value=42 Score=30.30 Aligned_cols=134 Identities=16% Similarity=0.265 Sum_probs=77.4
Q ss_pred CceEEEEEe----CChhhHHHHhhcCeeeecCCChH--HHHHHHhcCCeEEEEEEecCCCceeEEEEeeccC--CCCC--
Q 016957 70 NTRYFIIKS----LNHQNIQLSIEKEIWATQVMNEP--ILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSSV--GWRR-- 139 (380)
Q Consensus 70 ~aRFFIIKS----~neeNI~~Sik~GIWaTt~~Nek--kLn~AFk~s~~VyLIFSVN~Sg~FqGyArM~S~i--d~~~-- 139 (380)
.-+|.++|| ++.+++.. .....|. ..+|-+ .+.++-+.++.|++.-|-.....+.|.|++++.. |...
T Consensus 18 ~M~YWL~KSEP~~~Siddl~~-~~~~~Wd-GVRNyqARN~mr~Mk~GD~vfFYHS~c~~pgIvGi~eVv~e~ypD~t~fd 95 (172)
T 2ar1_A 18 DIHYWLLKSEPHKFSIDDLAK-QKTSPWD-GVRNYAARNNMRAMSVGDKVLFYHSNTKEPGVAGLAEVVRLAYDDFTALD 95 (172)
T ss_dssp SCCEEEEEECTTTSCHHHHHH-HSEEECC-CCCCHHHHHHHHHCCTTCEEEEEECSSSSCEEEEEEEEEEEEEECGGGGC
T ss_pred ccceEEEEcCCCccCHHHHHh-cCceecc-CcCcHHHHHHHHhcCCCCEEEEEecCCCCCEEEEEEEEeeeccCCccccc
Confidence 456999998 67788777 3446786 334433 4455666666665555665899999999999864 3322
Q ss_pred --CccccCCCC-CCCCCCCceEEEEEEe--ecCCCCcccCccCCCCCCCCeeeCC-CCcccChHHHHHHHHHhc
Q 016957 140 --DNVWSQGNG-KNNPWGRSFKVKWLRL--NTLPFQKTLHLKNPLNDYKPVKISR-DCQELPQDIGEALCHLLD 207 (380)
Q Consensus 140 --~~~W~~~~g-~~~~wgg~FkVeWL~v--~dLPF~~~~HLkNplNeNKPVk~sR-DGQEIe~e~G~qLckLF~ 207 (380)
+.+|...+. ...+| ..+.|+-+.. ..|+...++... .+.+..-|+.+| --|.|.++.-..||+|-.
T Consensus 96 p~s~YyDpks~~~~prw-~~VdV~~v~~~~~pvtL~eLK~~~-~L~~m~Lvr~~RLSV~PVt~~ew~~I~~l~~ 167 (172)
T 2ar1_A 96 KTSEYFDPKATKEKNPW-KMVDVKFVARWDTVLTLHELKSRR-ELQKMALFTQRRLSVQPVSASEYAYILRMNE 167 (172)
T ss_dssp TTSTTCCTTCCSSCCCC-EEEEEEEEEEEEEEEEHHHHTTCG-GGTTCHHHHCSSCSEEEECHHHHHHHHHHHH
T ss_pred ccCcccCcccCCCCCCe-EEEEEEEeeecCCcccHHHHhcCc-ccccCeeeeccCCCceecCHHHHHHHHHhhh
Confidence 245543211 11234 2455555543 344444443332 233333334433 346778888888887753
No 8
>1zce_A Hypothetical protein ATU2648; alpha-beta protein., structural genomics, PSI, protein struc initiative; 1.30A {Agrobacterium tumefaciens str} SCOP: b.122.1.8
Probab=21.21 E-value=1.2e+02 Score=26.87 Aligned_cols=124 Identities=15% Similarity=0.165 Sum_probs=72.9
Q ss_pred eEEEEEe----CChhhHHHHhhc-CeeeecCCChH--HHHHHHhcCCeEEEEEEecCCCceeEEEEeeccC--CCCCCcc
Q 016957 72 RYFIIKS----LNHQNIQLSIEK-EIWATQVMNEP--ILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSSV--GWRRDNV 142 (380)
Q Consensus 72 RFFIIKS----~neeNI~~Sik~-GIWaTt~~Nek--kLn~AFk~s~~VyLIFSVN~Sg~FqGyArM~S~i--d~~~~~~ 142 (380)
+|.++|| ++.+++...-.. ..|. .-+|-+ .+.++-+.++.|++.=| |....+.|.|++++.. |....+
