BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016961
(380 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LWD|A Chain A, Crystal Structure Of Nadp-Dependent Isocitrate
Dehydrogenase From Porcine Heart Mitochondria
pdb|1LWD|B Chain B, Crystal Structure Of Nadp-Dependent Isocitrate
Dehydrogenase From Porcine Heart Mitochondria
Length = 413
Score = 424 bits (1091), Expect = e-119, Method: Compositional matrix adjust.
Identities = 188/281 (66%), Positives = 231/281 (82%)
Query: 81 RVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAE 140
R+KV P+VEMDGDEMTRIIWQ IK+KLI P++D+ +KY+DLG+ NRD T+D+VT++SA
Sbjct: 4 RIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSAL 63
Query: 141 ATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVP 200
AT KY+VA+KCATITPDE R++EF LK MW+SPNGTIRNIL GTVFREPI+C+NIPR+VP
Sbjct: 64 ATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVP 123
Query: 201 GWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMY 260
GW KPI IGRHA GDQY+ATD V+ G K+VF P+DG+ + +VYNF G+ + MY
Sbjct: 124 GWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPAGGVGMGMY 183
Query: 261 NVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHS 320
N DESI FA S A KKWPLY+STKNTILK YDGRFKDIFQ+++E+ ++ F+++
Sbjct: 184 NTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKYK 243
Query: 321 IWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQG 361
IWYEHRLIDDMVA +KS GG+VWACKNYDGDVQSD+LAQG
Sbjct: 244 IWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQG 284
>pdb|1T09|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex Nadp
pdb|1T09|B Chain B, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex Nadp
pdb|1T0L|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex With Nadp,
Isocitrate, And Calcium(2+)
pdb|1T0L|B Chain B, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex With Nadp,
Isocitrate, And Calcium(2+)
pdb|1T0L|C Chain C, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex With Nadp,
Isocitrate, And Calcium(2+)
pdb|1T0L|D Chain D, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex With Nadp,
Isocitrate, And Calcium(2+)
Length = 414
Score = 420 bits (1079), Expect = e-118, Method: Compositional matrix adjust.
Identities = 196/311 (63%), Positives = 242/311 (77%), Gaps = 18/311 (5%)
Query: 88 IVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNV 147
+VEM GDEMTRIIW++IK+KLIFPY++LD+ YDLGI NRDAT+D+VT ++AEA K+NV
Sbjct: 10 VVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKHNV 69
Query: 148 AIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPIC 207
+KCATITPDE R++EF LK MW+SPNGTIRNIL GTVFRE I+C+NIPR+V GW KPI
Sbjct: 70 GVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPII 129
Query: 208 IGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNF-KGPGIALAMYNVDESI 266
IGRHA+GDQYRATD V+ GPGK+++ + P DGT V V+NF +G G+A+ MYN D+SI
Sbjct: 130 IGRHAYGDQYRATDFVVPGPGKVEITYTPSDGTQKVTYLVHNFEEGGGVAMGMYNQDKSI 189
Query: 267 RAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHR 326
FA SS +A SK WPLYLSTKNTILKKYDGRFKDIFQ++Y+++++ +FE IWYEHR
Sbjct: 190 EDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHR 249
Query: 327 LIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQG-----------------TVSAHSSA 369
LIDDMVA A+KSEGG++WACKNYDGDVQSD +AQG TV A ++
Sbjct: 250 LIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAH 309
Query: 370 FEVSRAPNFYQ 380
V+R YQ
Sbjct: 310 GTVTRHYRMYQ 320
>pdb|3MAS|B Chain B, Crystal Structure Of Heterodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp And Isocitrate
Length = 419
Score = 420 bits (1079), Expect = e-118, Method: Compositional matrix adjust.
