Query 016961
Match_columns 380
No_of_seqs 150 out of 1273
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 04:23:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016961.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016961hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03065 isocitrate dehydrogen 100.0 7.3E-92 1.6E-96 715.7 31.1 356 20-378 13-369 (483)
2 PTZ00435 isocitrate dehydrogen 100.0 6.2E-81 1.3E-85 628.3 28.8 297 80-377 4-300 (413)
3 TIGR00127 nadp_idh_euk isocitr 100.0 2.2E-80 4.7E-85 623.7 28.3 297 80-377 1-298 (409)
4 PLN00096 isocitrate dehydrogen 100.0 3.7E-80 8E-85 616.3 24.9 284 88-377 1-293 (393)
5 PRK08299 isocitrate dehydrogen 100.0 1.7E-79 3.7E-84 616.6 29.1 296 80-377 2-297 (402)
6 COG0473 LeuB Isocitrate/isopro 100.0 3.5E-79 7.7E-84 599.4 24.3 255 84-377 2-263 (348)
7 KOG1526 NADP-dependent isocitr 100.0 4.8E-77 1E-81 572.8 19.0 299 78-377 11-309 (422)
8 PRK08997 isocitrate dehydrogen 100.0 4.5E-76 9.7E-81 582.0 26.3 251 84-377 1-254 (334)
9 PLN00118 isocitrate dehydrogen 100.0 8.4E-76 1.8E-80 586.0 26.4 247 86-377 42-291 (372)
10 PLN00103 isocitrate dehydrogen 100.0 6.4E-75 1.4E-79 584.8 28.5 273 79-377 3-301 (410)
11 TIGR02088 LEU3_arch isopropylm 100.0 9.2E-75 2E-79 570.7 24.9 243 88-377 1-246 (322)
12 PRK03437 3-isopropylmalate deh 100.0 1.2E-74 2.6E-79 574.1 25.5 254 86-377 5-267 (344)
13 PRK14025 multifunctional 3-iso 100.0 4E-74 8.6E-79 567.3 25.6 243 86-377 2-251 (330)
14 PRK08194 tartrate dehydrogenas 100.0 3.9E-74 8.4E-79 571.9 25.4 254 86-377 4-267 (352)
15 PRK07006 isocitrate dehydrogen 100.0 5.8E-74 1.3E-78 579.8 27.0 274 88-377 22-324 (409)
16 TIGR00183 prok_nadp_idh isocit 100.0 7.4E-74 1.6E-78 580.7 26.6 274 88-377 29-331 (416)
17 PRK06451 isocitrate dehydrogen 100.0 7.3E-74 1.6E-78 578.8 25.9 270 88-377 26-324 (412)
18 TIGR02089 TTC tartrate dehydro 100.0 7.8E-74 1.7E-78 570.0 25.1 255 86-377 4-270 (352)
19 TIGR00175 mito_nad_idh isocitr 100.0 1.6E-73 3.4E-78 564.7 25.9 246 86-377 4-252 (333)
20 PLN02329 3-isopropylmalate deh 100.0 1.3E-73 2.9E-78 575.1 24.9 259 84-377 45-316 (409)
21 PLN00123 isocitrate dehydrogen 100.0 3.2E-73 7E-78 564.9 25.7 242 86-377 31-275 (360)
22 PRK09222 isocitrate dehydrogen 100.0 8.6E-73 1.9E-77 578.3 26.4 248 85-377 4-256 (482)
23 TIGR00169 leuB 3-isopropylmala 100.0 9.7E-73 2.1E-77 561.6 25.3 255 87-377 1-268 (349)
24 PRK00772 3-isopropylmalate deh 100.0 9.3E-73 2E-77 563.1 24.3 257 85-377 2-271 (358)
25 TIGR02924 ICDH_alpha isocitrat 100.0 1.8E-72 3.8E-77 574.3 26.3 246 87-377 2-252 (473)
26 PRK07362 isocitrate dehydrogen 100.0 4E-70 8.7E-75 552.7 25.3 274 88-377 31-388 (474)
27 KOG0785 Isocitrate dehydrogena 100.0 2E-69 4.4E-74 520.7 18.8 247 86-377 36-285 (365)
28 PF00180 Iso_dh: Isocitrate/is 100.0 5.8E-70 1.3E-74 542.7 13.5 253 87-377 1-267 (348)
29 COG0538 Icd Isocitrate dehydro 100.0 3.3E-68 7.2E-73 524.5 23.7 274 88-375 21-318 (407)
30 KOG0784 Isocitrate dehydrogena 100.0 1.8E-59 3.8E-64 456.6 19.3 253 79-377 36-291 (375)
31 KOG0786 3-isopropylmalate dehy 100.0 2.8E-55 6.2E-60 414.4 13.3 247 85-375 4-270 (363)
32 TIGR00127 nadp_idh_euk isocitr 88.5 0.25 5.5E-06 51.3 1.9 20 203-222 140-160 (409)
33 PLN00103 isocitrate dehydrogen 77.2 1.2 2.5E-05 46.5 1.4 12 327-338 278-289 (410)
34 TIGR00178 monomer_idh isocitra 64.1 34 0.00074 37.6 8.7 114 210-325 174-295 (741)
35 PF03971 IDH: Monomeric isocit 52.6 18 0.00039 39.7 4.3 114 210-325 170-291 (735)
36 COG0655 WrbA Multimeric flavod 49.1 92 0.002 28.8 8.1 76 94-183 13-100 (207)
37 PTZ00435 isocitrate dehydrogen 46.3 12 0.00026 39.2 1.8 18 203-220 143-161 (413)
38 PRK10569 NAD(P)H-dependent FMN 35.2 1.2E+02 0.0026 28.1 6.5 84 87-184 2-92 (191)
39 PRK03371 pdxA 4-hydroxythreoni 35.0 32 0.00069 35.0 2.8 22 84-105 1-24 (326)
40 TIGR03567 FMN_reduc_SsuE FMN r 30.0 2.5E+02 0.0054 25.0 7.6 81 88-183 2-90 (171)
41 KOG1014 17 beta-hydroxysteroid 28.1 72 0.0016 32.4 3.9 35 271-313 64-98 (312)
42 COG2838 Icd Monomeric isocitra 27.5 1.5E+02 0.0033 32.3 6.3 104 224-330 192-302 (744)
43 PRK00232 pdxA 4-hydroxythreoni 27.3 54 0.0012 33.4 3.0 22 84-105 3-26 (332)
44 PRK02746 pdxA 4-hydroxythreoni 26.8 55 0.0012 33.6 2.9 22 84-105 8-31 (345)
45 PRK05312 pdxA 4-hydroxythreoni 26.3 56 0.0012 33.4 2.9 21 85-105 3-25 (336)
46 PRK03743 pdxA 4-hydroxythreoni 25.5 59 0.0013 33.2 2.9 20 86-105 4-25 (332)
47 PF03358 FMN_red: NADPH-depend 25.1 99 0.0022 26.5 3.9 82 87-184 2-96 (152)
48 PRK03946 pdxA 4-hydroxythreoni 25.0 46 0.001 33.6 2.0 19 86-104 2-22 (307)
49 cd01988 Na_H_Antiporter_C The 24.4 1.1E+02 0.0024 24.7 3.9 27 264-290 10-36 (132)
50 TIGR03249 KdgD 5-dehydro-4-deo 23.3 3.3E+02 0.0071 26.7 7.6 105 259-378 108-217 (296)
51 PF00582 Usp: Universal stress 23.0 85 0.0018 24.9 2.9 26 263-288 12-37 (140)
52 PF12953 DUF3842: Domain of un 22.6 77 0.0017 28.3 2.7 22 87-108 1-24 (131)
53 TIGR03566 FMN_reduc_MsuE FMN r 20.2 5.7E+02 0.012 22.7 8.0 81 87-183 1-93 (174)
54 PRK15005 universal stress prot 20.1 1.4E+02 0.003 24.9 3.8 27 262-288 12-39 (144)
55 PRK01909 pdxA 4-hydroxythreoni 20.0 87 0.0019 32.0 2.8 20 86-105 6-27 (329)
No 1
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=7.3e-92 Score=715.72 Aligned_cols=356 Identities=81% Similarity=1.273 Sum_probs=325.9
Q ss_pred hhhhhhccccccccccCCCcccccCCCCccccccc-cchhhhhccccchhhhhhhccccccccccccccEEEEcCCccHH
Q 016961 20 AAATTKMMSSSTVAVKNPRWSLCSSNNSGLFSGHV-NNRVSFRNQLAPAMSFRCFASATGIDRVKVQNPIVEMDGDEMTR 98 (380)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvvlpGDgIGp 98 (380)
..+...|+++++++..||.++..+.+ +.|++.+ .+..........++.-|++++..+.+||+|++|||+|||||||+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~~~piv~~~GDem~r 90 (483)
T PLN03065 13 RPALALMPSSSSSAAANPLLASNPCR--GIFNGGLSKNRRAFHVQFHRASSVRCFASAAAADRIKVQNPIVEMDGDEMTR 90 (483)
T ss_pred chhhhhcccccchhhcCcccccCchh--hhccccccccccccccccccccchhhhcchhhhccccccCCeEEecCCcchH
Confidence 34556788889999999999988865 4555443 44444444444455667776655568999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcchhhhhcccccCCCCchhHh
Q 016961 99 IIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIR 178 (380)
Q Consensus 99 EV~~~~~~~l~~~g~~i~~~~~d~G~~~~d~tG~~lp~etleaik~~da~lkGa~~tP~~~~~~~~~L~~~~~spn~~LR 178 (380)
|||+.++++|+.++++++|+|+|+|.+++++||+++|+|++++|+++||+||||++||+++|++||+|+++|+|||++||
T Consensus 91 ~i~~~i~~~li~p~~di~~~~~dlG~e~rd~Tgd~v~~da~~aikk~~v~lKgAt~TP~~~rv~e~~lk~~w~SpN~tiR 170 (483)
T PLN03065 91 VIWQMIKDKLIFPYLDLDIKYFDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFGLKSMWRSPNGTIR 170 (483)
T ss_pred HHHHHHHHHHhcCCCCceEEEEeCcHHHHHhhCCcCCHHHHHHHHHcCEEEECcccCCccccccccccccccCCccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCeEEeeecccCCCCCCCCCCCCCEEEEeeccCccccccceeecCCCceeeeecCCCCCCcceeeecccCCcceeee
Q 016961 179 NILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALA 258 (380)
Q Consensus 179 k~ldlyanvRPi~~~~lp~~~~~~~~divIvREnteG~Y~g~e~~~~~~g~~e~~~~~~~g~~~~~~~v~~~~~~~~~~~ 258 (380)
++||||+|+|||.|+++|++.++|+.||+|+|||+||+|.++|+++.++|+++++|++++++...+.++++|.++++.+.
T Consensus 171 ~~Ldl~v~rrPi~~~ni~r~vpg~~~pI~i~Rha~gd~Y~~iD~vi~~~g~~~~~~~rEnte~~~e~~v~~f~~~gva~~ 250 (483)
T PLN03065 171 NILNGTVFREPILCKNIPRLVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFVPEDGNAPVELDVYDFKGPGVALA 250 (483)
T ss_pred HHcCCeEEeeeeeccccCccCCCCCCCeEEeecccCCCcCceEEEEecCCeeEEEeecCCCCCcceeEeeccCCCCeEEE
Confidence 99999999999988999999999999999999999999999999999999999999999887777788899998888888
Q ss_pred cccCHHHHHHHHHHHHHHHhcCCCCEEEEeCCCcccccchhHHHHHHHHHHHhhhcccCCCCeeEehhhHHHHHHHHHHC
Q 016961 259 MYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKS 338 (380)
Q Consensus 259 ~~~Tr~~ieRIar~AFe~A~~rk~~Vt~v~KaNVLk~tdglf~~i~~eVa~~eY~~~~~~p~I~~e~~lIDa~a~~LVk~ 338 (380)
++||+++|+||||+||+||++|+++||++||+||||.|||+|+++|+|||+++||++|.+.+|+|+|+|||+||||||++
T Consensus 251 ~~nT~~sieriAr~AF~yA~~rk~~Vt~v~KaNILK~~DGlF~dif~eVa~~eyk~~yp~~~I~~e~~lIDa~~~~lvk~ 330 (483)
T PLN03065 251 MYNVDESIRAFAESSMAMALQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEQWKQKFEEHSIWYEHRLIDDMVAYAVKS 330 (483)
T ss_pred EEECHHHHHHHHHHHHHHHHHcCCCEEEEeCCCcccchHHHHHHHHHHHHHHhhhhcCCCCCceEEeeeHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999889999996668999999999999999999
Q ss_pred CCCcEEEeCCchhhHHHhhhhhccCCccccCCCCCCCCCC
Q 016961 339 EGGYVWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPNF 378 (380)
Q Consensus 339 P~~FViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~p~~ 378 (380)
|++|||||+|||||||||++||++|||||+ +|+|++|+-
T Consensus 331 P~~FViv~~NlfGDIlSDl~A~l~GsLGl~-pSanig~dg 369 (483)
T PLN03065 331 EGGYVWACKNYDGDVQSDLLAQGFGSLGLM-TSVLLSSDG 369 (483)
T ss_pred CCCcEEEeeccchhhhhHHHHHhcCchhhc-ccceeCCCC
Confidence 999999999999999999999999999999 779999983
No 2
>PTZ00435 isocitrate dehydrogenase; Provisional
Probab=100.00 E-value=6.2e-81 Score=628.32 Aligned_cols=297 Identities=70% Similarity=1.190 Sum_probs=282.9
Q ss_pred ccccccccEEEEcCCccHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcc
Q 016961 80 DRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDET 159 (380)
Q Consensus 80 ~~~~~~~~IvvlpGDgIGpEV~~~~~~~l~~~g~~i~~~~~d~G~~~~d~tG~~lp~etleaik~~da~lkGa~~tP~~~ 159 (380)
.||+|.+|+|.|.||+|.+.+|+.+++.|+.++++|+|+++|+|.+++++||+++|+|++++|+++|++||||++||.++
T Consensus 4 ~~~~~~~~~v~~~~~em~~~~~~~~~~~~~~~~~~i~~~~~d~g~~~~~~tg~~lp~ea~eaik~~~v~LkGa~~TP~~~ 83 (413)
T PTZ00435 4 GKIKVKNPVVELDGDEMTRIIWKMIKEKLILPYLDVPIKYYDLSIENRDKTDDKVTVDAAEAIKKHKVGIKCATITPDEA 83 (413)
T ss_pred ccccccCCeEEecccHHHHHHHHHHHHhhccCCCCceEEEEeCcHHHHHhcCCcCCHHHHHHHHHcCEEEECcccCCccc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred hhhhhcccccCCCCchhHhhhcCCeEEeeecccCCCCCCCCCCCCCEEEEeeccCccccccceeecCCCceeeeecCCCC
Q 016961 160 RMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDG 239 (380)
Q Consensus 160 ~~~~~~L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~~~~~~divIvREnteG~Y~g~e~~~~~~g~~e~~~~~~~g 239 (380)
++++++|+++|+|||++||+.||||+|+|||.++++|++.++|+.||+++||||||.|.++|+++.++++.|+.|.+.+|
T Consensus 84 ~~~~~~l~~~~~S~n~~LR~~ldlyanvRPi~~k~i~~~~pg~~~~i~i~Ren~e~~y~~id~vi~rent~e~~y~~~~g 163 (413)
T PTZ00435 84 RVKEFNLKKMWKSPNGTIRNILDGTVFREPIIIKNIPRLVPGWKKPIVIGRHAFGDQYKATDFVVDGPGKLELVFTPADG 163 (413)
T ss_pred cccccccccccCCchHHHHHHcCCeEEEeeeeccccCccCCCCCCCeeeeccccCCCcCceEEEEecCCEEEEEEecCCC
Confidence 66688899999999999999999999999987799999999999999999999999999999999999988889999988
Q ss_pred CCcceeeecccCCcceeeecccCHHHHHHHHHHHHHHHhcCCCCEEEEeCCCcccccchhHHHHHHHHHHHhhhcccCCC
Q 016961 240 TGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEH 319 (380)
Q Consensus 240 ~~~~~~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk~~Vt~v~KaNVLk~tdglf~~i~~eVa~~eY~~~~~~p 319 (380)
+.+.++++++|..+++++.++|||++|+||+|+||+||++|+++||++||+||||.+||+|+++|+|||+++|.++|..+
T Consensus 164 ~~~~~~~~~~~~~~~v~~~~~~Tr~~~eRIar~AF~~A~~r~~~Vt~v~KaNVlk~~dglf~~~~~eva~~eYpe~~~~~ 243 (413)
T PTZ00435 164 SEPQRVDVFDFKGGGVAMGMYNTDESIEGFARSCFQYALDRKMPLYLSTKNTILKKYDGRFKDIFQEIYDEEYKAKFEKA 243 (413)
T ss_pred CcceeeeeeccCCCCeeEEEEeCHHHHHHHHHHHHHHHHHcCCCEEEECCCCcchhhHHHHHHHHHHHHHHhCccccccC
Confidence 77888899999988888888999999999999999999999989999999999999999999999999976797677777
Q ss_pred CeeEehhhHHHHHHHHHHCCCCcEEEeCCchhhHHHhhhhhccCCccccCCCCCCCCC
Q 016961 320 SIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPN 377 (380)
Q Consensus 320 ~I~~e~~lIDa~a~~LVk~P~~FViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~p~ 377 (380)
+|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+ +|+|++|+
T Consensus 244 ~I~~~~~lVDa~~m~lv~~P~~fViV~~NlfGDIlSDlaA~l~GglGla-pSanig~d 300 (413)
T PTZ00435 244 GLWYEHRLIDDMVAQAIKSEGGFVWACKNYDGDVQSDIVAQGYGSLGLM-TSVLVCPD 300 (413)
T ss_pred CEEEEEeeHHHHHHHHhhCCCCeEEEeecccchhhhHHHHHhcCccccc-ccceeCCC
Confidence 9999999999999999999999999999999999999999999999999 89999987
No 3
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type. This model does not discriminate cytosolic, mitochondrial, and chloroplast proteins. However, the model starts very near the amino end of the cytosolic form; the finding of additional amino-terminal sequence may indicate a transit peptide.
Probab=100.00 E-value=2.2e-80 Score=623.73 Aligned_cols=297 Identities=71% Similarity=1.228 Sum_probs=276.2
Q ss_pred ccccccccEEEEcCCccHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcc
Q 016961 80 DRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDET 159 (380)
Q Consensus 80 ~~~~~~~~IvvlpGDgIGpEV~~~~~~~l~~~g~~i~~~~~d~G~~~~d~tG~~lp~etleaik~~da~lkGa~~tP~~~ 159 (380)
+||||.+|+|+|.||||.+.+|+.+++.|+.++++|+|+++|+|.+++++||+++|+|++++|+++|++||||++||.+.
