Query 016960
Match_columns 380
No_of_seqs 107 out of 1043
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 06:38:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016960.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016960hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dnf_A ISPH, LYTB, 4-hydroxy-3 100.0 1E-101 4E-106 751.0 30.0 280 24-374 1-284 (297)
2 3szu_A ISPH, 4-hydroxy-3-methy 100.0 2E-101 7E-106 757.6 29.6 287 22-374 10-300 (328)
3 3szu_A ISPH, 4-hydroxy-3-methy 93.9 0.88 3E-05 44.8 13.8 172 36-242 108-296 (328)
4 3dnf_A ISPH, LYTB, 4-hydroxy-3 93.4 2.5 8.4E-05 41.0 15.6 169 36-242 96-280 (297)
5 1vq8_F 50S ribosomal protein L 85.5 2 6.9E-05 35.6 6.8 76 277-371 41-119 (120)
6 1rlg_A 50S ribosomal protein L 85.3 2.6 9E-05 34.9 7.4 79 275-372 37-118 (119)
7 3k4h_A Putative transcriptiona 84.8 21 0.00071 31.7 14.5 138 218-368 9-154 (292)
8 3huu_A Transcription regulator 82.2 28 0.00097 31.4 13.8 138 218-368 23-167 (305)
9 1xbi_A 50S ribosomal protein L 81.7 3.2 0.00011 34.5 6.6 76 277-372 41-119 (120)
10 2xdq_A Light-independent proto 81.0 22 0.00077 35.3 13.6 113 25-140 129-286 (460)
11 3qk7_A Transcriptional regulat 81.0 17 0.00059 32.7 11.8 137 218-368 7-149 (294)
12 2h3h_A Sugar ABC transporter, 80.7 23 0.00078 32.1 12.6 133 219-363 3-141 (313)
13 3k9c_A Transcriptional regulat 79.9 12 0.0004 33.8 10.3 124 218-357 13-138 (289)
14 3d8t_A Uroporphyrinogen-III sy 79.7 38 0.0013 31.2 15.1 117 6-127 44-187 (286)
15 2fc3_A 50S ribosomal protein L 79.6 5.3 0.00018 33.3 7.2 78 277-373 40-120 (124)
16 3ksm_A ABC-type sugar transpor 79.2 24 0.00083 30.8 11.9 142 219-369 2-151 (276)
17 3jx9_A Putative phosphoheptose 78.7 5.6 0.00019 35.3 7.5 90 39-159 24-119 (170)
18 3dbi_A Sugar-binding transcrip 78.4 31 0.0011 31.6 12.9 136 218-365 62-201 (338)
19 3uug_A Multiple sugar-binding 77.8 23 0.00079 32.1 11.7 138 218-367 4-153 (330)
20 3o74_A Fructose transport syst 76.9 37 0.0013 29.6 13.0 139 218-369 3-144 (272)
21 3o3m_B Beta subunit 2-hydroxya 76.5 1.5 5E-05 43.3 3.3 53 32-84 198-258 (385)
22 2ale_A SNU13, NHP2/L7AE family 76.4 8.1 0.00028 32.9 7.5 78 279-374 46-127 (134)
23 3m9w_A D-xylose-binding peripl 76.0 27 0.00093 31.6 11.6 138 218-367 3-145 (313)
24 3gv0_A Transcriptional regulat 75.4 45 0.0015 29.7 13.7 138 218-368 9-150 (288)
25 1wcw_A Uroporphyrinogen III sy 74.8 35 0.0012 30.7 11.9 117 6-127 19-162 (261)
26 3brq_A HTH-type transcriptiona 74.7 43 0.0015 29.5 12.4 130 218-360 20-154 (296)
27 3jy6_A Transcriptional regulat 74.2 46 0.0016 29.4 14.0 124 218-356 8-134 (276)
28 1s3l_A Hypothetical protein MJ 73.8 12 0.00042 32.7 8.3 62 18-84 18-83 (190)
29 3l6u_A ABC-type sugar transpor 73.4 47 0.0016 29.4 12.3 91 218-318 9-100 (293)
30 3hcw_A Maltose operon transcri 73.1 47 0.0016 29.8 12.4 137 218-367 8-153 (295)
31 2rgy_A Transcriptional regulat 72.1 54 0.0018 29.2 12.4 129 218-363 9-146 (290)
32 3egc_A Putative ribose operon 71.9 29 0.00098 30.9 10.5 133 218-364 9-144 (291)
33 2k1g_A Lipoprotein SPR; soluti 70.8 4.9 0.00017 34.3 4.8 76 1-104 1-78 (135)
34 4eyg_A Twin-arginine transloca 70.7 16 0.00055 33.6 8.8 94 219-315 8-104 (368)
35 3aek_A Light-independent proto 70.6 28 0.00097 34.6 11.1 103 24-129 148-260 (437)
36 3tb6_A Arabinose metabolism tr 69.8 58 0.002 28.7 13.1 128 218-356 16-148 (298)
37 3bbl_A Regulatory protein of L 69.5 38 0.0013 30.2 10.8 133 218-363 5-143 (287)
38 3h75_A Periplasmic sugar-bindi 68.4 23 0.00079 32.8 9.3 91 218-318 4-97 (350)
39 3rot_A ABC sugar transporter, 67.2 70 0.0024 28.6 14.2 142 218-369 4-154 (297)
40 3o85_A Ribosomal protein L7AE; 67.1 14 0.00047 30.8 6.7 76 277-371 43-121 (122)
41 3mw8_A Uroporphyrinogen-III sy 66.2 24 0.00082 31.5 8.7 121 4-129 11-158 (240)
42 3lft_A Uncharacterized protein 66.1 57 0.0019 29.3 11.4 89 218-315 3-91 (295)
43 3e3m_A Transcriptional regulat 66.0 67 0.0023 29.7 12.1 125 218-356 71-198 (355)
44 2aif_A Ribosomal protein L7A; 64.8 8.8 0.0003 32.6 5.1 71 280-369 56-131 (135)
45 8abp_A L-arabinose-binding pro 64.8 33 0.0011 30.6 9.4 86 219-315 4-90 (306)
46 2iks_A DNA-binding transcripti 63.5 62 0.0021 28.8 11.0 136 218-366 21-159 (293)
47 3ipc_A ABC transporter, substr 62.1 29 0.00098 31.8 8.6 57 256-315 45-101 (356)
48 3hut_A Putative branched-chain 61.3 25 0.00084 32.3 8.0 132 218-352 5-146 (358)
49 3p9z_A Uroporphyrinogen III co 61.2 15 0.00053 32.9 6.4 70 55-129 67-148 (229)
50 3l49_A ABC sugar (ribose) tran 61.2 86 0.003 27.6 13.5 134 218-364 6-144 (291)
51 2dri_A D-ribose-binding protei 61.0 86 0.0029 27.5 13.2 90 218-317 2-92 (271)
52 3g1w_A Sugar ABC transporter; 60.8 53 0.0018 29.3 10.0 128 218-356 5-138 (305)
53 3d8u_A PURR transcriptional re 60.2 87 0.003 27.3 14.4 133 218-364 4-139 (275)
54 3c3k_A Alanine racemase; struc 59.9 93 0.0032 27.5 12.2 131 218-363 9-142 (285)
55 3i45_A Twin-arginine transloca 59.4 47 0.0016 30.9 9.7 58 255-315 47-105 (387)
56 2rjo_A Twin-arginine transloca 59.4 82 0.0028 28.7 11.2 89 218-316 6-97 (332)
57 3td9_A Branched chain amino ac 59.3 36 0.0012 31.3 8.8 135 218-356 17-160 (366)
58 3d02_A Putative LACI-type tran 58.8 97 0.0033 27.4 11.5 89 218-316 5-95 (303)
59 1tjy_A Sugar transport protein 58.6 1.1E+02 0.0037 27.8 12.7 134 218-362 4-145 (316)
60 2x7x_A Sensor protein; transfe 58.0 1.1E+02 0.0038 27.8 11.8 131 218-360 7-143 (325)
61 3e61_A Putative transcriptiona 57.4 98 0.0034 27.0 12.3 132 218-367 9-144 (277)
62 2ioy_A Periplasmic sugar-bindi 56.6 1.1E+02 0.0036 27.1 13.2 88 219-316 3-91 (283)
63 3brs_A Periplasmic binding pro 56.2 1E+02 0.0036 27.0 11.6 133 218-359 6-145 (289)
64 3mmz_A Putative HAD family hyd 55.6 38 0.0013 28.6 7.6 67 70-155 47-113 (176)
65 3jvd_A Transcriptional regulat 55.0 99 0.0034 28.4 11.1 131 218-369 65-198 (333)
66 3kke_A LACI family transcripti 54.8 1.2E+02 0.0041 27.2 12.6 136 218-368 16-154 (303)
67 3lop_A Substrate binding perip 54.2 54 0.0019 30.1 9.1 134 219-355 7-151 (364)
68 1usg_A Leucine-specific bindin 54.1 62 0.0021 29.2 9.3 133 219-354 4-147 (346)
69 3h5o_A Transcriptional regulat 53.5 1.3E+02 0.0046 27.4 12.0 124 218-356 63-189 (339)
70 4es6_A Uroporphyrinogen-III sy 53.0 36 0.0012 30.6 7.5 115 6-125 18-162 (254)
71 3bil_A Probable LACI-family tr 52.8 1.3E+02 0.0044 27.8 11.5 131 218-362 67-201 (348)
72 2jnb_A NHP2-like protein 1; sp 52.8 6.2 0.00021 34.2 2.1 78 276-371 61-142 (144)
73 3j21_Z 50S ribosomal protein L 52.2 38 0.0013 26.8 6.6 44 277-321 27-72 (99)
74 3o21_A Glutamate receptor 3; p 51.6 30 0.001 32.9 7.0 109 256-369 44-154 (389)
75 3eag_A UDP-N-acetylmuramate:L- 51.4 36 0.0012 32.1 7.5 63 56-123 29-94 (326)
76 4f06_A Extracellular ligand-bi 51.3 5.4 0.00019 37.6 1.7 64 256-320 46-110 (371)
77 3h5l_A Putative branched-chain 51.0 55 0.0019 30.9 8.8 59 255-315 56-115 (419)
78 3re1_A Uroporphyrinogen-III sy 50.3 45 0.0015 30.5 7.8 116 5-125 25-170 (269)
79 3o1i_D Periplasmic protein TOR 50.2 67 0.0023 28.4 8.8 91 218-317 6-97 (304)
80 2xvy_A Chelatase, putative; me 50.2 63 0.0022 29.4 8.8 97 5-109 48-158 (269)
81 3kjx_A Transcriptional regulat 50.1 1E+02 0.0034 28.3 10.2 124 218-355 69-195 (344)
82 3n0x_A Possible substrate bind 49.6 14 0.00049 34.5 4.3 55 255-312 47-102 (374)
83 3obb_A Probable 3-hydroxyisobu 49.4 92 0.0031 29.2 9.9 94 44-148 17-119 (300)
84 3on1_A BH2414 protein; structu 49.2 52 0.0018 26.0 7.0 70 277-369 30-100 (101)
85 3cpq_A 50S ribosomal protein L 49.1 38 0.0013 27.4 6.3 43 277-320 33-77 (110)
86 2hsg_A Glucose-resistance amyl 48.8 1.4E+02 0.0047 27.1 10.9 124 218-355 61-187 (332)
87 3gbv_A Putative LACI-family tr 48.7 1.4E+02 0.0048 26.2 12.4 93 218-316 9-103 (304)
88 4gnr_A ABC transporter substra 48.3 11 0.00038 34.7 3.3 65 255-321 49-114 (353)
89 2yva_A DNAA initiator-associat 48.2 68 0.0023 27.3 8.2 23 94-116 107-130 (196)
90 2qh8_A Uncharacterized protein 47.7 65 0.0022 29.1 8.4 88 218-314 9-97 (302)
91 3g85_A Transcriptional regulat 47.7 36 0.0012 30.2 6.5 133 218-365 12-147 (289)
92 2fn9_A Ribose ABC transporter, 47.4 1.5E+02 0.005 26.1 10.8 89 218-316 3-92 (290)
93 3hsy_A Glutamate receptor 2; l 47.1 12 0.00042 35.3 3.4 111 256-370 35-146 (376)
94 3snr_A Extracellular ligand-bi 46.4 21 0.0007 32.6 4.7 58 256-316 44-102 (362)
95 2kkn_A Uncharacterized protein 46.4 65 0.0022 27.7 7.8 83 56-159 52-143 (178)
96 3hs3_A Ribose operon repressor 46.3 1.3E+02 0.0045 26.5 10.1 131 218-368 11-145 (277)
97 3dfz_A SIRC, precorrin-2 dehyd 45.7 17 0.00059 33.3 4.0 74 281-375 91-168 (223)
98 3sg0_A Extracellular ligand-bi 45.2 23 0.00079 32.6 4.9 93 218-316 28-122 (386)
99 2a22_A Vacuolar protein sortin 45.0 54 0.0018 28.8 7.2 66 15-84 16-86 (215)
100 3qek_A NMDA glutamate receptor 44.8 68 0.0023 29.9 8.2 89 219-313 7-100 (384)
101 2fep_A Catabolite control prot 44.7 1.7E+02 0.0057 26.0 12.6 124 218-355 17-143 (289)
102 3h5t_A Transcriptional regulat 44.5 72 0.0025 29.6 8.3 121 218-352 69-196 (366)
103 4evq_A Putative ABC transporte 44.5 54 0.0019 30.1 7.4 95 218-315 17-114 (375)
104 1jr2_A Uroporphyrinogen-III sy 44.3 90 0.0031 28.6 8.8 114 7-125 38-186 (286)
105 4gbj_A 6-phosphogluconate dehy 43.9 57 0.0019 30.5 7.5 94 44-148 19-119 (297)
106 3n0w_A ABC branched chain amin 43.4 24 0.00081 32.9 4.7 93 219-314 8-104 (379)
107 1gud_A ALBP, D-allose-binding 43.3 1E+02 0.0036 27.3 8.9 90 219-316 3-93 (288)
108 3qfa_C Thioredoxin; protein-pr 43.3 62 0.0021 25.0 6.5 45 225-279 14-58 (116)
109 3trj_A Phosphoheptose isomeras 42.7 1.1E+02 0.0038 26.7 8.8 23 94-116 112-135 (201)
110 3lkb_A Probable branched-chain 42.7 76 0.0026 29.5 8.2 132 219-354 9-152 (392)
111 2qu7_A Putative transcriptiona 42.4 1.8E+02 0.006 25.6 10.4 129 218-363 9-140 (288)
112 1jye_A Lactose operon represso 42.0 2.1E+02 0.0071 26.3 12.2 134 218-364 62-198 (349)
113 3i09_A Periplasmic branched-ch 41.4 25 0.00085 32.6 4.5 58 255-314 45-102 (375)
114 1eiw_A Hypothetical protein MT 41.1 24 0.00083 29.0 3.9 45 275-321 34-83 (111)
115 2h1v_A Ferrochelatase; rossman 40.6 60 0.0021 30.8 7.2 91 36-143 119-210 (310)
116 1w41_A 50S ribosomal protein L 40.6 35 0.0012 27.0 4.7 43 277-320 28-72 (101)
117 1x92_A APC5045, phosphoheptose 40.0 1.1E+02 0.0038 26.1 8.3 35 94-128 111-149 (199)
118 3miz_A Putative transcriptiona 40.0 60 0.002 29.0 6.7 137 218-369 14-155 (301)
119 3clk_A Transcription regulator 39.9 1.5E+02 0.0051 26.2 9.4 123 218-355 9-135 (290)
120 4f11_A Gamma-aminobutyric acid 39.8 13 0.00045 35.5 2.4 58 255-313 58-115 (433)
121 3ff4_A Uncharacterized protein 39.8 42 0.0014 27.8 5.2 30 101-131 87-116 (122)
122 3v7e_A Ribosome-associated pro 39.4 22 0.00077 27.3 3.2 46 275-320 21-66 (82)
123 1t1j_A Hypothetical protein; s 38.6 25 0.00085 29.7 3.6 39 275-314 77-118 (125)
124 2p9j_A Hypothetical protein AQ 38.2 85 0.0029 25.4 6.9 74 68-161 42-116 (162)
125 2fqx_A Membrane lipoprotein TM 38.1 1.7E+02 0.0057 27.0 9.7 130 218-358 5-142 (318)
126 3cl6_A PUUE allantoinase; URIC 38.1 1.3E+02 0.0045 28.0 9.0 84 36-119 76-180 (308)
127 2xzm_U Ribosomal protein L7AE 38.1 53 0.0018 27.5 5.6 47 274-320 33-80 (126)
128 1dp4_A Atrial natriuretic pept 37.1 26 0.0009 33.2 4.0 56 256-313 47-107 (435)
129 2vk2_A YTFQ, ABC transporter p 36.9 2.3E+02 0.0077 25.2 10.3 89 218-316 3-92 (306)
130 2hqb_A Transcriptional activat 36.8 1.3E+02 0.0044 27.4 8.6 141 218-370 6-150 (296)
131 1lbq_A Ferrochelatase; rossman 36.7 1.5E+02 0.0053 28.9 9.6 70 58-143 162-231 (362)
132 3hno_A Pyrophosphate-dependent 36.5 19 0.00064 36.3 2.9 54 268-321 91-145 (419)
133 2jyx_A Lipoprotein SPR; soluti 36.4 36 0.0012 28.4 4.3 76 1-104 1-78 (136)
134 2vhw_A Alanine dehydrogenase; 36.3 1.8E+02 0.0061 28.1 9.9 44 90-133 81-133 (377)
135 2fb6_A Conserved hypothetical 36.0 18 0.00063 29.7 2.4 99 25-149 8-116 (117)
136 3hcn_A Ferrochelatase, mitocho 35.9 1.8E+02 0.006 28.5 9.8 91 36-143 132-226 (359)
137 1wn2_A Peptidyl-tRNA hydrolase 35.6 26 0.00091 29.2 3.3 61 284-368 56-118 (121)
138 3hn7_A UDP-N-acetylmuramate-L- 34.8 76 0.0026 32.2 7.3 93 19-123 14-108 (524)
139 2fvy_A D-galactose-binding per 34.7 2.3E+02 0.008 24.8 9.8 89 218-316 3-93 (309)
140 2lbw_A H/ACA ribonucleoprotein 34.3 44 0.0015 27.5 4.5 44 277-320 32-76 (121)
141 3om0_A Glutamate receptor, ion 34.2 23 0.00079 33.3 3.1 56 256-313 45-101 (393)
142 1pjq_A CYSG, siroheme synthase 33.9 33 0.0011 34.3 4.3 59 281-358 72-134 (457)
143 3jyw_G 60S ribosomal protein L 33.8 50 0.0017 27.3 4.7 46 274-320 34-81 (113)
144 3v7q_A Probable ribosomal prot 33.8 41 0.0014 26.7 4.1 42 279-320 33-74 (101)
145 3saj_A Glutamate receptor 1; r 33.4 19 0.00067 33.9 2.4 110 256-370 42-153 (384)
146 1s5p_A NAD-dependent deacetyla 33.2 32 0.0011 31.5 3.7 57 255-316 146-203 (235)
147 3eaf_A ABC transporter, substr 32.1 41 0.0014 31.5 4.4 94 256-354 51-150 (391)
148 1vb5_A Translation initiation 32.0 52 0.0018 30.9 5.1 58 95-153 108-169 (276)
149 4fe7_A Xylose operon regulator 31.9 91 0.0031 29.7 6.9 120 218-357 26-151 (412)
150 3cs3_A Sugar-binding transcrip 31.2 1.8E+02 0.0061 25.4 8.4 126 218-363 9-136 (277)
151 1jeo_A MJ1247, hypothetical pr 31.2 2.3E+02 0.0077 23.5 8.9 84 40-127 27-117 (180)
152 1kyq_A Met8P, siroheme biosynt 31.0 29 0.00099 32.8 3.1 59 281-358 106-172 (274)
153 1k1e_A Deoxy-D-mannose-octulos 30.9 1.4E+02 0.0047 24.9 7.2 69 67-154 40-109 (180)
154 1yc5_A NAD-dependent deacetyla 30.3 42 0.0014 30.8 4.1 56 255-315 157-215 (246)
155 1jdp_A NPR-C, atrial natriuret 30.3 30 0.001 33.1 3.1 56 256-312 57-113 (441)
156 1dbq_A Purine repressor; trans 30.2 2.7E+02 0.0093 24.2 10.3 125 218-355 8-136 (289)
157 2k6g_A Replication factor C su 30.2 1.6E+02 0.0054 23.9 7.1 86 12-124 10-97 (109)
158 1rlk_A Hypothetical protein TA 30.1 37 0.0013 28.0 3.3 62 283-368 51-114 (117)
159 1ma3_A SIR2-AF2, transcription 29.9 50 0.0017 30.5 4.5 72 274-373 177-251 (253)
160 1m2k_A Silent information regu 29.4 54 0.0019 30.1 4.7 39 275-316 172-213 (249)
161 2o20_A Catabolite control prot 29.2 3.2E+02 0.011 24.6 14.3 132 218-363 64-198 (332)
162 1qpz_A PURA, protein (purine n 29.2 3.2E+02 0.011 24.7 11.8 131 218-362 59-194 (340)
163 3gyb_A Transcriptional regulat 28.9 1.7E+02 0.0057 25.6 7.7 121 218-357 6-130 (280)
164 4dll_A 2-hydroxy-3-oxopropiona 28.8 2.7E+02 0.0092 25.8 9.5 106 24-147 31-145 (320)
165 2j13_A Polysaccharide deacetyl 28.7 2.3E+02 0.0077 25.6 8.8 44 40-83 129-175 (247)
166 3mq4_A Mglur7, metabotropic gl 28.6 34 0.0012 33.8 3.3 32 282-313 116-147 (481)
167 3fwz_A Inner membrane protein 28.5 89 0.003 25.2 5.4 73 97-177 8-83 (140)
168 3kg2_A Glutamate receptor 2; I 28.3 34 0.0012 35.6 3.4 109 256-370 35-146 (823)
169 3iz5_f 60S ribosomal protein L 28.0 75 0.0026 26.0 4.8 46 274-320 35-82 (112)
170 2i5i_A UPF0249 protein EF_3048 27.9 29 0.00098 32.3 2.5 46 24-75 4-53 (263)
171 4ddd_A Immunogenic protein; ss 27.8 97 0.0033 29.0 6.2 25 347-371 261-285 (327)
172 2xbl_A Phosphoheptose isomeras 27.6 91 0.0031 26.4 5.5 41 277-318 113-154 (198)
173 3imk_A Putative molybdenum car 27.4 59 0.002 28.7 4.2 82 281-372 73-157 (158)
174 1tk9_A Phosphoheptose isomeras 27.4 2.7E+02 0.0091 23.1 9.2 34 94-127 108-145 (188)
175 3etn_A Putative phosphosugar i 27.4 2.4E+02 0.0083 24.7 8.5 97 39-137 44-153 (220)
176 2cc0_A Acetyl-xylan esterase; 27.3 2.9E+02 0.01 23.6 11.6 102 39-153 77-185 (195)
177 3ij5_A 3-deoxy-D-manno-octulos 27.1 1.7E+02 0.006 25.6 7.5 68 70-156 84-152 (211)
178 3tqv_A Nicotinate-nucleotide p 26.8 1.5E+02 0.0051 28.3 7.3 94 24-125 170-269 (287)
179 4hwg_A UDP-N-acetylglucosamine 26.5 1E+02 0.0036 29.7 6.3 52 261-315 73-125 (385)
180 3mn1_A Probable YRBI family ph 26.4 2.2E+02 0.0076 23.9 7.9 67 70-155 54-121 (189)
181 2f48_A Diphosphate--fructose-6 26.2 49 0.0017 34.5 4.1 42 268-309 153-195 (555)
182 4a3s_A 6-phosphofructokinase; 26.0 74 0.0025 30.6 5.1 48 269-321 81-128 (319)
183 1z2w_A Vacuolar protein sortin 25.9 80 0.0028 27.0 4.9 83 56-159 42-132 (192)
184 3pdu_A 3-hydroxyisobutyrate de 25.9 1.5E+02 0.0052 26.8 7.0 92 45-148 16-117 (287)
185 3u7q_B Nitrogenase molybdenum- 25.8 2.2E+02 0.0076 29.0 8.9 58 26-83 180-253 (523)
186 3s99_A Basic membrane lipoprot 25.8 1.7E+02 0.0059 28.1 7.7 130 218-358 27-162 (356)
187 1pg5_A Aspartate carbamoyltran 25.7 79 0.0027 30.2 5.2 58 97-155 95-160 (299)
188 1y5e_A Molybdenum cofactor bio 25.5 26 0.00088 30.3 1.6 71 284-368 17-97 (169)
189 3k35_A NAD-dependent deacetyla 25.3 85 0.0029 30.4 5.4 58 255-315 183-241 (318)
190 2qv5_A AGR_C_5032P, uncharacte 24.8 91 0.0031 29.3 5.3 72 69-161 146-226 (261)
191 1pea_A Amidase operon; gene re 24.8 70 0.0024 29.8 4.6 133 218-354 8-149 (385)
192 3mvn_A UDP-N-acetylmuramate:L- 24.7 58 0.002 27.6 3.7 111 229-368 46-161 (163)
193 1tk9_A Phosphoheptose isomeras 24.6 1E+02 0.0035 25.8 5.3 39 280-318 109-148 (188)
194 3f4w_A Putative hexulose 6 pho 24.4 3.3E+02 0.011 23.2 9.5 40 109-150 93-133 (211)
195 2yva_A DNAA initiator-associat 24.4 1.1E+02 0.0038 25.9 5.5 38 280-317 108-146 (196)
196 1jx6_A LUXP protein; protein-l 24.3 3.9E+02 0.013 24.0 9.9 90 218-315 44-137 (342)
197 2e4u_A Metabotropic glutamate 24.2 59 0.002 32.6 4.2 30 282-311 116-145 (555)
198 1x92_A APC5045, phosphoheptose 23.6 1.1E+02 0.0038 26.1 5.3 38 280-317 112-150 (199)
199 2b1k_A Thiol:disulfide interch 23.6 2.8E+02 0.0097 22.1 7.7 108 258-375 57-166 (168)
200 3trj_A Phosphoheptose isomeras 23.4 97 0.0033 27.1 5.0 39 280-318 113-152 (201)
201 3gnh_A L-lysine, L-arginine ca 23.2 4E+02 0.014 24.5 9.6 94 34-129 161-270 (403)
202 4g85_A Histidine-tRNA ligase, 23.1 3.3E+02 0.011 27.3 9.5 41 110-153 437-480 (517)
203 3sds_A Ornithine carbamoyltran 23.1 78 0.0027 31.1 4.6 58 97-155 122-199 (353)
204 2h78_A Hibadh, 3-hydroxyisobut 23.0 4.2E+02 0.014 23.9 9.8 91 45-147 18-118 (302)
205 1xty_A PTH, peptidyl-tRNA hydr 23.0 59 0.002 26.9 3.3 61 284-368 55-117 (120)
206 1m3s_A Hypothetical protein YC 22.7 3.3E+02 0.011 22.6 9.1 94 40-137 24-124 (186)
207 1mio_B Nitrogenase molybdenum 22.7 4.2E+02 0.014 26.1 10.1 105 24-130 131-269 (458)
208 2zv3_A PTH, peptidyl-tRNA hydr 22.5 37 0.0013 27.9 1.9 62 283-368 49-112 (115)
209 3dfz_A SIRC, precorrin-2 dehyd 22.4 3.5E+02 0.012 24.4 8.7 90 7-110 14-104 (223)
210 2f5x_A BUGD; periplasmic bindi 22.3 3.9E+02 0.013 25.0 9.3 89 272-373 176-264 (312)
211 3u31_A SIR2A, transcriptional 22.3 1.3E+02 0.0044 28.6 5.9 36 280-315 215-251 (290)
212 3o3m_A Alpha subunit 2-hydroxy 22.2 81 0.0028 31.0 4.6 53 32-84 220-288 (408)
213 2i2w_A Phosphoheptose isomeras 22.2 1E+02 0.0035 26.8 4.9 38 280-317 130-168 (212)
214 1ny1_A Probable polysaccharide 22.1 4.1E+02 0.014 23.6 9.1 44 40-83 117-163 (240)
215 2y8u_A Chitin deacetylase; hyd 21.7 4.2E+02 0.014 23.5 9.0 43 41-83 107-151 (230)
216 3izc_H 60S ribosomal protein R 21.6 1.5E+02 0.0051 28.0 6.1 75 279-371 145-221 (256)
217 3h6g_A Glutamate receptor, ion 21.5 37 0.0013 31.8 2.0 39 273-313 63-101 (395)
218 1vpq_A Hypothetical protein TM 21.5 67 0.0023 30.2 3.7 86 21-109 119-209 (273)
219 2bon_A Lipid kinase; DAG kinas 21.4 1.5E+02 0.0052 27.9 6.2 17 280-296 81-97 (332)
220 3l6d_A Putative oxidoreductase 21.4 2.5E+02 0.0087 25.8 7.7 93 44-148 23-123 (306)
221 1vim_A Hypothetical protein AF 21.4 3.8E+02 0.013 22.8 9.5 92 40-137 34-134 (200)
222 4ekn_B Aspartate carbamoyltran 21.3 1.7E+02 0.0057 28.1 6.5 59 97-156 97-163 (306)
223 4hv4_A UDP-N-acetylmuramate--L 21.2 1.4E+02 0.0047 30.0 6.2 61 56-123 47-109 (494)
224 3lk7_A UDP-N-acetylmuramoylala 20.5 1E+02 0.0034 30.4 4.9 123 22-156 7-150 (451)
225 2ebu_A Replication factor C su 20.2 3.2E+02 0.011 22.3 7.2 62 55-125 25-88 (112)
226 1pfk_A Phosphofructokinase; tr 20.2 73 0.0025 30.8 3.7 41 269-313 82-123 (320)
227 3ckm_A YRAM (HI1655), LPOA; pe 20.1 30 0.001 31.9 0.9 62 253-319 33-95 (327)
No 1
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=100.00 E-value=1.2e-101 Score=751.00 Aligned_cols=280 Identities=31% Similarity=0.535 Sum_probs=261.5
Q ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEc
Q 016960 24 NVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLP 103 (380)
Q Consensus 24 ~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Iy~lG~LIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~el~~g~~VIIr 103 (380)
.|+|+||+++||||||+|||++|+++++++ ++|||++|||||||+|+++|+++|+.|+++ +++|+|++||||
T Consensus 1 ~m~I~lA~~~GFC~GV~RAI~~a~~al~~~-~~~iy~~g~IVHN~~Vv~~L~~~Gv~~v~~-------~ev~~g~~VIir 72 (297)
T 3dnf_A 1 MVDIIIAEHAGFCFGVKRAVKLAEESLKES-QGKVYTLGPIIHNPQEVNRLKNLGVFPSQG-------EEFKEGDTVIIR 72 (297)
T ss_dssp CCEEEECTTCSSCHHHHHHHHHHHHHTTTC-CSCEEESSCSSSCHHHHHHHHHHTEEECCS-------SCCCTTCEEEEC
T ss_pred CeEEEEeCCCCCCccHHHHHHHHHHHHHhc-CCCEEEeCCcccCHHHHHHHHhCCCEEech-------hhCCCCCEEEEE
Confidence 499999999999999999999999999876 478999999999999999999999999973 678889999999
Q ss_pred CCCCCHHHHHHHHhcCCcEEeccCchhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccC---C-cEEEEcChhhHHH
Q 016960 104 AFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA---G-KYIIVKNMKEAEY 179 (380)
Q Consensus 104 AHGv~~~~~~~l~~~g~~viDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~gi~g~~---~-~~~vv~~~~e~~~ 179 (380)
|||+||++++.|+++|+.|||||||||+|+|+.|++++++||+|||+|+++||||+|++||+ + .++||++++|++.
T Consensus 73 AHGv~~~v~~~a~~rgl~iiDATCP~V~Kvh~~v~~~~~~Gy~iiiiG~~~HpEV~G~~g~~~~~~~~~~vV~~~ed~~~ 152 (297)
T 3dnf_A 73 SHGIPPEKEEALRKKGLKVIDATCPYVKAVHEAVCQLTREGYFVVLVGEKNHPEVIGTLGYLRACNGKGIVVETLEDIGE 152 (297)
T ss_dssp TTCCCHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHTTCEEEEESCTTCHHHHHHHHHHHHTTCCEEEESSGGGGGG
T ss_pred CCCCCHHHHHHHHHCCCEEEeCCCcchHHHHHHHHHHHhCCCEEEEEecCCCceEEeeccccccCCCcEEEEcCHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999 4 6899999999876
Q ss_pred hhhhhcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccc
Q 016960 180 VCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFIS 259 (380)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 259 (380)
+. ..+++++++||||+.++|.+|++.|+++| +++.+
T Consensus 153 l~----------------------------------~~~kv~~vsQTT~s~~~~~~iv~~L~~r~----------p~~~~ 188 (297)
T 3dnf_A 153 AL----------------------------------KHERVGIVAQTTQNEEFFKEVVGEIALWV----------KEVKV 188 (297)
T ss_dssp GG----------------------------------GCSEEEEEECTTCCHHHHHHHHHHHHHHS----------SEEEE
T ss_pred cC----------------------------------CCCcEEEEEecCCcHHHHHHHHHHHHHhC----------CCCCC
Confidence 51 12589999999999999999999998743 24678
Q ss_pred cccccHHHHHhHHHHHHhhhhcCCEEEEEccCCCchhHHHHHHHHHhCCCeEeeCCCCccCCCCcchhhhccchhhhhcc
Q 016960 260 FNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKEN 339 (380)
Q Consensus 260 ~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGG~nSSNT~kL~eia~~~~~~t~~Ie~~~dL~~~~~~~~~~~~~~~~~~~~ 339 (380)
+|||||||++||+|+++|| +++|+||||||+|||||+||+|+|++.|+++||||+++||++ +
T Consensus 189 ~~tIC~AT~~RQ~av~~la-~~~D~miVVGg~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~-----------------~ 250 (297)
T 3dnf_A 189 INTICNATSLRQESVKKLA-PEVDVMIIIGGKNSGNTRRLYYISKELNPNTYHIETAEELQP-----------------E 250 (297)
T ss_dssp ECCCCSHHHHHHHHHHHHG-GGSSEEEEESCTTCHHHHHHHHHHHHHCSSEEEESSGGGCCG-----------------G
T ss_pred CCCccHHHHHHHHHHHHHH-hhCCEEEEECCCCCchhHHHHHHHHhcCCCEEEeCChHHCCH-----------------H
Confidence 9999999999999999999 699999999999999999999999999999999999999999 9
Q ss_pred cCCCCCCEEEEEeCCCCCHHHHHHHHHHHHhhhhh
Q 016960 340 WLPKGQITIGITSGASTPDKAVEDVLKKVFEIKRE 374 (380)
Q Consensus 340 wl~~~~~~VGITAGASTP~~lI~eV~~~l~~~~~~ 374 (380)
|| .++.+||||||||||+|||++|+++|+++...
T Consensus 251 wl-~~~~~VGITAGASTP~~li~eVi~~l~~~~~~ 284 (297)
T 3dnf_A 251 WF-RGVKRVGISAGASTPDWIIEQVKSRIQEICEG 284 (297)
T ss_dssp GG-TTCSEEEEEECTTCCHHHHHHHHHHHHHC---
T ss_pred Hh-CCCCEEEEeecCCCCHHHHHHHHHHHHHhccC
Confidence 99 69999999999999999999999999987544
No 2
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=100.00 E-value=2.1e-101 Score=757.57 Aligned_cols=287 Identities=28% Similarity=0.442 Sum_probs=264.8
Q ss_pred ecceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEE
Q 016960 22 WGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVV 101 (380)
Q Consensus 22 ~g~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Iy~lG~LIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~el~~g~~VI 101 (380)
-|.|.|++|+++||||||+|||++|++++++++ ++||++|||||||+|+++|+++|+.|++ +++++|+|++||
T Consensus 10 ~~~~~i~lA~~~GFC~GV~RAI~~ae~al~~~~-~~iy~~g~IVHN~~Vv~~L~~~Gv~~ve------~l~ev~~g~~VI 82 (328)
T 3szu_A 10 HGSMQILLANPRGFCAGVDRAISIVENALAIYG-APIYVRHEVVHNRYVVDSLRERGAIFIE------QISEVPDGAILI 82 (328)
T ss_dssp ---CEEEECSSCSCCHHHHHHHHHHHHHHHHHC-SCEEEESCSSSCHHHHHHHHHTTEEEES------SGGGSCTTCEEE
T ss_pred CCceEEEEeCCCCcCccHHHHHHHHHHHHHhcC-CCEEEeCCCccCHHHHHHHHHCCCEEec------chhhCCCCCEEE
Confidence 488999999999999999999999999998763 5899999999999999999999999997 478999999999
Q ss_pred EcCCCCCHHHHHHHHhcCCcEEeccCchhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccC--C--cEEEEcChhhH
Q 016960 102 LPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA--G--KYIIVKNMKEA 177 (380)
Q Consensus 102 IrAHGv~~~~~~~l~~~g~~viDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~gi~g~~--~--~~~vv~~~~e~ 177 (380)
|||||+||++++.|+++|+.|||||||||+|+|+.|++++++||+|||+|+++||||+|++||+ + .++||++++|+
T Consensus 83 irAHGv~~~v~~~a~~rgl~iiDATCP~V~Kvh~~v~~~~~~Gy~iiiiG~~~HpEV~G~~G~~~~~~g~~~vV~~~edv 162 (328)
T 3szu_A 83 FSAHGVSQAVRNEAKSRDLTVFDATCPLVTKVHMEVARASRRGEESILIGHAGHPQVEGTMGQYSNPEGGMYLVESPDDV 162 (328)
T ss_dssp ECTTCCCHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHTCEEEEESCTTCHHHHHHHTTCCCTTSCEEEECSHHHH
T ss_pred EECCCCCHHHHHHHHHCCCEEEECCCcchHHHHHHHHHHHhCCCEEEEEccCCCceEEeecccccCCCCcEEEECCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 3 58999999999
Q ss_pred HHhhhhhcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccc
Q 016960 178 EYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHF 257 (380)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 257 (380)
+.+. ..+++++++++||||+.++|.+|++.|+++||+.. +
T Consensus 163 ~~l~--------------------------------~~~~~kv~~vsQTT~s~~~~~~iv~~L~~r~p~i~--------~ 202 (328)
T 3szu_A 163 WKLT--------------------------------VKNEEKLSFMTQTTLSVDDTSDVIDALRKRFPKIV--------G 202 (328)
T ss_dssp HHCC--------------------------------CSCTTSEEEEECTTSCHHHHHHHHHHHHHHCTTCB--------C
T ss_pred HhCC--------------------------------cCCCCeEEEEEecCCcHHHHHHHHHHHHHhCcccc--------c
Confidence 7751 11236899999999999999999999999766553 2
Q ss_pred cccccccHHHHHhHHHHHHhhhhcCCEEEEEccCCCchhHHHHHHHHHhCCCeEeeCCCCccCCCCcchhhhccchhhhh
Q 016960 258 ISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEK 337 (380)
Q Consensus 258 ~~~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGG~nSSNT~kL~eia~~~~~~t~~Ie~~~dL~~~~~~~~~~~~~~~~~~ 337 (380)
..+|||||||++||+|+++|| +++|+||||||+|||||+||+|+|++.|+++||||+++||++
T Consensus 203 ~~~ntIC~AT~~RQ~av~~lA-~~vD~miVVGg~nSSNT~rL~eia~~~g~~ty~Ie~~~el~~---------------- 265 (328)
T 3szu_A 203 PRKDDICYATTNRQEAVRALA-EQAEVVLVVGSKNSSNSNRLAELAQRMGKRAFLIDDAKDIQE---------------- 265 (328)
T ss_dssp CSSCSCCHHHHHHHHHHHHHH-HHCSEEEEECCTTCHHHHHHHHHHHHTTCEEEEESSGGGCCH----------------
T ss_pred CCCCCcCHHHHHHHHHHHHHH-HhCCEEEEeCCCCCchHHHHHHHHHHhCCCEEEeCChHHCCH----------------
Confidence 348999999999999999999 689999999999999999999999999999999999999999
Q ss_pred cccCCCCCCEEEEEeCCCCCHHHHHHHHHHHHhhhhh
Q 016960 338 ENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKRE 374 (380)
Q Consensus 338 ~~wl~~~~~~VGITAGASTP~~lI~eV~~~l~~~~~~ 374 (380)
+|| .++.+||||||||||+|||++|+++|+++.+.
T Consensus 266 -~wl-~g~~~VGITAGASTP~~lieeVi~~l~~~~~~ 300 (328)
T 3szu_A 266 -EWV-KEVKCVGVTAGASAPDILVQNVVARLQQLGGG 300 (328)
T ss_dssp -HHH-TTCSEEEEEECTTCCHHHHHHHHHHHHHTTCC
T ss_pred -HHh-CCCCEEEEeecCCCCHHHHHHHHHHHHHhCCC
Confidence 999 79999999999999999999999999987543
No 3
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=93.94 E-value=0.88 Score=44.75 Aligned_cols=172 Identities=13% Similarity=0.178 Sum_probs=126.1
Q ss_pred cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHc-----CcEEecCCccccccccccCCCEEEEcCCCCCHH
Q 016960 36 CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEM-----AVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVE 110 (380)
Q Consensus 36 C~GV~RAI~~a~~~~~~~~~~~Iy~lG~LIHN~~Vv~~L~~~-----Gv~~v~~~~~~~~~~el~~g~~VIIrAHGv~~~ 110 (380)
|.=|.++-..|.+..++ +..|.+.|.==| |.|..-+-.- ++.+|++.++.+.++.-.+....++.=--.+.+
T Consensus 108 CP~V~Kvh~~v~~~~~~--Gy~iiiiG~~~H-pEV~G~~G~~~~~~g~~~vV~~~edv~~l~~~~~~kv~~vsQTT~s~~ 184 (328)
T 3szu_A 108 CPLVTKVHMEVARASRR--GEESILIGHAGH-PQVEGTMGQYSNPEGGMYLVESPDDVWKLTVKNEEKLSFMTQTTLSVD 184 (328)
T ss_dssp CHHHHHHHHHHHHHHHH--TCEEEEESCTTC-HHHHHHHTTCCCTTSCEEEECSHHHHHHCCCSCTTSEEEEECTTSCHH
T ss_pred CcchHHHHHHHHHHHhC--CCEEEEEccCCC-ceEEeecccccCCCCcEEEECCHHHHHhCCcCCCCeEEEEEecCCcHH
Confidence 77788887888777776 468999999877 8888877543 467777644333332111134556666555554
Q ss_pred ----HHHHHHhcCCcE----EeccCchhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccC----CcEEEEcChhhHH
Q 016960 111 ----EMVTLNNKNVQI----VDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAE 178 (380)
Q Consensus 111 ----~~~~l~~~g~~v----iDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~gi~g~~----~~~~vv~~~~e~~ 178 (380)
+.+.|+++.-.+ .|+-|.-...=|..+++++++---+|++|.++-.-+.=+...| .+++.|++.+|+.
T Consensus 185 ~~~~iv~~L~~r~p~i~~~~~ntIC~AT~~RQ~av~~lA~~vD~miVVGg~nSSNT~rL~eia~~~g~~ty~Ie~~~el~ 264 (328)
T 3szu_A 185 DTSDVIDALRKRFPKIVGPRKDDICYATTNRQEAVRALAEQAEVVLVVGSKNSSNSNRLAELAQRMGKRAFLIDDAKDIQ 264 (328)
T ss_dssp HHHHHHHHHHHHCTTCBCCSSCSCCHHHHHHHHHHHHHHHHCSEEEEECCTTCHHHHHHHHHHHHTTCEEEEESSGGGCC
T ss_pred HHHHHHHHHHHhCcccccCCCCCcCHHHHHHHHHHHHHHHhCCEEEEeCCCCCchHHHHHHHHHHhCCCEEEeCChHHCC
Confidence 556778877655 4999999999999999999999999999999877666554433 3579999999874
Q ss_pred HhhhhhcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceeEEEEcCCCChHHHHHHHHHHHH
Q 016960 179 YVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEK 242 (380)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~ 242 (380)
. ++ |+ ..+.||+.+=+.-+....++++++|++
T Consensus 265 ~------------------~w---l~-----------g~~~VGITAGASTP~~lieeVi~~l~~ 296 (328)
T 3szu_A 265 E------------------EW---VK-----------EVKCVGVTAGASAPDILVQNVVARLQQ 296 (328)
T ss_dssp H------------------HH---HT-----------TCSEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred H------------------HH---hC-----------CCCEEEEeecCCCCHHHHHHHHHHHHH
Confidence 2 11 11 125899999999999999999999976
No 4
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=93.35 E-value=2.5 Score=41.04 Aligned_cols=169 Identities=17% Similarity=0.128 Sum_probs=125.8
Q ss_pred cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHc-----CcEEecCCccccccccccCCC-EEEEcCCCCCH
Q 016960 36 CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEM-----AVQNIPVEEGKKQFDVVNKGD-VVVLPAFGAAV 109 (380)
Q Consensus 36 C~GV~RAI~~a~~~~~~~~~~~Iy~lG~LIHN~~Vv~~L~~~-----Gv~~v~~~~~~~~~~el~~g~-~VIIrAHGv~~ 109 (380)
|.=|.+.-..|.+..++ +..|.+.|.==| |.|..-+-.- ++.+|++.++ ++.++..+ ..++.=--.+.
T Consensus 96 CP~V~Kvh~~v~~~~~~--Gy~iiiiG~~~H-pEV~G~~g~~~~~~~~~~vV~~~ed---~~~l~~~~kv~~vsQTT~s~ 169 (297)
T 3dnf_A 96 CPYVKAVHEAVCQLTRE--GYFVVLVGEKNH-PEVIGTLGYLRACNGKGIVVETLED---IGEALKHERVGIVAQTTQNE 169 (297)
T ss_dssp CHHHHHHHHHHHHHHHT--TCEEEEESCTTC-HHHHHHHHHHHHTTCCEEEESSGGG---GGGGGGCSEEEEEECTTCCH
T ss_pred CcchHHHHHHHHHHHhC--CCEEEEEecCCC-ceEEeeccccccCCCcEEEEcCHHH---HHhcCCCCcEEEEEecCCcH
Confidence 77788888888877775 468999999888 8888766433 5777776543 33343333 44666555555
Q ss_pred H----HHHHHHhcC--CcEEeccCchhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccC----CcEEEEcChhhHHH
Q 016960 110 E----EMVTLNNKN--VQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAEY 179 (380)
Q Consensus 110 ~----~~~~l~~~g--~~viDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~gi~g~~----~~~~vv~~~~e~~~ 179 (380)
+ +.+.|+++. +.+.|+-|.-...=|..+++++++-.-+|++|.++-.-+.=+...| .+++.|++.+|+..
T Consensus 170 ~~~~~iv~~L~~r~p~~~~~~tIC~AT~~RQ~av~~la~~~D~miVVGg~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~ 249 (297)
T 3dnf_A 170 EFFKEVVGEIALWVKEVKVINTICNATSLRQESVKKLAPEVDVMIIIGGKNSGNTRRLYYISKELNPNTYHIETAEELQP 249 (297)
T ss_dssp HHHHHHHHHHHHHSSEEEEECCCCSHHHHHHHHHHHHGGGSSEEEEESCTTCHHHHHHHHHHHHHCSSEEEESSGGGCCG
T ss_pred HHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHhhCCEEEEECCCCCchhHHHHHHHHhcCCCEEEeCChHHCCH
Confidence 4 556677775 5568999999999999999999999999999999877766554433 35899999998742
Q ss_pred hhhhhcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceeEEEEcCCCChHHHHHHHHHHHH
Q 016960 180 VCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEK 242 (380)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~ 242 (380)
- + | . ..+.||+.+=+.-+....++++++|++
T Consensus 250 ~------------------w---l--------~---~~~~VGITAGASTP~~li~eVi~~l~~ 280 (297)
T 3dnf_A 250 E------------------W---F--------R---GVKRVGISAGASTPDWIIEQVKSRIQE 280 (297)
T ss_dssp G------------------G---G--------T---TCSEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred H------------------H---h--------C---CCCEEEEeecCCCCHHHHHHHHHHHHH
Confidence 1 0 1 1 125899999999999999999999876
No 5
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=85.50 E-value=2 Score=35.64 Aligned_cols=76 Identities=22% Similarity=0.477 Sum_probs=55.9
Q ss_pred hhhhcCCEEEEEccCCCch-hHHHHHHHHHhCCCeEeeCCCCccCCCCcchhhhccchhhhhcccCC-C-CCCEEEEEeC
Q 016960 277 MVEEKVDLILVVGGWNSSN-TSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLP-K-GQITIGITSG 353 (380)
Q Consensus 277 La~~~vD~miVVGG~nSSN-T~kL~eia~~~~~~t~~Ie~~~dL~~~~~~~~~~~~~~~~~~~~wl~-~-~~~~VGITAG 353 (380)
|-++++-++|+-.+-.... .++|-.+|++.+.|.+++.|-.||-. |+- . ++..++||.+
T Consensus 41 l~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~sk~eLG~------------------a~G~~~~~~~vaI~d~ 102 (120)
T 1vq8_F 41 IERGSAELVFVAEDVQPEEIVMHIPELADEKGVPFIFVEQQDDLGH------------------AAGLEVGSAAAAVTDA 102 (120)
T ss_dssp HHHTCCSEEEEESCCSSGGGTTTHHHHHHTTCCCEEEESCHHHHHH------------------HTTCSSCCSEEEESSC
T ss_pred HHcCCceEEEEeCCCChHHHHHHHHHHHHhcCCCEEEECCHHHHHH------------------HhCCCCCeEEEEEecC
Confidence 3335677776666655443 68999999999999888999888852 341 1 4788999977
Q ss_pred CCCCHHHHHHHHHHHHhh
Q 016960 354 ASTPDKAVEDVLKKVFEI 371 (380)
Q Consensus 354 ASTP~~lI~eV~~~l~~~ 371 (380)
.-. +.+++++.+.++++
T Consensus 103 g~a-~~~~~~l~~~~~~l 119 (120)
T 1vq8_F 103 GEA-DADVEDIADKVEEL 119 (120)
T ss_dssp SSC-HHHHHHHHHHHHHT
T ss_pred chH-HHHHHHHHHHHHhc
Confidence 654 78888888888765
No 6
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=85.31 E-value=2.6 Score=34.88 Aligned_cols=79 Identities=13% Similarity=0.289 Sum_probs=56.8
Q ss_pred HHhhhhcCCEEEEEccCCCch-hHHHHHHHHHhCCCeEeeCCCCccCCCCcchhhhccchhhhhcccCC-C-CCCEEEEE
Q 016960 275 YKMVEEKVDLILVVGGWNSSN-TSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLP-K-GQITIGIT 351 (380)
Q Consensus 275 ~eLa~~~vD~miVVGG~nSSN-T~kL~eia~~~~~~t~~Ie~~~dL~~~~~~~~~~~~~~~~~~~~wl~-~-~~~~VGIT 351 (380)
+.|-++++-++|+-.+-.... .++|-.+|++.+.|.+++.|-.+|-. |+- . ++..++||
T Consensus 37 kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~sk~eLG~------------------a~G~~~~~~~vaI~ 98 (119)
T 1rlg_A 37 KAVERGLAKLVYIAEDVDPPEIVAHLPLLCEEKNVPYIYVKSKNDLGR------------------AVGIEVPCASAAII 98 (119)
T ss_dssp HHHTTTCCSEEEEESCCSCSTTTTHHHHHHHHHTCCEEEESCHHHHHH------------------HTTCSSCCSEEEEE
T ss_pred HHHHcCCCcEEEEeCCCChHHHHHHHHHHHHHcCCCEEEeCCHHHHHH------------------HhCCCCCeEEEEEe
Confidence 334345677777666655444 68999999999999888999888852 341 1 47889999
Q ss_pred eCCCCCHHHHHHHHHHHHhhh
Q 016960 352 SGASTPDKAVEDVLKKVFEIK 372 (380)
Q Consensus 352 AGASTP~~lI~eV~~~l~~~~ 372 (380)
.+... +.+.+.+.+.+++++
T Consensus 99 d~g~a-~~~~~~l~~~~~~l~ 118 (119)
T 1rlg_A 99 NEGEL-RKELGSLVEKIKGLQ 118 (119)
T ss_dssp ECGGG-HHHHHHHHHHHHTTT
T ss_pred cCchH-HHHHHHHHHHHHHhh
Confidence 87544 578888888877664
No 7
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=84.78 E-value=21 Score=31.73 Aligned_cols=138 Identities=9% Similarity=0.073 Sum_probs=76.7
Q ss_pred ceeEEEEcCC----CChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhHHHHHH-hhhhcCCEEEEEccCC
Q 016960 218 VKVGIANQTT----MLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYK-MVEEKVDLILVVGGWN 292 (380)
Q Consensus 218 ~kv~vvsQTT----~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~e-La~~~vD~miVVGG~n 292 (380)
..|+++...+ ++-.-|..+.+-+.+...+. + -++.++++- ...++|..+.+ +.+..+|.+|+++...
T Consensus 9 ~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~--~~~~~~~~~~~~~~~~~vdgiIi~~~~~ 80 (292)
T 3k4h_A 9 KTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVE-G-----YALYMSTGE--TEEEIFNGVVKMVQGRQIGGIILLYSRE 80 (292)
T ss_dssp CEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHT-T-----CEEEECCCC--SHHHHHHHHHHHHHTTCCCEEEESCCBT
T ss_pred CEEEEEecCCccccccCHHHHHHHHHHHHHHHHc-C-----CEEEEEeCC--CCHHHHHHHHHHHHcCCCCEEEEeCCCC
Confidence 5799987763 45556777877776643332 2 234444433 23344444433 4346899999987654
Q ss_pred CchhHHHHHHHHHhCCCeEeeCCCCccCC-CCcchhh-hccchhhhhcccC-CCCCCEEEEEeCCCCCHHHHHHHHHHH
Q 016960 293 SSNTSHLQEIAEDRGIPSYWIDSEKRIGP-GNKIAYK-LMHGELVEKENWL-PKGQITIGITSGASTPDKAVEDVLKKV 368 (380)
Q Consensus 293 SSNT~kL~eia~~~~~~t~~Ie~~~dL~~-~~~~~~~-~~~~~~~~~~~wl-~~~~~~VGITAGASTP~~lI~eV~~~l 368 (380)
+. .+++.+.+.+.|...+.+..+-.. ..-+... ...+.. ...+| ..|.++|++..|.....+..+....+.
T Consensus 81 ~~---~~~~~l~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~--a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~ 154 (292)
T 3k4h_A 81 ND---RIIQYLHEQNFPFVLIGKPYDRKDEITYVDNDNYTAARE--VAEYLISLGHKQIAFIGGGSDLLVTRDRLAGMS 154 (292)
T ss_dssp TC---HHHHHHHHTTCCEEEESCCSSCTTTSCEEECCHHHHHHH--HHHHHHHTTCCCEEEEESCTTBHHHHHHHHHHH
T ss_pred Ch---HHHHHHHHCCCCEEEECCCCCCCCCCCEEEECcHHHHHH--HHHHHHHCCCceEEEEeCcccchhHHHHHHHHH
Confidence 32 566677788999999987643221 1111111 011111 11222 247899999998866555544444333
No 8
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=82.18 E-value=28 Score=31.36 Aligned_cols=138 Identities=7% Similarity=0.039 Sum_probs=75.7
Q ss_pred ceeEEEEcCC----CChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhHHHH-HHhhhhcCCEEEEEccCC
Q 016960 218 VKVGIANQTT----MLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAM-YKMVEEKVDLILVVGGWN 292 (380)
Q Consensus 218 ~kv~vvsQTT----~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~-~eLa~~~vD~miVVGG~n 292 (380)
..|+++.-.. ++-.-|..+.+-+.+...+. + -++.++++- ...++|..+ ..|.+..+|.+|+.+...
T Consensus 23 ~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 94 (305)
T 3huu_A 23 LTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVR-G-----YSTRMTVSE--NSGDLYHEVKTMIQSKSVDGFILLYSLK 94 (305)
T ss_dssp CEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHH-T-----CEEEECCCS--SHHHHHHHHHHHHHTTCCSEEEESSCBT
T ss_pred CEEEEEeCCCccccccCcHHHHHHHHHHHHHHHC-C-----CEEEEEeCC--CChHHHHHHHHHHHhCCCCEEEEeCCcC
Confidence 5799887652 44556777777776643333 2 234444332 233444433 334446899999987654
Q ss_pred CchhHHHHHHHHHhCCCeEeeCCCCccCCCCcchhh-hccchhhhhcccC-CCCCCEEEEEeCCCCCHHHHHHHHHHH
Q 016960 293 SSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYK-LMHGELVEKENWL-PKGQITIGITSGASTPDKAVEDVLKKV 368 (380)
Q Consensus 293 SSNT~kL~eia~~~~~~t~~Ie~~~dL~~~~~~~~~-~~~~~~~~~~~wl-~~~~~~VGITAGASTP~~lI~eV~~~l 368 (380)
+. .+++.+++.+.|...+.+..+-+...-+... ...+.. -.++| ..|.++||+.+|.....+..+....+.
T Consensus 95 ~~---~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~g~~--a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 167 (305)
T 3huu_A 95 DD---PIEHLLNEFKVPYLIVGKSLNYENIIHIDNDNIDAAYQ--LTQYLYHLGHRHILFLQESGHYAVTEDRSVGFK 167 (305)
T ss_dssp TC---HHHHHHHHTTCCEEEESCCCSSTTCCEEECCHHHHHHH--HHHHHHHTTCCSEEEEEESSCBHHHHHHHHHHH
T ss_pred Cc---HHHHHHHHcCCCEEEECCCCcccCCcEEEeCHHHHHHH--HHHHHHHCCCCeEEEEcCCcccchhHHHHHHHH
Confidence 33 4566666889999999876532211111111 011111 01222 247899999998766555444443333
No 9
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=81.72 E-value=3.2 Score=34.50 Aligned_cols=76 Identities=17% Similarity=0.376 Sum_probs=54.2
Q ss_pred hhhhcCCEEEEEccCCCch-hHHHHHHHHHhCCCeEeeCCCCccCCCCcchhhhccchhhhhcccCC-C-CCCEEEEEeC
Q 016960 277 MVEEKVDLILVVGGWNSSN-TSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLP-K-GQITIGITSG 353 (380)
Q Consensus 277 La~~~vD~miVVGG~nSSN-T~kL~eia~~~~~~t~~Ie~~~dL~~~~~~~~~~~~~~~~~~~~wl~-~-~~~~VGITAG 353 (380)
|-++++-++|+-.+-.... .++|-.+|++.+.|.+++.|-.||- .|+- . ++..|+||-.