Identities = 196/311 (63%), Positives = 242/311 (77%), Gaps = 18/311 (5%)
Query: 88 IVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNV 147
+VEM GDEMTRIIW++IK+KLIFPY++LD+ YDLGI NRDAT+D+VT ++AEA K+NV
Sbjct: 15 VVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKHNV 74
Query: 148 AIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPIC 207
+KCATITPDE R++EF LK MW+SPNGTIRNIL GTVFRE I+C+NIPR+V GW KPI
Sbjct: 75 GVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPII 134
Query: 208 IGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNF-KGPGIALAMYNVDESI 266
IGRHA+GDQYRATD V+ GPGK+++ + P DGT V V+NF +G G+A+ MYN D+SI
Sbjct: 135 IGRHAYGDQYRATDFVVPGPGKVEITYTPSDGTQKVTYLVHNFEEGGGVAMGMYNQDKSI 194
Query: 267 RAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHR 326
FA SS +A SK WPLYLSTKNTILKKYDGRFKDIFQ++Y+++++ +FE IWYEHR
Sbjct: 195 EDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHR 254
Query: 327 LIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQG-----------------TVSAHSSA 369
LIDDMVA A+KSEGG++WACKNYDGDVQSD +AQG TV A ++
Sbjct: 255 LIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAH 314
Query: 370 FEVSRAPNFYQ 380
V+R YQ
Sbjct: 315 GTVTRHYRMYQ 325
>pdb|3INM|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase R132h Mutant In Complex With
Nadph, Alpha-Ketoglutarate And Calcium(2+)
pdb|3INM|B Chain B, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase R132h Mutant In Complex With
Nadph, Alpha-Ketoglutarate And Calcium(2+)
pdb|3INM|C Chain C, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase R132h Mutant In Complex With
Nadph, Alpha-Ketoglutarate And Calcium(2+)
Length = 425
Score = 418 bits (1075), Expect = e-117, Method: Compositional matrix adjust.
Identities = 195/311 (62%), Positives = 241/311 (77%), Gaps = 18/311 (5%)
Query: 88 IVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNV 147
+VEM GDEMTRIIW++IK+KLIFPY++LD+ YDLGI NRDAT+D+VT ++AEA K+NV
Sbjct: 10 VVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKHNV 69
Query: 148 AIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPIC 207
+KCATITPDE R++EF LK MW+SPNGTIRNIL GTVFRE I+C+NIPR+V GW KPI
Sbjct: 70 GVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPII 129
Query: 208 IGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNF-KGPGIALAMYNVDESI 266
IG HA+GDQYRATD V+ GPGK+++ + P DGT V V+NF +G G+A+ MYN D+SI
Sbjct: 130 IGHHAYGDQYRATDFVVPGPGKVEITYTPSDGTQKVTYLVHNFEEGGGVAMGMYNQDKSI 189
Query: 267 RAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHR 326
FA SS +A SK WPLYLSTKNTILKKYDGRFKDIFQ++Y+++++ +FE IWYEHR
Sbjct: 190 EDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHR 249
Query: 327 LIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQG-----------------TVSAHSSA 369
LIDDMVA A+KSEGG++WACKNYDGDVQSD +AQG TV A ++
Sbjct: 250 LIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAH 309
Query: 370 FEVSRAPNFYQ 380
V+R YQ
Sbjct: 310 GTVTRHYRMYQ 320
>pdb|3MAP|A Chain A, Crystal Structure Of Homodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp And Isocitrate
pdb|3MAP|B Chain B, Crystal Structure Of Homodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp And Isocitrate
pdb|3MAR|A Chain A, Crystal Structure Of Homodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp
pdb|3MAR|B Chain B, Crystal Structure Of Homodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp
pdb|3MAS|A Chain A, Crystal Structure Of Heterodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp And Isocitrate
Length = 422
Score = 418 bits (1074), Expect = e-117, Method: Compositional matrix adjust.
Identities = 195/311 (62%), Positives = 241/311 (77%), Gaps = 18/311 (5%)
Query: 88 IVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNV 147
+VEM GDEMTRIIW++IK+KLIFPY++LD+ YDLGI NRDAT+D+VT ++AEA K+NV
Sbjct: 10 VVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKHNV 69
Query: 148 AIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPIC 207
+KCATITPDE R++EF LK MW+SPNGTIRNIL GTVFRE I+C+NIPR+V GW KPI
Sbjct: 70 GVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPII 129
Query: 208 IGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNF-KGPGIALAMYNVDESI 266
IG HA+GDQYRATD V+ GPGK+++ + P DGT V V+NF +G G+A+ MYN D+SI
Sbjct: 130 IGHHAYGDQYRATDFVVPGPGKVEITYTPSDGTQKVTYLVHNFEEGGGVAMGMYNQDKSI 189
Query: 267 RAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHR 326
FA SS +A SK WPLYLSTKNTILKKYDGRFKDIFQ++Y+++++ +FE IWYEHR
Sbjct: 190 EDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHR 249
Query: 327 LIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQG-----------------TVSAHSSA 369
LIDDMVA A+KSEGG++WACKNYDGDVQSD +AQG TV A ++
Sbjct: 250 LIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAH 309
Query: 370 FEVSRAPNFYQ 380
V+R YQ
Sbjct: 310 GTVTRHYRMYQ 320
>pdb|2CMJ|A Chain A, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase
pdb|2CMJ|B Chain B, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase
pdb|2CMV|A Chain A, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase Complexed With Cadmium And Citrate
pdb|2CMV|B Chain B, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase Complexed With Cadmium And Citrate
Length = 410
Score = 414 bits (1063), Expect = e-116, Method: Compositional matrix adjust.