T Consensus 3 ~YWL~KSEP~~~Siddl~~~~~~~~~Wd-GVRNyqArN~mr~Mk~GD~~fFYHS-~~~~gIvGi~eVv~e~ypD~t~~d- 79 (155)
T 1zce_A 3 NYWLYKSEPFKWSWEMQKAKGETGEEWT-GVRNYQARNNMRAMKIGDKGFFYHS-NEGLDVVGIVEVCALSHPDSTAEG- 79 (155)
T ss_dssp CEEEEEECTTTSCHHHHHHHGGGCEECC-CCCCHHHHHHHHTCCTTCEEEEEET-TTTCEEEEEEEEEEEEEECTTSTT-
T ss_pred ceEEEEcCCCcCCHHHHHhcCcccceec-CcccHHHHHHHHhccCCCEEEEEEe-CCCCceEEEEEEeeeccCCCCcCC-
Confidence 5899998 677787774442 4586 334443 33445555555554445 5899999999999874 332211
Q ss_pred ccCCCCCCCCCCCceEEEEEEe--ecCCCCcccCccCCCCCCCCeeeCC-CCcccChHHHHHHHHHhc
Q 016957 143 WSQGNGKNNPWGRSFKVKWLRL--NTLPFQKTLHLKNPLNDYKPVKISR-DCQELPQDIGEALCHLLD 207 (380)
Q Consensus 143 W~~~~g~~~~wgg~FkVeWL~v--~dLPF~~~~HLkNplNeNKPVk~sR-DGQEIe~e~G~qLckLF~ 207 (380)
..+| ..+.|+-++. ..|+...++... .+.+..-|+.+| --|.|.++.-..||++-.
T Consensus 80 -------~Prw-~~VdV~~v~~~~~pvtL~eLK~~~-~L~~m~Lvr~~RLSV~PVt~~ew~~I~~l~~ 138 (155)
T 1zce_A 80 -------DLKW-DCVDIRAVCDMPQPVSLKDVKANP-KLEKMSLVTSMRLSVQPVTEEEYLEVCRMGG 138 (155)
T ss_dssp -------CSSC-EEEEEEEEEEEEEEEEHHHHHHCG-GGTTCHHHHCSSCSEEEECHHHHHHHHHHTT
T ss_pred -------CCCe-EEEEEEEccccCCcccHHHHhcCC-CcccCeeeeccCCCceeeCHHHHHHHHHhhC
Confidence 1133 3566676644 345544443321 233333344444 247788899999998774
No 9
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=18.99 E-value=22 Score=28.60 Aligned_cols=14 Identities=43% Similarity=0.539 Sum_probs=11.1
Q ss_pred CCeeeCCCCcccCh
Q 016957 183 KPVKISRDCQELPQ 196 (380)
Q Consensus 183 KPVk~sRDGQEIe~ 196 (380)
--+++.||||||+-
T Consensus 8 itikiqrdgqeiei 21 (96)
T 2jvf_A 8 ITIKIQRDGQEIEI 21 (96)
T ss_dssp EEEEEEETTEEEEE
T ss_pred EEEEEeeCCeEEEE
Confidence 35788999999875
No 10
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=14.05 E-value=2e+02 Score=24.15 Aligned_cols=37 Identities=22% Similarity=0.350 Sum_probs=28.4
Q ss_pred CChHHHHHHHhcCCeEEEEEEecCCCceeEEEEeecc
Q 016957 98 MNEPILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSS 134 (380)
Q Consensus 98 ~NekkLn~AFk~s~~VyLIFSVN~Sg~FqGyArM~S~ 134 (380)
-.+..|.+.|...+.|.=+.-+.+++.||||.+|.+.
T Consensus 40 vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~ 76 (130)
T 3zzy_A 40 VTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADP 76 (130)
T ss_dssp CCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCH
T ss_pred CCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCH
Confidence 3456799999988877554445677899999999865
Done!