T Consensus 41 i~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~eLG------------------~a~G~~~~~s~vaI~d~ 102 (120)
T 1xbi_A 41 VERGIAKLVIIAEDVKPEEVVAHLPYLCEEKGIPYAYVASKQDLG------------------KAAGLEVAASSVAIINE 102 (120)
T ss_dssp HHHTCCSEEEEESCCSSGGGTTTHHHHHHHHTCCEEEESCHHHHH------------------HHTTCSSCCSEEEEEEC
T ss_pred HHcCCceEEEEcCCCChHHHHHHHHHHHHhcCCCEEEeCCHHHHH------------------HHhCCCCCEEEEEEecc
Confidence 3335677766666554443 5899999999999988899988885 3441 1 4788999987
Q ss_pred CCCCHHHHHHHHHHHHhhh
Q 016960 354 ASTPDKAVEDVLKKVFEIK 372 (380)
Q Consensus 354 ASTP~~lI~eV~~~l~~~~ 372 (380)
...-. +.++++++++++
T Consensus 103 g~a~~--l~~l~~~i~~l~ 119 (120)
T 1xbi_A 103 GDAEE--LKVLIEKVNVLK 119 (120)
T ss_dssp SCHHH--HHHHHHHHHHHT
T ss_pred chHHH--HHHHHHHHHHhh
Confidence 75433 788888887764
No 10
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=81.03 E-value=22 Score=35.30 Aligned_cols=113 Identities=13% Similarity=0.168 Sum_probs=67.9
Q ss_pred eEEEEeCCCCCcccHHHHHHHHHHHHhhC-------------------------------------CCCceEEecccccC
Q 016960 25 VKVKLAESYGFCWGVERAVQIAYEARKQF-------------------------------------PEEKIWITNEIIHN 67 (380)
Q Consensus 25 mkI~lA~~~GFC~GV~RAI~~a~~~~~~~-------------------------------------~~~~Iy~lG~LIHN 67 (380)
..|+.+...||..+...+.+.|.+++-++ ..+.|-.+|.+ |
T Consensus 129 ipVi~v~~~Gf~~~~~~G~~~a~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnilG~~--~ 206 (460)
T 2xdq_A 129 IPIVVARANGLDYAFTQGEDTVLAAMAARCPTSTAISDPEERNPIQRLLNFGKKKEEVQAQSSQYHPHPPLVLFGSL--P 206 (460)
T ss_dssp SCEEEEECCTTTCCTTHHHHHHHHHHHTTCCCCC-----------------------------CCCSCCCEEEESCC--C
T ss_pred CcEEEEecCCccccHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccCCCCcEEEEEec--C
Confidence 56888999999866666666555444221 12368899987 7
Q ss_pred HHH----HHHHHHcCcEEec--CCccccccccccCCCEEEEcCCCCCHHHHHHH-HhcCCcEEeccCchh-HHHHHHHHH
Q 016960 68 PTV----NKRLEEMAVQNIP--VEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTL-NNKNVQIVDTTCPWV-SKVWTSVEK 139 (380)
Q Consensus 68 ~~V----v~~L~~~Gv~~v~--~~~~~~~~~el~~g~~VIIrAHGv~~~~~~~l-~~~g~~viDaTCP~V-~kv~~~v~~ 139 (380)
+.. ..-|++.|+.++. .....+++..++.....+.-.+-.. ..-+.| ++.|+..+....|+- ...-+-.++
T Consensus 207 ~~~~~ei~~lL~~~Gi~v~~~~~~~~~~el~~~~~A~~ni~~~~~~~-~~A~~Le~~~giP~~~~~~P~G~~~T~~~Lr~ 285 (460)
T 2xdq_A 207 DPVVTQLTLELKKQGIKVSGWLPAKRYTELPVIDEGYYVAGVNPFLS-RTATTLIRRRKCQLITAPFPIGPDGTRTWIEQ 285 (460)
T ss_dssp HHHHHHHHHHHGGGTCCEEEEESCSSGGGCCCCCTTCEEEESSTTCH-HHHHHHHHTTCCEEECCCCSBHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHcCCeEEEEeCCCCHHHHHccccCcEEEEcCHhHH-HHHHHHHHHcCCCceecCcCccHHHHHHHHHH
Confidence 764 5567889998764 1122334444444444444333333 555556 667899999888985 334433333
Q ss_pred H
Q 016960 140 H 140 (380)
Q Consensus 140 ~ 140 (380)
+
T Consensus 286 i 286 (460)
T 2xdq_A 286 I 286 (460)
T ss_dssp H
T ss_pred H
Confidence 3
No 11
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=80.96 E-value=17 Score=32.72 Aligned_cols=137 Identities=11% Similarity=0.127 Sum_probs=75.8
Q ss_pred ceeEEEEcC---CCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhHHHHHH-hhhhcCCEEEEEccCCC
Q 016960 218 VKVGIANQT---TMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYK-MVEEKVDLILVVGGWNS 293 (380)
Q Consensus 218 ~kv~vvsQT---T~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~e-La~~~vD~miVVGG~nS 293 (380)
..|+++.-. .++-.-|..+.+-+.+...+. + -++.++++ .. .++|..+.+ |.+..+|.+|+.+...+
T Consensus 7 ~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~--~~-~~~~~~~~~~l~~~~vdGiIi~~~~~~ 77 (294)
T 3qk7_A 7 DAIALAYPSRPRVLNNSTFLEMISWIGIELGKR-G-----LDLLLIPD--EP-GEKYQSLIHLVETRRVDALIVAHTQPE 77 (294)
T ss_dssp CEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHT-T-----CEEEEEEE--CT-TCCCHHHHHHHHHTCCSEEEECSCCSS
T ss_pred ceEEEEecCCCccccChhHHHHHHHHHHHHHHC-C-----CEEEEEeC--CC-hhhHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 578888752 455667788887777643332 2 23444333 11 334444444 43458999999887654
Q ss_pred chhHHHHHHHHHhCCCeEeeCCCCccCCCCcchhh-hccchhhhhcccC-CCCCCEEEEEeCCCCCHHHHHHHHHHH
Q 016960 294 SNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYK-LMHGELVEKENWL-PKGQITIGITSGASTPDKAVEDVLKKV 368 (380)
Q Consensus 294 SNT~kL~eia~~~~~~t~~Ie~~~dL~~~~~~~~~-~~~~~~~~~~~wl-~~~~~~VGITAGASTP~~lI~eV~~~l 368 (380)
. ..++.+.+.+.|...+.+..+-+...-+... ...+.. --++| ..|.++||+.+|........+....+.
T Consensus 78 ~---~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~--a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 149 (294)
T 3qk7_A 78 D---FRLQYLQKQNFPFLALGRSHLPKPYAWFDFDNHAGASL--AVKRLLELGHQRIAFVSTDARISYVDQRLQGYV 149 (294)
T ss_dssp C---HHHHHHHHTTCCEEEESCCCCSSCCEEEEECHHHHHHH--HHHHHHHTTCCCEEEEEESSCCHHHHHHHHHHH
T ss_pred h---HHHHHHHhCCCCEEEECCCCCCCCCCEEEcChHHHHHH--HHHHHHHCCCceEEEEeCCcccchHHHHHHHHH
Confidence 3 4556666788999999875322221111100 011111 11222 248899999998866555544444443
No 12
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=80.65 E-value=23 Score=32.14 Aligned_cols=133 Identities=15% Similarity=0.114 Sum_probs=69.1
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhH-HHHHHhhhhcCCEEEEEccCCCchhH
Q 016960 219 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTS 297 (380)
Q Consensus 219 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGG~nSSNT~ 297 (380)
+|+++..++-+ -|..+.+-+.+...+. + -++.+.+. ......+| +.+..|.+..+|.+|+.+.. ++...
T Consensus 3 ~Ig~i~~~~~~--~~~~~~~gi~~~~~~~-g-----~~~~~~~~-~~~~~~~~~~~i~~l~~~~vdgiIi~~~~-~~~~~ 72 (313)
T 2h3h_A 3 TIGVIGKSVHP--YWSQVEQGVKAAGKAL-G-----VDTKFFVP-QKEDINAQLQMLESFIAEGVNGIAIAPSD-PTAVI 72 (313)
T ss_dssp EEEEECSCSSH--HHHHHHHHHHHHHHHH-T-----CEEEEECC-SSSCHHHHHHHHHHHHHTTCSEEEECCSS-TTTTH
T ss_pred EEEEEeCCCcH--HHHHHHHHHHHHHHHc-C-----CEEEEECC-CCCCHHHHHHHHHHHHHcCCCEEEEeCCC-hHHHH
Confidence 68888765433 7777877776643322 2 12332221 01223444 34555555689999987654 33334
Q ss_pred HHHHHHHHhCCCeEeeCCCCcc-CCCCcchhh-hccchhhhhcccCC---CCCCEEEEEeCCCCCHHHHHH
Q 016960 298 HLQEIAEDRGIPSYWIDSEKRI-GPGNKIAYK-LMHGELVEKENWLP---KGQITIGITSGASTPDKAVED 363 (380)
Q Consensus 298 kL~eia~~~~~~t~~Ie~~~dL-~~~~~~~~~-~~~~~~~~~~~wl~---~~~~~VGITAGASTP~~lI~e 363 (380)
..++.+.+.+.|...+.+..+- +...-+... ...+.. ..+||. .|.++|++..|...-.+..+.
T Consensus 73 ~~~~~~~~~~iPvV~~~~~~~~~~~~~~V~~d~~~~g~~--a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R 141 (313)
T 2h3h_A 73 PTIKKALEMGIPVVTLDTDSPDSGRYVYIGTDNYQAGYT--AGLIMKELLGGKGKVVIGTGSLTAMNSLQR 141 (313)
T ss_dssp HHHHHHHHTTCCEEEESSCCTTSCCSCEEECCHHHHHHH--HHHHHHHHHTSCSEEEEEESCSSCHHHHHH
T ss_pred HHHHHHHHCCCeEEEeCCCCCCcceeEEECcCHHHHHHH--HHHHHHHHcCCCCEEEEEECCCCCccHHHH
Confidence 5556666788999988875321 111111100 011111 112221 278999999987443333333
No 13
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=79.95 E-value=12 Score=33.76 Aligned_cols=124 Identities=12% Similarity=0.155 Sum_probs=69.0
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhHHHHHHhhhhcCCEEEEEccCCCchhH
Q 016960 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTS 297 (380)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGG~nSSNT~ 297 (380)
..|+++. .++-.-|..+.+-+.+...+. + -++.++++--.. +-.+.+..|.+..+|.+|+.+...+.
T Consensus 13 ~~Igvi~--~~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~~~~--~~~~~~~~l~~~~vdgiIi~~~~~~~--- 79 (289)
T 3k9c_A 13 RLLGVVF--ELQQPFHGDLVEQIYAAATRR-G-----YDVMLSAVAPSR--AEKVAVQALMRERCEAAILLGTRFDT--- 79 (289)
T ss_dssp CEEEEEE--ETTCHHHHHHHHHHHHHHHHT-T-----CEEEEEEEBTTB--CHHHHHHHHTTTTEEEEEEETCCCCH---
T ss_pred CEEEEEE--ecCCchHHHHHHHHHHHHHHC-C-----CEEEEEeCCCCH--HHHHHHHHHHhCCCCEEEEECCCCCH---
Confidence 5799998 566677888888877643332 2 223333322211 12234555555689999999876543
Q ss_pred HHHHHHHHhCCCeEeeCCCCccCCCCcchhh-hccchhhhhcccC-CCCCCEEEEEeCCCCC
Q 016960 298 HLQEIAEDRGIPSYWIDSEKRIGPGNKIAYK-LMHGELVEKENWL-PKGQITIGITSGASTP 357 (380)
Q Consensus 298 kL~eia~~~~~~t~~Ie~~~dL~~~~~~~~~-~~~~~~~~~~~wl-~~~~~~VGITAGASTP 357 (380)
..++...+ +.|...+.+..+-+...-+... ...+.. --++| ..|.++||+.+|...+
T Consensus 80 ~~~~~~~~-~iPvV~i~~~~~~~~~~~V~~D~~~~~~~--a~~~L~~~G~~~I~~i~~~~~~ 138 (289)
T 3k9c_A 80 DELGALAD-RVPALVVARASGLPGVGAVRGDDVAGITL--AVDHLTELGHRNIAHIDGADAP 138 (289)
T ss_dssp HHHHHHHT-TSCEEEESSCCSSTTSEEEEECHHHHHHH--HHHHHHHTTCCSEEEECCTTST
T ss_pred HHHHHHHc-CCCEEEEcCCCCCCCCCEEEeChHHHHHH--HHHHHHHCCCCcEEEEeCCCCc
Confidence 34444445 8999999875432221111100 011111 11222 2488999999997765
No 14
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
Probab=79.68 E-value=38 Score=31.22 Aligned_cols=117 Identities=11% Similarity=0.009 Sum_probs=70.1
Q ss_pred chhHHHHHHHcCCcceecc-eEEEEe--------------CCCCCcccHHHHHHHHHHHHhhC--------CCCceEEec
Q 016960 6 TSDIIKKLKENGFEYTWGN-VKVKLA--------------ESYGFCWGVERAVQIAYEARKQF--------PEEKIWITN 62 (380)
Q Consensus 6 ~~~~~~~~~~~~~~~~~g~-mkI~lA--------------~~~GFC~GV~RAI~~a~~~~~~~--------~~~~Iy~lG 62 (380)
.+.+.+.|+++|+....-+ +++.-. ...+.-|==.+||+...+.+.+. .+.++|+.|
T Consensus 44 ~~~l~~~L~~~G~~v~~~P~i~i~~~~~~~l~~~l~~l~~~~d~lifTS~naV~~~~~~l~~~~~~~~~~l~~~~i~aVG 123 (286)
T 3d8t_A 44 KEEFKALAEKLGFTPLLFPVQATEKVPVPEYRDQVRELAQGVDLFLATTGVGVRDLLEAGKALGLDLEGPLAKAFRLARG 123 (286)
T ss_dssp HHHHHHHHHHHTCEEEECCCEEEEEEECTTHHHHHHHHTTCCSEEEECCHHHHHHHHHHHHHTTCCCHHHHHHSEEEESS
T ss_pred hHHHHHHHHHCCCeEEEeeeEEEecCCHHHHHHHHHhhccCCCEEEEECHHHHHHHHHHHHHcCchHHHHhcCCeEEEEC
Confidence 5788999999997665543 344321 11222333344555444433221 124799998
Q ss_pred ccccCHHHHHHHHHcCcEE--ecCCccccccccccCCC-E-EEEcCCCCCHHHHHHHHhcCCcEEeccC
Q 016960 63 EIIHNPTVNKRLEEMAVQN--IPVEEGKKQFDVVNKGD-V-VVLPAFGAAVEEMVTLNNKNVQIVDTTC 127 (380)
Q Consensus 63 ~LIHN~~Vv~~L~~~Gv~~--v~~~~~~~~~~el~~g~-~-VIIrAHGv~~~~~~~l~~~g~~viDaTC 127 (380)
+ ..-+.|++.|+.. +...+...-++.+.+|. . ++.|+-+-.+...+.|+++|..|....|
T Consensus 124 ~-----~Ta~aL~~~G~~~~~~p~~~~e~L~~~l~~g~~~vLi~r~~~~~~~L~~~L~~~G~~v~~~~~ 187 (286)
T 3d8t_A 124 A-----KAARALKEAGLPPHAVGDGTSKSLLPLLPQGRGVAALQLYGKPLPLLENALAERGYRVLPLMP 187 (286)
T ss_dssp H-----HHHHHHHHTTCCCSEECSSSGGGGGGGCCCCCSEEEEECSSSCCHHHHHHHHHTTCEEEEECS
T ss_pred H-----HHHHHHHHcCCCccccccccHHHHHHHHHcCCceEEEEccCcccHHHHHHHHHCCCEEEEEEE
Confidence 4 5668999999863 32111112233344455 4 5678888888999999999998865554
No 15
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=79.64 E-value=5.3 Score=33.27 Aligned_cols=78 Identities=18% Similarity=0.395 Sum_probs=56.5
Q ss_pred hhhhcCCEEEEEccCCCch-hHHHHHHHHHhCCCeEeeCCCCccCCCCcchhhhccchhhhhcccCC-C-CCCEEEEEeC
Q 016960 277 MVEEKVDLILVVGGWNSSN-TSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLP-K-GQITIGITSG 353 (380)
Q Consensus 277 La~~~vD~miVVGG~nSSN-T~kL~eia~~~~~~t~~Ie~~~dL~~~~~~~~~~~~~~~~~~~~wl~-~-~~~~VGITAG 353 (380)
|-++++-++|+-.+-.... .++|-.+|++.+.|.+++.|-.||- .|+- . ++..|+||.+
T Consensus 40 l~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~v~sk~eLG------------------~a~G~~~~~~~vaI~d~ 101 (124)
T 2fc3_A 40 VERGLAKLVVIAEDVDPPEIVMHLPLLCDEKKIPYVYVPSKKRLG------------------EAAGIEVAAASVAIIEP 101 (124)
T ss_dssp HHTTCCSEEEEETTCSSGGGTTTHHHHHHHTTCCEEEESCHHHHH------------------HHTTCSSCCSEEEEEEC
T ss_pred HHcCCceEEEEcCCCChHHHHHHHHHHHHHcCCCEEEECCHHHHH------------------HHhCCCCCEEEEEEECc
Confidence 3335677776666655444 6899999999999988999988885 2441 1 4789999977
Q ss_pred CCCCHHHHHHHHHHHHhhhh
Q 016960 354 ASTPDKAVEDVLKKVFEIKR 373 (380)
Q Consensus 354 ASTP~~lI~eV~~~l~~~~~ 373 (380)
... +.+++++.+.++++..
T Consensus 102 g~a-~~~~~~l~~~~~~l~~ 120 (124)
T 2fc3_A 102 GDA-ETLVREIVEKVKELRA 120 (124)
T ss_dssp GGG-HHHHHHHHHHHHHHHH
T ss_pred chH-HHHHHHHHHHHHHhHh
Confidence 543 6788888888877654
No 16
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=79.16 E-value=24 Score=30.83 Aligned_cols=142 Identities=12% Similarity=0.044 Sum_probs=75.0
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhH-HHHHHhhhhc-CCEEEEEccCCCchh
Q 016960 219 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEK-VDLILVVGGWNSSNT 296 (380)
Q Consensus 219 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~eLa~~~-vD~miVVGG~nSSNT 296 (380)
+|+++.-.. +-.-|..+.+-+.+...+. + -++.++++-.....++| +.+..|.+.. +|.+|+.+. .+..+
T Consensus 2 ~Ig~i~~~~-~~~~~~~~~~gi~~~~~~~-g-----~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~-~~~~~ 73 (276)
T 3ksm_A 2 KLLLVLKGD-SNAYWRQVYLGAQKAADEA-G-----VTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPN-SAEDL 73 (276)
T ss_dssp EEEEECSCS-SSTHHHHHHHHHHHHHHHH-T-----CEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCS-STTTT
T ss_pred eEEEEeCCC-CChHHHHHHHHHHHHHHHc-C-----CEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCC-CHHHH
Confidence 577776543 3355677777776543332 2 23444432223344454 4455565567 999998765 34445
Q ss_pred HHHHHHHHHhCCCeEeeCCCCccCCC-Ccchhh-hccchh-h-hhcccCCC--CCCEEEEEeCCCCCHHHHHHHHHHHH
Q 016960 297 SHLQEIAEDRGIPSYWIDSEKRIGPG-NKIAYK-LMHGEL-V-EKENWLPK--GQITIGITSGASTPDKAVEDVLKKVF 369 (380)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~~dL~~~-~~~~~~-~~~~~~-~-~~~~wl~~--~~~~VGITAGASTP~~lI~eV~~~l~ 369 (380)
...++.+.+.+.|...+.+..+-... .-+... ...+.. . .-.+.+ . |.++||+..|...-....+....+..
T Consensus 74 ~~~~~~~~~~~ipvV~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~-~~~G~~~i~~i~~~~~~~~~~~R~~gf~~ 151 (276)
T 3ksm_A 74 TPSVAQYRARNIPVLVVDSDLAGDAHQGLVATDNYAAGQLAARALLATL-DLSKERNIALLRLRAGNASTDQREQGFLD 151 (276)
T ss_dssp HHHHHHHHHTTCCEEEESSCCSSSCSSEEEECCHHHHHHHHHHHHHHHS-CTTSCEEEEECBCCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCcEEEEecCCCCCCcceEEccCHHHHHHHHHHHHHHhc-CcCCCceEEEEEcCCCchhHHHHHHHHHH
Confidence 56667777889999999865432210 001110 011111 1 001112 2 78999999986554444444444433
No 17
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=78.74 E-value=5.6 Score=35.28 Aligned_cols=90 Identities=13% Similarity=0.067 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHc-----CcEEecCCccccccccccCCCEE-EEcCCCCCHHHH
Q 016960 39 VERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEM-----AVQNIPVEEGKKQFDVVNKGDVV-VLPAFGAAVEEM 112 (380)
Q Consensus 39 V~RAI~~a~~~~~~~~~~~Iy~lG~LIHN~~Vv~~L~~~-----Gv~~v~~~~~~~~~~el~~g~~V-IIrAHGv~~~~~ 112 (380)
+++|.++.-+++.. ++.||++|- =|-.-+.+..-.+ |+..+. ...++.++|+| ||+..|..+...
T Consensus 24 I~~AA~llaqai~~--~g~IyvfG~-Ghs~~~~~e~~~~~e~l~~~~~~~------~~~~i~~~D~vii~S~Sg~n~~~i 94 (170)
T 3jx9_A 24 LFDVVRLLAQALVG--QGKVYLDAY-GEFEGLYPMLSDGPDQMKRVTKIK------DHKTLHAVDRVLIFTPDTERSDLL 94 (170)
T ss_dssp HHHHHHHHHHHHHT--TCCEEEEEC-GGGGGGTHHHHTSTTCCTTEEECC------TTCCCCTTCEEEEEESCSCCHHHH
T ss_pred HHHHHHHHHHHHhC--CCEEEEECC-CcHHHHHHHHHcccCCccchhhhh------hcCCCCCCCEEEEEeCCCCCHHHH
Confidence 45666666666653 467999983 3544443333222 222221 22367778874 899999999766
Q ss_pred HHHHhcCCcEEeccCchhHHHHHHHHHHhhCCCeEEEEecCCCceee
Q 016960 113 VTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETV 159 (380)
Q Consensus 113 ~~l~~~g~~viDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~ 159 (380)
+.++ ++.++|-++|.|-...|-+..
T Consensus 95 e~A~----------------------~ake~G~~vIaITs~~~~~~~ 119 (170)
T 3jx9_A 95 ASLA----------------------RYDAWHTPYSIITLGDVTETL 119 (170)
T ss_dssp HHHH----------------------HHHHHTCCEEEEESSCCCTTG
T ss_pred HHHH----------------------HHHHCCCcEEEEeCcchhccc
Confidence 6553 344566666666664555443
No 18
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=78.35 E-value=31 Score=31.64 Aligned_cols=136 Identities=13% Similarity=0.172 Sum_probs=75.2
Q ss_pred ceeEEEEcCC-CChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhHH-HHHHhhhhcCCEEEEEccCCCch
Q 016960 218 VKVGIANQTT-MLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSN 295 (380)
Q Consensus 218 ~kv~vvsQTT-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-a~~eLa~~~vD~miVVGG~nSSN 295 (380)
..|+++...+ +.-.-|..+.+-+.+...+. + -++.++++ ....++|. .+..|.+..+|.+|+.+...+
T Consensus 62 ~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-- 131 (338)
T 3dbi_A 62 QTLGLVVTNTLYHGIYFSELLFHAARMAEEK-G-----RQLLLADG--KHSAEEERQAIQYLLDLRCDAIMIYPRFLS-- 131 (338)
T ss_dssp SEEEEEECTTTTSTTHHHHHHHHHHHHHHHT-T-----CEEEEEEC--TTSHHHHHHHHHHHHHTTCSEEEECCSSSC--
T ss_pred CEEEEEecCCcccChhHHHHHHHHHHHHHHC-C-----CEEEEEeC--CCChHHHHHHHHHHHhCCCCEEEEeCCCCC--
Confidence 5799887652 44556777777776643322 2 23444432 22334443 445555568999999876443
Q ss_pred hHHHHHHHHHhCCCeEeeCCCCccCCCCcchhh-hccchhhhhcccC-CCCCCEEEEEeCCCCCHHHHHHHH
Q 016960 296 TSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYK-LMHGELVEKENWL-PKGQITIGITSGASTPDKAVEDVL 365 (380)
Q Consensus 296 T~kL~eia~~~~~~t~~Ie~~~dL~~~~~~~~~-~~~~~~~~~~~wl-~~~~~~VGITAGASTP~~lI~eV~ 365 (380)
...+.+.+++.+.|...+.+..+-....-+... ...+.. .-.+| ..|.++||+.+|.....+..+...
T Consensus 132 ~~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~--a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~ 201 (338)
T 3dbi_A 132 VDEIDDIIDAHSQPIMVLNRRLRKNSSHSVWCDHKQTSFN--AVAELINAGHQEIAFLTGSMDSPTSIERLA 201 (338)
T ss_dssp HHHHHHHHHHCSSCEEEESSCCSSSGGGEECBCHHHHHHH--HHHHHHHTTCCSEEEECCCTTCHHHHHHHH
T ss_pred hHHHHHHHHcCCCCEEEEcCCCCCCCCCEEEEChHHHHHH--HHHHHHHCCCCEEEEEeCCCCCccHHHHHH
Confidence 356888888888899888764322110001100 011111 11222 248999999998655444444433
No 19
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=77.84 E-value=23 Score=32.13 Aligned_cols=138 Identities=20% Similarity=0.171 Sum_probs=75.7
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhH-HHHHHhhhhcCCEEEEEccCCCchh
Q 016960 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (380)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGG~nSSNT 296 (380)
..|+++.-+. +-.-|..+.+-+.+...+. + -++.+++ +....++| +.+..|....+|.+|+.+.. +...
T Consensus 4 ~~Igvi~~~~-~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~--~~~~~~~~~~~i~~~~~~~vdgiIi~~~~-~~~~ 73 (330)
T 3uug_A 4 GSVGIAMPTK-SSARWIDDGNNIVKQLQEA-G-----YKTDLQY--ADDDIPNQLSQIENMVTKGVKVLVIASID-GTTL 73 (330)
T ss_dssp CEEEEEECCS-SSTHHHHHHHHHHHHHHHT-T-----CEEEEEE--CTTCHHHHHHHHHHHHHHTCSEEEECCSS-GGGG
T ss_pred cEEEEEeCCC-cchHHHHHHHHHHHHHHHc-C-----CEEEEee--CCCCHHHHHHHHHHHHHcCCCEEEEEcCC-chhH
Confidence 4788887654 4456777877776643332 2 2344444 23334455 34455545689999987654 3444
Q ss_pred HHHHHHHHHhCCCeEeeCCCCcc-CCCC-cchhh-hccchhhhhcccCC--------CCCCEEEEEeCCCCCHHHHHHHH
Q 016960 297 SHLQEIAEDRGIPSYWIDSEKRI-GPGN-KIAYK-LMHGELVEKENWLP--------KGQITIGITSGASTPDKAVEDVL 365 (380)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~~dL-~~~~-~~~~~-~~~~~~~~~~~wl~--------~~~~~VGITAGASTP~~lI~eV~ 365 (380)
...++.+.+.+.|...+.+..+= +... -+... ...+.. ...||- .|.++|++.+|...-....+...
T Consensus 74 ~~~~~~~~~~giPvV~~~~~~~~~~~~~~~V~~D~~~~g~~--a~~~l~~~~~~~~~~G~~~i~~i~g~~~~~~~~~R~~ 151 (330)
T 3uug_A 74 SDVLKQAGEQGIKVIAYDRLIRNSGDVSYYATFDNFQVGVL--QATSITDKLGLKDGKGPFNIELFGGSPDDNNAFFFYD 151 (330)
T ss_dssp HHHHHHHHHTTCEEEEESSCCCSCTTCCEEEEECHHHHHHH--HHHHHHHHHTGGGTCCCEEEEECBCCTTCHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCceeEEEEeCHHHHHHH--HHHHHHHHhcccCCCCceEEEEEECCCCCchHHHHHH
Confidence 56667777889999999875422 1110 11100 011111 112221 27789999988766555444444
Q ss_pred HH
Q 016960 366 KK 367 (380)
Q Consensus 366 ~~ 367 (380)
.+
T Consensus 152 Gf 153 (330)
T 3uug_A 152 GA 153 (330)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 20
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=76.92 E-value=37 Score=29.60 Aligned_cols=139 Identities=11% Similarity=0.054 Sum_probs=74.9
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhHHH-HHHhhhhcCCEEEEEccCCCchh
Q 016960 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDA-MYKMVEEKVDLILVVGGWNSSNT 296 (380)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a-~~eLa~~~vD~miVVGG~nSSNT 296 (380)
+.|+++..+. +-.-|..+.+-+.+...+. + -++.++++ ....++|.. +..|.+..+|.+|+.+...+ +
T Consensus 3 ~~Igvi~~~~-~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~- 71 (272)
T 3o74_A 3 RTLGFILPDL-ENPSYARIAKQLEQGARAR-G-----YQLLIASS--DDQPDSERQLQQLFRARRCDALFVASCLPP-E- 71 (272)
T ss_dssp CEEEEEESCT-TCHHHHHHHHHHHHHHHHT-T-----CEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECCCCCS-S-
T ss_pred eEEEEEeCCC-cChhHHHHHHHHHHHHHHC-C-----CEEEEEeC--CCCHHHHHHHHHHHHHcCCCEEEEecCccc-c-
Confidence 4688887654 4556778887777643332 2 23333332 223345533 44444568999998876432 2
Q ss_pred HHHHHHHHHhCCCeEeeCCCCccCCCCcchhhh-ccchhhhhcccC-CCCCCEEEEEeCCCCCHHHHHHHHHHHH
Q 016960 297 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGASTPDKAVEDVLKKVF 369 (380)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~~dL~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGASTP~~lI~eV~~~l~ 369 (380)
...++.+.+.+.|...+.+..+-....-+.... ..+.. .-++| ..|+++|++.+|...-.+..+....+..
T Consensus 72 ~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~--a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~ 144 (272)
T 3o74_A 72 DDSYRELQDKGLPVIAIDRRLDPAHFCSVISDDRDASRQ--LAASLLSSAPRSIALIGARPELSVSQARAGGFDE 144 (272)
T ss_dssp CCHHHHHHHTTCCEEEESSCCCTTTCEEEEECHHHHHHH--HHHHHHTTCCSEEEEEEECTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEccCCCccccCEEEEchHHHHHH--HHHHHHHCCCcEEEEEecCCCCccHHHHHHHHHH
Confidence 445566678899999998754322111111000 11111 11223 2478999999987654444444444433
No 21
>3o3m_B Beta subunit 2-hydroxyacyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_B* 3o3o_B
Probab=76.46 E-value=1.5 Score=43.34 Aligned_cols=53 Identities=15% Similarity=0.264 Sum_probs=43.2
Q ss_pred CCCCcccHHHHHHHHHHHHhh---CC-----CCceEEecccccCHHHHHHHHHcCcEEecC
Q 016960 32 SYGFCWGVERAVQIAYEARKQ---FP-----EEKIWITNEIIHNPTVNKRLEEMAVQNIPV 84 (380)
Q Consensus 32 ~~GFC~GV~RAI~~a~~~~~~---~~-----~~~Iy~lG~LIHN~~Vv~~L~~~Gv~~v~~ 84 (380)
..+||+|.+++.+..++.+++ .+ +.+|.+.|-.+.|+.+.+.|++.|+.+|-+
T Consensus 198 ~~~~~~~~~~~~~~~~~l~~el~~~~~~~~~~~RI~~~G~~~~~~~l~~~le~~Ga~VV~~ 258 (385)
T 3o3m_B 198 KSGFFMRKEEHTELVKDLIAKLNAMPEEVCSGKKVLLTGILADSKDILDILEDNNISVVAD 258 (385)
T ss_dssp HGGGGSCHHHHHHHHHHHHHHHHHSCCCCCSSEEEEEEESCCCCHHHHHHHHHTTEEEEEE
T ss_pred HhheeCCHHHHHHHHHHHHHHHHhhhhcCCCCceEEEECCCCCcHHHHHHHHHCCCEEEEE
Confidence 457999999999988765432 11 238999999999999999999999999864
No 22
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=76.40 E-value=8.1 Score=32.92 Aligned_cols=78 Identities=19% Similarity=0.236 Sum_probs=56.0
Q ss_pred hhcCCEEEEEccCCCc-hhHHHHHHHHHhCCCeEeeCCCCccCCCCcchhhhccchhhhhcccCC--CCCCEEEEEe-CC
Q 016960 279 EEKVDLILVVGGWNSS-NTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLP--KGQITIGITS-GA 354 (380)
Q Consensus 279 ~~~vD~miVVGG~nSS-NT~kL~eia~~~~~~t~~Ie~~~dL~~~~~~~~~~~~~~~~~~~~wl~--~~~~~VGITA-GA 354 (380)
++++-++|+-++-... -..+|-.+|++.+.|.+++.+-.+|-. |.- .++..++||- |.
T Consensus 46 ~gkakLViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~eLG~------------------a~G~~~~~s~vaI~d~~~ 107 (134)
T 2ale_A 46 RGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSRVALGR------------------ACGVSRPVIAASITTNDA 107 (134)
T ss_dssp HTCEEEEEEETTCSSGGGGTHHHHHHHHHTCCEEEESCHHHHHH------------------HTTCSSCCSEEEEECCTT
T ss_pred hCCCeEEEEeCCCCHHHHHHHHHHHHHhcCCCEEEECCHHHHHH------------------HhCCCCCeEEEEEEcCCh
Confidence 3456666666665543 267899999999999999998888742 331 1245789884 66
Q ss_pred CCCHHHHHHHHHHHHhhhhh
Q 016960 355 STPDKAVEDVLKKVFEIKRE 374 (380)
Q Consensus 355 STP~~lI~eV~~~l~~~~~~ 374 (380)
|.=..+++++.+.++.+.-+
T Consensus 108 s~~~~l~~~i~~~~~~~~~~ 127 (134)
T 2ale_A 108 SAIKTQIYAVKDKIETLLIL 127 (134)
T ss_dssp CTTHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhHHH
Confidence 88888999888888776443
No 23
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=76.00 E-value=27 Score=31.55 Aligned_cols=138 Identities=17% Similarity=0.144 Sum_probs=73.9
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhH-HHHHHhhhhcCCEEEEEccCCCchh
Q 016960 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (380)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGG~nSSNT 296 (380)
..|+++.-. ++-.-|..+.+-+.+...+. + -++.++++ ....++| +.+..|.+..+|.+|+.+...+. .
T Consensus 3 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~--~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~-~ 72 (313)
T 3m9w_A 3 VKIGMAIDD-LRLERWQKDRDIFVKKAESL-G-----AKVFVQSA--NGNEETQMSQIENMINRGVDVLVIIPYNGQV-L 72 (313)
T ss_dssp CEEEEEESC-CSSSTTHHHHHHHHHHHHHT-S-----CEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEEECSSTTS-C
T ss_pred cEEEEEeCC-CCChHHHHHHHHHHHHHHHc-C-----CEEEEECC--CCCHHHHHHHHHHHHHcCCCEEEEeCCChhh-h
Confidence 368887654 33345666666665533322 2 23444433 2333444 34555555689999998765443 3
Q ss_pred HHHHHHHHHhCCCeEeeCCCCccCCC-Ccchhh-hccchhhhhcccCC--CCCCEEEEEeCCCCCHHHHHHHHHH
Q 016960 297 SHLQEIAEDRGIPSYWIDSEKRIGPG-NKIAYK-LMHGELVEKENWLP--KGQITIGITSGASTPDKAVEDVLKK 367 (380)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~~dL~~~-~~~~~~-~~~~~~~~~~~wl~--~~~~~VGITAGASTP~~lI~eV~~~ 367 (380)
..+++.+.+.+.|...+.+..+-... .-+... ...+.. ...||. .|.++|++..|.+.-.+..+....+
T Consensus 73 ~~~~~~~~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~--a~~~L~~~~G~~~i~~i~g~~~~~~~~~R~~Gf 145 (313)
T 3m9w_A 73 SNVVKEAKQEGIKVLAYDRMINDADIDFYISFDNEKVGEL--QAKALVDIVPQGNYFLMGGSPVDNNAKLFRAGQ 145 (313)
T ss_dssp HHHHHHHHTTTCEEEEESSCCTTSCCSEEEEECHHHHHHH--HHHHHHHHCSSEEEEEEESCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCeEEEECCcCCCCCceEEEecCHHHHHHH--HHHHHHHhCCCCcEEEEECCCCCccHHHHHHHH
Confidence 45666677889999999875432221 011110 011111 112331 3788999999876655544444333
No 24
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=75.40 E-value=45 Score=29.75 Aligned_cols=138 Identities=8% Similarity=-0.060 Sum_probs=73.6
Q ss_pred ceeEEEEcCCCC-hHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhHHHHHHh-hhhcCCEEEEEccCCCch
Q 016960 218 VKVGIANQTTML-KGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKM-VEEKVDLILVVGGWNSSN 295 (380)
Q Consensus 218 ~kv~vvsQTT~~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~eL-a~~~vD~miVVGG~nSSN 295 (380)
..|+++.-..-. -.-|..+.+-+.+...+. .-++.++++-- ..+.+..+.++ .+.++|.+|+.+...+.
T Consensus 9 ~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~------g~~~~~~~~~~--~~~~~~~~~~~l~~~~vdgiIi~~~~~~~- 79 (288)
T 3gv0_A 9 NVIALVLSVDEELMGFTSQMVFGITEVLSTT------QYHLVVTPHIH--AKDSMVPIRYILETGSADGVIISKIEPND- 79 (288)
T ss_dssp CEEEEECBCCCCSSCHHHHHHHHHHHHHTTS------SCEEEECCBSS--GGGTTHHHHHHHHHTCCSEEEEESCCTTC-
T ss_pred CEEEEEecCCccccHHHHHHHHHHHHHHHHc------CCEEEEecCCc--chhHHHHHHHHHHcCCccEEEEecCCCCc-
Confidence 578888764321 156778877776643222 22333333222 23444445443 23689999998754332
Q ss_pred hHHHHHHHHHhCCCeEeeCCCCccCCCCcchhhh-ccchhhhhcccC-CCCCCEEEEEeCCCCCHHHHHHHHHHH
Q 016960 296 TSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGASTPDKAVEDVLKKV 368 (380)
Q Consensus 296 T~kL~eia~~~~~~t~~Ie~~~dL~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGASTP~~lI~eV~~~l 368 (380)
..++.+.+.+.|...+.+..+-....-+...- ..+.. .-++| ..|.++||+.+|.....+..+....+.
T Consensus 80 --~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~g~~--a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~ 150 (288)
T 3gv0_A 80 --PRVRFMTERNMPFVTHGRSDMGIEHAFHDFDNEAYAYE--AVERLAQCGRKRIAVIVPPSRFSFHDHARKGFN 150 (288)
T ss_dssp --HHHHHHHHTTCCEEEESCCCSSCCCEEEEECHHHHHHH--HHHHHHHTTCCEEEEECCCTTSHHHHHHHHHHH
T ss_pred --HHHHHHhhCCCCEEEECCcCCCCCCcEEEeCcHHHHHH--HHHHHHHCCCCeEEEEcCCcccchHHHHHHHHH
Confidence 45566677899999998764322211111100 11111 11222 247899999999766555444444333
No 25
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=74.80 E-value=35 Score=30.68 Aligned_cols=117 Identities=11% Similarity=0.001 Sum_probs=69.9
Q ss_pred chhHHHHHHHcCCcceecc-eEEEEe--------------CCCCCcccHHHHHHHHHHHHhhC--------CCCceEEec
Q 016960 6 TSDIIKKLKENGFEYTWGN-VKVKLA--------------ESYGFCWGVERAVQIAYEARKQF--------PEEKIWITN 62 (380)
Q Consensus 6 ~~~~~~~~~~~~~~~~~g~-mkI~lA--------------~~~GFC~GV~RAI~~a~~~~~~~--------~~~~Iy~lG 62 (380)
.+.+.+.|++.|+....-+ +++.-. ...+.-|==.+||+...+.+.+. .+.++|+.|
T Consensus 19 ~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~l~~~~~~l~~~~d~iiftS~~aV~~~~~~l~~~~~~~~~~l~~~~i~avG 98 (261)
T 1wcw_A 19 KEAFKALAEKLGFTPLLFPVQATEKVPVPEYRDQVRALAQGVDLFLATTGVGVRDLLEAGKALGLDLEGPLAKAFRLARG 98 (261)
T ss_dssp HHHHHHHHHHTTCEEEECCCEEEEECCGGGGHHHHHHHHTCCSEEEECCHHHHHHHHHHHHHTTCCCHHHHHHSEEEESS
T ss_pred hHHHHHHHHHCCCcEEEeccEEEecCCHHHHHHHHHhhccCCCEEEEeCHHHHHHHHHHHHHhCchHHHHhcCCeEEEEC
Confidence 5788999999997655543 344321 12222333345555554443221 124799988
Q ss_pred ccccCHHHHHHHHHcCcEE--ecCCccccccccccCCC-E-EEEcCCCCCHHHHHHHHhcCCcEEeccC
Q 016960 63 EIIHNPTVNKRLEEMAVQN--IPVEEGKKQFDVVNKGD-V-VVLPAFGAAVEEMVTLNNKNVQIVDTTC 127 (380)
Q Consensus 63 ~LIHN~~Vv~~L~~~Gv~~--v~~~~~~~~~~el~~g~-~-VIIrAHGv~~~~~~~l~~~g~~viDaTC 127 (380)
+ ..-+.|++.|+.. +...+...-++.+.+|. . ++.|+-+-.+...+.|+++|..|....|
T Consensus 99 ~-----~Ta~~l~~~G~~~~~~p~~~~e~L~~~l~~g~~~vL~~r~~~~~~~L~~~L~~~G~~v~~~~~ 162 (261)
T 1wcw_A 99 A-----KAARALKEAGLPPHAVGDGTSKSLLPLLPQGRGVAALQLYGKPLPLLENALAERGYRVLPLMP 162 (261)
T ss_dssp H-----HHHHHHHHTTCCCSEECSSSHHHHGGGSCCCCEEEEEECCSSCCHHHHHHHHHTTEEEEEECS
T ss_pred H-----HHHHHHHHcCCCCCcccCccHHHHHHHHHcCCceEEEEccCcccHHHHHHHHHCCCEEEEEee
Confidence 4 5568899999863 32111111223333355 4 5778888889999999999988855544
No 26
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=74.74 E-value=43 Score=29.51 Aligned_cols=130 Identities=13% Similarity=0.129 Sum_probs=67.0
Q ss_pred ceeEEEEcCC-CChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhH-HHHHHhhhhcCCEEEEEccCCCch
Q 016960 218 VKVGIANQTT-MLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSN 295 (380)
Q Consensus 218 ~kv~vvsQTT-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGG~nSSN 295 (380)
.+|+++...+ ++-.-|..+.+-+.+...+. + -++.++++ ....++| +.+..|.+..+|.+|+.+...+.
T Consensus 20 ~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~- 90 (296)
T 3brq_A 20 QTLGLVVTNTLYHGIYFSELLFHAARMAEEK-G-----RQLLLADG--KHSAEEERQAIQYLLDLRCDAIMIYPRFLSV- 90 (296)
T ss_dssp CEEEEEECGGGCC--CHHHHHHHHHHHHHHT-T-----CEEEEECC--TTSHHHHHHHHHHHHHTTCSEEEEECSSSCH-
T ss_pred ceEEEEeCCcccCCchHHHHHHHHHHHHHHC-C-----CEEEEEeC--CCCHHHHHHHHHHHHhcCCCEEEEecCCCCh-
Confidence 5799987653 45556777777776543322 2 22333332 2233444 34555555689999998764332
Q ss_pred hHHHHHHHHH-hCCCeEeeCCCCccCCCCcchhhh-ccchhhhhcccC-CCCCCEEEEEeCCCCCHHH
Q 016960 296 TSHLQEIAED-RGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGASTPDKA 360 (380)
Q Consensus 296 T~kL~eia~~-~~~~t~~Ie~~~dL~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGASTP~~l 360 (380)
..++.+.+ .+.|...+.+..+=....-+...- ..+. ...+|| ..|.++||+..|.....+.
T Consensus 91 --~~~~~l~~~~~iPvV~~~~~~~~~~~~~V~~d~~~~~~--~a~~~l~~~G~~~I~~i~~~~~~~~~ 154 (296)
T 3brq_A 91 --DEIDDIIDAHSQPIMVLNRRLRKNSSHSVWCDHKQTSF--NAVAELINAGHQEIAFLTGSMDSPTS 154 (296)
T ss_dssp --HHHHHHHHTCSSCEEEESCCCSSSGGGEECCCHHHHHH--HHHHHHHHTTCCSEEEECCCTTCHHH
T ss_pred --HHHHHHHhcCCCCEEEEccccCCCCCCEEEEchHHHHH--HHHHHHHHCCCceEEEEcCCCCCccH
Confidence 33444556 789998887643211100011000 1111 111333 1378999999887543333
No 27
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=74.22 E-value=46 Score=29.37 Aligned_cols=124 Identities=11% Similarity=0.097 Sum_probs=70.6
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhHH-HHHHhhhhcCCEEEEEccCCCchh
Q 016960 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNT 296 (380)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-a~~eLa~~~vD~miVVGG~nSSNT 296 (380)
..|+++... ++-.-|..+.+.+.+...+. + -++.++++ ....++|. .+..|.+..+|.+|+.+...
T Consensus 8 ~~Igvi~~~-~~~~~~~~~~~gi~~~~~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~---- 74 (276)
T 3jy6_A 8 KLIAVIVAN-IDDYFSTELFKGISSILESR-G-----YIGVLFDA--NADIEREKTLLRAIGSRGFDGLILQSFSN---- 74 (276)
T ss_dssp CEEEEEESC-TTSHHHHHHHHHHHHHHHTT-T-----CEEEEEEC--TTCHHHHHHHHHHHHTTTCSEEEEESSCC----
T ss_pred cEEEEEeCC-CCchHHHHHHHHHHHHHHHC-C-----CEEEEEeC--CCCHHHHHHHHHHHHhCCCCEEEEecCCc----
Confidence 578888765 45566788887777643332 2 23333332 22234443 34445457899999998765
Q ss_pred HHHHHHHHHhCCCeEeeCCCCccCCCCcchhh-hccchhhhhcccC-CCCCCEEEEEeCCCC
Q 016960 297 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYK-LMHGELVEKENWL-PKGQITIGITSGAST 356 (380)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~~dL~~~~~~~~~-~~~~~~~~~~~wl-~~~~~~VGITAGAST 356 (380)
..+++.+.+.+.|...+.+..+-....-+... ...+.. .-++| ..|.++||+-+|...
T Consensus 75 ~~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~g~~--a~~~L~~~G~~~I~~i~~~~~ 134 (276)
T 3jy6_A 75 PQTVQEILHQQMPVVSVDREMDACPWPQVVTDNFEAAKA--ATTAFRQQGYQHVVVLTSELE 134 (276)
T ss_dssp HHHHHHHHTTSSCEEEESCCCTTCSSCEEECCHHHHHHH--HHHHHHTTTCCEEEEEEECST
T ss_pred HHHHHHHHHCCCCEEEEecccCCCCCCEEEEChHHHHHH--HHHHHHHcCCCeEEEEecCCC
Confidence 56667777889999999875432211111110 011111 11222 247899999998664
No 28
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A
Probab=73.84 E-value=12 Score=32.68 Aligned_cols=62 Identities=11% Similarity=0.087 Sum_probs=34.0
Q ss_pred Ccceecc-eEEEEe-CCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcC--cEEecC
Q 016960 18 FEYTWGN-VKVKLA-ESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMA--VQNIPV 84 (380)
Q Consensus 18 ~~~~~g~-mkI~lA-~~~GFC~GV~RAI~~a~~~~~~~~~~~Iy~lG~LIHN~~Vv~~L~~~G--v~~v~~ 84 (380)
.+.++.+ |+|.+. ..-|- ..+++.+.+.+++.....|+.+|+|+. |.+++.|++.+ +.+|..
T Consensus 18 ~~~~~~g~m~i~~iSD~Hg~----~~~l~~~l~~~~~~~~D~ii~~GDl~~-~~~~~~l~~l~~~~~~V~G 83 (190)
T 1s3l_A 18 ENLYFQGHMKIGIMSDTHDH----LPNIRKAIEIFNDENVETVIHCGDFVS-LFVIKEFENLNANIIATYG 83 (190)
T ss_dssp --------CEEEEECCCTTC----HHHHHHHHHHHHHSCCSEEEECSCCCS-THHHHHGGGCSSEEEEECC
T ss_pred cChhhcCCeEEEEEeeCCCC----HHHHHHHHHHHhhcCCCEEEECCCCCC-HHHHHHHHhcCCCEEEEeC
Confidence 4566766 887654 44442 344555444443222357999999985 67899998654 445543
No 29
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=73.40 E-value=47 Score=29.37 Aligned_cols=91 Identities=16% Similarity=0.134 Sum_probs=56.8
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhH-HHHHHhhhhcCCEEEEEccCCCchh
Q 016960 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (380)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGG~nSSNT 296 (380)
..|+++... ++-.-|..+.+-+.+...+. + -++.++++ ....++| +.+..|.+..+|.+|+.+.. ++..
T Consensus 9 ~~Ig~i~~~-~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~-~~~~ 78 (293)
T 3l6u_A 9 NIVGFTIVN-DKHEFAQRLINAFKAEAKAN-K-----YEALVATS--QNSRISEREQILEFVHLKVDAIFITTLD-DVYI 78 (293)
T ss_dssp CEEEEEESC-SCSHHHHHHHHHHHHHHHHT-T-----CEEEEEEC--SSCHHHHHHHHHHHHHTTCSEEEEECSC-TTTT
T ss_pred cEEEEEEec-CCcHHHHHHHHHHHHHHHHc-C-----CEEEEECC--CCCHHHHHHHHHHHHHcCCCEEEEecCC-hHHH
Confidence 579998865 45566777777776643332 2 23444433 2233445 44455555689999998754 3444
Q ss_pred HHHHHHHHHhCCCeEeeCCCCc
Q 016960 297 SHLQEIAEDRGIPSYWIDSEKR 318 (380)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~~d 318 (380)
..+++.+.+.+.|...+.+..+
T Consensus 79 ~~~~~~~~~~~iPvV~~~~~~~ 100 (293)
T 3l6u_A 79 GSAIEEAKKAGIPVFAIDRMIR 100 (293)
T ss_dssp HHHHHHHHHTTCCEEEESSCCC
T ss_pred HHHHHHHHHcCCCEEEecCCCC
Confidence 4666677788999999987544
No 30
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=73.15 E-value=47 Score=29.77 Aligned_cols=137 Identities=9% Similarity=0.041 Sum_probs=73.0
Q ss_pred ceeEEEEc----CCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhHHHH-HHhhhhcCCEEEEEccCC
Q 016960 218 VKVGIANQ----TTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAM-YKMVEEKVDLILVVGGWN 292 (380)
Q Consensus 218 ~kv~vvsQ----TT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~-~eLa~~~vD~miVVGG~n 292 (380)
..|+++.- ..++-.-|..+.+-+.+...+. .-++.++++- ...++|..+ ..|.+..+|.+|+++...
T Consensus 8 ~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~------g~~~~~~~~~--~~~~~~~~~~~~l~~~~vdGiI~~~~~~ 79 (295)
T 3hcw_A 8 YKIGLVLKGSEEPIRLNPFYINVLLGISETCNQH------GYGTQTTVSN--NMNDLMDEVYKMIKQRMVDAFILLYSKE 79 (295)
T ss_dssp CEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTT------TCEEEECCCC--SHHHHHHHHHHHHHTTCCSEEEESCCCT
T ss_pred cEEEEEeecCCcccccChHHHHHHHHHHHHHHHC------CCEEEEEcCC--CChHHHHHHHHHHHhCCcCEEEEcCccc
Confidence 57998862 2344456777777776643322 2234444432 233444443 344446899999987654
Q ss_pred CchhHHHHHHHHHhCCCeEeeCCCCccC--CCCcchhh-hccchhhhhcccC-CCCCCEEEEEeCCCCCHHHHHHHHHH
Q 016960 293 SSNTSHLQEIAEDRGIPSYWIDSEKRIG--PGNKIAYK-LMHGELVEKENWL-PKGQITIGITSGASTPDKAVEDVLKK 367 (380)
Q Consensus 293 SSNT~kL~eia~~~~~~t~~Ie~~~dL~--~~~~~~~~-~~~~~~~~~~~wl-~~~~~~VGITAGASTP~~lI~eV~~~ 367 (380)
+. .+++.+.+.+.|...+.+..+-. ...-+... ...+.. --++| ..|.++||+-.|.....+..+....+
T Consensus 80 ~~---~~~~~l~~~~iPvV~i~~~~~~~~~~~~~V~~D~~~~~~~--a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf 153 (295)
T 3hcw_A 80 ND---PIKQMLIDESMPFIVIGKPTSDIDHQFTHIDNDNILASEN--LTRHVIEQGVDELIFITEKGNFEVSKDRIQGF 153 (295)
T ss_dssp TC---HHHHHHHHTTCCEEEESCCCSSGGGGSCEEEECHHHHHHH--HHHHHHHHCCSEEEEEEESSCCHHHHHHHHHH
T ss_pred Ch---HHHHHHHhCCCCEEEECCCCccccCCceEEecCcHHHHHH--HHHHHHHcCCccEEEEcCCccchhHHHHHHHH
Confidence 32 45566667889999998753221 10111100 011111 11222 13899999998876554444444333
No 31
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=72.06 E-value=54 Score=29.23 Aligned_cols=129 Identities=15% Similarity=0.085 Sum_probs=68.4
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhHH----HHHHhhhhcCCEEEEEccCCC
Q 016960 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD----AMYKMVEEKVDLILVVGGWNS 293 (380)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~----a~~eLa~~~vD~miVVGG~nS 293 (380)
..|+++.-. +.-.-|..+.+-+.+...+. + -++.++++- ...++|. .+..|.+..+|.+|+.+...+
T Consensus 9 ~~Ig~i~~~-~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~ 79 (290)
T 2rgy_A 9 GIIGLFVPT-FFGSYYGTILKQTDLELRAV-H-----RHVVVATGC--GESTPREQALEAVRFLIGRDCDGVVVISHDLH 79 (290)
T ss_dssp CEEEEECSC-SCSHHHHHHHHHHHHHHHHT-T-----CEEEEECCC--SSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC
T ss_pred CeEEEEeCC-CCCchHHHHHHHHHHHHHHC-C-----CEEEEEeCC--CchhhhhhHHHHHHHHHhcCccEEEEecCCCC
Confidence 478888754 34456777777776543322 2 123333221 1123333 455555568999999876543
Q ss_pred chhHHHHHHHHHhCCCeEeeCCCCccCCCCcchhhh----ccchhhhhcccC-CCCCCEEEEEeCCCCCHHHHHH
Q 016960 294 SNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL----MHGELVEKENWL-PKGQITIGITSGASTPDKAVED 363 (380)
Q Consensus 294 SNT~kL~eia~~~~~~t~~Ie~~~dL~~~~~~~~~~----~~~~~~~~~~wl-~~~~~~VGITAGASTP~~lI~e 363 (380)
...++.+++.+.|...+.+..+-. .+.+-. ..+.. .-+|| ..|.++||+-.|...-.+..+.
T Consensus 80 ---~~~~~~l~~~~iPvV~~~~~~~~~---~~~~V~~D~~~~g~~--a~~~L~~~G~~~I~~i~~~~~~~~~~~R 146 (290)
T 2rgy_A 80 ---DEDLDELHRMHPKMVFLNRAFDAL---PDASFCPDHRRGGEL--AAATLIEHGHRKLAVISGPFTASDNVER 146 (290)
T ss_dssp ---HHHHHHHHHHCSSEEEESSCCTTS---GGGEECCCHHHHHHH--HHHHHHHTTCCSEEEEESCTTCHHHHHH
T ss_pred ---HHHHHHHhhcCCCEEEEccccCCC---CCCEEEeCcHHHHHH--HHHHHHHCCCceEEEEeCCCCCccHHHH
Confidence 234455556789999887643211 111110 11111 11233 1378999999987544343333
No 32
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=71.89 E-value=29 Score=30.93 Aligned_cols=133 Identities=18% Similarity=0.176 Sum_probs=72.9
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhHH-HHHHhhhhcCCEEEEEccCCCchh
Q 016960 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNT 296 (380)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-a~~eLa~~~vD~miVVGG~nSSNT 296 (380)
..|+++.-. ++-.-|..+.+-+.+...+. + -++.++++- ...++|. .+..|.+..+|.+|+.+... .
T Consensus 9 ~~Igvv~~~-~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~---~ 76 (291)
T 3egc_A 9 NVVGLIVSD-IENVFFAEVASGVESEARHK-G-----YSVLLANTA--EDIVREREAVGQFFERRVDGLILAPSEG---E 76 (291)
T ss_dssp CEEEEEESC-TTSHHHHHHHHHHHHHHHHT-T-----CEEEEEECT--TCHHHHHHHHHHHHHTTCSEEEECCCSS---C
T ss_pred cEEEEEECC-CcchHHHHHHHHHHHHHHHC-C-----CEEEEEeCC--CCHHHHHHHHHHHHHCCCCEEEEeCCCC---C
Confidence 578988765 44556777777776643332 2 234443322 2234443 34444456899999987654 3
Q ss_pred HHHHHHHHHhCCCeEeeCCCCccCCCCcchhhh-ccchhhhhcccC-CCCCCEEEEEeCCCCCHHHHHHH
Q 016960 297 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGASTPDKAVEDV 364 (380)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~~dL~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGASTP~~lI~eV 364 (380)
..+++.+.+.+.|...+.+..+-+...-+...- ..+.. ..++| ..|.++|++-.|.+.-.+..+..
T Consensus 77 ~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~--a~~~L~~~G~~~i~~i~~~~~~~~~~~R~ 144 (291)
T 3egc_A 77 HDYLRTELPKTFPIVAVNRELRIPGCGAVLSENVRGART--AVEYLIARGHTRIGAIVGSAGLMTSRERL 144 (291)
T ss_dssp CHHHHHSSCTTSCEEEESSCCCCTTCEEEEECHHHHHHH--HHHHHHHTTCCSEEEECSCTTSHHHHHHH
T ss_pred hHHHHHhhccCCCEEEEecccCCCCCCEEEECcHHHHHH--HHHHHHHcCCCEEEEEeCCCCCcCHHHHH
Confidence 345566667889999998765422211111100 11111 11222 24789999998876544443333
No 33
>2k1g_A Lipoprotein SPR; solution structure, bacterial lipoprotein, cysteine PEPT NPLC/P60 family, construct optimized, membrane, palmitate; NMR {Escherichia coli}
Probab=70.81 E-value=4.9 Score=34.32 Aligned_cols=76 Identities=24% Similarity=0.456 Sum_probs=50.9
Q ss_pred CCcccchhHHHHHHHc-CCcceecceEEEEeCCCCC-cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcC
Q 016960 1 MNQEYTSDIIKKLKEN-GFEYTWGNVKVKLAESYGF-CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMA 78 (380)
Q Consensus 1 ~~~~~~~~~~~~~~~~-~~~~~~g~mkI~lA~~~GF-C~GV~RAI~~a~~~~~~~~~~~Iy~lG~LIHN~~Vv~~L~~~G 78 (380)
|+.+-++.|++..++. |.|+.||+. .+.|| |.|.-+ .+++.. . + |--|..-....+.|
T Consensus 1 mn~~~~~~ii~~a~~~lG~PY~wGG~-----~~~G~DCSGlv~---~vy~~~--~-G---------i~lPr~s~~q~~~g 60 (135)
T 2k1g_A 1 MNVDVKSRIMDQYADWKGVRYRLGGS-----TKKGIDCSGFVQ---RTFREQ--F-G---------LELPRSTYEQQEMG 60 (135)
T ss_dssp CCCCHHHHHHHHHHHHTTCCCCSSCC-----BTTBCCHHHHHH---HHHHHT--T-C---------CCCCSSHHHHGGGS
T ss_pred CCHhHHHHHHHHHHHHCCCCccCCCc-----CCCCceeHHHHH---HHHHHc--C-C---------CCCCCCHHHHhhCC
Confidence 6788899999988875 899999984 47798 999643 343321 1 1 22244455556666
Q ss_pred cEEecCCccccccccccCCCEEEEcC
Q 016960 79 VQNIPVEEGKKQFDVVNKGDVVVLPA 104 (380)
Q Consensus 79 v~~v~~~~~~~~~~el~~g~~VIIrA 104 (380)
-. |+ .+++.+||.|.++.
T Consensus 61 ~~-V~-------~~~l~pGDLvFf~~ 78 (135)
T 2k1g_A 61 KS-VS-------RSNLRTGDLVLFRA 78 (135)
T ss_dssp EE-EC-------GGGCCTTEEEEEEE
T ss_pred cE-ec-------HHHccCCcEEEECC
Confidence 44 32 46778899888864
No 34
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=70.65 E-value=16 Score=33.61 Aligned_cols=94 Identities=13% Similarity=0.152 Sum_probs=58.1
Q ss_pred eeEEEEcCC-CChHHHHHHHHHHHHHHhhhcc-cccccccccccccccHHHHHhHHHHHHhhh-hcCCEEEEEccCCCch
Q 016960 219 KVGIANQTT-MLKGETEEIGKLVEKTMMRKFG-VENVNEHFISFNTICDATQERQDAMYKMVE-EKVDLILVVGGWNSSN 295 (380)
Q Consensus 219 kv~vvsQTT-~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~~~nTIC~AT~~RQ~a~~eLa~-~~vD~miVVGG~nSSN 295 (380)
+|+++.-.| -.......+.+-++..+.+.-+ .....-++.+.|+-|......+ ++.+|.. ..||+ |||...|+.
T Consensus 8 ~IG~~~p~sg~~~~~g~~~~~g~~~a~~~~~~~i~G~~i~l~~~D~~~~~~~~~~-~~~~li~~~~v~~--iiG~~~s~~ 84 (368)
T 4eyg_A 8 KVGLIVPMTGGQASTGKQIDNAIKLYIKKHGDTVAGKKIEVILKDDAAIPDNTKR-LAQELIVNDKVNV--IAGFGITPA 84 (368)
T ss_dssp EEEEEECSSSTTHHHHHHHHHHHHHHHHHHCSEETTEEEEEEEEECTTCHHHHHH-HHHHHHHTSCCSE--EEECSSHHH
T ss_pred EEEEEeCCcCcchhccHHHHHHHHHHHHHcCCCCCCeEEEEEEeCCCCCHHHHHH-HHHHHHhcCCcEE--EECCCccHH
Confidence 788776544 3333445555555443332210 0001125678899887765544 4455653 46766 558889999
Q ss_pred hHHHHHHHHHhCCCeEeeCC
Q 016960 296 TSHLQEIAEDRGIPSYWIDS 315 (380)
Q Consensus 296 T~kL~eia~~~~~~t~~Ie~ 315 (380)
+..+.+++++.+.|.+....
T Consensus 85 ~~~~~~~~~~~~ip~i~~~~ 104 (368)
T 4eyg_A 85 ALAAAPLATQAKVPEIVMAA 104 (368)
T ss_dssp HHHHHHHHHHHTCCEEESSC
T ss_pred HHHHHHHHHhCCceEEeccC
Confidence 99999999999999876654
No 35
>3aek_A Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_A* 3aes_A* 3aer_A* 3aet_A 3aeu_A
Probab=70.61 E-value=28 Score=34.59 Aligned_cols=103 Identities=11% Similarity=0.135 Sum_probs=62.8
Q ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHHhhC----CCCceEEecccccC--HHHHHHHHHcCcEEecCCcccccccccc--
Q 016960 24 NVKVKLAESYGFCWGVERAVQIAYEARKQF----PEEKIWITNEIIHN--PTVNKRLEEMAVQNIPVEEGKKQFDVVN-- 95 (380)
Q Consensus 24 ~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~----~~~~Iy~lG~LIHN--~~Vv~~L~~~Gv~~v~~~~~~~~~~el~-- 95 (380)
+..|+-+...||-.--....+.|.+++-+. +...|-++|++--+ .++..-|++.|+.++.-.++. .++++.