Identities = 196/317 (61%), Positives = 245/317 (77%), Gaps = 19/317 (5%)
Query: 83 KVQN-PIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEA 141
K+Q +VEM GDEMTRIIW++IK+KLI PY++LD+ YDLGI NRDAT+D+VT ++AEA
Sbjct: 1 KIQGGSVVEMQGDEMTRIIWELIKEKLILPYVELDLHSYDLGIENRDATNDQVTKDAAEA 60
Query: 142 TLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPG 201
KYNV +KCATITPDE R++EF LK MW+SPNGTIRNIL GTVFRE I+C+NIPR+V G
Sbjct: 61 IKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVTG 120
Query: 202 WKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNF-KGPGIALAMY 260
W KPI IGRHA+GDQYRATD V+ GPGK+++ + P+DGT V V++F +G G+A+ MY
Sbjct: 121 WVKPIIIGRHAYGDQYRATDFVVPGPGKVEITYTPKDGTQKVTYMVHDFEEGGGVAMGMY 180
Query: 261 NVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHS 320
N D+SI FA SS +A SK WPLYLSTKNTILKKYDGRFKDIFQ++Y+++++ +FE +
Sbjct: 181 NQDKSIEDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKKYKSQFEAQN 240
Query: 321 IWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQG-----------------TV 363
I YEHRLIDDMVA A+KSEGG++WACKNYDGDVQSD +AQG TV
Sbjct: 241 ICYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLICPDGKTV 300
Query: 364 SAHSSAFEVSRAPNFYQ 380
A ++ V+R YQ
Sbjct: 301 EAEAAHGTVTRHYRMYQ 317
>pdb|2QFV|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFW|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFX|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFY|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
Length = 427
Score = 411 bits (1056), Expect = e-115, Method: Compositional matrix adjust.
Identities = 191/283 (67%), Positives = 228/283 (80%), Gaps = 2/283 (0%)
Query: 81 RVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAE 140
++KV+ P+VE+DGDEMTRIIW IK KLI PYLD+D+KYYDL + +RDAT DK+T ++AE
Sbjct: 18 KIKVKQPVVELDGDEMTRIIWDKIKKKLILPYLDVDLKYYDLSVESRDATSDKITQDAAE 77
Query: 141 ATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVP 200
A KY V IKCATITPDE R+KEF L MW+SPNGTIRNIL GTVFREPI+ IPR+VP
Sbjct: 78 AIKKYGVGIKCATITPDEARVKEFNLHKMWKSPNGTIRNILGGTVFREPIVIPRIPRLVP 137
Query: 201 GWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTG--PVELDVYNFKGPGIALA 258
W+KPI IGRHA GDQY+ATDT+I GPG L++V+ P D T P L VY++KG G+A+A
Sbjct: 138 RWEKPIIIGRHAHGDQYKATDTLIPGPGSLELVYKPSDPTTAQPQTLKVYDYKGSGVAMA 197
Query: 259 MYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEE 318
MYN DESI FA SS LA KK L+LSTKNTILKKYDGRFKDIFQ+VYE +++ KFE+
Sbjct: 198 MYNTDESIEGFAHSSFKLAIDKKLNLFLSTKNTILKKYDGRFKDIFQEVYEAQYKSKFEQ 257
Query: 319 HSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQG 361
I YEHRLIDDMVA IKS+GG++ A KNYDGDVQSD++AQG
Sbjct: 258 LGIHYEHRLIDDMVAQMIKSKGGFIMALKNYDGDVQSDIVAQG 300
>pdb|3US8|A Chain A, Crystal Structure Of An Isocitrate Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|3US8|B Chain B, Crystal Structure Of An Isocitrate Dehydrogenase From
Sinorhizobium Meliloti 1021
Length = 427
Score = 407 bits (1046), Expect = e-114, Method: Compositional matrix adjust.