T Consensus 1 ~~~~~~~p~v~~~g~em~~~~~~~~~~~~~~~~~~i~~~~~d~g~~~~~~tg~~lp~ea~eaik~~dv~LkGa~~TP~~~ 80 (409)
T TIGR00127 1 SKIKVANPVVEMDGDEMTRIIWELIKDKLILPYVELDLKYYDLGVEYRDATNDQVTVDAAEAIKKYNVGVKCATITPDEA 80 (409)
T ss_pred CCccccCCeEEecCcHHHHHHHHHHHHhhccCCcCceEEEEeCcHHHHHhhCCcCCHHHHHHHHHcCEEEECcccCCccc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred hhhhhcccccCCCCchhHhhhcCCeEEeeecccCCCCCCCCCCCCCEEEEeeccCccccccceeecCCCceeeeecCCCC
Q 016961 160 RMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDG 239 (380)
Q Consensus 160 ~~~~~~L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~~~~~~divIvREnteG~Y~g~e~~~~~~g~~e~~~~~~~g 239 (380)
++.++.|+++|+|||++||+.||||+|+|||.++++++..++|..||+|+||||||.|.++|+++.++|+.|+.|.+.++
T Consensus 81 ~~~~~~l~k~~~S~n~~lR~~ldlyanvRPi~~~~~~~~~pg~~~~i~i~R~~~~~~y~~iD~vivREnt~Eg~Y~g~e~ 160 (409)
T TIGR00127 81 RVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWEKPIIIGRHAFGDQYRATDFVVPGPGKLELVYKPKDG 160 (409)
T ss_pred cccccccccccCCccHHHHHHcCCeEEeeeccccccCccCCCCCCCeeeeccccCCCcCceEEEEecCCeeeEEEECCCC
Confidence 66788888999999999999999999999987899998888899999999999999999999999999999999998877
Q ss_pred CCcceeeecccC-CcceeeecccCHHHHHHHHHHHHHHHhcCCCCEEEEeCCCcccccchhHHHHHHHHHHHhhhcccCC
Q 016961 240 TGPVELDVYNFK-GPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEE 318 (380)
Q Consensus 240 ~~~~~~~v~~~~-~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk~~Vt~v~KaNVLk~tdglf~~i~~eVa~~eY~~~~~~ 318 (380)
+.++...+.++. +++++..++||+++|+||||+||+||++|+++||++||+||||.+||+|+++|+|||+++|.++|..
T Consensus 161 ~~~~~~~~~~~~~~~~v~~~~~~T~~~~eRIar~AF~~A~~~~~~Vt~v~KaNVlk~~dglf~~~~~eva~~eYp~~~~~ 240 (409)
T TIGR00127 161 TQKVTLKVYDFEEGGGVAMAMYNTDESIEGFAHSSFQLALEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEAQYKSKFEA 240 (409)
T ss_pred CcccceeeeeccCCCCeEEEEEECHHHHHHHHHHHHHHHHHcCCCEEEEcCcchhhhhhHHHHHHHHHHHHHhCcccccC
Confidence 554444444444 3456667789999999999999999999999999999999999999999999999974489888888
Q ss_pred CCeeEehhhHHHHHHHHHHCCCCcEEEeCCchhhHHHhhhhhccCCccccCCCCCCCCC
Q 016961 319 HSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPN 377 (380)
Q Consensus 319 p~I~~e~~lIDa~a~~LVk~P~~FViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~p~ 377 (380)
|+|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+ +|+|++++
T Consensus 241 ~~I~~~~~lVDa~~m~lv~~P~~fViv~~NlfGDIlSDlaA~l~GslGl~-pSanig~~ 298 (409)
T TIGR00127 241 LGIWYEHRLIDDMVAQALKSEGGFIWACKNYDGDVQSDIVAQGFGSLGLM-TSVLICPD 298 (409)
T ss_pred CCEEEEEeeHHHHHHHHhhCCCCcEEEecccchHHHHHHHHHhcCchhhh-heeeeCCC
Confidence 89999999999999999999999999999999999999999999999999 67999987
No 4
>PLN00096 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=3.7e-80 Score=616.33 Aligned_cols=284 Identities=31% Similarity=0.449 Sum_probs=272.9
Q ss_pred EEEEcCCccHHHHHHHHHHHHhcCCCCeE-EEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcchhhhhcc
Q 016961 88 IVEMDGDEMTRIIWQMIKDKLIFPYLDLD-IKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGL 166 (380)
Q Consensus 88 IvvlpGDgIGpEV~~~~~~~l~~~g~~i~-~~~~d~G~~~~d~tG~~lp~etleaik~~da~lkGa~~tP~~~~~~~~~L 166 (380)
.|.|+||||++.+|+.+++.|+.++++++ |+|||+|.++||+|+++++.|+++++++|.|++|||++||+++|++||+|
T Consensus 1 ~v~~~gdemtr~~~~~i~~~li~p~~d~~~~~y~DL~~~~Rd~T~dqvt~daa~a~~~~~vgvKcatiTp~~~rv~e~~l 80 (393)
T PLN00096 1 MVYVAGEEMTRYTMDLILAKWIEPHVDTSAWEFFDLRAKNRDDTEDQVLRDVIEAGARLKAIFKEPTITPTADQVKRLGL 80 (393)
T ss_pred CeeecchHHHHHHHHHHHHhhccceeccccceeeccCCccccccCCcchHHHHHHHHHhCeeeeecccCCCHHHHHhhch
Confidence 37899999999999999999999999996 99999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCchhHhhhcCC-eEEeeecccCCCCCCCCCCCCCEEEEeeccCccccccceeecCCCceeeeecCCCCCCccee
Q 016961 167 KSMWRSPNGTIRNILNG-TVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVEL 245 (380)
Q Consensus 167 ~~~~~spn~~LRk~ldl-yanvRPi~~~~lp~~~~~~~~divIvREnteG~Y~g~e~~~~~~g~~e~~~~~~~g~~~~~~ 245 (380)
+++|+|||++||+.||+ +++++||.|+++| ++|+.||+|.||+.+|+|.. ++.++++|+++++|+|++|++++.+
T Consensus 81 k~~w~sPNgtiR~~l~G~tvfR~pi~~~~i~---~~w~kpi~i~Rha~gd~y~a-~~~~~~~g~~~~~~~~~~g~~~~~~ 156 (393)
T PLN00096 81 KKAWGSPNGAMRRGWNGITISRDTIHIDGVE---LGYKKPVFFERHAVGGEYSA-GYKIVGKGTLVTTFVPEEGGKPIVV 156 (393)
T ss_pred hhhcCCCcHHHHhhcCCceEeeCCEecCCCC---CCccCceEEEeeccCCcccc-ceEecCCcEEEEEEEeCCCCCceEE
Confidence 99999999999999999 9999999888775 78999999999999999999 9999999999999999999888999
Q ss_pred eecccC-CcceeeecccCHHHHHHHHHHHHHHHhcCCCCEEEEeCCCcccccchhHHHHHHHHHHHhhhcccCC-----C
Q 016961 246 DVYNFK-GPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEE-----H 319 (380)
Q Consensus 246 ~v~~~~-~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk~~Vt~v~KaNVLk~tdglf~~i~~eVa~~eY~~~~~~-----p 319 (380)
++++|+ +.++++.||||.++|+||||+||+||++|+++||++||+||||.++|+|+ +|+||++++|+++|++ |
T Consensus 157 ~~~~f~~~~gv~~~~~N~~~si~RiAr~AF~~A~~r~~~Vt~v~KaNILK~tdg~f~-if~eVa~~eyk~~f~~~~~~~p 235 (393)
T PLN00096 157 DDRTITDDLNAVVTYHNPLDNVHHLARIFFGRCLDAGIVPYVVTKKTVFKWQEPFWE-IMKKVFDEEFKSKFVDKGVMKS 235 (393)
T ss_pred EEEecCCCCeEEEEeccCHHHHHHHHHHHHHHHHHhCCcEEEEeCccccccchHHHH-HHHHHHHHHHhhhhhhcccCCC
Confidence 999999 68999999999999999999999999999999999999999998888776 9999996699999998 8
Q ss_pred CeeEehhhHHHHHHHHHHCCCCc-EEEeCCchhhHHHhhhhhccCCccccCCCCCCCCC
Q 016961 320 SIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPN 377 (380)
Q Consensus 320 ~I~~e~~lIDa~a~~LVk~P~~F-ViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~p~ 377 (380)
+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+ +|+|++|+
T Consensus 236 ~V~~e~~lIDa~~~qlVk~P~~fdViv~~NlfGDIlSDlaA~l~GsLGl~-pSanig~d 293 (393)
T PLN00096 236 GDELVHLLSDAATMKLVVWTDGGFGMAAHNYDGDVLTDELAQVHKSPGFI-TSNLVGVD 293 (393)
T ss_pred ceEEEeeeHHHHHHHHHhCcccCCEEEECcccchHHHHHHHHhcCCcccc-cccccCCc
Confidence 89999999999999999999999 99999999999999999999999999 89999965
No 5
>PRK08299 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=1.7e-79 Score=616.62 Aligned_cols=296 Identities=67% Similarity=1.161 Sum_probs=260.8
Q ss_pred ccccccccEEEEcCCccHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcc
Q 016961 80 DRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDET 159 (380)
Q Consensus 80 ~~~~~~~~IvvlpGDgIGpEV~~~~~~~l~~~g~~i~~~~~d~G~~~~d~tG~~lp~etleaik~~da~lkGa~~tP~~~ 159 (380)
.+|||++||++|||||||||||++++.++++++++|+|+++++|.++|++||+++|++++++|+++|++||||++||.++
T Consensus 2 ~~~~~~~~~~~~~gd~i~~~~~~~~~~~~~~~~~~i~~~~~d~G~~~~~~~G~~lp~~tl~~ik~~da~LkGav~tp~~~ 81 (402)
T PRK08299 2 AKIKVKNPVVELDGDEMTRIIWKFIKDKLILPYLDIDLEYYDLGIENRDATDDQVTIDAANAIKKYGVGVKCATITPDEA 81 (402)
T ss_pred CccccCCceEEecCCCchHHHHHHHHHHHhccCCCeEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECCccCCCcc
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999743
Q ss_pred hhhhhcccccCCCCchhHhhhcCCeEEeeecccCCCCCCCCCCCCCEEEEeeccCccccccceeecCCCceeeeecCCCC
Q 016961 160 RMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDG 239 (380)
Q Consensus 160 ~~~~~~L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~~~~~~divIvREnteG~Y~g~e~~~~~~g~~e~~~~~~~g 239 (380)
++.+.++++.|+|||++||+.||||+|+|||+++++++..+++..||+|+||||||+|.|+++.+.+++.....|...+|
T Consensus 82 ~~~~~~~~~~~~s~n~~LRk~ldLyaNiRPv~~k~i~~~~pg~~~~ivivREnTEg~Y~gi~~~~~r~~~~~~~~~~~~g 161 (402)
T PRK08299 82 RVKEFNLKKMWKSPNGTIRNILGGTVFREPIICKNVPRLVPGWTKPIVIGRHAYGDQYRATDFKVPGKGKLTLVFTGEDG 161 (402)
T ss_pred cccccCccccccCchHHHHHHcCCeEEEEeeecccccccCCCCCCCEEEEecccCCcccceeEEeccCccceeeeecCCC
Confidence 33233445679999999999999999999987788766666666799999999999999999988777777776766554
Q ss_pred CCcceeeecccCCcceeeecccCHHHHHHHHHHHHHHHhcCCCCEEEEeCCCcccccchhHHHHHHHHHHHhhhcccCCC
Q 016961 240 TGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEH 319 (380)
Q Consensus 240 ~~~~~~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk~~Vt~v~KaNVLk~tdglf~~i~~eVa~~eY~~~~~~p 319 (380)
.+.+.++.++.+.++....+||+++|+||+|+||+||++|+++||++||+||||.+||+||++|+|||+++|.++|.++
T Consensus 162 -~~~e~~~~~~~~~~~~~~~~~Tr~~~eRIa~~AF~~A~~r~~kVt~v~KaNVlk~t~glf~~~~~evA~~~yp~~~~~~ 240 (402)
T PRK08299 162 -EPIEHEVHDFPGAGVAMGMYNLDESIRDFARASFNYGLDRKYPVYLSTKNTILKAYDGRFKDIFQEVYEAEFKEKFEAA 240 (402)
T ss_pred -ccccceecccccCceeEEEeecHHHHHHHHHHHHHHHHHcCCCEEEECCCCcchhhhHHHHHHHHHHHHHhCccccccC
Confidence 3334444444444555555799999999999999999999989999999999999999999999999965894445555
Q ss_pred CeeEehhhHHHHHHHHHHCCCCcEEEeCCchhhHHHhhhhhccCCccccCCCCCCCCC
Q 016961 320 SIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPN 377 (380)
Q Consensus 320 ~I~~e~~lIDa~a~~LVk~P~~FViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~p~ 377 (380)
+|+++|+|||++|||||++|++|||||+|||||||||++|+++|||||+ ||+|++++
T Consensus 241 ~i~~~~~~vDa~~~~lv~~P~~fVivt~NlfGDIlSDlaa~l~GglG~a-pSanig~~ 297 (402)
T PRK08299 241 GITYEHRLIDDMVASALKWEGGYVWACKNYDGDVQSDTVAQGFGSLGLM-TSVLMTPD 297 (402)
T ss_pred cEEEEEeeHHHHHHHHHhCcCCcEEEEeccccchhhhHHHhhcCCcccc-cceeeCCC
Confidence 7999999999999999999999999999999999999999999999999 88999987
No 6
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.5e-79 Score=599.38 Aligned_cols=255 Identities=18% Similarity=0.150 Sum_probs=229.1
Q ss_pred ccccEEEEcCCccHHHHHHHHHHHHhcC---CCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcch
Q 016961 84 VQNPIVEMDGDEMTRIIWQMIKDKLIFP---YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETR 160 (380)
Q Consensus 84 ~~~~IvvlpGDgIGpEV~~~~~~~l~~~---g~~i~~~~~d~G~~~~d~tG~~lp~etleaik~~da~lkGa~~tP~~~~ 160 (380)
+.++|++||||||||||+++++++|.+. +++|+|+++++|+++|++||.++|+|++++|+++|++||||+++|....
T Consensus 2 ~~~~IavipGDGIGpEv~~~a~kVl~a~~~~~~~~e~~~~~~G~~~~~~~G~~lpeetl~~~~~~DaiL~Gavg~P~~~~ 81 (348)
T COG0473 2 KTYTIAVIPGDGIGPEVMAAALKVLEAAAEFGLDFEFEEAEVGGEAYDKHGEPLPEETLESLKKADAILFGAVGGPKWDP 81 (348)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCceEEEEehhhHHHHHHcCCCCCHHHHHHHHhCCEEEEcccCCCCCCC
Confidence 4579999999999999999999988654 4899999999999999999999999999999999999999999995321
Q ss_pred hhhhcccccCCCCchhHhhhcCCeEEeeecccCCCCCCCCCC--CCCEEEEeeccCccccccceeecCCCceeeeecCCC
Q 016961 161 MKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW--KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPED 238 (380)
Q Consensus 161 ~~~~~L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~~~~--~~divIvREnteG~Y~g~e~~~~~~g~~e~~~~~~~ 238 (380)
+..+.+|.+++|||+||||||+||+ +++|++.+++ +.|||||||||||+|+|.++....++
T Consensus 82 -----~~~~~~~~ll~lRk~l~lyANlRP~--k~~~~~k~~~~~~~D~viVREnTeG~Y~G~~~~~~~~~---------- 144 (348)
T COG0473 82 -----LPRPERGLLLALRKELDLYANLRPA--KSLPGLKSPLVKGVDIVIVRENTEGLYFGEEGRILGGG---------- 144 (348)
T ss_pred -----CCCcccchHHHHHHhcCceeeeeec--ccCCCCCCccCCCccEEEEeeCCCccccCCCccccCCC----------
Confidence 1135678899999999999999998 7889888776 47999999999999999865311110
Q ss_pred CCCcceeeecccCCcceeeecccCHHHHHHHHHHHHHHHhcC-CCCEEEEeCCCcccccchhHHHHHHHHHHHhhhcccC
Q 016961 239 GTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSK-KWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFE 317 (380)
Q Consensus 239 g~~~~~~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~r-k~~Vt~v~KaNVLk~tdglf~~i~~eVa~~eY~~~~~ 317 (380)
+.+.++++|||+++|||+|+||++|++| +++||+|||+|||+.++|+|+++|+||++ +|
T Consensus 145 --------------eva~~~~~~Tr~~~eRI~r~AFe~A~~R~~kkvTsv~KaNVl~~s~~lwrev~~eva~-~y----- 204 (348)
T COG0473 145 --------------EVAIDTKVITRKGSERIARFAFELARKRGRKKVTSVHKANVLKLSDGLWREVVEEVAK-EY----- 204 (348)
T ss_pred --------------eEEEEEEeccHHHHHHHHHHHHHHHHhhCCCceEEEehhhhhhhhhHHHHHHHHHHhh-cC-----
Confidence 1245677899999999999999999999 68999999999999999999999999995 99
Q ss_pred CCCeeEehhhHHHHHHHHHHCCCCc-EEEeCCchhhHHHhhhhhccCCccccCCCCCCCCC
Q 016961 318 EHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPN 377 (380)
Q Consensus 318 ~p~I~~e~~lIDa~a~~LVk~P~~F-ViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~p~ 377 (380)
|+|+++|+|||+++||||++|++| ||||+|||||||||+||+|+|||||+ ||||.+++
T Consensus 205 -Pdv~~~~~~VD~aam~lV~~P~~FDViVt~NlFGDILSD~aa~l~GslGl~-PSAnig~~ 263 (348)
T COG0473 205 -PDVELDHMYVDAAAMQLVRNPEQFDVIVTSNLFGDILSDEAAALTGSLGLA-PSANLGDE 263 (348)
T ss_pred -CCcchhHHhHHHHHHHHhhCccccCEEEEccchhHHHHhHHHHhcCccccC-ccCccCCC
Confidence 999999999999999999999999 99999999999999999999999999 78999985
No 7
>KOG1526 consensus NADP-dependent isocitrate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=4.8e-77 Score=572.84 Aligned_cols=299 Identities=72% Similarity=1.243 Sum_probs=292.0
Q ss_pred ccccccccccEEEEcCCccHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCC
Q 016961 78 GIDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPD 157 (380)
Q Consensus 78 ~~~~~~~~~~IvvlpGDgIGpEV~~~~~~~l~~~g~~i~~~~~d~G~~~~d~tG~~lp~etleaik~~da~lkGa~~tP~ 157 (380)
.++||+|.+|||.|+||||++.||+.+++.|+.+++++++.|||+|.+++|+|+++++.|+.+++++++|++|||++|||
T Consensus 11 ~~~kikv~~pvVemdGDEmTRiIW~~Ik~KLIlPyldldlkyyDLgie~RD~T~DqVTid~A~A~lky~V~iKCATITPD 90 (422)
T KOG1526|consen 11 GMSKIKVANPVVEMDGDEMTRIIWKLIKEKLILPYLDLDLKYYDLGIENRDATNDQVTIDAAEAILKYNVGIKCATITPD 90 (422)
T ss_pred hhceeeccCCeEEecccHHHHHHHHHHHhhcccceeeeceeeeecCCcccccccceeeHHHHHHHHHhCceeEEeecCCc
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhcccccCCCCchhHhhhcCCeEEeeecccCCCCCCCCCCCCCEEEEeeccCccccccceeecCCCceeeeecCC
Q 016961 158 ETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPE 237 (380)
Q Consensus 158 ~~~~~~~~L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~~~~~~divIvREnteG~Y~g~e~~~~~~g~~e~~~~~~ 237 (380)
+.|++||+|++||+|||++||+.|+++++++||.|+++|+++|+|..||+|.||+.+|+|.+.+.+++++|++++.|.+.