T Consensus 148 ~~pVi~v~t~gf~g~~~~G~~~a~~al~~~~~~~~~~~VNilG~~~~~~~~eik~lL~~~Gi~v~~~~~~~-~~~ei~~~ 226 (437)
T 3aek_A 148 HVRVYSYTGSGLDTTFTQGEDTCLAAMVPTLDTTEAAELIVVGALPDVVEDQCLSLLTQLGVGPVRMLPAR-RSDIEPAV 226 (437)
T ss_dssp TCEEEEEECCTTTCCTTHHHHHHHHHHGGGSCBCCCCCEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCS-SGGGCCCB
T ss_pred CCeEEEeECCCCCCcHHHHHHHHHHHHHHHhcccCCCcEEEEeCCChhHHHHHHHHHHHcCCceEEEcCCC-CHHHHHhh
Confidence 467888888888643444445554444321 23579999996433 245566788999876432222 455554
Q ss_pred -CCC-EEEEcCCCCCHHHHHHHHhcCCcEEeccCch
Q 016960 96 -KGD-VVVLPAFGAAVEEMVTLNNKNVQIVDTTCPW 129 (380)
Q Consensus 96 -~g~-~VIIrAHGv~~~~~~~l~~~g~~viDaTCP~ 129 (380)
... ++++...+ ...-+.|++.|+..+..+.|+
T Consensus 227 ~~A~~niv~~~~~--~~~A~~Le~~GiP~i~~~~P~ 260 (437)
T 3aek_A 227 GPNTRFILAQPFL--GETTGALERRGAKRIAAPFPF 260 (437)
T ss_dssp CTTCEEEESSTTC--HHHHHHHHHTTCEECCCCCSC
T ss_pred hcCcEEEEECccH--HHHHHHHHHcCCCeEecCCCc
Confidence 333 34444433 445555588899999998887
No 36
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=69.84 E-value=58 Score=28.68 Aligned_cols=128 Identities=13% Similarity=0.120 Sum_probs=71.0
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhHH-HHHHhhhhcCCEEEEEccCCCc--
Q 016960 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSS-- 294 (380)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-a~~eLa~~~vD~miVVGG~nSS-- 294 (380)
..|+++... ++-.-|..+.+-+.+...+. + -++.++++ ....++|. .+..|.+..+|.+|+.+...+.
T Consensus 16 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~ 86 (298)
T 3tb6_A 16 KTIGVLTTY-ISDYIFPSIIRGIESYLSEQ-G-----YSMLLTST--NNNPDNERRGLENLLSQHIDGLIVEPTKSALQT 86 (298)
T ss_dssp CEEEEEESC-SSSTTHHHHHHHHHHHHHHT-T-----CEEEEEEC--TTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCC
T ss_pred ceEEEEeCC-CCchHHHHHHHHHHHHHHHC-C-----CEEEEEeC--CCChHHHHHHHHHHHHCCCCEEEEecccccccC
Confidence 578888765 34456777777776643332 2 23333332 23344553 3444545789999998865542
Q ss_pred hhHHHHHHHHHhCCCeEeeCCCCccCCCCcchhh-hccchhhhhcccC-CCCCCEEEEEeCCCC
Q 016960 295 NTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYK-LMHGELVEKENWL-PKGQITIGITSGAST 356 (380)
Q Consensus 295 NT~kL~eia~~~~~~t~~Ie~~~dL~~~~~~~~~-~~~~~~~~~~~wl-~~~~~~VGITAGAST 356 (380)
....+++.+.+.+.|...+.+..+-....-+... ...+.. --++| ..|.++||+..|...
T Consensus 87 ~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~--a~~~L~~~G~~~i~~i~~~~~ 148 (298)
T 3tb6_A 87 PNIGYYLNLEKNGIPFAMINASYAELAAPSFTLDDVKGGMM--AAEHLLSLGHTHMMGIFKADD 148 (298)
T ss_dssp TTHHHHHHHHHTTCCEEEESSCCTTCSSCEEEECHHHHHHH--HHHHHHHTTCCSEEEEEESSS
T ss_pred CcHHHHHHHHhcCCCEEEEecCcCCCCCCEEEeCcHHHHHH--HHHHHHHCCCCcEEEEcCCCC
Confidence 3445666677889999999875332211111100 011111 11223 147899999888655
No 37
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=69.49 E-value=38 Score=30.17 Aligned_cols=133 Identities=8% Similarity=-0.045 Sum_probs=67.8
Q ss_pred ceeEEEEcCCC---ChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhH-HHHHHhhhhcCCEEEEEccCCC
Q 016960 218 VKVGIANQTTM---LKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNS 293 (380)
Q Consensus 218 ~kv~vvsQTT~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGG~nS 293 (380)
..|+++.-..+ .-.-|..+.+-+.+...+. + -++.++++ ....++| +.+..|.+..+|.+|+.+...+
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~ 76 (287)
T 3bbl_A 5 FMIGYSWTQTEPGQVNHILDQFLSSMVREAGAV-N-----YFVLPFPF--SEDRSQIDIYRDLIRSGNVDGFVLSSINYN 76 (287)
T ss_dssp CEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHT-T-----CEEEECCC--CSSTTCCHHHHHHHHTTCCSEEEECSCCTT
T ss_pred eEEEEEecccccccCChhHHHHHHHHHHHHHHc-C-----CEEEEEeC--CCchHHHHHHHHHHHcCCCCEEEEeecCCC
Confidence 47888865413 3445677777666543322 2 22333332 1122333 3445555568999999875443
Q ss_pred chhHHHHHHHHHhCCCeEeeCCCCccCCCCcchhhh-ccchhhhhcccCC-CCCCEEEEEeCCCCCHHHHHH
Q 016960 294 SNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWLP-KGQITIGITSGASTPDKAVED 363 (380)
Q Consensus 294 SNT~kL~eia~~~~~~t~~Ie~~~dL~~~~~~~~~~-~~~~~~~~~~wl~-~~~~~VGITAGASTP~~lI~e 363 (380)
. ..++.+.+.+.|...+.+..+-+...-+...- ..+.. -.+||. .|.++||+-.|.....+..+.
T Consensus 77 ~---~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~--a~~~L~~~G~~~I~~i~~~~~~~~~~~R 143 (287)
T 3bbl_A 77 D---PRVQFLLKQKFPFVAFGRSNPDWDFAWVDIDGTAGTRQ--AVEYLIGRGHRRIAILAWPEDSRVGNDR 143 (287)
T ss_dssp C---HHHHHHHHTTCCEEEESCCSTTCCCCEEEECHHHHHHH--HHHHHHHHTCCCEEEEECCTTCHHHHHH
T ss_pred c---HHHHHHHhcCCCEEEECCcCCCCCCCEEEeccHHHHHH--HHHHHHHCCCCeEEEEeCCcccccHHHH
Confidence 2 34455567889999998743211111111100 11111 112331 378999999887554443333
No 38
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=68.44 E-value=23 Score=32.76 Aligned_cols=91 Identities=10% Similarity=0.172 Sum_probs=58.6
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhH-HHHHHhhh--hcCCEEEEEccCCCc
Q 016960 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVE--EKVDLILVVGGWNSS 294 (380)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~eLa~--~~vD~miVVGG~nSS 294 (380)
.+|+++.-...+-.-|..+.+-+++...+. + -++.++++ .....+| +.+..+.. ..+|.+|+++ .++
T Consensus 4 ~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~-g-----~~~~~~~~--~~~~~~~~~~i~~~i~~~~~vDgiIi~~--~~~ 73 (350)
T 3h75_A 4 TSVVFLNPGNSTETFWVSYSQFMQAAARDL-G-----LDLRILYA--ERDPQNTLQQARELFQGRDKPDYLMLVN--EQY 73 (350)
T ss_dssp CEEEEEECSCTTCHHHHHHHHHHHHHHHHH-T-----CEEEEEEC--TTCHHHHHHHHHHHHHSSSCCSEEEEEC--CSS
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHHc-C-----CeEEEEEC--CCCHHHHHHHHHHHHhcCCCCCEEEEeC--chh
Confidence 479999877655467788888777654333 2 23434332 2233444 34555554 3899999986 334
Q ss_pred hhHHHHHHHHHhCCCeEeeCCCCc
Q 016960 295 NTSHLQEIAEDRGIPSYWIDSEKR 318 (380)
Q Consensus 295 NT~kL~eia~~~~~~t~~Ie~~~d 318 (380)
....+++.+.+.+.|.+.+.+..+
T Consensus 74 ~~~~~~~~~~~~giPvV~~~~~~~ 97 (350)
T 3h75_A 74 VAPQILRLSQGSGIKLFIVNSPLT 97 (350)
T ss_dssp HHHHHHHHHTTSCCEEEEEESCCC
T ss_pred hHHHHHHHHHhCCCcEEEEcCCCC
Confidence 556777788788999999987543
No 39
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=67.23 E-value=70 Score=28.58 Aligned_cols=142 Identities=8% Similarity=-0.116 Sum_probs=77.7
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhH-HHHHHhhhhcCCEEEEEccCCCchh
Q 016960 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (380)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGG~nSSNT 296 (380)
.+|+++.-.. +-.-|..+.+-+++...+. + -++.+.++-=+...++| +.+..|....+|.+|+.+. ++...
T Consensus 4 ~~Igvi~~~~-~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~-~~~~~ 75 (297)
T 3rot_A 4 DKYYLITHGS-QDPYWTSLFQGAKKAAEEL-K-----VDLQILAPPGANDVPKQVQFIESALATYPSGIATTIP-SDTAF 75 (297)
T ss_dssp CEEEEECSCC-CSHHHHHHHHHHHHHHHHH-T-----CEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCC-CSSTT
T ss_pred EEEEEEecCC-CCchHHHHHHHHHHHHHHh-C-----cEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCC-CHHHH
Confidence 3788887765 5566777877776643332 2 23443332200133344 3445555578999887654 44444
Q ss_pred HHHHHHHHHhCCCeEeeCCCCcc----CCCCcchhh-hccchhhhhcccCC-CC--CCEEEEEeCCCCCHHHHHHHHHHH
Q 016960 297 SHLQEIAEDRGIPSYWIDSEKRI----GPGNKIAYK-LMHGELVEKENWLP-KG--QITIGITSGASTPDKAVEDVLKKV 368 (380)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~~dL----~~~~~~~~~-~~~~~~~~~~~wl~-~~--~~~VGITAGASTP~~lI~eV~~~l 368 (380)
..+++.+.+.+.|...+.+..+- ....-+... ...+.. ...||. .+ .++|++..|.+.-....+....+.
T Consensus 76 ~~~~~~~~~~giPvV~~~~~~~~~~~~~~~~~V~~D~~~~g~~--a~~~l~~~g~~~~~i~~i~g~~~~~~~~~R~~Gf~ 153 (297)
T 3rot_A 76 SKSLQRANKLNIPVIAVDTRPKDKTKNPYLVFLGSDNLLAGKK--LGEKALELTPSAKRALVLNPQPGHIGLEKRAYGIK 153 (297)
T ss_dssp HHHHHHHHHHTCCEEEESCCCSCTTTSCCSCEEECCHHHHHHH--HHHHHHHHCTTCCEEEEEESCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEEcCCCccccccCcceEEccChHHHHHH--HHHHHHHhcCCCceEEEEeCCCCcHHHHHHHHHHH
Confidence 66677777889999999876543 111111100 011111 112221 24 889999998876665555444443
Q ss_pred H
Q 016960 369 F 369 (380)
Q Consensus 369 ~ 369 (380)
.
T Consensus 154 ~ 154 (297)
T 3rot_A 154 T 154 (297)
T ss_dssp H
T ss_pred H
Confidence 3
No 40
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}
Probab=67.12 E-value=14 Score=30.81 Aligned_cols=76 Identities=21% Similarity=0.340 Sum_probs=54.1
Q ss_pred hhhhcCCEEEEEccCCCch-hHHHHHHHHHhCCCeEeeCCCCccCCCCcchhhhccchhhhhcccCC--CCCCEEEEEeC
Q 016960 277 MVEEKVDLILVVGGWNSSN-TSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLP--KGQITIGITSG 353 (380)
Q Consensus 277 La~~~vD~miVVGG~nSSN-T~kL~eia~~~~~~t~~Ie~~~dL~~~~~~~~~~~~~~~~~~~~wl~--~~~~~VGITAG 353 (380)
|-++++-++|+-.+-.... ..+|-.+|++.+.|.+++.|-.+|-. |+- .+...++|+-.
T Consensus 43 i~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~eLG~------------------a~Gk~~~vs~vaI~d~ 104 (122)
T 3o85_A 43 VNRGKAELVIIAADADPIEIVLHLPLACEDKGVPYVFIGSKNALGR------------------ACNVSVPTIVASIGKH 104 (122)
T ss_dssp HHTTCCSEEEEETTCSSGGGGTTHHHHHHTTTCCEEEESCHHHHHH------------------HTTCSSCCSEEEECCC
T ss_pred HHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECCHHHHHH------------------HhCCCCCEEEEEEEcc
Confidence 3335676666665554433 48999999999999888999888853 331 14577999987
Q ss_pred CCCCHHHHHHHHHHHHhh
Q 016960 354 ASTPDKAVEDVLKKVFEI 371 (380)
Q Consensus 354 ASTP~~lI~eV~~~l~~~ 371 (380)
.. -...++++...++++
T Consensus 105 ~~-~~~~~~~~~~~i~~~ 121 (122)
T 3o85_A 105 DA-LGNVVAEIVGKVEAL 121 (122)
T ss_dssp TT-THHHHHHHHHHHHTT
T ss_pred cc-hHHHHHHHHHHHHhh
Confidence 77 677888888777654
No 41
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=66.22 E-value=24 Score=31.48 Aligned_cols=121 Identities=14% Similarity=0.193 Sum_probs=74.8
Q ss_pred ccchhHHHHHHHcCCcceecc-eEEEE-----------eCCCCCcccHHHHHHHHHHHHh-hCCCCceEEecccccCHHH
Q 016960 4 EYTSDIIKKLKENGFEYTWGN-VKVKL-----------AESYGFCWGVERAVQIAYEARK-QFPEEKIWITNEIIHNPTV 70 (380)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~g~-mkI~l-----------A~~~GFC~GV~RAI~~a~~~~~-~~~~~~Iy~lG~LIHN~~V 70 (380)
+..+++.+.|++.|+....-+ +++.- .......|==.+||+...+.+. ..++.++|+.|+ ..
T Consensus 11 ~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~l~~~d~viftS~~aV~~~~~~l~~~l~~~~~~aVG~-----~T 85 (240)
T 3mw8_A 11 GKNAAMASALDALAIPYLVEPLLSVEAAAVTQAQLDELSRADILIFISTSAVSFATPWLKDQWPKATYYAVGD-----AT 85 (240)
T ss_dssp TSCHHHHHHHHHHTCCEEECCSCEEEECCCCHHHHHHHTTCSEEEECSHHHHHHHHHHHTTCCCSSEEEESSH-----HH
T ss_pred HHhHHHHHHHHHCCCcEEEeCcEEEeccccHHHHHHHhcCCCEEEEECHHHHHHHHHHHHhhCcCCeEEEECH-----HH
Confidence 345788999999986554432 34332 1233444545666666665553 244468999985 55
Q ss_pred HHHHHHcCcEEe--cCCc-cccccc------cccCCCEEEEcCCCCCHHHHHHHHhcCCcE-----EeccCch
Q 016960 71 NKRLEEMAVQNI--PVEE-GKKQFD------VVNKGDVVVLPAFGAAVEEMVTLNNKNVQI-----VDTTCPW 129 (380)
Q Consensus 71 v~~L~~~Gv~~v--~~~~-~~~~~~------el~~g~~VIIrAHGv~~~~~~~l~~~g~~v-----iDaTCP~ 129 (380)
-+.|++.|+..+ .+.. ..+.|- .++...++++|+-+-.+...+.|+++|..| |++.+|-
T Consensus 86 a~~L~~~G~~~~~~p~~~~~~e~L~~~~~~~~~~g~~vL~~rg~~~r~~l~~~L~~~G~~v~~~~~Y~~~~~~ 158 (240)
T 3mw8_A 86 ADALALQGITAERSPADSQATEGLLTLPSLEQVSGKQIVIVRGKGGREAMADGLRLRGANVSYLEVYQRACPP 158 (240)
T ss_dssp HHHHHHTTCCCEECC---CCGGGGGGCGGGTCCTTCEEEEEEESSSCCHHHHHHHHTTCEEEEEEEEEEECCC
T ss_pred HHHHHHcCCCCccCCCCcCCHHHHHHhhhhccCCCCEEEEEeCCCcHHHHHHHHHHCCCEEEEEEEEEeeCCC
Confidence 689999999643 2210 111121 222334578999998999999999999776 5555553
No 42
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=66.10 E-value=57 Score=29.35 Aligned_cols=89 Identities=15% Similarity=0.196 Sum_probs=48.5
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhHHHHHHhhhhcCCEEEEEccCCCchhH
Q 016960 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTS 297 (380)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGG~nSSNT~ 297 (380)
..||++ |. ++-.-|.++++-+.+.+.+. +-+...-.+.+.|+-.+...+ +..++.|.+.++|++|++|. +.+.
T Consensus 3 ~~Igvi-~~-~~~p~~~~i~~gi~~~l~~~-gy~g~~v~l~~~~~~~~~~~~-~~~~~~l~~~~vDgII~~~~---~~~~ 75 (295)
T 3lft_A 3 AKIGVL-QF-VSHPSLDLIYKGIQDGLAEE-GYKDDQVKIDFMNSEGDQSKV-ATMSKQLVANGNDLVVGIAT---PAAQ 75 (295)
T ss_dssp EEEEEE-EC-SCCHHHHHHHHHHHHHHHHT-TCCGGGEEEEEEECTTCHHHH-HHHHHHHTTSSCSEEEEESH---HHHH
T ss_pred eEEEEE-Ec-cCChhHHHHHHHHHHHHHHc-CCCCCceEEEEecCCCCHHHH-HHHHHHHHhcCCCEEEECCc---HHHH
Confidence 479988 64 56667888888777654433 210000012223443333322 23455565578999999873 2233
Q ss_pred HHHHHHHHhCCCeEeeCC
Q 016960 298 HLQEIAEDRGIPSYWIDS 315 (380)
Q Consensus 298 kL~eia~~~~~~t~~Ie~ 315 (380)
.+.+ ...+.|..++..
T Consensus 76 ~~~~--~~~~iPvV~~~~ 91 (295)
T 3lft_A 76 GLAS--ATKDLPVIMAAI 91 (295)
T ss_dssp HHHH--HCSSSCEEEESC
T ss_pred HHHH--cCCCCCEEEEec
Confidence 3332 246788888864
No 43
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=66.01 E-value=67 Score=29.72 Aligned_cols=125 Identities=12% Similarity=0.090 Sum_probs=67.8
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhH-HHHHHhhhhcCCEEEEEccCCCchh
Q 016960 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (380)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGG~nSSNT 296 (380)
..|+++.-. ++-..|..+++-+.+...+. + -++.++++- ...++| +.+..|....+|.+|+.+...+
T Consensus 71 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~--~~~~~~~~~~~~l~~~~vdGiI~~~~~~~--- 138 (355)
T 3e3m_A 71 GFVGLLLPS-LNNLHFAQTAQSLTDVLEQG-G-----LQLLLGYTA--YSPEREEQLVETMLRRRPEAMVLSYDGHT--- 138 (355)
T ss_dssp CEEEEEESC-SBCHHHHHHHHHHHHHHHHT-T-----CEEEEEECT--TCHHHHHHHHHHHHHTCCSEEEEECSCCC---
T ss_pred CEEEEEeCC-CCchHHHHHHHHHHHHHHHC-C-----CEEEEEeCC--CChHHHHHHHHHHHhCCCCEEEEeCCCCC---
Confidence 468888754 44456777877776643332 2 223333221 233444 3344454578999999876544
Q ss_pred HHHHHHHHHhCCCeEeeCCCCccCCCCcchhh-hccchhhhhcccC-CCCCCEEEEEeCCCC
Q 016960 297 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYK-LMHGELVEKENWL-PKGQITIGITSGAST 356 (380)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~~dL~~~~~~~~~-~~~~~~~~~~~wl-~~~~~~VGITAGAST 356 (380)
..+++.+.+.+.|...|.+..+-+...-+... ...+.. .-.+| ..|+++||+..|...
T Consensus 139 ~~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~~~~--a~~~L~~~G~r~I~~i~~~~~ 198 (355)
T 3e3m_A 139 EQTIRLLQRASIPIVEIWEKPAHPIGHTVGFSNERAAYD--MTNALLARGFRKIVFLGEKDD 198 (355)
T ss_dssp HHHHHHHHHCCSCEEEESSCCSSCSSEEEECCHHHHHHH--HHHHHHHTTCCSEEEEEESSC
T ss_pred HHHHHHHHhCCCCEEEECCccCCCCCCEEEeChHHHHHH--HHHHHHHCCCCeEEEEccCcc
Confidence 35566677889999998543322211111100 011111 11222 248899999988653
No 44
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=64.82 E-value=8.8 Score=32.56 Aligned_cols=71 Identities=17% Similarity=0.266 Sum_probs=48.9
Q ss_pred hcCCEEEEEccCCCchh--HHHHHHHHHhCCCeEeeCCCCccCCCCcchhhhccchhhhhcccCC--CCCCEEEEE-eCC
Q 016960 280 EKVDLILVVGGWNSSNT--SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLP--KGQITIGIT-SGA 354 (380)
Q Consensus 280 ~~vD~miVVGG~nSSNT--~kL~eia~~~~~~t~~Ie~~~dL~~~~~~~~~~~~~~~~~~~~wl~--~~~~~VGIT-AGA 354 (380)
+++- ++|+..--|.|+ ++|-.+|++++.|.+++.+-.+|- .|+- .....++|| .|.
T Consensus 56 gkak-lViiA~D~~~~~~~~~l~~lc~~~~IP~~~v~sk~eLG------------------~a~G~~~~v~~vaI~d~~~ 116 (135)
T 2aif_A 56 GIAE-IVLLAADAEPLEILLHLPLVCEDKNTPYVFVRSKVALG------------------RACGVSRPVIAAAITSKDG 116 (135)
T ss_dssp TCEE-EEEEETTCSCHHHHHHHHHHHHHTTCCEEEESCHHHHH------------------HHTTCSSCCSEEEEECCTT
T ss_pred CCCe-EEEEecCCChHHHHhHHHHHHHhcCCcEEEECCHHHHH------------------HHhCCCCcEEEEEEEcCCc
Confidence 3444 455555566674 799999999999999999988885 3441 124468888 567
Q ss_pred CCCHHHHHHHHHHHH
Q 016960 355 STPDKAVEDVLKKVF 369 (380)
Q Consensus 355 STP~~lI~eV~~~l~ 369 (380)
|-=..+++++.+.++
T Consensus 117 s~i~~~~~~~~~~~~ 131 (135)
T 2aif_A 117 SSLSSQITELKDQIE 131 (135)
T ss_dssp CTTHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHH
Confidence 776677777766544
No 45
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=64.79 E-value=33 Score=30.61 Aligned_cols=86 Identities=13% Similarity=0.058 Sum_probs=54.7
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhH-HHHHHhhhhcCCEEEEEccCCCchhH
Q 016960 219 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTS 297 (380)
Q Consensus 219 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGG~nSSNT~ 297 (380)
+|+++..+ ++-.-|..+.+-+.+...+. + -++.+.++ + ..++| +.+..|.+..+|.+|+.+.. ++...
T Consensus 4 ~Ig~i~~~-~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~--~-~~~~~~~~i~~l~~~~vdgiii~~~~-~~~~~ 72 (306)
T 8abp_A 4 KLGFLVKQ-PEEPWFQTEWKFADKAGKDL-G-----FEVIKIAV--P-DGEKTLNAIDSLAASGAKGFVICTPD-PKLGS 72 (306)
T ss_dssp EEEEEESC-TTSHHHHHHHHHHHHHHHHH-T-----EEEEEEEC--C-SHHHHHHHHHHHHHTTCCEEEEECSC-GGGHH
T ss_pred EEEEEeCC-CCchHHHHHHHHHHHHHHHc-C-----CEEEEeCC--C-CHHHHHHHHHHHHHcCCCEEEEeCCC-chhhH
Confidence 68888764 45566777877776643333 2 23444444 2 33344 34555555689999988743 34455
Q ss_pred HHHHHHHHhCCCeEeeCC
Q 016960 298 HLQEIAEDRGIPSYWIDS 315 (380)
Q Consensus 298 kL~eia~~~~~~t~~Ie~ 315 (380)
.+++.+++.+.|...+.+
T Consensus 73 ~~~~~~~~~~iPvV~~~~ 90 (306)
T 8abp_A 73 AIVAKARGYDMKVIAVDD 90 (306)
T ss_dssp HHHHHHHHTTCEEEEESS
T ss_pred HHHHHHHHCCCcEEEeCC
Confidence 666777788999999985
No 46
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=63.48 E-value=62 Score=28.79 Aligned_cols=136 Identities=10% Similarity=0.072 Sum_probs=70.4
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhH-HHHHHhhhhcCCEEEEEccCCCchh
Q 016960 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (380)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGG~nSSNT 296 (380)
..|+++... ++-.-|..+.+-+.+...+. + -++.++++ ....++| +.+..|.+..+|.+|+.+...+.
T Consensus 21 ~~Ig~i~~~-~~~~~~~~~~~gi~~~~~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~-- 89 (293)
T 2iks_A 21 RSIGLVIPD-LENTSYTRIANYLERQARQR-G-----YQLLIACS--EDQPDNEMRCIEHLLQRQVDAIIVSTSLPPE-- 89 (293)
T ss_dssp CEEEEEESC-SCSHHHHHHHHHHHHHHHHT-T-----CEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECCSSCTT--
T ss_pred cEEEEEeCC-CcCcHHHHHHHHHHHHHHHC-C-----CEEEEEcC--CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCc--
Confidence 579988764 44556777777776543322 2 12333322 1123344 33455555689999998764332
Q ss_pred HHHHHHHHHhCCCeEeeCCCCccCCCCcchhhh-ccchhhhhcccC-CCCCCEEEEEeCCCCCHHHHHHHHH
Q 016960 297 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGASTPDKAVEDVLK 366 (380)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~~dL~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGASTP~~lI~eV~~ 366 (380)
..+++.+++.+.|...+.+..+-+...-+...- ..+.. ..+|| ..|.++||+..|.....+..+....
T Consensus 90 ~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~--a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~G 159 (293)
T 2iks_A 90 HPFYQRWANDPFPIVALDRALDREHFTSVVGADQDDAEM--LAEELRKFPAETVLYLGALPELSVSFLREQG 159 (293)
T ss_dssp CHHHHTTTTSSSCEEEEESCCCTTTCEEEEECHHHHHHH--HHHHHHTSCCSSEEEEEECTTSHHHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEECCccCcCCCCEEEecCHHHHHH--HHHHHHHCCCCEEEEEecCcccccHHHHHHH
Confidence 234445556788998887643211111111000 11111 11333 2378999999987544444343333
No 47
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=62.08 E-value=29 Score=31.81 Aligned_cols=57 Identities=23% Similarity=0.227 Sum_probs=42.2
Q ss_pred cccccccccHHHHHhHHHHHHhhhhcCCEEEEEccCCCchhHHHHHHHHHhCCCeEeeCC
Q 016960 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDS 315 (380)
Q Consensus 256 ~~~~~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGG~nSSNT~kL~eia~~~~~~t~~Ie~ 315 (380)
++.+.|+-|.....++. +.+|....||+ |||...|+.+..+.+++++.+.|.+...+
T Consensus 45 ~l~~~d~~~~~~~~~~~-~~~l~~~~v~~--iig~~~s~~~~~~~~~~~~~~ip~v~~~~ 101 (356)
T 3ipc_A 45 KIVLGDDVSDPKQGISV-ANKFVADGVKF--VVGHANSGVSIPASEVYAENGILEITPAA 101 (356)
T ss_dssp EEEEEECTTCHHHHHHH-HHHHHHTTCCE--EEECSSHHHHHHHHHHHHTTTCEEEESSC
T ss_pred EEEEecCCCCHHHHHHH-HHHHHHCCCcE--EEcCCCcHHHHHHHHHHHhCCCeEEecCC
Confidence 56678888877665444 44555456776 78889999999999999999888766443
No 48
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=61.26 E-value=25 Score=32.28 Aligned_cols=132 Identities=15% Similarity=0.140 Sum_probs=70.5
Q ss_pred ceeEEEEcCC-CChHHHHHHHHHHHHHHhhhc---ccccccccccccccccHHHHHhHHHHHHhh-hhcCCEEEEEccCC
Q 016960 218 VKVGIANQTT-MLKGETEEIGKLVEKTMMRKF---GVENVNEHFISFNTICDATQERQDAMYKMV-EEKVDLILVVGGWN 292 (380)
Q Consensus 218 ~kv~vvsQTT-~~~~~~~~i~~~l~~~~~~~~---~~~~~~~~~~~~nTIC~AT~~RQ~a~~eLa-~~~vD~miVVGG~n 292 (380)
-+|+++.-.| .....+..+...++..+.+.- +.....-++.+.|+-|.....+ +++.+|. +..|| .|||...
T Consensus 5 i~IG~i~p~sg~~~~~~~~~~~g~~~a~~~~n~~ggi~G~~~~l~~~d~~~~~~~~~-~~~~~l~~~~~v~--~iig~~~ 81 (358)
T 3hut_A 5 LLLGYELPLTGANAAYGRVFQEAARLQLDRFNAAGGVGGRPVDILYADSRDDADQAR-TIARAFVDDPRVV--GVLGDFS 81 (358)
T ss_dssp EEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTCHHHHH-HHHHHHHHCTTEE--EEEECSS
T ss_pred EEEEEEeccCCchhhcCHHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCCCCHHHHH-HHHHHHhccCCcE--EEEcCCC
Confidence 3788776444 333444555555443222220 0001113566778888765554 3455565 33454 4568888
Q ss_pred CchhHHHHHHHHHhCCCeEeeCCCC-ccCCCCcchhhh---ccchhhhhcccC-CCCCCEEEEEe
Q 016960 293 SSNTSHLQEIAEDRGIPSYWIDSEK-RIGPGNKIAYKL---MHGELVEKENWL-PKGQITIGITS 352 (380)
Q Consensus 293 SSNT~kL~eia~~~~~~t~~Ie~~~-dL~~~~~~~~~~---~~~~~~~~~~wl-~~~~~~VGITA 352 (380)
|+.+..+.+++++.+.|.+...+.. ++.......|.. -..+.....+|| ..+.++|++..
T Consensus 82 s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~ 146 (358)
T 3hut_A 82 STVSMAAGSIYGKEGMPQLSPTAAHPDYIKISPWQFRAITTPAFEGPNNAAWMIGDGFTSVAVIG 146 (358)
T ss_dssp HHHHHHHHHHHHHHTCCEEESSCCCGGGTTSCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEE
T ss_pred cHHHHHHHHHHHHCCCcEEecCCCCcccccCCCeEEEecCChHHHHHHHHHHHHHcCCCEEEEEe
Confidence 8889999999999999988764432 333211111111 111112222343 13688999986
No 49
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=61.18 E-value=15 Score=32.89 Aligned_cols=70 Identities=16% Similarity=0.159 Sum_probs=46.3
Q ss_pred CCceEEecccccCHHHHHHHHHcCcEEecCCc---cccccc----cccCCCEEEEcCCCCCHHHHHHHHhcCCcE-----
Q 016960 55 EEKIWITNEIIHNPTVNKRLEEMAVQNIPVEE---GKKQFD----VVNKGDVVVLPAFGAAVEEMVTLNNKNVQI----- 122 (380)
Q Consensus 55 ~~~Iy~lG~LIHN~~Vv~~L~~~Gv~~v~~~~---~~~~~~----el~~g~~VIIrAHGv~~~~~~~l~~~g~~v----- 122 (380)
+.++|+.|+ ..-+.|++.|+...--.+ ...-++ .++...++++|+-+-.+...+.|+++|..|
T Consensus 67 ~~~i~aVG~-----~Ta~aL~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~v 141 (229)
T 3p9z_A 67 NIPAYALSE-----PTAKTLQDHHFKVAFMGEKAHGKEFVQEIFPLLEKKSVLYLRAKEIVSSLDTILLEHGIDFKQAVV 141 (229)
T ss_dssp TSCEEESSH-----HHHHHHHHTTCCBCCCCC---------CCHHHHTTCEEEEEEESSCSSCHHHHHHHTTCEEEEEEE
T ss_pred CCcEEEECH-----HHHHHHHHcCCCeeecCCcccHHHHHHHHHhhCCCCEEEEECCccchHHHHHHHHHCCCeEEEEEE
Confidence 357999995 566899999997542111 001111 233344678999988999999999999876
Q ss_pred EeccCch
Q 016960 123 VDTTCPW 129 (380)
Q Consensus 123 iDaTCP~ 129 (380)
|++.||-
T Consensus 142 Y~~~~~~ 148 (229)
T 3p9z_A 142 YENKLKH 148 (229)
T ss_dssp EEEEECC
T ss_pred EEeeCCC
Confidence 5555553
No 50
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=61.17 E-value=86 Score=27.57 Aligned_cols=134 Identities=15% Similarity=0.105 Sum_probs=73.3
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhH-HHHHHhhhhcCCEEEEEccCCCchh
Q 016960 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (380)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGG~nSSNT 296 (380)
..|+++.-.. +-.-|..+.+-+.+...+. + -++.++++ ....++| +.+..|.+..+|.+|+.+.. ++..
T Consensus 6 ~~Ig~i~~~~-~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~-~~~~ 75 (291)
T 3l49_A 6 KTIGITAIGT-DHDWDLKAYQAQIAEIERL-G-----GTAIALDA--GRNDQTQVSQIQTLIAQKPDAIIEQLGN-LDVL 75 (291)
T ss_dssp CEEEEEESCC-SSHHHHHHHHHHHHHHHHT-T-----CEEEEEEC--TTCHHHHHHHHHHHHHHCCSEEEEESSC-HHHH
T ss_pred cEEEEEeCCC-CChHHHHHHHHHHHHHHHc-C-----CEEEEEcC--CCCHHHHHHHHHHHHHcCCCEEEEeCCC-hhhh
Confidence 5789887654 4455667777776643322 2 23444433 2233444 34445555789999988653 3445
Q ss_pred HHHHHHHHHhCCCeEeeCCCCccCCCCcchhh-hccchhhhhcccCC---CCCCEEEEEeCCCCCHHHHHHH
Q 016960 297 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYK-LMHGELVEKENWLP---KGQITIGITSGASTPDKAVEDV 364 (380)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~~dL~~~~~~~~~-~~~~~~~~~~~wl~---~~~~~VGITAGASTP~~lI~eV 364 (380)
..+++.+.+.+.|...+.+..+- ...-+... ...+.. .-.||. .|.++|++..|........+..
T Consensus 76 ~~~~~~~~~~~iPvV~~~~~~~~-~~~~V~~D~~~~g~~--~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~ 144 (291)
T 3l49_A 76 NPWLQKINDAGIPLFTVDTATPH-AINNTTSNNYSIGAE--LALQMVADLGGKGNVLVFNGFYSVPVCKIRY 144 (291)
T ss_dssp HHHHHHHHHTTCCEEEESCCCTT-CSEEEEECHHHHHHH--HHHHHHHHHTTCEEEEEECSCTTSHHHHHHH
T ss_pred HHHHHHHHHCCCcEEEecCCCCC-cCceEecChHHHHHH--HHHHHHHHcCCCceEEEEeCCCCCchHHHHH
Confidence 56677777889999999875431 10111100 011111 112221 4789999998865444443333
No 51
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=61.05 E-value=86 Score=27.52 Aligned_cols=90 Identities=10% Similarity=0.159 Sum_probs=52.3
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhH-HHHHHhhhhcCCEEEEEccCCCchh
Q 016960 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (380)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGG~nSSNT 296 (380)
+.|+++... ++-.-|..+++-+.+...+. + -++.+.++ ....++| +.+..|.+.++|.+|+.+.. ++..
T Consensus 2 ~~Igvi~~~-~~~~f~~~~~~gi~~~~~~~-g-----~~~~~~~~--~~~~~~~~~~i~~l~~~~vdgiIi~~~~-~~~~ 71 (271)
T 2dri_A 2 DTIALVVST-LNNPFFVSLKDGAQKEADKL-G-----YNLVVLDS--QNNPAKELANVQDLTVRGTKILLINPTD-SDAV 71 (271)
T ss_dssp CEEEEEESC-SSSHHHHHHHHHHHHHHHHH-T-----CEEEEEEC--TTCHHHHHHHHHHHTTTTEEEEEECCSS-TTTT
T ss_pred cEEEEEecC-CCCHHHHHHHHHHHHHHHHc-C-----cEEEEeCC--CCCHHHHHHHHHHHHHcCCCEEEEeCCC-hHHH
Confidence 367887754 44566777877776643332 2 12333222 1222334 34455555689999987543 3333
Q ss_pred HHHHHHHHHhCCCeEeeCCCC
Q 016960 297 SHLQEIAEDRGIPSYWIDSEK 317 (380)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~~ 317 (380)
..+++.+.+.+.|...+.+..
T Consensus 72 ~~~~~~~~~~~iPvV~i~~~~ 92 (271)
T 2dri_A 72 GNAVKMANQANIPVITLDRQA 92 (271)
T ss_dssp HHHHHHHHHTTCCEEEESSCC
T ss_pred HHHHHHHHHCCCcEEEecCCC
Confidence 445566667889999998753
No 52
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=60.81 E-value=53 Score=29.29 Aligned_cols=128 Identities=11% Similarity=-0.039 Sum_probs=68.6
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccc-cccccHHHHHhH-HHHHHhhhhcCCEEEEEccCCCch
Q 016960 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFIS-FNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSN 295 (380)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGG~nSSN 295 (380)
++++++.... +-.-|..+.+-+.+...+. + -++.+ .++ ....++| +.+..|.+..+|.+|+.+...+..
T Consensus 5 ~~I~~i~~~~-~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~--~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~ 75 (305)
T 3g1w_A 5 ETYMMITFQS-GMDYWKRCLKGFEDAAQAL-N-----VTVEYRGAA--QYDIQEQITVLEQAIAKNPAGIAISAIDPVEL 75 (305)
T ss_dssp CEEEEEESST-TSTHHHHHHHHHHHHHHHH-T-----CEEEEEECS--SSCHHHHHHHHHHHHHHCCSEEEECCSSTTTT
T ss_pred ceEEEEEccC-CChHHHHHHHHHHHHHHHc-C-----CEEEEeCCC--cCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHH
Confidence 5788888764 3456777777776643332 2 12332 122 2233444 344455557899999987654433
Q ss_pred hHHHHHHHHHhCCCeEeeCCCCccCC-CCcchhhh-ccchh-h-hhcccCCCCCCEEEEEeCCCC
Q 016960 296 TSHLQEIAEDRGIPSYWIDSEKRIGP-GNKIAYKL-MHGEL-V-EKENWLPKGQITIGITSGAST 356 (380)
Q Consensus 296 T~kL~eia~~~~~~t~~Ie~~~dL~~-~~~~~~~~-~~~~~-~-~~~~wl~~~~~~VGITAGAST 356 (380)
...++.+.+.+.|...+.+..+-.. ..-+...- ..+.. . .-.+.+ .|.++|++..|...
T Consensus 76 -~~~~~~~~~~~iPvV~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~-~g~~~i~~i~~~~~ 138 (305)
T 3g1w_A 76 -TDTINKAVDAGIPIVLFDSGAPDSHAHSFLGTNNYNAGMNAAYKMAELL-DGEGEVAVITLPNQ 138 (305)
T ss_dssp -HHHHHHHHHTTCCEEEESSCCTTSCCSCEEECCHHHHHHHHHHHHHHHT-TTCEEEEEEECTTC
T ss_pred -HHHHHHHHHCCCcEEEECCCCCCCceeEEECcCHHHHHHHHHHHHHHHh-CCCcEEEEEeCCCc
Confidence 4455566678899999987543211 11111110 11111 1 001222 37899999988654
No 53
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=60.19 E-value=87 Score=27.28 Aligned_cols=133 Identities=11% Similarity=0.156 Sum_probs=69.9
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhHH-HHHHhhhhcCCEEEEEccCCCchh
Q 016960 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNT 296 (380)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-a~~eLa~~~vD~miVVGG~nSSNT 296 (380)
..|+++... ++-.-|..+.+-+.+...+. + -++.++++ ....++|. .+..|....+|.+|+.+...+
T Consensus 4 ~~Ig~i~~~-~~~~~~~~~~~gi~~~~~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgii~~~~~~~--- 71 (275)
T 3d8u_A 4 YSIALIIPS-LFEKACAHFLPSFQQALNKA-G-----YQLLLGYS--DYSIEQEEKLLSTFLESRPAGVVLFGSEHS--- 71 (275)
T ss_dssp CEEEEEESC-SSCHHHHHHHHHHHHHHHHT-S-----CEECCEEC--TTCHHHHHHHHHHHHTSCCCCEEEESSCCC---
T ss_pred eEEEEEeCC-CccccHHHHHHHHHHHHHHC-C-----CEEEEEcC--CCCHHHHHHHHHHHHhcCCCEEEEeCCCCC---
Confidence 478888754 34556777777776543322 2 22333322 22334443 345555568999999876433
Q ss_pred HHHHHHHHHhCCCeEeeCCCCccCCCCcchhhh-ccchhhhhcccC-CCCCCEEEEEeCCCCCHHHHHHH
Q 016960 297 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGASTPDKAVEDV 364 (380)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~~dL~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGASTP~~lI~eV 364 (380)
..+++.+++.+.|...+.+..+-+...-+...- ..+.. .-+|| ..|.++||+-+|.....+..+..
T Consensus 72 ~~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~--a~~~L~~~G~~~i~~i~~~~~~~~~~~R~ 139 (275)
T 3d8u_A 72 QRTHQLLEASNTPVLEIAELSSKASYLNIGVDHFEVGKA--CTRHLIEQGFKNVGFIGARGNHSTLQRQL 139 (275)
T ss_dssp HHHHHHHHHHTCCEEEESSSCSSSSSEEECBCHHHHHHH--HHHHHHTTTCCCEEEEECSCSSHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEeeccCCCCCCEEEEChHHHHHH--HHHHHHHCCCCeEEEEcCCCCCchHHHHH
Confidence 245555667889999997643211100011000 11111 11333 23789999999875444433333
No 54
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=59.87 E-value=93 Score=27.53 Aligned_cols=131 Identities=12% Similarity=0.070 Sum_probs=67.2
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhHH-HHHHhhhhcCCEEEEEccCCCchh
Q 016960 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNT 296 (380)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-a~~eLa~~~vD~miVVGG~nSSNT 296 (380)
..|+++... ++-.-|..+.+-+.+...+. + -++.++++ ....++|. .+..|.+..+|.+|+.+...+
T Consensus 9 ~~Igvi~~~-~~~~~~~~~~~gi~~~~~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~--- 76 (285)
T 3c3k_A 9 GMLLVMVSN-IANPFCAAVVKGIEKTAEKN-G-----YRILLCNT--ESDLARSRSCLTLLSGKMVDGVITMDALSE--- 76 (285)
T ss_dssp CEEEEEESC-TTSHHHHHHHHHHHHHHHHT-T-----CEEEEEEC--TTCHHHHHHHTHHHHTTCCSEEEECCCGGG---
T ss_pred CEEEEEeCC-CCCchHHHHHHHHHHHHHHc-C-----CEEEEEeC--CCCHHHHHHHHHHHHhCCCCEEEEeCCCCC---
Confidence 579988764 34456777777776543322 2 22333332 22233443 344554468999999875322
Q ss_pred HHHHHHHHHhCCCeEeeCCCCccCCCCcchhhh-ccchhhhhcccC-CCCCCEEEEEeCCCCCHHHHHH
Q 016960 297 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGASTPDKAVED 363 (380)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~~dL~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGASTP~~lI~e 363 (380)
...++.+. .+.|...+.+..+-+...-+...- ..+.. -.+|| ..|.++||+..|.....+..+.
T Consensus 77 ~~~~~~l~-~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~--a~~~L~~~G~~~I~~i~~~~~~~~~~~R 142 (285)
T 3c3k_A 77 LPELQNII-GAFPWVQCAEYDPLSTVSSVSIDDVAASEY--VVDQLVKSGKKRIALINHDLAYQYAQHR 142 (285)
T ss_dssp HHHHHHHH-TTSSEEEESSCCTTSSSCEEECCHHHHHHH--HHHHHHHTTCCCEEEEECCTTSHHHHHH
T ss_pred hHHHHHHh-cCCCEEEEccccCCCCCCEEEEChHHHHHH--HHHHHHHcCCCeEEEEeCCCccccHHHH
Confidence 23334445 788999887643211111111100 11111 11233 1378999999987544444333
No 55
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=59.43 E-value=47 Score=30.91 Aligned_cols=58 Identities=16% Similarity=0.115 Sum_probs=43.1
Q ss_pred ccccccccccHHHHHhHHHHHHhhh-hcCCEEEEEccCCCchhHHHHHHHHHhCCCeEeeCC
Q 016960 255 EHFISFNTICDATQERQDAMYKMVE-EKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDS 315 (380)
Q Consensus 255 ~~~~~~nTIC~AT~~RQ~a~~eLa~-~~vD~miVVGG~nSSNT~kL~eia~~~~~~t~~Ie~ 315 (380)
-++.+.|+-|......+ ++.+|.. ..||+ |||...|+.+..+..+|.+.+.|.+....
T Consensus 47 i~l~~~D~~~~~~~~~~-~~~~li~~~~v~a--iiG~~~s~~~~a~~~~~~~~~ip~i~~~~ 105 (387)
T 3i45_A 47 LEVISRDDGGDPGKAVT-AAQELLTRHGVHA--LAGTFLSHVGLAVSDFARQRKVLFMASEP 105 (387)
T ss_dssp EEEEEEECTTCHHHHHH-HHHHHHHHHCCSE--EEECCSHHHHHHHHHHHHHHTCCEEECSC
T ss_pred eEEEEecCCCCHHHHHH-HHHHHHHhcCCEE--EECCcchHHHHHHHHHHHHcCceEEecCC
Confidence 35667898887766554 4445553 36776 78999999999999999999998776543
No 56
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=59.41 E-value=82 Score=28.69 Aligned_cols=89 Identities=9% Similarity=0.085 Sum_probs=52.7
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhH-HHHHHhhhhc--CCEEEEEccCCCc
Q 016960 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEK--VDLILVVGGWNSS 294 (380)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~eLa~~~--vD~miVVGG~nSS 294 (380)
..|+++... ++-.-|..+.+-+.+...+. + -++.++++ ....++| +.+..|.+.. +|.+|+.+... +
T Consensus 6 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~~-g-----~~l~~~~~--~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~-~ 75 (332)
T 2rjo_A 6 TTLACSFRS-LTNPYYTAFNKGAQSFAKSV-G-----LPYVPLTT--EGSSEKGIADIRALLQKTGGNLVLNVDPNDS-A 75 (332)
T ss_dssp CEEEEEESC-TTSHHHHHHHHHHHHHHHHH-T-----CCEEEEEC--TTCHHHHHHHHHHHHHHTTTCEEEEECCSSH-H
T ss_pred cEEEEEecC-CCcHHHHHHHHHHHHHHHHc-C-----CEEEEecC--CCCHHHHHHHHHHHHHCCCCCCEEEEeCCCH-H
Confidence 479988764 44556777777776543332 2 22333322 2223444 3455555567 99999876532 2
Q ss_pred hhHHHHHHHHHhCCCeEeeCCC
Q 016960 295 NTSHLQEIAEDRGIPSYWIDSE 316 (380)
Q Consensus 295 NT~kL~eia~~~~~~t~~Ie~~ 316 (380)
....+++.+.+.+.|...+.+.
T Consensus 76 ~~~~~~~~~~~~~iPvV~~~~~ 97 (332)
T 2rjo_A 76 DARVIVEACSKAGAYVTTIWNK 97 (332)
T ss_dssp HHHHHHHHHHHHTCEEEEESCC
T ss_pred HHHHHHHHHHHCCCeEEEECCC
Confidence 2335566666788999888875
No 57
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=59.34 E-value=36 Score=31.35 Aligned_cols=135 Identities=13% Similarity=0.131 Sum_probs=74.4
Q ss_pred ceeEEEEcCCCC-hHHHHHHHHHHHHHHhhhccc-ccccccccccccccHHHHHhHHHHHHhhhhc-CCEEEEEccCCCc
Q 016960 218 VKVGIANQTTML-KGETEEIGKLVEKTMMRKFGV-ENVNEHFISFNTICDATQERQDAMYKMVEEK-VDLILVVGGWNSS 294 (380)
Q Consensus 218 ~kv~vvsQTT~~-~~~~~~i~~~l~~~~~~~~~~-~~~~~~~~~~nTIC~AT~~RQ~a~~eLa~~~-vD~miVVGG~nSS 294 (380)
.+||++.-.|=. ...-..+.+-++..+.+. .. ....-++.+.||-|.....++ ++.+|.... ||+ |||...|+
T Consensus 17 ~~iG~~~plsG~~a~~g~~~~~g~~~a~~~i-n~i~G~~i~l~~~D~~~~~~~~~~-~~~~l~~~~~v~~--iiG~~~s~ 92 (366)
T 3td9_A 17 VKIAVILPMTGGISAFGRMVWEGIQIAHEEK-PTVLGEEVELVLLDTRSEKTEAAN-AAARAIDKEKVLA--IIGEVASA 92 (366)
T ss_dssp EEEEEEECCSSTTHHHHHHHHHHHHHHHHHC-CEETTEEEEEEEEECTTCHHHHHH-HHHHHHHTSCCSE--EEECSSHH
T ss_pred EEEEEEECCcCcchhcCHHHHHHHHHHHHHh-hhcCCeEEEEEEecCCCCHHHHHH-HHHHHhccCCeEE--EEccCCch
Confidence 589877655544 333455555554332222 10 001135667888887765544 455565332 554 56888899
Q ss_pred hhHHHHHHHHHhCCCeEeeCCC-CccCCCCcchhhh-cc--chhhhhcccC-CC-CCCEEEEEeCCCC
Q 016960 295 NTSHLQEIAEDRGIPSYWIDSE-KRIGPGNKIAYKL-MH--GELVEKENWL-PK-GQITIGITSGAST 356 (380)
Q Consensus 295 NT~kL~eia~~~~~~t~~Ie~~-~dL~~~~~~~~~~-~~--~~~~~~~~wl-~~-~~~~VGITAGAST 356 (380)
.+..+.+++++.+.|.+..... .++.......|.. .. .+......|+ .. +.++|++..+.+.
T Consensus 93 ~~~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~ 160 (366)
T 3td9_A 93 HSLAIAPIAEENKVPMVTPASTNPLVTQGRKFVSRVCFIDPFQGAAMAVFAYKNLGAKRVVVFTDVEQ 160 (366)
T ss_dssp HHHHHHHHHHHTTCCEEESSCCCGGGTTTCSSEEESSCCHHHHHHHHHHHHHHTSCCCEEEEEEETTC
T ss_pred hHHHHHHHHHhCCCeEEecCCCCccccCCCCCEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEEEeCCC
Confidence 9999999999999998777543 3332211112211 11 1112222444 22 7899999976433
No 58
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=58.80 E-value=97 Score=27.40 Aligned_cols=89 Identities=16% Similarity=0.065 Sum_probs=52.1
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccc-cccccHHHHHhH-HHHHHhhhhcCCEEEEEccCCCch
Q 016960 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFIS-FNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSN 295 (380)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGG~nSSN 295 (380)
.+|+++...+ .-.-|..+.+-+.+...+. + -++.+ .++ ....++| +.+..|....+|.+|+.+. .++.
T Consensus 5 ~~Ig~i~~~~-~~~~~~~~~~g~~~~~~~~-g-----~~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiii~~~-~~~~ 74 (303)
T 3d02_A 5 KTVVNISKVD-GMPWFNRMGEGVVQAGKEF-N-----LNASQVGPS--STDAPQQVKIIEDLIARKVDAITIVPN-DANV 74 (303)
T ss_dssp EEEEEECSCS-SCHHHHHHHHHHHHHHHHT-T-----EEEEEECCS--SSCHHHHHHHHHHHHHTTCSEEEECCS-CHHH
T ss_pred eEEEEEeccC-CChHHHHHHHHHHHHHHHc-C-----CEEEEECCC--CCCHHHHHHHHHHHHHcCCCEEEEecC-ChHH
Confidence 4788887543 3456677777776543322 2 12322 112 2233444 3455555468999988765 3333
Q ss_pred hHHHHHHHHHhCCCeEeeCCC
Q 016960 296 TSHLQEIAEDRGIPSYWIDSE 316 (380)
Q Consensus 296 T~kL~eia~~~~~~t~~Ie~~ 316 (380)
...+++.+.+.+.|...+.+.
T Consensus 75 ~~~~~~~~~~~~ipvV~~~~~ 95 (303)
T 3d02_A 75 LEPVFKKARDAGIVVLTNESP 95 (303)
T ss_dssp HHHHHHHHHHTTCEEEEESCT
T ss_pred HHHHHHHHHHCCCeEEEEecC
Confidence 345566677788999988875
No 59
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=58.65 E-value=1.1e+02 Score=27.85 Aligned_cols=134 Identities=13% Similarity=0.060 Sum_probs=70.1
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhH-HHHHHhhhhcCCEEEEEccCCCchh
Q 016960 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (380)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGG~nSSNT 296 (380)
++|+++..++ .-.-|..+.+-+++...+. + -++.+.+ .......+| +.+..|.+..+|.+||.+. .++..
T Consensus 4 ~~Igvi~~~~-~~~~~~~~~~g~~~~~~~~-g-----~~~~~~~-~~~~d~~~q~~~i~~li~~~vdgiii~~~-~~~~~ 74 (316)
T 1tjy_A 4 ERIAFIPKLV-GVGFFTSGGNGAQEAGKAL-G-----IDVTYDG-PTEPSVSGQVQLVNNFVNQGYDAIIVSAV-SPDGL 74 (316)
T ss_dssp CEEEEECSSS-SSHHHHHHHHHHHHHHHHH-T-----CEEEECC-CSSCCHHHHHHHHHHHHHTTCSEEEECCS-SSSTT
T ss_pred CEEEEEeCCC-CChHHHHHHHHHHHHHHHh-C-----CEEEEEC-CCCCCHHHHHHHHHHHHHcCCCEEEEeCC-CHHHH
Confidence 4788887653 4456777777776643322 2 1233321 012333444 3345555568999887654 33333
Q ss_pred HHHHHHHHHhCCCeEeeCCCCccC-CCCcc-hhh-hccchhhhhcccCC----CCCCEEEEEeCCCCCHHHHH
Q 016960 297 SHLQEIAEDRGIPSYWIDSEKRIG-PGNKI-AYK-LMHGELVEKENWLP----KGQITIGITSGASTPDKAVE 362 (380)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~~dL~-~~~~~-~~~-~~~~~~~~~~~wl~----~~~~~VGITAGASTP~~lI~ 362 (380)
...++.+++.+.|...+++.-+-. ...-+ ... ...+.. .-+||. .+.++|++-.|..+-.....
T Consensus 75 ~~~~~~a~~~gipvV~~d~~~~~~~~~~~v~~~D~~~~g~~--~~~~L~~~~~~g~~~i~~i~g~~~~~~~~~ 145 (316)
T 1tjy_A 75 CPALKRAMQRGVKILTWDSDTKPECRSYYINQGTPKQLGSM--LVEMAAHQVDKEKAKVAFFYSSPTVTDQNQ 145 (316)
T ss_dssp HHHHHHHHHTTCEEEEESSCCCGGGCSEEEESCCHHHHHHH--HHHHHHHHHCSSSEEEEEEESCSSCHHHHH
T ss_pred HHHHHHHHHCcCEEEEecCCCCCCCceEEEecCCHHHHHHH--HHHHHHHHcCCCCCEEEEEEcCCCChhHHH
Confidence 555667778899998887642211 11011 111 011111 112221 26889999999765444333
No 60
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=57.97 E-value=1.1e+02 Score=27.77 Aligned_cols=131 Identities=18% Similarity=0.201 Sum_probs=67.1
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhH-HHHHHhhhhcCCEEEEEccCCCchh
Q 016960 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (380)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGG~nSSNT 296 (380)
..|+++.-+ +-.-|..+.+-+.+...+.. +-++.++++ .....+| +.+..|.+..+|.+|+.+.. ++..
T Consensus 7 ~~Igvi~~~--~~~~~~~~~~gi~~~a~~~~-----g~~l~i~~~--~~~~~~~~~~i~~l~~~~vdgiIi~~~~-~~~~ 76 (325)
T 2x7x_A 7 FRIGVAQCS--DDSWRHKMNDEILREAMFYN-----GVSVEIRSA--GDDNSKQAEDVHYFMDEGVDLLIISANE-AAPM 76 (325)
T ss_dssp CEEEEEESC--CSHHHHHHHHHHHHHHTTSS-----SCEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECCSS-HHHH
T ss_pred eEEEEEecC--CCHHHHHHHHHHHHHHHHcC-----CcEEEEeCC--CCCHHHHHHHHHHHHHcCCCEEEEeCCC-HHHH
Confidence 478888755 55556677776665322110 122333322 2223344 34555555689999988642 2222
Q ss_pred HHHHHHHHHhCCCeEeeCCCCccC-CCCcchhh-hccchhhhhcccCC---CCCCEEEEEeCCCCCHHH
Q 016960 297 SHLQEIAEDRGIPSYWIDSEKRIG-PGNKIAYK-LMHGELVEKENWLP---KGQITIGITSGASTPDKA 360 (380)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~~dL~-~~~~~~~~-~~~~~~~~~~~wl~---~~~~~VGITAGASTP~~l 360 (380)
..+++.+.+.+.|...+.+..+-. ...-+... ...+.. ..+||. .|.++||+..|...-.+.
T Consensus 77 ~~~~~~~~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~--a~~~L~~~~~G~~~I~~i~~~~~~~~~ 143 (325)
T 2x7x_A 77 TPIVEEAYQKGIPVILVDRKILSDKYTAYIGADNYEIGRS--VGNYIASSLKGKGNIVELTGLSGSTPA 143 (325)
T ss_dssp HHHHHHHHHTTCCEEEESSCCSSSCSSEEEEECHHHHHHH--HHHHHHHHTTTEEEEEEEESCTTSHHH
T ss_pred HHHHHHHHHCCCeEEEeCCCCCCcceeEEEecCHHHHHHH--HHHHHHHHcCCCceEEEEECCCCCccH
Confidence 355566667889999887643211 10001100 011111 113332 278999999886443333
No 61
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=57.42 E-value=98 Score=27.03 Aligned_cols=132 Identities=17% Similarity=0.140 Sum_probs=69.0
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhHHH-HHHhhhhcCCEEEEEccCCCchh
Q 016960 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDA-MYKMVEEKVDLILVVGGWNSSNT 296 (380)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a-~~eLa~~~vD~miVVGG~nSSNT 296 (380)
..|+++... ++-.-|..+.+-+.+...+. + -++.++++ ....++|.. +..|.+..+|.+|+.+ .+
T Consensus 9 ~~Ig~i~~~-~~~~~~~~~~~gi~~~~~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~~dgiIi~~----~~- 74 (277)
T 3e61_A 9 KLIGLLLPD-MSNPFFTLIARGVEDVALAH-G-----YQVLIGNS--DNDIKKAQGYLATFVSHNCTGMISTA----FN- 74 (277)
T ss_dssp -CEEEEESC-TTSHHHHHHHHHHHHHHHHT-T-----CCEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECG----GG-
T ss_pred CEEEEEECC-CCCHHHHHHHHHHHHHHHHC-C-----CEEEEEeC--CCCHHHHHHHHHHHHhCCCCEEEEec----CC-
Confidence 478888765 45566788887777643332 2 22333322 123344433 3444446899999987 22
Q ss_pred HHHHH-HHHHhCCCeEeeCCCCccCCCCcchhhh-ccchhhhhcccC-CCCCCEEEEEeCCCCCHHHHHHHHHH
Q 016960 297 SHLQE-IAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGASTPDKAVEDVLKK 367 (380)
Q Consensus 297 ~kL~e-ia~~~~~~t~~Ie~~~dL~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGASTP~~lI~eV~~~ 367 (380)
...++ .+++.+.|...+.+..+-.. -+...- ..+.. ...+| ..|.++|++..|...-.+..+....+
T Consensus 75 ~~~~~~~l~~~~iPvV~~~~~~~~~~--~V~~D~~~~g~~--a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf 144 (277)
T 3e61_A 75 ENIIENTLTDHHIPFVFIDRINNEHN--GISTNHFKGGQL--QAEVVRKGKGKNVLIVHENLLIDAFHQRVQGI 144 (277)
T ss_dssp HHHHHHHHHHC-CCEEEGGGCC-----------HHHHHHH--HHHHHHHTTCCSEEEEESCTTSHHHHHHHHHH
T ss_pred hHHHHHHHHcCCCCEEEEeccCCCCC--eEEechHHHHHH--HHHHHHHCCCCeEEEEeCCCCCccHHHHHHHH
Confidence 34455 66678999999987643221 111110 11111 11222 14789999999876544444444333
No 62
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=56.61 E-value=1.1e+02 Score=27.13 Aligned_cols=88 Identities=17% Similarity=0.237 Sum_probs=51.1
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhH-HHHHHhhhhcCCEEEEEccCCCchhH
Q 016960 219 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTS 297 (380)
Q Consensus 219 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGG~nSSNT~ 297 (380)
.|+++... +.-.-|..+.+-+.+...+. + -++.+.++ ....++| +.+..|.+.++|.+|+.+. .++...