Identities = 185/281 (65%), Positives = 226/281 (80%), Gaps = 1/281 (0%)
Query: 81 RVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAE 140
++KV NP+VE+DGDE TRIIWQ IKDKLI PYLDLD++YYDLG+ NRDATDD+VT+++A
Sbjct: 26 KIKVANPVVELDGDEXTRIIWQFIKDKLIHPYLDLDLEYYDLGVENRDATDDQVTIDAAN 85
Query: 141 ATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVP 200
A K+ V +KCATITPDE R++EF LK W+SPNGTIRNIL G +FREPI+C+N+PR+VP
Sbjct: 86 AIKKHGVGVKCATITPDEGRVEEFKLKKXWKSPNGTIRNILGGVIFREPIICKNVPRLVP 145
Query: 201 GWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMY 260
GW KPI +GRHAFGDQYRATD G GKL + F EDG +E DVY+ G G+ALA Y
Sbjct: 146 GWTKPIIVGRHAFGDQYRATDFKFPGKGKLSIKFVGEDGQ-TIEHDVYDAPGAGVALAXY 204
Query: 261 NVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHS 320
N+DESI FA +S + +K P+YLSTKNTILK YDGRFKDIFQ+V++E + +F+
Sbjct: 205 NLDESITEFARASFNYGLQRKVPVYLSTKNTILKAYDGRFKDIFQKVFDEEFAAQFKAEK 264
Query: 321 IWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQG 361
+WYEHRLIDD VA A+K GGYVWACKNYDGDVQSD++AQG
Sbjct: 265 LWYEHRLIDDXVASALKWSGGYVWACKNYDGDVQSDIVAQG 305
>pdb|4HCX|A Chain A, Structure Of Icdh-1 From M.tuberculosis Complexed With
Nadph & Mn2+
pdb|4HCX|B Chain B, Structure Of Icdh-1 From M.tuberculosis Complexed With
Nadph & Mn2+
Length = 409
Score = 389 bits (998), Expect = e-108, Method: Compositional matrix adjust.
Identities = 176/282 (62%), Positives = 220/282 (78%), Gaps = 1/282 (0%)
Query: 81 RVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAE 140
++KV P+VE+DGDEMTR+IW++IKD LI PYLD+ + YYDLGI +RDATDD+VT+++A
Sbjct: 6 KIKVSGPVVELDGDEMTRVIWKLIKDMLILPYLDIRLDYYDLGIEHRDATDDQVTIDAAY 65
Query: 141 ATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVP 200
A K+ V +KCATITPDE R++EF LK MW SPNGTIRNIL GT+FREPI+ N+PR+VP
Sbjct: 66 AIKKHGVGVKCATITPDEARVEEFNLKKMWLSPNGTIRNILGGTIFREPIVISNVPRLVP 125
Query: 201 GWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNF-KGPGIALAM 259
GW KPI IGRHAFGDQYRAT+ + PG + + F P DG+ P+ ++ + + G+ L M
Sbjct: 126 GWTKPIVIGRHAFGDQYRATNFKVDQPGTVTLTFTPADGSAPIVHEMVSIPEDGGVVLGM 185
Query: 260 YNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEH 319
YN ESIR FA +S S + KWP+YLSTKNTILK YDG FKD F++VYEE ++ +FE
Sbjct: 186 YNFKESIRDFARASFSYGLNAKWPVYLSTKNTILKAYDGMFKDEFERVYEEEFKAQFEAA 245
Query: 320 SIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQG 361
+ YEHRLIDDMVA +K EGGYVWACKNYDGDVQSD +AQG
Sbjct: 246 GLTYEHRLIDDMVAACLKWEGGYVWACKNYDGDVQSDTVAQG 287
>pdb|4AOY|A Chain A, Open Ctidh. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
pdb|4AOY|B Chain B, Open Ctidh. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
pdb|4AOY|C Chain C, Open Ctidh. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
pdb|4AOY|D Chain D, Open Ctidh. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
pdb|4AOU|A Chain A, Ctidh Bound To Nadp. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
Length = 402
Score = 327 bits (837), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 150/294 (51%), Positives = 213/294 (72%), Gaps = 3/294 (1%)
Query: 79 IDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVES 138
+ ++K++ P+VEMDGDEMTRIIW++IK+ L+ PY++L+ +YYDLG+ NRD T+D+VT+++
Sbjct: 1 MSKIKMKVPLVEMDGDEMTRIIWRLIKENLLEPYIELNTEYYDLGLENRDKTEDQVTIDA 60
Query: 139 AEATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRI 198