T Consensus 91 EaRv~Ef~LkkMWkSPNGTIRNILgGTVFREpIi~kniPrlVpgW~kPI~IGRHAfgDQYkatD~vv~~~gkl~l~f~~~ 170 (422)
T KOG1526|consen 91 EARVEEFNLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPIIIGRHAFGDQYKATDFVVPGPGKLELVFTPS 170 (422)
T ss_pred HHHHHHhhhHHHhcCCCcchhhhcCceeeccceecCCcccccCCCccceEEeeccccccceeeeEeecCCCeEEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceeeecccCCcceeeecccCHHHHHHHHHHHHHHHhcCCCCEEEEeCCCcccccchhHHHHHHHHHHHhhhcccC
Q 016961 238 DGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFE 317 (380)
Q Consensus 238 ~g~~~~~~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk~~Vt~v~KaNVLk~tdglf~~i~~eVa~~eY~~~~~ 317 (380)
+|.....++|++|+++|++..|+||.++++.+|+.+|+||.++++++++++|++|||+|||+|++||+|+++.+||++|+
T Consensus 171 dg~~~~~~~V~~f~~~G~~~~m~~~dds~~~FAhssf~~Al~kk~pLylsTKNTILKkYDgrFKdiFqeiye~~yk~kfe 250 (422)
T KOG1526|consen 171 DGTQKVTLKVYDFKGSGVAAMMYNTDDSIRGFAHSSFQYALQKKWPLYLSTKNTILKKYDGRFKDIFQEIYEKQYKSKFE 250 (422)
T ss_pred CCCcceeEEEEecCCCceeEEEeeccchhhHHHHHHHHHHHHhcCceeeeccchHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence 99888899999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred CCCeeEehhhHHHHHHHHHHCCCCcEEEeCCchhhHHHhhhhhccCCccccCCCCCCCCC
Q 016961 318 EHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPN 377 (380)
Q Consensus 318 ~p~I~~e~~lIDa~a~~LVk~P~~FViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~p~ 377 (380)
+.+|||||+|||+|++|++|+.++|||+|+||+||++||+.||..|||||. .|+=+-||
T Consensus 251 ~~~IwYEHRLIDDmVAqa~KS~GGfvwAcKNYDGDVqSD~vAQg~GSLGlM-TSVLv~pd 309 (422)
T KOG1526|consen 251 ALGIWYEHRLIDDMVAQAMKSEGGFVWACKNYDGDVQSDIVAQGYGSLGLM-TSVLVCPD 309 (422)
T ss_pred hhcchhhhhhHHHHHHHHHhcCCceEEEeecCCCchhhhHHHhcccchhhh-eeEEEcCC
Confidence 999999999999999999999999999999999999999999999999999 66767776
No 8
>PRK08997 isocitrate dehydrogenase; Provisional
Probab=100.00 E-value=4.5e-76 Score=581.95 Aligned_cols=251 Identities=17% Similarity=0.174 Sum_probs=226.6
Q ss_pred ccccEEEEcCCccHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcchhhh
Q 016961 84 VQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKE 163 (380)
Q Consensus 84 ~~~~IvvlpGDgIGpEV~~~~~~~l~~~g~~i~~~~~d~G~~~~d~tG~~lp~etleaik~~da~lkGa~~tP~~~~~~~ 163 (380)
|+++|++|||||||||||++++++|.+.+++|+|+++++|.++|++||+++|++++++|+++|++||||+++|..
T Consensus 1 ~~~~I~vipGDGIGpEV~~~a~~vl~~~~~~~~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~L~Gavg~p~~----- 75 (334)
T PRK08997 1 MKQTITVIPGDGIGPSIIDATLKILDKLGCDFEYEFADAGLTALEKHGELLPQRTLDLIEKNKIALKGPLTTPVG----- 75 (334)
T ss_pred CCcEEEEECCCcccHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHhhCCCCCHHHHHHHHHCCEEEECcccCCCC-----
Confidence 457899999999999999999999977788999999999999999999999999999999999999999999942
Q ss_pred hcccccCCCCchhHhhhcCCeEEeeecccCCCCCCCCCC-CCCEEEEeeccCccccccceeecCCCceeeeecCCCCCCc
Q 016961 164 FGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW-KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGP 242 (380)
Q Consensus 164 ~~L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~~~~-~~divIvREnteG~Y~g~e~~~~~~g~~e~~~~~~~g~~~ 242 (380)
.+++|+|+.|||+||||+|+||+ +.+||+.+++ +.|++||||||||+|+|.++....++
T Consensus 76 ----~~~~~~~~~LR~~ldlyanvRP~--k~~~g~~~~~~~iD~vivREnteG~Y~g~~~~~~~~~-------------- 135 (334)
T PRK08997 76 ----EGFTSINVTLRKKFDLYANVRPV--LSFPGTKARYDNIDIITVRENTEGMYSGEGQTVSEDG-------------- 135 (334)
T ss_pred ----cCccchHHHHHHHcCCeEEEeec--ccCCCCCCccCCcCEEEEEeccCceecCccceecCCC--------------
Confidence 23568899999999999999997 6788877665 57999999999999999864321001
Q ss_pred ceeeecccCCcceeeecccCHHHHHHHHHHHHHHHhcCC-CCEEEEeCCCcccccchhHHHHHHHHHHHhhhcccCCCCe
Q 016961 243 VELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSI 321 (380)
Q Consensus 243 ~~~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk-~~Vt~v~KaNVLk~tdglf~~i~~eVa~~eY~~~~~~p~I 321 (380)
..+.++.+|||+++|||+|+||+||++|+ ++||++||+||||.+||+|+++|+|||+ +| |+|
T Consensus 136 ----------~~a~~~~~~Tr~~~eRi~r~Af~~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~-~y------P~V 198 (334)
T PRK08997 136 ----------ETAEATSIITRKGAERIVRFAYELARKEGRKKVTAVHKANIMKSTSGLFLKVAREVAL-RY------PDI 198 (334)
T ss_pred ----------ceEEEEEEeeHHHHHHHHHHHHHHHHhcCCCeEEEEeCCCcchhhhHHHHHHHHHHHh-hC------CCe
Confidence 02345667899999999999999999996 5699999999999999999999999998 89 999
Q ss_pred eEehhhHHHHHHHHHHCCCCc-EEEeCCchhhHHHhhhhhccCCccccCCCCCCCCC
Q 016961 322 WYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPN 377 (380)
Q Consensus 322 ~~e~~lIDa~a~~LVk~P~~F-ViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~p~ 377 (380)
+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+ ||+|++|+
T Consensus 199 ~~~~~~vDa~~~~lv~~P~~fdVivt~NlfGDILSDlaa~l~GglGl~-psanig~~ 254 (334)
T PRK08997 199 EFEEMIVDATCMQLVMNPEQFDVIVTTNLFGDILSDLCAGLVGGLGMA-PGANIGRD 254 (334)
T ss_pred EEEeeeHHHHHHHHhhCcccCcEEEEcCcccchhhHHHHHhcCCCCcC-cceeECCC
Confidence 999999999999999999999 99999999999999999999999999 88999876
No 9
>PLN00118 isocitrate dehydrogenase (NAD+)
Probab=100.00 E-value=8.4e-76 Score=585.96 Aligned_cols=247 Identities=21% Similarity=0.183 Sum_probs=225.5
Q ss_pred ccEEEEcCCccHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcchhhhhc
Q 016961 86 NPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFG 165 (380)
Q Consensus 86 ~~IvvlpGDgIGpEV~~~~~~~l~~~g~~i~~~~~d~G~~~~d~tG~~lp~etleaik~~da~lkGa~~tP~~~~~~~~~ 165 (380)
++|++||||||||||+++++++|.+.+++|+|+++++|.++|++||+++|+|++++|+++|++||||+++|..
T Consensus 42 ~~I~vipGDGIGpEV~~aa~~Vl~a~~~~ie~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~L~G~i~~p~~------- 114 (372)
T PLN00118 42 ITATLFPGDGIGPEIAESVKQVFTAAGVPIEWEEHYVGTTVDPRTGSFLTWESLESVRRNKVGLKGPMATPIG------- 114 (372)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHhcCCCeEEEEEeCcHHHHHhcCCcCCHHHHHHHHHCCEEEECCccCCcc-------
Confidence 6899999999999999999999987799999999999999999999999999999999999999999999842
Q ss_pred ccccCCCCchhHhhhcCCeEEeeecccCCCCCCCCCC-CCCEEEEeeccCccccccceeecCCCceeeeecCCCCCCcce
Q 016961 166 LKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW-KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVE 244 (380)
Q Consensus 166 L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~~~~-~~divIvREnteG~Y~g~e~~~~~~g~~e~~~~~~~g~~~~~ 244 (380)
.+++|+|++|||+||||+|+||| +.+||+.+++ ++|+|||||||||+|+|.++... +|+
T Consensus 115 --~~~~s~~~~LRk~ldLyaNvRPv--r~~pg~~~~~~~iD~vIVREnteG~Y~g~~~~~~-~gv--------------- 174 (372)
T PLN00118 115 --KGHRSLNLTLRKELGLYANVRPC--YSLPGYKTRYDDVDLVTIRENTEGEYSGLEHQVV-RGV--------------- 174 (372)
T ss_pred --ccccCchHHHHHHcCCeeeeccc--ccCCCccCcccCceEEEEEecCCCcccceeeecc-CCe---------------
Confidence 24678999999999999999997 6788877654 57999999999999999875421 111
Q ss_pred eeecccCCcceeeecccCHHHHHHHHHHHHHHHhcCC-CCEEEEeCCCcccccchhHHHHHHHHHHHhhhcccCCCCeeE
Q 016961 245 LDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWY 323 (380)
Q Consensus 245 ~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk-~~Vt~v~KaNVLk~tdglf~~i~~eVa~~eY~~~~~~p~I~~ 323 (380)
+.++.+|||+++|||+|+||+||++|+ ++||++||+||||.+||+|+++|+||++ +| |+|++
T Consensus 175 ----------~~~~~v~Tr~~~eRIar~AF~~A~~r~~k~Vt~v~KaNvlk~tdglf~e~~~eva~-ey------PdI~~ 237 (372)
T PLN00118 175 ----------VESLKIITRQASLRVAEYAFHYAKTHGRKRVSAIHKANIMKKTDGLFLKCCREVAE-KY------PEIVY 237 (372)
T ss_pred ----------EEEEEecCHHHHHHHHHHHHHHHHHcCCCeEEEEECCccchhhhHHHHHHHHHHHh-hC------CCceE
Confidence 224455899999999999999999996 5699999999999999999999999998 89 99999
Q ss_pred ehhhHHHHHHHHHHCCCCc-EEEeCCchhhHHHhhhhhccCCccccCCCCCCCCC
Q 016961 324 EHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPN 377 (380)
Q Consensus 324 e~~lIDa~a~~LVk~P~~F-ViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~p~ 377 (380)
+|+|||+||||||++|++| ||||+|||||||||++|+++|||||+ ||+|++|+
T Consensus 238 ~~~~VDa~a~~Lv~~P~~fDViVt~NLfGDILSDlaa~l~GglGla-pSanig~~ 291 (372)
T PLN00118 238 EEVIIDNCCMMLVKNPALFDVLVMPNLYGDIISDLCAGLIGGLGLT-PSCNIGEN 291 (372)
T ss_pred EeeeHHHHHHHhccCcccCcEEEEcCcccchhhHHHHHhcCCcccC-cceeecCC
Confidence 9999999999999999999 99999999999999999999999999 77999987
No 10
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=6.4e-75 Score=584.78 Aligned_cols=273 Identities=71% Similarity=1.150 Sum_probs=237.4
Q ss_pred cccccccccEEEEcCCccHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCc
Q 016961 79 IDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDE 158 (380)
Q Consensus 79 ~~~~~~~~~IvvlpGDgIGpEV~~~~~~~l~~~g~~i~~~~~d~G~~~~d~tG~~lp~etleaik~~da~lkGa~~tP~~ 158 (380)
+.||||++|+|+|||||||+|+|+++++++++++++|+|+++|+|+++|++||+++|+|++++|+++|++||||++||..
T Consensus 3 ~~~~~~~~p~~~~~Gd~~~~~~~~~~~~~~~~~~~~i~~~~~d~G~~~~~~tg~~lp~e~le~~k~~da~lkGav~tp~~ 82 (410)
T PLN00103 3 FEKIKVANPIVEMDGDEMTRVIWKSIKDKLIFPFLDLDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDE 82 (410)
T ss_pred cccccccCCeEEecCCcchHHHHHHHHHHHhcCCCCeEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECCccCccc
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999964
Q ss_pred chhhhhcccccCCCCchhHhhhcCCeEEeeecccCCCC----CCCCC----------------------CCCCEEEEeec
Q 016961 159 TRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIP----RIVPG----------------------WKKPICIGRHA 212 (380)
Q Consensus 159 ~~~~~~~L~~~~~spn~~LRk~ldlyanvRPi~~~~lp----~~~~~----------------------~~~divIvREn 212 (380)
.++.|.++++.|+|||++||+.||||+|+|||.|+++| |+..+ -+.|+||||||
T Consensus 83 ~~~~~~~~~~~~~s~n~~lRk~ldlyanvRP~~vk~~~~~~~g~~~~i~~~~~~~~~~~~~~d~v~~~~~~id~vivREN 162 (410)
T PLN00103 83 ARVKEFGLKQMWKSPNGTIRNILNGTVFREPIICKNIPRLVPGWTKPICIGRHAFGDQYRATDAVIKGPGKLKLVFVPEG 162 (410)
T ss_pred ccccccCccccccCchHHHHHHcCCeEEecchhccccCccCCCCCCceeecccccccccccceeccCCCCceEEEEEecC
Confidence 33334455567999999999999999999996557787 43322 13477899999
Q ss_pred cCccccccceeecCCCceeeeecCCCCCCcceeeecccCCcceeeecccCHHHHHHHHHHHHHHHhcCCCCEEEEeCCCc
Q 016961 213 FGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTI 292 (380)
Q Consensus 213 teG~Y~g~e~~~~~~g~~e~~~~~~~g~~~~~~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk~~Vt~v~KaNV 292 (380)
|||+| ++... .|.+. .++....++|+++|+||+|+||+||++|+++||++||+||
T Consensus 163 TEg~y---e~~~~-------~~~g~---------------~~v~~~~~~T~~~~~Riar~AFe~A~~r~~~vt~v~KaNV 217 (410)
T PLN00103 163 KDEKT---ELEVY-------NFTGA---------------GGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTI 217 (410)
T ss_pred CCcee---EEEee-------ccCCC---------------cceEEEEEcCHHHHHHHHHHHHHHHHhcCCcEEEECCCCC
Confidence 99998 22110 01110 1223344469999999999999999999989999999999
Q ss_pred ccccchhHHHHHHHHHHHhhhcccCCCCeeEehhhHHHHHHHHHHCCCCcEEEeCCchhhHHHhhhhhccCCccccCCCC
Q 016961 293 LKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGTVSAHSSAFEV 372 (380)
Q Consensus 293 Lk~tdglf~~i~~eVa~~eY~~~~~~p~I~~e~~lIDa~a~~LVk~P~~FViVt~NLfGDILSDlaA~l~GsLGlap~~~ 372 (380)
||.+||+||++|+||++++||++|.+|+|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+ ||+
T Consensus 218 lk~~dglf~~~~~eva~~~~~~eyp~~~I~~~~~lVDa~a~~lv~~P~~fViv~~NLfGDIlSDlaA~l~GslGla-pSa 296 (410)
T PLN00103 218 LKKYDGRFKDIFQEVYEAQWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLM-TSV 296 (410)
T ss_pred chhhHHHHHHHHHHHHHhhhhhhCCCCceEEEEeEHHHHHHHHhcCCCCCEEEEcccchHHHHHHHHHhcCchhhh-hcc
Confidence 9999999999999999877888885559999999999999999999999999999999999999999999999999 889
Q ss_pred CCCCC
Q 016961 373 SRAPN 377 (380)
Q Consensus 373 ~~~p~ 377 (380)
|++|+
T Consensus 297 nig~~ 301 (410)
T PLN00103 297 LVCPD 301 (410)
T ss_pred ccCCC
Confidence 99987
No 11
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases. This family is closely related to both the LeuB genes found in TIGR00169 and the mitochondrial eukaryotic isocitrate dehydratases found in TIGR00175. All of these are included within the broader subfamily model, pfam00180.
Probab=100.00 E-value=9.2e-75 Score=570.74 Aligned_cols=243 Identities=18% Similarity=0.182 Sum_probs=221.9
Q ss_pred EEEEcCCccHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcchhhhhccc
Q 016961 88 IVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLK 167 (380)
Q Consensus 88 IvvlpGDgIGpEV~~~~~~~l~~~g~~i~~~~~d~G~~~~d~tG~~lp~etleaik~~da~lkGa~~tP~~~~~~~~~L~ 167 (380)
|++||||||||||++++++++.+.+++|+|+++++|.+++++||+++|++++++|+++|++||||+++|..
T Consensus 1 i~~ipGDGIGpEv~~~a~~vl~~~~~~i~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~l~Gavg~p~~--------- 71 (322)
T TIGR02088 1 VAVIPGDGIGPEVIEAAIRILNKLGLEIEFIEFEAGDEALKKYGSALPEDTLEEIRKADAILFGAVTTPAN--------- 71 (322)
T ss_pred CEEeCCCCccHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHhCCCCCHHHHHHHHHCCEEEECcccCCCC---------
Confidence 68999999999999999999987799999999999999999999999999999999999999999999953
Q ss_pred ccCCCCchhHhhhcCCeEEeeecccCCCCCCCCCC--CCCEEEEeeccCccccccceeecCCCceeeeecCCCCCCccee
Q 016961 168 SMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW--KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVEL 245 (380)
Q Consensus 168 ~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~~~~--~~divIvREnteG~Y~g~e~~~~~~g~~e~~~~~~~g~~~~~~ 245 (380)
.+++|+|++|||+||||+|+||| +.+|++..++ +.|+|||||||||+|+|.++.. ++
T Consensus 72 ~~~~s~~~~LR~~ldlyanvRP~--r~~~g~~~~~~~~iD~vivREnteG~Y~g~~~~~--~~----------------- 130 (322)
T TIGR02088 72 PGYKSVIVTLRKELDLYANVRPA--KSLPGIPDLYPNGKDIVIVRENTEGLYAGFEFGF--SD----------------- 130 (322)
T ss_pred CCccChHHHHHHHcCCEEEEEEe--eccCCCCCCCCCCCCEEEEEeCcCCeeecccccc--Cc-----------------
Confidence 23678999999999999999998 5677776553 6899999999999999986421 00
Q ss_pred eecccCCcceeeecccCHHHHHHHHHHHHHHHhcCCCCEEEEeCCCcccccchhHHHHHHHHHHHhhhcccCCCCeeEeh
Q 016961 246 DVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEH 325 (380)
Q Consensus 246 ~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk~~Vt~v~KaNVLk~tdglf~~i~~eVa~~eY~~~~~~p~I~~e~ 325 (380)
.+.++.++|++++|||+|+||+||++|+++||++||+|||+.++|+|+++|+||++ +| | |+++|
T Consensus 131 --------~a~~~~~~tr~~~eRi~r~AF~~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~eva~-~y------p-v~~~~ 194 (322)
T TIGR02088 131 --------RAIAIRVITREGSERIARFAFNLAKERNRKVTCVHKANVLKGTDGLFREVCREIAK-RY------G-VEYRD 194 (322)
T ss_pred --------ceEEEEEecHHHHHHHHHHHHHHHHHcCCcEEEEeCCcchhhhHHHHHHHHHHHHH-hC------C-eeeee
Confidence 12344558999999999999999999988899999999999999999999999998 89 9 99999
Q ss_pred hhHHHHHHHHHHCCCCc-EEEeCCchhhHHHhhhhhccCCccccCCCCCCCCC
Q 016961 326 RLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPN 377 (380)
Q Consensus 326 ~lIDa~a~~LVk~P~~F-ViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~p~ 377 (380)
+|||++|||||++|++| ||||+|||||||||++|+++|||||+ ||+|++|+
T Consensus 195 ~~vDa~~~~lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl~-pSanig~~ 246 (322)
T TIGR02088 195 MYVDSAAMNLVKDPWRFDVIVTTNMFGDILSDLASALAGSLGLA-PSANIGDR 246 (322)
T ss_pred eeHHHHHHHHhhCCcCceEEEecCcccchhhHHHHhhcCCCCCC-ceeEEcCC
Confidence 99999999999999999 99999999999999999999999999 88999876
No 12
>PRK03437 3-isopropylmalate dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-74 Score=574.06 Aligned_cols=254 Identities=15% Similarity=0.118 Sum_probs=224.4
Q ss_pred ccEEEEcCCccHHHHHHHHHHHHhcC---CCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcchhh
Q 016961 86 NPIVEMDGDEMTRIIWQMIKDKLIFP---YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMK 162 (380)
Q Consensus 86 ~~IvvlpGDgIGpEV~~~~~~~l~~~---g~~i~~~~~d~G~~~~d~tG~~lp~etleaik~~da~lkGa~~tP~~~~~~ 162 (380)
++|++||||||||||++++++++.+. +++|+|+++++|++++++||+++|++++++|+++|++||||+++|... .