T Consensus 3 ~Igvi~~~-~~~~f~~~~~~gi~~~~~~~-g-----~~~~~~~~--~~~~~~~~~~i~~l~~~~vdgiIi~~~-~~~~~~ 72 (283)
T 2ioy_A 3 TIGLVIST-LNNPFFVTLKNGAEEKAKEL-G-----YKIIVEDS--QNDSSKELSNVEDLIQQKVDVLLINPV-DSDAVV 72 (283)
T ss_dssp EEEEEESC-SSSHHHHHHHHHHHHHHHHH-T-----CEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECCS-STTTTH
T ss_pred EEEEEecC-CCCHHHHHHHHHHHHHHHhc-C-----cEEEEecC--CCCHHHHHHHHHHHHHcCCCEEEEeCC-chhhhH
Confidence 57777644 44556777777776543322 2 12323222 1223344 3455555568999998764 333434
Q ss_pred HHHHHHHHhCCCeEeeCCC
Q 016960 298 HLQEIAEDRGIPSYWIDSE 316 (380)
Q Consensus 298 kL~eia~~~~~~t~~Ie~~ 316 (380)
..++.+.+.+.|...+.+.
T Consensus 73 ~~~~~~~~~~iPvV~~~~~ 91 (283)
T 2ioy_A 73 TAIKEANSKNIPVITIDRS 91 (283)
T ss_dssp HHHHHHHHTTCCEEEESSC
T ss_pred HHHHHHHHCCCeEEEecCC
Confidence 4556667788999998864
No 63
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=56.16 E-value=1e+02 Score=26.97 Aligned_cols=133 Identities=13% Similarity=-0.012 Sum_probs=67.3
Q ss_pred ceeEEEEcCCC-ChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhH-HHHHHhhhhcCCEEEEEccCCCch
Q 016960 218 VKVGIANQTTM-LKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSN 295 (380)
Q Consensus 218 ~kv~vvsQTT~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGG~nSSN 295 (380)
..|+++....- .-.-|..+.+-+.+...+. + -++.+.++--....++| +.+..|.+..+|.+|+.+... ++
T Consensus 6 ~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~-~~ 78 (289)
T 3brs_A 6 YYMICIPKVLDDSSDFWSVLVEGAQMAAKEY-E-----IKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAADY-EK 78 (289)
T ss_dssp CEEEEECSCCCSSSHHHHHHHHHHHHHHHHH-T-----CEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSCT-TT
T ss_pred cEEEEEeCCCCCCchHHHHHHHHHHHHHHHc-C-----CEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCh-HH
Confidence 47888876432 0456777777776543322 2 12333222101233444 344555556899999887543 33
Q ss_pred hHHHHHHHHHhCCCeEeeCCCCccCC-CCcchhh-hccchhhhhcccCC-C-C-CCEEEEEeCCCCCHH
Q 016960 296 TSHLQEIAEDRGIPSYWIDSEKRIGP-GNKIAYK-LMHGELVEKENWLP-K-G-QITIGITSGASTPDK 359 (380)
Q Consensus 296 T~kL~eia~~~~~~t~~Ie~~~dL~~-~~~~~~~-~~~~~~~~~~~wl~-~-~-~~~VGITAGASTP~~ 359 (380)
....++.+.+.+.|...+.+..+-.. ..-+... ...+.. ..+||. . | .++|++-.|...-.+
T Consensus 79 ~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~--~~~~L~~~~G~~~~i~~i~~~~~~~~ 145 (289)
T 3brs_A 79 TYDAAKEIKDAGIKLIVIDSGMKQDIADITVATDNIQAGIR--IGAVTKNLVRKSGKIGVISFVKNSKT 145 (289)
T ss_dssp THHHHTTTGGGTCEEEEESSCCSSCCCSEEEECCHHHHHHH--HHHHHHHHTSSSCEEEEEESCTTSHH
T ss_pred hHHHHHHHHHCCCcEEEECCCCCCCcceEEEeeChHHHHHH--HHHHHHHHcCCCceEEEEECCCCCcc
Confidence 33445555567889988876432111 0011100 011111 113332 1 4 899999988644333
No 64
>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis}
Probab=55.59 E-value=38 Score=28.62 Aligned_cols=67 Identities=6% Similarity=-0.084 Sum_probs=52.2
Q ss_pred HHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeccCchhHHHHHHHHHHhhCCCeEEE
Q 016960 70 VNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSII 149 (380)
Q Consensus 70 Vv~~L~~~Gv~~v~~~~~~~~~~el~~g~~VIIrAHGv~~~~~~~l~~~g~~viDaTCP~V~kv~~~v~~~~~~Gy~iII 149 (380)
.++.|+++|+.+.= ++ -+-.......++..|+.+++...|....+....+++.-....++.
T Consensus 47 ~l~~L~~~g~~~~i------------------~T-~~~~~~~~~~~~~lgi~~~~~~~~k~~~l~~~~~~~~~~~~~~~~ 107 (176)
T 3mmz_A 47 GIAALRKSGLTMLI------------------LS-TEQNPVVAARARKLKIPVLHGIDRKDLALKQWCEEQGIAPERVLY 107 (176)
T ss_dssp HHHHHHHTTCEEEE------------------EE-SSCCHHHHHHHHHHTCCEEESCSCHHHHHHHHHHHHTCCGGGEEE
T ss_pred HHHHHHHCCCeEEE------------------EE-CcChHHHHHHHHHcCCeeEeCCCChHHHHHHHHHHcCCCHHHEEE
Confidence 68889988876541 11 122456777888889889999999999999999988777788999
Q ss_pred EecCCC
Q 016960 150 HGKYSH 155 (380)
Q Consensus 150 iG~~~H 155 (380)
+||..+
T Consensus 108 vGD~~n 113 (176)
T 3mmz_A 108 VGNDVN 113 (176)
T ss_dssp EECSGG
T ss_pred EcCCHH
Confidence 999864
No 65
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=55.02 E-value=99 Score=28.39 Aligned_cols=131 Identities=11% Similarity=0.011 Sum_probs=69.3
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhH-HHHHHhhhhcCCEEEEEccCCCchh
Q 016960 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (380)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGG~nSSNT 296 (380)
..|+++... ++-.-|..+.+-+.+...+. + -++.++++-= .++| +.+..|.+..+|.+|+.+.
T Consensus 65 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~~---~~~~~~~~~~l~~~~vdGiIi~~~------ 128 (333)
T 3jvd_A 65 ALVGVIVPD-LSNEYYSESLQTIQQDLKAA-G-----YQMLVAEANS---VQAQDVVMESLISIQAAGIIHVPV------ 128 (333)
T ss_dssp CEEEEEESC-SSSHHHHHHHHHHHHHHHHH-T-----CEEEEEECCS---HHHHHHHHHHHHHHTCSEEEECCC------
T ss_pred CEEEEEeCC-CcChHHHHHHHHHHHHHHHC-C-----CEEEEECCCC---hHHHHHHHHHHHhCCCCEEEEcch------
Confidence 478888765 45566777777776643333 2 2233333221 3444 3344454578999999876
Q ss_pred HHHHHHHHHhCCCeEeeCCCCccCCCCcchhhh-ccchhhhhcccC-CCCCCEEEEEeCCCCCHHHHHHHHHHHH
Q 016960 297 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGASTPDKAVEDVLKKVF 369 (380)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~~dL~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGASTP~~lI~eV~~~l~ 369 (380)
++.+.+.+.|...+.+..+-+...-+...- ..+.. --++| ..|.++||+-+|.....+..+....+..
T Consensus 129 ---~~~~~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~--a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 198 (333)
T 3jvd_A 129 ---VGSIAPEGIPMVQLTRGELGPGFPRVLCDDEAGFFQ--LTESVLGGSGMNIAALVGEESLSTTQERMRGISH 198 (333)
T ss_dssp ---TTCCC-CCSCEEEECC----CCSCEEEECHHHHHHH--HHHHHCCSSSCEEEEEESCTTSHHHHHHHHHHHH
T ss_pred ---HHHHhhCCCCEEEECccCCCCCCCEEEEChHHHHHH--HHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHH
Confidence 334456788999998754322211111110 11111 11233 2489999999998655555544444433
No 66
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=54.78 E-value=1.2e+02 Score=27.17 Aligned_cols=136 Identities=13% Similarity=0.096 Sum_probs=71.2
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhHH-HHHHhhhhcCCEEEEEccCCCchh
Q 016960 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNT 296 (380)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-a~~eLa~~~vD~miVVGG~nSSNT 296 (380)
..|+++... ++-.-|..+.+-+.+...+. + -++.++++-- ..++|. .+..|.+..+|.+|+.+...+.
T Consensus 16 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~~--~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-- 84 (303)
T 3kke_A 16 GTIGLIVPD-VNNAVFADMFSGVQMAASGH-S-----TDVLLGQIDA--PPRGTQQLSRLVSEGRVDGVLLQRREDFD-- 84 (303)
T ss_dssp -CEEEEESC-TTSTTHHHHHHHHHHHHHHT-T-----CCEEEEECCS--TTHHHHHHHHHHHSCSSSEEEECCCTTCC--
T ss_pred CEEEEEeCC-CcChHHHHHHHHHHHHHHHC-C-----CEEEEEeCCC--ChHHHHHHHHHHHhCCCcEEEEecCCCCc--
Confidence 468888765 34445777777776543332 2 2333333322 223343 3444544689999999876553
Q ss_pred HHHHHHHHHhCCCeEeeCCCCccCCCCcchhh-hccchhhhhcccC-CCCCCEEEEEeCCCCCHHHHHHHHHHH
Q 016960 297 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYK-LMHGELVEKENWL-PKGQITIGITSGASTPDKAVEDVLKKV 368 (380)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~~dL~~~~~~~~~-~~~~~~~~~~~wl-~~~~~~VGITAGASTP~~lI~eV~~~l 368 (380)
...++.+.+ +.|...+.+..+- ...-+... ...+.. .-++| ..|.++||+.+|...-.+..+....+.
T Consensus 85 ~~~~~~l~~-~iPvV~i~~~~~~-~~~~V~~D~~~~g~~--a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 154 (303)
T 3kke_A 85 DDMLAAVLE-GVPAVTINSRVPG-RVGSVILDDQKGGGI--ATEHLITLGHSRIAFISGTAIHDTAQRRKEGYL 154 (303)
T ss_dssp HHHHHHHHT-TSCEEEESCCCTT-CCCEEEECHHHHHHH--HHHHHHHTTCCSEEEEESCSSCHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCEEEECCcCCC-CCCEEEECcHHHHHH--HHHHHHHCCCCeEEEEeCCCcCccHHHHHHHHH
Confidence 213444445 8999999865432 21111111 011111 11222 248899999999766555444444433
No 67
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=54.16 E-value=54 Score=30.13 Aligned_cols=134 Identities=9% Similarity=0.049 Sum_probs=73.7
Q ss_pred eeEEEEc-CCCChHHHHHHHHHHHHHHhhhc---ccccccccccccccccHHHHHhHHHHHHhhhhcCCEEEEEccCCCc
Q 016960 219 KVGIANQ-TTMLKGETEEIGKLVEKTMMRKF---GVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSS 294 (380)
Q Consensus 219 kv~vvsQ-TT~~~~~~~~i~~~l~~~~~~~~---~~~~~~~~~~~~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGG~nSS 294 (380)
+|+++.= |......+..+.+-++..+.+.- +.....-++.+.|+-|...... +++.+|.. +-.+..|||...|+
T Consensus 7 ~IG~~~p~sG~~~~~g~~~~~g~~~a~~~~N~~ggi~G~~i~l~~~D~~~~~~~~~-~~~~~l~~-~~~v~~iig~~~s~ 84 (364)
T 3lop_A 7 SVIQSLPLSGSQAVTGRALNAGARLYFDWLNLNGGINGETIRLVARDDEQKIEQTV-RNVRDMAR-VDNPVALLTVVGTA 84 (364)
T ss_dssp EEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTCHHHHH-HHHHHHHH-HSCEEEEECCCCHH
T ss_pred EEEEEecCCCcchhccHHHHHHHHHHHHHHHhcCCcCCeEEEEEEeCCCCCHHHHH-HHHHHHHh-hcCcEEEEecCCCH
Confidence 7887654 43444444555544443222210 0011123566788888776554 44566663 33566688999999
Q ss_pred hhHHHHH--HHHHhCCCeEeeCCCC-ccCCCCcchhhh---ccchhhhhcccCC-CCCCEEEEEeCCC
Q 016960 295 NTSHLQE--IAEDRGIPSYWIDSEK-RIGPGNKIAYKL---MHGELVEKENWLP-KGQITIGITSGAS 355 (380)
Q Consensus 295 NT~kL~e--ia~~~~~~t~~Ie~~~-dL~~~~~~~~~~---~~~~~~~~~~wl~-~~~~~VGITAGAS 355 (380)
++..+.+ ++++.+.|.+...+.. ++.. ....|.. -..+.....+|+. .+.++|++..+.+
T Consensus 85 ~~~~~~~~~~~~~~~iP~v~~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~~l~~~g~~~iaii~~~~ 151 (364)
T 3lop_A 85 NVEALMREGVLAEARLPLVGPATGASSMTT-DPLVFPIKASYQQEIDKMITALVTIGVTRIGVLYQED 151 (364)
T ss_dssp HHHHHHHTTHHHHHTCCEESCSCCCGGGGS-CTTEECCSCCHHHHHHHHHHHHHHTTCCCEEEEEETT
T ss_pred HHHhhCchhhHHhcCCcEEEcccCcHhhcc-CCcEEEeCCChHHHHHHHHHHHHHcCCceEEEEEeCc
Confidence 9999999 9999999987765433 2321 1111111 0011111123331 2678999987643
No 68
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=54.12 E-value=62 Score=29.20 Aligned_cols=133 Identities=15% Similarity=0.151 Sum_probs=70.0
Q ss_pred eeEEEEcCCCC-hHHHHHHHHHHHHHHhhh--ccc-ccccccccccccccHHHHHhHHHHHHhhhhcCCEEEEEccCCCc
Q 016960 219 KVGIANQTTML-KGETEEIGKLVEKTMMRK--FGV-ENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSS 294 (380)
Q Consensus 219 kv~vvsQTT~~-~~~~~~i~~~l~~~~~~~--~~~-~~~~~~~~~~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGG~nSS 294 (380)
+|+++.-.|-. ...+..+..-++..+.+. .+- ....-++.+.||-|...... +.+.+|.+.+||++ ||...|+
T Consensus 4 ~IG~~~p~~g~~~~~~~~~~~g~~~a~~~iN~~ggi~G~~l~l~~~d~~~~~~~~~-~~~~~l~~~~v~~i--ig~~~s~ 80 (346)
T 1usg_A 4 KVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGIKGDKLVGVEYDDACDPKQAV-AVANKIVNDGIKYV--IGHLCSS 80 (346)
T ss_dssp EEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTCHHHHH-HHHHHHHHTTCCEE--ECCSSHH
T ss_pred EEEEEeCCCCcchhcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCCCCHHHHH-HHHHHHHhCCCCEE--EcCCCcH
Confidence 67777655432 233444444444322221 010 00111356778877765554 34555654678875 5777788
Q ss_pred hhHHHHHHHHHhCCCeEeeCCCC-ccCC-CCcchhhh---ccchhhhhcccC-CC-CCCEEEEEeCC
Q 016960 295 NTSHLQEIAEDRGIPSYWIDSEK-RIGP-GNKIAYKL---MHGELVEKENWL-PK-GQITIGITSGA 354 (380)
Q Consensus 295 NT~kL~eia~~~~~~t~~Ie~~~-dL~~-~~~~~~~~---~~~~~~~~~~wl-~~-~~~~VGITAGA 354 (380)
++..+.+++++.+.|.+.+.+.. ++.. .....|.. -..+.....+|+ .. +.++|++..+.
T Consensus 81 ~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~i~~i~~~ 147 (346)
T 1usg_A 81 STQPASDIYEDEGILMISPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDK 147 (346)
T ss_dssp HHHHHHHHHHHHTCEEEECCCCCGGGGSSCCSSEEECSCCGGGHHHHHHHHHHHTTCCSSEEEEECS
T ss_pred HHHHHHHHHHHCCCeEEeeCCCChHHhcCCCCcEEeccCChHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 88889999999998887765432 2321 00111111 111112222444 22 78899999874
No 69
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=53.48 E-value=1.3e+02 Score=27.37 Aligned_cols=124 Identities=13% Similarity=0.145 Sum_probs=66.3
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhHHH-HHHhhhhcCCEEEEEccCCCchh
Q 016960 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDA-MYKMVEEKVDLILVVGGWNSSNT 296 (380)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a-~~eLa~~~vD~miVVGG~nSSNT 296 (380)
..|+++... +.-.-|.++++-+.+...+. + -++.++++ ....++|.. +..|.+..+|.+|+.+...+.
T Consensus 63 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~-- 131 (339)
T 3h5o_A 63 RTVLVLIPS-LANTVFLETLTGIETVLDAA-G-----YQMLIGNS--HYDAGQELQLLRAYLQHRPDGVLITGLSHAE-- 131 (339)
T ss_dssp CEEEEEESC-STTCTTHHHHHHHHHHHHHT-T-----CEEEEEEC--TTCHHHHHHHHHHHHTTCCSEEEEECSCCCT--
T ss_pred CEEEEEeCC-CCCHHHHHHHHHHHHHHHHC-C-----CEEEEEeC--CCChHHHHHHHHHHHcCCCCEEEEeCCCCCH--
Confidence 478888764 33345666666665533222 2 22333322 223345543 344444689999999865443
Q ss_pred HHHHHHHHHhCCCeEeeCCCCccCCCCcchhh-hccchhhhhcccC-CCCCCEEEEEeCCCC
Q 016960 297 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYK-LMHGELVEKENWL-PKGQITIGITSGAST 356 (380)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~~dL~~~~~~~~~-~~~~~~~~~~~wl-~~~~~~VGITAGAST 356 (380)
.+.+.+.+.+.|...+.+..+-+.. -+... ...+.. --.+| ..|.++||+..|...
T Consensus 132 -~~~~~l~~~~iPvV~~~~~~~~~~~-~V~~D~~~~~~~--a~~~L~~~G~~~I~~i~~~~~ 189 (339)
T 3h5o_A 132 -PFERILSQHALPVVYMMDLADDGRC-CVGFSQEDAGAA--ITRHLLSRGKRRIGFLGAQLD 189 (339)
T ss_dssp -THHHHHHHTTCCEEEEESCCSSSCC-EEECCHHHHHHH--HHHHHHHTTCCSEEEEEESCC
T ss_pred -HHHHHHhcCCCCEEEEeecCCCCCe-EEEECHHHHHHH--HHHHHHHCCCCeEEEEeCCCC
Confidence 4566677888999988654332221 11110 011111 11222 248999999988764
No 70
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=52.96 E-value=36 Score=30.62 Aligned_cols=115 Identities=14% Similarity=0.118 Sum_probs=70.1
Q ss_pred chhHHHHHHHcCCcceecc-eEEEEe--------------CCCCCcccHHHHHHHHHHHHhh-C---CCCceEEeccccc
Q 016960 6 TSDIIKKLKENGFEYTWGN-VKVKLA--------------ESYGFCWGVERAVQIAYEARKQ-F---PEEKIWITNEIIH 66 (380)
Q Consensus 6 ~~~~~~~~~~~~~~~~~g~-mkI~lA--------------~~~GFC~GV~RAI~~a~~~~~~-~---~~~~Iy~lG~LIH 66 (380)
.+++.+.|++.|+....-+ +++.-. ......|==.+||+...+.+.+ + ++.++|+.|+
T Consensus 18 ~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~~aV~~~~~~l~~~~~~~~~~~i~aVG~--- 94 (254)
T 4es6_A 18 CAALAASLGEAGVHSSSLPLLAIDPLEETPEQRTLMLDLDRYCAVVVVSKPAARLGLERLDRYWPQPPQQTWCSVGA--- 94 (254)
T ss_dssp HHHHHHHHHHTTCEEEECCSCEEEECCCCHHHHHHHHTGGGCSEEEECSHHHHHHHHHHHHHHCSSCCSCEEEESSH---
T ss_pred hHHHHHHHHHCCCcEEEeCCEEEeeCcChHHHHHHHHhccCCCEEEEECHHHHHHHHHHHHHhCCCcccCEEEEECH---
Confidence 4678899999986554432 333211 1223344445556555544432 1 1247999986
Q ss_pred CHHHHHHHHHcCcEEecCCccc------cccc-----cccCCCEEEEcCCCCCHHHHHHHHhcCCcEEec
Q 016960 67 NPTVNKRLEEMAVQNIPVEEGK------KQFD-----VVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDT 125 (380)
Q Consensus 67 N~~Vv~~L~~~Gv~~v~~~~~~------~~~~-----el~~g~~VIIrAHGv~~~~~~~l~~~g~~viDa 125 (380)
..-+.|++.|+...-..++. +.+. ..+...++++|+-+-.+...+.|+++|..|...
T Consensus 95 --~Ta~~L~~~G~~~~~~~~~~~~e~L~~~l~~~~~~~~~~~~vL~~rg~~~r~~L~~~L~~~G~~v~~~ 162 (254)
T 4es6_A 95 --ATAAILEAYGLDVTYPEQGDDSEALLALPAFQDSLRVHDPKVLIMRGEGGREFLAERLRGQGVQVDYL 162 (254)
T ss_dssp --HHHHHHHHHTCCEECCSSCCSHHHHHTCHHHHHHTCSSSCEEEEEECSSCCCHHHHHHHHTTCEEEEE
T ss_pred --HHHHHHHHcCCCcccCCCCCCHHHHHHhHhhcccccCCCCEEEEEcCCccHHHHHHHHHHCCCEEEEE
Confidence 45688999999765322110 1121 233345678999999999999999999987433
No 71
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=52.84 E-value=1.3e+02 Score=27.82 Aligned_cols=131 Identities=15% Similarity=0.142 Sum_probs=66.5
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhHH-HHHHhhhhcCCEEEEEccCCCchh
Q 016960 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNT 296 (380)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-a~~eLa~~~vD~miVVGG~nSSNT 296 (380)
..|+++... ++-.-|..+.+-+.+...+. + -++.++++ ....++|. .+..|.+..+|.+|+.+...+
T Consensus 67 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~--- 134 (348)
T 3bil_A 67 NTIGVIVPS-LINHYFAAMVTEIQSTASKA-G-----LATIITNS--NEDATTMSGSLEFLTSHGVDGIICVPNEEC--- 134 (348)
T ss_dssp -CEEEEESC-SSSHHHHHHHHHHHHHHHHT-T-----CCEEEEEC--TTCHHHHHHHHHHHHHTTCSCEEECCCGGG---
T ss_pred CEEEEEeCC-CCCcHHHHHHHHHHHHHHHc-C-----CEEEEEeC--CCCHHHHHHHHHHHHhCCCCEEEEeCCCCC---
Confidence 468888754 34556777777776643322 2 12333222 22234443 345555568999999875332
Q ss_pred HHHHHHHHHhCCCeEeeCCCCcc-CCCCcchhhh-ccchhhhhcccC-CCCCCEEEEEeCCCCCHHHHH
Q 016960 297 SHLQEIAEDRGIPSYWIDSEKRI-GPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGASTPDKAVE 362 (380)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~~dL-~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGASTP~~lI~ 362 (380)
...++.+.+.+.|...+.+..+- ....-+...- ..+.. --++| ..|.++||+-+|........+
T Consensus 135 ~~~~~~l~~~~iPvV~i~~~~~~~~~~~~V~~D~~~~~~~--a~~~L~~~G~~~I~~i~~~~~~~~~~~ 201 (348)
T 3bil_A 135 ANQLEDLQKQGMPVVLVDRELPGDSTIPTATSNPQPGIAA--AVELLAHNNALPIGYLSGPMDTSTGRE 201 (348)
T ss_dssp HHHHHHHHHC-CCEEEESSCCSCC-CCCEEEEECHHHHHH--HHHHHHHTTCCSEEEECCCTTSHHHHH
T ss_pred hHHHHHHHhCCCCEEEEcccCCCCCCCCEEEeChHHHHHH--HHHHHHHCCCCeEEEEeCCCCCccHHH
Confidence 24455556778999999874321 1101111000 11111 11222 137899999988754333333
No 72
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Probab=52.81 E-value=6.2 Score=34.15 Aligned_cols=78 Identities=14% Similarity=0.280 Sum_probs=54.5
Q ss_pred HhhhhcCCEEEEEccCCCch-hHHHHHHHHHhCCCeEeeCCCCccCCCCcchhhhccchhhhhcccCC--CCCCEEEEEe
Q 016960 276 KMVEEKVDLILVVGGWNSSN-TSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLP--KGQITIGITS 352 (380)
Q Consensus 276 eLa~~~vD~miVVGG~nSSN-T~kL~eia~~~~~~t~~Ie~~~dL~~~~~~~~~~~~~~~~~~~~wl~--~~~~~VGITA 352 (380)
.|-++++-++|+-++-.... ..+|-.+|++.+.|.+++.+-.+|-. |.- .....++||.
T Consensus 61 aI~~gkakLVIIA~D~~p~e~~~~l~~lC~~~~VP~~~v~sk~eLG~------------------a~Gk~~~vs~vaI~~ 122 (144)
T 2jnb_A 61 TLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGR------------------ACGVSRPVIACSVTI 122 (144)
T ss_dssp HHHHTCEEEEEEETTCSCHHHHTTSCSSCGGGCCCCEEESCSHHHHH------------------HHTCSSCCSEEEEEC
T ss_pred HHHhCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEECCHHHHHH------------------HhCCCCceEEEEEEe
Confidence 33334566666666555432 55788899999999999999888753 331 1345699995
Q ss_pred -CCCCCHHHHHHHHHHHHhh
Q 016960 353 -GASTPDKAVEDVLKKVFEI 371 (380)
Q Consensus 353 -GASTP~~lI~eV~~~l~~~ 371 (380)
|.|.=..+++++.+.++.+
T Consensus 123 ~~~s~i~~~~~~~~~~i~~l 142 (144)
T 2jnb_A 123 KEGSQLKQQIQSIQQSIERL 142 (144)
T ss_dssp CTTCTTHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHH
Confidence 7888888888888877654
No 73
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=52.16 E-value=38 Score=26.76 Aligned_cols=44 Identities=18% Similarity=0.253 Sum_probs=34.3
Q ss_pred hhhhcCCEEEEEccCCCchhH-HHHHHHHHhCCCeEee-CCCCccCC
Q 016960 277 MVEEKVDLILVVGGWNSSNTS-HLQEIAEDRGIPSYWI-DSEKRIGP 321 (380)
Q Consensus 277 La~~~vD~miVVGG~nSSNT~-kL~eia~~~~~~t~~I-e~~~dL~~ 321 (380)
|-++++-++|+-.+ -|.|+. +|-..|++.+.|.|.. .|-.||-.
T Consensus 27 i~~gka~lViiA~D-~~~~~~~~i~~~c~~~~ip~~~~~~s~~eLG~ 72 (99)
T 3j21_Z 27 AKTGGAKLIIVAKN-APKEIKDDIYYYAKLSDIPVYEFEGTSVELGT 72 (99)
T ss_dssp HHHTCCSEEEEECC-CCHHHHHHHHHHHHHTTCCEEEECCCSCGGGG
T ss_pred HHcCCccEEEEeCC-CCHHHHHHHHHHHHHcCCCEEEeCCCHHHHHH
Confidence 33467888888888 778877 6667899999998766 99998863
No 74
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=51.60 E-value=30 Score=32.90 Aligned_cols=109 Identities=4% Similarity=-0.064 Sum_probs=61.5
Q ss_pred ccccccccc-HHHHHhHHHHHHhhhhcCCEEEEEccCCCchhHHHHHHHHHhCCCeEeeCCCCccCCCCcchhhhccchh
Q 016960 256 HFISFNTIC-DATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGEL 334 (380)
Q Consensus 256 ~~~~~nTIC-~AT~~RQ~a~~eLa~~~vD~miVVGG~nSSNT~kL~eia~~~~~~t~~Ie~~~dL~~~~~~~~~~~~~~~ 334 (380)
++.+.|+-| ....-.+ ++.+|.. + .++.|||+..|+.+.....++...+.|.+--..+ .++. ....|+....+.
T Consensus 44 ~~~~~D~~~~d~~~a~~-~a~~li~-~-~V~aiiG~~~S~~~~a~~~i~~~~~iP~Is~s~~-~~~~-~~~~~~~~p~~~ 118 (389)
T 3o21_A 44 NYHVDHLDSSNSFSVTN-AFCSQFS-R-GVYAIFGFYDQMSMNTLTSFCGALHTSFVTPSFP-TDAD-VQFVIQMRPALK 118 (389)
T ss_dssp EEEEEECCTTCHHHHHH-HHHHHHT-T-TCSCEEECCCTTTHHHHHHHHHHHTCCEEECSCC-CSSC-CSSEEECSCCSH
T ss_pred EEEEEecCCCChHHHHH-HHHHHHh-c-CcEEEEeCCChhHHHHHHHHhccCCCceeecCCC-CccC-CceEEEEccCHH
Confidence 566889989 5554444 4556663 3 7778999999999999999999998886532222 1221 122222211111
Q ss_pred hhhcccCC-CCCCEEEEEeCCCCCHHHHHHHHHHHH
Q 016960 335 VEKENWLP-KGQITIGITSGASTPDKAVEDVLKKVF 369 (380)
Q Consensus 335 ~~~~~wl~-~~~~~VGITAGASTP~~lI~eV~~~l~ 369 (380)
.....++. -+.++|+|..-.+--....+++.+.+.
T Consensus 119 ~a~~~~~~~~gw~~vaii~d~~~g~~~~~~~~~~~~ 154 (389)
T 3o21_A 119 GAILSLLSYYKWEKFVYLYDTERGFSVLQAIMEAAV 154 (389)
T ss_dssp HHHHHHHHHHTCCEEEEEECSTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEEEcCcHHHHHHHHHHHHhh
Confidence 11112220 156788888722222345555555554
No 75
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=51.42 E-value=36 Score=32.15 Aligned_cols=63 Identities=10% Similarity=-0.010 Sum_probs=40.2
Q ss_pred CceEEecccccCHHHHHHHHHcCcEEecCCcccccccccc-CCCEEEEcCCCCCHH--HHHHHHhcCCcEE
Q 016960 56 EKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVN-KGDVVVLPAFGAAVE--EMVTLNNKNVQIV 123 (380)
Q Consensus 56 ~~Iy~lG~LIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~el~-~g~~VIIrAHGv~~~--~~~~l~~~g~~vi 123 (380)
-.|+.. +.--++...+.|++.|+.+.... +.+.+. .+.-+||.+=|+++. .++.++++|+.|+
T Consensus 29 ~~V~~~-D~~~~~~~~~~L~~~gi~v~~g~----~~~~l~~~~~d~vV~Spgi~~~~p~~~~a~~~gi~v~ 94 (326)
T 3eag_A 29 FEVSGC-DAKMYPPMSTQLEALGIDVYEGF----DAAQLDEFKADVYVIGNVAKRGMDVVEAILNLGLPYI 94 (326)
T ss_dssp CEEEEE-ESSCCTTHHHHHHHTTCEEEESC----CGGGGGSCCCSEEEECTTCCTTCHHHHHHHHTTCCEE
T ss_pred CEEEEE-cCCCCcHHHHHHHhCCCEEECCC----CHHHcCCCCCCEEEECCCcCCCCHHHHHHHHcCCcEE
Confidence 345543 33333556789999999987532 123443 232266667799864 6778899999987
No 76
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=51.34 E-value=5.4 Score=37.61 Aligned_cols=64 Identities=9% Similarity=0.232 Sum_probs=43.9
Q ss_pred cccccccccHHHHHhHHHHHHhhhhcCCEEEEEccCCCchhHHHHHHHHHhCCCeEeeCC-CCccC
Q 016960 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDS-EKRIG 320 (380)
Q Consensus 256 ~~~~~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGG~nSSNT~kL~eia~~~~~~t~~Ie~-~~dL~ 320 (380)
++.+.|+-|+....=..++++|. .+=.+..|||+..|+.+..+..++++.+.|.+.-.+ ..++.
T Consensus 46 elv~~D~~~~~p~~a~~~a~~Li-~~d~V~aiiG~~~S~~~~a~~~~~~~~~vp~i~~~a~~~~~~ 110 (371)
T 4f06_A 46 EFVYRDEVSPNPAQSKALAQELI-VKEKVQYLAGLYFTPNAMAVAPLLQEAKVPMVVMNAATSSIT 110 (371)
T ss_dssp EEEEEECCSSCHHHHHHHHHHHH-HTSCCSEEEECCSHHHHHHHGGGHHHHTCCEEESSCCCGGGG
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH-hcCCCEEEEecccccchHHHHHHHHhhcCCccccccccchhc
Confidence 56678888743333345566776 233345578999999999999999999988765433 34443
No 77
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=51.04 E-value=55 Score=30.90 Aligned_cols=59 Identities=15% Similarity=0.293 Sum_probs=42.4
Q ss_pred ccccccccc-cHHHHHhHHHHHHhhhhcCCEEEEEccCCCchhHHHHHHHHHhCCCeEeeCC
Q 016960 255 EHFISFNTI-CDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDS 315 (380)
Q Consensus 255 ~~~~~~nTI-C~AT~~RQ~a~~eLa~~~vD~miVVGG~nSSNT~kL~eia~~~~~~t~~Ie~ 315 (380)
-++.+.||- |+++.-.+ ++++|.. +-.+..|||+..|+++..+..++++.+.|.+...+
T Consensus 56 i~l~~~D~~~~~~~~a~~-~a~~li~-~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~~ 115 (419)
T 3h5l_A 56 IELVFADTQSKGVDVVIQ-SAQRLID-RDNASALIAGYNLENGTALHDVAADAGVIAMHANT 115 (419)
T ss_dssp EEEEEEECTTCCHHHHHH-HHHHHHH-TTCCSEEECSCCSSCSCHHHHHHHHHTCEEEECCC
T ss_pred EEEEEccCCCCCHHHHHH-HHHHHhh-hcCCeEEEccccchhHHHhHHHHHHcCCeEEEcCc
Confidence 356788886 77765544 4556663 34455667999999999999999999888765433
No 78
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=50.28 E-value=45 Score=30.48 Aligned_cols=116 Identities=10% Similarity=0.060 Sum_probs=70.6
Q ss_pred cchhHHHHHHHcCCcceecc-eEEEE--------------eCCCCCcccHHHHHHHHHHHHhh-C---CCCceEEecccc
Q 016960 5 YTSDIIKKLKENGFEYTWGN-VKVKL--------------AESYGFCWGVERAVQIAYEARKQ-F---PEEKIWITNEII 65 (380)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~g~-mkI~l--------------A~~~GFC~GV~RAI~~a~~~~~~-~---~~~~Iy~lG~LI 65 (380)
..+++.+.|++.|+....-+ +++.- .......|==.+||+...+.+.+ + +..++|+.|+
T Consensus 25 ~a~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~naV~~~~~~l~~~~~~~~~~~i~aVG~-- 102 (269)
T 3re1_A 25 ESAALARVLADAGIFSSSLPLLETEPLPLTPAQRSIIFELLNYSAVIVVSKPAARLAIELIDEVWPQPPMQPWFSVGS-- 102 (269)
T ss_dssp HHHHHHHHHHTTTCEEEECCCCEEEECCCHHHHHHHHHTGGGSSEEEECSHHHHHHHHHHHHHHCSSCCCSCEEESSH--
T ss_pred HHHHHHHHHHHCCCCEEEcCCEEEecCCCcHHHHHHHHhccCCCEEEEECHHHHHHHHHHHHHhCCCcccCEEEEECH--
Confidence 34678899999986554432 23321 12223444445666655554432 1 1247999995
Q ss_pred cCHHHHHHHHHcCcEEecCCc-----cc-cccc-----cccCCCEEEEcCCCCCHHHHHHHHhcCCcEEec
Q 016960 66 HNPTVNKRLEEMAVQNIPVEE-----GK-KQFD-----VVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDT 125 (380)
Q Consensus 66 HN~~Vv~~L~~~Gv~~v~~~~-----~~-~~~~-----el~~g~~VIIrAHGv~~~~~~~l~~~g~~viDa 125 (380)
..-+.|++.|+...-..+ ++ +.+. .++...++++|+-+-.+...+.|+++|..|...
T Consensus 103 ---~Ta~aL~~~G~~~~~~~~~~~~e~L~~~l~l~~~~~~~g~~vLi~rg~~~r~~L~~~L~~~G~~v~~~ 170 (269)
T 3re1_A 103 ---ATGQILLDYGLDASWPEQGDDSEALLDHPRLKQAIAVPGSRVLIMRGNEGRELLAEQLRERGVGVDYL 170 (269)
T ss_dssp ---HHHHHHHHTTCCEECC-------CGGGCHHHHHHHCSSSCEEEEEECSSCCCHHHHHHHHTTCEEEEE
T ss_pred ---HHHHHHHHcCCCcccCCCCCCHHHHHHhhhhcccccCCCCEEEEEccCccHHHHHHHHHHCCCEEEEE
Confidence 566899999997643211 11 1111 233344678999999999999999999987443
No 79
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=50.21 E-value=67 Score=28.44 Aligned_cols=91 Identities=8% Similarity=-0.057 Sum_probs=52.2
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhHH-HHHHhhhhcCCEEEEEccCCCchh
Q 016960 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNT 296 (380)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-a~~eLa~~~vD~miVVGG~nSSNT 296 (380)
.+|+++.... +-.-|..+.+-+.+...+. + -++.++++-=....++|. .+..|....+|.+|+.+...+ ..
T Consensus 6 ~~Igvi~~~~-~~~~~~~~~~g~~~~a~~~-g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~-~~ 77 (304)
T 3o1i_D 6 EKICAIYPHL-KDSYWLSVNYGMVSEAEKQ-G-----VNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPH-AY 77 (304)
T ss_dssp CEEEEEESCS-CSHHHHHHHHHHHHHHHHH-T-----CEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTT-SS
T ss_pred cEEEEEeCCC-CCcHHHHHHHHHHHHHHHc-C-----CeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh-HH
Confidence 4799887654 4566777877776643332 2 234444332211333443 344454468999998865444 22
Q ss_pred HHHHHHHHHhCCCeEeeCCCC
Q 016960 297 SHLQEIAEDRGIPSYWIDSEK 317 (380)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~~ 317 (380)
...++-+. .+.|...+.+..
T Consensus 78 ~~~~~~~~-~~iPvV~~~~~~ 97 (304)
T 3o1i_D 78 EHNLKSWV-GNTPVFATVNQL 97 (304)
T ss_dssp TTTHHHHT-TTSCEEECSSCC
T ss_pred HHHHHHHc-CCCCEEEecCCC
Confidence 23344555 789999996543
No 80
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A*
Probab=50.18 E-value=63 Score=29.41 Aligned_cols=97 Identities=19% Similarity=0.202 Sum_probs=53.2
Q ss_pred cch-hHHHHHHHcCCc-cee----------cceEEEEeCCCCCcccHHHHHHHHHHHHhhCCC--CceEEecccccCHHH
Q 016960 5 YTS-DIIKKLKENGFE-YTW----------GNVKVKLAESYGFCWGVERAVQIAYEARKQFPE--EKIWITNEIIHNPTV 70 (380)
Q Consensus 5 ~~~-~~~~~~~~~~~~-~~~----------g~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~--~~Iy~lG~LIHN~~V 70 (380)
|+| .|+++|+++|.. +.. |.-+|++.--+-++..+.+.|..+...+.+... .++.+..++--+|..
T Consensus 48 f~~~~i~~~l~~~~~~~P~i~~al~~l~~~G~~~ivV~Pl~l~~G~~~~di~~~~~~l~~~~~~~~~i~~~~pl~~~p~~ 127 (269)
T 2xvy_A 48 YTAKMIRAKLRAEGIAAPSPAEALAGMAEEGFTHVAVQSLHTIPGEEFHGLLETAHAFQGLPKGLTRVSVGLPLIGTTAD 127 (269)
T ss_dssp ESCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCCEEEEEECCSSSSHHHHHHHHHHHHHTTCTTSCSEEEEECCSSCSHHH
T ss_pred hhhHHHHHHHHHcCCCCCCHHHHHHHHHHCCCCEEEEEeceeeccHhHHHHHHHHHHHHHhhccCCeEEEeCCCCCCHHH
Confidence 444 567888877632 221 445676665554543344433222111433221 357777788888888
Q ss_pred HHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCH
Q 016960 71 NKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV 109 (380)
Q Consensus 71 v~~L~~~Gv~~v~~~~~~~~~~el~~g~~VIIrAHGv~~ 109 (380)
++.|.++=-..+.. ..++++.||+.+||.+.
T Consensus 128 i~~la~~i~~~~~~--------~~~~~~~lll~~HGs~~ 158 (269)
T 2xvy_A 128 AEAVAEALVASLPA--------DRKPGEPVVFMGHGTPH 158 (269)
T ss_dssp HHHHHHHHHHHSCT--------TCCTTCCEEEEECCCSS
T ss_pred HHHHHHHHHHhchh--------hccCCceEEEEECCCCh
Confidence 77776542111110 01235679999999996
No 81
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=50.14 E-value=1e+02 Score=28.31 Aligned_cols=124 Identities=14% Similarity=0.117 Sum_probs=65.4
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhHHH-HHHhhhhcCCEEEEEccCCCchh
Q 016960 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDA-MYKMVEEKVDLILVVGGWNSSNT 296 (380)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a-~~eLa~~~vD~miVVGG~nSSNT 296 (380)
..|+++... ++-.-|..+.+-+.+...+. .-++.++++ ....++|.. +..|.+..+|.+|+.+...+
T Consensus 69 ~~Ig~i~~~-~~~~~~~~~~~gi~~~a~~~------g~~~~~~~~--~~~~~~~~~~i~~l~~~~vdGiIi~~~~~~--- 136 (344)
T 3kjx_A 69 NLVAVIIPS-LSNMVFPEVLTGINQVLEDT------ELQPVVGVT--DYLPEKEEKVLYEMLSWRPSGVIIAGLEHS--- 136 (344)
T ss_dssp SEEEEEESC-SSSSSHHHHHHHHHHHHTSS------SSEEEEEEC--TTCHHHHHHHHHHHHTTCCSEEEEECSCCC---
T ss_pred CEEEEEeCC-CCcHHHHHHHHHHHHHHHHC------CCEEEEEeC--CCCHHHHHHHHHHHHhCCCCEEEEECCCCC---
Confidence 578888754 34445777777776532222 122322222 123344433 44454468999999875543
Q ss_pred HHHHHHHHHhCCCeEeeCCCCccCCCCcchhh-hccchhhhhcccC-CCCCCEEEEEeCCC
Q 016960 297 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYK-LMHGELVEKENWL-PKGQITIGITSGAS 355 (380)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~~dL~~~~~~~~~-~~~~~~~~~~~wl-~~~~~~VGITAGAS 355 (380)
..+++.+.+.+.|...+.+...-+...-+... ...+.. --++| ..|+++||+..|..
T Consensus 137 ~~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~~~~--a~~~L~~~G~~~I~~i~~~~ 195 (344)
T 3kjx_A 137 EAARAMLDAAGIPVVEIMDSDGKPVDAMVGISHRRAGRE--MAQAILKAGYRRIGFMGTKM 195 (344)
T ss_dssp HHHHHHHHHCSSCEEEEEECSSCCSSEEEEECHHHHHHH--HHHHHHHHTCCSCCEEESST
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCCCEEEECcHHHHHH--HHHHHHHCCCCeEEEEecCc
Confidence 35666777889999988432221111111100 011111 11222 13789999998864
No 82
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=49.63 E-value=14 Score=34.54 Aligned_cols=55 Identities=13% Similarity=0.093 Sum_probs=40.5
Q ss_pred ccccccccccHHHHHhHHHHHHhhh-hcCCEEEEEccCCCchhHHHHHHHHHhCCCeEe
Q 016960 255 EHFISFNTICDATQERQDAMYKMVE-EKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYW 312 (380)
Q Consensus 255 ~~~~~~nTIC~AT~~RQ~a~~eLa~-~~vD~miVVGG~nSSNT~kL~eia~~~~~~t~~ 312 (380)
-++.+.|+-|....-.+ ++.+|.. ..|++ |||+..|+.+..+..++++.+.|.+.
T Consensus 47 i~l~~~D~~~~~~~a~~-~~~~li~~~~v~a--iiG~~~s~~~~a~~~~~~~~~ip~i~ 102 (374)
T 3n0x_A 47 IVVITKDDQSKPDLSKA-ALAEAYQDDGADI--AIGTSSSAAALADLPVAEENKKILIV 102 (374)
T ss_dssp EEEEEEECTTCHHHHHH-HHHHHHHTSCCSE--EEECSSHHHHHHHHHHHHHHTCCEEE
T ss_pred EEEEEecCCCCHHHHHH-HHHHHHHhCCceE--EEcCCCcHHHHHHHHHHHHcCccEEE
Confidence 35678899888765544 4556652 24554 66999999999999999998877553
No 83
>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*
Probab=49.43 E-value=92 Score=29.24 Aligned_cols=94 Identities=7% Similarity=-0.024 Sum_probs=67.9
Q ss_pred HHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHh------
Q 016960 44 QIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNN------ 117 (380)
Q Consensus 44 ~~a~~~~~~~~~~~Iy~lG~LIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~el~~g~~VIIrAHGv~~~~~~~l~~------ 117 (380)
-||...++. +-+|+++- .|+.-.+.|.+.|....++ +.++-.+.-|||..=.-++.+.+.+..
T Consensus 17 ~mA~~L~~~--G~~v~v~d---r~~~~~~~l~~~Ga~~a~s------~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g~~~ 85 (300)
T 3obb_A 17 PMATNLLKA--GYLLNVFD---LVQSAVDGLVAAGASAARS------ARDAVQGADVVISMLPASQHVEGLYLDDDGLLA 85 (300)
T ss_dssp HHHHHHHHT--TCEEEEEC---SSHHHHHHHHHTTCEECSS------HHHHHTTCSEEEECCSCHHHHHHHHHSSSSSTT
T ss_pred HHHHHHHhC--CCeEEEEc---CCHHHHHHHHHcCCEEcCC------HHHHHhcCCceeecCCchHHHHHHHhchhhhhh
Confidence 366666664 34677664 4788999999999998875 344434434667766677777776642
Q ss_pred ---cCCcEEeccCchhHHHHHHHHHHhhCCCeEE
Q 016960 118 ---KNVQIVDTTCPWVSKVWTSVEKHKKGDYTSI 148 (380)
Q Consensus 118 ---~g~~viDaTCP~V~kv~~~v~~~~~~Gy~iI 148 (380)
.|-.|||.|=-.....++.++.+.++|-..+
T Consensus 86 ~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~~l 119 (300)
T 3obb_A 86 HIAPGTLVLECSTIAPTSARKIHAAARERGLAML 119 (300)
T ss_dssp SCCC-CEEEECSCCCHHHHHHHHHHHHTTTCEEE
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence 4677999998888899999999999986655
No 84
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=49.18 E-value=52 Score=26.04 Aligned_cols=70 Identities=13% Similarity=0.208 Sum_probs=46.5
Q ss_pred hhhhcCCEEEEEccCCCchhHHHHHHHHHhCCCeEeeCCCCccCCCCcchhhhccchhhhhcccCCC-CCCEEEEEeCCC
Q 016960 277 MVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPK-GQITIGITSGAS 355 (380)
Q Consensus 277 La~~~vD~miVVGG~nSSNT~kL~eia~~~~~~t~~Ie~~~dL~~~~~~~~~~~~~~~~~~~~wl~~-~~~~VGITAGAS 355 (380)
|-++++-++|+-.+-...-.++|-..|+..+.|.+++.|-.||- .|+-. ....++||
T Consensus 30 i~~gka~lViiA~D~~~~~~~~i~~~c~~~~ip~~~~~s~~eLG------------------~a~Gk~~~~~vai~---- 87 (101)
T 3on1_A 30 VQNGQVTLVILSSDAGIHTKKKLLDKCGSYQIPVKVVGNRQMLG------------------RAIGKHERVVIGVK---- 87 (101)
T ss_dssp HHTTCCSEEEEETTSCHHHHHHHHHHHHHHTCCEEEESCHHHHH------------------HHTTSSCCSEEEEC----
T ss_pred HHcCCCcEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCHHHHH------------------HHhCCcCeEEEEEE----
Confidence 33467777777666655445577788999999999999888885 34411 24567774
Q ss_pred CCHHHHHHHHHHHH
Q 016960 356 TPDKAVEDVLKKVF 369 (380)
Q Consensus 356 TP~~lI~eV~~~l~ 369 (380)
.....+.+++.|.
T Consensus 88 -d~g~a~~i~~~~~ 100 (101)
T 3on1_A 88 -DAGFSRKLAALID 100 (101)
T ss_dssp -CHHHHHHHHHHHH
T ss_pred -CccHHHHHHHHhc
Confidence 5556666666554
No 85
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=49.15 E-value=38 Score=27.37 Aligned_cols=43 Identities=16% Similarity=0.271 Sum_probs=34.1
Q ss_pred hhhhcCCEEEEEccCCCchhH-HHHHHHHHhCCCeEee-CCCCccC
Q 016960 277 MVEEKVDLILVVGGWNSSNTS-HLQEIAEDRGIPSYWI-DSEKRIG 320 (380)
Q Consensus 277 La~~~vD~miVVGG~nSSNT~-kL~eia~~~~~~t~~I-e~~~dL~ 320 (380)
|-++++-++|+-.+- |.|+. +|-.+|++.+.|.|.+ .|-.||-
T Consensus 33 i~~gka~lViiA~D~-~~~~~~~l~~~c~~~~Vp~~~~~~sk~eLG 77 (110)
T 3cpq_A 33 VKHGEGKLVVLAGNI-PKDLEEDVKYYAKLSNIPVYQHKITSLELG 77 (110)
T ss_dssp HHTTCCSEEEECTTC-BHHHHHHHHHHHHHTTCCEEECCSCHHHHH
T ss_pred HHcCCceEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEEcCCHHHHH
Confidence 334678888888888 88877 5778899999998877 8888875
No 86
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=48.84 E-value=1.4e+02 Score=27.12 Aligned_cols=124 Identities=17% Similarity=0.149 Sum_probs=64.0
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhHH-HHHHhhhhcCCEEEEEccCCCchh
Q 016960 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNT 296 (380)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-a~~eLa~~~vD~miVVGG~nSSNT 296 (380)
..|+++... +.-.-|..+.+-+.+...+. + -++.++++ ....++|. .+..|.+..+|.+|+.+...+.
T Consensus 61 ~~Ig~i~~~-~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-- 129 (332)
T 2hsg_A 61 TTVGVIIPD-ISNIFYAELARGIEDIATMY-K-----YNIILSNS--DQNQDKELHLLNNMLGKQVDGIIFMSGNVTE-- 129 (332)
T ss_dssp CEEEEEEC---CCSHHHHHHHHHHHHHHHH-T-----CEEEEEEC--CSHHHHHHHHHHHTSCCSSCCEEECCSSCCH--
T ss_pred CEEEEEeCC-CCCcHHHHHHHHHHHHHHHc-C-----CEEEEEeC--CCChHHHHHHHHHHHhCCCcEEEEecCCCCH--
Confidence 579988754 23345667777766543322 2 12333322 22234443 4455555689999998754432
Q ss_pred HHHHHHHHHhCCCeEeeCCCCccCCCCcchhhh-ccchhhhhcccC-CCCCCEEEEEeCCC
Q 016960 297 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGAS 355 (380)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~~dL~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGAS 355 (380)
..++.+.+.+.|...+.+..+-+...-+...- ..+.. --+|| ..|.++||+-+|..
T Consensus 130 -~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~--a~~~L~~~G~~~I~~i~~~~ 187 (332)
T 2hsg_A 130 -EHVEELKKSPVPVVLAASIESTNQIPSVTIDYEQAAFD--AVQSLIDSGHKNIAFVSGTL 187 (332)
T ss_dssp -HHHHHHTTSSSCEEEESCCCSCTTSCEEEECHHHHHHH--HHHHHHTTTCSCEEEEESCT
T ss_pred -HHHHHHHhCCCCEEEEccccCCCCCCEEEEChHHHHHH--HHHHHHHCCCCEEEEEeCCc
Confidence 34444556788999888753211111111100 11111 11233 24789999999875
No 87
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=48.67 E-value=1.4e+02 Score=26.21 Aligned_cols=93 Identities=13% Similarity=0.082 Sum_probs=54.7
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhccccccccccccccccc-HHHHHhH-HHHHHhhhhcCCEEEEEccCCCch
Q 016960 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTIC-DATQERQ-DAMYKMVEEKVDLILVVGGWNSSN 295 (380)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC-~AT~~RQ-~a~~eLa~~~vD~miVVGG~nSSN 295 (380)
..|+++.-...+-.-|..+.+-+.+...+.- .-++.+..+-. ....++| +.+..|....+|.+|+.+...+.
T Consensus 9 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~-----g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~- 82 (304)
T 3gbv_A 9 YTFACLLPKHLEGEYWTDVQKGIREAVTTYS-----DFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVPQY- 82 (304)
T ss_dssp EEEEEEEECCCTTSHHHHHHHHHHHHHHHTG-----GGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSSGGG-
T ss_pred ceEEEEecCCCCchHHHHHHHHHHHHHHHHH-----hCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCChHH-
Confidence 5788887665345567778777776433320 11233322211 1233444 33455545789999998764333
Q ss_pred hHHHHHHHHHhCCCeEeeCCC
Q 016960 296 TSHLQEIAEDRGIPSYWIDSE 316 (380)
Q Consensus 296 T~kL~eia~~~~~~t~~Ie~~ 316 (380)
...+++.+.+.+.|...+.+.
T Consensus 83 ~~~~~~~~~~~~iPvV~~~~~ 103 (304)
T 3gbv_A 83 TKGFTDALNELGIPYIYIDSQ 103 (304)
T ss_dssp THHHHHHHHHHTCCEEEESSC
T ss_pred HHHHHHHHHHCCCeEEEEeCC
Confidence 345566667788999999874
No 88
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=48.30 E-value=11 Score=34.74 Aligned_cols=65 Identities=14% Similarity=0.145 Sum_probs=47.0
Q ss_pred ccccccccccHHHHHhHHHHHHhhhhcCCEEEEEccCCCchhHHHHHHHHHhCCCeEee-CCCCccCC
Q 016960 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWI-DSEKRIGP 321 (380)
Q Consensus 255 ~~~~~~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGG~nSSNT~kL~eia~~~~~~t~~I-e~~~dL~~ 321 (380)
-++.+.||-|.+..-.+. +++|. .+-.+++|+|+..|+.+.....++++.+.|.+.- -+...|..
T Consensus 49 ielv~~D~~~~p~~a~~~-a~~li-~~~~v~~i~g~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~l~~ 114 (353)
T 4gnr_A 49 IEVVDKDNKSETAEAASV-TTNLV-TQSKVSAVVGPATSGATAAAVANATKAGVPLISPSATQDGLTK 114 (353)
T ss_dssp EEEEEEECTTCHHHHHHH-HHHHH-HTSCCSEEECCCSHHHHHHHHHHHHHTTCCEEESSCCCTTTTT
T ss_pred EEEEEecCCCCHHHHHHH-HHHHH-hhCCceEEeccccCcccceehhhhhccCcceEeeccccccccc
Confidence 356788999988777655 55565 3445567789999999999999999998886543 33444443
No 89
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=48.20 E-value=68 Score=27.30 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=17.4
Q ss_pred ccCCCE-EEEcCCCCCHHHHHHHH
Q 016960 94 VNKGDV-VVLPAFGAAVEEMVTLN 116 (380)
Q Consensus 94 l~~g~~-VIIrAHGv~~~~~~~l~ 116 (380)
+.++|. ++|+.-|-++++.+.++
T Consensus 107 ~~~~DvvI~iS~SG~t~~~i~~~~ 130 (196)
T 2yva_A 107 GHAGDVLLAISTRGNSRDIVKAVE 130 (196)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHH
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHH
Confidence 456776 57889999999876663
No 90
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=47.73 E-value=65 Score=29.15 Aligned_cols=88 Identities=16% Similarity=0.180 Sum_probs=49.7
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhccc-ccccccccccccccHHHHHhHHHHHHhhhhcCCEEEEEccCCCchh
Q 016960 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGV-ENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNT 296 (380)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~-~~~~~~~~~~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGG~nSSNT 296 (380)
..||++ + +++-.-|.++++-+.+.+.+. +- ....-.+.+.||--+...++ +.++.|.+.++|++|++|. +.+
T Consensus 9 ~~IGvi-~-~~~~p~~~~~~~gi~~~l~~~-Gy~~g~~v~l~~~~~~~~~~~~~-~~~~~l~~~~vDgII~~~~---~~~ 81 (302)
T 2qh8_A 9 AKVAVS-Q-IVEHPALDATRQGLLDGLKAK-GYEEGKNLEFDYKTAQGNPAIAV-QIARQFVGENPDVLVGIAT---PTA 81 (302)
T ss_dssp EEEEEE-E-SSCCHHHHHHHHHHHHHHHHT-TCCBTTTEEEEEEECTTCHHHHH-HHHHHHHHTCCSEEEEESH---HHH
T ss_pred cEEEEE-E-eccChhHHHHHHHHHHHHHHc-CCCCCCceEEEEecCCCCHHHHH-HHHHHHHhCCCCEEEECCh---HHH
Confidence 589998 5 466677888888887754443 21 00000222334433333222 3455666678999999874 223
Q ss_pred HHHHHHHHHhCCCeEeeC
Q 016960 297 SHLQEIAEDRGIPSYWID 314 (380)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie 314 (380)
..+.+ ...+.|..++.
T Consensus 82 ~~~~~--~~~~iPvV~~~ 97 (302)
T 2qh8_A 82 QALVS--ATKTIPIVFTA 97 (302)
T ss_dssp HHHHH--HCSSSCEEEEE
T ss_pred HHHHh--cCCCcCEEEEe
Confidence 34433 25678888775
No 91
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=47.66 E-value=36 Score=30.16 Aligned_cols=133 Identities=7% Similarity=-0.043 Sum_probs=71.1
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhHH-HHHHhhhhcCCEEEEEccCCCchh
Q 016960 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNT 296 (380)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-a~~eLa~~~vD~miVVGG~nSSNT 296 (380)
..|+++....++-.-|..+.+-+.+...+. + -++.++++- ...++|. .+..|.+.++|.+|+.+.. .+.
T Consensus 12 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~--~~~~~~~~~~~~l~~~~vdgiIi~~~~--~~~ 81 (289)
T 3g85_A 12 PTIALYWSSDISVNIISRFLRGLQSKLAKQ-N-----YNYNVVICP--YKTDCLHLEKGISKENSFDAAIIANIS--NYD 81 (289)
T ss_dssp CEEEEEEETTSCGGGHHHHHHHHHHHHHHT-T-----TCSEEEEEE--ECTTCGGGCGGGSTTTCCSEEEESSCC--HHH
T ss_pred ceEEEEeccccchHHHHHHHHHHHHHHHHc-C-----CeEEEEecC--CCchhHHHHHHHHhccCCCEEEEecCC--ccc
Confidence 579999875566777888888887643332 2 123333221 1223333 3344445689999998653 222
Q ss_pred HHHHHHHHHhCCCeEeeCCCCccCCCCcchhhh-ccchhhhhcccC-CCCCCEEEEEeCCCCCHHHHHHHH
Q 016960 297 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGASTPDKAVEDVL 365 (380)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~~dL~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGASTP~~lI~eV~ 365 (380)
..+.+.. +.+.|...+.+..+ ...-+...- ..+.. ..++| ..|.++||+..|.+......+...
T Consensus 82 ~~~~~~~-~~~iPvV~~~~~~~--~~~~V~~D~~~~~~~--a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~ 147 (289)
T 3g85_A 82 LEYLNKA-SLTLPIILFNRLSN--KYSSVNVDNYKMGEK--ASLLFAKKRYKSAAAILTESLNDAMDNRNK 147 (289)
T ss_dssp HHHHHHC-CCSSCEEEESCCCS--SSEEEEECHHHHHHH--HHHHHHHTTCCBCEEEECCCSSHHHHHHHH
T ss_pred HHHHHhc-cCCCCEEEECCCCC--CCCEEEeCHHHHHHH--HHHHHHHcCCCEEEEEeCCcccccHHHHHH
Confidence 3444433 56789999987532 211111000 11111 11222 247899999998765544444433
No 92
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=47.39 E-value=1.5e+02 Score=26.07 Aligned_cols=89 Identities=13% Similarity=0.146 Sum_probs=52.0
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhH-HHHHHhhhhcCCEEEEEccCCCchh
Q 016960 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (380)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGG~nSSNT 296 (380)
..|+++... +.-.-|..+.+-+.+...+. + -++.++++- ...++| +.+..|.+..+|.+|+.+... +..