A A KY V +KCATITP+ R++E+ LK MW+SPNGTIR IL+GTVFR PI+ +I
Sbjct: 61 ARAIQKYGVGVKCATITPNAQRVEEYNLKKMWKSPNGTIRAILDGTVFRAPIVVNSIKPF 120
Query: 199 VPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALA 258
V GWKKPI I RHA+GD Y+ + + GK ++VF E+G + ++ F GPG+ +
Sbjct: 121 VKGWKKPISIARHAYGDVYKNVEYYVPSAGKAELVFTSENGEVSRQT-IHEFDGPGVIMG 179
Query: 259 MYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEE 318
M+N D+SIR+FA + + A L+ STK+TI K YD RFKDIFQ++YE +++KFE
Sbjct: 180 MHNTDKSIRSFARACFNYALDMNQDLWFSTKDTISKTYDHRFKDIFQEIYENEYKEKFEA 239
Query: 319 HSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQ--GTVSAHSSAF 370
++ Y + LIDD VA I+SEGG VWACKNYDGDV SD++A G+++ +S
Sbjct: 240 KNLQYFYTLIDDAVARIIRSEGGMVWACKNYDGDVMSDMVASAFGSLAMMTSVL 293
>pdb|1ZOR|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile
Thermotoga Maritima
pdb|1ZOR|B Chain B, Isocitrate Dehydrogenase From The Hyperthermophile
Thermotoga Maritima
Length = 399
Score = 314 bits (805), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 144/284 (50%), Positives = 214/284 (75%), Gaps = 6/284 (2%)
Query: 79 IDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVES 138
+++VKV+NPIVE+DGDEM R++W+MIK+KLI PYLD+ + Y+DLGI RD TDD++T+E+
Sbjct: 1 MEKVKVKNPIVELDGDEMARVMWKMIKEKLILPYLDIQLVYFDLGIKKRDETDDQITIEA 60
Query: 139 AEATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRI 198
A+A KY V +KCATITPD R+KE+ LK W+SPN TIR L+GTVFR+PI+ +N+P +
Sbjct: 61 AKAIKKYGVGVKCATITPDAERVKEYNLKKAWKSPNATIRAYLDGTVFRKPIMVKNVPPL 120
Query: 199 VPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVF-DPEDGTGPVELDVYNFKGPGIAL 257
V WKKPI IGRHA+GD Y A + ++GP ++++V + E+ T L V+ F+G G+ +
Sbjct: 121 VKRWKKPIIIGRHAYGDIYNAVEAKVEGPAEVELVVRNKENKT----LLVHKFEGNGVVM 176
Query: 258 AMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFE 317
AM+N+++SIR+FA+S ++ A S+K ++ +TK+TI K Y FKDIFQ+ ++R +++ E
Sbjct: 177 AMHNLEKSIRSFAQSCINYAISEKVDIWFATKDTISKVYHAYFKDIFQEEVDKR-KEELE 235
Query: 318 EHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQG 361
+ + Y + LIDD A ++SEGG +WAC NY+GD+ SD++A G
Sbjct: 236 KAGVNYRYMLIDDAAAQILRSEGGMLWACMNYEGDIMSDMIASG 279
>pdb|2UXQ|A Chain A, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXQ|B Chain B, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXQ|C Chain C, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXQ|D Chain D, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXR|A Chain A, Complex With Isocitrate And The Protein Isocitrate
Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila
pdb|2UXR|B Chain B, Complex With Isocitrate And The Protein Isocitrate
Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila
pdb|4AOV|A Chain A, Dpidh-Nadp. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
Length = 402
Score = 283 bits (723), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 130/292 (44%), Positives = 201/292 (68%), Gaps = 3/292 (1%)
Query: 81 RVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAE 140
+++++ P+VE+DGDEMTR++W +IKDKL+ P++DL +YYDLGI RD T+D++T+++AE
Sbjct: 2 KIQMKTPLVELDGDEMTRVLWPLIKDKLLLPFIDLQTEYYDLGIEERDRTNDQITIDAAE 61
Query: 141 ATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVP 200
A KY V +K ATITP++ R++E+GLK W+SPN T+R +L+GTVFR+PI+ +NI V
Sbjct: 62 AIKKYGVGVKNATITPNQDRVEEYGLKEQWKSPNATVRAMLDGTVFRKPIMVKNIKPSVR 121