T Consensus 5 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gavg~p~~~--~ 82 (344)
T PRK03437 5 MKLAVIPGDGIGPEVVAEALKVLDAVAAGGPGVETTEYDLGARRYLRTGETLPDSVLAELRQHDAILLGAIGDPSVP--S 82 (344)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHCCcCCHHHHHHHHHCCEEEEeecCCCCCC--C
Confidence 57999999999999999999988643 899999999999999999999999999999999999999999999411 0
Q ss_pred hhcccccCCCCchhHhhhcCCeEEeeecccCCCCCCCCCC----CCCEEEEeeccCccccccceeecCCCceeeeecCCC
Q 016961 163 EFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW----KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPED 238 (380)
Q Consensus 163 ~~~L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~~~~----~~divIvREnteG~Y~g~e~~~~~~g~~e~~~~~~~ 238 (380)
+ ...++++++|||+||||+|+||+ +.+|++.+++ +.|++||||||||+|+|.+... .+|.
T Consensus 83 --~--~~~~~~~~~LRk~ldLyaNvRP~--r~~pg~~sp~k~~~~iD~vivREnteG~Y~g~~~~~-~~~~--------- 146 (344)
T PRK03437 83 --G--VLERGLLLKLRFALDHYVNLRPS--KLYPGVTSPLAGPGDIDFVVVREGTEGPYTGNGGAL-RVGT--------- 146 (344)
T ss_pred --C--CcccchHHHHHHHcCCeEEEEEe--ecCCCCCCcCCCCCCCCEEEEEECCCccccCCcccc-cCCC---------
Confidence 0 12567789999999999999997 6778776654 5799999999999999975322 1111
Q ss_pred CCCcceeeecccCCcceeeecccCHHHHHHHHHHHHHHHhcCC-CCEEEEeCCCcccccchhHHHHHHHHHHHhhhcccC
Q 016961 239 GTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFE 317 (380)
Q Consensus 239 g~~~~~~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk-~~Vt~v~KaNVLk~tdglf~~i~~eVa~~eY~~~~~ 317 (380)
..+.+.++.+||+++++||+|+||+||++|+ ++||++||+|||+.++|+|+++|+||++ +|
T Consensus 147 ------------~~~~a~~~~~~Tr~~~~RIa~~AF~~A~~r~~k~Vt~v~KaNvl~~t~glf~~~~~eva~-~y----- 208 (344)
T PRK03437 147 ------------PHEVATEVSVNTAFGVERVVRDAFERAQKRPRKHLTLVHKTNVLTFAGDLWQRTVDEVAA-EY----- 208 (344)
T ss_pred ------------cceeEEEEEEecHHHHHHHHHHHHHHHHhCCCCeEEEEECCccccccchHHHHHHHHHHh-hC-----
Confidence 0112456777999999999999999999995 5799999999999999999999999998 89
Q ss_pred CCCeeEehhhHHHHHHHHHHCCCCc-EEEeCCchhhHHHhhhhhccCCccccCCCCCCCCC
Q 016961 318 EHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPN 377 (380)
Q Consensus 318 ~p~I~~e~~lIDa~a~~LVk~P~~F-ViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~p~ 377 (380)
|+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+ ||+|++|+
T Consensus 209 -pdV~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~GglGl~-pSanig~~ 267 (344)
T PRK03437 209 -PDVTVDYQHVDAATIFMVTDPSRFDVIVTDNLFGDIITDLAAAVTGGIGLA-ASGNINPT 267 (344)
T ss_pred -CCceEeehhHHHHHHHHhcCcccCcEEEEcccchhhhhHHHHHhcCCcccc-ceeeecCC
Confidence 999999999999999999999999 99999999999999999999999999 88999876
No 13
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional
Probab=100.00 E-value=4e-74 Score=567.31 Aligned_cols=243 Identities=19% Similarity=0.170 Sum_probs=221.1
Q ss_pred ccEEEEcCCccHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcchhhhhc
Q 016961 86 NPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFG 165 (380)
Q Consensus 86 ~~IvvlpGDgIGpEV~~~~~~~l~~~g~~i~~~~~d~G~~~~d~tG~~lp~etleaik~~da~lkGa~~tP~~~~~~~~~ 165 (380)
.+|++||||||||||+++++++|.+.+++|+|+++++|.+++++||+++|++++++|+++|++||||+++|.
T Consensus 2 ~~I~vipGDGIGpEv~~~~~~vl~~~~~~~~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~l~G~vg~p~-------- 73 (330)
T PRK14025 2 HKICVIEGDGIGKEVVPAALHVLEATGLPFEFVYAEAGDEVFEKTGKALPEETIEAAKEADAVLFGAAGETA-------- 73 (330)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHhcCCcEEEEEEcCCHHHHHHhCCCCCHHHHHHHHHCCEEEEccCCCCc--------
Confidence 479999999999999999999998778999999999999999999999999999999999999999999883
Q ss_pred ccccCCCCchhHhhhcCCeEEeeecccCCCCCCCCCC-CCCEEEEeeccCccccccceeecCCCceeeeecCCCCCCcce
Q 016961 166 LKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW-KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVE 244 (380)
Q Consensus 166 L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~~~~-~~divIvREnteG~Y~g~e~~~~~~g~~e~~~~~~~g~~~~~ 244 (380)
.+.|+.||++||||+|+||+ +.+||+.+++ +.|+|||||||||+|+|.++... ++
T Consensus 74 -----~~~~~~LR~~ldlyanvRP~--r~~pg~~~~~~~iD~vivREnteG~Y~g~~~~~~-~~---------------- 129 (330)
T PRK14025 74 -----ADVIVKLRRILDTYANVRPV--KSYKGVKCLYPDIDYVIVRENTEGLYKGIEAEIA-DG---------------- 129 (330)
T ss_pred -----cchHHHHHHHcCCeEEEEEe--ecCCCCCCccCCcCEEEEEECCCceecCcccccC-CC----------------
Confidence 25578999999999999997 6788877654 57999999999999999875321 11
Q ss_pred eeecccCCcceeeecccCHHHHHHHHHHHHHHHhcC----C-CCEEEEeCCCcccccchhHHHHHHHHHHHhhhcccCCC
Q 016961 245 LDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSK----K-WPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEH 319 (380)
Q Consensus 245 ~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~r----k-~~Vt~v~KaNVLk~tdglf~~i~~eVa~~eY~~~~~~p 319 (380)
.+.++.+|||++++||+|+||+||++| + ++||++||+||||.+||+|+++|+|||+ +| |
T Consensus 130 ---------~~~~~~~~Tr~~~~Ri~r~Af~~A~~r~~~~~~k~Vt~v~KaNvl~~t~glf~e~~~eva~-~y------p 193 (330)
T PRK14025 130 ---------VTVATRVITRKASERIFRFAFEMAKRRKKMGKEGKVTCAHKANVLKKTDGLFKKTFYEVAK-EY------P 193 (330)
T ss_pred ---------ceEEeEeccHHHHHHHHHHHHHHHHhccccCCCCeEEEEECCCchhhhhHHHHHHHHHHHh-hC------C
Confidence 122445589999999999999999999 4 4799999999999999999999999998 89 9
Q ss_pred CeeEehhhHHHHHHHHHHCCCCc-EEEeCCchhhHHHhhhhhccCCccccCCCCCCCCC
Q 016961 320 SIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPN 377 (380)
Q Consensus 320 ~I~~e~~lIDa~a~~LVk~P~~F-ViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~p~ 377 (380)
+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+ +|+|++|+
T Consensus 194 ~i~~~~~~vDa~~~~lv~~P~~fDVivt~NlfGDILSDlaa~l~GglGl~-psanig~~ 251 (330)
T PRK14025 194 DIKAEDYYVDAMNMYIITRPQTFDVVVTSNLFGDILSDGAAGLVGGLGLA-PSANIGDK 251 (330)
T ss_pred CeEEEeeeHHHHHHHHhcCcccCcEEEEcCcccchhhHHHHHhcCCCCcc-cceeeCCC
Confidence 99999999999999999999999 99999999999999999999999999 79999986
No 14
>PRK08194 tartrate dehydrogenase; Provisional
Probab=100.00 E-value=3.9e-74 Score=571.89 Aligned_cols=254 Identities=14% Similarity=0.098 Sum_probs=222.5
Q ss_pred ccEEEEcCCccHHHHHHHHHHHHhcC-----CCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcch
Q 016961 86 NPIVEMDGDEMTRIIWQMIKDKLIFP-----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETR 160 (380)
Q Consensus 86 ~~IvvlpGDgIGpEV~~~~~~~l~~~-----g~~i~~~~~d~G~~~~d~tG~~lp~etleaik~~da~lkGa~~tP~~~~ 160 (380)
++|++||||||||||+++++++|.+. +++|+|+++++|.+++++||+++|++++++|+++|++||||+++|...
T Consensus 4 ~~I~vipGDGIGpEV~~~a~~vl~a~~~~~~~~~~e~~~~~~G~~~~~~~G~~lp~~tl~~~k~~dail~G~vg~p~~~- 82 (352)
T PRK08194 4 FKIAVIPGDGVGKEVVPAAVRVLKAVAEVHGGLKFEFTEFPWSCEYYLEHGEMMPEDGLEQLKQFDAIFLGAVGNPKLV- 82 (352)
T ss_pred eEEEEECCCCchHHHHHHHHHHHHHHHhhccCCceEEEEEcCcHHHHHHhCCCCCHHHHHHHHhCCEEEEcccCCCCcC-
Confidence 57999999999999999999988532 689999999999999999999999999999999999999999999411
Q ss_pred hhhhcccccCCCCchhHhhhcCCeEEeeecccCCCCCCCCCC----CCCEEEEeeccCccccccceeecCCCceeeeecC
Q 016961 161 MKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW----KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDP 236 (380)
Q Consensus 161 ~~~~~L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~~~~----~~divIvREnteG~Y~g~e~~~~~~g~~e~~~~~ 236 (380)
+.. ...++++++||++||||+|+||+ +.+|++.+++ +.|+|||||||||+|+|.++... +|.
T Consensus 83 -~~~---~~~~~~~l~LR~~ldLyaNvRP~--k~~pg~~splk~~~~iD~vivREnteG~Y~g~~~~~~-~g~------- 148 (352)
T PRK08194 83 -PDH---ISLWGLLIKIRREFEQVINIRPA--KQLRGIKSPLANPKDFDLLVVRENSEGEYSEVGGRIH-RGE------- 148 (352)
T ss_pred -CCC---CCchhhHHHHHHHcCCEEEEEee--ecCCCCCCCCCCCCCCCEEEEEeCCCccccCCCcccc-CCc-------
Confidence 000 12334589999999999999997 6677776553 57999999999999999753221 010
Q ss_pred CCCCCcceeeecccCCcceeeecccCHHHHHHHHHHHHHHHhcCCCCEEEEeCCCcccccchhHHHHHHHHHHHhhhccc
Q 016961 237 EDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKF 316 (380)
Q Consensus 237 ~~g~~~~~~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk~~Vt~v~KaNVLk~tdglf~~i~~eVa~~eY~~~~ 316 (380)
.+.+.++++|||+++|||+|+||+||++|+++||+|||+|||+.++|+|+++|+|||+ +|
T Consensus 149 ---------------~~~a~~~~~~Tr~~~eRI~r~Af~~A~~r~~~Vt~v~KaNvl~~t~~lf~~~~~eva~-~y---- 208 (352)
T PRK08194 149 ---------------DEIAIQNAVFTRKGTERAMRYAFELAAKRRKHVTSATKSNGIVHSMPFWDEVFQEVGK-DY---- 208 (352)
T ss_pred ---------------cceEEEEEEeeHHHHHHHHHHHHHHHHHcCCcEEEEeCcchhhhhHHHHHHHHHHHHh-hC----
Confidence 0124567779999999999999999999988899999999999999999999999997 89
Q ss_pred CCCCeeEehhhHHHHHHHHHHCCCCc-EEEeCCchhhHHHhhhhhccCCccccCCCCCCCCC
Q 016961 317 EEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPN 377 (380)
Q Consensus 317 ~~p~I~~e~~lIDa~a~~LVk~P~~F-ViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~p~ 377 (380)
|+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+ ||+|++|+
T Consensus 209 --p~V~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~GslGl~-pSanig~~ 267 (352)
T PRK08194 209 --PEIETDSQHIDALAAFFVTRPEEFDVIVASNLFGDILTDIGAAIMGSIGIA-PAANINVN 267 (352)
T ss_pred --CCceeeehhHHHHHHHHhhChhhCcEEEEccchHHHHhHHHHHhcCCcccc-ceeeecCC
Confidence 999999999999999999999999 99999999999999999999999999 69999875
No 15
>PRK07006 isocitrate dehydrogenase; Reviewed
Probab=100.00 E-value=5.8e-74 Score=579.78 Aligned_cols=274 Identities=19% Similarity=0.163 Sum_probs=232.7
Q ss_pred EEEEcCCccHHHHHHHHHHHHhcC-------CCCeEEEEEecchHHHhhcCC--CCcHHHHHHHHhcCeeeecCCCCCCc
Q 016961 88 IVEMDGDEMTRIIWQMIKDKLIFP-------YLDLDIKYYDLGILNRDATDD--KVTVESAEATLKYNVAIKCATITPDE 158 (380)
Q Consensus 88 IvvlpGDgIGpEV~~~~~~~l~~~-------g~~i~~~~~d~G~~~~d~tG~--~lp~etleaik~~da~lkGa~~tP~~ 158 (380)
|++||||||||||+++++++|.+. +++|+|+++++|.++|++||+ ++|++++++|+++|++||||++||.+
T Consensus 22 I~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~~~lp~~tl~~~~~~da~l~G~i~tp~~ 101 (409)
T PRK07006 22 IPFIEGDGIGPDITPAMLKVVDAAVEKAYKGERKISWMEIYAGEKATKVYGEDVWLPEETLDLIREYRVAIKGPLTTPVG 101 (409)
T ss_pred EEEeCCCcccHHHHHHHHHHHHHHHHhccCCCCceEEEEEecCHHHHHhhCCcCCCCHHHHHHHHHCCEEEECcccCCCC
Confidence 999999999999999999988532 258999999999999999999 99999999999999999999999953
Q ss_pred chhhhhcccccCCCCchhHhhhcCCeEEeeecccCCCCCCCCCC----CCCEEEEeeccCccccccceeecCCC-ceeee
Q 016961 159 TRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW----KKPICIGRHAFGDQYRATDTVIKGPG-KLKMV 233 (380)
Q Consensus 159 ~~~~~~~L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~~~~----~~divIvREnteG~Y~g~e~~~~~~g-~~e~~ 233 (380)
..++|+|++||++||||+|+||| +.+|++.+++ ++|||||||||||+|+|.++....++ ...+.
T Consensus 102 ---------~~~~s~~l~LR~~ldLyaNvRPv--k~~pgl~~plk~~~~iD~vIvREnteG~Y~g~~~~~~~~~~~~~~~ 170 (409)
T PRK07006 102 ---------GGIRSLNVALRQELDLYVCLRPV--RYFKGVPSPVKRPEDTDMVIFRENSEDIYAGIEWKAGSAEAKKVIK 170 (409)
T ss_pred ---------cCccChHHHHHHHcCCEEEEEEE--ecCCCCCCCCCCCCCCCEEEEEeccCCeecccccccCCcccceeee
Confidence 23678999999999999999998 5667765543 57999999999999999975322111 11111
Q ss_pred ecCCCCCCcceeeecccCCcceeeecccCHHHHHHHHHHHHHHHhcCC-CCEEEEeCCCcccccchhHHHHHHHHHHHhh
Q 016961 234 FDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEERW 312 (380)
Q Consensus 234 ~~~~~g~~~~~~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk-~~Vt~v~KaNVLk~tdglf~~i~~eVa~~eY 312 (380)
|.... ..+++++++.+.+.+..+||++++|||+|+||+||++|+ ++||++||+||||.+||+|++++.|||+++|
T Consensus 171 ~~~~~----~~~~~~~~~~~~a~~~~v~Tr~~~eRi~r~AFe~A~~r~rkkVt~v~KaNVlk~tdglf~~~~~eva~~ey 246 (409)
T PRK07006 171 FLQEE----MGVKKIRFPETSGIGIKPVSEEGTERLVRAAIEYAIDNDRKSVTLVHKGNIMKFTEGAFKDWGYQLAEEEF 246 (409)
T ss_pred ccccc----cCcccccccccceEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccccchHHHHHHHHHHHHHHh
Confidence 22111 123344445555677888999999999999999999996 5799999999999999999998889998779
Q ss_pred hcccCC-------------CCeeEehhhHHHHHHHHHHCCCCc-EEEeCCchhhHHHhhhhhccCCccccCCCCCCCCC
Q 016961 313 RQKFEE-------------HSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPN 377 (380)
Q Consensus 313 ~~~~~~-------------p~I~~e~~lIDa~a~~LVk~P~~F-ViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~p~ 377 (380)
+++|++ |+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+ ||+|++++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~p~v~~~~~~vDa~~~~lv~~P~~fDVIvt~NlfGDILSDlaa~l~GglGla-pSanig~~ 324 (409)
T PRK07006 247 GDELIDGGPWDKIKNPETGKEIIVKDSIADAFLQQILLRPAEYDVIATMNLNGDYISDALAAQVGGIGIA-PGANINDG 324 (409)
T ss_pred hhhhhccccccccccccCCCCceeehHHHHHHHHHHhhCcccCcEEEEcCcccchhhHHHHHhcCchhhc-ccceeCCC
Confidence 777766 899999999999999999999999 99999999999999999999999999 78999865
No 16
>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent, prokaryotic type. Prokaryotic NADP-dependent isocitrate dehydrogenases resemble their NAD-dependent counterparts and 3-isopropylmalate dehydrogenase (an NAD-dependent enzyme) more closely than they resemble eukaryotic NADP-dependent isocitrate dehydrogenases.