T Consensus 3 ~~Ig~i~~~-~~~~~~~~~~~gi~~~~~~~-g-----~~~~~~~~~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~-~~~ 72 (290)
T 2fn9_A 3 GKMAIVIST-LNNPWFVVLAETAKQRAEQL-G-----YEATIFDSQ--NDTAKESAHFDAIIAAGYDAIIFNPTDA-DGS 72 (290)
T ss_dssp CEEEEEESC-SSSHHHHHHHHHHHHHHHHT-T-----CEEEEEECT--TCHHHHHHHHHHHHHTTCSEEEECCSCT-TTT
T ss_pred eEEEEEeCC-CCChHHHHHHHHHHHHHHHc-C-----CEEEEeCCC--CCHHHHHHHHHHHHHcCCCEEEEecCCh-HHH
Confidence 368888754 34456777777776543322 2 233333331 223344 345555556899999886543 333
Q ss_pred HHHHHHHHHhCCCeEeeCCC
Q 016960 297 SHLQEIAEDRGIPSYWIDSE 316 (380)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~ 316 (380)
..+++.+.+.+.|...+.+.
T Consensus 73 ~~~~~~~~~~~iPvV~~~~~ 92 (290)
T 2fn9_A 73 IANVKRAKEAGIPVFCVDRG 92 (290)
T ss_dssp HHHHHHHHHTTCCEEEESSC
T ss_pred HHHHHHHHHCCCeEEEEecC
Confidence 34556666788999988864
No 93
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=47.08 E-value=12 Score=35.28 Aligned_cols=111 Identities=6% Similarity=-0.039 Sum_probs=61.8
Q ss_pred cccccccccHHHHHhHHHHHHhhhhcCCEEEEEccCCCchhHHHHHHHHHhCCCeEeeCCCCccCCCCcchhhhccchhh
Q 016960 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELV 335 (380)
Q Consensus 256 ~~~~~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGG~nSSNT~kL~eia~~~~~~t~~Ie~~~dL~~~~~~~~~~~~~~~~ 335 (380)
++.+.|+-|.-...-..++.+|.. + .+..|||+..|+.+..+..++.+.+.|-+--.... .+ .....|+....+..
T Consensus 35 ~~~~~d~~~~d~~~a~~~~~~li~-~-~V~aiiG~~~S~~~~av~~~~~~~~ip~is~~~~~-~~-~~~~~~~~~p~~~~ 110 (376)
T 3hsy_A 35 TPHIDNLEVANSFAVTNAFCSQFS-R-GVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPT-DG-THPFVIQMRPDLKG 110 (376)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHH-T-TCSEEEECCCTTTHHHHHHHHHHHTCEEEECSCCC-CS-CCTTEEECSCCCHH
T ss_pred EEEEeecCCCChHHHHHHHHHHHh-c-CcEEEECCCchhHHHHHHHHhccCcCceeecCCCC-cc-cCCceEEeCccHHH
Confidence 344667777444444455566663 3 56779999999999999999999987755333322 11 11122222111111
Q ss_pred hhcccCC-CCCCEEEEEeCCCCCHHHHHHHHHHHHh
Q 016960 336 EKENWLP-KGQITIGITSGASTPDKAVEDVLKKVFE 370 (380)
Q Consensus 336 ~~~~wl~-~~~~~VGITAGASTP~~lI~eV~~~l~~ 370 (380)
....++. -+.++|+|..-..-.....+.+.+.+.+
T Consensus 111 a~~~~~~~~gw~~vaii~d~~~g~~~~~~~~~~~~~ 146 (376)
T 3hsy_A 111 ALLSLIEYYQWDKFAYLYDSDRGLSTLQAVLDSAAE 146 (376)
T ss_dssp HHHHHHHHTTCCEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEEEeCchhHHHHHHHHHHhhh
Confidence 1111210 1678899887323334456666666554
No 94
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=46.44 E-value=21 Score=32.56 Aligned_cols=58 Identities=21% Similarity=0.312 Sum_probs=42.1
Q ss_pred cccccccccHHHHHhHHHHHHhhhh-cCCEEEEEccCCCchhHHHHHHHHHhCCCeEeeCCC
Q 016960 256 HFISFNTICDATQERQDAMYKMVEE-KVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE 316 (380)
Q Consensus 256 ~~~~~nTIC~AT~~RQ~a~~eLa~~-~vD~miVVGG~nSSNT~kL~eia~~~~~~t~~Ie~~ 316 (380)
++.+.|+-|......+ ++.+|... .||++ ||...|+.+..+.+++++.+.|.+.....
T Consensus 44 ~l~~~d~~~~~~~~~~-~~~~l~~~~~v~~i--ig~~~s~~~~~~~~~~~~~~ip~v~~~~~ 102 (362)
T 3snr_A 44 KIIVLDDGGDPTAATT-NARRFVTESKADVI--MGSSVTPPSVAISNVANEAQIPHIALAPL 102 (362)
T ss_dssp EEEEEECTTCHHHHHH-HHHHHHHTSCCSEE--EECSSHHHHHHHHHHHHHHTCCEEESSCC
T ss_pred EEEEecCCCCHHHHHH-HHHHHHhccCceEE--EcCCCcHHHHHHHHHHHHcCccEEEecCC
Confidence 4567788887765544 45556533 57764 57788888999999999999998877654
No 95
>2kkn_A Uncharacterized protein; protein phosphatase 2A homologue, structural genomics, PSI- 2, protein structure initiative; NMR {Thermotoga maritima}
Probab=46.40 E-value=65 Score=27.66 Aligned_cols=83 Identities=10% Similarity=0.001 Sum_probs=48.9
Q ss_pred CceEEecccccCHHHHHHHHHc--CcEEecCCccccc-cccccC------CCEEEEcCCCCCHHHHHHHHhcCCcEEecc
Q 016960 56 EKIWITNEIIHNPTVNKRLEEM--AVQNIPVEEGKKQ-FDVVNK------GDVVVLPAFGAAVEEMVTLNNKNVQIVDTT 126 (380)
Q Consensus 56 ~~Iy~lG~LIHN~~Vv~~L~~~--Gv~~v~~~~~~~~-~~el~~------g~~VIIrAHGv~~~~~~~l~~~g~~viDaT 126 (380)
..|+.+|+++. +.+++.|++. .+.+|...-+... +..+|. +..-|+=.||-++..
T Consensus 52 D~ii~~GD~~~-~~~~~~l~~~~~~v~~V~GNhD~~~~~~~lp~~~~~~~~g~~i~l~HG~~~~~--------------- 115 (178)
T 2kkn_A 52 DGVIGLGDYVD-LDTVILLEKFSKEFYGVHGNMDYPDVKEHLPFSKVLLVEGVTIGMCHGWGAPW--------------- 115 (178)
T ss_dssp SEEEESSCBSC-HHHHHHHHHHTSSEEECCCSSSCGGGGGTSCSCEEEEETTEEEEECCSCCCHH---------------
T ss_pred CEEEECCCCCC-HHHHHHHHhcCCCEEEEECCCCcHHHHhhCCcceEEEECCEEEEEECCCCCCC---------------
Confidence 57999999987 5788999887 4666654322111 223332 223356678864210
Q ss_pred CchhHHHHHHHHHHhhCCCeEEEEecCCCceee
Q 016960 127 CPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETV 159 (380)
Q Consensus 127 CP~V~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~ 159 (380)
.....+.+..+.+..+++.|+...|.+.
T Consensus 116 -----~~~~~~~~~~~~~~d~vi~GHtH~~~~~ 143 (178)
T 2kkn_A 116 -----DLKDRLLKVFNEKPQVILFGHTHEPEDT 143 (178)
T ss_dssp -----HHHHHHHHHSSSCCSEEECCSCSSCCEE
T ss_pred -----CHHHHHHHHhccCCCEEEECccCCCCeE
Confidence 0111222222378899999988878765
No 96
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=46.34 E-value=1.3e+02 Score=26.47 Aligned_cols=131 Identities=15% Similarity=0.079 Sum_probs=69.7
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhccccccccc-ccccccccHHHHHhHHH-HHHhhhhcCCEEEEEccCCCch
Q 016960 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEH-FISFNTICDATQERQDA-MYKMVEEKVDLILVVGGWNSSN 295 (380)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~-~~~~nTIC~AT~~RQ~a-~~eLa~~~vD~miVVGG~nSSN 295 (380)
..|+++... ++-.-|..+.+-+.+...+. + -+ +.++++- ...++|.. +..|.+..+|.+|+.+ +.
T Consensus 11 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~~--~~~~~~~~~~~~l~~~~vdgiIi~~----~~ 77 (277)
T 3hs3_A 11 KMIGIIIPD-LNNRFYAQIIDGIQEVIQKE-G-----YTALISFSTN--SDVKKYQNAIINFENNNVDGIITSA----FT 77 (277)
T ss_dssp CEEEEEESC-TTSHHHHHHHHHHHHHHHHT-T-----CEEEEEECSS--CCHHHHHHHHHHHHHTTCSEEEEEC----CC
T ss_pred CEEEEEeCC-CCChhHHHHHHHHHHHHHHC-C-----CCEEEEEeCC--CChHHHHHHHHHHHhCCCCEEEEcc----hH
Confidence 579988765 34556777777776643332 1 22 2232222 12344433 4445456899999998 11
Q ss_pred hHHHHHHHHHhCCCeEeeCCC-CccCCCCcchhh-hccchhhhhcccCCCCCCEEEEEeCCCCCHHHHHHHHHHH
Q 016960 296 TSHLQEIAEDRGIPSYWIDSE-KRIGPGNKIAYK-LMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKV 368 (380)
Q Consensus 296 T~kL~eia~~~~~~t~~Ie~~-~dL~~~~~~~~~-~~~~~~~~~~~wl~~~~~~VGITAGASTP~~lI~eV~~~l 368 (380)
++-+.+.+.|...+.+. -+-... -+... ...+...- ++|-.|.++||+..|...-....+....+.
T Consensus 78 ----~~~~~~~~iPvV~~~~~~~~~~~~-~V~~D~~~~g~~a~--~~L~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 145 (277)
T 3hs3_A 78 ----IPPNFHLNTPLVMYDSANINDDIV-RIVSNNTKGGKESI--KLLSKKIEKVLIQHWPLSLPTIRERIEAMT 145 (277)
T ss_dssp ----CCTTCCCSSCEEEESCCCCCSSSE-EEEECHHHHHHHHH--HTSCTTCCEEEEEESCTTSHHHHHHHHHHH
T ss_pred ----HHHHHhCCCCEEEEcccccCCCCE-EEEEChHHHHHHHH--HHHHhCCCEEEEEeCCCcCccHHHHHHHHH
Confidence 22234678899999876 221110 01100 01122211 222258999999999765555544444443
No 97
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=45.68 E-value=17 Score=33.31 Aligned_cols=74 Identities=15% Similarity=0.204 Sum_probs=42.4
Q ss_pred cCCEEEEEccCCCchhHHHHHHHHHhCCCeEeeCCCCccCCCCcchhhhccchhhhhcccCC----CCCCEEEEEeCCCC
Q 016960 281 KVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLP----KGQITIGITSGAST 356 (380)
Q Consensus 281 ~vD~miVVGG~nSSNT~kL~eia~~~~~~t~~Ie~~~dL~~~~~~~~~~~~~~~~~~~~wl~----~~~~~VGITAGAST 356 (380)
.+|++|..-|...-| ..+++.|+ .+.+.-.+++++ ++. -+|| .+.-+||||+|...
T Consensus 91 ~adLVIaAT~d~~~N-~~I~~~ak-~gi~VNvvD~p~-~~~-----------------f~~Paiv~rg~l~iaIST~G~s 150 (223)
T 3dfz_A 91 NVFFIVVATNDQAVN-KFVKQHIK-NDQLVNMASSFS-DGN-----------------IQIPAQFSRGRLSLAISTDGAS 150 (223)
T ss_dssp SCSEEEECCCCTHHH-HHHHHHSC-TTCEEEC------CCS-----------------EECCEEEEETTEEEEEECTTSC
T ss_pred CCCEEEECCCCHHHH-HHHHHHHh-CCCEEEEeCCcc-cCe-----------------EEEeeEEEeCCEEEEEECCCCC
Confidence 588877665544333 45666665 655543333332 222 4444 36789999998877
Q ss_pred CHHHHHHHHHHHHhhhhhh
Q 016960 357 PDKAVEDVLKKVFEIKREE 375 (380)
Q Consensus 357 P~~lI~eV~~~l~~~~~~~ 375 (380)
| .+-..+-+.|.+..|++
T Consensus 151 P-~la~~iR~~ie~~lp~~ 168 (223)
T 3dfz_A 151 P-LLTKRIKEDLSSNYDES 168 (223)
T ss_dssp H-HHHHHHHHHHHHHSCTH
T ss_pred c-HHHHHHHHHHHHHccHH
Confidence 7 46666666676655544
No 98
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=45.21 E-value=23 Score=32.60 Aligned_cols=93 Identities=19% Similarity=0.243 Sum_probs=55.4
Q ss_pred ceeEEEEcCCCC-hHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhHHHHHHhhhh-cCCEEEEEccCCCch
Q 016960 218 VKVGIANQTTML-KGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEE-KVDLILVVGGWNSSN 295 (380)
Q Consensus 218 ~kv~vvsQTT~~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~eLa~~-~vD~miVVGG~nSSN 295 (380)
-+|+++.-.|=. ......+..-++..+.+. ....-++.+.|+-|......+ .+++|... .||+ |||...|+.
T Consensus 28 i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i---~G~~i~l~~~d~~~~~~~~~~-~~~~l~~~~~v~~--iig~~~s~~ 101 (386)
T 3sg0_A 28 IKIGITMSASGPGAALGQPQSKTVAALPKEI---GGEKVTYFALDDESDPTKAAQ-NARKLLSEEKVDV--LIGSSLTPV 101 (386)
T ss_dssp EEEEEEECCSSTTHHHHHHHHHHGGGSCSEE---TTEEEEEEEEECTTCHHHHHH-HHHHHHHTSCCSE--EECCSSHHH
T ss_pred eEEEEEeccCCchhhhcHHHHHHHHHHHHHc---CCEEEEEEEecCCCCHHHHHH-HHHHHHhhcCceE--EECCCCchh
Confidence 378877654433 333344444433211110 001134567788887765544 45556533 4665 558888889
Q ss_pred hHHHHHHHHHhCCCeEeeCCC
Q 016960 296 TSHLQEIAEDRGIPSYWIDSE 316 (380)
Q Consensus 296 T~kL~eia~~~~~~t~~Ie~~ 316 (380)
+..+.+++++.+.|.+.....
T Consensus 102 ~~~~~~~~~~~~ip~v~~~~~ 122 (386)
T 3sg0_A 102 SLPLIDIAAEAKTPLMTMAAA 122 (386)
T ss_dssp HHHHHHHHHHTTCCEEECCCC
T ss_pred HHHHHHHHHhcCCeEEEecCC
Confidence 999999999999998877653
No 99
>2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich, structural genomics, structural genomics consortium, SGC, protein transport; 2.20A {Cryptosporidium parvum} SCOP: d.159.1.7
Probab=45.00 E-value=54 Score=28.82 Aligned_cols=66 Identities=14% Similarity=0.013 Sum_probs=34.6
Q ss_pred HcCCcceecceEEEEeCCCCCccc---HHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcC--cEEecC
Q 016960 15 ENGFEYTWGNVKVKLAESYGFCWG---VERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMA--VQNIPV 84 (380)
Q Consensus 15 ~~~~~~~~g~mkI~lA~~~GFC~G---V~RAI~~a~~~~~~~~~~~Iy~lG~LIHN~~Vv~~L~~~G--v~~v~~ 84 (380)
.++.+..-++|+|.+..-.=.+.. ..+++ .+.+++.....|+.+|+|++ +.+.+.|++.+ +.+|..
T Consensus 16 ~~~~~~~~m~m~i~~iSD~H~~~~~~~l~~~l---~~~~~~~~~D~vi~~GDl~~-~~~l~~l~~~~~~v~~V~G 86 (215)
T 2a22_A 16 PRGSSSTDFGDLVLLIGDLKIPYGAKELPSNF---RELLATDKINYVLCTGNVCS-QEYVEMLKNITKNVYIVSG 86 (215)
T ss_dssp -------CCCEEEEEECCCCTTTTCSSCCGGG---HHHHHCTTCCEEEECSCCCC-HHHHHHHHHHCSCEEECCC
T ss_pred cCCCCccccCcEEEEEecCCCCCChHHHHHHH---HHHHhcCCCCEEEECCCCCC-HHHHHHHHHcCCCEEEecC
Confidence 344444445688766543322332 12222 22222222357999999996 78899999987 555654
No 100
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=44.85 E-value=68 Score=29.92 Aligned_cols=89 Identities=11% Similarity=0.036 Sum_probs=53.6
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhHHHHHHhhhhcCCEEEEEcc-----CCC
Q 016960 219 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGG-----WNS 293 (380)
Q Consensus 219 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGG-----~nS 293 (380)
+||++.=.|....-++--++.+.. .-+.....-++...|+-|++.+--+.++++|. .+ .+..|+|+ ..|
T Consensus 7 ~IG~i~~~s~~~~~~~lAv~~iN~----~~~~~~~~l~~~~~d~~~d~~~a~~~~~~~Li-~~-~V~aiiG~~~~~~~~s 80 (384)
T 3qek_A 7 NIGAVLSTKKHEQIFREAVNQANK----RHFTRKIQLQATSVTHRPNAIQMALSVCEDLI-SS-QVYAILVSHPPAPTDH 80 (384)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHH----HSCCSSEEEEEEEEECCSSHHHHHHHHHHHTG-GG-TEEEEEECC-------
T ss_pred EEeEEeeCchHHHHHHHHHHHHhc----cccCCceEEEEEEecccCCHHHHHHHHHHHHH-Hc-CceEEEEecCCCCccc
Confidence 788776555333333333333332 21110011234467889998888888888887 45 78999995 456
Q ss_pred chhHHHHHHHHHhCCCeEee
Q 016960 294 SNTSHLQEIAEDRGIPSYWI 313 (380)
Q Consensus 294 SNT~kL~eia~~~~~~t~~I 313 (380)
+.+.....++...+.|..--
T Consensus 81 ~~~~a~~~~~~~~~iP~is~ 100 (384)
T 3qek_A 81 LTPTPISYTAGFYRIPVIGL 100 (384)
T ss_dssp -CCHHHHHHHHTTTCCEEES
T ss_pred hhHHHHHHHHhcCCCCEEec
Confidence 66778889999888886543
No 101
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=44.73 E-value=1.7e+02 Score=25.95 Aligned_cols=124 Identities=19% Similarity=0.158 Sum_probs=65.7
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhH-HHHHHhhhhcCCEEEEEccCCCchh
Q 016960 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (380)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGG~nSSNT 296 (380)
..|+++... +.-.-|..+.+-+.+...+. + -++.++++ ....++| +.+..|.+..+|.+|+.+...+
T Consensus 17 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~--- 84 (289)
T 2fep_A 17 TTVGVIIPD-ISSIFYSELARGIEDIATMY-K-----YNIILSNS--DQNMEKELHLLNTMLGKQVDGIVFMGGNIT--- 84 (289)
T ss_dssp CEEEEEESC-TTSHHHHHHHHHHHHHHHHT-T-----CEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECCSCCC---
T ss_pred CeEEEEeCC-CCCchHHHHHHHHHHHHHHc-C-----CEEEEEeC--CCCHHHHHHHHHHHHhCCCCEEEEecCCCC---
Confidence 579988754 44556777777776643322 2 22333322 1223344 3345555568999999886433
Q ss_pred HHHHHHHHHhCCCeEeeCCCCccCCCCcchhh-hccchhhhhcccC-CCCCCEEEEEeCCC
Q 016960 297 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYK-LMHGELVEKENWL-PKGQITIGITSGAS 355 (380)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~~dL~~~~~~~~~-~~~~~~~~~~~wl-~~~~~~VGITAGAS 355 (380)
...++.+.+.+.|...+.+..+-+...-+... ...+.. -.+|| ..|.++||+..|..
T Consensus 85 ~~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~--a~~~L~~~G~~~I~~i~~~~ 143 (289)
T 2fep_A 85 DEHVAEFKRSPVPIVLAASVEEQEETPSVAIDYEQAIYD--AVKLLVDKGHTDIAFVSGPM 143 (289)
T ss_dssp HHHHHHHHHSSSCEEEESCCCTTCCSCEEECCHHHHHHH--HHHHHHHTTCSSEEEEESCT
T ss_pred HHHHHHHHhcCCCEEEEccccCCCCCCEEEECcHHHHHH--HHHHHHHCCCCeEEEEeCCc
Confidence 23344445788999999875321111111100 011111 11233 13789999998875
No 102
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=44.51 E-value=72 Score=29.60 Aligned_cols=121 Identities=15% Similarity=0.055 Sum_probs=61.9
Q ss_pred ceeEEEEcCC----CChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhHH-HHHHhhhhcCCEEEEEccCC
Q 016960 218 VKVGIANQTT----MLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWN 292 (380)
Q Consensus 218 ~kv~vvsQTT----~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-a~~eLa~~~vD~miVVGG~n 292 (380)
..|+++.-.. +.-.-|..+++-+.+... ..++.++.+--.. .++|. .+..|....+|.+|+.+...
T Consensus 69 ~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~--------g~~~~~~~~~~~~-~~~~~~~~~~l~~~~vdGiIi~~~~~ 139 (366)
T 3h5t_A 69 GAIGVLLTEDLTYAFEDMASVDFLAGVAQAAG--------DTQLTLIPASPAS-SVDHVSAQQLVNNAAVDGVVIYSVAK 139 (366)
T ss_dssp CEEEEEESSCTTHHHHSHHHHHHHHHHHHHSS--------SCEEEEEECCCCT-TCCHHHHHHHHHTCCCSCEEEESCCT
T ss_pred CEEEEEecCCccccccCHHHHHHHHHHHHHHh--------hCCEEEEEcCCCc-cHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 4799887664 233456677776665322 1122222211111 11343 34444456899999997632
Q ss_pred CchhHHHHHHHHHhCCCeEeeCCCCccCCCCcchhh-hccchhhhhcccC-CCCCCEEEEEe
Q 016960 293 SSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYK-LMHGELVEKENWL-PKGQITIGITS 352 (380)
Q Consensus 293 SSNT~kL~eia~~~~~~t~~Ie~~~dL~~~~~~~~~-~~~~~~~~~~~wl-~~~~~~VGITA 352 (380)
+ . .+++.+.+.+.|...|++..+-+...-+... ...+.. --++| ..|+++||+.+
T Consensus 140 ~--~-~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~~~~--a~~~L~~~G~r~I~~i~ 196 (366)
T 3h5t_A 140 G--D-PHIDAIRARGLPAVIADQPAREEGMPFIAPNNRKAIAP--AAQALIDAGHRKIGILS 196 (366)
T ss_dssp T--C-HHHHHHHHHTCCEEEESSCCSCTTCCEEEECHHHHTHH--HHHHHHHTTCCSEEEEE
T ss_pred C--h-HHHHHHHHCCCCEEEECCccCCCCCCEEEeChHHHHHH--HHHHHHHCCCCcEEEEe
Confidence 2 2 4455556778999999875432221111111 011111 11222 24889999988
No 103
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=44.48 E-value=54 Score=30.06 Aligned_cols=95 Identities=20% Similarity=0.298 Sum_probs=58.0
Q ss_pred ceeEEEEcCC-CChHHHHHHHHHHHHHHhhhcc-cccccccccccccccHHHHHhHHHHHHhhh-hcCCEEEEEccCCCc
Q 016960 218 VKVGIANQTT-MLKGETEEIGKLVEKTMMRKFG-VENVNEHFISFNTICDATQERQDAMYKMVE-EKVDLILVVGGWNSS 294 (380)
Q Consensus 218 ~kv~vvsQTT-~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~~~nTIC~AT~~RQ~a~~eLa~-~~vD~miVVGG~nSS 294 (380)
-+|+++.-.| .....+..+..-++..+.+.-+ .....-++.+.|+-|...... +.+.+|.. ..||+ |||...|+
T Consensus 17 i~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~ng~~~g~~~~l~~~d~~~~~~~~~-~~~~~l~~~~~v~~--iig~~~s~ 93 (375)
T 4evq_A 17 LKVGLLLPYSGTYAPLGEAITRGLELYVQSQGGKLGGRSISFVKVDDESAPPKAT-ELTTKLIQSEKADV--LIGTVHSG 93 (375)
T ss_dssp EEEEEEECSSSTTHHHHHHHHHHHHHHHHHTTTEETTEEEEEEEEECTTCHHHHH-HHHHCCCCCSCCSE--EEECSSHH
T ss_pred eEEEEEeCCCCcchhcCHHHHHHHHHHHHHhCCCcCCEEEEEEEecCCCCHHHHH-HHHHHHHhcCCceE--EEcCCccH
Confidence 4788876443 3344455565555543332210 000113566778877765443 45566663 25655 67888899
Q ss_pred hhHHHHHHHHHhCCCeEeeCC
Q 016960 295 NTSHLQEIAEDRGIPSYWIDS 315 (380)
Q Consensus 295 NT~kL~eia~~~~~~t~~Ie~ 315 (380)
.+..+.+++++.+.|.+...+
T Consensus 94 ~~~~~~~~~~~~~iP~v~~~~ 114 (375)
T 4evq_A 94 VAMAMVKIAREDGIPTIVPNA 114 (375)
T ss_dssp HHHHHHHHHHHHCCCEEESSC
T ss_pred HHHHHHHHHHHcCceEEecCC
Confidence 999999999999999876653
No 104
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=44.28 E-value=90 Score=28.60 Aligned_cols=114 Identities=12% Similarity=0.123 Sum_probs=66.9
Q ss_pred hhHHHHHHHcCCcceecc-eEEEEe-------------CCCCCcccHHHHHHHHHHHHhh--------------CCCCce
Q 016960 7 SDIIKKLKENGFEYTWGN-VKVKLA-------------ESYGFCWGVERAVQIAYEARKQ--------------FPEEKI 58 (380)
Q Consensus 7 ~~~~~~~~~~~~~~~~g~-mkI~lA-------------~~~GFC~GV~RAI~~a~~~~~~--------------~~~~~I 58 (380)
+++.+.|++.|+....-+ ++|.-. ...+..|==.+||+...+.+.+ .++.++
T Consensus 38 ~~l~~~L~~~G~~~~~~P~i~i~~~~~~~l~~~l~~~~~~d~lifTS~naV~~~~~~l~~~~~~~~~~~d~~~~l~~~~i 117 (286)
T 1jr2_A 38 DPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLIFTSPRAVEAAELCLEQNNKTEVWERSLKEKWNAKSV 117 (286)
T ss_dssp CHHHHHHHTTTCEEEEEECEEEEECCHHHHHHHHTCGGGCSEEEECCHHHHHHHHHHHHHTTCHHHHHHHTHHHHHHSEE
T ss_pred cHHHHHHHHCCCceEEEeeEEEecCCHHHHHHHHhCcccccEEEEeCHHHHHHHHHHHHhccccccchhhHHHHhccCcE
Confidence 788999999997654433 333311 1122333334444444333221 113579
Q ss_pred EEecccccCHHHHHHHHHcCcEEecCCcc-ccc----c--ccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEec
Q 016960 59 WITNEIIHNPTVNKRLEEMAVQNIPVEEG-KKQ----F--DVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDT 125 (380)
Q Consensus 59 y~lG~LIHN~~Vv~~L~~~Gv~~v~~~~~-~~~----~--~el~~g~~VIIrAHGv~~~~~~~l~~~g~~viDa 125 (380)
|+.|+ ..-+.|++.|+..+-.... .+. + ...+...++++|+-+-.+...+.|+++|..|...
T Consensus 118 ~aVG~-----~Ta~aL~~~G~~~~~p~~~~ae~L~~~l~~~~~~g~~vLi~rg~~~r~~L~~~L~~~G~~v~~~ 186 (286)
T 1jr2_A 118 YVVGN-----ATASLVSKIGLDTEGETCGNAEKLAEYICSRESSALPLLFPCGNLKREILPKALKDKGIAMESI 186 (286)
T ss_dssp EECSH-----HHHHHHHHTTCCCSCCSCSSHHHHHHHHHTSCCCSSCEEEEESCGGGCCHHHHHHTTTCCEEEE
T ss_pred EEECH-----HHHHHHHHcCCCcCCCCccCHHHHHHHHHhcccCCCeEEEECChhhHHHHHHHHHHCCCeeEEE
Confidence 99994 5668899999985321111 011 1 1122345678888888889999999999977443
No 105
>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}
Probab=43.89 E-value=57 Score=30.51 Aligned_cols=94 Identities=9% Similarity=-0.069 Sum_probs=58.6
Q ss_pred HHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHH-------HH
Q 016960 44 QIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVT-------LN 116 (380)
Q Consensus 44 ~~a~~~~~~~~~~~Iy~lG~LIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~el~~g~~VIIrAHGv~~~~~~~-------l~ 116 (380)
-||...++. +-+|+++- -|+...+.|.+.|+...++ +.++-..+-|||..=.-++.+.+. ..
T Consensus 19 ~mA~~L~~~--G~~V~v~d---r~~~~~~~l~~~G~~~~~s------~~e~~~~~dvvi~~l~~~~~~~~v~~~~~~~~~ 87 (297)
T 4gbj_A 19 PIAEILLEA--GYELVVWN---RTASKAEPLTKLGATVVEN------AIDAITPGGIVFSVLADDAAVEELFSMELVEKL 87 (297)
T ss_dssp HHHHHHHHT--TCEEEEC----------CTTTTTTCEECSS------GGGGCCTTCEEEECCSSHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHC--CCeEEEEe---CCHHHHHHHHHcCCeEeCC------HHHHHhcCCceeeeccchhhHHHHHHHHHHhhc
Confidence 356666654 34677654 3677888999999999875 344433333666555544444332 23
Q ss_pred hcCCcEEeccCchhHHHHHHHHHHhhCCCeEE
Q 016960 117 NKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSI 148 (380)
Q Consensus 117 ~~g~~viDaTCP~V~kv~~~v~~~~~~Gy~iI 148 (380)
.+|-.+||.+=-.....++.++.+.++|...+
T Consensus 88 ~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~l 119 (297)
T 4gbj_A 88 GKDGVHVSMSTISPETSRQLAQVHEWYGAHYV 119 (297)
T ss_dssp CTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred CCCeEEEECCCCChHHHHHHHHHHHhcCCcee
Confidence 56778899888888888999999999997655
No 106
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=43.44 E-value=24 Score=32.93 Aligned_cols=93 Identities=10% Similarity=0.094 Sum_probs=55.6
Q ss_pred eeEEEEcCCCChHH--HHHHHHHHHHHHhhhcc-cccccccccccccccHHHHHhHHHHHHhhh-hcCCEEEEEccCCCc
Q 016960 219 KVGIANQTTMLKGE--TEEIGKLVEKTMMRKFG-VENVNEHFISFNTICDATQERQDAMYKMVE-EKVDLILVVGGWNSS 294 (380)
Q Consensus 219 kv~vvsQTT~~~~~--~~~i~~~l~~~~~~~~~-~~~~~~~~~~~nTIC~AT~~RQ~a~~eLa~-~~vD~miVVGG~nSS 294 (380)
+|+++.-.|=.... ...+.+-++..+.+.-+ .....-++.+.|+-|.+...++. +.+|.. ..||+ |||...|+
T Consensus 8 ~IG~~~p~sg~~a~~~g~~~~~g~~~a~~~i~ggi~G~~i~l~~~D~~~~~~~a~~~-~~~li~~~~v~~--iiG~~~s~ 84 (379)
T 3n0w_A 8 TLGVLTDMSSVYADSAGKGSVAAVQLAIEDVGGKALGQPVKLVSADYQMKTDVALSI-AREWFDRDGVDA--IFDVVNSG 84 (379)
T ss_dssp EEEEEECSSSTTTTTSHHHHHHHHHHHHHHTTTEETTEECEEEEEECTTCHHHHHHH-HHHHHHHSCCCE--EEECCCHH
T ss_pred EEEEEeCCccccccccCHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCCCHHHHHHH-HHHHHHhCCceE--EEcCCCcH
Confidence 78877654433322 23333333332222200 00112456788998877666554 455653 35554 58999999
Q ss_pred hhHHHHHHHHHhCCCeEeeC
Q 016960 295 NTSHLQEIAEDRGIPSYWID 314 (380)
Q Consensus 295 NT~kL~eia~~~~~~t~~Ie 314 (380)
.+..+.+++++.+.|.+...
T Consensus 85 ~~~a~~~~~~~~~ip~i~~~ 104 (379)
T 3n0w_A 85 TALAINNLVKDKKKLAFITA 104 (379)
T ss_dssp HHHHHHHHHHHHTCEEEECS
T ss_pred HHHHHHHHHHHcCceEEEcC
Confidence 99999999999998877653
No 107
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=43.33 E-value=1e+02 Score=27.32 Aligned_cols=90 Identities=14% Similarity=0.018 Sum_probs=50.7
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhHH-HHHHhhhhcCCEEEEEccCCCchhH
Q 016960 219 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNTS 297 (380)
Q Consensus 219 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-a~~eLa~~~vD~miVVGG~nSSNT~ 297 (380)
.|+++... ++-.-|..+.+-+.+...+. + -++.+.++-.....++|. .+..|...++|.+|+.+.. +....
T Consensus 3 ~Igvi~~~-~~~~f~~~~~~gi~~~a~~~-g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~-~~~~~ 74 (288)
T 1gud_A 3 EYAVVLKT-LSNPFWVDMKKGIEDEAKTL-G-----VSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLS-SVNLV 74 (288)
T ss_dssp EEEEEESC-SSSHHHHHHHHHHHHHHHHH-T-----CCEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCSS-SSTTH
T ss_pred EEEEEeCC-CCchHHHHHHHHHHHHHHHc-C-----CEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC-hHHHH
Confidence 57777654 44566777877776543322 2 123333311122334443 3445544689999998653 33333
Q ss_pred HHHHHHHHhCCCeEeeCCC
Q 016960 298 HLQEIAEDRGIPSYWIDSE 316 (380)
Q Consensus 298 kL~eia~~~~~~t~~Ie~~ 316 (380)
.+++.+.+.+.|...+.+.
T Consensus 75 ~~~~~~~~~~iPvV~~~~~ 93 (288)
T 1gud_A 75 MPVARAWKKGIYLVNLDEK 93 (288)
T ss_dssp HHHHHHHHTTCEEEEESSC
T ss_pred HHHHHHHHCCCeEEEECCC
Confidence 3445556788999999874
No 108
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=43.27 E-value=62 Score=24.97 Aligned_cols=45 Identities=13% Similarity=0.019 Sum_probs=29.6
Q ss_pred cCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhHHHHHHhhh
Q 016960 225 QTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVE 279 (380)
Q Consensus 225 QTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~eLa~ 279 (380)
.+..+.++|+++++..+. +. -=+.++.+.|..-+.=...+.+++.
T Consensus 14 ~~~~t~~~f~~~l~~~~~----k~------vlv~F~a~wC~~C~~~~p~l~~l~~ 58 (116)
T 3qfa_C 14 KQIESKTAFQEALDAAGD----KL------VVVDFSATWCGPSKMIKPFFHSLSE 58 (116)
T ss_dssp BCCCCHHHHHHHHHHHTT----SC------EEEEEECTTCHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHhcCC----CE------EEEEEECCCCHHHHHHHHHHHHHHH
Confidence 566677888877643221 11 1134778999998877788888873
No 109
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=42.71 E-value=1.1e+02 Score=26.70 Aligned_cols=23 Identities=17% Similarity=0.354 Sum_probs=17.7
Q ss_pred ccCCCEE-EEcCCCCCHHHHHHHH
Q 016960 94 VNKGDVV-VLPAFGAAVEEMVTLN 116 (380)
Q Consensus 94 l~~g~~V-IIrAHGv~~~~~~~l~ 116 (380)
+.++|.| +|+.-|-++++.+.++
T Consensus 112 ~~~~Dvvi~iS~SG~t~~~~~~~~ 135 (201)
T 3trj_A 112 GNEDDILLVITTSGDSENILSAVE 135 (201)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHH
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHH
Confidence 4567764 6888999999887664
No 110
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=42.68 E-value=76 Score=29.46 Aligned_cols=132 Identities=11% Similarity=0.118 Sum_probs=70.8
Q ss_pred eeEEEE-cCCCChHHHHHHHHHHHHHHhh---hcccccccccccccccccHHHHHhHHHHHHhhhh-cCCEEEEEccCCC
Q 016960 219 KVGIAN-QTTMLKGETEEIGKLVEKTMMR---KFGVENVNEHFISFNTICDATQERQDAMYKMVEE-KVDLILVVGGWNS 293 (380)
Q Consensus 219 kv~vvs-QTT~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~eLa~~-~vD~miVVGG~nS 293 (380)
+||++. .|.........+.+-++..+.+ .-+.....-++.+.|+-|.....++ ++.+|... .||++| | ..|
T Consensus 9 ~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~G~~i~l~~~D~~~~~~~~~~-~~~~li~~~~V~~ii--g-~~s 84 (392)
T 3lkb_A 9 TLFWSGAITGPTSDAGAPYGAAVEDYCKWANERKLVPGVVFNCVVRDDQYNNANTQR-FFEEAVDRFKIPVFL--S-YAT 84 (392)
T ss_dssp EEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHTSSTTEEEEEEEEECTTCHHHHHH-HHHHHHHTTCCSCEE--E-CCH
T ss_pred EEEEEecccCchhhcChhHHHHHHHHHHHHHhcCCcCCeEeEEEEecCCCCHHHHHH-HHHHHHhhcCcEEEE--e-CCc
Confidence 788765 5554444444444443332221 1011111235667888888766544 45556533 677765 6 678
Q ss_pred chhHHHHHHHHHhCCCeEeeCCCCccCC--CCcchhhh-c--cchhhhhcccCCC--CCCEEEEEeCC
Q 016960 294 SNTSHLQEIAEDRGIPSYWIDSEKRIGP--GNKIAYKL-M--HGELVEKENWLPK--GQITIGITSGA 354 (380)
Q Consensus 294 SNT~kL~eia~~~~~~t~~Ie~~~dL~~--~~~~~~~~-~--~~~~~~~~~wl~~--~~~~VGITAGA 354 (380)
+.+..+.+++++.+.|.+...+..++.. .....|.. . ..+......|+.+ +.++|++....
T Consensus 85 ~~~~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~ 152 (392)
T 3lkb_A 85 GANLQLKPLIQELRIPTIPASMHIELIDPPNNDYIFLPTTSYSEQVVALLEYIAREKKGAKVALVVHP 152 (392)
T ss_dssp HHHHHHHHHHHHHTCCEEESCCCGGGGSSSSCTTBCEEECCHHHHHHHHHHHHHHHCTTCEEEEEECS
T ss_pred HHHHHHHHHHHhCCceEEecccChhhccCCCCCceEecCCChHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 8888999999999999877554333311 11112221 1 1111222234321 67999998754
No 111
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=42.37 E-value=1.8e+02 Score=25.57 Aligned_cols=129 Identities=11% Similarity=0.073 Sum_probs=67.4
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhHH-HHHHhhhhcCCEEEEEccCCCchh
Q 016960 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNT 296 (380)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-a~~eLa~~~vD~miVVGG~nSSNT 296 (380)
..|+++... +-.-|..+.+-+.+...+. + -++.++++ ....++|. .+..|.+..+|.+|+.+...+..
T Consensus 9 ~~Igvi~~~--~~~~~~~~~~gi~~~~~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~- 77 (288)
T 2qu7_A 9 NIIAFIVPD--QNPFFTEVLTEISHECQKH-H-----LHVAVASS--EENEDKQQDLIETFVSQNVSAIILVPVKSKFQ- 77 (288)
T ss_dssp EEEEEEESS--CCHHHHHHHHHHHHHHGGG-T-----CEEEEEEC--TTCHHHHHHHHHHHHHTTEEEEEECCSSSCCC-
T ss_pred CEEEEEECC--CCchHHHHHHHHHHHHHHC-C-----CEEEEEeC--CCCHHHHHHHHHHHHHcCccEEEEecCCCChH-
Confidence 579998876 5667778887777643322 2 23333332 22334443 45555556899999987654432
Q ss_pred HHHHHHHHHhCCCeEeeCCCCccCCCCcchhhh-ccchhhhhcccC-CCCCCEEEEEeCCCCCHHHHHH
Q 016960 297 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGASTPDKAVED 363 (380)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~~dL~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGASTP~~lI~e 363 (380)
.+.++ .+.|...+.+..+-+...-+.... ..+.. ..+|| ..|.++||+..|.+...+..+.
T Consensus 78 -~~~~l---~~iPvV~~~~~~~~~~~~~V~~d~~~~g~~--a~~~L~~~G~~~I~~i~~~~~~~~~~~R 140 (288)
T 2qu7_A 78 -MKREW---LKIPIMTLDRELESTSLPSITVDNEEAAYI--ATKRVLESTCKEVGLLLANPNISTTIGR 140 (288)
T ss_dssp -CCGGG---GGSCEEEESCCCSSCCCCEEEECHHHHHHH--HHHHHHTSSCCCEEEEECCTTSHHHHHH
T ss_pred -HHHHh---cCCCEEEEecccCCCCCCEEEECcHHHHHH--HHHHHHHcCCCcEEEEecCCCCCCHHHH
Confidence 12222 678998887753211111111000 11111 11333 1378999999987544343333
No 112
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=41.98 E-value=2.1e+02 Score=26.28 Aligned_cols=134 Identities=14% Similarity=0.181 Sum_probs=66.5
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhH-HHHHHhhhhcCCEEEEEccCCCchh
Q 016960 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (380)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGG~nSSNT 296 (380)
..|+++.-. +.-..|..+.+-+.+...+. + -++.++++- ....++| +.+..|....+|.+|+.+...+ .
T Consensus 62 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~-~~~~~~~~~~l~~l~~~~vdGiIi~~~~~~--~ 131 (349)
T 1jye_A 62 LLIGVATSS-LALHAPSQIVAAILSRADQL-G-----ASVVVSMVE-RSGVEACKTAVHNLLAQRVSGLIINYPLDD--Q 131 (349)
T ss_dssp CEEEEEESC-TTSHHHHHHHHHHHHHHHHT-T-----CEEEEEECC-SSSHHHHHHHHHHHHTTTCSCEEEESCCCH--H
T ss_pred CEEEEEeCC-CCcccHHHHHHHHHHHHHHc-C-----CEEEEEeCC-CCcHHHHHHHHHHHHHCCCCEEEEecCCCC--h
Confidence 478888754 34455677777666543322 2 122222210 0112333 3455555568999999875322 2
Q ss_pred HHHHHHHHHhCCCeEeeCCCCccCCCCcchhhh-ccchhhhhcccCC-CCCCEEEEEeCCCCCHHHHHHH
Q 016960 297 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWLP-KGQITIGITSGASTPDKAVEDV 364 (380)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~~dL~~~~~~~~~~-~~~~~~~~~~wl~-~~~~~VGITAGASTP~~lI~eV 364 (380)
..+...+...+.|...++...+- ...-+.+.- ..+.. --+||- .|.++||+-+|........+..
T Consensus 132 ~~~~~~~~~~~iPvV~i~~~~~~-~~~~V~~d~~~~~~~--a~~~L~~~G~~~I~~i~g~~~~~~~~~R~ 198 (349)
T 1jye_A 132 DAIAVEAACTNVPALFLDVSDQT-PINSIIFSHEDGTRL--GVEHLVALGHQQIALLAGPLSSVSARLRL 198 (349)
T ss_dssp HHHHHHHHTTTSCEEESSSCTTS-SSCEEEECHHHHHHH--HHHHHHHHTCCSEEEEECCTTSHHHHHHH
T ss_pred hHHHHHHhhCCCCEEEEcccCCC-CCCEEEEchHHHHHH--HHHHHHHCCCCEEEEEeCCCCCccHHHHH
Confidence 23444455578899988764321 111111110 11111 112331 3789999999875544433333
No 113
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=41.43 E-value=25 Score=32.63 Aligned_cols=58 Identities=17% Similarity=0.178 Sum_probs=43.5
Q ss_pred ccccccccccHHHHHhHHHHHHhhhhcCCEEEEEccCCCchhHHHHHHHHHhCCCeEeeC
Q 016960 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWID 314 (380)
Q Consensus 255 ~~~~~~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGG~nSSNT~kL~eia~~~~~~t~~Ie 314 (380)
-++.+.|+-|.....++ ++.+|. .+-.+..|||+..|+.+..+.+++++.+.|.+...
T Consensus 45 i~l~~~D~~~~~~~a~~-~~~~li-~~~~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~ 102 (375)
T 3i09_A 45 IEVVYADHQNKADIAAS-KAREWM-DRGGLDLLVGGTNSATALSMNQVAAEKKKVYINIG 102 (375)
T ss_dssp EEEEEEECTTCHHHHHH-HHHHHH-HHSCEEEEEECSCHHHHHHHHHHHHHHTCEEEECS
T ss_pred EEEEEecCCCCHHHHHH-HHHHHH-hhCCCEEEECCCCcHHHHHHHHHHHHcCceEEEeC
Confidence 35668899887766654 445565 23456667899999999999999999998877663
No 114
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=41.09 E-value=24 Score=29.02 Aligned_cols=45 Identities=13% Similarity=0.220 Sum_probs=33.7
Q ss_pred HHhhhhcCCEEEEEccCCCchhH---HHHHHHHHhCCCeEeeC--CCCccCC
Q 016960 275 YKMVEEKVDLILVVGGWNSSNTS---HLQEIAEDRGIPSYWID--SEKRIGP 321 (380)
Q Consensus 275 ~eLa~~~vD~miVVGG~nSSNT~---kL~eia~~~~~~t~~Ie--~~~dL~~ 321 (380)
.+|. .+|++||+-|.+|+|+. .-.+.|++.|.|-+-|. +.+++|.
T Consensus 34 ~~I~--~~~~vIvL~G~~t~~s~wv~~EI~~A~~~gkpIigV~~~g~~~~P~ 83 (111)
T 1eiw_A 34 ATPE--DADAVIVLAGLWGTRRDEILGAVDLARKSSKPIITVRPYGLENVPP 83 (111)
T ss_dssp CCSS--SCSEEEEEGGGTTTSHHHHHHHHHHHTTTTCCEEEECCSSSSCCCT
T ss_pred Cccc--cCCEEEEEeCCCcCCChHHHHHHHHHHHcCCCEEEEEcCCCCcCCH
Confidence 5563 79999999999998876 56677888998875554 4555554
No 115
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A 3goq_A 1doz_A 2q2n_A* 3m4z_A 2h1w_A 2ac2_A 2q3j_A* 2ac4_A 2q2o_A* 1c9e_A* 2c8j_A
Probab=40.65 E-value=60 Score=30.82 Aligned_cols=91 Identities=10% Similarity=0.073 Sum_probs=51.8
Q ss_pred cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccc-cccCCCEEEEcCCCCCHHHHHH
Q 016960 36 CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFD-VVNKGDVVVLPAFGAAVEEMVT 114 (380)
Q Consensus 36 C~GV~RAI~~a~~~~~~~~~~~Iy~lG~LIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~-el~~g~~VIIrAHGv~~~~~~~ 114 (380)
|..+.-+.+.+.+++.+.+.-.+-..-++=-+|..++.|.++=-..+.. +. +.++++.||+++||+|....+
T Consensus 119 ~st~g~~~~~i~~~l~~~~~~~i~~i~~~~~~p~~i~a~a~~i~~~l~~------~~~~~~~~~~llfs~HG~P~~~~~- 191 (310)
T 2h1v_A 119 TFSVQSYNKRAKEEAEKLGGLTITSVESWYDEPKFVTYWVDRVKETYAS------MPEDERENAMLIVSAHSLPEKIKE- 191 (310)
T ss_dssp TTTHHHHHHHHHHHHHHHCSCEEEECCCCTTCHHHHHHHHHHHHHHHHH------SCHHHHTSEEEEEEEECCBGGGGG-
T ss_pred hhhHHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHHHHHHHHh------cccccCCCceEEEecCCCchhhcc-
Confidence 3444445555555554433334666666666777777766541111110 00 112456899999999977542
Q ss_pred HHhcCCcEEeccCchhHHHHHHHHHHhhC
Q 016960 115 LNNKNVQIVDTTCPWVSKVWTSVEKHKKG 143 (380)
Q Consensus 115 l~~~g~~viDaTCP~V~kv~~~v~~~~~~ 143 (380)
+ .-|+-..+++.++.+.++
T Consensus 192 ---~-------gDpY~~~~~~t~~~l~e~ 210 (310)
T 2h1v_A 192 ---F-------GDPYPDQLHESAKLIAEG 210 (310)
T ss_dssp ---G-------TCCHHHHHHHHHHHHHHH
T ss_pred ---C-------CCChHHHHHHHHHHHHHH
Confidence 2 356878888777766553
No 116
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=40.59 E-value=35 Score=26.99 Aligned_cols=43 Identities=21% Similarity=0.322 Sum_probs=33.9
Q ss_pred hhhhcCCEEEEEccCCCchhH-HHHHHHHHhCCCeEee-CCCCccC
Q 016960 277 MVEEKVDLILVVGGWNSSNTS-HLQEIAEDRGIPSYWI-DSEKRIG 320 (380)
Q Consensus 277 La~~~vD~miVVGG~nSSNT~-kL~eia~~~~~~t~~I-e~~~dL~ 320 (380)
+-++++-++|+-.+ -|.|+. +|-.+|++.+.|.|.+ .|-.||-
T Consensus 28 i~~gka~lViiA~D-~~~~~~~~l~~~c~~~~vp~~~~~~s~~eLG 72 (101)
T 1w41_A 28 AKMGGAKLIIVARN-ARPDIKEDIEYYARLSGIPVYEFEGTSVELG 72 (101)
T ss_dssp HHHTCCSEEEEETT-SCHHHHHHHHHHHHHHTCCEEEESSCHHHHH
T ss_pred HHcCCCcEEEEeCC-CCHHHHHHHHHHHHhcCCCEEEecCCHHHHH
Confidence 33467888888888 678877 5778899999998875 8888885
No 117
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=40.04 E-value=1.1e+02 Score=26.05 Aligned_cols=35 Identities=17% Similarity=0.352 Sum_probs=23.2
Q ss_pred ccCCCE-EEEcCCCCCHHHHHHH---HhcCCcEEeccCc
Q 016960 94 VNKGDV-VVLPAFGAAVEEMVTL---NNKNVQIVDTTCP 128 (380)
Q Consensus 94 l~~g~~-VIIrAHGv~~~~~~~l---~~~g~~viDaTCP 128 (380)
+.++|. ++|+.-|-++++.+.+ +++|..+|=-|+.
T Consensus 111 ~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~ 149 (199)
T 1x92_A 111 GQPGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGR 149 (199)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECT
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 456776 5789999999876654 4455555544443
No 118
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=39.97 E-value=60 Score=29.03 Aligned_cols=137 Identities=15% Similarity=0.098 Sum_probs=70.4
Q ss_pred ceeEEEEcCCCChHHHH-HHHHHHHHHHhhhcccccccccccccccccHHHHHhHHH-HHHhhhhcCCEEEEEccCCCch
Q 016960 218 VKVGIANQTTMLKGETE-EIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDA-MYKMVEEKVDLILVVGGWNSSN 295 (380)
Q Consensus 218 ~kv~vvsQTT~~~~~~~-~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a-~~eLa~~~vD~miVVGG~nSSN 295 (380)
..|+++.....+ ..|. .+.+-+.+...+. + -++.++++ ....++|.. +..|.+..+|.+|+.+...+.
T Consensus 14 ~~Igvi~~~~~~-~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~- 83 (301)
T 3miz_A 14 NTFGIITDYVST-TPYSVDIVRGIQDWANAN-G-----KTILIANT--GGSSEREVEIWKMFQSHRIDGVLYVTMYRRI- 83 (301)
T ss_dssp CEEEEEESSTTT-CCSCHHHHHHHHHHHHHT-T-----CEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEEEEEEEEE-
T ss_pred CEEEEEeCCCcC-cccHHHHHHHHHHHHHHC-C-----CEEEEEeC--CCChHHHHHHHHHHHhCCCCEEEEecCCccH-
Confidence 579988765322 2244 5555554432222 2 23333332 223344533 344445689999999875433
Q ss_pred hHHHHHHHHHhCCCeEeeCCCCccC-CCCcchhh-hccchhhhhcccC-CCCCCEEEEEeCCCCCHHHHHHHHHHHH
Q 016960 296 TSHLQEIAEDRGIPSYWIDSEKRIG-PGNKIAYK-LMHGELVEKENWL-PKGQITIGITSGASTPDKAVEDVLKKVF 369 (380)
Q Consensus 296 T~kL~eia~~~~~~t~~Ie~~~dL~-~~~~~~~~-~~~~~~~~~~~wl-~~~~~~VGITAGASTP~~lI~eV~~~l~ 369 (380)
.++.+.+.+.|...+.+..+-. ...-+... ...+.. .-++| ..|.++||+..|.....+..+....+..
T Consensus 84 ---~~~~~~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~--a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 155 (301)
T 3miz_A 84 ---VDPESGDVSIPTVMINCRPQTRELLPSIEPDDYQGARD--LTRYLLERGHRRIGYIRLNPILLGAELRLDAFRR 155 (301)
T ss_dssp ---CCCCCTTCCCCEEEEEEECSSTTSSCEEEECHHHHHHH--HHHHHHTTTCCSEEEEECCTTSHHHHHHHHHHHH
T ss_pred ---HHHHHHhCCCCEEEECCCCCCCCCCCEEeeChHHHHHH--HHHHHHHcCCCeEEEEecCccchhHHHHHHHHHH
Confidence 4445557789998887643322 11111110 011111 11222 2488999999997766555444444433
No 119
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=39.89 E-value=1.5e+02 Score=26.17 Aligned_cols=123 Identities=16% Similarity=0.144 Sum_probs=57.8
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhccccccccccccc-ccccHHHHHhH-HHHHHhhhhcCCEEEEEccCCCch
Q 016960 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISF-NTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSN 295 (380)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~-nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGG~nSSN 295 (380)
..|+++.-. ++-.-|..+.+-+.+...+. + -++.+. ++ ....++| +.+..|.+..+|.+|+.+...+.
T Consensus 9 ~~Ig~i~~~-~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~- 78 (290)
T 3clk_A 9 NVIAAVVSS-VRTNFAQQILDGIQEEAHKN-G-----YNLIIVYSG--SADPEEQKHALLTAIERPVMGILLLSIALTD- 78 (290)
T ss_dssp CEEEEECCC-CSSSHHHHHHHHHHHHHHTT-T-----CEEEEEC------------CHHHHHHSSCCSEEEEESCC----
T ss_pred CEEEEEeCC-CCChHHHHHHHHHHHHHHHc-C-----CeEEEEeCC--CCCHHHHHHHHHHHHhcCCCEEEEecccCCH-
Confidence 578888743 44456777777776543222 1 123222 22 1222333 34555555689999998764332
Q ss_pred hHHHHHHHHHhCCCeEeeCCCCccCCCCcchhhh-ccchhhhhcccC-CCCCCEEEEEeCCC
Q 016960 296 TSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGAS 355 (380)
Q Consensus 296 T~kL~eia~~~~~~t~~Ie~~~dL~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGAS 355 (380)
..++.+++.+.|...+.+..+-+ ..-+...- ..+.. ...|| ..|.++||+-.|.+
T Consensus 79 --~~~~~l~~~~iPvV~~~~~~~~~-~~~V~~D~~~~g~~--a~~~L~~~G~~~i~~i~~~~ 135 (290)
T 3clk_A 79 --DNLQLLQSSDVPYCFLSMGFDDD-RPFISSDDEDIGYQ--ATNLLINEGHRQIGIAGIDQ 135 (290)
T ss_dssp ---CHHHHHCC--CEEEESCC--CC-SCEEECCHHHHHHH--HHHHHHTTTCCSEEEESCCC
T ss_pred --HHHHHHHhCCCCEEEEcCCCCCC-CCEEEeChHHHHHH--HHHHHHHcCCCEEEEEeCCC
Confidence 33445556788999887743211 11111100 11111 11233 13789999998863
No 120
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=39.82 E-value=13 Score=35.48 Aligned_cols=58 Identities=17% Similarity=0.221 Sum_probs=42.6
Q ss_pred ccccccccccHHHHHhHHHHHHhhhhcCCEEEEEccCCCchhHHHHHHHHHhCCCeEee
Q 016960 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWI 313 (380)
Q Consensus 255 ~~~~~~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGG~nSSNT~kL~eia~~~~~~t~~I 313 (380)
-++.+.|+-|....-.+.+. +|....-.+..|||+..|+.+.....+++..+.|.+--
T Consensus 58 l~l~~~D~~~~~~~a~~~a~-~li~~~~~v~aviG~~~S~~~~a~~~~~~~~~ip~is~ 115 (433)
T 4f11_A 58 LDLRLYDTECDNAKGLKAFY-DAIKYGPNHLMVFGGVCPSVTSIIAESLQGWNLVQLSF 115 (433)
T ss_dssp EEEEEEECTTCHHHHHHHHH-HHHHHSCCCSEEEECCSHHHHHHHHHTHHHHTCEEEES
T ss_pred EEEEEecCCCCHHHHHHHHH-HHHhcCCceEEEECCCcchHHHHHHHHHHhcCceEEEc
Confidence 45668899998876655544 45422224567889999999999999999998876543
No 121
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=39.80 E-value=42 Score=27.75 Aligned_cols=30 Identities=17% Similarity=0.145 Sum_probs=20.9
Q ss_pred EEcCCCCCHHHHHHHHhcCCcEEeccCchhH
Q 016960 101 VLPAFGAAVEEMVTLNNKNVQIVDTTCPWVS 131 (380)
Q Consensus 101 IIrAHGv~~~~~~~l~~~g~~viDaTCP~V~ 131 (380)
++.+--..++..+.+++.|+.++. -|..|.
T Consensus 87 ~~~~G~~~~e~~~~a~~~Girvv~-nC~gv~ 116 (122)
T 3ff4_A 87 IFNPGTENEELEEILSENGIEPVI-GCTLVM 116 (122)
T ss_dssp EECTTCCCHHHHHHHHHTTCEEEE-SCHHHH
T ss_pred EECCCCChHHHHHHHHHcCCeEEC-CcCeEE
Confidence 333333467888888888888886 787664
No 122
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=39.38 E-value=22 Score=27.31 Aligned_cols=46 Identities=26% Similarity=0.359 Sum_probs=33.6
Q ss_pred HHhhhhcCCEEEEEccCCCchhHHHHHHHHHhCCCeEeeCCCCccC
Q 016960 275 YKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIG 320 (380)
Q Consensus 275 ~eLa~~~vD~miVVGG~nSSNT~kL~eia~~~~~~t~~Ie~~~dL~ 320 (380)
+.+-++++-++|+-.+-...-..+|-.+|++.+.|.+++.+-.||-
T Consensus 21 kai~~gkaklViiA~D~~~~~~~~i~~lc~~~~Ip~~~v~sk~eLG 66 (82)
T 3v7e_A 21 KALKRGSVKEVVVAKDADPILTSSVVSLAEDQGISVSMVESMKKLG 66 (82)
T ss_dssp HHHTTTCEEEEEEETTSCHHHHHHHHHHHHHHTCCEEEESCHHHHH
T ss_pred HHHHcCCeeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCHHHHH
Confidence 3343456767777666665334478889999999999999988874
No 123
>1t1j_A Hypothetical protein; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.14.2
Probab=38.59 E-value=25 Score=29.69 Aligned_cols=39 Identities=15% Similarity=0.157 Sum_probs=32.8
Q ss_pred HHhhhhcCCEEEEE---ccCCCchhHHHHHHHHHhCCCeEeeC
Q 016960 275 YKMVEEKVDLILVV---GGWNSSNTSHLQEIAEDRGIPSYWID 314 (380)
Q Consensus 275 ~eLa~~~vD~miVV---GG~nSSNT~kL~eia~~~~~~t~~Ie 314 (380)
.+|. ..||.|+|. |...|.=-+.=+++|++.|.|.++..
T Consensus 77 ~~lL-~~CdevwV~~L~Gw~~S~Gm~~Ei~~A~~~g~pV~~~~ 118 (125)
T 1t1j_A 77 AFYM-DHLEELIVLDLPGWRDSAGIRREMEFFEAGGQRVSLWS 118 (125)
T ss_dssp HHHH-HHCSEEEECCCTTGGGCHHHHHHHHHHHHTTCEEEEHH
T ss_pred HHHH-HhCCeeEEEecCCCCCChhHHHHHHHHHHCCCcEEEEc
Confidence 4566 589999998 88889999999999999999886543
No 124
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=38.19 E-value=85 Score=25.36 Aligned_cols=74 Identities=14% Similarity=-0.021 Sum_probs=49.1
Q ss_pred HHHHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCc-EEeccCchhHHHHHHHHHHhhCCCe
Q 016960 68 PTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQ-IVDTTCPWVSKVWTSVEKHKKGDYT 146 (380)
Q Consensus 68 ~~Vv~~L~~~Gv~~v~~~~~~~~~~el~~g~~VIIrAHGv~~~~~~~l~~~g~~-viDaTCP~V~kv~~~v~~~~~~Gy~ 146 (380)
...++.|+++|+.+.= ++ -+-.......++..|+. ..|...|...-+...++++.-....