Query: 201 GWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMY 260
W+KPI +GRHA+GD Y+ + + GKL++V ++G + P I ++
Sbjct: 122 SWQKPIVVGRHAYGDFYKNAEIFAEAGGKLEIVVTDKNGK-ETRQTIMEVDEPAIVQGIH 180
Query: 261 NVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHS 320
N SI FA + + +K + +TK+TI K+YD RFK IF++++ + +++KF
Sbjct: 181 NTVASIGHFARACFEYSLDQKIDCWFATKDTISKQYDQRFKIIFEEIFAQEYKEKFAAAG 240
Query: 321 IWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQ--GTVSAHSSAF 370
I Y + LIDD+VA +K+EGG +WACKNYDGDV SD++A G+++ SS
Sbjct: 241 IEYFYTLIDDVVARMMKTEGGMLWACKNYDGDVMSDMVASAFGSLAMMSSVL 292
>pdb|1WYR|A Chain A, Solution Structure Of The Ch Domain Of Human Rho Guanine
Nucleotide Exchange Factor 6
Length = 121
Score = 32.7 bits (73), Expect = 0.35, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 172 SPNGTI---RNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPG 228
SP TI L ++ +LC+ I R++PG + C+ D + +KG
Sbjct: 23 SPKKTICDPEEFLKSSLKNGVVLCKLINRLMPGSVEKFCLDPQTEADCINNINDFLKGCA 82
Query: 229 KLKM-VFDPED 238
L++ +FDP+D
Sbjct: 83 TLQVEIFDPDD 93
>pdb|2D1C|A Chain A, Crystal Structure Of Tt0538 Protein From Thermus
Thermophilus Hb8
pdb|2D1C|B Chain B, Crystal Structure Of Tt0538 Protein From Thermus
Thermophilus Hb8
Length = 496
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Query: 284 LYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIK-SEGGY 342
++ +TK+ I+K +G K F+QV +E I H ++D+ +K E
Sbjct: 186 VHCATKSNIMKLAEGTLKRAFEQVAQEY-------PDIEAVHIIVDNAAHQLVKRPEQFE 238
Query: 343 VWACKNYDGDVQSDL 357
V N +GD+ SDL
Sbjct: 239 VIVTTNMNGDILSDL 253
>pdb|2EJX|A Chain A, Crystal Structure Of The Hypothetical Protein St0812 From
Sulfolobus Tokodaii
Length = 139
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 9/65 (13%)
Query: 184 TVFREPILCQNIPRIVPGWKKPICIGRHAFGDQ-------YRATDTVIKGPGKLKMVFDP 236
T+F +P IP+I PG CI F + Y+ V KG ++++++D
Sbjct: 22 TIFSDPAFT--IPQIFPGIASIKCIEPEIFEAEGKFLAFSYKVKGRVYKGVDEVRIIYDS 79
Query: 237 EDGTG 241
+ G G
Sbjct: 80 DRGNG 84
>pdb|2HE3|A Chain A, Crystal Structure Of The Selenocysteine To Cysteine Mutant
Of Human Glutathionine Peroxidase 2 (Gpx2)
Length = 208
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 20/46 (43%)
Query: 119 YYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEF 164
+YDL +N D A L NVA C T T D T++ E
Sbjct: 28 FYDLSAINLDGEKVDFNTFRGRAVLIENVASLCGTTTRDFTQLNEL 73
>pdb|3IF0|X Chain X, Crystal Structure Of The Nanoarchaeum Equitans Trna
Splicing Endonuclease Structural Subunit
pdb|3IEY|B Chain B, Crystal Structure Of The Functional Nanoarchaeum Equitans
Trna Splicing Endonuclease
Length = 153
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 282 WPLYLSTKNTILKKYDGRFKDIFQQVYEE 310
W +Y + K+ IL+ Y RF F ++YE+
Sbjct: 61 WEIYYTVKDLILRGYRVRFDGFFIELYEK 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,444,909
Number of Sequences: 62578
Number of extensions: 494308
Number of successful extensions: 945
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 915
Number of HSP's gapped (non-prelim): 22
length of query: 380
length of database: 14,973,337
effective HSP length: 101
effective length of query: 279
effective length of database: 8,652,959
effective search space: 2414175561
effective search space used: 2414175561
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)