Probab=100.00 E-value=7.4e-74 Score=580.73 Aligned_cols=274 Identities=18% Similarity=0.139 Sum_probs=230.7
Q ss_pred EEEEcCCccHHHHHHHHHHHHhcC-------CCCeEEEEEecchHHHhhcC--CCCcHHHHHHHHhcCeeeecCCCCCCc
Q 016961 88 IVEMDGDEMTRIIWQMIKDKLIFP-------YLDLDIKYYDLGILNRDATD--DKVTVESAEATLKYNVAIKCATITPDE 158 (380)
Q Consensus 88 IvvlpGDgIGpEV~~~~~~~l~~~-------g~~i~~~~~d~G~~~~d~tG--~~lp~etleaik~~da~lkGa~~tP~~ 158 (380)
|++||||||||||+++++++|.+. +++|+|+++++|+++|++|| +++|+|++++|+++|++||||++||.+
T Consensus 29 I~vipGDGIGpEv~~~a~~vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~~~lp~~tl~~~~~~da~l~Ga~~tp~~ 108 (416)
T TIGR00183 29 IPYIEGDGIGVDVTPAAIKVLDAAVEKAYKGEKKIVWFEVYAGEKAYQLYGQDQWLPADTLDAIKEYRVAIKGPLTTPVG 108 (416)
T ss_pred EEEeCCCcccHHHHHHHHHHHHHHHHhccCCCCceEEEEEecCHHHHHHhCCCCCCCHHHHHHHHHCCEEEECcccCCCC
Confidence 999999999999999999888522 15999999999999999999 999999999999999999999999942
Q ss_pred chhhhhcccccCCCCchhHhhhcCCeEEeeecccCCCCCCCCCC----CCCEEEEeeccCccccccceeecCCCceee-e
Q 016961 159 TRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW----KKPICIGRHAFGDQYRATDTVIKGPGKLKM-V 233 (380)
Q Consensus 159 ~~~~~~~L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~~~~----~~divIvREnteG~Y~g~e~~~~~~g~~e~-~ 233 (380)
.+|+|+|+.||++||||+|+||| +.+|++.+++ +.||+||||||||+|+|.++....++..++ .
T Consensus 109 ---------~~~~s~~l~LR~~ldLyaNvRP~--k~~pgl~s~~~~~~~vDivIvREnteG~Y~g~~~~~~~~~~~~~~~ 177 (416)
T TIGR00183 109 ---------GGIRSLNVALRQELDLYVCLRPV--RYYKGVPSPVKHPEKVDMVIFRENTEDIYAGIEWAEGSEEAKKLIR 177 (416)
T ss_pred ---------ccccCcHHHHHHHcCCEEEEeEe--ecCCCCCCcCCCCCCCCEEEEEeCCCCcccccccccCcccceeeec
Confidence 35789999999999999999997 5667665543 579999999999999999864322221111 1
Q ss_pred ecCCCCCCcceeeecccCCcceeeecccCHHHHHHHHHHHHHHHhcCC-CCEEEEeCCCcccccchhHHHHHHHHHHHhh
Q 016961 234 FDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEERW 312 (380)
Q Consensus 234 ~~~~~g~~~~~~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk-~~Vt~v~KaNVLk~tdglf~~i~~eVa~~eY 312 (380)
|....+ ..+.+.++++.++++.+||+++++||+|+||+||++|+ ++||++||+||||.+||+|+++|.|||++||
T Consensus 178 ~~~~~~----g~~~~~~~~~~a~~~~~~tr~~~~Riar~AFe~A~~r~rk~Vt~v~KaNvlk~tdglf~e~~~eva~~ey 253 (416)
T TIGR00183 178 FLQNEL----GVKKIRFPEDSGIGIKPISEEGTKRLVRAAIEYAIENDRKSVTLVHKGNIMKFTEGAFRDWGYELAKKEF 253 (416)
T ss_pred cccccc----CccccccccccEEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEECCCccccchhhHHHHHHHHHHHHH
Confidence 211111 11122334445667788999999999999999999995 5799999999999999999999999998668
Q ss_pred hcccCC-------------CCeeEehhhHHHHHHHHHHCCCCc-EEEeCCchhhHHHhhhhhccCCccccCCCCCCCCC
Q 016961 313 RQKFEE-------------HSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPN 377 (380)
Q Consensus 313 ~~~~~~-------------p~I~~e~~lIDa~a~~LVk~P~~F-ViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~p~ 377 (380)
+.+|++ |+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+ +|+|++++
T Consensus 254 ~~~~~~~~lw~~~~~p~~~p~I~~~~~~vDa~~~~lv~~P~~fDVivt~NlfGDILSDlaa~l~GslGla-pSanig~~ 331 (416)
T TIGR00183 254 GAECITWGLWDKYKNPNPGKEIVIKDRIADAFLQQILTRPDEYDVIATMNLNGDYISDALAAQVGGIGIA-PGANIGDE 331 (416)
T ss_pred hHhhhhccccccccCcccCCceeEeehhHHHHHHHHhhCcccCcEEEEcCcccchhhHHHHHhcCchhhc-ceeeeCCC
Confidence 655554 499999999999999999999999 99999999999999999999999999 78999876
No 17
>PRK06451 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=7.3e-74 Score=578.78 Aligned_cols=270 Identities=20% Similarity=0.170 Sum_probs=228.8
Q ss_pred EEEEcCCccHHHHHHHHHHHHhcC-------CCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcch
Q 016961 88 IVEMDGDEMTRIIWQMIKDKLIFP-------YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETR 160 (380)
Q Consensus 88 IvvlpGDgIGpEV~~~~~~~l~~~-------g~~i~~~~~d~G~~~~d~tG~~lp~etleaik~~da~lkGa~~tP~~~~ 160 (380)
|++||||||||||+++++++|.+. +++|+|+++++|.++|++||+++|++++++|+++|++||||++||.+
T Consensus 26 I~vipGDGIGpEV~~aa~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~GavgtP~~-- 103 (412)
T PRK06451 26 ILYVEGDGIGPEITHAAMKVINKAVEKAYGSDREIKWVEVLAGDKAEKLTGNRFPKESEELIEKYRVLLKGPLETPIG-- 103 (412)
T ss_pred EEEecCCcccHHHHHHHHHHHHHHHHhccCCCCceEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECcccCCCC--
Confidence 999999999999999999988521 26899999999999999999999999999999999999999999942
Q ss_pred hhhhcccccCCCCchhHhhhcCCeEEeeecccCCCCCCCCCC----CCCEEEEeeccCccccccceeecCCCceee-eec
Q 016961 161 MKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW----KKPICIGRHAFGDQYRATDTVIKGPGKLKM-VFD 235 (380)
Q Consensus 161 ~~~~~L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~~~~----~~divIvREnteG~Y~g~e~~~~~~g~~e~-~~~ 235 (380)
++|+|+|++||++||||+|+||| +.+|++.+++ ++|||||||||||+|+|.++....++..+. .|.
T Consensus 104 -------~~~~s~~l~LRk~ldLyaNvRPv--k~~pgl~sp~~~~~~iD~vIvREnTeG~Y~g~~~~~~~~~~~~~~~~~ 174 (412)
T PRK06451 104 -------KGWKSINVAIRLMLDLYANIRPV--KYIPGIESPLKNPEKIDLIIFRENTDDLYRGIEYPYDSEEAKKIRDFL 174 (412)
T ss_pred -------cCCcChhHHHHHHcCCeEeecee--ecCCCCCCcccCcCCccEEEEEeccCCeeecccccccccccccccccc
Confidence 35899999999999999999997 6788877654 579999999999999999764322111000 011
Q ss_pred CC-CCCCcceeeecccCCcceeeecccCHHHHHHHHHHHHHHHhcCC-CCEEEEeCCCcccccchhHHHHHHHHHHHhhh
Q 016961 236 PE-DGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEERWR 313 (380)
Q Consensus 236 ~~-~g~~~~~~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk-~~Vt~v~KaNVLk~tdglf~~i~~eVa~~eY~ 313 (380)
.. .+. +...+.+.+..+||+.+++||+|+||+||++|+ ++||+|||+||||.+||+|+++|+||+++||.
T Consensus 175 ~~~~~~--------~~~~~~a~~~~~~t~~~~eRIar~AF~~A~~r~~kkVt~v~KaNVlk~t~glf~~~~~eva~~eyp 246 (412)
T PRK06451 175 RKELGV--------EVEDDTGIGIKLISKFKTQRIARMAIKYAIDHKRKKVTIMHKGNVMKYTEGAFREWAYEVALKEFR 246 (412)
T ss_pred cccccc--------ccccceecceeeeeHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccccchhhHHHHHHHHHHHhCC
Confidence 11 000 001122446677999999999999999999996 57999999999999999999999999976784
Q ss_pred c--------------ccCCCCeeEehhhHHHHHHHHHHCCCCc-EEEeCCchhhHHHhhhhhccCCccccCCCCCCCCC
Q 016961 314 Q--------------KFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPN 377 (380)
Q Consensus 314 ~--------------~~~~p~I~~e~~lIDa~a~~LVk~P~~F-ViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~p~ 377 (380)
+ +|++|+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+ +|+|++|+
T Consensus 247 d~~~~~~~~~~~y~~~~~~~~I~~~~~~vDa~~~~Lv~~P~~FDVivt~NlfGDILSDlaa~l~GglGl~-pSanig~~ 324 (412)
T PRK06451 247 DYVVTEEEVTKNYNGVPPSGKVIINDRIADNMFQQIIIRPDEYDIILAPNVNGDYISDAAGALVGNIGML-GGANIGDT 324 (412)
T ss_pred cccccccchhhccccccccCceEEEeeeHHHHHHHHhcCcccCcEEEEcCcccchhhHHHHHhcCchhhc-ceeeeCCC
Confidence 3 5666689999999999999999999999 99999999999999999999999999 77999987
No 18
>TIGR02089 TTC tartrate dehydrogenase. Tartrate dehydrogenase catalyzes the oxidation of both meso- and (+)-tartrate as well as a D-malate. These enzymes are closely related to the 3-isopropylmalate and isohomocitrate dehydrogenases found in TIGR00169 and TIGR02088, respectively.
Probab=100.00 E-value=7.8e-74 Score=569.99 Aligned_cols=255 Identities=15% Similarity=0.123 Sum_probs=222.7
Q ss_pred ccEEEEcCCccHHHHHHHHHHHHhcC-----CCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcch
Q 016961 86 NPIVEMDGDEMTRIIWQMIKDKLIFP-----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETR 160 (380)
Q Consensus 86 ~~IvvlpGDgIGpEV~~~~~~~l~~~-----g~~i~~~~~d~G~~~~d~tG~~lp~etleaik~~da~lkGa~~tP~~~~ 160 (380)
++|++||||||||||+++++++|.+. +++|+|+++++|++++++||+++|++++++|+++|++||||+++|....
T Consensus 4 ~~I~vipGDGIGpEV~~aa~~Vl~a~~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~k~~da~L~G~vg~p~~~~ 83 (352)
T TIGR02089 4 YRIAAIPGDGIGKEVVAAALQVLEAAAKRHGGFSLHFTEFPWSCDYYKEHGKMMPEDGLEKLKKFDAIFLGAVGWPALVP 83 (352)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHHHHhhcCCcceEEEEECCcHHHHHHhCCCCCHHHHHHHHhCCEEEEecccCCCCCC
Confidence 57999999999999999999988532 5899999999999999999999999999999999999999999995210
Q ss_pred hhhhcccccCCCCchhHhhhcCCeEEeeecccCCCCCCCCCC------CCCEEEEeeccCccccccceeecCCCceeeee
Q 016961 161 MKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW------KKPICIGRHAFGDQYRATDTVIKGPGKLKMVF 234 (380)
Q Consensus 161 ~~~~~L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~~~~------~~divIvREnteG~Y~g~e~~~~~~g~~e~~~ 234 (380)
. ....+++|++|||+||||+|+||| +.+|++.+++ +.|+|||||||||+|+|.+.... +|+
T Consensus 84 --~---~~~~~~~~l~LRk~ldLyaNvRP~--~~~~g~~sp~k~~~~~~iD~vivREnteG~Y~G~~~~~~-~~~----- 150 (352)
T TIGR02089 84 --D---HISLWGLLLKIRREFDQYANVRPA--KLLPGVTSPLRNCGPGDFDFVVVRENSEGEYSGVGGRIH-RGT----- 150 (352)
T ss_pred --C---ccCchhhHHHHHHHcCCeEEEEEe--ecCCCCCCccccccCCCCCEEEEEecCCccccccccccc-CCc-----
Confidence 0 012345699999999999999998 5677765543 47999999999999999753221 111
Q ss_pred cCCCCCCcceeeecccCCcceeeecccCHHHHHHHHHHHHHHHhcCCCCEEEEeCCCcccccchhHHHHHHHHHHHhhhc
Q 016961 235 DPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQ 314 (380)
Q Consensus 235 ~~~~g~~~~~~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk~~Vt~v~KaNVLk~tdglf~~i~~eVa~~eY~~ 314 (380)
.++.+.++++|||+++|||+|+||+||++|+++||++||+|||+.++|+|+++|+||++ +|
T Consensus 151 ----------------~~~~a~~~~~~tr~~~eRi~r~Af~~A~~rr~kVt~v~KaNvl~~t~~lf~~~~~eva~-~y-- 211 (352)
T TIGR02089 151 ----------------DEEVATQNAIFTRKGVERIMRFAFELAQKRRKHLTSATKSNGIRHSMPFWDEVFAEVAA-EY-- 211 (352)
T ss_pred ----------------cceeEEEeEEecHHHHHHHHHHHHHHHHHcCCCEEEEeCCcchhhhhHHHHHHHHHHHh-hC--
Confidence 01124567779999999999999999999977899999999999999999999999987 89
Q ss_pred ccCCCCeeEehhhHHHHHHHHHHCCCCc-EEEeCCchhhHHHhhhhhccCCccccCCCCCCCCC
Q 016961 315 KFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPN 377 (380)
Q Consensus 315 ~~~~p~I~~e~~lIDa~a~~LVk~P~~F-ViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~p~ 377 (380)
|+|+++|+|||++|||||++|++| ||||+|||||||||++|+++|||||+ ||+|++|+
T Consensus 212 ----p~v~~~~~~vD~~~~~lv~~P~~fDVivt~NlfGDILSD~aa~l~GglGl~-psanig~~ 270 (352)
T TIGR02089 212 ----PDVEWDSYHIDALAARFVLKPETFDVIVASNLFGDILSDLGAALMGSLGVA-PSANINPE 270 (352)
T ss_pred ----CCceEeeehHHHHHHHHhcChhhCcEEEecccchhhhhHHHHHhcCCcccc-ceEEecCC
Confidence 999999999999999999999999 99999999999999999999999999 88999875
No 19
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type. The NADP-dependent IDH of Thermus aquaticus thermophilus strain HB8 resembles these NAD-dependent IDH, except for the residues involved in cofactor specificity, much more closely than it resembles other prokaryotic NADP-dependent IDH, including that of Thermus aquaticus strain YT1.
Probab=100.00 E-value=1.6e-73 Score=564.66 Aligned_cols=246 Identities=17% Similarity=0.164 Sum_probs=221.5
Q ss_pred ccEEEEcCCccHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcchhhhhc
Q 016961 86 NPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFG 165 (380)
Q Consensus 86 ~~IvvlpGDgIGpEV~~~~~~~l~~~g~~i~~~~~d~G~~~~d~tG~~lp~etleaik~~da~lkGa~~tP~~~~~~~~~ 165 (380)
++|++||||||||||+++++++|.+.+++|+|+++++|++ +.+|+++|+|++++|+++|++||||+++|...
T Consensus 4 ~~i~vlpGDGIGpEv~~~a~~vl~~~~~~i~~~~~~~G~~--~~~g~~lp~~~l~~~~~~da~l~Gav~~p~~~------ 75 (333)
T TIGR00175 4 YTVTLIPGDGIGPEISGSVKKIFRAANVPIEFEEIDVSPQ--TDGKTEIPDEAVESIKRNKVALKGPLETPIGK------ 75 (333)
T ss_pred EEEEEECCCcccHHHHHHHHHHHHhCCCceEEEEEecChh--hccCCcCCHHHHHHHHHCCEEEEcccCCcccc------
Confidence 5799999999999999999999987799999999999997 67899999999999999999999999998531
Q ss_pred ccccCCCCchhHhhhcCCeEEeeecccCCCCCCCCCC-CCCEEEEeeccCccccccceeecCCCceeeeecCCCCCCcce
Q 016961 166 LKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW-KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVE 244 (380)
Q Consensus 166 L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~~~~-~~divIvREnteG~Y~g~e~~~~~~g~~e~~~~~~~g~~~~~ 244 (380)
..++|+|++||++||||+|+||+ +.+|++.+++ +.|++||||||||+|+|.++.. .+++
T Consensus 76 --~~~~s~~~~lR~~ldlyanvRP~--k~~pg~~~~~~~iD~vivREnteG~Y~g~~~~~-~~~~--------------- 135 (333)
T TIGR00175 76 --GGHRSLNVALRKELDLYANVVHC--KSLPGFKTRHEDVDIVIIRENTEGEYSGLEHES-VPGV--------------- 135 (333)
T ss_pred --ccccchhHHHHHHcCCEEEeEEe--cCCCCCCCCCCCcCEEEEEEeCCCcccceeEec-cCCe---------------
Confidence 12788999999999999999997 7788877654 5799999999999999987542 1111
Q ss_pred eeecccCCcceeeecccCHHHHHHHHHHHHHHHhcCC-CCEEEEeCCCcccccchhHHHHHHHHHHHhhhcccCCCCeeE
Q 016961 245 LDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWY 323 (380)
Q Consensus 245 ~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk-~~Vt~v~KaNVLk~tdglf~~i~~eVa~~eY~~~~~~p~I~~ 323 (380)
+.++.+|||++++||+|+||+||++|+ ++||++||+|||+.+||+|+++|+|+++ +| |+|++
T Consensus 136 ----------~~~~~~~Tr~~~eRi~r~Af~~A~~r~~k~Vt~v~KaNvl~~t~glf~~~~~eva~-~y------p~v~~ 198 (333)
T TIGR00175 136 ----------VESLKVITRDKSERIARYAFEYARKNGRKKVTAVHKANIMKLADGLFLNVCREVAK-EY------PDITF 198 (333)
T ss_pred ----------EEEEEecCHHHHHHHHHHHHHHHHhcCCCeEEEEECCccchhhHHHHHHHHHHHHH-HC------CCCee
Confidence 224456899999999999999999997 4599999999999999999999999998 79 99999
Q ss_pred ehhhHHHHHHHHHHCCCCc-EEEeCCchhhHHHhhhhhccCCccccCCCCCCCCC
Q 016961 324 EHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPN 377 (380)
Q Consensus 324 e~~lIDa~a~~LVk~P~~F-ViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~p~ 377 (380)
+|+|||+|+||||++|++| ||||+|||||||||++|+++|||||+ +|+|++|+
T Consensus 199 ~~~~vDa~~~~lv~~P~~fdViVt~NlfGDILSDlaa~l~GslGl~-pSanig~~ 252 (333)
T TIGR00175 199 ESMIVDNTCMQLVSRPSQFDVMVMPNLYGNILSNLGAGLVGGPGLV-PGANIGRD 252 (333)
T ss_pred eeeeHHHHHHHHhcCcccccEEEEccccchhhhHHHHHhcCCcccC-ceeEEcCC
Confidence 9999999999999999999 99999999999999999999999999 56899986
No 20
>PLN02329 3-isopropylmalate dehydrogenase
Probab=100.00 E-value=1.3e-73 Score=575.12 Aligned_cols=259 Identities=16% Similarity=0.074 Sum_probs=222.1
Q ss_pred ccccEEEEcCCccHHHHHHHHHHHHhcC----CCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcc
Q 016961 84 VQNPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDET 159 (380)
Q Consensus 84 ~~~~IvvlpGDgIGpEV~~~~~~~l~~~----g~~i~~~~~d~G~~~~d~tG~~lp~etleaik~~da~lkGa~~tP~~~ 159 (380)
+.++|++||||||||||+++++++|.+. +++|+|+++++|+++++++|+++|++++++|+++|++||||+++|...