T Consensus 42 ~~~l~~l~~~g~~~~i------------------~T-~~~~~~~~~~l~~~gl~~~~~~~kp~~~~~~~~~~~~~~~~~~ 102 (162)
T 2p9j_A 42 GIGIKLLQKMGITLAV------------------IS-GRDSAPLITRLKELGVEEIYTGSYKKLEIYEKIKEKYSLKDEE 102 (162)
T ss_dssp HHHHHHHHTTTCEEEE------------------EE-SCCCHHHHHHHHHTTCCEEEECC--CHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHCCCEEEE------------------Ee-CCCcHHHHHHHHHcCCHhhccCCCCCHHHHHHHHHHcCCCHHH
Confidence 4678888888876441 11 12245667777777875 5888889888888888877666678
Q ss_pred EEEEecCCCceeeee
Q 016960 147 SIIHGKYSHEETVAT 161 (380)
Q Consensus 147 iIIiG~~~HpEv~gi 161 (380)
++.+||.. .-+.+.
T Consensus 103 ~~~vGD~~-~Di~~a 116 (162)
T 2p9j_A 103 IGFIGDDV-VDIEVM 116 (162)
T ss_dssp EEEEECSG-GGHHHH
T ss_pred EEEECCCH-HHHHHH
Confidence 99999876 344433
No 125
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=38.12 E-value=1.7e+02 Score=26.96 Aligned_cols=130 Identities=11% Similarity=0.092 Sum_probs=66.6
Q ss_pred ceeEEEEc-CCCCh-HHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhHHHHHHhhhhcCCEEEEEccCCCch
Q 016960 218 VKVGIANQ-TTMLK-GETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSN 295 (380)
Q Consensus 218 ~kv~vvsQ-TT~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGG~nSSN 295 (380)
.+|+++.- ..+.- .-|..+.+-+.+.. +..+ -++.+.++- . ..+..+.++.|++..+|.+|++|...+
T Consensus 5 ~~Ig~v~~~g~~~d~~f~~~~~~Gi~~~~-~~~g-----~~~~~~~~~-~-~~~~~~~l~~l~~~~~dgIi~~~~~~~-- 74 (318)
T 2fqx_A 5 FVVGMVTDSGDIDDKSFNQQVWEGISRFA-QENN-----AKCKYVTAS-T-DAEYVPSLSAFADENMGLVVACGSFLV-- 74 (318)
T ss_dssp CEEEEEESSSCTTSSSHHHHHHHHHHHHH-HHTT-----CEEEEEECC-S-GGGHHHHHHHHHHTTCSEEEEESTTTH--
T ss_pred cEEEEEEcCCCCCCccHHHHHHHHHHHHH-HHhC-----CeEEEEeCC-C-HHHHHHHHHHHHHcCCCEEEECChhHH--
Confidence 47999885 23333 45666666655422 2222 123333331 2 223345677787668999999875432
Q ss_pred hHHHHHHHHHh-CCCeEeeCCCCc-cCCCCcchhhhccc-hhh-hhcccC-CCCC-CEEEEEeCCCCCH
Q 016960 296 TSHLQEIAEDR-GIPSYWIDSEKR-IGPGNKIAYKLMHG-ELV-EKENWL-PKGQ-ITIGITSGASTPD 358 (380)
Q Consensus 296 T~kL~eia~~~-~~~t~~Ie~~~d-L~~~~~~~~~~~~~-~~~-~~~~wl-~~~~-~~VGITAGASTP~ 358 (380)
..+.+++++. +.|..+|.+..+ .+...-+.+.-..+ .+. .....| ..|. ++||..+|-..|.
T Consensus 75 -~~~~~~a~~~p~~p~v~id~~~~~~~~~~~v~~d~~~~~~lag~~a~~l~~~Gh~r~Ig~i~g~~~~~ 142 (318)
T 2fqx_A 75 -EAVIETSARFPKQKFLVIDAVVQDRDNVVSAVFGQNEGSFLVGVAAALKAKEAGKSAVGFIVGMELGM 142 (318)
T ss_dssp -HHHHHHHHHCTTSCEEEESSCCCSCTTEEEEEECHHHHHHHHHHHHHHHHHHTTCCEEEEEESCCSTT
T ss_pred -HHHHHHHHHCCCCEEEEEcCccCCCCCEEEEEechHHHHHHHHHHHHHHhccCCCcEEEEEeCcccHH
Confidence 2366677653 678888887533 22100111111111 110 001122 1355 7999999876654
No 126
>3cl6_A PUUE allantoinase; URIC acid, nitrogen fixation, hydrolase; 1.58A {Pseudomonas fluorescens} PDB: 3cl7_A 3cl8_A 1z7a_A
Probab=38.10 E-value=1.3e+02 Score=27.98 Aligned_cols=84 Identities=8% Similarity=-0.037 Sum_probs=51.9
Q ss_pred cccHHHHHHHHHHHHhhCC-CCceEEecccc-cCHHHHHHHHHcCcEEecCCcccc-------------------ccccc
Q 016960 36 CWGVERAVQIAYEARKQFP-EEKIWITNEII-HNPTVNKRLEEMAVQNIPVEEGKK-------------------QFDVV 94 (380)
Q Consensus 36 C~GV~RAI~~a~~~~~~~~-~~~Iy~lG~LI-HN~~Vv~~L~~~Gv~~v~~~~~~~-------------------~~~el 94 (380)
-+|-+..+..+.+.+++++ +--.|+.|..+ .||.+++++.+.|-.+-...-... .+.++
T Consensus 76 DdG~~~~~~~ll~iL~~~~v~aTfFv~g~~~~~~p~~v~~i~~~GheIg~Ht~~H~~~~~~s~~~~~~ei~~~~~~l~~~ 155 (308)
T 3cl6_A 76 EYGSRAGVWRILKLFKAFDIPLTIFAVAMAAQRHPDVIRAMVAAGHEICSHGYRWIDYQYMDEAQEREHMLEAIRILTEL 155 (308)
T ss_dssp HHHHHTHHHHHHHHHHHTTCCCEEEECHHHHHHCHHHHHHHHHTTCEEEECCSSSSCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ecCchhhHHHHHHHHHHcCCCEEEEeEHHHHHHCHHHHHHHHHcCCEEEeCCCCCcccccCCHHHHHHHHHHHHHHHHHH
Confidence 3444444555555666543 23688998865 799999999999976543211000 11122
Q ss_pred cCCCEEEEcCCCCCHHHHHHHHhcC
Q 016960 95 NKGDVVVLPAFGAAVEEMVTLNNKN 119 (380)
Q Consensus 95 ~~g~~VIIrAHGv~~~~~~~l~~~g 119 (380)
..-....+|+-..++.+.+.|++.|
T Consensus 156 ~G~~p~g~r~~~~~~~~~~~l~~~G 180 (308)
T 3cl6_A 156 TGERPLGWYTGRTGPNTRRLVMEEG 180 (308)
T ss_dssp HSSCCSEECCSSCCTTHHHHHHHHC
T ss_pred hCCCcceEECCCCCHHHHHHHHHCC
Confidence 1112345777667889999999988
No 127
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=38.08 E-value=53 Score=27.46 Aligned_cols=47 Identities=9% Similarity=0.166 Sum_probs=36.9
Q ss_pred HHHhhhhcCCEEEEEccCCCchhH-HHHHHHHHhCCCeEeeCCCCccC
Q 016960 274 MYKMVEEKVDLILVVGGWNSSNTS-HLQEIAEDRGIPSYWIDSEKRIG 320 (380)
Q Consensus 274 ~~eLa~~~vD~miVVGG~nSSNT~-kL~eia~~~~~~t~~Ie~~~dL~ 320 (380)
++.|-++++-++|+-..-.-.|+. +|-.+|++++.|.+++.+-.+|-
T Consensus 33 ~Kai~~gka~LViiA~D~~p~~~~~~i~~lc~~~~Ip~~~v~sk~~LG 80 (126)
T 2xzm_U 33 LRTIEAKQALFVCVAEDCDQGNYVKLVKALCAKNEIKYVSVPKRASLG 80 (126)
T ss_dssp HHHHHHTCCSEEEEESSCCSTTHHHHHHHHHHHTTCCEEEESCSHHHH
T ss_pred HHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECCHHHHH
Confidence 333444678888888887767885 67789999999999999988874
No 128
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=37.06 E-value=26 Score=33.23 Aligned_cols=56 Identities=11% Similarity=0.108 Sum_probs=40.9
Q ss_pred ccccccc-----ccHHHHHhHHHHHHhhhhcCCEEEEEccCCCchhHHHHHHHHHhCCCeEee
Q 016960 256 HFISFNT-----ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWI 313 (380)
Q Consensus 256 ~~~~~nT-----IC~AT~~RQ~a~~eLa~~~vD~miVVGG~nSSNT~kL~eia~~~~~~t~~I 313 (380)
++.+.|| -|....--+.+.+.|.+..+ ..|||+..|+.|..+..++...+.|.+--
T Consensus 47 ~~~~~D~~~~p~~c~~~~a~~~a~~~l~~~~v--~aviG~~~S~~~~av~~~~~~~~ip~is~ 107 (435)
T 1dp4_A 47 RMVLGSSENAAGVCSDTAAPLAAVDLKWEHSP--AVFLGPGCVYSAAPVGRFTAHWRVPLLTA 107 (435)
T ss_dssp EEEEEECBCTTSSBCTTHHHHHHHHHHHHHCC--SEEECCCSHHHHHHHHHHHHHHTCCEEES
T ss_pred EEEEecCcCcccccchhhHHHHHHHHHHhcCc--eEEECCCChHHHHHHHHHHHhcCCcEEcc
Confidence 5667888 67766444555555543345 46889999999999999999999886543
No 129
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=36.92 E-value=2.3e+02 Score=25.23 Aligned_cols=89 Identities=19% Similarity=0.259 Sum_probs=51.1
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhH-HHHHHhhhhcCCEEEEEccCCCchh
Q 016960 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (380)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGG~nSSNT 296 (380)
.+|+++..++ ...-|..+.+-+.+...+. + -++.++++ ....++| +.+..|.+..+|.+|+.+...++ .
T Consensus 3 ~~Ig~i~~~~-~~~~~~~~~~gi~~~a~~~-g-----~~l~~~~~--~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~-~ 72 (306)
T 2vk2_A 3 LTVGFSQVGS-ESGWRAAETNVAKSEAEKR-G-----ITLKIADG--QQKQENQIKAVRSFVAQGVDAIFIAPVVATG-W 72 (306)
T ss_dssp CEEEEEECCC-CSHHHHHHHHHHHHHHHHH-T-----CEEEEEEC--TTCHHHHHHHHHHHHHHTCSEEEECCSSSSS-C
T ss_pred eEEEEEeCCC-CCHHHHHHHHHHHHHHHHc-C-----CEEEEeCC--CCCHHHHHHHHHHHHHcCCCEEEEeCCChhh-H
Confidence 3788888764 3445666666665533222 2 22333332 2223444 33455545689999988654332 2
Q ss_pred HHHHHHHHHhCCCeEeeCCC
Q 016960 297 SHLQEIAEDRGIPSYWIDSE 316 (380)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~ 316 (380)
..+++.+.+.+.|...+.+.
T Consensus 73 ~~~~~~~~~~~iPvV~~~~~ 92 (306)
T 2vk2_A 73 EPVLKEAKDAEIPVFLLDRS 92 (306)
T ss_dssp HHHHHHHHHTTCCEEEESSC
T ss_pred HHHHHHHHHCCCCEEEecCC
Confidence 34555566788999988864
No 130
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=36.80 E-value=1.3e+02 Score=27.36 Aligned_cols=141 Identities=11% Similarity=0.045 Sum_probs=66.1
Q ss_pred ceeEEEEcCCCCh-HHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhHHHHHHhhhhcCCEEEEEccCCCchh
Q 016960 218 VKVGIANQTTMLK-GETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNT 296 (380)
Q Consensus 218 ~kv~vvsQTT~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGG~nSSNT 296 (380)
.+|+++.-..+.- .-|..+.+-+.+.. +..+ -++.+.++.-. ..+.++.++.|++..+|.+|++|... +
T Consensus 6 ~~Ig~v~~~~~~d~~f~~~~~~gi~~~~-~~~g-----~~~~~~~~~~~-~~~~~~~l~~l~~~~vdgIi~~~~~~---~ 75 (296)
T 2hqb_A 6 GMVGLLVEDTIDDQGWNRKAYEGLLNIH-SNLD-----VDVVLEEGVNS-EQKAHRRIKELVDGGVNLIFGHGHAF---A 75 (296)
T ss_dssp CEEEEECCCC----CCTHHHHHHHHHHH-HHSC-----CEEEEECCCCS-HHHHHHHHHHHHHTTCCEEEECSTHH---H
T ss_pred cEEEEEECCCCCCCcHHHHHHHHHHHHH-HHhC-----CeEEEEeCCCC-HHHHHHHHHHHHHCCCCEEEEcCHhH---H
Confidence 4788876432322 33455555544321 1212 12322222211 22333567777767899999986422 2
Q ss_pred HHHHHHHHHh-CCCeEeeCCCCccCCCCcchhhhccc-hh-hhhcccCCCCCCEEEEEeCCCCCHHHHHHHHHHHHh
Q 016960 297 SHLQEIAEDR-GIPSYWIDSEKRIGPGNKIAYKLMHG-EL-VEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFE 370 (380)
Q Consensus 297 ~kL~eia~~~-~~~t~~Ie~~~dL~~~~~~~~~~~~~-~~-~~~~~wl~~~~~~VGITAGASTP~~lI~eV~~~l~~ 370 (380)
..+.+++++. +.|..+|.+..+-+...-+.+.-..+ .+ ..-...+ .+.++||..+|-..|. -++--...|++
T Consensus 76 ~~~~~~~~~~p~~p~v~id~~~~~~~~~~v~~d~~~g~~lag~la~~l-~~~~~Ig~i~g~~~~~-r~~Gf~~~~~~ 150 (296)
T 2hqb_A 76 EYFSTIHNQYPDVHFVSFNGEVKGENITSLHFEGYAMGYFGGMVAASM-SETHKVGVIAAFPWQP-EVEGFVDGAKY 150 (296)
T ss_dssp HHHHTTTTSCTTSEEEEESCCCCSSSEEEEEECCHHHHHHHHHHHHHT-CSSSEEEEEESCTTCH-HHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEEEecCcCCCCEEEEEechHHHHHHHHHHHHhh-ccCCeEEEEcCcCchh-hHHHHHHHHHH
Confidence 3355565443 45677887643221100011111111 11 1111234 3579999999987775 33333344433
No 131
>1lbq_A Ferrochelatase; rossmann fold, PI-helix, lyase; 2.40A {Saccharomyces cerevisiae} SCOP: c.92.1.1 PDB: 1l8x_A
Probab=36.75 E-value=1.5e+02 Score=28.87 Aligned_cols=70 Identities=11% Similarity=0.075 Sum_probs=43.0
Q ss_pred eEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeccCchhHHHHHHH
Q 016960 58 IWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSV 137 (380)
Q Consensus 58 Iy~lG~LIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~el~~g~~VIIrAHGv~~~~~~~l~~~g~~viDaTCP~V~kv~~~v 137 (380)
+-..-+.=.+|..++.|.++=-..+.... .+.+++..||++|||+|....+ +| -|+...+++.+
T Consensus 162 i~~i~~~~~~p~~I~ala~~I~~~l~~~~-----~~~~~~~~llfSaHglP~~~~~----~G-------DpY~~q~~~ta 225 (362)
T 1lbq_A 162 WSVIDRWPTNEGLIKAFSENITKKLQEFP-----QPVRDKVVLLFSAHSLPMDVVN----TG-------DAYPAEVAATV 225 (362)
T ss_dssp EEEECCCTTCHHHHHHHHHHHHHHHHTSC-----STTGGGCEEEEEEECCBHHHHT----TT-------CSHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHhcC-----cccCCCeEEEEecCCCcccccc----CC-------CcHHHHHHHHH
Confidence 44666666777777777654211111100 0011234899999999988653 34 57888888888
Q ss_pred HHHhhC
Q 016960 138 EKHKKG 143 (380)
Q Consensus 138 ~~~~~~ 143 (380)
+.+.++
T Consensus 226 ~ll~e~ 231 (362)
T 1lbq_A 226 YNIMQK 231 (362)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777654
No 132
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=36.52 E-value=19 Score=36.33 Aligned_cols=54 Identities=17% Similarity=0.263 Sum_probs=35.9
Q ss_pred HHhHHHHHHhhhhcCCEEEEEccCCCchh-HHHHHHHHHhCCCeEeeCCCCccCC
Q 016960 268 QERQDAMYKMVEEKVDLILVVGGWNSSNT-SHLQEIAEDRGIPSYWIDSEKRIGP 321 (380)
Q Consensus 268 ~~RQ~a~~eLa~~~vD~miVVGG~nSSNT-~kL~eia~~~~~~t~~Ie~~~dL~~ 321 (380)
..|++++..|-...+|+++||||-.|-.| .+|.+.+++.|.+.-.|-=+.-||.
T Consensus 91 ~~~~~~~~~l~~~~Id~Lv~IGGdgS~~~A~~L~~~~~~~g~~i~vIGiPkTIDN 145 (419)
T 3hno_A 91 REYERLIEVFKAHDIGYFFYNGGGDSADTCLKVSQLSGTLGYPIQAIHVPKTVDN 145 (419)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEECCTTC
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEecccccC
Confidence 45666777676567999999999888655 5788888776633223333344443
No 133
>2jyx_A Lipoprotein SPR; solution structure, construct optimized, membrane, palmitate, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli K12} PDB: 2k1g_A
Probab=36.35 E-value=36 Score=28.45 Aligned_cols=76 Identities=24% Similarity=0.454 Sum_probs=47.6
Q ss_pred CCcccchhHHHHHHHc-CCcceecceEEEEeCCCCC-cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcC
Q 016960 1 MNQEYTSDIIKKLKEN-GFEYTWGNVKVKLAESYGF-CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMA 78 (380)
Q Consensus 1 ~~~~~~~~~~~~~~~~-~~~~~~g~mkI~lA~~~GF-C~GV~RAI~~a~~~~~~~~~~~Iy~lG~LIHN~~Vv~~L~~~G 78 (380)
|+++-++.|++..+.. |.++.||+.. +.|| |.|.-+ .+++.. ++ |.-|..-....+.|
T Consensus 1 m~~~~r~~i~~~A~~~lG~pY~~Gg~~-----~~g~DCSGlv~---~~~~~~--~G----------i~lpr~s~~q~~~g 60 (136)
T 2jyx_A 1 MNVDVKSRIMDQYADWKGVRYRLGGST-----KKGIDCSGFVQ---RTFREQ--FG----------LELPRSTYEQQEMG 60 (136)
T ss_dssp CCCCHHHHHHHHHHHHSSCCBCTTCEE-----TTEECHHHHHH---HHHHHH--TC----------CCCCSSHHHHGGGS
T ss_pred CCHHHHHHHHHHHHHhCCCCccCCCCC-----CCCeEHHHHHH---HHHHHh--cC----------CCCCCCHHHHHhcC
Confidence 6677788888776665 8999999875 6788 999744 333311 21 11233334455555
Q ss_pred cEEecCCccccccccccCCCEEEEcC
Q 016960 79 VQNIPVEEGKKQFDVVNKGDVVVLPA 104 (380)
Q Consensus 79 v~~v~~~~~~~~~~el~~g~~VIIrA 104 (380)
-. ++ .+++.+||.|+++.
T Consensus 61 ~~-v~-------~~~l~pGDLvff~~ 78 (136)
T 2jyx_A 61 KS-VS-------RSNLRTGDLVLFRA 78 (136)
T ss_dssp EE-CC-------TTTCCTTEEEEEEC
T ss_pred eE-cc-------hHhCCCCCEEEECC
Confidence 33 32 35677899888874
No 134
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Probab=36.27 E-value=1.8e+02 Score=28.05 Aligned_cols=44 Identities=9% Similarity=0.172 Sum_probs=34.3
Q ss_pred ccccccCCCEEEEcCC-CCCHHHHHHHHhcCCcEEec--------cCchhHHH
Q 016960 90 QFDVVNKGDVVVLPAF-GAAVEEMVTLNNKNVQIVDT--------TCPWVSKV 133 (380)
Q Consensus 90 ~~~el~~g~~VIIrAH-Gv~~~~~~~l~~~g~~viDa--------TCP~V~kv 133 (380)
.+..+.+|+.++...| +++++..+.+.++|+.+|+. ..|.+...
T Consensus 81 e~~~l~~~~~l~~~~~~~~~~~~l~~l~~~gi~~ia~e~v~~~~~~~p~~s~~ 133 (377)
T 2vhw_A 81 EYGRLRHGQILFTFLHLAASRACTDALLDSGTTSIAYETVQTADGALPLLAPM 133 (377)
T ss_dssp GGGGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTHHH
T ss_pred HHhhcCCCCEEEEEecccCCHHHHHHHHHcCCeEEEeeeccccCCCccccCch
Confidence 3455567888888887 68899999999999999965 56766543
No 135
>2fb6_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.46A {Bacteroides thetaiotaomicron}
Probab=35.96 E-value=18 Score=29.70 Aligned_cols=99 Identities=10% Similarity=-0.001 Sum_probs=57.1
Q ss_pred eEEEEeCCCCCcccH-HHHHHHHHHHHhhC--CCCceEEeccccc----CHHH---HHHHHHcCcEEecCCccccccccc
Q 016960 25 VKVKLAESYGFCWGV-ERAVQIAYEARKQF--PEEKIWITNEIIH----NPTV---NKRLEEMAVQNIPVEEGKKQFDVV 94 (380)
Q Consensus 25 mkI~lA~~~GFC~GV-~RAI~~a~~~~~~~--~~~~Iy~lG~LIH----N~~V---v~~L~~~Gv~~v~~~~~~~~~~el 94 (380)
||+.+--..|==--. .+|+..|..++++. .+=.||..|+=++ ++.+ .+.|.+.|+.+.-
T Consensus 8 ~K~~ivi~s~d~~~~~~~al~~A~~a~~~G~~~eV~i~~~G~~v~L~~~~~~l~~~~~~~~~~Gv~~~a----------- 76 (117)
T 2fb6_A 8 DKLTILWTTDNKDTVFNMLAMYALNSKNRGWWKHINIILWGASVKLVANDTQVQTEILEMLQSGITIEA----------- 76 (117)
T ss_dssp SEEEEEECCCCHHHHHHTHHHHHHHHHHHTSCSEEEEEECSHHHHHHHHCHHHHHHHHHHHHHTCEEEE-----------
T ss_pred CeEEEEEEcCChHHHHHHHHHHHHHHHHcCCCCcEEEEEECCeeeeccCCccHHHHHHHHHHcCCeEEE-----------
Confidence 554444333321112 45888888888763 2237999999887 3332 3344555555431
Q ss_pred cCCCEEEEcCCCCCHHHHHHHHhcCCcEEeccCchhHHHHHHHHHHhhCCCeEEE
Q 016960 95 NKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSII 149 (380)
Q Consensus 95 ~~g~~VIIrAHGv~~~~~~~l~~~g~~viDaTCP~V~kv~~~v~~~~~~Gy~iII 149 (380)
....-..+|+.++ ++..|+.++.+- ....++.++||+||.
T Consensus 77 ---C~~Ca~~~gv~~~----l~~~gi~l~~~g--------~~l~~~v~~g~~vit 116 (117)
T 2fb6_A 77 ---CQDCCENFGVASI----ITNLGITVRYMG--------IPLTEYLKNGEKILS 116 (117)
T ss_dssp ---EHHHHHHHTCHHH----HHHTTCEEECCH--------HHHHHHHHTTCEEEE
T ss_pred ---eHHHHHHcCCcHH----HHhCCceEcCCc--------HHHHHHHHcCCEEee
Confidence 1112345777443 445688888643 345667789999875
No 136
>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, disease mutation, heme biosynthesis, iron, iron-sulfur, lyase, membrane, metal-BIN mitochondrion; HET: CHD HEM GOL; 1.60A {Homo sapiens} SCOP: c.92.1.1 PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A* 2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 4f4d_A* 3aqi_A* 2pnj_A* 2po5_A* 2po7_A*
Probab=35.87 E-value=1.8e+02 Score=28.52 Aligned_cols=91 Identities=13% Similarity=0.173 Sum_probs=55.3
Q ss_pred cccHHHHHHHHHHHHhhCC---CCceEEecccccCHHHHHHHHHcCcEEecCCccccccc-cccCCCEEEEcCCCCCHHH
Q 016960 36 CWGVERAVQIAYEARKQFP---EEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFD-VVNKGDVVVLPAFGAAVEE 111 (380)
Q Consensus 36 C~GV~RAI~~a~~~~~~~~---~~~Iy~lG~LIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~-el~~g~~VIIrAHGv~~~~ 111 (380)
|..+.-+++.+.++..+.. .-++-+.-..=-+|.-++.|.++=-..+.. +. +..++..+||+|||+|...
T Consensus 132 ~~Ttgs~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~yI~a~a~~I~~~l~~------~~~~~~~~~~LlfSaHgiP~~~ 205 (359)
T 3hcn_A 132 CSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADHILKELDH------FPLEKRSEVVILFSAHSLPMSV 205 (359)
T ss_dssp TTTHHHHHHHHHHHHHHTTCCCSSEEEEECCCTTCHHHHHHHHHHHHHHHTT------SCTTTGGGCEEEEEEECCBHHH
T ss_pred ccchhhHHHHHHHHHHHhccCCCCceEEeCCccCCHHHHHHHHHHHHHHHHh------CCccccCCcEEEEEcCCChHhh
Confidence 4455666666666555421 113556666667777777776552222221 11 1112357999999999986
Q ss_pred HHHHHhcCCcEEeccCchhHHHHHHHHHHhhC
Q 016960 112 MVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKG 143 (380)
Q Consensus 112 ~~~l~~~g~~viDaTCP~V~kv~~~v~~~~~~ 143 (380)
. ++| -||...+++.++.++++
T Consensus 206 ~----~~G-------DpY~~q~~~t~~lv~e~ 226 (359)
T 3hcn_A 206 V----NRG-------DPYPQEVSATVQKVMER 226 (359)
T ss_dssp H----TTT-------CSHHHHHHHHHHHHHHH
T ss_pred c----ccC-------CCHHHHHHHHHHHHHHH
Confidence 5 345 48888888888877664
No 137
>1wn2_A Peptidyl-tRNA hydrolase; riken structural genomics/proteomics initiative, structural genomics; 1.20A {Pyrococcus horikoshii} PDB: 2d3k_A
Probab=35.56 E-value=26 Score=29.17 Aligned_cols=61 Identities=21% Similarity=0.306 Sum_probs=43.6
Q ss_pred EEEEEccCCCchhHHHHHHHHHhCCCeEeeCCC--CccCCCCcchhhhccchhhhhcccCCCCCCEEEEEeCCCCCHHHH
Q 016960 284 LILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE--KRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAV 361 (380)
Q Consensus 284 ~miVVGG~nSSNT~kL~eia~~~~~~t~~Ie~~--~dL~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGITAGASTP~~lI 361 (380)
--+|+..+++.-=..|.+-+++.|.+++.|.++ -|+++ .....+|| .=.|...|
T Consensus 56 ~Kvvlk~~~e~el~~l~~~a~~~gl~~~~i~DAG~Tei~~---------------------gt~Tvlai---gP~~~~~v 111 (121)
T 1wn2_A 56 KKVVVKVESEEELFKLKAEAEKLGLPNALIRDAGLTEIPP---------------------GTVTVLAV---GPAPEEIV 111 (121)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHTTCCEEEEECTTCTTSCT---------------------TCEEEEEE---EEEEHHHH
T ss_pred cEEEEecCCHHHHHHHHHHHHHCCCCEEEEEcCCccccCC---------------------CCEEEEEe---ccCCHHHH
Confidence 456667777666778888888999999999988 45555 23456666 35678888
Q ss_pred HHHHHHH
Q 016960 362 EDVLKKV 368 (380)
Q Consensus 362 ~eV~~~l 368 (380)
++|...|
T Consensus 112 d~itg~L 118 (121)
T 1wn2_A 112 DKVTGNL 118 (121)
T ss_dssp HHHHTTS
T ss_pred HHhcCCC
Confidence 8876544
No 138
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=34.84 E-value=76 Score=32.15 Aligned_cols=93 Identities=12% Similarity=0.142 Sum_probs=49.8
Q ss_pred cceecceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCC
Q 016960 19 EYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGD 98 (380)
Q Consensus 19 ~~~~g~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Iy~lG~LIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~el~~g~ 98 (380)
.|.|..++|.+. |.| |.=++ -+|+-+.+. +-.|... +.=-++...+.|++.|+.+...- ..+.+..+.
T Consensus 14 ~~~~~~~~i~~i---GiG-g~Gms-~lA~~l~~~--G~~V~~s-D~~~~~~~~~~L~~~gi~~~~G~----~~~~~~~~~ 81 (524)
T 3hn7_A 14 NLYFQGMHIHIL---GIC-GTFMG-SLALLARAL--GHTVTGS-DANIYPPMSTQLEQAGVTIEEGY----LIAHLQPAP 81 (524)
T ss_dssp -----CCEEEEE---TTT-SHHHH-HHHHHHHHT--TCEEEEE-ESCCCTTHHHHHHHTTCEEEESC----CGGGGCSCC
T ss_pred ceeecCCEEEEE---Eec-HhhHH-HHHHHHHhC--CCEEEEE-CCCCCcHHHHHHHHCCCEEECCC----CHHHcCCCC
Confidence 467778888766 333 22221 123323332 3344443 33223556789999999987542 123343332
Q ss_pred EEEEcCCCCCHH--HHHHHHhcCCcEE
Q 016960 99 VVVLPAFGAAVE--EMVTLNNKNVQIV 123 (380)
Q Consensus 99 ~VIIrAHGv~~~--~~~~l~~~g~~vi 123 (380)
-+||.+=|+++. .+++++++|+.|+
T Consensus 82 d~vV~Spgi~~~~p~l~~a~~~gi~v~ 108 (524)
T 3hn7_A 82 DLVVVGNAMKRGMDVIEYMLDTGLRYT 108 (524)
T ss_dssp SEEEECTTCCTTSHHHHHHHHHTCCEE
T ss_pred CEEEECCCcCCCCHHHHHHHHCCCcEE
Confidence 255666689864 6678889999986
No 139
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=34.69 E-value=2.3e+02 Score=24.83 Aligned_cols=89 Identities=11% Similarity=0.190 Sum_probs=51.6
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccc-cccccccccHHHHHhHH-HHHHhhhhcCCEEEEEccCCCch
Q 016960 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNE-HFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSN 295 (380)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~-~~~~~nTIC~AT~~RQ~-a~~eLa~~~vD~miVVGG~nSSN 295 (380)
..|+++... ++-.-|..+.+-+.+...+. .- ++.++++ ....++|. .+..|.+..+|.+|+.+...+ .
T Consensus 3 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~~------g~~~~~~~~~--~~~~~~~~~~~~~~~~~~vdgiii~~~~~~-~ 72 (309)
T 2fvy_A 3 TRIGVTIYK-YDDNFMSVVRKAIEQDAKAA------PDVQLLMNDS--QNDQSKQNDQIDVLLAKGVKALAINLVDPA-A 72 (309)
T ss_dssp EEEEEEESC-TTSHHHHHHHHHHHHHHHTC------TTEEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECCSSGG-G
T ss_pred cEEEEEecc-CCcHHHHHHHHHHHHHHHhc------CCeEEEEecC--CCCHHHHHHHHHHHHHcCCCEEEEeCCCcc-h
Confidence 468888764 34456777777776532222 11 2333332 22234443 345555568999998764332 2
Q ss_pred hHHHHHHHHHhCCCeEeeCCC
Q 016960 296 TSHLQEIAEDRGIPSYWIDSE 316 (380)
Q Consensus 296 T~kL~eia~~~~~~t~~Ie~~ 316 (380)
....++.+++.+.|...+.+.
T Consensus 73 ~~~~~~~~~~~~iPvV~~~~~ 93 (309)
T 2fvy_A 73 AGTVIEKARGQNVPVVFFNKE 93 (309)
T ss_dssp HHHHHHHHHTTTCCEEEESSC
T ss_pred hHHHHHHHHHCCCcEEEecCC
Confidence 345556666788999999875
No 140
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=34.35 E-value=44 Score=27.52 Aligned_cols=44 Identities=23% Similarity=0.514 Sum_probs=33.6
Q ss_pred hhhhcCCEEEEEccCCCch-hHHHHHHHHHhCCCeEeeCCCCccC
Q 016960 277 MVEEKVDLILVVGGWNSSN-TSHLQEIAEDRGIPSYWIDSEKRIG 320 (380)
Q Consensus 277 La~~~vD~miVVGG~nSSN-T~kL~eia~~~~~~t~~Ie~~~dL~ 320 (380)
|-++++-++|+-++-.... ..+|-.+|++.+.|-+++.+-.+|-
T Consensus 32 i~~gkakLViiA~D~~~~~~~~~l~~lc~~~~VP~~~v~sk~eLG 76 (121)
T 2lbw_A 32 LRKGEKGLVVIAGDIWPADVISHIPVLCEDHSVPYIFIPSKQDLG 76 (121)
T ss_dssp HHHSCCCEEEECTTCSCTTHHHHHHHHHHHTCCCEEECCCHHHHH
T ss_pred HHcCCceEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHHHHH
Confidence 3335677777666655544 6789999999999999999988875
No 141
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=34.25 E-value=23 Score=33.32 Aligned_cols=56 Identities=21% Similarity=0.346 Sum_probs=39.4
Q ss_pred cccccccccHHHHHhHHHHHHhhhhcCCEEEEEccCCCchh-HHHHHHHHHhCCCeEee
Q 016960 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNT-SHLQEIAEDRGIPSYWI 313 (380)
Q Consensus 256 ~~~~~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGG~nSSNT-~kL~eia~~~~~~t~~I 313 (380)
++.+.|+-|.....-..++.+|... .+..|||+..|+.| ..+..++.+.+.|..--
T Consensus 45 ~~~~~D~~~~~~~~~~~~~~~l~~~--~V~aiiG~~~S~~~~~a~~~i~~~~~ip~is~ 101 (393)
T 3om0_A 45 EVDIFELQRDSQYETTDTMCQILPK--GVVSVLGPSSSPASASTVSHICGEKEIPHIKV 101 (393)
T ss_dssp EEEEEECCSSCHHHHHHHHHHHGGG--CCSCEECCSSCHHHHHHHHHHHHHHTCCEEEC
T ss_pred EEEEEecCCCchhHHHHHHHHHHhc--CcEEEECCCCchhHHHHHHHHHhccCCCeEec
Confidence 4667888886554444556666532 35668899999776 59999999998876543
No 142
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=33.87 E-value=33 Score=34.31 Aligned_cols=59 Identities=19% Similarity=0.338 Sum_probs=35.6
Q ss_pred cCCEEEEEccCCCchhHHHHHHHHHhCCCeEeeCCCCccCCCCcchhhhccchhhhhcccCC----CCCCEEEEEeCCCC
Q 016960 281 KVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLP----KGQITIGITSGAST 356 (380)
Q Consensus 281 ~vD~miVVGG~nSSNT~kL~eia~~~~~~t~~Ie~~~dL~~~~~~~~~~~~~~~~~~~~wl~----~~~~~VGITAGAST 356 (380)
.+|++|+.-|-..-| ..+++.|++.|.+.-.+.++ |+.. .++| .+.-.||||++..|
T Consensus 72 ~~~lVi~at~~~~~n-~~i~~~a~~~~i~vn~~d~~-e~~~-----------------~~~pa~~~~~~l~iaIsT~Gks 132 (457)
T 1pjq_A 72 SCWLAIAATDDDTVN-QRVSDAAESRRIFCNVVDAP-KAAS-----------------FIMPSIIDRSPLMVAVSSGGTS 132 (457)
T ss_dssp TCSEEEECCSCHHHH-HHHHHHHHHTTCEEEETTCT-TSSS-----------------EECCEEEEETTEEEEEECTTSC
T ss_pred CccEEEEcCCCHHHH-HHHHHHHHHcCCEEEECCCc-ccCc-----------------eEeeeEEEeCCeEEEEECCCCC
Confidence 478766644433234 57899999998763333333 2222 2332 34559999998877
Q ss_pred CH
Q 016960 357 PD 358 (380)
Q Consensus 357 P~ 358 (380)
|-
T Consensus 133 p~ 134 (457)
T 1pjq_A 133 PV 134 (457)
T ss_dssp HH
T ss_pred hH
Confidence 75
No 143
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=33.82 E-value=50 Score=27.30 Aligned_cols=46 Identities=17% Similarity=0.366 Sum_probs=32.8
Q ss_pred HHHhhhhcCCEEEEEccCCCchh--HHHHHHHHHhCCCeEeeCCCCccC
Q 016960 274 MYKMVEEKVDLILVVGGWNSSNT--SHLQEIAEDRGIPSYWIDSEKRIG 320 (380)
Q Consensus 274 ~~eLa~~~vD~miVVGG~nSSNT--~kL~eia~~~~~~t~~Ie~~~dL~ 320 (380)
++.+-++++-++|+-++- |.|+ .+|-.+|++++.|.+++.+-.+|-
T Consensus 34 ~kaI~~gka~LVvIA~D~-~p~~i~~~l~~lC~~~~VP~~~v~sk~~LG 81 (113)
T 3jyw_G 34 VALIENKKAKLVLIANDV-DPIELVVFLPALCKKMGVPYAIVKGKARLG 81 (113)
T ss_dssp HHTTTTTCCSEEEECSCC-SSHHHHTTHHHHHHHTTCCCEECSCSTTTH
T ss_pred HHHHHcCCceEEEEeCCC-CHHHHHHHHHHHHHHcCCCEEEECCHHHHH
Confidence 333444556665555544 4554 578899999999999999998885
No 144
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=33.81 E-value=41 Score=26.71 Aligned_cols=42 Identities=14% Similarity=0.282 Sum_probs=32.4
Q ss_pred hhcCCEEEEEccCCCchhHHHHHHHHHhCCCeEeeCCCCccC
Q 016960 279 EEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIG 320 (380)
Q Consensus 279 ~~~vD~miVVGG~nSSNT~kL~eia~~~~~~t~~Ie~~~dL~ 320 (380)
++++-++|+-.+-...-.++|-..|+..+.|.+++.|-.||-
T Consensus 33 ~gka~lViiA~D~~~~~~~~i~~~c~~~~vp~~~~~s~~eLG 74 (101)
T 3v7q_A 33 NARAKLVLLTEDASSNTAKKVTDKCNYYKVPYKKVESRAVLG 74 (101)
T ss_dssp TTCCSEEEEETTSCHHHHHHHHHHHHHTTCCEEEESCHHHHH
T ss_pred cCceeEEEEeccccccchhhhcccccccCCCeeeechHHHHH
Confidence 467777777666655545577788999999999999988885
No 145
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=33.44 E-value=19 Score=33.89 Aligned_cols=110 Identities=10% Similarity=-0.082 Sum_probs=62.2
Q ss_pred ccccccccc-HHHHHhHHHHHHhhhhcCCEEEEEccCCCchhHHHHHHHHHhCCCeEeeCCCCccCCCCcchhhhccchh
Q 016960 256 HFISFNTIC-DATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGEL 334 (380)
Q Consensus 256 ~~~~~nTIC-~AT~~RQ~a~~eLa~~~vD~miVVGG~nSSNT~kL~eia~~~~~~t~~Ie~~~dL~~~~~~~~~~~~~~~ 334 (380)
++.+.|+-| .+..- ..++.+|.. + .+..|||+..|+.+..+..++.+.+.|.+--.++ .+.. ....|+....+.
T Consensus 42 ~~~~~D~~~~d~~~a-~~~~~~l~~-~-~V~aiiG~~~S~~~~a~~~~~~~~~iP~is~~~~-~~~~-~~~~~~~~p~~~ 116 (384)
T 3saj_A 42 LPQIDIVNISDSFEM-TYRFCSQFS-K-GVYAIFGFYERRTVNMLTSFCGALHVCFITPSFP-VDTS-NQFVLQLRPELQ 116 (384)
T ss_dssp EEEEEECCTTCHHHH-HHHHHHHHH-T-TCSCEEECCCHHHHHHHHHHHHHHTCCEEECSCC-CSSC-CTTEEECSCCCH
T ss_pred ceeeEecccCchhhH-HHHHHHHHh-c-CeEEEECCCCHHHHHHHHHHhccCCCCeEecccc-CcCc-cCceEEecccHH
Confidence 455778888 44433 345556663 3 5667899999999999999999999886544322 2222 122222211111
Q ss_pred hhhcccCC-CCCCEEEEEeCCCCCHHHHHHHHHHHHh
Q 016960 335 VEKENWLP-KGQITIGITSGASTPDKAVEDVLKKVFE 370 (380)
Q Consensus 335 ~~~~~wl~-~~~~~VGITAGASTP~~lI~eV~~~l~~ 370 (380)
.....++. -+.++|+|..--.--..+.+.+.+.+.+
T Consensus 117 ~a~~~~~~~~g~~~v~ii~d~~~g~~~~~~~~~~~~~ 153 (384)
T 3saj_A 117 EALISIIDHYKWQTFVYIYDADRGLSVLQRVLDTAAE 153 (384)
T ss_dssp HHHHHHHHHTTCCEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCcEEEEEEeCchhHHHHHHHHHHhhh
Confidence 11111110 1578888887333344556666665553
No 146
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=33.21 E-value=32 Score=31.47 Aligned_cols=57 Identities=16% Similarity=0.251 Sum_probs=38.7
Q ss_pred ccccccccccHHHHHhHHHHHHhhhhcCCEEEEEccCC-CchhHHHHHHHHHhCCCeEeeCCC
Q 016960 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWN-SSNTSHLQEIAEDRGIPSYWIDSE 316 (380)
Q Consensus 255 ~~~~~~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGG~n-SSNT~kL~eia~~~~~~t~~Ie~~ 316 (380)
+++..|+.- . .+.+.+.+.+ .++|++||||..- -.-..+|...++..|.+...|.-.
T Consensus 146 P~vv~FGE~-p---~~~~~a~~~~-~~adl~lviGTSl~V~Pa~~l~~~a~~~g~~~i~iN~~ 203 (235)
T 1s5p_A 146 PHVVWFGEM-P---LGMDEIYMAL-SMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLE 203 (235)
T ss_dssp EEECCTTSC-C---SSHHHHHHHH-HHCSEEEEESCCTTEETGGGHHHHHHHTTCEEEEEESS
T ss_pred CcEEEeCCC-H---HHHHHHHHHH-hcCCEEEEECcCCchhhHHHHHHHHHHcCCeEEEEECC
Confidence 456677766 3 2344455555 4799999999743 224578999998888888777643
No 147
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=32.08 E-value=41 Score=31.51 Aligned_cols=94 Identities=13% Similarity=0.209 Sum_probs=57.3
Q ss_pred cccccccccHHHHHhHHHHHHhh-hhcCCEEEEEccCCCchhHHHHHHHHHhCCCeEeeCCCCccCCCCcchhhh---cc
Q 016960 256 HFISFNTICDATQERQDAMYKMV-EEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL---MH 331 (380)
Q Consensus 256 ~~~~~nTIC~AT~~RQ~a~~eLa-~~~vD~miVVGG~nSSNT~kL~eia~~~~~~t~~Ie~~~dL~~~~~~~~~~---~~ 331 (380)
++.+.|+-|......+ ++.+|. +..||++ || ..|+.+..+.+++++.+.|.+...+..++.. ....|.. -.
T Consensus 51 ~l~~~D~~~~~~~a~~-~~~~li~~~~V~~i--iG-~~s~~~~a~~~~~~~~~iP~i~~~~~~~~~~-~~~~f~~~~~~~ 125 (391)
T 3eaf_A 51 NYIKRDYAYNPTTAEE-YYREFRDRYGVIAI--IG-WGTADTEKLSDQVDTDKITYISASYSAKLLV-KPFNFYPAPDYS 125 (391)
T ss_dssp EEEEEECTTCHHHHHH-HHHHHHHTTCCSEE--EE-CCHHHHHHHHHHHHHHTCEEEESCCCGGGTT-STTEECSSCCHH
T ss_pred EEEEeCCCCCHHHHHH-HHHHHHhhcCcEEE--EE-cCcHHHHHHHHHHhhcCCeEEecccchhhcC-CCcEEEeCCCHH
Confidence 5668888888766544 445565 4567765 56 6788899999999999988877665544421 1112221 11
Q ss_pred chhhhhcccCCC--CCCEEEEEeCC
Q 016960 332 GELVEKENWLPK--GQITIGITSGA 354 (380)
Q Consensus 332 ~~~~~~~~wl~~--~~~~VGITAGA 354 (380)
.+......|+.+ +.++|++..+.
T Consensus 126 ~~~~~~~~~l~~~~g~~~iaii~~~ 150 (391)
T 3eaf_A 126 TQACSGLAFLASEFGQGKLALAYDS 150 (391)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEECT
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEec
Confidence 111222244321 68899999874
No 148
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=31.99 E-value=52 Score=30.90 Aligned_cols=58 Identities=10% Similarity=0.135 Sum_probs=40.1
Q ss_pred cCCCEEE-EcCCCCCHHHHHHHHhcC--CcE-EeccCchhHHHHHHHHHHhhCCCeEEEEecC
Q 016960 95 NKGDVVV-LPAFGAAVEEMVTLNNKN--VQI-VDTTCPWVSKVWTSVEKHKKGDYTSIIHGKY 153 (380)
Q Consensus 95 ~~g~~VI-IrAHGv~~~~~~~l~~~g--~~v-iDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~ 153 (380)
++|++|+ +-.-|+...+...+.++| +.| +|=|-|+-.- +..+.++.+.|-.+.++++.
T Consensus 108 ~~g~~IlT~~~s~Tv~~~l~~a~~~~~~~~V~v~etrP~~qG-~~~a~~L~~~gI~vtli~ds 169 (276)
T 1vb5_A 108 DDGDVIITHSFSSTVLEIIRTAKERKKRFKVILTESSPDYEG-LHLARELEFSGIEFEVITDA 169 (276)
T ss_dssp CTTEEEECCSCCHHHHHHHHHHHHTTCCEEEEEECCTTTTHH-HHHHHHHHHTTCCEEEECGG
T ss_pred cCCCEEEEeCCChHHHHHHHHHHHcCCeEEEEEeCCCcchhh-HHHHHHHHHCCCCEEEEcHH
Confidence 3576554 333334444555554534 444 7789999877 88999999999999999964
No 149
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=31.86 E-value=91 Score=29.74 Aligned_cols=120 Identities=12% Similarity=0.063 Sum_probs=60.9
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhHHHHHHhhhhcCCEEEEEccCCCchhH
Q 016960 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTS 297 (380)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGG~nSSNT~ 297 (380)
..|+++.- ++-.-|..+.+-+.+...+. + -++.+++ .. +-.+.+..|.+..+|.+|+. .++.
T Consensus 26 ~~Igvv~~--~~~~f~~~l~~gi~~~a~~~-g-----~~~~i~~----~~-~~~~~i~~l~~~~vDGiIi~-----~~~~ 87 (412)
T 4fe7_A 26 HRITLLFN--ANKAYDRQVVEGVGEYLQAS-Q-----SEWDIFI----EE-DFRARIDKIKDWLGDGVIAD-----FDDK 87 (412)
T ss_dssp EEEEEECC--TTSHHHHHHHHHHHHHHHHH-T-----CCEEEEE----CC--CC--------CCCSEEEEE-----TTCH
T ss_pred ceEEEEeC--CcchhhHHHHHHHHHHHHhc-C-----CCeEEEe----cC-CccchhhhHhcCCCCEEEEe-----cCCh
Confidence 57999883 56666778887776643332 2 1222222 11 11233555655689999982 2345
Q ss_pred HHHHHHHHhCCCeEeeCCCCcc----CCCCcchhh-hccchhhhhcccC-CCCCCEEEEEeCCCCC
Q 016960 298 HLQEIAEDRGIPSYWIDSEKRI----GPGNKIAYK-LMHGELVEKENWL-PKGQITIGITSGASTP 357 (380)
Q Consensus 298 kL~eia~~~~~~t~~Ie~~~dL----~~~~~~~~~-~~~~~~~~~~~wl-~~~~~~VGITAGASTP 357 (380)
.+.+.+.+.+.|...|.+..+- +...-+... ...+.. -.++| ..|.++||+.+|....
T Consensus 88 ~~~~~l~~~~iPvV~i~~~~~~~~~~~~~~~V~~D~~~~g~~--a~~~L~~~G~r~I~~i~~~~~~ 151 (412)
T 4fe7_A 88 QIEQALADVDVPIVGVGGSYHLAESYPPVHYIATDNYALVES--AFLHLKEKGVNRFAFYGLPESS 151 (412)
T ss_dssp HHHHHHTTCCSCEEEEEECCSSGGGSCSSEEEEECHHHHHHH--HHHHHHHTTCCEEEEECCCTTS
T ss_pred HHHHHHhhCCCCEEEecCCccccccCCCCCEEEeCHHHHHHH--HHHHHHHcCCceEEEecccccc
Confidence 5667777889999999764321 110001100 011111 01222 2489999999887653
No 150
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=31.24 E-value=1.8e+02 Score=25.44 Aligned_cols=126 Identities=12% Similarity=-0.017 Sum_probs=62.8
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhHHHHHHhhhhcCCEEEEEccCCCchhH
Q 016960 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTS 297 (380)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGG~nSSNT~ 297 (380)
..|+++... ++-.-|..+.+-+.+...+. + -++.++++ ....++|.. + .+|.+|+.+...+ .
T Consensus 9 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~--~~~~~~~~~---~---~vdgiI~~~~~~~--~- 70 (277)
T 3cs3_A 9 NIIGVYLAD-YGGSFYGELLEGIKKGLALF-D-----YEMIVCSG--KKSHLFIPE---K---MVDGAIILDWTFP--T- 70 (277)
T ss_dssp CEEEEEECS-SCTTTHHHHHHHHHHHHHTT-T-----CEEEEEES--TTTTTCCCT---T---TCSEEEEECTTSC--H-
T ss_pred cEEEEEecC-CCChhHHHHHHHHHHHHHHC-C-----CeEEEEeC--CCCHHHHhh---c---cccEEEEecCCCC--H-
Confidence 579998754 44456777777776543222 2 12322221 111222221 1 6999999886433 2
Q ss_pred HHHHHHHHhCCCeEeeCCCCccCCCCcchhhh-ccchhhhhcccC-CCCCCEEEEEeCCCCCHHHHHH
Q 016960 298 HLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGASTPDKAVED 363 (380)
Q Consensus 298 kL~eia~~~~~~t~~Ie~~~dL~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGASTP~~lI~e 363 (380)
..++.+.+.+.|...+.+..+-....-+...- ..+.. ..+|| ..|.++||+.+|........+.
T Consensus 71 ~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~--a~~~L~~~G~~~i~~i~~~~~~~~~~~R 136 (277)
T 3cs3_A 71 KEIEKFAERGHSIVVLDRTTEHRNIRQVLLDNRGGATQ--AIEQFVNVGSKKVLLLSGPEKGYDSQER 136 (277)
T ss_dssp HHHHHHHHTTCEEEESSSCCCSTTEEEEEECHHHHHHH--HHHHHHHTTCSCEEEEECCTTSHHHHHH
T ss_pred HHHHHHHhcCCCEEEEecCCCCCCCCEEEeCcHHHHHH--HHHHHHHcCCceEEEEeCCccCccHHHH
Confidence 33344556788999887643211100011000 11111 11233 1378999999987544333333
No 151
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=31.20 E-value=2.3e+02 Score=23.52 Aligned_cols=84 Identities=17% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhCCCCceEEec---ccccCHHHHHHHHHcCcEEecCCccccccccccCCCEE-EEcCCCCCHH---HH
Q 016960 40 ERAVQIAYEARKQFPEEKIWITN---EIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVV-VLPAFGAAVE---EM 112 (380)
Q Consensus 40 ~RAI~~a~~~~~~~~~~~Iy~lG---~LIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~el~~g~~V-IIrAHGv~~~---~~ 112 (380)
...++.+-+.+.+ .++||++| .-.=-.....+|...|..+.--.+. ....+.++|.| +|+.-|-+++ ..
T Consensus 27 ~~~i~~~~~~i~~--a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~--~~~~~~~~d~vi~iS~sG~t~~~~~~~ 102 (180)
T 1jeo_A 27 KNKLDSLIDRIIK--AKKIFIFGVGRSGYIGRCFAMRLMHLGFKSYFVGET--TTPSYEKDDLLILISGSGRTESVLTVA 102 (180)
T ss_dssp HHHHHHHHHHHHH--CSSEEEECCHHHHHHHHHHHHHHHHTTCCEEETTST--TCCCCCTTCEEEEEESSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCEEEEEeecHHHHHHHHHHHHHHHcCCeEEEeCCC--ccccCCCCCEEEEEeCCCCcHHHHHHH
Q ss_pred HHHHhcCCcEEeccC
Q 016960 113 VTLNNKNVQIVDTTC 127 (380)
Q Consensus 113 ~~l~~~g~~viDaTC 127 (380)
+.++++|..+|=-|+
T Consensus 103 ~~ak~~g~~vi~IT~ 117 (180)
T 1jeo_A 103 KKAKNINNNIIAIVC 117 (180)
T ss_dssp HHHHTTCSCEEEEES
T ss_pred HHHHHCCCcEEEEeC
No 152
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=30.98 E-value=29 Score=32.80 Aligned_cols=59 Identities=12% Similarity=0.149 Sum_probs=36.7
Q ss_pred cCCEEEEEccCCCchhHHHHHHHHHh---CCCeEeeCCCCccCCCCcchhhhccchhhhhcccCC----CCC-CEEEEEe
Q 016960 281 KVDLILVVGGWNSSNTSHLQEIAEDR---GIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLP----KGQ-ITIGITS 352 (380)
Q Consensus 281 ~vD~miVVGG~nSSNT~kL~eia~~~---~~~t~~Ie~~~dL~~~~~~~~~~~~~~~~~~~~wl~----~~~-~~VGITA 352 (380)
.+|++++.-|-.. -...+++.|++. +.+.-.+.+++.-+ -+|| .+. -.||||+
T Consensus 106 ~adlViaat~d~~-~n~~I~~~Ar~~f~~~i~VNvvd~pel~~------------------f~~Pa~~~~g~~l~IaIST 166 (274)
T 1kyq_A 106 AWYIIMTCIPDHP-ESARIYHLCKERFGKQQLVNVADKPDLCD------------------FYFGANLEIGDRLQILIST 166 (274)
T ss_dssp CEEEEEECCSCHH-HHHHHHHHHHHHHCTTSEEEETTCGGGBS------------------EECCEEEEETTTEEEEEEE
T ss_pred CeEEEEEcCCChH-HHHHHHHHHHHhcCCCcEEEECCCcccCe------------------eEeeeEEEeCCCEEEEEEC
Confidence 4666666655333 346899999997 65554455543322 2222 345 5999999
Q ss_pred CCCCCH
Q 016960 353 GASTPD 358 (380)
Q Consensus 353 GASTP~ 358 (380)
|..+|-
T Consensus 167 ~Gksp~ 172 (274)
T 1kyq_A 167 NGLSPR 172 (274)
T ss_dssp SSSCHH
T ss_pred CCCCcH
Confidence 988874
No 153
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=30.93 E-value=1.4e+02 Score=24.93 Aligned_cols=69 Identities=9% Similarity=-0.012 Sum_probs=49.3
Q ss_pred CHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCc-EEeccCchhHHHHHHHHHHhhCCC
Q 016960 67 NPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQ-IVDTTCPWVSKVWTSVEKHKKGDY 145 (380)
Q Consensus 67 N~~Vv~~L~~~Gv~~v~~~~~~~~~~el~~g~~VIIrAHGv~~~~~~~l~~~g~~-viDaTCP~V~kv~~~v~~~~~~Gy 145 (380)
+..+++.|+++|+.++- + +|+ -.......+++.|+. +++..+|.-.-+....+++.-.-.
T Consensus 40 ~~~~l~~L~~~G~~~~i----------~-Tg~--------~~~~~~~~~~~lgl~~~~~~~k~k~~~~~~~~~~~~~~~~ 100 (180)
T 1k1e_A 40 DGLGIKMLMDADIQVAV----------L-SGR--------DSPILRRRIADLGIKLFFLGKLEKETACFDLMKQAGVTAE 100 (180)
T ss_dssp HHHHHHHHHHTTCEEEE----------E-ESC--------CCHHHHHHHHHHTCCEEEESCSCHHHHHHHHHHHHTCCGG
T ss_pred hHHHHHHHHHCCCeEEE----------E-eCC--------CcHHHHHHHHHcCCceeecCCCCcHHHHHHHHHHcCCCHH
Confidence 55788999999987552 1 121 234566677777875 578889988888888877755556
Q ss_pred eEEEEecCC
Q 016960 146 TSIIHGKYS 154 (380)
Q Consensus 146 ~iIIiG~~~ 154 (380)
.++.|||..
T Consensus 101 ~~~~vGD~~ 109 (180)
T 1k1e_A 101 QTAYIGDDS 109 (180)
T ss_dssp GEEEEECSG
T ss_pred HEEEECCCH
Confidence 899999886
No 154
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=30.30 E-value=42 Score=30.80 Aligned_cols=56 Identities=14% Similarity=0.197 Sum_probs=34.5
Q ss_pred ccccccccccHHHHHhHHHHHHhhhhcCCEEEEEccCCCc---hhHHHHHHHHHhCCCeEeeCC
Q 016960 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSS---NTSHLQEIAEDRGIPSYWIDS 315 (380)
Q Consensus 255 ~~~~~~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGG~nSS---NT~kL~eia~~~~~~t~~Ie~ 315 (380)
+++..|+.-=+. ..-+.+.+.+ .++|++||||- |- -..+|...++..|.+.+.|.-
T Consensus 157 P~vv~FgE~lp~--~~~~~a~~~~-~~adl~lviGT--Sl~V~P~~~l~~~a~~~g~~~i~IN~ 215 (246)
T 1yc5_A 157 PNIVFFGENLPQ--DALREAIGLS-SRASLMIVLGS--SLVVYPAAELPLITVRSGGKLVIVNL 215 (246)
T ss_dssp EEECCBTSBCCH--HHHHHHHHHH-HHCSEEEEESC--CSCEETGGGHHHHHHHHTCEEEEECS
T ss_pred cceEECCCCCCH--HHHHHHHHHH-hcCCEEEEECC--CCcchhHHHHHHHHHHcCCeEEEEeC
Confidence 355555553221 1122333444 37999999994 42 345788889888888887764
No 155
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=30.26 E-value=30 Score=33.15 Aligned_cols=56 Identities=9% Similarity=0.103 Sum_probs=38.4
Q ss_pred cccccccccHHHHHhHHHHHHhhhh-cCCEEEEEccCCCchhHHHHHHHHHhCCCeEe
Q 016960 256 HFISFNTICDATQERQDAMYKMVEE-KVDLILVVGGWNSSNTSHLQEIAEDRGIPSYW 312 (380)
Q Consensus 256 ~~~~~nTIC~AT~~RQ~a~~eLa~~-~vD~miVVGG~nSSNT~kL~eia~~~~~~t~~ 312 (380)
++.+.|+-|... --+..+..++.. +-.+..|||+..|+.+..+..++...+.|.+-
T Consensus 57 ~~~~~D~~~~~~-a~~~~~~~~~~~~~~~v~aiiG~~~S~~~~~v~~~~~~~~ip~is 113 (441)
T 1jdp_A 57 QVAYEDSDCGNR-ALFSLVDRVAAARGAKPDLILGPVCEYAAAPVARLASHWDLPMLS 113 (441)
T ss_dssp EEEEEECTTSTH-HHHHHHHHHHHTTTCCCSEEECCCSHHHHHHHHHHHHHHTCCEEE
T ss_pred EEEEecCCCchh-HHHHHHHHHHhhccCCceEEECCCchhhHHHHHHHHhhcCCcEEc
Confidence 456789999865 212333333311 11466788999999999999999999888653
No 156
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=30.23 E-value=2.7e+02 Score=24.17 Aligned_cols=125 Identities=22% Similarity=0.240 Sum_probs=63.9
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhH-HHHHHhhhhcCCEEEEEccCCCchh
Q 016960 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (380)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGG~nSSNT 296 (380)
..|+++.-.. +-.-|..+.+-+.+...+. + -++.++++ ....++| +.+..|.+..+|.+|+.+...+.
T Consensus 8 ~~Ig~i~~~~-~~~~~~~~~~gi~~~~~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~-- 76 (289)
T 1dbq_A 8 KSIGLLATSS-EAAYFAEIIEAVEKNCFQK-G-----YTLILGNA--WNNLEKQRAYLSMMAQKRVDGLLVMCSEYPE-- 76 (289)
T ss_dssp CEEEEEESCT-TSHHHHHHHHHHHHHHHHH-T-----CEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEEECSCCCH--
T ss_pred CEEEEEeCCC-CChHHHHHHHHHHHHHHHc-C-----CeEEEEcC--CCChHHHHHHHHHHHhCCCCEEEEEeccCCH--
Confidence 4798887543 4456777777776543332 2 12333221 2333444 33555555689999998765432
Q ss_pred HHHHHHHHH-hCCCeEeeCCCCccCC-CCcchhhhccchhhhhcccC-CCCCCEEEEEeCCC
Q 016960 297 SHLQEIAED-RGIPSYWIDSEKRIGP-GNKIAYKLMHGELVEKENWL-PKGQITIGITSGAS 355 (380)
Q Consensus 297 ~kL~eia~~-~~~~t~~Ie~~~dL~~-~~~~~~~~~~~~~~~~~~wl-~~~~~~VGITAGAS 355 (380)
.+.+..++ .+.|...+.+..+=.. ..-+.. ..........+|| ..|.++||+-.|..
T Consensus 77 -~~~~~l~~~~~iPvV~~~~~~~~~~~~~~V~~-d~~~~~~~~~~~L~~~G~~~i~~i~~~~ 136 (289)
T 1dbq_A 77 -PLLAMLEEYRHIPMVVMDWGEAKADFTDAVID-NAFEGGYMAGRYLIERGHREIGVIPGPL 136 (289)
T ss_dssp -HHHHHHHHTTTSCEEEEECSSCCSSSCEEEEE-CHHHHHHHHHHHHHHTTCCSEEEECCC-
T ss_pred -HHHHHHHhccCCCEEEEccCCCccCcCCEEEe-CcHHHHHHHHHHHHHCCCCeEEEEecCC
Confidence 34444444 6889988876432111 001110 0000011111333 13789999998753
No 157
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=30.17 E-value=1.6e+02 Score=23.85 Aligned_cols=86 Identities=10% Similarity=0.024 Sum_probs=54.7
Q ss_pred HHHHcCCcceecceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEeccccc-CHHH-HHHHHHcCcEEecCCcccc
Q 016960 12 KLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIH-NPTV-NKRLEEMAVQNIPVEEGKK 89 (380)
Q Consensus 12 ~~~~~~~~~~~g~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Iy~lG~LIH-N~~V-v~~L~~~Gv~~v~~~~~~~ 89 (380)
++.++..+...|.|.|- .|.- ....+..+...|.|-+ ++.. .+.+++.|-.+....+.
T Consensus 10 ~~~~~~~p~~~g~~~~p----~~~~--------------~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Gg~v~~sVSk-- 69 (109)
T 2k6g_A 10 SYLNREGPKALGSKEIP----KGAE--------------NCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSK-- 69 (109)
T ss_dssp HHHTCCCCSSTTTSCCC----CCCT--------------TTTTTCEEEEESBCSSCCHHHHHHHHHHTTCEEESSCCT--
T ss_pred HhhcccCCCCCCcccCC----CCCC--------------CCCCCCEEEEeeeCCCCCHHHHHHHHHHcCCEeeCcccC--
Confidence 35566777788877652 2210 0123567999999954 5444 45568889998875321
Q ss_pred ccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEe
Q 016960 90 QFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVD 124 (380)
Q Consensus 90 ~~~el~~g~~VIIrAHGv~~~~~~~l~~~g~~viD 124 (380)
.=|.||.-. ...+.-++.|++.|+.|||
T Consensus 70 ------kTd~LV~G~-~~g~sK~~kA~~lgI~Ii~ 97 (109)
T 2k6g_A 70 ------KTNYLVMGR-DSGQSKSDKAAALGTKIID 97 (109)
T ss_dssp ------TCCEEEECB-CCCHHHHHHHHHHTCEEEC
T ss_pred ------CceEEEECC-CCChHHHHHHHHcCCeEEe
Confidence 124455543 3456778899999999987
No 158
>1rlk_A Hypothetical protein TA0108; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; HET: SO4; 1.95A {Thermoplasma acidophilum} SCOP: c.131.1.1
Probab=30.09 E-value=37 Score=28.05 Aligned_cols=62 Identities=15% Similarity=0.274 Sum_probs=43.9
Q ss_pred CEEEEEccCCCchhHHHHHHHHHhCCCeEeeCCC--CccCCCCcchhhhccchhhhhcccCCCCCCEEEEEeCCCCCHHH
Q 016960 283 DLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE--KRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKA 360 (380)
Q Consensus 283 D~miVVGG~nSSNT~kL~eia~~~~~~t~~Ie~~--~dL~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGITAGASTP~~l 360 (380)
---+|+-.+++.-=..|.+-+++.|.+++.|.++ -|+++ .....+|| .=.|...
T Consensus 51 ~~kiVlk~~~e~~l~~l~~~a~~~gl~~~~v~DAG~Tei~~---------------------gt~Tvlai---gP~~~~~ 106 (117)
T 1rlk_A 51 QRKIVVKVNDLDEIMEIKRMADSMGIVNEIVQDRGYTQVEP---------------------GTITCIGL---GPDEEEK 106 (117)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHTCCEEEEECCCSSSSSC---------------------CCEEEEEE---EEEEHHH
T ss_pred CeEEEEecCCHHHHHHHHHHHHHCCCCEEEEEeCCccCcCC---------------------CCEEEEEe---CcCCHHH
Confidence 3456677777766778888888899999999988 45554 23446666 3567788
Q ss_pred HHHHHHHH
Q 016960 361 VEDVLKKV 368 (380)
Q Consensus 361 I~eV~~~l 368 (380)
|++|...|
T Consensus 107 vd~itg~l 114 (117)
T 1rlk_A 107 LDKITGKY 114 (117)
T ss_dssp HHHHHTTS
T ss_pred HHHHcCCC
Confidence 88876544
No 159
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=29.92 E-value=50 Score=30.49 Aligned_cols=72 Identities=18% Similarity=0.275 Sum_probs=44.7
Q ss_pred HHHhhhhcCCEEEEEccCCCc---hhHHHHHHHHHhCCCeEeeCCCCccCCCCcchhhhccchhhhhcccCCCCCCEEEE
Q 016960 274 MYKMVEEKVDLILVVGGWNSS---NTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGI 350 (380)
Q Consensus 274 ~~eLa~~~vD~miVVGG~nSS---NT~kL~eia~~~~~~t~~Ie~~~dL~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGI 350 (380)
+.+.+ .++|++||||- |- -..+|...++..|.+.+.|.-.. -+. .....+.|
T Consensus 177 a~~~~-~~adl~lviGT--Sl~V~P~~~l~~~a~~~g~~~i~iN~~~-~~~---------------------d~~~~~~i 231 (253)
T 1ma3_A 177 AIEEA-KHCDAFMVVGS--SLVVYPAAELPYIAKKAGAKMIIVNAEP-TMA---------------------DPIFDVKI 231 (253)
T ss_dssp HHHHH-HHCSEEEEESC--CSCEETGGGHHHHHHHHTCEEEEEESSC-CTT---------------------GGGCSEEE
T ss_pred HHHHH-HhCCEEEEECC--CceeccHHHHHHHHHHcCCeEEEEeCCC-CCC---------------------CCceeEEE
Confidence 33444 47999999994 42 34578888988888887776432 111 01124556
Q ss_pred EeCCCCCHHHHHHHHHHHHhhhh
Q 016960 351 TSGASTPDKAVEDVLKKVFEIKR 373 (380)
Q Consensus 351 TAGASTP~~lI~eV~~~l~~~~~ 373 (380)
...+ +.++.++++.|.+++-
T Consensus 232 ~~~~---~~~l~~l~~~l~~~~~ 251 (253)
T 1ma3_A 232 IGKA---GEVLPKIVEEVKRLRS 251 (253)
T ss_dssp ESCH---HHHHHHHHHHHHHHTC
T ss_pred eCCH---HHHHHHHHHHHHHHhh
Confidence 5544 4677777777766543
No 160
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=29.38 E-value=54 Score=30.15 Aligned_cols=39 Identities=31% Similarity=0.446 Sum_probs=27.7
Q ss_pred HHhhhhcCCEEEEEccCCCch---hHHHHHHHHHhCCCeEeeCCC
Q 016960 275 YKMVEEKVDLILVVGGWNSSN---TSHLQEIAEDRGIPSYWIDSE 316 (380)
Q Consensus 275 ~eLa~~~vD~miVVGG~nSSN---T~kL~eia~~~~~~t~~Ie~~ 316 (380)
.+.+ .++|++||||- |-. ..+|...++..|.+.+.|.-.
T Consensus 172 ~~~~-~~adlllviGT--Sl~V~P~~~l~~~a~~~g~~~i~IN~~ 213 (249)
T 1m2k_A 172 MREV-ERADVIIVAGT--SAVVQPAASLPLIVKQRGGAIIEINPD 213 (249)
T ss_dssp HHHH-HHCSEEEEESC--CSCSTTGGGHHHHHHHTTCEEEEECSS
T ss_pred HHHH-hcCCEEEEEcc--CCCccchHHHHHHHHHcCCeEEEEeCC
Confidence 3444 36999999994 322 347888898888888877653
No 161
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=29.20 E-value=3.2e+02 Score=24.65 Aligned_cols=132 Identities=14% Similarity=0.146 Sum_probs=68.0
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhHH-HHHHhhhhcCCEEEEEccCCCchh
Q 016960 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNT 296 (380)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-a~~eLa~~~vD~miVVGG~nSSNT 296 (380)
..|+++.-. +.-.-|..+.+-+.+...+. + -++.++++ ....++|. .+..|....+|.+|+.+...+ .
T Consensus 64 ~~Ig~i~~~-~~~~~~~~~~~gi~~~~~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~--~ 132 (332)
T 2o20_A 64 TTVGVILPT-ITSTYFAAITRGVDDIASMY-K-----YNMILANS--DNDVEKEEKVLETFLSKQVDGIVYMGSSLD--E 132 (332)
T ss_dssp CEEEEEESC-TTCHHHHHHHHHHHHHHHHT-T-----CEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECSSCCC--H
T ss_pred CEEEEEeCC-CCCcHHHHHHHHHHHHHHHc-C-----CEEEEEEC--CCChHHHHHHHHHHHhCCCCEEEEeCCCCC--H
Confidence 478888754 34456777777776543322 2 12333221 22234443 345555568999999886433 2
Q ss_pred HHHHHHHHHhCCCeEeeCCCCccCCCCcchhhh-ccchhhhhcccC-CCCCCEEEEEeCCCCCHHHHHH
Q 016960 297 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGASTPDKAVED 363 (380)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~~dL~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGASTP~~lI~e 363 (380)
. .++.+.+.+.|...+.+..+-+...-+...- ..+.. --++| ..|.++||+-+|...-.+..+.
T Consensus 133 ~-~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~--a~~~L~~~G~~~I~~i~~~~~~~~~~~R 198 (332)
T 2o20_A 133 K-IRTSLKNSRTPVVLVGTIDGDKEIPSVNIDYHLAAYQ--STKKLIDSGNKKIAYIMGSLKDVENTER 198 (332)
T ss_dssp H-HHHHHHHHCCCEEEESCCCTTSCSCEEECCHHHHHHH--HHHHHHHTTCSSEEEECSCTTSHHHHHH
T ss_pred H-HHHHHHhCCCCEEEEccccCCCCCCEEEeChHHHHHH--HHHHHHHCCCCeEEEEeCCcccccHHHH
Confidence 2 3444456789999998743211101111100 11111 11222 1478999999887543333333
No 162
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=29.20 E-value=3.2e+02 Score=24.71 Aligned_cols=131 Identities=22% Similarity=0.267 Sum_probs=66.1
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhH-HHHHHhhhhcCCEEEEEccCCCchh
Q 016960 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (380)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGG~nSSNT 296 (380)
..|+++.... .-.-|..+.+-+.+...+. + -++.+.++ ....++| +.+..|.+..+|.+|+.+...+.
T Consensus 59 ~~Igvi~~~~-~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-- 127 (340)
T 1qpz_A 59 KSIGLLATSS-EAAYFAEIIEAVEKNCFQK-G-----YTLILGNA--WNNLEKQRAYLSMMAQKRVDGLLVMCSEYPE-- 127 (340)
T ss_dssp SEEEEEESCS-CSHHHHHHHHHHHHHHHHT-T-----CEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECCSCCCH--
T ss_pred CEEEEEeCCC-CChHHHHHHHHHHHHHHHc-C-----CEEEEEeC--CCCHHHHHHHHHHHHcCCCCEEEEeCCCCCh--
Confidence 4799887543 4456777777776543322 2 12333222 2233444 33555555689999998765432
Q ss_pred HHHHHHHHH-hCCCeEeeCCCCccCC-CCcchhhh-ccchhhhhcccCC-CCCCEEEEEeCCCCCHHHHH
Q 016960 297 SHLQEIAED-RGIPSYWIDSEKRIGP-GNKIAYKL-MHGELVEKENWLP-KGQITIGITSGASTPDKAVE 362 (380)
Q Consensus 297 ~kL~eia~~-~~~~t~~Ie~~~dL~~-~~~~~~~~-~~~~~~~~~~wl~-~~~~~VGITAGASTP~~lI~ 362 (380)
.+.+..++ .+.|...+.+..+-.. ..-+...- ..+.. .-+||- .|.++||+-+|.....+..+
T Consensus 128 -~~~~~l~~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~~~~--a~~~L~~~G~~~I~~i~g~~~~~~~~~ 194 (340)
T 1qpz_A 128 -PLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYM--AGRYLIERGHREIGVIPGPLERNTGAG 194 (340)
T ss_dssp -HHHHHHHTTTTSCEEEEEESSCCCSSSEEEECCHHHHHHH--HHHHHHHHTCCCEEEECCCTTSHHHHH
T ss_pred -HHHHHHHhhCCCCEEEEecccCCCCCCCEEEECHHHHHHH--HHHHHHHCCCCEEEEEeCCCccccHHH
Confidence 23444434 6789888875422111 00111100 11111 112331 37899999988654333333
No 163
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=28.95 E-value=1.7e+02 Score=25.56 Aligned_cols=121 Identities=11% Similarity=0.089 Sum_probs=61.2
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhH-HHHHHhhhhcCCEEEEEccCCCchh
Q 016960 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 296 (380)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGG~nSSNT 296 (380)
..|+++... ++-.-|..+.+-+.+...+. + -++.++++- ..++| +.+..|.+..+|.+| ++...+ .
T Consensus 6 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~---~~~~~~~~~~~l~~~~vdgiI-~~~~~~--~ 72 (280)
T 3gyb_A 6 QLIAVLIDD-YSNPWFIDLIQSLSDVLTPK-G-----YRLSVIDSL---TSQAGTDPITSALSMRPDGII-IAQDIP--D 72 (280)
T ss_dssp CEEEEEESC-TTSGGGHHHHHHHHHHHGGG-T-----CEEEEECSS---SSCSSSCHHHHHHTTCCSEEE-EESCC----
T ss_pred CEEEEEeCC-CCChHHHHHHHHHHHHHHHC-C-----CEEEEEeCC---CchHHHHHHHHHHhCCCCEEE-ecCCCC--h
Confidence 579988865 34456777777776643322 2 234444433 22333 234444446899999 776544 2
Q ss_pred HHHHHHHHHhCCCeEeeCCCC-ccCCCCcchhh-hccchhhhhcccC-CCCCCEEEEEeCCCCC
Q 016960 297 SHLQEIAEDRGIPSYWIDSEK-RIGPGNKIAYK-LMHGELVEKENWL-PKGQITIGITSGASTP 357 (380)
Q Consensus 297 ~kL~eia~~~~~~t~~Ie~~~-dL~~~~~~~~~-~~~~~~~~~~~wl-~~~~~~VGITAGASTP 357 (380)
..+.+ .+.|...+.+.. +-+...-+... ...+.. ..++| ..|.++|++-.|....
T Consensus 73 ~~~~~----~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~--a~~~L~~~G~~~i~~i~~~~~~ 130 (280)
T 3gyb_A 73 FTVPD----SLPPFVIAGTRITQASTHDSVANDDFRGAEI--ATKHLIDLGHTHIAHLRVGSGA 130 (280)
T ss_dssp ----------CCCEEEESCCCSSSCSTTEEEECHHHHHHH--HHHHHHHTTCCSEEEECCSSHH
T ss_pred hhHhh----cCCCEEEECCCCCCCCCCCEEEechHHHHHH--HHHHHHHCCCCeEEEEeCCCch
Confidence 23222 788999998765 22221111110 011111 11222 1478999999886543
No 164
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}
Probab=28.79 E-value=2.7e+02 Score=25.78 Aligned_cols=106 Identities=10% Similarity=0.065 Sum_probs=64.3
Q ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccc-cCCCEEEE
Q 016960 24 NVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVV-NKGDVVVL 102 (380)
Q Consensus 24 ~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Iy~lG~LIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~el-~~g~~VII 102 (380)
.|+|-+. ..|. +|- .+|...++. +-+|+.+. .|+...+.|.+.|+.+..+ +.++ ..-| |||
T Consensus 31 ~~~I~iI-G~G~-mG~----~~a~~l~~~--G~~V~~~d---r~~~~~~~l~~~g~~~~~~------~~e~~~~aD-vVi 92 (320)
T 4dll_A 31 ARKITFL-GTGS-MGL----PMARRLCEA--GYALQVWN---RTPARAASLAALGATIHEQ------ARAAARDAD-IVV 92 (320)
T ss_dssp CSEEEEE-CCTT-THH----HHHHHHHHT--TCEEEEEC---SCHHHHHHHHTTTCEEESS------HHHHHTTCS-EEE
T ss_pred CCEEEEE-CccH-HHH----HHHHHHHhC--CCeEEEEc---CCHHHHHHHHHCCCEeeCC------HHHHHhcCC-EEE
Confidence 4676655 2232 232 344444443 34677664 5888999999999988764 3333 3445 444
Q ss_pred cCCCCCHHHHHHHH--------hcCCcEEeccCchhHHHHHHHHHHhhCCCeE
Q 016960 103 PAFGAAVEEMVTLN--------NKNVQIVDTTCPWVSKVWTSVEKHKKGDYTS 147 (380)
Q Consensus 103 rAHGv~~~~~~~l~--------~~g~~viDaTCP~V~kv~~~v~~~~~~Gy~i 147 (380)
-+=..+..+.+.+. ..|..|||.+=-........++.+.+.|-..
T Consensus 93 ~~vp~~~~~~~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~ 145 (320)
T 4dll_A 93 SMLENGAVVQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAH 145 (320)
T ss_dssp ECCSSHHHHHHHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEE
T ss_pred EECCCHHHHHHHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEE
Confidence 44444444444442 4688899988766666777777777777553
No 165
>2j13_A Polysaccharide deacetylase; family 4, peptidoglycan, hydrolase, bacterial cell WALL, carbohydrate esterase; 1.7A {Bacillus anthracis} SCOP: c.6.2.3
Probab=28.74 E-value=2.3e+02 Score=25.64 Aligned_cols=44 Identities=14% Similarity=0.041 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhhC-CCC--ceEEecccccCHHHHHHHHHcCcEEec
Q 016960 40 ERAVQIAYEARKQF-PEE--KIWITNEIIHNPTVNKRLEEMAVQNIP 83 (380)
Q Consensus 40 ~RAI~~a~~~~~~~-~~~--~Iy~lG~LIHN~~Vv~~L~~~Gv~~v~ 83 (380)
++=|+.+.+++++. +.. +.|..----.|+.+.+.|++.|..++.
T Consensus 129 ~~ei~~~~~~l~~~~G~~~~~~fr~P~G~~~~~~~~~l~~~G~~~v~ 175 (247)
T 2j13_A 129 REELTSVTEEIKKVTGQKEVKYVRPPRGVFSERTLALTKEMGYYNVF 175 (247)
T ss_dssp HHHHHHHHHHHHHHHCCSCCCEECCGGGEECHHHHHHHHHTTCEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEeCCCCCCCHHHHHHHHHCCCEEEe
Confidence 34444455555441 112 245444445799999999999999774
No 166
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=28.56 E-value=34 Score=33.76 Aligned_cols=32 Identities=22% Similarity=0.158 Sum_probs=27.3
Q ss_pred CCEEEEEccCCCchhHHHHHHHHHhCCCeEee
Q 016960 282 VDLILVVGGWNSSNTSHLQEIAEDRGIPSYWI 313 (380)
Q Consensus 282 vD~miVVGG~nSSNT~kL~eia~~~~~~t~~I 313 (380)
-.++.|||+..|+.|..+..++...+.|..--
T Consensus 116 ~~v~aiiG~~~S~~s~ava~~~~~~~iP~Is~ 147 (481)
T 3mq4_A 116 EKVVGVIGASGSSVSIMVANILRLFQIPQISY 147 (481)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHTTTTCCEEES
T ss_pred CCcEEEEcCCCcHHHHHHHHHHHhCCCCEEcc
Confidence 45889999999999999999999888875433
No 167
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=28.54 E-value=89 Score=25.21 Aligned_cols=73 Identities=14% Similarity=0.181 Sum_probs=48.9
Q ss_pred CCEEEEcCCCCCHHHHHHHHhcCCcE--EeccCchhHHHHHHHHHHhhCCCeEEEEecCCCceeeeecccC-CcEEEEcC
Q 016960 97 GDVVVLPAFGAAVEEMVTLNNKNVQI--VDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA-GKYIIVKN 173 (380)
Q Consensus 97 g~~VIIrAHGv~~~~~~~l~~~g~~v--iDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~gi~g~~-~~~~vv~~ 173 (380)
+.++|+-+=-+...+.+.|++.|..| ||.. ...++++.+.|+. +++|+...+++.--.+.. .+.+|+..
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~-------~~~~~~~~~~g~~-~i~gd~~~~~~l~~a~i~~ad~vi~~~ 79 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETS-------RTRVDELRERGVR-AVLGNAANEEIMQLAHLECAKWLILTI 79 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEESC-------HHHHHHHHHTTCE-EEESCTTSHHHHHHTTGGGCSEEEECC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECC-------HHHHHHHHHcCCC-EEECCCCCHHHHHhcCcccCCEEEEEC
Confidence 55778876556788999999998776 6764 3345556667887 488999999875433322 24566554
Q ss_pred hhhH
Q 016960 174 MKEA 177 (380)
Q Consensus 174 ~~e~ 177 (380)
.++.
T Consensus 80 ~~~~ 83 (140)
T 3fwz_A 80 PNGY 83 (140)
T ss_dssp SCHH
T ss_pred CChH
Confidence 4443
No 168
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=28.27 E-value=34 Score=35.62 Aligned_cols=109 Identities=6% Similarity=-0.008 Sum_probs=62.6
Q ss_pred cccccccccHHHHHhHHHHHHhhhhcCCEEEEEccCCCchhHHHHHHHHHhCCCeEeeCCCCccCCCCcchhhh--ccch
Q 016960 256 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL--MHGE 333 (380)
Q Consensus 256 ~~~~~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGG~nSSNT~kL~eia~~~~~~t~~Ie~~~dL~~~~~~~~~~--~~~~ 333 (380)
++.+.|+-|.....-..++.+|.. + ++..|||+..|+.+.....++...+.|-+--.. ..... ....|+. .++.
T Consensus 35 ~~~~~D~~~~~~~~a~~~~~~l~~-~-~V~aiiG~~~S~~~~a~~~i~~~~~iP~is~~~-~~~~~-~~~~~r~~p~~~~ 110 (823)
T 3kg2_A 35 TPHIDNLEVANSFAVTNAFCSQFS-R-GVYAIFGFYDKKSVNTITSFCGTLHVSFITPSF-PTDGT-HPFVIQMRPDLKG 110 (823)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHH-T-TCSEEEECCCTTTHHHHHHHHHHTTCEEEECSC-CCSSC-CSSEEECSCCCHH
T ss_pred EEEEEEcCCCChHHHHHHHHHHHh-c-CcEEEEcCCChhHHHHHHHHhhcCCCceeeccc-CCCCC-CceEEEeCCCHHH
Confidence 455778888433444456666653 2 677889999999999999999998877543211 11211 1222222 1111
Q ss_pred h-hhhcccCCCCCCEEEEEeCCCCCHHHHHHHHHHHHh
Q 016960 334 L-VEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFE 370 (380)
Q Consensus 334 ~-~~~~~wl~~~~~~VGITAGASTP~~lI~eV~~~l~~ 370 (380)
. ...-..| +.++|+|-.-..--....+.+.+.+.+
T Consensus 111 a~~~l~~~~--gw~~v~ii~d~~~g~~~~~~~~~~~~~ 146 (823)
T 3kg2_A 111 ALLSLIEYY--QWDKFAYLYDSDRGLSTLQAVLDSAAE 146 (823)
T ss_dssp HHHHHHHHT--TCSEEEEEECGGGCTHHHHHHHHHHHH
T ss_pred HHHHHHHHC--CCCEEEEEEeCChhHHHHHHHHHHhhc
Confidence 1 1111223 678999988433345566666666654
No 169
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=28.00 E-value=75 Score=25.96 Aligned_cols=46 Identities=11% Similarity=0.115 Sum_probs=33.9
Q ss_pred HHHhhhhcCCEEEEEccCCCchhH-HHHHHHHHhCCCeEee-CCCCccC
Q 016960 274 MYKMVEEKVDLILVVGGWNSSNTS-HLQEIAEDRGIPSYWI-DSEKRIG 320 (380)
Q Consensus 274 ~~eLa~~~vD~miVVGG~nSSNT~-kL~eia~~~~~~t~~I-e~~~dL~ 320 (380)
++.|-++++-++|+-.+-. .|++ ++-..|...+.|.+++ .|-.||-
T Consensus 35 ~kai~~gkakLVilA~D~~-~~~~~~i~~~c~~~~ipv~~~~~s~~eLG 82 (112)
T 3iz5_f 35 LKTLRSSLGKLIILANNCP-PLRKSEIETYAMLAKISVHHFHGNNVDLG 82 (112)
T ss_dssp HHHHHTTCCSEEEECSCCC-HHHHHHHHHHHHHTTCCEECCCCTTCTHH
T ss_pred HHHHHcCCceEEEEeCCCC-HHHHHHHHHHHHHcCCcEEEeCCCHHHHH
Confidence 3344446787777777664 5665 6667899999999999 8888885
No 170
>2i5i_A UPF0249 protein EF_3048; putative cellobiose-phosphate cleavage protein, structural G joint center for structural genomics, JCSG; HET: MSE; 1.70A {Enterococcus faecalis} SCOP: c.6.2.8
Probab=27.86 E-value=29 Score=32.35 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=30.1
Q ss_pred ceE-EEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccC---HHHHHHHH
Q 016960 24 NVK-VKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHN---PTVNKRLE 75 (380)
Q Consensus 24 ~mk-I~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Iy~lG~LIHN---~~Vv~~L~ 75 (380)
+|+ |+-|.-+|+|.||.+||..+.+. +.|-..+=|+=- ++-++.++
T Consensus 4 ~~~LIvnADDfGls~~vN~gI~~~~~~------G~ltstslMvn~p~~~~A~~~~k 53 (263)
T 2i5i_A 4 NKKLIINADDFGYTPAVTQGIIEAHKR------GVVTSTTALPTSPYFLEAMESAR 53 (263)
T ss_dssp CCEEEEEEEEETSSHHHHHHHHHHHHS------SSCCEEEECTTSTTHHHHHHHHH
T ss_pred ccEEEEEcccCCCChhHHHHHHHHHHC------CcceEeeeccCCcHHHHHHHHHH
Confidence 566 56699999999999999877542 234444444433 34555555
No 171
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=27.76 E-value=97 Score=29.00 Aligned_cols=25 Identities=4% Similarity=0.121 Sum_probs=21.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhh
Q 016960 347 TIGITSGASTPDKAVEDVLKKVFEI 371 (380)
Q Consensus 347 ~VGITAGASTP~~lI~eV~~~l~~~ 371 (380)
..|+.+-+.||+.++.++.+.|.+-
T Consensus 261 ~~~l~ap~~~p~~vv~~l~~a~~e~ 285 (327)
T 4ddd_A 261 KASLVTTTELSNDLAYKIVKSIATH 285 (327)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHHHT
T ss_pred eeEEEEcCCCCHHHHHHHHHHHHhC
Confidence 4578899999999999999998753
No 172
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=27.56 E-value=91 Score=26.39 Aligned_cols=41 Identities=12% Similarity=0.109 Sum_probs=33.5
Q ss_pred hhhhcCCEEEEEcc-CCCchhHHHHHHHHHhCCCeEeeCCCCc
Q 016960 277 MVEEKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEKR 318 (380)
Q Consensus 277 La~~~vD~miVVGG-~nSSNT~kL~eia~~~~~~t~~Ie~~~d 318 (380)
+. ++-|++|++.- -+|.++..+++.|++.|.+++.|.+..+
T Consensus 113 ~~-~~~d~vI~iS~SG~t~~~~~~~~~ak~~g~~vI~IT~~~~ 154 (198)
T 2xbl_A 113 LG-NEGDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRG 154 (198)
T ss_dssp HC-CTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECSCC
T ss_pred hC-CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 44 47899988864 6778899999999999999999987644
No 173
>3imk_A Putative molybdenum carrier protein; YP_461806.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE MES PG4 PG6; 1.45A {Syntrophus aciditrophicus SB}
Probab=27.43 E-value=59 Score=28.72 Aligned_cols=82 Identities=16% Similarity=0.182 Sum_probs=56.0
Q ss_pred cCCEEEEEc-cCCCchhHHHHHHHHHhCCCeEeeCCCCccCCCCcchhhhccchhhhhcccCCCCCCEEEEEeCC--CCC
Q 016960 281 KVDLILVVG-GWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGA--STP 357 (380)
Q Consensus 281 ~vD~miVVG-G~nSSNT~kL~eia~~~~~~t~~Ie~~~dL~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGITAGA--STP 357 (380)
.+|..+++. |.-|.=|.-=++.|+++++|-++|+= +++.... ......+|+....-.|-=.||- |.-
T Consensus 73 DSDgTLI~~~g~lsGGT~lT~~~a~~~~KP~l~i~l-~~~~~~~---------~~~~v~~wl~~~~i~vLNVAGPReS~~ 142 (158)
T 3imk_A 73 DSDGTLIISHGILKGGSALTEFFAEQYKKPCLHIDL-DRISIED---------AATLINSWTVSHHIQVLNIAGPRAGKD 142 (158)
T ss_dssp TSSEEEEEESSSCCHHHHHHHHHHHHTTCCEEEEET-TTSCHHH---------HHHHHHHHHHHTTCCEEEEECCCTTTC
T ss_pred hcCeEEEEecCCCCCchHHHHHHHHHhCCCEEEEec-ccccccc---------hHHHHHHHHHHCCceEEEeccCcccCC
Confidence 699999999 99999999999999999999888863 3322100 0112237885455566667884 555
Q ss_pred HHHHHHHHHHHHhhh
Q 016960 358 DKAVEDVLKKVFEIK 372 (380)
Q Consensus 358 ~~lI~eV~~~l~~~~ 372 (380)
..|-.++...|..++
T Consensus 143 PgI~~~~~~~L~~~l 157 (158)
T 3imk_A 143 PEIYQATMDLLEVFL 157 (158)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 566666666665543
No 174
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=27.41 E-value=2.7e+02 Score=23.13 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=21.6
Q ss_pred ccCCCE-EEEcCCCCCHHHHHHH---HhcCCcEEeccC
Q 016960 94 VNKGDV-VVLPAFGAAVEEMVTL---NNKNVQIVDTTC 127 (380)
Q Consensus 94 l~~g~~-VIIrAHGv~~~~~~~l---~~~g~~viDaTC 127 (380)
+.++|. ++|+.-|-++++.+.+ +++|..+|=-|+
T Consensus 108 ~~~~Dvvi~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~ 145 (188)
T 1tk9_A 108 GNEKDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSG 145 (188)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 456776 4688889999977655 444444443333
No 175
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=27.37 E-value=2.4e+02 Score=24.70 Aligned_cols=97 Identities=11% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHHHHH-HHhhCCCCceEEec---ccccCHHHHHHHHHcCcEEecCCcccc---ccccccCCCEE-EEcCCCCCHH
Q 016960 39 VERAVQIAYE-ARKQFPEEKIWITN---EIIHNPTVNKRLEEMAVQNIPVEEGKK---QFDVVNKGDVV-VLPAFGAAVE 110 (380)
Q Consensus 39 V~RAI~~a~~-~~~~~~~~~Iy~lG---~LIHN~~Vv~~L~~~Gv~~v~~~~~~~---~~~el~~g~~V-IIrAHGv~~~ 110 (380)
+++++++..+ +++. .++||++| .-.=-.....+|...|..+.--.+... .+..+.++|.| +|+.-|-+++
T Consensus 44 i~~~~~~i~~~a~~~--a~~I~i~G~G~S~~~A~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~DlvI~iS~SG~t~~ 121 (220)
T 3etn_A 44 YEKAVELIVEQIHRK--KGKLVTSGMGKAGQIAMNIATTFCSTGIPSVFLHPSEAQHGDLGILQENDLLLLISNSGKTRE 121 (220)
T ss_dssp HHHHHHHHHHHTTTT--CCCEEEECSHHHHHHHHHHHHHHHHTTCCEEECCTTGGGBTGGGGCCTTCEEEEECSSSCCHH
T ss_pred HHHHHHHHHhHhhcc--CCEEEEEEecHHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhhhccCCCCCEEEEEcCCCCCHH
Q ss_pred ---HHHHHHh--cCCcEEeccCchhHHHHHHH
Q 016960 111 ---EMVTLNN--KNVQIVDTTCPWVSKVWTSV 137 (380)
Q Consensus 111 ---~~~~l~~--~g~~viDaTCP~V~kv~~~v 137 (380)
..+.+++ +|..+|=-|+..-..+.+.+
T Consensus 122 ~i~~~~~ak~~~~Ga~vI~IT~~~~s~La~~a 153 (220)
T 3etn_A 122 IVELTQLAHNLNPGLKFIVITGNPDSPLASES 153 (220)
T ss_dssp HHHHHHHHHHHCTTCEEEEEESCTTSHHHHHS
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCChhHHhC
No 176
>2cc0_A Acetyl-xylan esterase; hydrolase, carbohydrate esterase; 1.6A {Streptomyces lividans} SCOP: c.6.2.3
Probab=27.33 E-value=2.9e+02 Score=23.57 Aligned_cols=102 Identities=10% Similarity=-0.001 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHhhCCCC--ceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCC-HHHHHHH
Q 016960 39 VERAVQIAYEARKQFPEE--KIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAA-VEEMVTL 115 (380)
Q Consensus 39 V~RAI~~a~~~~~~~~~~--~Iy~lG~LIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~el~~g~~VIIrAHGv~-~~~~~~l 115 (380)
+++=|+.+.+++++..+. +.|..----.|+.+.+.|++.|..++.-. ++ ..|.- +.+ .++.+.+
T Consensus 77 ~~~ei~~~~~~l~~~~G~~~~~fr~P~G~~~~~~~~~~~~~G~~~v~w~-----~d---~~Dw~-----~~~~~~i~~~~ 143 (195)
T 2cc0_A 77 MDSEISRTQQAIAGAGGGTPKLFRPPYGETNATLRSVEAKYGLTEVIWD-----VD---SQDWN-----NASTDAIVQAV 143 (195)
T ss_dssp HHHHHHHHHHHHHHTTSCCCSEECCGGGCCCHHHHHHHHHTTCEECCCS-----EE---CCGGG-----TCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEECCCCCcCHHHHHHHHHCCCeEEEec-----cC---CCccC-----CCCHHHHHHHH
Confidence 455566666666653222 45664445679999999999999987521 00 01100 001 1122222
Q ss_pred Hh--cCCcE--EeccCchhHHHHHHHHHHhhCCCeEEEEecC
Q 016960 116 NN--KNVQI--VDTTCPWVSKVWTSVEKHKKGDYTSIIHGKY 153 (380)
Q Consensus 116 ~~--~g~~v--iDaTCP~V~kv~~~v~~~~~~Gy~iIIiG~~ 153 (380)
++ .|-.| -|..-.-+..+-.++..+.++||+.+-+.+.
T Consensus 144 ~~~~~g~IiL~Hd~~~~t~~al~~ii~~l~~~Gy~~v~l~~~ 185 (195)
T 2cc0_A 144 SRLGNGQVILMHDWPANTLAAIPRIAQTLAGKGLCSGMISPQ 185 (195)
T ss_dssp HTCCTTCEEEEESSCHHHHHHHHHHHHHHHHTTEEECEECTT
T ss_pred hCcCcCeEEEECCCchhHHHHHHHHHHHHHHCCCEEEEeCcc
Confidence 11 12111 1221123566777888999999998877654
No 177
>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}
Probab=27.08 E-value=1.7e+02 Score=25.59 Aligned_cols=68 Identities=7% Similarity=-0.087 Sum_probs=51.1
Q ss_pred HHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCc-EEeccCchhHHHHHHHHHHhhCCCeEE
Q 016960 70 VNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQ-IVDTTCPWVSKVWTSVEKHKKGDYTSI 148 (380)
Q Consensus 70 Vv~~L~~~Gv~~v~~~~~~~~~~el~~g~~VIIrAHGv~~~~~~~l~~~g~~-viDaTCP~V~kv~~~v~~~~~~Gy~iI 148 (380)
.++.|+++|+.+.= + +++ -...+...+++.|+. +++...|...-+....+++.-....++
T Consensus 84 ~L~~L~~~G~~l~I----------~-T~~--------~~~~~~~~l~~lgi~~~f~~~k~K~~~l~~~~~~lg~~~~~~~ 144 (211)
T 3ij5_A 84 GIRCLITSDIDVAI----------I-TGR--------RAKLLEDRANTLGITHLYQGQSDKLVAYHELLATLQCQPEQVA 144 (211)
T ss_dssp HHHHHHHTTCEEEE----------E-CSS--------CCHHHHHHHHHHTCCEEECSCSSHHHHHHHHHHHHTCCGGGEE
T ss_pred HHHHHHHCCCEEEE----------E-eCC--------CHHHHHHHHHHcCCchhhcccCChHHHHHHHHHHcCcCcceEE
Confidence 78899999987541 1 121 345667778888885 688888888888888888877788999
Q ss_pred EEecCCCc
Q 016960 149 IHGKYSHE 156 (380)
Q Consensus 149 IiG~~~Hp 156 (380)
.+||..+-
T Consensus 145 ~vGDs~nD 152 (211)
T 3ij5_A 145 YIGDDLID 152 (211)
T ss_dssp EEECSGGG
T ss_pred EEcCCHHH
Confidence 99998653
No 178
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=26.81 E-value=1.5e+02 Score=28.33 Aligned_cols=94 Identities=10% Similarity=0.081 Sum_probs=58.2
Q ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCcccccccccc------CC
Q 016960 24 NVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVN------KG 97 (380)
Q Consensus 24 ~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Iy~lG~LIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~el~------~g 97 (380)
.+-.+...|.-||.|+..||+.+.+. .+..+|-+ -++|........+.|+..|.=++- +.+++. .+
T Consensus 170 d~vlikdNHi~~~G~i~~Av~~ar~~---~~~~~IeV---Ev~tl~ea~eAl~aGaD~I~LDn~--~~~~l~~av~~~~~ 241 (287)
T 3tqv_A 170 DAYLIKENHIRSAGGIAKAVTKAKKL---DSNKVVEV---EVTNLDELNQAIAAKADIVMLDNF--SGEDIDIAVSIARG 241 (287)
T ss_dssp SSEEECTTTC----CHHHHHHHHHHH---CTTSCEEE---EESSHHHHHHHHHTTCSEEEEESC--CHHHHHHHHHHHTT
T ss_pred cEEEEeHHHHHHhCCHHHHHHHHHhh---CCCCcEEE---EeCCHHHHHHHHHcCCCEEEEcCC--CHHHHHHHHHhhcC
Confidence 35455578888999999999988654 23456766 578876666656678777651110 111111 24
Q ss_pred CEEEEcCCCCCHHHHHHHHhcCCcEEec
Q 016960 98 DVVVLPAFGAAVEEMVTLNNKNVQIVDT 125 (380)
Q Consensus 98 ~~VIIrAHGv~~~~~~~l~~~g~~viDa 125 (380)
...|.-|=|++++....+.+-|+.+|-.
T Consensus 242 ~v~ieaSGGIt~~~i~~~a~tGVD~Isv 269 (287)
T 3tqv_A 242 KVALEVSGNIDRNSIVAIAKTGVDFISV 269 (287)
T ss_dssp TCEEEEESSCCTTTHHHHHTTTCSEEEC
T ss_pred CceEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 5567777888888888888888877754
No 179
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=26.53 E-value=1e+02 Score=29.72 Aligned_cols=52 Identities=21% Similarity=0.314 Sum_probs=34.8
Q ss_pred ccccHHHHHhHHHHHHhh-hhcCCEEEEEccCCCchhHHHHHHHHHhCCCeEeeCC
Q 016960 261 NTICDATQERQDAMYKMV-EEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDS 315 (380)
Q Consensus 261 nTIC~AT~~RQ~a~~eLa-~~~vD~miVVGG~nSSNT~kL~eia~~~~~~t~~Ie~ 315 (380)
.|....|..-...+.++. ..+-|+++|.|+++|.-. +-.|+..+.|.+|++.
T Consensus 73 ~~~~~~~~~~~~~l~~~l~~~kPD~Vlv~gd~~~~~a---alaA~~~~IPv~h~ea 125 (385)
T 4hwg_A 73 DNTAKSIGLVIEKVDEVLEKEKPDAVLFYGDTNSCLS---AIAAKRRKIPIFHMEA 125 (385)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHCCSEEEEESCSGGGGG---HHHHHHTTCCEEEESC
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCcEEEEECCchHHHH---HHHHHHhCCCEEEEeC
Confidence 355555555544444433 346899999999888765 3356778888988885
No 180
>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A
Probab=26.41 E-value=2.2e+02 Score=23.94 Aligned_cols=67 Identities=9% Similarity=-0.059 Sum_probs=47.4
Q ss_pred HHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCc-EEeccCchhHHHHHHHHHHhhCCCeEE
Q 016960 70 VNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQ-IVDTTCPWVSKVWTSVEKHKKGDYTSI 148 (380)
Q Consensus 70 Vv~~L~~~Gv~~v~~~~~~~~~~el~~g~~VIIrAHGv~~~~~~~l~~~g~~-viDaTCP~V~kv~~~v~~~~~~Gy~iI 148 (380)
.++.|+++|+.+.= + +| +-...+...++..|+. +.|...|.-.-++...+++.-+...++
T Consensus 54 ~l~~L~~~g~~~~i----------~-T~--------~~~~~~~~~~~~lgl~~~f~~~~~K~~~~~~~~~~~g~~~~~~~ 114 (189)
T 3mn1_A 54 GIKMLIASGVTTAI----------I-SG--------RKTAIVERRAKSLGIEHLFQGREDKLVVLDKLLAELQLGYEQVA 114 (189)
T ss_dssp HHHHHHHTTCEEEE----------E-CS--------SCCHHHHHHHHHHTCSEEECSCSCHHHHHHHHHHHHTCCGGGEE
T ss_pred HHHHHHHCCCEEEE----------E-EC--------cChHHHHHHHHHcCCHHHhcCcCChHHHHHHHHHHcCCChhHEE
Confidence 88899999986541 1 12 2345677788888885 677766666667777777766678899
Q ss_pred EEecCCC
Q 016960 149 IHGKYSH 155 (380)
Q Consensus 149 IiG~~~H 155 (380)
.+||..+
T Consensus 115 ~vGD~~n 121 (189)
T 3mn1_A 115 YLGDDLP 121 (189)
T ss_dssp EEECSGG
T ss_pred EECCCHH
Confidence 9999864
No 181
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A*
Probab=26.24 E-value=49 Score=34.55 Aligned_cols=42 Identities=21% Similarity=0.410 Sum_probs=31.5
Q ss_pred HHhHHHHHHhhhhcCCEEEEEccCCCch-hHHHHHHHHHhCCC
Q 016960 268 QERQDAMYKMVEEKVDLILVVGGWNSSN-TSHLQEIAEDRGIP 309 (380)
Q Consensus 268 ~~RQ~a~~eLa~~~vD~miVVGG~nSSN-T~kL~eia~~~~~~ 309 (380)
..|++++..|-.-.+|.++||||-.|-. ..+|.+.+++.+..
T Consensus 153 e~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~~~~ 195 (555)
T 2f48_A 153 EHYNKALFVAKENNLNAIIIIGGDDSNTNAAILAEYFKKNGEN 195 (555)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcHHHHHHHHHHHHHHhCCC
Confidence 3567777777556799999999999844 55788888776643
No 182
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=26.04 E-value=74 Score=30.64 Aligned_cols=48 Identities=17% Similarity=0.314 Sum_probs=32.6
Q ss_pred HhHHHHHHhhhhcCCEEEEEccCCCchhHHHHHHHHHhCCCeEeeCCCCccCC
Q 016960 269 ERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGP 321 (380)
Q Consensus 269 ~RQ~a~~eLa~~~vD~miVVGG~nSSNT~kL~eia~~~~~~t~~Ie~~~dL~~ 321 (380)
.+++++..|-+..+|.+++|||-.|-.|-.. ++ +.+.+...| +.=||.
T Consensus 81 ~~~~~~~~l~~~~Id~L~~IGGdgS~~~a~~--l~-~~~i~vigi--PkTIDN 128 (319)
T 4a3s_A 81 GREKGIANLKKLGIEGLVVIGGDGSYMGAKK--LT-EHGFPCVGV--PGTIDN 128 (319)
T ss_dssp HHHHHHHHHHHHTCCEEEEEECTTHHHHHHH--HH-HTTCCEEEE--EEETTC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcHHHHHHHH--Hh-ccCCcEEEe--eccccC
Confidence 4566666676568999999999988766543 33 577777655 344443
No 183
>1z2w_A Vacuolar protein sorting 29; VPS29, retromer, phosphatase, manganese, protein transport; 2.00A {Mus musculus} SCOP: d.159.1.7 PDB: 1z2x_A 3lh6_A 3lh7_A 3psn_A 3pso_A 1w24_A 2r17_A
Probab=25.92 E-value=80 Score=26.96 Aligned_cols=83 Identities=14% Similarity=0.066 Sum_probs=46.8
Q ss_pred CceEEecccccCHHHHHHHHHcC--cEEecCCccccccccccC------CCEEEEcCCCCCHHHHHHHHhcCCcEEeccC
Q 016960 56 EKIWITNEIIHNPTVNKRLEEMA--VQNIPVEEGKKQFDVVNK------GDVVVLPAFGAAVEEMVTLNNKNVQIVDTTC 127 (380)
Q Consensus 56 ~~Iy~lG~LIHN~~Vv~~L~~~G--v~~v~~~~~~~~~~el~~------g~~VIIrAHGv~~~~~~~l~~~g~~viDaTC 127 (380)
..|+.+|+|++ +.+.+.|++.+ +.+|...-.. ...+|. +..-|+=.||-+.... .
T Consensus 42 d~ii~~GDl~~-~~~~~~l~~~~~~~~~v~GNhD~--~~~lp~~~~~~~~~~~i~l~Hg~~~~~~------------~-- 104 (192)
T 1z2w_A 42 QHILCTGNLCT-KESYDYLKTLAGDVHIVRGDFDE--NLNYPEQKVVTVGQFKIGLIHGHQVIPW------------G-- 104 (192)
T ss_dssp SEEEECSCCBS-HHHHHHHHHHCSEEEECCCTTCC--CTTSCSEEEEEETTEEEEEECSCCCCBT------------T--
T ss_pred CEEEEcCCCCC-HHHHHHHHhcCCCEEEEcCCcCc--cccCCcceEEEECCEEEEEECCCcCCCC------------C--
Confidence 46999999996 78899999988 4555532110 012221 3333444687551100 0
Q ss_pred chhHHHHHHHHHHhhCCCeEEEEecCCCceee
Q 016960 128 PWVSKVWTSVEKHKKGDYTSIIHGKYSHEETV 159 (380)
Q Consensus 128 P~V~kv~~~v~~~~~~Gy~iIIiG~~~HpEv~ 159 (380)
--..+...+ .+.+..+++.|+-..|.+.
T Consensus 105 -~~~~l~~~~---~~~~~d~vi~GHtH~~~~~ 132 (192)
T 1z2w_A 105 -DMASLALLQ---RQFDVDILISGHTHKFEAF 132 (192)
T ss_dssp -CHHHHHHHH---HHHSSSEEECCSSCCCEEE
T ss_pred -CHHHHHHHH---HhcCCCEEEECCcCcCccE
Confidence 012222222 2357899999987777654
No 184
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}
Probab=25.89 E-value=1.5e+02 Score=26.82 Aligned_cols=92 Identities=9% Similarity=-0.022 Sum_probs=57.3
Q ss_pred HHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccc-cCCCEEEEcCCCCCHHHHHHH--------
Q 016960 45 IAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVV-NKGDVVVLPAFGAAVEEMVTL-------- 115 (380)
Q Consensus 45 ~a~~~~~~~~~~~Iy~lG~LIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~el-~~g~~VIIrAHGv~~~~~~~l-------- 115 (380)
+|...++. +-+|+.+. .|+...+.|.+.|+.+..+ +.++ ..-| |||-+=..++.+.+.+
T Consensus 16 ~a~~l~~~--G~~V~~~d---r~~~~~~~~~~~g~~~~~~------~~~~~~~ad-vvi~~v~~~~~~~~v~~~~~~l~~ 83 (287)
T 3pdu_A 16 MAANLVRA--GFDVTVWN---RNPAKCAPLVALGARQASS------PAEVCAACD-ITIAMLADPAAAREVCFGANGVLE 83 (287)
T ss_dssp HHHHHHHH--TCCEEEEC---SSGGGGHHHHHHTCEECSC------HHHHHHHCS-EEEECCSSHHHHHHHHHSTTCGGG
T ss_pred HHHHHHHC--CCeEEEEc---CCHHHHHHHHHCCCeecCC------HHHHHHcCC-EEEEEcCCHHHHHHHHcCchhhhh
Confidence 34444443 24577764 5888889999999988754 2333 3345 4455544444555544
Q ss_pred -HhcCCcEEeccCchhHHHHHHHHHHhhCCCeEE
Q 016960 116 -NNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSI 148 (380)
Q Consensus 116 -~~~g~~viDaTCP~V~kv~~~v~~~~~~Gy~iI 148 (380)
-..|..|||.+--.........+.+.+.|...+
T Consensus 84 ~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~~ 117 (287)
T 3pdu_A 84 GIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFL 117 (287)
T ss_dssp TCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred cccCCCEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence 135778899887766666777776767776543
No 185
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=25.84 E-value=2.2e+02 Score=29.03 Aligned_cols=58 Identities=21% Similarity=0.128 Sum_probs=37.2
Q ss_pred EEEEeCCCCC----cccHHHHHHHHHHHHhh--------CCCCceEEeccccc---C-HHHHHHHHHcCcEEec
Q 016960 26 KVKLAESYGF----CWGVERAVQIAYEARKQ--------FPEEKIWITNEIIH---N-PTVNKRLEEMAVQNIP 83 (380)
Q Consensus 26 kI~lA~~~GF----C~GV~RAI~~a~~~~~~--------~~~~~Iy~lG~LIH---N-~~Vv~~L~~~Gv~~v~ 83 (380)
.|..+..-|| ..|..+|++-..+.+.. .....|-++|..-. | .++..-|++.|+.++-
T Consensus 180 ~Vv~v~tpgf~Gs~~~G~~~a~~alv~~l~~~~~~~~~~~~~~~VNIig~~~~~~gD~~elkrlL~~~Gi~v~~ 253 (523)
T 3u7q_B 180 PVPFAHTPSFVGSHVTGWDNMFEGIARYFTLKSMDDKVVGSNKKINIVPGFETYLGNFRVIKRMLSEMGVGYSL 253 (523)
T ss_dssp CCCBCCCCTTSSCHHHHHHHHHHHHHHHHHGGGGGGCCTTTTCCEEEECCSCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred eEEEeeCCCCCCChhHHHHHHHHHHHHHhcccccccccCCCCCeEEEECCCCCChhHHHHHHHHHHHcCCeEEE
Confidence 4666777888 57888888765543321 11346999997522 1 3556667889998764
No 186
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=25.77 E-value=1.7e+02 Score=28.07 Aligned_cols=130 Identities=12% Similarity=0.065 Sum_probs=66.5
Q ss_pred ceeEEEEcCCCCh-HHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHhHHHHHHhhhhcCCEEEEEccCCCchh
Q 016960 218 VKVGIANQTTMLK-GETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNT 296 (380)
Q Consensus 218 ~kv~vvsQTT~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGG~nSSNT 296 (380)
.+|++|.-.+..- .-+..+.+-+++ +.+.++.. -++.+.++ .....+.++.++.|+++.+|++|..|.. -.
T Consensus 27 ~kIglv~~g~i~D~~f~~~~~~G~~~-~~~~~G~~---~~~~~~e~-~~~~~d~~~~l~~l~~~g~d~Ii~~g~~---~~ 98 (356)
T 3s99_A 27 LKVGFIYIGPPGDFGWTYQHDQARKE-LVEALGDK---VETTFLEN-VAEGADAERSIKRIARAGNKLIFTTSFG---YM 98 (356)
T ss_dssp EEEEEECSSCGGGSSHHHHHHHHHHH-HHHHHTTT---EEEEEECS-CCTTHHHHHHHHHHHHTTCSEEEECSGG---GH
T ss_pred CEEEEEEccCCCchhHHHHHHHHHHH-HHHHhCCc---eEEEEEec-CCCHHHHHHHHHHHHHCCCCEEEECCHH---HH
Confidence 4899998544432 334444444433 23333310 11222221 1223466788999987789988877533 33
Q ss_pred HHHHHHHHHh-CCCeEeeCCCCccCCCCcchhhhccchh----hhhcccCCCCCCEEEEEeCCCCCH
Q 016960 297 SHLQEIAEDR-GIPSYWIDSEKRIGPGNKIAYKLMHGEL----VEKENWLPKGQITIGITSGASTPD 358 (380)
Q Consensus 297 ~kL~eia~~~-~~~t~~Ie~~~dL~~~~~~~~~~~~~~~----~~~~~wl~~~~~~VGITAGASTP~ 358 (380)
..+.+++++. ..+-.+|.+..+.+ +...+.....|. -.-...+ ...++||..+|--.|.
T Consensus 99 ~~~~~vA~~~Pdv~fv~id~~~~~~--Nv~sv~~~~~eg~ylaG~~A~~~-tk~~kIGfVgg~~~p~ 162 (356)
T 3s99_A 99 DPTVKVAKKFPDVKFEHATGYKTAD--NMSAYNARFYEGRYVQGVIAAKM-SKKGIAGYIGSVPVPE 162 (356)
T ss_dssp HHHHHHHTTCTTSEEEEESCCCCBT--TEEEEEECHHHHHHHHHHHHHHH-CSSCEEEEEECCCCHH
T ss_pred HHHHHHHHHCCCCEEEEEeccccCC--cEEEEEechhHHHHHHHHHHHHh-cCCCEEEEECCCccHH
Confidence 5677888765 33455666543322 222222111111 0001122 3468999999976664
No 187
>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*
Probab=25.70 E-value=79 Score=30.24 Aligned_cols=58 Identities=9% Similarity=0.086 Sum_probs=40.0
Q ss_pred CCEEEEcCCCCCHHHHHHHHhcCCcEEec-cCc------hhHHHHHHHHHHhh-CCCeEEEEecCCC
Q 016960 97 GDVVVLPAFGAAVEEMVTLNNKNVQIVDT-TCP------WVSKVWTSVEKHKK-GDYTSIIHGKYSH 155 (380)
Q Consensus 97 g~~VIIrAHGv~~~~~~~l~~~g~~viDa-TCP------~V~kv~~~v~~~~~-~Gy~iIIiG~~~H 155 (380)
.|.+++|.++ .....+.++-.++.||.| -|. --.-+..+-+.+.. +|.+|.++||-.|
T Consensus 95 ~D~iviR~~~-~~~~~~la~~~~vPVINaG~g~~~HPtQ~LaDl~Ti~e~~g~l~gl~va~vGD~~~ 160 (299)
T 1pg5_A 95 SDGIVMRHKY-DGASRFASEISDIPVINAGDGKHEHPTQAVIDIYTINKHFNTIDGLVFALLGDLKY 160 (299)
T ss_dssp CSEEEEEESS-BTHHHHHHHHCSSCEEEEEETTTBCHHHHHHHHHHHHHHHSCSTTCEEEEEECCSS
T ss_pred CCEEEEeCCC-hhHHHHHHHhCCCCEEeCCCCCCcCcHHHHHHHHHHHHHhCCcCCcEEEEECCCCC
Confidence 4789999544 334555666778999999 544 34444444455544 8999999999877
No 188
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=25.48 E-value=26 Score=30.30 Aligned_cols=71 Identities=11% Similarity=0.129 Sum_probs=0.0
Q ss_pred EEEEEccCC----CchhHHHHHHHHHhCCCeEeeCCCCccCCC--CcchhhhccchhhhhcccCCC--CCCEEEEEeCCC
Q 016960 284 LILVVGGWN----SSNTSHLQEIAEDRGIPSYWIDSEKRIGPG--NKIAYKLMHGELVEKENWLPK--GQITIGITSGAS 355 (380)
Q Consensus 284 ~miVVGG~n----SSNT~kL~eia~~~~~~t~~Ie~~~dL~~~--~~~~~~~~~~~~~~~~~wl~~--~~~~VGITAGAS 355 (380)
.+|.+|..- .+|+.-|.+..++.|........+.|=... +.+. .|+ + ++..| ||+|++
T Consensus 17 ~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~------------~~~-~~~~~DlV-ittGG~ 82 (169)
T 1y5e_A 17 KIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVL------------AGY-HKEDVDVV-LTNGGT 82 (169)
T ss_dssp EEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHH------------HHH-TCTTCSEE-EEECCC
T ss_pred EEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHH------------HHH-hcCCCCEE-EEcCCC
Q ss_pred --CCHHHHHHHHHHH
Q 016960 356 --TPDKAVEDVLKKV 368 (380)
Q Consensus 356 --TP~~lI~eV~~~l 368 (380)
||+.++.+++..+
T Consensus 83 g~g~~D~t~ea~~~~ 97 (169)
T 1y5e_A 83 GITKRDVTIEAVSAL 97 (169)
T ss_dssp SSSTTCCHHHHHHTT
T ss_pred CCCCCCCcHHHHHHH
No 189
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Probab=25.33 E-value=85 Score=30.42 Aligned_cols=58 Identities=10% Similarity=0.117 Sum_probs=36.6
Q ss_pred ccccccccccHHHHHhHHHHHHhhhhcCCEEEEEccCCC-chhHHHHHHHHHhCCCeEeeCC
Q 016960 255 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNS-SNTSHLQEIAEDRGIPSYWIDS 315 (380)
Q Consensus 255 ~~~~~~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGG~nS-SNT~kL~eia~~~~~~t~~Ie~ 315 (380)
+++..|+.-=.. .+-+.+.+.+ .++|++||||..-. .-...|...+...|.+.+.|.-
T Consensus 183 PdVV~FGE~lP~--~~~~~a~~~~-~~aDllLViGTSL~V~Paa~l~~~a~~~G~~vviIN~ 241 (318)
T 3k35_A 183 DTILDWEDSLPD--RDLALADEAS-RNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNL 241 (318)
T ss_dssp ECCCCTTCCCCH--HHHHHHHHHH-HTCSEEEEESCCCCSTTGGGHHHHHHHTTCEEEEECS
T ss_pred CCEEEccCcCCH--HHHHHHHHHH-hcCCEEEEEccCCCchhhhhhHHHHHhcCCEEEEECC
Confidence 455556554222 1223344455 48999999998432 2235788888889988888864
No 190
>2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Agrobacterium tumefaciens str}
Probab=24.83 E-value=91 Score=29.30 Aligned_cols=72 Identities=8% Similarity=0.032 Sum_probs=40.2
Q ss_pred HHHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcE------EeccCchhHHH---HHHHHH
Q 016960 69 TVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQI------VDTTCPWVSKV---WTSVEK 139 (380)
Q Consensus 69 ~Vv~~L~~~Gv~~v~~~~~~~~~~el~~g~~VIIrAHGv~~~~~~~l~~~g~~v------iDaTCP~V~kv---~~~v~~ 139 (380)
.|++.|+++|+-|+++-+ .+.. ...+.+++.|+.. +|.. +-...| .+++..
T Consensus 146 ~vm~~L~~~gL~FlDS~T---------s~~S----------~a~~~A~~~gvp~~~rdvFLD~~-~~~~~I~~qL~~a~~ 205 (261)
T 2qv5_A 146 PVMRDIGKRGLLFLDDGS---------SAQS----------LSGGIAKAISAPQGFADVLLDGE-VTEASILRKLDDLER 205 (261)
T ss_dssp HHHHHHHHTTCEEEECSC---------CTTC----------CHHHHHHHHTCCEEECSEETTSS-CSHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEcCCC---------Cccc----------HHHHHHHHcCCCeEEeeeecCCC-CCHHHHHHHHHHHHH
Confidence 466778999999997521 1111 1344566666654 4433 333333 333344
Q ss_pred HhhCCCeEEEEecCCCceeeee
Q 016960 140 HKKGDYTSIIHGKYSHEETVAT 161 (380)
Q Consensus 140 ~~~~Gy~iIIiG~~~HpEv~gi 161 (380)
++++--..|.||+. ||+++-.