T Consensus 45 ~~~~IavipGDGIGPEV~~aa~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lP~~tl~~~~~~DaiL~Gavg~p~~~ 124 (409)
T PLN02329 45 KRYNIALLPGDGIGPEVISVAKNVLQKAGSLEGLEFDFQEMPVGGAALDLVGVPLPEETFTAAKQSDAILLGAIGGYKWD 124 (409)
T ss_pred ceEEEEEECCCcccHHHHHHHHHHHHHHHhhcCCceEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECcccCCCCC
Confidence 3578999999999999999999988532 689999999999999999999999999999999999999999998421
Q ss_pred hhhhhcccccCCCCchhHhhhcCCeEEeeecccCCCCCCCC--C------CCCCEEEEeeccCccccccceeecCCCcee
Q 016961 160 RMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVP--G------WKKPICIGRHAFGDQYRATDTVIKGPGKLK 231 (380)
Q Consensus 160 ~~~~~~L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~~--~------~~~divIvREnteG~Y~g~e~~~~~~g~~e 231 (380)
.. ...+ . ..++|++||++||||+|+||| +.+|++.. + -++|+|||||||||+|+|.++.....
T Consensus 125 ~~-~~~~-~-~e~~ll~LRk~ldLyaNvRPv--r~~pg~~~~splk~~~~~~iD~vIVREnTEG~Y~G~~~~~~~~---- 195 (409)
T PLN02329 125 KN-EKHL-R-PEMALFYLRRDLKVFANLRPA--TVLPQLVDASTLKKEVAEGVDMMIVRELTGGIYFGEPRGITIN---- 195 (409)
T ss_pred CC-cccc-c-ccccHHHHHHHcCCeEeeeee--eccCCCCCcCcccccccCCceEEEEEECCCCeecCCCcceecc----
Confidence 00 0000 0 125699999999999999998 56676543 2 25799999999999999975321000
Q ss_pred eeecCCCCCCcceeeecccCCcceeeecccCHHHHHHHHHHHHHHHhcCCCCEEEEeCCCcccccchhHHHHHHHHHHHh
Q 016961 232 MVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEER 311 (380)
Q Consensus 232 ~~~~~~~g~~~~~~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk~~Vt~v~KaNVLk~tdglf~~i~~eVa~~e 311 (380)
+ .+ .+.+.++++|||+++|||+|+||+||++|+++||++||+|||+ ++++|+++|+|||+ +
T Consensus 196 ----~-~~------------~~~a~~~~~iTr~~~eRI~r~AFe~A~~r~~kVT~v~KaNVl~-t~~lf~~~~~evA~-e 256 (409)
T PLN02329 196 ----E-NG------------EEVGVSTEIYAAHEIDRIARVAFETARKRRGKLCSVDKANVLD-ASILWRKRVTALAS-E 256 (409)
T ss_pred ----c-CC------------ceeEEEeEEecHHHHHHHHHHHHHHHHHcCCeEEEEECCCCcc-chHHHHHHHHHHHh-h
Confidence 0 00 1124567789999999999999999999988999999999999 99999999999998 8
Q ss_pred hhcccCCCCeeEehhhHHHHHHHHHHCCCCc-EEEeCCchhhHHHhhhhhccCCccccCCCCCCCCC
Q 016961 312 WRQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPN 377 (380)
Q Consensus 312 Y~~~~~~p~I~~e~~lIDa~a~~LVk~P~~F-ViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~p~ 377 (380)
| |+|+++|+|||++|||||++|++| ||||+|||||||||++|+++|||||+ ||+|++++
T Consensus 257 y------PdV~~~~~~VDa~a~~LV~~P~~FDVIVt~NLfGDILSDlaa~l~GglGla-PSanig~~ 316 (409)
T PLN02329 257 Y------PDVELSHMYVDNAAMQLIRDPKQFDTIVTNNIFGDILSDEASMITGSIGML-PSASLGES 316 (409)
T ss_pred C------CCcccchhHHHHHHHHHhcCchhCCEEEEcCcccccccHHHHHhcCCcccC-ceeecCCC
Confidence 9 999999999999999999999999 99999999999999999999999999 89999986
No 21
>PLN00123 isocitrate dehydrogenase (NAD+)
Probab=100.00 E-value=3.2e-73 Score=564.93 Aligned_cols=242 Identities=16% Similarity=0.150 Sum_probs=218.1
Q ss_pred ccEEEEcCCccHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcchhhhhc
Q 016961 86 NPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFG 165 (380)
Q Consensus 86 ~~IvvlpGDgIGpEV~~~~~~~l~~~g~~i~~~~~d~G~~~~d~tG~~lp~etleaik~~da~lkGa~~tP~~~~~~~~~ 165 (380)
++|++||||||||||+++++++|.+.+++|+|+++++|++ |+++|++++++|+++|++||||+++|.+
T Consensus 31 ~~I~vipGDGIGpEV~~~a~~vl~a~~~~i~~~~~~~G~~-----~~~lp~~~l~~~~~~da~L~Gavg~p~~------- 98 (360)
T PLN00123 31 RAVTLIPGDGIGPLVTGAVEQVMEAMHAPVYFERYEVHGD-----MKKVPEEVLESIRRNKVCLKGGLATPVG------- 98 (360)
T ss_pred eEEEEECCCCccHHHHHHHHHHHHhCCCceEEEEEccCCC-----CccCCHHHHHHHHHCCEEEEccccCCCC-------
Confidence 6899999999999999999999987799999999999986 5789999999999999999999999942
Q ss_pred ccccCCCCchhHhhhcCCeEEeeecccCCCCCCCCCC-CCCEEEEeeccCccccccceeecCCCceeeeecCCCCCCcce
Q 016961 166 LKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW-KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVE 244 (380)
Q Consensus 166 L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~~~~-~~divIvREnteG~Y~g~e~~~~~~g~~e~~~~~~~g~~~~~ 244 (380)
.+.+|+|+.||++||||+|+||| +.+||+..++ ++|+|||||||||+|+|.++... +|+
T Consensus 99 --~~~~s~~l~LR~~ldLyaNvRP~--k~~pg~~~~~~~iD~viVREnteG~Y~g~~~~~~-~g~--------------- 158 (360)
T PLN00123 99 --GGVSSLNVQLRKELDLFASLVNC--FNLPGLPTRHENVDIVVIRENTEGEYSGLEHEVV-PGV--------------- 158 (360)
T ss_pred --cCccchHHHHHHHcCCEEEEEEe--ecCCCCCCccCCCCEEEEEeCCCceeccceeecC-CCc---------------
Confidence 23567899999999999999997 6788877654 58999999999999999865421 111
Q ss_pred eeecccCCcceeeecccCHHHHHHHHHHHHHHHhcCC-CCEEEEeCCCcccccchhHHHHHHHHHHHhhhcccCCCCeeE
Q 016961 245 LDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWY 323 (380)
Q Consensus 245 ~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk-~~Vt~v~KaNVLk~tdglf~~i~~eVa~~eY~~~~~~p~I~~ 323 (380)
+.++.+|||+++|||+|+||+||++|+ ++||++||+|||+.+||+|+++|+||++ || |+|++
T Consensus 159 ----------~~~~~v~Tr~~~eRIar~AF~~A~~r~rkkVt~v~KaNvl~~t~glf~~~~~eva~-ey------PdV~~ 221 (360)
T PLN00123 159 ----------VESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVAK-KY------PGIKY 221 (360)
T ss_pred ----------eEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCccccchhhHHHHHHHHHHh-hC------CCceE
Confidence 224456899999999999999999985 5799999999999999999999999998 89 99999
Q ss_pred ehhhHHHHHHHHHHCCCCc-EEEeCCchhhHHHhhhhhccCCccccCCCCCCCCC
Q 016961 324 EHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPN 377 (380)
Q Consensus 324 e~~lIDa~a~~LVk~P~~F-ViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~p~ 377 (380)
+|+|||+||||||++|++| ||||+|||||||||++|+++|||||+ ||+|++|+
T Consensus 222 ~~~~VDa~~~~Lv~~P~~fDViVt~NlfGDILSDlaa~l~GglGl~-pSanig~~ 275 (360)
T PLN00123 222 NEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVM-PGGNVGAD 275 (360)
T ss_pred eeeeHHHHHHHHhhCcccCcEEEEcCcccchhhhHHHHhcCCcCcc-ceEeeCCC
Confidence 9999999999999999999 99999999999999999999999999 88999876
No 22
>PRK09222 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=8.6e-73 Score=578.26 Aligned_cols=248 Identities=19% Similarity=0.180 Sum_probs=225.5
Q ss_pred cccEEEEcCCccHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcC-CCCcHHHHHHHHhcCeeeecCCCCCCcchhhh
Q 016961 85 QNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATD-DKVTVESAEATLKYNVAIKCATITPDETRMKE 163 (380)
Q Consensus 85 ~~~IvvlpGDgIGpEV~~~~~~~l~~~g~~i~~~~~d~G~~~~d~tG-~~lp~etleaik~~da~lkGa~~tP~~~~~~~ 163 (380)
.++|++||||||||||+++++++|.+.+++|+|+++++|.++|+++| +++|++++++|+++|++||||++||..
T Consensus 4 ~~~I~vipGDGIGPEV~~a~~~VL~a~~~~i~~~~~~~G~~~~~~~g~~~lp~~~~~~i~~~da~LkG~i~tP~~----- 78 (482)
T PRK09222 4 KTPITVAYGDGIGPEIMEAVLKILEAAGAPLEIETIEIGEKVYKKGWTSGISPSAWESIRRTKVLLKAPITTPQG----- 78 (482)
T ss_pred cceEEEECCCcccHHHHHHHHHHHHhcCCceEEEEEcCCHHHHHhcCCCCCCHHHHHHHHHCCEEEEccccCCCc-----
Confidence 47899999999999999999999988899999999999999999987 799999999999999999999999952
Q ss_pred hcccccCCCCchhHhhhcCCeEEeeecccCCC-CCCCCCC-CCCEEEEeeccCccccccceeecCCCceeeeecCCCCCC
Q 016961 164 FGLKSMWRSPNGTIRNILNGTVFREPILCQNI-PRIVPGW-KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTG 241 (380)
Q Consensus 164 ~~L~~~~~spn~~LRk~ldlyanvRPi~~~~l-p~~~~~~-~~divIvREnteG~Y~g~e~~~~~~g~~e~~~~~~~g~~ 241 (380)
.+++|+|++||+.||||||+||| +.+ |++.+++ +.|+|||||||||+|+|.++... ++
T Consensus 79 ----~~~~s~~~~LRk~ldLYaNvRP~--r~~~pgv~~~~~~iD~vIVRENtEG~Y~G~e~~~~-~~------------- 138 (482)
T PRK09222 79 ----GGYKSLNVTLRKTLGLYANVRPC--VSYHPFVETKHPNLDVVIIRENEEDLYAGIEHRQT-PD------------- 138 (482)
T ss_pred ----cCccchHHHHHHHcCCeEEeeeE--EecCCCCCCCCCCcCEEEEEeccCCeeccceeecC-CC-------------
Confidence 34678899999999999999997 677 7776554 57999999999999999876421 11
Q ss_pred cceeeecccCCcceeeecccCHHHHHHHHHHHHHHHhcCC-CCEEEEeCCCcccccchhHHHHHHHHHHHhhhcccCCCC
Q 016961 242 PVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHS 320 (380)
Q Consensus 242 ~~~~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk-~~Vt~v~KaNVLk~tdglf~~i~~eVa~~eY~~~~~~p~ 320 (380)
.+..+.+|||+++|||+|+||+||++|+ ++||++||+||||.+||+|+++|+|||+ +| |+
T Consensus 139 ------------~~~~~k~iTr~~~eRI~r~AFe~A~~r~rkkVt~v~KaNVmk~tdglf~~v~~eva~-ey------Pd 199 (482)
T PRK09222 139 ------------VYQCLKLISRPGSEKIIRYAFEYARANGRKKVTCLTKDNIMKLTDGLFHKVFDEIAK-EY------PD 199 (482)
T ss_pred ------------eeeEeeccCHHHHHHHHHHHHHHHHhcCCCeEEEEECCCcccccchHHHHHHHHHHh-hC------CC
Confidence 1224455899999999999999999996 5799999999999999999999999998 89 99
Q ss_pred eeEehhhHHHHHHHHHHCCCCc-EEEeCCchhhHHHhhhhhccCCccccCCCCCCCCC
Q 016961 321 IWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPN 377 (380)
Q Consensus 321 I~~e~~lIDa~a~~LVk~P~~F-ViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~p~ 377 (380)
|+++|+|||++|||||++|++| ||||+|||||||||++|+++||+||+ +|+|++++
T Consensus 200 I~~~~~~VDa~a~~Lv~~P~~FDVIVt~NLfGDILSDlaa~l~GslGla-pSanig~~ 256 (482)
T PRK09222 200 IEAEHYIVDIGAARLATNPENFDVIVTPNLYGDILSDIAAEISGSVGLA-GSANIGEE 256 (482)
T ss_pred ceEeeeeHHHHHHHHhcCcccceEEEEcccccchhhHHHHHhcCCcccc-cceecCCC
Confidence 9999999999999999999999 99999999999999999999999999 89999987
No 23
>TIGR00169 leuB 3-isopropylmalate dehydrogenase. This model will not find all isopropylmalate dehydrogenases; the enzyme from Sulfolobus sp. strain 7 is more similar to mitochondrial NAD-dependent isocitrate dehydrogenases than to other known isopropylmalate dehydrogenases and was omitted to improve the specificity of the model. It scores below the cutoff and below some enzymes known not to be isopropylmalate dehydrogenase.
Probab=100.00 E-value=9.7e-73 Score=561.58 Aligned_cols=255 Identities=16% Similarity=0.098 Sum_probs=218.8
Q ss_pred cEEEEcCCccHHHHHHHHHHHHhcC----CCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcchhh
Q 016961 87 PIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMK 162 (380)
Q Consensus 87 ~IvvlpGDgIGpEV~~~~~~~l~~~----g~~i~~~~~d~G~~~~d~tG~~lp~etleaik~~da~lkGa~~tP~~~~~~ 162 (380)
+|++||||||||||+++++++|.+. +++|+|+++++|.+++++||+++|++++++|+++|++||||+++|......
T Consensus 1 ~i~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~l~G~v~~p~~~~~~ 80 (349)
T TIGR00169 1 KIAVLPGDGIGPEITAEALKVLKAVAERFGLKFEFEEHLIGGAAIDATGQPLPEETLKACKEADAVLLGAVGGPKWDNLP 80 (349)
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHHhhcCCceEEEEEeCCHHHHHHHCCCCCHHHHHHHHHCCEEEECcccCCCCCCCC
Confidence 5899999999999999999988532 789999999999999999999999999999999999999999998421000
Q ss_pred hhcccccCCCCchhHhhhcCCeEEeeecccCCCCCCCC--C------CCCCEEEEeeccCccccccceeecCCCceeeee
Q 016961 163 EFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVP--G------WKKPICIGRHAFGDQYRATDTVIKGPGKLKMVF 234 (380)
Q Consensus 163 ~~~L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~~--~------~~~divIvREnteG~Y~g~e~~~~~~g~~e~~~ 234 (380)
... ..+++ |++||++||||+|+||| +.+||+.. + -++|+|||||||||+|+|.++.....+
T Consensus 81 -~~~-~~~~~-~~~LR~~ldlyanvRP~--r~~~g~~~~~p~~~~~~~~iD~vivREntEG~Y~g~~~~~~~~~------ 149 (349)
T TIGR00169 81 -RDQ-RPEQG-LLKLRKSLDLFANLRPA--KVFPSLEDLSPLKEEIAKGVDFVVVRELTGGIYFGEPKGRFGAG------ 149 (349)
T ss_pred -ccc-cchhh-HHHHHHHcCCeEEEEEe--eccCCCCccCCCcccccCCceEEEEeeccCCeecCCCccccCCC------
Confidence 000 11233 89999999999999998 66776543 1 257999999999999999864211100
Q ss_pred cCCCCCCcceeeecccCCcceeeecccCHHHHHHHHHHHHHHHhcCCCCEEEEeCCCcccccchhHHHHHHHHHHHhhhc
Q 016961 235 DPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQ 314 (380)
Q Consensus 235 ~~~~g~~~~~~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk~~Vt~v~KaNVLk~tdglf~~i~~eVa~~eY~~ 314 (380)
.++.+.++.+|||+++|||+|+||+||++|+++||++||+|||| ++|+|+++|+||++ +|
T Consensus 150 ----------------~~~~a~~~~~~Tr~~~eRI~r~AF~~A~~r~~~Vt~v~KaNvlk-t~glf~~~~~eva~-~y-- 209 (349)
T TIGR00169 150 ----------------GEGEAWDTEVYTKPEIERIARVAFEMARKRRKKVTSVDKANVLE-SSRLWRKTVEEIAK-EY-- 209 (349)
T ss_pred ----------------CcceEEEEEEeeHHHHHHHHHHHHHHHHHcCCcEEEEECCcccc-hhHHHHHHHHHHHh-hC--
Confidence 00123456668999999999999999999988999999999999 99999999999998 89
Q ss_pred ccCCCCeeEehhhHHHHHHHHHHCCCCc-EEEeCCchhhHHHhhhhhccCCccccCCCCCCCCC
Q 016961 315 KFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPN 377 (380)
Q Consensus 315 ~~~~p~I~~e~~lIDa~a~~LVk~P~~F-ViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~p~ 377 (380)
|+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+ +|+|++|+
T Consensus 210 ----P~I~~~~~~vDa~~~~Lv~~P~~fDViv~~NlfGDILSDlaa~l~GglGla-pSanig~~ 268 (349)
T TIGR00169 210 ----PDVELEHQYIDNAAMQLVKSPTQFDVVVTGNIFGDILSDEASVIPGSLGML-PSASLGSD 268 (349)
T ss_pred ----CCceEEeeeHHHHHHHHHhCccCceEEEEcCcccchhhHHHHHhcCCCCCC-ceEEECCC
Confidence 999999999999999999999999 99999999999999999999999999 78999987
No 24
>PRK00772 3-isopropylmalate dehydrogenase; Provisional
Probab=100.00 E-value=9.3e-73 Score=563.08 Aligned_cols=257 Identities=18% Similarity=0.100 Sum_probs=222.7
Q ss_pred cccEEEEcCCccHHHHHHHHHHHHhcC----CCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcch
Q 016961 85 QNPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETR 160 (380)
Q Consensus 85 ~~~IvvlpGDgIGpEV~~~~~~~l~~~----g~~i~~~~~d~G~~~~d~tG~~lp~etleaik~~da~lkGa~~tP~~~~ 160 (380)
.++|++||||||||||+++++++|.+. +++|+|+++++|.+++++||+++|++++++|+++|++||||+++|....
T Consensus 2 ~~~I~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gav~~p~~~~ 81 (358)
T PRK00772 2 TYKIAVLPGDGIGPEVMAEAVKVLDAVAEKFGFDFEFEEALVGGAAIDAHGVPLPEETLEACRAADAVLLGAVGGPKWDN 81 (358)
T ss_pred ceEEEEECCCcccHHHHHHHHHHHHHHHhhcCCceEEEEecCcHHHHHHHCCCCCHHHHHHHHHCCEEEECccCCCCCCC
Confidence 368999999999999999999988633 7899999999999999999999999999999999999999999995211
Q ss_pred hhhhcccccCCCCchhHhhhcCCeEEeeecccCCCCCCCC--CC------CCCEEEEeeccCccccccceeecCCCceee
Q 016961 161 MKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVP--GW------KKPICIGRHAFGDQYRATDTVIKGPGKLKM 232 (380)
Q Consensus 161 ~~~~~L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~~--~~------~~divIvREnteG~Y~g~e~~~~~~g~~e~ 232 (380)
++. ...+.+| |++||++||||+|+||| +.+||+.. ++ +.|+|||||||||+|+|.++... ++.