T Consensus 206 ~Ar~~G~AIaIGhp-~p~Ti~a 226 (261)
T 2qv5_A 206 IARRNGQAIGVASA-FDESIAA 226 (261)
T ss_dssp HHHHHSEEEEEEEC-CHHHHHH
T ss_pred HHHhcCcEEEEeCC-CHHHHHH
Confidence 44443377889976 8875533
No 191
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=24.77 E-value=70 Score=29.78 Aligned_cols=133 Identities=10% Similarity=-0.030 Sum_probs=69.5
Q ss_pred ceeEEEEcCCC-ChHHHHHHHHHHHHHHhhhc--c-cccccccccccccccHHHHHhHHHHHHhhh-hcCCEEEEEccCC
Q 016960 218 VKVGIANQTTM-LKGETEEIGKLVEKTMMRKF--G-VENVNEHFISFNTICDATQERQDAMYKMVE-EKVDLILVVGGWN 292 (380)
Q Consensus 218 ~kv~vvsQTT~-~~~~~~~i~~~l~~~~~~~~--~-~~~~~~~~~~~nTIC~AT~~RQ~a~~eLa~-~~vD~miVVGG~n 292 (380)
.+|+++.-.|- ....+..+.+-+...+.+.- + .....-++.+.|+-|...... +++.+|.. .+||++ ||...
T Consensus 8 ~~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~N~~ggi~G~~l~l~~~d~~~~~~~~~-~~~~~l~~~~~v~~i--ig~~~ 84 (385)
T 1pea_A 8 PLIGLLFSETGVTADIERSQRYGALLAVEQLNREGGVGGRPIETLSQDPGGDPDRYR-LCAEDFIRNRGVRFL--VGCYM 84 (385)
T ss_dssp CEEEEECCSSSTTHHHHHHHHHHHHHHHHHHHTTTTBTTBCCEEEEECCTTCHHHHH-HHHHHHHHTTCCCEE--EECCS
T ss_pred eEEEEEECCCCcchhcCHHHHHHHHHHHHHhccccCCCCeEEEEEEeCCCCCHHHHH-HHHHHHHhhCCcEEE--ECCCc
Confidence 47888765443 23344555555544332220 0 000111355677766654443 45566663 578876 56667
Q ss_pred CchhHHHHHHHHHhCCCeEeeCCCCccCCCCcchhhh---ccchhhhhcccCC-CCCCEEEEEeCC
Q 016960 293 SSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL---MHGELVEKENWLP-KGQITIGITSGA 354 (380)
Q Consensus 293 SSNT~kL~eia~~~~~~t~~Ie~~~dL~~~~~~~~~~---~~~~~~~~~~wl~-~~~~~VGITAGA 354 (380)
|+.+..+.+++++.+.|.+.+......+. ....|.. -..+.....+||. .+.++|++..+.
T Consensus 85 s~~~~~~~~~~~~~~iP~v~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~g~~~ia~i~~~ 149 (385)
T 1pea_A 85 SHTRKAVMPVVERADALLCYPTPYEGFEY-SPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSD 149 (385)
T ss_dssp HHHHHHHHHHHHHTTCEEEECSCCCCCCC-CTTEEECSCCGGGTHHHHHHHHHTTTCSEEEEEEES
T ss_pred hHHHHHHHHHHHhcCceEEECCcccCccC-CCCEEEecCChHHhHHHHHHHHHHccCcEEEEEeCC
Confidence 77888889999888888877765422211 0111111 1111112223432 357899998874
No 192
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=24.66 E-value=58 Score=27.56 Aligned_cols=111 Identities=5% Similarity=-0.012 Sum_probs=58.0
Q ss_pred ChHHHHHHHHHHHHHHhhhcccccccccc-cccccccH----HHHHhHHHHHHhhhhcCCEEEEEccCCCchhHHHHHHH
Q 016960 229 LKGETEEIGKLVEKTMMRKFGVENVNEHF-ISFNTICD----ATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIA 303 (380)
Q Consensus 229 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~-~~~nTIC~----AT~~RQ~a~~eLa~~~vD~miVVGG~nSSNT~kL~eia 303 (380)
+....+..++.|++.++.+ ++ .+|. |. .+......+.+.+ ..+|.++++|-. ... ..+.+++
T Consensus 46 nP~si~a~l~al~~~~~~~--------riivvf~--~g~~s~r~k~~~~~~~~~~-~~aD~vi~~~~~-~~~-~~~~~~~ 112 (163)
T 3mvn_A 46 HPTAITATIDALRAKVGQQ--------RILAVLE--PRSNTMKMGVHKHELATSL-QDADSVFIYQPP-TIE-WQVSEVL 112 (163)
T ss_dssp SHHHHHHHHHHHHHHHTTS--------CEEEEEC--CC---------CHHHHHHH-TTCSEEEEECC------CCHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCC--------cEEEEEC--CCCcchhhHHHHHHHHHHH-hcCCEEEEECCC-Ccc-cCHHHHH
Confidence 6777888888887644421 12 2331 21 2333335555555 479999999833 111 2367777
Q ss_pred HHhCCCeEeeCCCCccCCCCcchhhhccchhhhhcccCCCCCCEEEEEeCCCCCHHHHHHHHHHH
Q 016960 304 EDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKV 368 (380)
Q Consensus 304 ~~~~~~t~~Ie~~~dL~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGITAGASTP~~lI~eV~~~l 368 (380)
+..+.+.+++++.+++-. + + .++. ...-+=++.|+=--+.+.+++++.|
T Consensus 113 ~~~~~~~~~~~d~~eai~-----~------~---~~~~--~~gDvVLv~Gsg~~~~~~~~l~~~l 161 (163)
T 3mvn_A 113 ANLAQPAISADDVDELVM-----R------I---VQQA--KPNDHILIMSNGAFGGIHQKLLTAL 161 (163)
T ss_dssp TTCCSCEEEESSHHHHHH-----H------H---HHHC--CTTCEEEEECSSCGGGHHHHHHHHT
T ss_pred hhCCCCeEEECCHHHHHH-----H------H---HHhC--CCCCEEEEECCCCHHHHHHHHHHHH
Confidence 666667777777665432 0 0 0233 2333445555544566666666554
No 193
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=24.63 E-value=1e+02 Score=25.81 Aligned_cols=39 Identities=10% Similarity=0.113 Sum_probs=32.3
Q ss_pred hcCCEEEEEcc-CCCchhHHHHHHHHHhCCCeEeeCCCCc
Q 016960 280 EKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEKR 318 (380)
Q Consensus 280 ~~vD~miVVGG-~nSSNT~kL~eia~~~~~~t~~Ie~~~d 318 (380)
++-|++|++.- -+|.++..+++.|++.|.++..|-+..+
T Consensus 109 ~~~Dvvi~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~ 148 (188)
T 1tk9_A 109 NEKDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKGG 148 (188)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEEGGG
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 47899999864 6788899999999999999998877543
No 194
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=24.42 E-value=3.3e+02 Score=23.21 Aligned_cols=40 Identities=13% Similarity=0.083 Sum_probs=24.2
Q ss_pred HHHHHHHHhcCCcE-EeccCchhHHHHHHHHHHhhCCCeEEEE
Q 016960 109 VEEMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKKGDYTSIIH 150 (380)
Q Consensus 109 ~~~~~~l~~~g~~v-iDaTCP~V~kv~~~v~~~~~~Gy~iIIi 150 (380)
.+..+.+++.|+.+ +|..+|. ..-..++++.+.|-..|.+
T Consensus 93 ~~~~~~~~~~g~~~~v~~~~~~--t~~~~~~~~~~~g~d~i~v 133 (211)
T 3f4w_A 93 QSCIRAAKEAGKQVVVDMICVD--DLPARVRLLEEAGADMLAV 133 (211)
T ss_dssp HHHHHHHHHHTCEEEEECTTCS--SHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHcCCeEEEEecCCC--CHHHHHHHHHHcCCCEEEE
Confidence 45677788889876 5655553 2234455566666665544
No 195
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=24.38 E-value=1.1e+02 Score=25.89 Aligned_cols=38 Identities=18% Similarity=0.160 Sum_probs=32.5
Q ss_pred hcCCEEEEEcc-CCCchhHHHHHHHHHhCCCeEeeCCCC
Q 016960 280 EKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEK 317 (380)
Q Consensus 280 ~~vD~miVVGG-~nSSNT~kL~eia~~~~~~t~~Ie~~~ 317 (380)
++-|++|++.- -+|.++.++++.|++.|.++..|.+..
T Consensus 108 ~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~ 146 (196)
T 2yva_A 108 HAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYD 146 (196)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 47899998854 678899999999999999999998764
No 196
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=24.32 E-value=3.9e+02 Score=24.00 Aligned_cols=90 Identities=11% Similarity=0.049 Sum_probs=47.3
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhccccccccccccc--ccccHHHHHhH-HHHHHhhhhcCCEEEEEccCCCc
Q 016960 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISF--NTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSS 294 (380)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~--nTIC~AT~~RQ-~a~~eLa~~~vD~miVVGG~nSS 294 (380)
..|+++....+.-.-|..+.+-+.+...+. + -++.++ ++-.....++| +.+..|.+..+|.+|+ .+. +.
T Consensus 44 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi-~~~-~~ 115 (342)
T 1jx6_A 44 IKISVVYPGQQVSDYWVRNIASFEKRLYKL-N-----INYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIF-TLD-TT 115 (342)
T ss_dssp EEEEEEECCCSSCCHHHHHHHHHHHHHHHT-T-----CCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEE-CCS-SS
T ss_pred eEEEEEecCCcccHHHHHHHHHHHHHHHHc-C-----CeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEE-eCC-hH
Confidence 478888765234455677777766543222 1 112222 11100123444 3455555568999998 432 22
Q ss_pred hhHHHHHHHHHhCCCeEee-CC
Q 016960 295 NTSHLQEIAEDRGIPSYWI-DS 315 (380)
Q Consensus 295 NT~kL~eia~~~~~~t~~I-e~ 315 (380)
....+++.+.+.+.|.+.+ +.
T Consensus 116 ~~~~~~~~~~~~~ip~V~~~~~ 137 (342)
T 1jx6_A 116 RHRKFVEHVLDSTNTKLILQNI 137 (342)
T ss_dssp TTHHHHHHHHHHCSCEEEEETC
T ss_pred hHHHHHHHHHHcCCCEEEEecC
Confidence 2344455556677787666 55
No 197
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=24.20 E-value=59 Score=32.55 Aligned_cols=30 Identities=23% Similarity=0.234 Sum_probs=26.6
Q ss_pred CCEEEEEccCCCchhHHHHHHHHHhCCCeE
Q 016960 282 VDLILVVGGWNSSNTSHLQEIAEDRGIPSY 311 (380)
Q Consensus 282 vD~miVVGG~nSSNT~kL~eia~~~~~~t~ 311 (380)
-.++.|||+..|+.|..++.++...+.|-+
T Consensus 116 ~~v~aviG~~~S~~s~~va~~~~~~~iP~I 145 (555)
T 2e4u_A 116 LLIAGVIGGSYSSVSIQVANLLRLFQIPQI 145 (555)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHGGGTCCEE
T ss_pred CceEEEECCCCcHHHHHHHHHHhCcCCceE
Confidence 458899999999999999999999988864
No 198
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=23.64 E-value=1.1e+02 Score=26.06 Aligned_cols=38 Identities=21% Similarity=0.245 Sum_probs=32.3
Q ss_pred hcCCEEEEEcc-CCCchhHHHHHHHHHhCCCeEeeCCCC
Q 016960 280 EKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEK 317 (380)
Q Consensus 280 ~~vD~miVVGG-~nSSNT~kL~eia~~~~~~t~~Ie~~~ 317 (380)
++-|++|++.- -+|.++.++++.|++.|.++..|.+..
T Consensus 112 ~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~ 150 (199)
T 1x92_A 112 QPGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRD 150 (199)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 47899998854 678899999999999999999997753
No 199
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A
Probab=23.60 E-value=2.8e+02 Score=22.12 Aligned_cols=108 Identities=10% Similarity=0.086 Sum_probs=56.2
Q ss_pred cccccccHHHHHhHHHHHHhhhhcCCEEEEEccCCCchhHHHHHHHHHhCCCeE--eeCCCCccCCCCcchhhhccchhh
Q 016960 258 ISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSY--WIDSEKRIGPGNKIAYKLMHGELV 335 (380)
Q Consensus 258 ~~~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGG~nSSNT~kL~eia~~~~~~t~--~Ie~~~dL~~~~~~~~~~~~~~~~ 335 (380)
.++.+.|..-..=...+.+|+...+.++.|--+. +...+.+..++.+.+-. ..+...++.. .|... .+
T Consensus 57 ~F~a~~C~~C~~~~~~l~~l~~~~v~vv~v~~~~---~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~v~---~~ 126 (168)
T 2b1k_A 57 NVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYKD---DRQKAISWLKELGNPYALSLFDGDGMLGL----DLGVY---GA 126 (168)
T ss_dssp EEECTTCHHHHHHHHHHHHHHHTTCCEEEEEESC---CHHHHHHHHHHHCCCCSEEEEETTCHHHH----HHTCC---SS
T ss_pred EEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCC---ChHHHHHHHHHcCCCCceeeECcchHHHH----HcCcc---cc
Confidence 3668889886665677777874345555443222 23455556666654321 1222211110 00000 00
Q ss_pred hhcccCCCCCCEEEEEeCCCCCHHHHHHHHHHHHhhhhhh
Q 016960 336 EKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKREE 375 (380)
Q Consensus 336 ~~~~wl~~~~~~VGITAGASTP~~lI~eV~~~l~~~~~~~ 375 (380)
-..-.+..+.+.+....|..+++.+.+.+...|.+...+.
T Consensus 127 P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~~~~~~ 166 (168)
T 2b1k_A 127 PETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWEKYSKEA 166 (168)
T ss_dssp SEEEEECTTSBEEEEEESCCCHHHHHHTTHHHHHHHHHHH
T ss_pred CEEEEECCCCeEEEEEeCCCCHHHHHHHHHHHHHHHHHhh
Confidence 0001121345667788898889888887777777665543
No 200
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=23.35 E-value=97 Score=27.09 Aligned_cols=39 Identities=21% Similarity=0.187 Sum_probs=32.7
Q ss_pred hcCCEEEEEc-cCCCchhHHHHHHHHHhCCCeEeeCCCCc
Q 016960 280 EKVDLILVVG-GWNSSNTSHLQEIAEDRGIPSYWIDSEKR 318 (380)
Q Consensus 280 ~~vD~miVVG-G~nSSNT~kL~eia~~~~~~t~~Ie~~~d 318 (380)
++-|++|++. +-+|.++..+++.|++.|.++..|-+..+
T Consensus 113 ~~~Dvvi~iS~SG~t~~~~~~~~~ak~~g~~vi~iT~~~~ 152 (201)
T 3trj_A 113 NEDDILLVITTSGDSENILSAVEEAHDLEMKVIALTGGSG 152 (201)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEETTC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 5789999995 46788889999999999999999877543
No 201
>3gnh_A L-lysine, L-arginine carboxypeptidase CC2672; N-methyl phosphonate derivative of L- arginine, hydrolase; HET: KCX M3R; 1.70A {Caulobacter crescentus CB15} PDB: 3mtw_A*
Probab=23.17 E-value=4e+02 Score=24.46 Aligned_cols=94 Identities=12% Similarity=-0.055 Sum_probs=54.2
Q ss_pred CCcccHHHHHHHHHHHHhhCCC-CceEEeccc----------ccCHH----HHHHHHHcCcEEecCCccccccccc-cCC
Q 016960 34 GFCWGVERAVQIAYEARKQFPE-EKIWITNEI----------IHNPT----VNKRLEEMAVQNIPVEEGKKQFDVV-NKG 97 (380)
Q Consensus 34 GFC~GV~RAI~~a~~~~~~~~~-~~Iy~lG~L----------IHN~~----Vv~~L~~~Gv~~v~~~~~~~~~~el-~~g 97 (380)
+++.+.+.+.+.+.+..+...+ -++|.-|.+ --.+. +++...+.|+.+.-...+...+... .-|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~g~~~ik~~~~G~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~~i~~~~~~g 240 (403)
T 3gnh_A 161 FNSDSPDEARKAVRTLKKYGAQVIKICATGGVFSRGNEPGQQQLTYEEMKAVVDEAHMAGIKVAAHAHGASGIREAVRAG 240 (403)
T ss_dssp TCCCSHHHHHHHHHHHHHTTCSEEEEECBCCSSSSSCCTTCBCSCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHHHHcCCCEEEEeecCCcCCCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhC
Confidence 4567888888888887765321 146655432 33443 4455567798875432211111111 124
Q ss_pred CEEEEcCCCCCHHHHHHHHhcCCcEEeccCch
Q 016960 98 DVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPW 129 (380)
Q Consensus 98 ~~VIIrAHGv~~~~~~~l~~~g~~viDaTCP~ 129 (380)
-..|.=...++++..+.++++|+.++ +||+
T Consensus 241 ~~~i~H~~~~~~~~~~~~~~~g~~~~--~~~~ 270 (403)
T 3gnh_A 241 VDTIEHASLVDDEGIKLAVQKGAYFS--MDIY 270 (403)
T ss_dssp CSEEEECTTCCHHHHHHHHHHTCEEE--CCCS
T ss_pred CCEEecCCcCCHHHHHHHHHCCCEEE--eeec
Confidence 33454344459999999999999886 4543
No 202
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=23.11 E-value=3.3e+02 Score=27.27 Aligned_cols=41 Identities=10% Similarity=0.105 Sum_probs=24.3
Q ss_pred HHHHHHHhcCCcE-Eec-cCchhHHHHHHHHHHhhCCCe-EEEEecC
Q 016960 110 EEMVTLNNKNVQI-VDT-TCPWVSKVWTSVEKHKKGDYT-SIIHGKY 153 (380)
Q Consensus 110 ~~~~~l~~~g~~v-iDa-TCP~V~kv~~~v~~~~~~Gy~-iIIiG~~ 153 (380)
++.+.|++.|+.+ +|- .-+-++ ++.+...+.|.. +||+|+.
T Consensus 437 ~l~~~Lr~~Gi~ve~~~~~~~~l~---~q~k~A~~~g~~~~viiG~~ 480 (517)
T 4g85_A 437 KLVSELWDAGIKAELLYKKNPKLL---NQLQYCEEAGIPLVAIIGEQ 480 (517)
T ss_dssp HHHHHHHHTTCCEEECSSSSCCHH---HHHHHHHHHCCCEEEEECHH
T ss_pred HHHHHHHHCCCcEEEEeCCCCCHH---HHHHHHHHCCCCEEEEECCh
Confidence 5778888999887 553 333344 344444455654 5666754
No 203
>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}
Probab=23.05 E-value=78 Score=31.10 Aligned_cols=58 Identities=10% Similarity=0.089 Sum_probs=38.0
Q ss_pred CCEEEEcCCCCCHHHHHHHHhcCCcEEeccCch------hHHHHHHHHHHhh--------------CCCeEEEEecCCC
Q 016960 97 GDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPW------VSKVWTSVEKHKK--------------GDYTSIIHGKYSH 155 (380)
Q Consensus 97 g~~VIIrAHGv~~~~~~~l~~~g~~viDaTCP~------V~kv~~~v~~~~~--------------~Gy~iIIiG~~~H 155 (380)
.|.+++|.+. ...+.+.++..++.||.|=|.. -.-+..+-+.+.. +|-+|.++||-+|
T Consensus 122 ~D~IviR~~~-~~~~~~lA~~s~vPVINag~d~~HPtQaLaDl~TI~E~~G~~~~~~~~~~~~~~l~glkva~vGD~~n 199 (353)
T 3sds_A 122 VSCIVARVGP-HSDIANLAKHSSVPVINALCDTFHPLQAIADFLTIHESFASQSATHGTHPSSLGLEGLKIAWVGDANN 199 (353)
T ss_dssp CSEEEEECSS-HHHHHHHHHHCSSCEEEEECSSCCHHHHHHHHHHHHHHTC--------CTTCCSCTTCEEEEESCCCH
T ss_pred cCEEEEEeCC-hHHHHHHHhhCCCCEEECCCCCCCcHHHHHHHHHHHHHhCCCcccccccccccccCCCEEEEECCCch
Confidence 4678999543 2345556667889999995432 2333444445544 7999999999876
No 204
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A* 3q3c_A*
Probab=23.02 E-value=4.2e+02 Score=23.87 Aligned_cols=91 Identities=9% Similarity=-0.046 Sum_probs=53.3
Q ss_pred HHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCcccccccc-ccCCCEEEEcCCCCCHHHHHHHH-------
Q 016960 45 IAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDV-VNKGDVVVLPAFGAAVEEMVTLN------- 116 (380)
Q Consensus 45 ~a~~~~~~~~~~~Iy~lG~LIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~e-l~~g~~VIIrAHGv~~~~~~~l~------- 116 (380)
+|...++. +-+|+.+ -.|+...+.|.+.|+.+..+ +.+ +..-| |||-+=..+..+.+.+.
T Consensus 18 ~a~~l~~~--G~~V~~~---d~~~~~~~~~~~~g~~~~~~------~~~~~~~aD-vvi~~vp~~~~~~~v~~~~~~~~~ 85 (302)
T 2h78_A 18 MATNLLKA--GYLLNVF---DLVQSAVDGLVAAGASAARS------ARDAVQGAD-VVISMLPASQHVEGLYLDDDGLLA 85 (302)
T ss_dssp HHHHHHHT--TCEEEEE---CSSHHHHHHHHHTTCEECSS------HHHHHTTCS-EEEECCSCHHHHHHHHHSSSCGGG
T ss_pred HHHHHHhC--CCeEEEE---cCCHHHHHHHHHCCCeEcCC------HHHHHhCCC-eEEEECCCHHHHHHHHcCchhHHh
Confidence 44444443 3467766 35888999999999988754 233 33446 44444444444555443
Q ss_pred --hcCCcEEeccCchhHHHHHHHHHHhhCCCeE
Q 016960 117 --NKNVQIVDTTCPWVSKVWTSVEKHKKGDYTS 147 (380)
Q Consensus 117 --~~g~~viDaTCP~V~kv~~~v~~~~~~Gy~i 147 (380)
..|..|||.+=-.........+.+.+.|..+
T Consensus 86 ~l~~~~~vi~~st~~~~~~~~l~~~~~~~g~~~ 118 (302)
T 2h78_A 86 HIAPGTLVLECSTIAPTSARKIHAAARERGLAM 118 (302)
T ss_dssp SSCSSCEEEECSCCCHHHHHHHHHHHHHTTCCE
T ss_pred cCCCCcEEEECCCCCHHHHHHHHHHHHHcCCEE
Confidence 3577889965444444445555555667654
No 205
>1xty_A PTH, peptidyl-tRNA hydrolase; mixed beta sheet; 1.80A {Pyrococcus abyssi}
Probab=22.95 E-value=59 Score=26.89 Aligned_cols=61 Identities=16% Similarity=0.254 Sum_probs=42.7
Q ss_pred EEEEEccCCCchhHHHHHHHHHhCCCeEeeCCCC--ccCCCCcchhhhccchhhhhcccCCCCCCEEEEEeCCCCCHHHH
Q 016960 284 LILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEK--RIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAV 361 (380)
Q Consensus 284 ~miVVGG~nSSNT~kL~eia~~~~~~t~~Ie~~~--dL~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGITAGASTP~~lI 361 (380)
--+|+..+++.-=..|.+-+++.|.+++.|.++. |+++ .....+|| .=.|...|
T Consensus 55 ~KiVlk~~~e~el~~l~~~a~~~gl~~~~i~DAG~Tei~~---------------------gs~Tvlai---gP~~~~~v 110 (120)
T 1xty_A 55 PKIIVKVNSLDEIISRAKKAETMNLPFSIIEDAGKTQLEP---------------------GTITCLGI---GPAPENLV 110 (120)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCSSSSSCT---------------------TCEEEEEE---EEEEHHHH
T ss_pred cEEEEecCCHHHHHHHHHHHHHCCCCEEEEEcCCccccCC---------------------CCeEEEEe---ccCCHHHH
Confidence 4566767766667788888888999999998885 4444 23446666 35577888
Q ss_pred HHHHHHH
Q 016960 362 EDVLKKV 368 (380)
Q Consensus 362 ~eV~~~l 368 (380)
++|...|
T Consensus 111 d~itg~L 117 (120)
T 1xty_A 111 DSITGDL 117 (120)
T ss_dssp HHHHTTC
T ss_pred HHHhCCC
Confidence 8876543
No 206
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=22.67 E-value=3.3e+02 Score=22.58 Aligned_cols=94 Identities=13% Similarity=0.059 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhCCCCceEEec---ccccCHHHHHHHHHcCcEEecCCccccccccccCCCEE-EEcCCCCCHH---HH
Q 016960 40 ERAVQIAYEARKQFPEEKIWITN---EIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVV-VLPAFGAAVE---EM 112 (380)
Q Consensus 40 ~RAI~~a~~~~~~~~~~~Iy~lG---~LIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~el~~g~~V-IIrAHGv~~~---~~ 112 (380)
...++.+-+.+.+ .++||++| .-.=-.....+|...|..+.--.+.. ...+.++|.| +|+..|-+++ ..
T Consensus 24 ~~~i~~~~~~i~~--a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~--~~~~~~~d~vI~iS~sG~t~~~~~~~ 99 (186)
T 1m3s_A 24 NEEADQLADHILS--SHQIFTAGAGRSGLMAKSFAMRLMHMGFNAHIVGEIL--TPPLAEGDLVIIGSGSGETKSLIHTA 99 (186)
T ss_dssp HHHHHHHHHHHHH--CSCEEEECSHHHHHHHHHHHHHHHHTTCCEEETTSTT--CCCCCTTCEEEEECSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHc--CCeEEEEecCHHHHHHHHHHHHHHhcCCeEEEeCccc--ccCCCCCCEEEEEcCCCCcHHHHHHH
Q ss_pred HHHHhcCCcEEeccCchhHHHHHHH
Q 016960 113 VTLNNKNVQIVDTTCPWVSKVWTSV 137 (380)
Q Consensus 113 ~~l~~~g~~viDaTCP~V~kv~~~v 137 (380)
+.++++|..+|=-|+.--..+.+.+
T Consensus 100 ~~ak~~g~~vi~IT~~~~s~l~~~a 124 (186)
T 1m3s_A 100 AKAKSLHGIVAALTINPESSIGKQA 124 (186)
T ss_dssp HHHHHTTCEEEEEESCTTSHHHHHC
T ss_pred HHHHHCCCEEEEEECCCCCchHHhC
No 207
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=22.66 E-value=4.2e+02 Score=26.15 Aligned_cols=105 Identities=17% Similarity=0.161 Sum_probs=58.0
Q ss_pred ceEEEEeCCCCCcc----cHHHHHHHHHHHHhh---CCCCceEEecccccCH----HHHHHHHHcCcEEec---------
Q 016960 24 NVKVKLAESYGFCW----GVERAVQIAYEARKQ---FPEEKIWITNEIIHNP----TVNKRLEEMAVQNIP--------- 83 (380)
Q Consensus 24 ~mkI~lA~~~GFC~----GV~RAI~~a~~~~~~---~~~~~Iy~lG~LIHN~----~Vv~~L~~~Gv~~v~--------- 83 (380)
+..|+-+..-||.. |...|++-..+.+.. .....|=++|.. +++ ++..-|++.|+.++.
T Consensus 131 ~~pvi~v~tpgf~gs~~~G~~~a~~al~~~l~~~~~~~~~~VNilg~~-~~~~d~~eik~lL~~~Gi~v~~l~d~s~~ld 209 (458)
T 1mio_B 131 GKLVIHTNTPSYVGSHVTGFANMVQGIVNYLSENTGAKNGKINVIPGF-VGPADMREIKRLFEAMDIPYIMFPDTSGVLD 209 (458)
T ss_dssp TCEEEEECCCTTSSCHHHHHHHHHHHHHHHHCCCCSCCCSCEEEECCS-CCHHHHHHHHHHHHHHTCCEEESSCCTTTSS
T ss_pred CCeEEEEECCCCcccHHHHHHHHHHHHHHHHccccCCCCCcEEEECCC-CCHHHHHHHHHHHHHcCCcEEEecccccccc
Confidence 47789999999984 444444443333321 112368899877 333 455566889999874
Q ss_pred --------CC----ccccccccccCCC-EEEEcCCCCCHHHHHHHHhc-CCcEEeccCchh
Q 016960 84 --------VE----EGKKQFDVVNKGD-VVVLPAFGAAVEEMVTLNNK-NVQIVDTTCPWV 130 (380)
Q Consensus 84 --------~~----~~~~~~~el~~g~-~VIIrAHGv~~~~~~~l~~~-g~~viDaTCP~V 130 (380)
.. ...+++..++... ++++... .....-+.|+++ |+..+-...|+-
T Consensus 210 ~~~~~~~~~~~~gg~~~~ei~~~~~A~~niv~~~~-~~~~~A~~Le~~~GiP~~~~~~p~G 269 (458)
T 1mio_B 210 GPTTGEYKMYPEGGTKIEDLKDTGNSDLTLSLGSY-ASDLGAKTLEKKCKVPFKTLRTPIG 269 (458)
T ss_dssp CCCCSSCCSSCSCSBCHHHHHTTSSCSEEEEESHH-HHHHHHHHHHHHSCCCEEEECCCBH
T ss_pred CcccCccceeCCCCCcHHHHHhhccCCEEEEEchh-hHHHHHHHHHHHhCCCEEecCCCcC
Confidence 11 1122222332222 2333221 224555666655 788888777773
No 208
>2zv3_A PTH, peptidyl-tRNA hydrolase; cytoplasm, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=22.50 E-value=37 Score=27.93 Aligned_cols=62 Identities=15% Similarity=0.253 Sum_probs=41.0
Q ss_pred CEEEEEccCCCchhHHHHHHHHHhCCCeEeeCCCC--ccCCCCcchhhhccchhhhhcccCCCCCCEEEEEeCCCCCHHH
Q 016960 283 DLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEK--RIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKA 360 (380)
Q Consensus 283 D~miVVGG~nSSNT~kL~eia~~~~~~t~~Ie~~~--dL~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGITAGASTP~~l 360 (380)
---+|+..+++.-=..|.+-+++.|.+++.|.++. |+++ .....+|| .=.|...
T Consensus 49 ~~kivlk~~~e~~l~~l~~~a~~~gl~~~~i~DAG~Tei~~---------------------gt~Tvlai---gP~~~~~ 104 (115)
T 2zv3_A 49 QKKVVVKVNSEKELIDIYNKARSEGLPCSIIRDAGHTQLEP---------------------GTLTAVAI---GPEKDEK 104 (115)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHTCCEEEEEECC----------------------------EEEEEEE---EEECHHH
T ss_pred CeEEEEecCCHHHHHHHHHHHHHcCCCEEEEEeCCceecCC---------------------CCEEEEEe---CcCCHHH
Confidence 34566766766667788888889999999998876 4444 22345666 3567888
Q ss_pred HHHHHHHH
Q 016960 361 VEDVLKKV 368 (380)
Q Consensus 361 I~eV~~~l 368 (380)
|++|...|
T Consensus 105 vd~itg~l 112 (115)
T 2zv3_A 105 IDKITGHL 112 (115)
T ss_dssp HHHHHTTS
T ss_pred HHHHhCCC
Confidence 88876544
No 209
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=22.39 E-value=3.5e+02 Score=24.42 Aligned_cols=90 Identities=9% Similarity=-0.065 Sum_probs=51.8
Q ss_pred hhHHHHHHHcCCcceecceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHc-CcEEecCC
Q 016960 7 SDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEM-AVQNIPVE 85 (380)
Q Consensus 7 ~~~~~~~~~~~~~~~~g~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Iy~lG~LIHN~~Vv~~L~~~-Gv~~v~~~ 85 (380)
|--|+-++-.|.-+.+.+++|++. .|-+-|...+...++. +..|.+..+=++ +. ++.|.+. ++..+...
T Consensus 14 ~~~~~~~~~~Pifl~L~gk~VLVV------GgG~va~~ka~~Ll~~--GA~VtVvap~~~-~~-l~~l~~~~~i~~i~~~ 83 (223)
T 3dfz_A 14 SGHIEGRHMYTVMLDLKGRSVLVV------GGGTIATRRIKGFLQE--GAAITVVAPTVS-AE-INEWEAKGQLRVKRKK 83 (223)
T ss_dssp --------CCEEEECCTTCCEEEE------CCSHHHHHHHHHHGGG--CCCEEEECSSCC-HH-HHHHHHTTSCEEECSC
T ss_pred cCcccccCccccEEEcCCCEEEEE------CCCHHHHHHHHHHHHC--CCEEEEECCCCC-HH-HHHHHHcCCcEEEECC
Confidence 344555555566666778999988 4447788888878775 346888877544 33 4555554 47777542
Q ss_pred ccccccccccCCCEEEEcCCCCCHH
Q 016960 86 EGKKQFDVVNKGDVVVLPAFGAAVE 110 (380)
Q Consensus 86 ~~~~~~~el~~g~~VIIrAHGv~~~ 110 (380)
- ..+++. +..+||-|-|.+.-
T Consensus 84 ~---~~~dL~-~adLVIaAT~d~~~ 104 (223)
T 3dfz_A 84 V---GEEDLL-NVFFIVVATNDQAV 104 (223)
T ss_dssp C---CGGGSS-SCSEEEECCCCTHH
T ss_pred C---CHhHhC-CCCEEEECCCCHHH
Confidence 1 123443 44477778777643
No 210
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=22.35 E-value=3.9e+02 Score=25.04 Aligned_cols=89 Identities=18% Similarity=0.171 Sum_probs=49.2
Q ss_pred HHHHHhhhhcCCEEEEEccCCCchhHHHHHHHHHhCCCeEeeCCCCccCCCCcchhhhccchhhhhcccCCCCCCEEEEE
Q 016960 272 DAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGIT 351 (380)
Q Consensus 272 ~a~~eLa~~~vD~miVVGG~nSSNT~kL~eia~~~~~~t~~Ie~~~dL~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGIT 351 (380)
+++..|..+++|+++.-.+ -.....++-..+..-|.+....+....+-...-.| . .-| .-..-.||.
T Consensus 176 ~a~~aL~~G~VD~~~~~~~-------~~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~E~G-~----~~~-~~~~w~gl~ 242 (312)
T 2f5x_A 176 PAMNDLLGKQVDLMCDQTT-------NTTQQITSGKVKAYAVTSLKRVPTLPDLPTMDESG-Y----KGF-EVGIWHGMW 242 (312)
T ss_dssp HHHHHHHTTSSCEEEEEHH-------HHHHHHHTTSSEEEEECSSSCCTTSTTSCBTTTTT-C----TTC-CCEEEEEEE
T ss_pred HHHHHHHcCCccEEEechH-------HHHHHHHcCCeEEEEEcCccchhhcCCCCCHhhcC-C----CCe-eEEEEEEEE
Confidence 5677777789999987542 23333433334556565544332210000000000 0 001 011246888
Q ss_pred eCCCCCHHHHHHHHHHHHhhhh
Q 016960 352 SGASTPDKAVEDVLKKVFEIKR 373 (380)
Q Consensus 352 AGASTP~~lI~eV~~~l~~~~~ 373 (380)
+=+.||+.+++++.+.|.++..
T Consensus 243 ap~g~p~~vv~~l~~al~~~~~ 264 (312)
T 2f5x_A 243 APKGTPKPVVDKLVKSLQAGLA 264 (312)
T ss_dssp EETTCCHHHHHHHHHHHHHHHT
T ss_pred EcCCCCHHHHHHHHHHHHHHHc
Confidence 9999999999999999987643
No 211
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=22.27 E-value=1.3e+02 Score=28.57 Aligned_cols=36 Identities=28% Similarity=0.324 Sum_probs=26.4
Q ss_pred hcCCEEEEEccCCC-chhHHHHHHHHHhCCCeEeeCC
Q 016960 280 EKVDLILVVGGWNS-SNTSHLQEIAEDRGIPSYWIDS 315 (380)
Q Consensus 280 ~~vD~miVVGG~nS-SNT~kL~eia~~~~~~t~~Ie~ 315 (380)
.++|++||||-.-. .-...|.+.+++.|.+.+.|.-
T Consensus 215 ~~aDllLviGTSl~V~Paa~l~~~a~~~g~~~v~IN~ 251 (290)
T 3u31_A 215 AKCDLLLVIGTSSTVSTATNLCHFACKKKKKIVEINI 251 (290)
T ss_dssp HHCSEEEEESCCSCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred hcCCEEEEECcCCcchhHHHHHHHHHHcCCEEEEECC
Confidence 37999999996332 2334788888888888887764
No 212
>3o3m_A Alpha subunit 2-hydroxyisocaproyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_A* 3o3o_A
Probab=22.25 E-value=81 Score=31.01 Aligned_cols=53 Identities=9% Similarity=-0.085 Sum_probs=40.1
Q ss_pred CCCCcccHHHHHHHHHHHHhh--------------CCCCceEEecccc--cCHHHHHHHHHcCcEEecC
Q 016960 32 SYGFCWGVERAVQIAYEARKQ--------------FPEEKIWITNEII--HNPTVNKRLEEMAVQNIPV 84 (380)
Q Consensus 32 ~~GFC~GV~RAI~~a~~~~~~--------------~~~~~Iy~lG~LI--HN~~Vv~~L~~~Gv~~v~~ 84 (380)
...|..|.+++++..++.+++ ..+.+|++.|-.+ .|+.+.+.|++.|+.+|-+
T Consensus 220 ~~~~~~~~~~~~~~~~~l~~el~~r~~~g~~~~~~~~~~Ril~~G~p~~~~~~~l~~~le~~G~~vV~~ 288 (408)
T 3o3m_A 220 VIVCARGKKETTEAFKLLIEELEDNMKTGKSSFRGEEKYRIMMEGIPCWPYIGYKMKTLAKFGVNMTGS 288 (408)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHHHHTCCSSCSCCCEEEEEESCCCGGGHHHHHHHHHHHTEEEEEC
T ss_pred HHhccCChHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCceEEEECCCCcccHHHHHHHHHhCCCEEEEE
Confidence 346888999999888664421 1234799999764 6788999999999999964
No 213
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=22.25 E-value=1e+02 Score=26.82 Aligned_cols=38 Identities=18% Similarity=0.268 Sum_probs=32.3
Q ss_pred hcCCEEEEEc-cCCCchhHHHHHHHHHhCCCeEeeCCCC
Q 016960 280 EKVDLILVVG-GWNSSNTSHLQEIAEDRGIPSYWIDSEK 317 (380)
Q Consensus 280 ~~vD~miVVG-G~nSSNT~kL~eia~~~~~~t~~Ie~~~ 317 (380)
.+-|++|+|. +-+|.++..+++.|++.|.++.-|-+..
T Consensus 130 ~~~DvvI~iS~SG~t~~~i~~~~~ak~~G~~vIaIT~~~ 168 (212)
T 2i2w_A 130 REGDVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKD 168 (212)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEEETT
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCCCeEEEEECCC
Confidence 4789999886 4677899999999999999999997754
No 214
>1ny1_A Probable polysaccharide deacetylase PDAA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.6.2.3 PDB: 1w17_A 1w1b_1 1w1a_1
Probab=22.06 E-value=4.1e+02 Score=23.59 Aligned_cols=44 Identities=9% Similarity=0.027 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhhC-CC--CceEEecccccCHHHHHHHHHcCcEEec
Q 016960 40 ERAVQIAYEARKQF-PE--EKIWITNEIIHNPTVNKRLEEMAVQNIP 83 (380)
Q Consensus 40 ~RAI~~a~~~~~~~-~~--~~Iy~lG~LIHN~~Vv~~L~~~Gv~~v~ 83 (380)
++=|..+.+.+++. +. .+.|..----.|+.+.+.|++.|..++.
T Consensus 117 ~~ei~~~~~~l~~~~G~~~~~~fr~P~G~~~~~~~~~l~~~G~~~v~ 163 (240)
T 1ny1_A 117 QDELDSVNEEVYKITGKQDNLYLRPPRGVFSEYVLKETKRLGYQTVF 163 (240)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCEECCGGGEECHHHHHHHHHTTCEEBC
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEeCCCCCCCHHHHHHHHHcCCEEEE
Confidence 33344445555431 11 2455554456899999999999999875
No 215
>2y8u_A Chitin deacetylase; hydrolase; 1.99A {Emericella nidulans}
Probab=21.71 E-value=4.2e+02 Score=23.54 Aligned_cols=43 Identities=9% Similarity=-0.029 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhh--CCCCceEEecccccCHHHHHHHHHcCcEEec
Q 016960 41 RAVQIAYEARKQ--FPEEKIWITNEIIHNPTVNKRLEEMAVQNIP 83 (380)
Q Consensus 41 RAI~~a~~~~~~--~~~~~Iy~lG~LIHN~~Vv~~L~~~Gv~~v~ 83 (380)
+=|+.+.+++++ +...+.|..----.|+.+.+.|++.|..++.
T Consensus 107 ~ei~~~~~~l~~~~G~~~~~fr~P~G~~~~~~~~~l~~~G~~~~~ 151 (230)
T 2y8u_A 107 SQMTRLEEVIRPALGVAPAYMRPPYLETNELVLQVMRDLDYRVIS 151 (230)
T ss_dssp HHHHHHHHHHHHHHSSCBSEECCGGGCCCHHHHHHHHHTTCEEEC
T ss_pred HHHHHHHHHHHHHhCCCCcEEECCCCCCCHHHHHHHHHcCCEEEE
Confidence 334444454443 1112455544456799999999999999885
No 216
>3izc_H 60S ribosomal protein RPL8 (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_H 3o58_H 3o5h_H 3u5e_G 3u5i_G 4b6a_G
Probab=21.59 E-value=1.5e+02 Score=28.01 Aligned_cols=75 Identities=15% Similarity=0.295 Sum_probs=50.8
Q ss_pred hhcCCEEEEEccCCCch-hHHHHHHHHHhCCCeEeeCCCCccCCCCcchhhhccchhhhhcccCC-CCCCEEEEEeCCCC
Q 016960 279 EEKVDLILVVGGWNSSN-TSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLP-KGQITIGITSGAST 356 (380)
Q Consensus 279 ~~~vD~miVVGG~nSSN-T~kL~eia~~~~~~t~~Ie~~~dL~~~~~~~~~~~~~~~~~~~~wl~-~~~~~VGITAGAST 356 (380)
.+++-++|+..+-.... ...|..+|++.+.|.+++.+-.||-. |.- ..+.+|+||--.+-
T Consensus 145 kgKAkLVVIA~DadP~eivk~LpaLC~k~gVPy~~V~sK~eLG~------------------A~Gkk~~s~VAItD~g~e 206 (256)
T 3izc_H 145 NKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIVKGKARLGT------------------LVNQKTSAVAALTEVRAE 206 (256)
T ss_dssp HTCCSEEEEESCCSSGGGTTHHHHHHHHHTCCEEEESCHHHHHH------------------HTTCSSCCSEEEESSCCS
T ss_pred hCcceEEEEeCCCChHHHHHHHHHHHHhcCCCEEEECCHHHHHH------------------HhCCCCcEEEEeecCChh
Confidence 35677766665554432 33567999999999999999988853 220 24678999976654
Q ss_pred CHHHHHHHHHHHHhh
Q 016960 357 PDKAVEDVLKKVFEI 371 (380)
Q Consensus 357 P~~lI~eV~~~l~~~ 371 (380)
-......++++++..
T Consensus 207 Dk~al~kLve~iktn 221 (256)
T 3izc_H 207 DEAALAKLVSTIDAN 221 (256)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhh
Confidence 445557777777654
No 217
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=21.49 E-value=37 Score=31.82 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=29.7
Q ss_pred HHHHhhhhcCCEEEEEccCCCchhHHHHHHHHHhCCCeEee
Q 016960 273 AMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWI 313 (380)
Q Consensus 273 a~~eLa~~~vD~miVVGG~nSSNT~kL~eia~~~~~~t~~I 313 (380)
++.+|.+.. +..|||+..|+.+..+..++.+.+.|..--
T Consensus 63 ~a~~l~~~~--V~aiiG~~~S~~~~a~~~~~~~~~ip~is~ 101 (395)
T 3h6g_A 63 KACDQLSLG--VAAIFGPSHSSSANAVQSICNALGVPHIQT 101 (395)
T ss_dssp HHHHHHHHC--CSCEECCSSHHHHHHHHHHHHHTTCCEEEC
T ss_pred HHHHhhhcC--cEEEECCCChhHHHHHHHHHhcCCCCeEee
Confidence 344555333 556789999999999999999999887644
No 218
>1vpq_A Hypothetical protein TM1631; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.1.32.1
Probab=21.46 E-value=67 Score=30.19 Aligned_cols=86 Identities=8% Similarity=-0.018 Sum_probs=47.7
Q ss_pred eecceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEec-CCcc----cccccccc
Q 016960 21 TWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIP-VEEG----KKQFDVVN 95 (380)
Q Consensus 21 ~~g~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Iy~lG~LIHN~~Vv~~L~~~Gv~~v~-~~~~----~~~~~el~ 95 (380)
.+|.+=+.+.-++++...-...++...+.+ ..+ --|=.-++=-.++.+.+-|++.|+..|- +... ......+
T Consensus 119 kLG~vL~Q~Ppsf~~~~~~~~~L~~l~~~l-~~~-~AvE~Rh~sW~~~~~~~lL~~~~v~~V~~D~~~~~~~~P~~~~~- 195 (273)
T 1vpq_A 119 RLKMTLAQFPFSFKFSRKNVEYLEKLRESY-PYE-LAVEFRHYSWDREETYEFLRNHGITFVVVDEPKLPGLFPYRPIT- 195 (273)
T ss_dssp CEEEEEEECCTTCCCCHHHHHHHHHHHHHC-CSC-EEEECCBGGGCSHHHHHHHHHHTCEEEEEECCCCTTBCCCCCCC-
T ss_pred CEEEEEEEcCCCCCCCHHHHHHHHHHHHHc-CCC-EEEEccCchhccHHHHHHHHHcCcEEEEeCCCCCCCCCCccccc-
Confidence 456666666666665443333344332222 111 1133344444568999999999998763 2111 1111122
Q ss_pred CCCEEEEcCCCCCH
Q 016960 96 KGDVVVLPAFGAAV 109 (380)
Q Consensus 96 ~g~~VIIrAHGv~~ 109 (380)
.++.+.+|-||-+.
T Consensus 196 t~~~~yvRlHG~~~ 209 (273)
T 1vpq_A 196 TTDYAYFRFHGRNE 209 (273)
T ss_dssp SSSEEEEEECCCCT
T ss_pred CCCceEEEEeCCCc
Confidence 46889999999764
No 219
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=21.44 E-value=1.5e+02 Score=27.88 Aligned_cols=17 Identities=24% Similarity=0.224 Sum_probs=13.5
Q ss_pred hcCCEEEEEccCCCchh
Q 016960 280 EKVDLILVVGGWNSSNT 296 (380)
Q Consensus 280 ~~vD~miVVGG~nSSNT 296 (380)
..+|++||+||-.+=|.
T Consensus 81 ~~~d~vvv~GGDGTl~~ 97 (332)
T 2bon_A 81 FGVATVIAGGGDGTINE 97 (332)
T ss_dssp HTCSEEEEEESHHHHHH
T ss_pred cCCCEEEEEccchHHHH
Confidence 57999999999866443
No 220
>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}
Probab=21.40 E-value=2.5e+02 Score=25.78 Aligned_cols=93 Identities=13% Similarity=0.001 Sum_probs=58.0
Q ss_pred HHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCcEEecCCccccccccc-cCCCEEEEcCCCCCHHHHHHHH------
Q 016960 44 QIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVV-NKGDVVVLPAFGAAVEEMVTLN------ 116 (380)
Q Consensus 44 ~~a~~~~~~~~~~~Iy~lG~LIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~el-~~g~~VIIrAHGv~~~~~~~l~------ 116 (380)
.+|...++. +-+|+.+. .|+...++|.+.|+....+ +.++ ..-|.|| -+=..+..+.+.+.
T Consensus 23 ~~A~~l~~~--G~~V~~~d---r~~~~~~~~~~~g~~~~~~------~~e~~~~aDvVi-~~vp~~~~~~~v~~~~~l~~ 90 (306)
T 3l6d_A 23 IMAQVLLKQ--GKRVAIWN---RSPGKAAALVAAGAHLCES------VKAALSASPATI-FVLLDNHATHEVLGMPGVAR 90 (306)
T ss_dssp HHHHHHHHT--TCCEEEEC---SSHHHHHHHHHHTCEECSS------HHHHHHHSSEEE-ECCSSHHHHHHHHTSTTHHH
T ss_pred HHHHHHHHC--CCEEEEEe---CCHHHHHHHHHCCCeecCC------HHHHHhcCCEEE-EEeCCHHHHHHHhcccchhh
Confidence 455555553 34677663 6888999999999987653 2333 3346444 44333333444332
Q ss_pred -hcCCcEEeccCchhHHHHHHHHHHhhCCCeEE
Q 016960 117 -NKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSI 148 (380)
Q Consensus 117 -~~g~~viDaTCP~V~kv~~~v~~~~~~Gy~iI 148 (380)
..|-.|||.+=-.....+...+.+.+.|-..+
T Consensus 91 ~~~g~ivid~st~~~~~~~~l~~~~~~~g~~~v 123 (306)
T 3l6d_A 91 ALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYV 123 (306)
T ss_dssp HTTTCEEEECCCCCTTHHHHHHHHHHHTTCEEE
T ss_pred ccCCCEEEECCCCCHHHHHHHHHHHHHcCCeEE
Confidence 36788999877666677777777777776543
No 221
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=21.39 E-value=3.8e+02 Score=22.84 Aligned_cols=92 Identities=13% Similarity=0.067 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhCCCCceEEecccccCHHHHH-----HHHHcCcEEecCCccccccccccCCCEE-EEcCCCCCHH---
Q 016960 40 ERAVQIAYEARKQFPEEKIWITNEIIHNPTVNK-----RLEEMAVQNIPVEEGKKQFDVVNKGDVV-VLPAFGAAVE--- 110 (380)
Q Consensus 40 ~RAI~~a~~~~~~~~~~~Iy~lG~LIHN~~Vv~-----~L~~~Gv~~v~~~~~~~~~~el~~g~~V-IIrAHGv~~~--- 110 (380)
...++.+-+.+.+ .++||++| +-....+. +|...|..+.--.+... ..+.++|.| +|+.-|-+++
T Consensus 34 ~~~l~~~~~~i~~--a~~I~i~G--~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~--~~~~~~DvvI~iS~SG~t~~~i~ 107 (200)
T 1vim_A 34 LETVGEMIKLIDS--ARSIFVIG--AGRSGYIAKAFAMRLMHLGYTVYVVGETVT--PRITDQDVLVGISGSGETTSVVN 107 (200)
T ss_dssp HHHHHHHHHHHHH--SSCEEEEC--SHHHHHHHHHHHHHHHHTTCCEEETTSTTC--CCCCTTCEEEEECSSSCCHHHHH
T ss_pred HHHHHHHHHHHhc--CCEEEEEE--ecHHHHHHHHHHHHHHhcCCeEEEeCCccc--cCCCCCCEEEEEeCCCCcHHHHH
Q ss_pred HHHHHHhcCCcEEeccCchhHHHHHHH
Q 016960 111 EMVTLNNKNVQIVDTTCPWVSKVWTSV 137 (380)
Q Consensus 111 ~~~~l~~~g~~viDaTCP~V~kv~~~v 137 (380)
..+.++++|+.+|=-|+..-..+.+.+
T Consensus 108 ~~~~ak~~g~~vI~IT~~~~s~La~~a 134 (200)
T 1vim_A 108 ISKKAKDIGSKLVAVTGKRDSSLAKMA 134 (200)
T ss_dssp HHHHHHHHTCEEEEEESCTTSHHHHHC
T ss_pred HHHHHHHCCCeEEEEECCCCChHHHhC
No 222
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=21.26 E-value=1.7e+02 Score=28.08 Aligned_cols=59 Identities=12% Similarity=0.126 Sum_probs=38.8
Q ss_pred CCEEEEcCCCCCHHHHHHHHhcCCcEEec-cCch------hHHHHHHHHHHh-hCCCeEEEEecCCCc
Q 016960 97 GDVVVLPAFGAAVEEMVTLNNKNVQIVDT-TCPW------VSKVWTSVEKHK-KGDYTSIIHGKYSHE 156 (380)
Q Consensus 97 g~~VIIrAHGv~~~~~~~l~~~g~~viDa-TCP~------V~kv~~~v~~~~-~~Gy~iIIiG~~~Hp 156 (380)
.|.++||.+.- ..+.+.++..++.||.| ++-. -.-+..+-+.+. -+|-+|.++||-.|-
T Consensus 97 ~D~iviR~~~~-~~~~~lA~~~~vPVINag~g~~~HPtQ~LaDl~Ti~e~~g~l~glkva~vGD~~~~ 163 (306)
T 4ekn_B 97 ADIIVLRHPSE-GAARLASEYSQVPIINAGDGSNQHPTQTLLDLYTIMREIGRIDGIKIAFVGDLKYG 163 (306)
T ss_dssp CSEEEEECSST-THHHHHHHHCSSCEEESCSSSSCCHHHHHHHHHHHHHHHSCSTTCEEEEESCTTTC
T ss_pred CcEEEEEcCCh-HHHHHHHHhCCCCEEeCCCCCCcCcHHHHHHHHHHHHHhCCcCCCEEEEEcCCCCC
Confidence 47899996643 34555666788999999 4432 223333334443 379999999998763
No 223
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=21.17 E-value=1.4e+02 Score=29.98 Aligned_cols=61 Identities=16% Similarity=0.202 Sum_probs=39.1
Q ss_pred CceEEecccccCHHHHHHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCH--HHHHHHHhcCCcEE
Q 016960 56 EKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV--EEMVTLNNKNVQIV 123 (380)
Q Consensus 56 ~~Iy~lG~LIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~el~~g~~VIIrAHGv~~--~~~~~l~~~g~~vi 123 (380)
-.|+.. +.--++ ..+.|++.|+.+...- +.+.+..-| +||-+=|+++ ..+..++++|+.|+
T Consensus 47 ~~V~~~-D~~~~~-~~~~l~~~gi~~~~g~----~~~~~~~~d-~vV~Spgi~~~~p~~~~a~~~gi~v~ 109 (494)
T 4hv4_A 47 YQISGS-DLAPNS-VTQHLTALGAQIYFHH----RPENVLDAS-VVVVSTAISADNPEIVAAREARIPVI 109 (494)
T ss_dssp CEEEEE-CSSCCH-HHHHHHHTTCEEESSC----CGGGGTTCS-EEEECTTSCTTCHHHHHHHHTTCCEE
T ss_pred CeEEEE-ECCCCH-HHHHHHHCCCEEECCC----CHHHcCCCC-EEEECCCCCCCCHHHHHHHHCCCCEE
Confidence 345543 443344 5678999999987542 123343345 5555668987 46778889999886
No 224
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=20.45 E-value=1e+02 Score=30.44 Aligned_cols=123 Identities=11% Similarity=0.046 Sum_probs=67.8
Q ss_pred ecceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccc-cCHHHHHHHHHcCcEEecCCccccccccccCC-CE
Q 016960 22 WGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEII-HNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKG-DV 99 (380)
Q Consensus 22 ~g~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Iy~lG~LI-HN~~Vv~~L~~~Gv~~v~~~~~~~~~~el~~g-~~ 99 (380)
+.+++|.+..--| .|. | .|.-+.+. +-.|+..-.=. ..+...+.|++.|+.+..... .+++.++ .-
T Consensus 7 ~~~k~v~viG~G~--sG~--s--~A~~l~~~--G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~----~~~~~~~~~d 74 (451)
T 3lk7_A 7 FENKKVLVLGLAR--SGE--A--AARLLAKL--GAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSH----PLELLDEDFC 74 (451)
T ss_dssp TTTCEEEEECCTT--THH--H--HHHHHHHT--TCEEEEEESSCGGGCHHHHHHHHTTCEEEESCC----CGGGGGSCEE
T ss_pred cCCCEEEEEeeCH--HHH--H--HHHHHHhC--CCEEEEEeCCcccCChHHHHHHhCCCEEEECCC----hHHhhcCCCC
Confidence 3456776653322 232 2 25444443 34555542211 124466899999999875421 1223223 23
Q ss_pred EEEcCCCCCHH--HHHHHHhcCCcEEec--------cCchh---------HHHHHHHHHHhhCCCeEEEEecCCCc
Q 016960 100 VVLPAFGAAVE--EMVTLNNKNVQIVDT--------TCPWV---------SKVWTSVEKHKKGDYTSIIHGKYSHE 156 (380)
Q Consensus 100 VIIrAHGv~~~--~~~~l~~~g~~viDa--------TCP~V---------~kv~~~v~~~~~~Gy~iIIiG~~~Hp 156 (380)
+||-+=|+++. ..+.++++|+.|+.- ..|.+ +-..-.+.-+...|+.+.+.|+-+-|
T Consensus 75 ~vv~spgi~~~~p~~~~a~~~gi~v~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~~Gnig~~ 150 (451)
T 3lk7_A 75 YMIKNPGIPYNNPMVKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAGNIGFP 150 (451)
T ss_dssp EEEECTTSCTTSHHHHHHHHTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHTTCCEEEEETSSSC
T ss_pred EEEECCcCCCCChhHHHHHHCCCcEEeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCCEEEeeecChh
Confidence 66667789764 567888999988621 12332 22333344466678888888876544
No 225
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.23 E-value=3.2e+02 Score=22.25 Aligned_cols=62 Identities=11% Similarity=0.006 Sum_probs=41.3
Q ss_pred CCceEEeccccc-CHHHH-HHHHHcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEec
Q 016960 55 EEKIWITNEIIH-NPTVN-KRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDT 125 (380)
Q Consensus 55 ~~~Iy~lG~LIH-N~~Vv-~~L~~~Gv~~v~~~~~~~~~~el~~g~~VIIrAHGv~~~~~~~l~~~g~~viDa 125 (380)
++.+...|.|-+ ++..+ +.+++.|-++....+. .=+.||.-.. ..+.-++.|++.|+.|||-
T Consensus 25 G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sVSk--------kTd~LV~G~~-~g~sKl~KA~~lgI~IisE 88 (112)
T 2ebu_A 25 GLIFVITGVLESIERDEAKSLIERYGGKVTGNVSK--------KTNYLVMGRD-SGQSKSDKAAALGTKIIDE 88 (112)
T ss_dssp TCEEEECSCCSSSCHHHHHHHHHHTTCEECSSCCS--------SCCEEEECSS-CCSHHHHHHHHHTCEEEEH
T ss_pred CCEEEEeeeCCCCCHHHHHHHHHHcCCEEeccccC--------CeeEEEecCC-CChHHHHHHHHcCCeEEeH
Confidence 567888899854 55444 5568889998865321 1245555543 3346678899999999974
No 226
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=20.21 E-value=73 Score=30.83 Aligned_cols=41 Identities=24% Similarity=0.381 Sum_probs=29.5
Q ss_pred HhHHHHHHhhhhcCCEEEEEccCCCchhH-HHHHHHHHhCCCeEee
Q 016960 269 ERQDAMYKMVEEKVDLILVVGGWNSSNTS-HLQEIAEDRGIPSYWI 313 (380)
Q Consensus 269 ~RQ~a~~eLa~~~vD~miVVGG~nSSNT~-kL~eia~~~~~~t~~I 313 (380)
.|+++++.|-+..+|.++||||-.|-.+- +|. +.+.+...|
T Consensus 82 ~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~----~~~i~vvgi 123 (320)
T 1pfk_A 82 IRAVAIENLKKRGIDALVVIGGDGSYMGAMRLT----EMGFPCIGL 123 (320)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHH----HTTCCEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEECCCchHHHHHHHH----hhCCCEEEE
Confidence 56777777765689999999999986554 443 346666655
No 227
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=20.08 E-value=30 Score=31.89 Aligned_cols=62 Identities=10% Similarity=0.080 Sum_probs=39.2
Q ss_pred ccccccccccccHHHHHhHHHHHHhhhhcCCEEEEEccCCCchhHHHHHHHHHhC-CCeEeeCCCCcc
Q 016960 253 VNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRG-IPSYWIDSEKRI 319 (380)
Q Consensus 253 ~~~~~~~~nTIC~AT~~RQ~a~~eLa~~~vD~miVVGG~nSSNT~kL~eia~~~~-~~t~~Ie~~~dL 319 (380)
..-++.++||-+..+. ++.+++ .+-.+.+|||...|+++..+.....+.+ ++...-.+.+.+
T Consensus 33 ~~i~l~~~D~~~~~~~----aa~~~~-~~~~v~~iiGp~~s~~~~a~~~~~~~~~~v~~~~~~~~~~~ 95 (327)
T 3ckm_A 33 STIPVQVFDTSMNSVQ----DIIAQA-KQAGIKTLVGPLLKQNLDVILADPAQIQGMDVLALNATPNS 95 (327)
T ss_dssp CCSCEEEEETTTSCHH----HHHHHH-HHTTCCEEECCCSHHHHHHHHHCGGGGTTCEEEESCCCTTC
T ss_pred CCceEEEEeCCCCHHH----HHHHHH-HHcCCeEEEEccccccchhhHHHHHhccCceEeccCcCccc
Confidence 3456888999887642 344444 2445667899999999998877665544 444333333333
Done!