T Consensus 82 ~~~--~~~~~~~-~~~LR~~ldlyanvRP~--r~~pg~~~~~plk~~~~~~iD~vivREntEG~Y~g~~~~~~-~~~--- 152 (358)
T PRK00772 82 LPP--DVRPERG-LLALRKELGLFANLRPA--KLYPGLADASPLKPEIVAGLDILIVRELTGGIYFGEPRGRE-GLG--- 152 (358)
T ss_pred CCc--cCCChhh-HHHHHHHcCCeEEEeEe--ecCCCCCCcCCCcccccCCccEEEEecccCCeecCCccccc-CCC---
Confidence 100 0023455 89999999999999998 66777653 22 58999999999999999864321 110
Q ss_pred eecCCCCCCcceeeecccCCcceeeecccCHHHHHHHHHHHHHHHhcCCCCEEEEeCCCcccccchhHHHHHHHHHHHhh
Q 016961 233 VFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERW 312 (380)
Q Consensus 233 ~~~~~~g~~~~~~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk~~Vt~v~KaNVLk~tdglf~~i~~eVa~~eY 312 (380)
+ .+.+.+..++|+++++||+|+||+||++|+++||++||+|||| ++|+|+++|+||++ ||
T Consensus 153 ------~------------~~~a~~~~~iTr~~~~Ri~r~Af~~A~~r~~~Vt~v~KaNvl~-~~glf~~~~~eva~-ey 212 (358)
T PRK00772 153 ------G------------EERAFDTMVYTREEIERIARVAFELARKRRKKVTSVDKANVLE-SSRLWREVVTEVAK-EY 212 (358)
T ss_pred ------C------------ceeEEEEEEeeHHHHHHHHHHHHHHHHHcCCcEEEEECccccc-cchHHHHHHHHHHh-HC
Confidence 0 1124466778999999999999999999988999999999999 89999999999998 89
Q ss_pred hcccCCCCeeEehhhHHHHHHHHHHCCCCc-EEEeCCchhhHHHhhhhhccCCccccCCCCCCCCC
Q 016961 313 RQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPN 377 (380)
Q Consensus 313 ~~~~~~p~I~~e~~lIDa~a~~LVk~P~~F-ViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~p~ 377 (380)
|+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+ ||+|++|+
T Consensus 213 ------p~i~~~~~~vDa~~~~lv~~P~~fDViv~~NlfGDIlSDlaa~l~GglGl~-psanig~~ 271 (358)
T PRK00772 213 ------PDVELSHMYVDNAAMQLVRNPKQFDVIVTENLFGDILSDEAAMLTGSLGML-PSASLGES 271 (358)
T ss_pred ------CCceEEEEeHHHHHHHHhhCcccCeEEeecCcccccccHHHHHhcCCCCCC-cceEeCCC
Confidence 999999999999999999999999 99999999999999999999999999 88999986
No 25
>TIGR02924 ICDH_alpha isocitrate dehydrogenase. This family of mainly alphaproteobacterial enzymes is a member of the isocitrate/isopropylmalate dehydrogenase superfamily described by pfam00180. Every member of the seed of this model appears to have a TCA cycle lacking only a determined isocitrate dehydrogenase. The precise identity of the cofactor (NADH -- 1.1.1.41 vs. NADPH -- 1.1.1.42) is unclear.
Probab=100.00 E-value=1.8e-72 Score=574.34 Aligned_cols=246 Identities=21% Similarity=0.181 Sum_probs=222.7
Q ss_pred cEEEEcCCccHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcC-CCCcHHHHHHHHhcCeeeecCCCCCCcchhhhhc
Q 016961 87 PIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATD-DKVTVESAEATLKYNVAIKCATITPDETRMKEFG 165 (380)
Q Consensus 87 ~IvvlpGDgIGpEV~~~~~~~l~~~g~~i~~~~~d~G~~~~d~tG-~~lp~etleaik~~da~lkGa~~tP~~~~~~~~~ 165 (380)
||++|||||||||||++++++|.+.+++|+|+++++|.++|+++| +++|++++++|+++|++||||+++|.+
T Consensus 2 ~I~vipGDGIGPEV~~aa~~VL~a~~~~i~~~~~~~G~~~~~~~gg~~lpdetl~~i~~~da~LkG~i~tp~~------- 74 (473)
T TIGR02924 2 PITVAYGDGIGPEIMEAVLLILKEAEAPIDIETIEIGEKVYKKGWPSGISPSSWESIRRTKVLLKAPITTPQG------- 74 (473)
T ss_pred eEEEEcCCcccHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHhhCCCCCCHHHHHHHHHCCEEEECcccCCCc-------
Confidence 699999999999999999999987889999999999999999995 899999999999999999999999953
Q ss_pred ccccCCCCchhHhhhcCCeEEeeecccCCC-CCCCCCC-CCCEEEEeeccCccccccceeecCCCceeeeecCCCCCCcc
Q 016961 166 LKSMWRSPNGTIRNILNGTVFREPILCQNI-PRIVPGW-KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPV 243 (380)
Q Consensus 166 L~~~~~spn~~LRk~ldlyanvRPi~~~~l-p~~~~~~-~~divIvREnteG~Y~g~e~~~~~~g~~e~~~~~~~g~~~~ 243 (380)
.+.+|+|++|||.||||+|+||| +.+ |++.+.. +.|+|||||||||+|+|.++... +++
T Consensus 75 --~~~~s~~~~LRk~ldLYANvRPv--~~~~p~~~~~~~~vDiVIVRENtEGlY~G~e~~~~-~~~-------------- 135 (473)
T TIGR02924 75 --GGHKSLNVTLRKTLGLYANIRPC--VSYHPFIETKSPNLNIVIVRENEEDLYTGIEYRQT-PDT-------------- 135 (473)
T ss_pred --cCcccHHHHHHHHcCCeEEEEEe--eccCCCCCCccCCcCEEEEEeccCceecCceeecc-CCh--------------
Confidence 23578899999999999999997 667 6665543 58999999999999999876421 111
Q ss_pred eeeecccCCcceeeecccCHHHHHHHHHHHHHHHhcCC-CCEEEEeCCCcccccchhHHHHHHHHHHHhhhcccCCCCee
Q 016961 244 ELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIW 322 (380)
Q Consensus 244 ~~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk-~~Vt~v~KaNVLk~tdglf~~i~~eVa~~eY~~~~~~p~I~ 322 (380)
+..+.+|||+++|||+|+||+||++|+ ++||++||+||||.+||+|+++|+|||+ +| |+|+
T Consensus 136 -----------~~~~kviTr~g~eRI~r~AFe~A~~r~rkkVT~v~KaNVmk~tdglf~e~~~eva~-ey------PdI~ 197 (473)
T TIGR02924 136 -----------YECTKLITRSGSEKICRYAFEYARKHNRKKVTCLTKDNIMKMTDGIFHKIFDKIAA-EY------PDIE 197 (473)
T ss_pred -----------heEeEecCHHHHHHHHHHHHHHHHhcCCCeEEEEECCccccccchhHHHHHHHHHh-hC------CCcE
Confidence 113445899999999999999999996 5799999999999999999999999998 89 9999
Q ss_pred EehhhHHHHHHHHHHCCCCc-EEEeCCchhhHHHhhhhhccCCccccCCCCCCCCC
Q 016961 323 YEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPN 377 (380)
Q Consensus 323 ~e~~lIDa~a~~LVk~P~~F-ViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~p~ 377 (380)
++|+|||++|||||++|++| ||||+|||||||||++|+++|||||+ +|+|++++
T Consensus 198 ~e~~~VDa~a~~Lv~~P~~FDVIVt~NLfGDILSDlaA~l~GslGla-pSaNiG~~ 252 (473)
T TIGR02924 198 SEHYIVDIGMARLATNPENFDVIVTPNLYGDILSDVAAEISGSVGLA-GSANIGEE 252 (473)
T ss_pred EeeHHHHHHHHHHhhCcccceEEEEccccchhhhHHHHHhcCCcCcc-cceecCCC
Confidence 99999999999999999999 99999999999999999999999999 88999987
No 26
>PRK07362 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=4e-70 Score=552.65 Aligned_cols=274 Identities=19% Similarity=0.121 Sum_probs=223.8
Q ss_pred EEEEcCCccHHHHHHHHHHHHhcC-------CCCeEEEEEecchHHHhhcCC--CCcHHHHHHHHhcCeeeecCCCCCCc
Q 016961 88 IVEMDGDEMTRIIWQMIKDKLIFP-------YLDLDIKYYDLGILNRDATDD--KVTVESAEATLKYNVAIKCATITPDE 158 (380)
Q Consensus 88 IvvlpGDgIGpEV~~~~~~~l~~~-------g~~i~~~~~d~G~~~~d~tG~--~lp~etleaik~~da~lkGa~~tP~~ 158 (380)
|++|||||||||||++++++|.+. +++|+|.++++|+++++++|+ .+|++++++|+++|++||||+++|.+
T Consensus 31 I~vIpGDGIGpEI~~aa~kVL~a~~~~~~~~~~~i~~~~~~~G~~a~~~~G~~~~lP~etle~i~~~da~L~Gpi~tP~~ 110 (474)
T PRK07362 31 IPFIRGDGTGVDIWPATQKVLDAAVAKAYGGERKINWFKVYAGDEACDLYGTYQYLPEDTLEAIREYGVAIKGPLTTPIG 110 (474)
T ss_pred EEEeCCCcccHHHHHHHHHHHHHHHHhccCCCCCeEEEEEccCHHHHHHhCCCCCCCHHHHHHHHHCCEEEECcccCCCC
Confidence 999999999999999999888521 258999999999999999996 79999999999999999999999953
Q ss_pred chhhhhcccccCCCCchhHhhhcCCeEEeeecccCCCCCCCCCC----CCCEEEEeeccCccccccceeecCCCceee--
Q 016961 159 TRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW----KKPICIGRHAFGDQYRATDTVIKGPGKLKM-- 232 (380)
Q Consensus 159 ~~~~~~~L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~~~~----~~divIvREnteG~Y~g~e~~~~~~g~~e~-- 232 (380)
.+++|+|++||+.||||+|+||| +.+||+.+++ +.|+|||||||||+|+|.++....+...++
T Consensus 111 ---------~g~~s~~l~LRk~ldLyaNvRPv--r~~pgl~sp~k~~~~iD~vIvRENTEGlY~G~~~~~~~~~~~~~~~ 179 (474)
T PRK07362 111 ---------GGIRSLNVALRQIFDLYSCVRPC--RYYAGTPSPHKNPEKLDVIVYRENTEDIYMGIEWEAGDEIGDKLIK 179 (474)
T ss_pred ---------cCccchHHHHHHHcCCceeeeEe--eccCCCCCcccCCCCCCEEEEEECCCceecccccccccccchhccc
Confidence 24678899999999999999997 6778876654 479999999999999998754211000000
Q ss_pred ----eecCCCCCCcceeeecccCCcceeeecccCHHHHHHHHHHHHHHHhcC---CCCEEEEeCCCcccccchhHHHHHH
Q 016961 233 ----VFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSK---KWPLYLSTKNTILKKYDGRFKDIFQ 305 (380)
Q Consensus 233 ----~~~~~~g~~~~~~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~r---k~~Vt~v~KaNVLk~tdglf~~i~~ 305 (380)
.+.+..+. ....+.+.+.+.+...||+.+++||+|+||+||++| +++||+|||+||||.++|+|++++.
T Consensus 180 ~~~~~~~~~~~~----~~~~~~~~~~a~~~k~iTr~g~eRI~r~AFe~A~~r~~~rkkVT~VhKaNVlk~t~glf~~~~~ 255 (474)
T PRK07362 180 HLNEEVIPASPE----LGKRQIPLGSGIGIKPVSKTGSQRHIRRAIEHALRLPGDKRHVTLVHKGNIMKYTEGAFRDWGY 255 (474)
T ss_pred cccccccccccc----ccccccccceeeeeeeccHHHHHHHHHHHHHHHHhcCCCCCeEEEEECCcccccchhHHHHHHH
Confidence 00000000 000011222355778899999999999999999998 3679999999999999999999888
Q ss_pred HHHHHhhhc---------------ccCC----------------------------------------------CCeeEe
Q 016961 306 QVYEERWRQ---------------KFEE----------------------------------------------HSIWYE 324 (380)
Q Consensus 306 eVa~~eY~~---------------~~~~----------------------------------------------p~I~~e 324 (380)
|||+++|++ +|-+ |+|.++
T Consensus 256 evA~~~~~~~~v~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 335 (474)
T PRK07362 256 ELATTEFRDECVTERESWILSNKEKNPNISIEDNARMIEPGYDSLTPEKKAAICAEVKEVLDSIWSSHGNGKWKEKVLVD 335 (474)
T ss_pred HHHHHhhhhhhhhhhhhhhhcccccCccccccccccccccccccccccccccccccccccccchhhccccccCCCcceee
Confidence 999766722 2311 458889
Q ss_pred hhhHHHHHHHHHHCCCCc-EEEeCCchhhHHHhhhhhccCCccccCCCCCCCCC
Q 016961 325 HRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPN 377 (380)
Q Consensus 325 ~~lIDa~a~~LVk~P~~F-ViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~p~ 377 (380)
|+|||++|||||++|++| ||||+|||||||||++|+++|||||+ ||||++++
T Consensus 336 ~~~vDa~a~~lv~~P~~FDVIVt~NLfGDILSDlaA~lvGglGla-PSANiG~~ 388 (474)
T PRK07362 336 DRIADSIFQQIQTRPQEYSILATLNLNGDYISDAAAAIVGGLGMA-PGANIGDN 388 (474)
T ss_pred hHHHHHHHHHHHhChhhCCEEEEccccchhhhHHHHHhcCCcccc-ceeeeCCC
Confidence 999999999999999999 99999999999999999999999999 88999876
No 27
>KOG0785 consensus Isocitrate dehydrogenase, alpha subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-69 Score=520.72 Aligned_cols=247 Identities=18% Similarity=0.215 Sum_probs=225.5
Q ss_pred ccEEEEcCCccHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcchhhhhc
Q 016961 86 NPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFG 165 (380)
Q Consensus 86 ~~IvvlpGDgIGpEV~~~~~~~l~~~g~~i~~~~~d~G~~~~d~tG~~lp~etleaik~~da~lkGa~~tP~~~~~~~~~ 165 (380)
.+|.+||||||||||++++++++.++.++|+|+..|++...--.++..+|+++++.+++.+++||||+.||.+
T Consensus 36 ~~vtLIpGDGIGpEi~~av~kvf~aak~pIewd~~dv~~~~~~~~~~~ip~~~~esl~~nkvgLkGp~~tPi~------- 108 (365)
T KOG0785|consen 36 ITVTLIPGDGIGPEISPAVKKVFEAAKVPIEWDFIDVTPIKGPFGGKAIPDEAVESLRKNKVGLKGPVATPIG------- 108 (365)
T ss_pred eEEEEecCCCCCHHHHHHHHHHHHhcCCCcceeeeeccccccCCCCccCCHHHHHHHHhhcccccCcccCccc-------
Confidence 5789999999999999999999998899999999999876533477899999999999999999999999975
Q ss_pred ccccCCCCchhHhhhcCCeEEeeecccCCCCCCCCCC-CCCEEEEeeccCccccccceeecCCCceeeeecCCCCCCcce
Q 016961 166 LKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW-KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVE 244 (380)
Q Consensus 166 L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~~~~-~~divIvREnteG~Y~g~e~~~~~~g~~e~~~~~~~g~~~~~ 244 (380)
++.+|+|++|||+|+||||+||| ++++|.+.+| +.|+|++||||||+|+|+|+.+. +|++ +.
T Consensus 109 --kgh~S~nl~LRK~f~LyANVRPc--~SieG~Kt~Y~~vD~V~IRENTEgeYsgiEh~vv-pGVv------------qs 171 (365)
T KOG0785|consen 109 --KGHRSLNLALRKEFGLYANVRPC--KSIEGYKTPYDDVDLVIIRENTEGEYSGIEHQVV-PGVV------------QS 171 (365)
T ss_pred --cccccHHHHHHHHhchhccceec--ccccCCcCCCCCceEEEEecCCccccccceeecc-ccHH------------HH
Confidence 56789999999999999999995 8999998887 47999999999999999999653 4442 23
Q ss_pred eeecccCCcceeeecccCHHHHHHHHHHHHHHHhcCC-CCEEEEeCCCcccccchhHHHHHHHHHHHhhhcccCCCCeeE
Q 016961 245 LDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWY 323 (380)
Q Consensus 245 ~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk-~~Vt~v~KaNVLk~tdglf~~i~~eVa~~eY~~~~~~p~I~~ 323 (380)
+++ +|+.+++||++|||+||++++ ++||++||+|||+.+||+|+++|+|+++ +| |+|+|
T Consensus 172 iK~-------------IT~~AS~Ria~~AF~yAr~~~R~~vtvvHKaNImr~tDGLFle~cre~a~-~y------~dI~~ 231 (365)
T KOG0785|consen 172 IKL-------------ITEAASRRIAEYAFEYARQNGRKRVTVVHKANIMRMTDGLFLECCREVAK-KY------PDIKF 231 (365)
T ss_pred HHH-------------HHHHHHHHHHHHHHHHHHHcCCCceEEEehhhhhhhcchHHHHHHHHHhh-hC------Cccch
Confidence 433 799999999999999999987 5799999999999999999999999987 89 99999
Q ss_pred ehhhHHHHHHHHHHCCCCc-EEEeCCchhhHHHhhhhhccCCccccCCCCCCCCC
Q 016961 324 EHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPN 377 (380)
Q Consensus 324 e~~lIDa~a~~LVk~P~~F-ViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~p~ 377 (380)
|++|+|+||+.|+++|..| |+|+||||||||||+||+|+||||+. ||+|+.+.
T Consensus 232 eE~~lDt~~l~lv~~P~~~DVlV~PNLYGDIlSD~~agLvGgLGlt-PS~NiG~g 285 (365)
T KOG0785|consen 232 EEQYLDTCCLKLVRNPSCFDVLVMPNLYGDILSDLCAGLVGGLGLT-PSANIGDG 285 (365)
T ss_pred hHHHHHHHHHHHhcCchhceEEeccchhHHHHHHHHHHhccCcccC-CCcccCCC
Confidence 9999999999999999999 99999999999999999999999999 78999865
No 28
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate. IDH is either dependent on NAD+ (1.1.1.41 from EC) or on NADP+ (1.1.1.42 from EC). In eukaryotes there are at least three isozymes of IDH: two are located in the mitochondrial matrix (one NAD+-dependent, the other NADP+-dependent), while the third one (also NADP+-dependent) is cytoplasmic. In Escherichia coli the activity of a NADP+-dependent form of the enzyme is controlled by the phosphorylation of a serine residue; the phosphorylated form of IDH is completely inactivated. 3-isopropylmalate dehydrogenase (1.1.1.85 from EC) (IMDH) [, ] catalyses the third step in the biosynthesis of leucine in bacteria and fungi, the oxidative decarboxylation of 3-isopropylmalate into 2-oxo-4-methylvalerate. Tartrate dehydrogenase (1.1.1.93 from EC) [] catalyses the reduction of tartrate to oxaloglycolate. These enzymes are evolutionary related. To this family also belongs the enzyme tartrate dehydrogenase, which shows strong homology to prokaryotic isopropylmalate dehydrogenases and, to a lesser extent, isocitrate dehydrogenase []. This entry represents a structural domain found in all types of isocitrate dehydrogenase, and in isopropylmalate dehydrogenase and tartrate dehydrogenase. The crystal structure of Escherichia coli isopropylmalate dehydrogenase has been described []. ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1WAL_A 1CNZ_B 2D4V_C 1CM7_A 4AOY_D 3FMX_X 3FLK_C 1A05_A 1X0L_B 4F7I_D ....
Probab=100.00 E-value=5.8e-70 Score=542.65 Aligned_cols=253 Identities=21% Similarity=0.229 Sum_probs=217.8
Q ss_pred cEEEEcCCccHHHHHHHHHHHHhcC----CCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcchhh
Q 016961 87 PIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMK 162 (380)
Q Consensus 87 ~IvvlpGDgIGpEV~~~~~~~l~~~----g~~i~~~~~d~G~~~~d~tG~~lp~etleaik~~da~lkGa~~tP~~~~~~ 162 (380)
+|++||||||||||++++++++.+. +++|+|+++++|.+++++||+++|+|++++|+++|++||||+++|......
T Consensus 1 kI~vipGDGIGpEv~~~~~~Vl~a~~~~~~~~~e~~~~~~G~~~~~~~g~~lp~et~~~i~~~daiL~Gai~~p~~~~~~ 80 (348)
T PF00180_consen 1 KIAVIPGDGIGPEVMPAALRVLEAAAEKYGLDFEFEEFDIGGEAYDKTGEPLPDETLEAIKRADAILKGAIGTPKPPGIR 80 (348)
T ss_dssp EEEEEEESTTHHHHHHHHHHHHHHHHHHHTEEEEEEEEETSHHHHHHHSSSSHHHHHHHHHHCSEEEEEE--CGGSSSHS
T ss_pred CcceeccCcchHHHHHHHHHHHHHHHhhcccccccccccchhhhhhhccccccHHHHHHHhhcCcEEEcccccccccccc
Confidence 5899999999999999999877543 689999999999999999999999999999999999999999999732111
Q ss_pred hhcccccCCCCchhHhhhcCCeEEeeecccCCCC--CCCCCC------CCCEEEEeeccCccccccceeecCCCceeeee
Q 016961 163 EFGLKSMWRSPNGTIRNILNGTVFREPILCQNIP--RIVPGW------KKPICIGRHAFGDQYRATDTVIKGPGKLKMVF 234 (380)
Q Consensus 163 ~~~L~~~~~spn~~LRk~ldlyanvRPi~~~~lp--~~~~~~------~~divIvREnteG~Y~g~e~~~~~~g~~e~~~ 234 (380)
.. ++.++||+.||||+|+||+ +.+| +..+++ ++||+||||||||+|+|.++.... +.
T Consensus 81 ~~-------~~l~~lR~~ldl~anvRp~--~~~~~~~~~~~~~~~~~~~iDivivREnteG~Y~g~~~~~~~-~~----- 145 (348)
T PF00180_consen 81 SE-------NGLLKLRKELDLYANVRPV--RSFPGPGVPSPLKDEIPEGIDIVIVRENTEGLYSGIEHEIGD-GG----- 145 (348)
T ss_dssp HH-------HHHHHHHHHTTHHEEEEEE--EEECETTGGSSBSHHHHTTSEEEEEEESSSGGGGEEEEEECS-EE-----
T ss_pred cH-------HHHHHHHHhcccceeeEEE--EEeccccccccccccccCcceEEEecccccCcccCCCCceee-cc-----
Confidence 11 1236899999999999998 5564 333332 379999999999999999886531 10
Q ss_pred cCCCCCCcceeeecccCCcceeeecccCHHHHHHHHHHHHHHHhcC-CCCEEEEeCCCcccccchhHHHHHHHHHHHhhh
Q 016961 235 DPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSK-KWPLYLSTKNTILKKYDGRFKDIFQQVYEERWR 313 (380)
Q Consensus 235 ~~~~g~~~~~~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~r-k~~Vt~v~KaNVLk~tdglf~~i~~eVa~~eY~ 313 (380)
.++..+..+.+||++++|||+|+||+||++| +++||++||+|||+.++ +|+++|+||++++|
T Consensus 146 ---------------~~~~~a~~~~~~t~~~~eRi~r~AF~~A~~r~~k~Vt~v~KaNvl~~~~-lf~~~~~eva~~~y- 208 (348)
T PF00180_consen 146 ---------------TPDEVAIDTKVITREGIERIARFAFEYARKRGRKKVTVVHKANVLKSTD-LFREVFQEVAKQEY- 208 (348)
T ss_dssp ---------------EGSSEEEEEEEEEHHHHHHHHHHHHHHHHHTTTSEEEEEESTTTSTTHH-HHHHHHHHHHHHTH-
T ss_pred ---------------CCCceEEEeeccccchhhHHHHHHHHHHHHhCCceEEEEeccchhHHHH-HHHHHHHHHHHhhc-
Confidence 1223456777899999999999999999999 68899999999999888 99999999998689
Q ss_pred cccCCCCeeEehhhHHHHHHHHHHCCCCc-EEEeCCchhhHHHhhhhhccCCccccCCCCCCCCC
Q 016961 314 QKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPN 377 (380)
Q Consensus 314 ~~~~~p~I~~e~~lIDa~a~~LVk~P~~F-ViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~p~ 377 (380)
|+|+++|++||+++|+||++|++| ||||+|||||||||++|+++|||||+ ||+|++|+
T Consensus 209 -----p~I~~~~~~vD~~~~~Lv~~P~~fdViv~~Nl~GDIlSDl~a~l~G~lGl~-psanig~~ 267 (348)
T PF00180_consen 209 -----PDIEVEHMLVDAAAMQLVKNPEQFDVIVTPNLFGDILSDLAAGLVGGLGLA-PSANIGPD 267 (348)
T ss_dssp -----TTSEEEEEEHHHHHHHHHHSGGGESEEEEEHHHHHHHHHHHHHHHTSGGGE-EEEEEETS
T ss_pred -----ceeEeeeeechhhhheeecCCcceeEEeecchhHHHHHHHhhhcCCChhhh-hhhccCcc
Confidence 999999999999999999999999 99999999999999999999999999 78999864
No 29
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=3.3e-68 Score=524.48 Aligned_cols=274 Identities=32% Similarity=0.387 Sum_probs=248.2
Q ss_pred EEEEcCCccHHHHHHHHHHH----HhcCC---CCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcch
Q 016961 88 IVEMDGDEMTRIIWQMIKDK----LIFPY---LDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETR 160 (380)
Q Consensus 88 IvvlpGDgIGpEV~~~~~~~----l~~~g---~~i~~~~~d~G~~~~d~tG~~lp~etleaik~~da~lkGa~~tP~~~~ 160 (380)
|-++.|||||+||++++.++ ++.++ .+|+|.|+++|.++++.||+.||+||+++|++|.|++|||++||.
T Consensus 21 iP~IegDgiG~eit~~~~kvi~aav~k~Y~g~~~I~w~e~~aG~ka~d~tg~~lp~etl~aikky~VaIKgpl~TPv--- 97 (407)
T COG0538 21 IPFIEGDGIGDEITRAIWKVIDAAVEKAYGGERKIEWKEVDAGEKARDKTGDQLPIETLEAIKKYGVAIKGPLTTPV--- 97 (407)
T ss_pred cceEecCCCcHHHHHHHHHHHHHHHHhhcCCcceeEEEEEecchHHHHhhcCcCCHHHHHHHHHhCEEeeccccCcc---
Confidence 34778888888888877654 45556 999999999999999999999999999999999999999999994
Q ss_pred hhhhcccccCCCCchhHhhhcCCeEEeeeccc-CCCCCCCCC-CCCCEEEEeeccCccccccceeecCCCceeeeecCCC
Q 016961 161 MKEFGLKSMWRSPNGTIRNILNGTVFREPILC-QNIPRIVPG-WKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPED 238 (380)
Q Consensus 161 ~~~~~L~~~~~spn~~LRk~ldlyanvRPi~~-~~lp~~~~~-~~~divIvREnteG~Y~g~e~~~~~~g~~e~~~~~~~ 238 (380)
++||+|||++||+.||||+|+|||++ +++|.+.++ |+.|+||+||||||+|.|+||....++..++.+...+
T Consensus 98 ------g~g~rSlNvtlRq~Ldly~~~rPv~y~~gvPspvk~pe~~dmVIfRenteDiYagiE~~~~s~~a~kl~~fl~~ 171 (407)
T COG0538 98 ------GKGWRSLNVTLRQILDLYVFRRPVRYFPGVPSPVKRPEKVDMVIFRENTEDIYAGIEWKAGSPEALKLIFFLED 171 (407)
T ss_pred ------cccccCchHHHHHHcCceEeeeeEEecCCCCCCCCCcccCCeEEEeccccchhheeeeccCCcchhhhhhhhhc
Confidence 48999999999999999999999997 488877665 8999999999999999999999999998888766554
Q ss_pred CCCcceeeecccC-CcceeeecccCHHHHHHHHHHHHHHHhcCC-CCEEEEeCCCcccccchhHHHHHHHHHHHh-----
Q 016961 239 GTGPVELDVYNFK-GPGIALAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEER----- 311 (380)
Q Consensus 239 g~~~~~~~v~~~~-~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk-~~Vt~v~KaNVLk~tdglf~~i~~eVa~~e----- 311 (380)
+ ..+++++|+ +.|+...| ++++++.|++|.||+||.+++ ++||++||.||||.|+|.|+++++|||+++
T Consensus 172 e---~~~~~i~~pe~~GIgikp-~s~~~s~Rlvr~ai~yAi~~~r~~VtlvhKgnImK~teGaFkdw~yeva~~~ef~~~ 247 (407)
T COG0538 172 E---MGVKKIRFPEDSGIGIKP-ISKEGSIRLVRAAIEYAIENKRKSVTLVHKGNIMKFTEGAFKDWGYEVAEEEEFGDE 247 (407)
T ss_pred c---cccceEecCCCCceEEEe-cCchhhHHHHHHHHHHHHHcCCceEEEEecCeeeecccchHHHHHHHHHhhhccccc
Confidence 3 347788998 89999999 578888889999999999998 689999999999999999999999999974
Q ss_pred ---hhcccCCCC----eeEehhhHHHHHHHHHHCCCCc-EEEeCCchhhHHHhhhhhccCCccccCCCCCCC
Q 016961 312 ---WRQKFEEHS----IWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRA 375 (380)
Q Consensus 312 ---Y~~~~~~p~----I~~e~~lIDa~a~~LVk~P~~F-ViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~ 375 (380)
|+.+|+..+ |.++|+++|+|.+|++++|+.| ||+|+||.||++||.+|+++|||||+ +++|.+
T Consensus 248 ~~~~~~~~~~~~~~gkI~~~driaD~mlqQil~r~~eydViA~~NlnGDy~SDa~Aa~vGglGi~-pgani~ 318 (407)
T COG0538 248 VVTGKEKFELKGPKGKIVYKDRIADDMLQQILLRPGEYDVIATKNLNGDYISDALAAQVGGLGLA-PGANIG 318 (407)
T ss_pred ccccchhhhccCcCceEEEehhhHHHHHHHHhcCCCCceEEEeccCCccHHHHHHHHhcCCcccc-ccceec
Confidence 677888888 9999999999999999999999 99999999999999999999999999 678876
No 30
>KOG0784 consensus Isocitrate dehydrogenase, gamma subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-59 Score=456.56 Aligned_cols=253 Identities=17% Similarity=0.184 Sum_probs=227.1
Q ss_pred cccccccccEEEEcCCccHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCc
Q 016961 79 IDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDE 158 (380)
Q Consensus 79 ~~~~~~~~~IvvlpGDgIGpEV~~~~~~~l~~~g~~i~~~~~d~G~~~~d~tG~~lp~etleaik~~da~lkGa~~tP~~ 158 (380)
..|++..++|.+|||||||||++..+.+++.+..++++|+++++++ . .+.+...++|+++++++.++.|||-+-||+.
T Consensus 36 ~~kygg~~tVTlipGdGIGpe~~~~V~~v~~a~~~PV~fE~i~v~~-~-~~~~~~~~~e~v~Si~rNkValkG~i~t~~~ 113 (375)
T KOG0784|consen 36 PAKYGGRHTVTLIPGDGIGPELTNAVREVFSAAHAPVEFEEIEVSG-S-NKESSEDLDEAVESIKRNKVALKGNIETPDL 113 (375)
T ss_pred CcccCCcceEEEeCCCCcCHHHHHHHHHHHHhcCCCeeEEEEEccC-C-ccccchhHHHHHHHHHhcceeEeecccCCCC
Confidence 3488899999999999999999999999999899999999999987 2 2334557899999999999999999999932
Q ss_pred chhhhhcccccCCCCchhHhhhcCCeEEeeecccCCCCCCCCCC-CCCEEEEeeccCccccccceeecCCCceeeeecCC
Q 016961 159 TRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW-KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPE 237 (380)
Q Consensus 159 ~~~~~~~L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~~~~-~~divIvREnteG~Y~g~e~~~~~~g~~e~~~~~~ 237 (380)
..+..|.|..||++||||||+-- |+++||+++++ ++||+|+||||||+|+|.|++.. ||++|
T Consensus 114 --------~g~~~s~n~~LR~~LDLyanvv~--~~slpG~~tRh~~vDiviIRENTEGEYs~LEHE~V-pGVVE------ 176 (375)
T KOG0784|consen 114 --------PGGAKSLNVKLRKELDLYANVVH--CKSLPGVKTRHENVDIVIIRENTEGEYSGLEHESV-PGVVE------ 176 (375)
T ss_pred --------ccchhhhHHHHHHhhhhhhheee--eeccCCcccccCCccEEEEecCCcccccccccccC-cchhh------
Confidence 13567899999999999999975 59999999886 57999999999999999999864 66643
Q ss_pred CCCCcceeeecccCCcceeeecccCHHHHHHHHHHHHHHHhcCC-CCEEEEeCCCcccccchhHHHHHHHHHHHhhhccc
Q 016961 238 DGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKF 316 (380)
Q Consensus 238 ~g~~~~~~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk-~~Vt~v~KaNVLk~tdglf~~i~~eVa~~eY~~~~ 316 (380)
+++| +|++.++|||||||+||.+.+ ||||+||||||||..||+|+++|+||++ .|
T Consensus 177 ------sLKV-------------vT~~kseRIaryAF~yA~k~gRKkVTaVHKAnimKL~DGlFle~~~eva~-~Y---- 232 (375)
T KOG0784|consen 177 ------SLKV-------------VTRFKSERIARYAFEYAKKNGRKKVTAVHKANIMKLGDGLFLESCQEVAK-KY---- 232 (375)
T ss_pred ------eeee-------------ehhhhhHHHHHHHHHHHHHhCCceEEEEeccCceecchhhHHHHHHHHHh-cC----
Confidence 4555 599999999999999999986 6899999999999999999999999998 69
Q ss_pred CCCCeeEehhhHHHHHHHHHHCCCCc-EEEeCCchhhHHHhhhhhccCCccccCCCCCCCCC
Q 016961 317 EEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPN 377 (380)
Q Consensus 317 ~~p~I~~e~~lIDa~a~~LVk~P~~F-ViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~p~ 377 (380)
|+|+++.++||++|||||.+|++| |+|+|||||.|+|.+||+|+||.|+. |-+|..-+
T Consensus 233 --p~I~~e~miVDN~~MQlvs~P~qFDvmv~pnlYgniisNiaaGlvGG~Glv-~G~n~G~~ 291 (375)
T KOG0784|consen 233 --PDITFEEMIVDNACMQLVSRPQQFDVMVMPNLYGNIISNIAAGLVGGAGLV-SGANYGDD 291 (375)
T ss_pred --CCccHHHhhHHHhHHHhhcCchheeeEechHHHHHHHHHHHHHhcCCCCcc-cccccccc
Confidence 999999999999999999999999 99999999999999999999999999 67776544
No 31
>KOG0786 consensus 3-isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-55 Score=414.40 Aligned_cols=247 Identities=17% Similarity=0.127 Sum_probs=212.2
Q ss_pred cccEEEEcCCccHHHHHHHHHHHHhcC----CCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcc-
Q 016961 85 QNPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDET- 159 (380)
Q Consensus 85 ~~~IvvlpGDgIGpEV~~~~~~~l~~~----g~~i~~~~~d~G~~~~d~tG~~lp~etleaik~~da~lkGa~~tP~~~- 159 (380)
.++|++||||||||||+..++.+|.+. +++|+|++.++|+++.|.+|.|+|+|++++.|++|++|+|+++.|..+
T Consensus 4 ~~~i~llpgd~ig~ev~s~a~~vlq~~~~l~~vefdf~~~~iggaald~~gvplpeet~~aak~sdavllgaigg~kw~~ 83 (363)
T KOG0786|consen 4 RYNITLLPGDGIGPEVISVAKNVLQKAGSLEGVEFDFEEMPIGGAALDLVGVPLPEETLTAAKKSDAVLLGAIGGYKWDK 83 (363)
T ss_pred cceEEEcCCCCcCHHHHHHHHHHHHHhccccceeeccccCcccccchhccCCCCCHHHHhhhhhcceeEeecccCcccCc
Confidence 478999999999999999999988654 799999999999999999999999999999999999999999987522
Q ss_pred ---hhhhhcccccCCCCchhHhhhcCCeEEeeecccCCCCCC------CCCC--CCCEEEEeeccCccccccceeecCCC
Q 016961 160 ---RMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRI------VPGW--KKPICIGRHAFGDQYRATDTVIKGPG 228 (380)
Q Consensus 160 ---~~~~~~L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~------~~~~--~~divIvREnteG~Y~g~e~~~~~~g 228 (380)
| +|.+| +.||+.|.+|+|+||+- -+|.+ ++.+ ..|++||||.|+|+|+|.....
T Consensus 84 ~~lr-pe~gl--------l~ir~~lkvfanlrp~~--~~~qlvd~s~lk~e~aeg~d~mvvrel~ggiyfge~r~e---- 148 (363)
T KOG0786|consen 84 NHLR-PEMGL--------LKIRRDLKVFANLRPAT--VLPQLVDASTLKKEVAEGVDMMVVRELTGGIYFGEPRNE---- 148 (363)
T ss_pred CCcC-hhhhH--------HHHHHHHHHHhcCCcch--hhHhhhccccccHHHhcCcceEEeeeecCceeecCcccC----
Confidence 1 12233 58999999999999973 33422 2222 4699999999999999975421
Q ss_pred ceeeeecCCCCCCcceeeecccCCcceeeecccCHHHHHHHHHHHHHHHhcCC--CCEEEEeCCCcccccchhHHHHHHH
Q 016961 229 KLKMVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKK--WPLYLSTKNTILKKYDGRFKDIFQQ 306 (380)
Q Consensus 229 ~~e~~~~~~~g~~~~~~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk--~~Vt~v~KaNVLk~tdglf~~i~~e 306 (380)
+|+ +.++++..|+-+++.||+|.||++|++|+ .++|++||+|||. ++.+||+.+.+
T Consensus 149 ---------ng~------------gva~dte~Ya~~Ev~RIaR~Aa~~A~~~~pp~pl~slDKANVLa-aSrLWRKtV~~ 206 (363)
T KOG0786|consen 149 ---------NGE------------GVAFDTEIYAAHEVDRIARVAAETARKRRPPGPLCSLDKANVLA-ASRLWRKTVTK 206 (363)
T ss_pred ---------CCc------------ceeeccccccHHHHHHHHHHHHHHHHhhCCCCCccccchhhHHH-HHHHHHHHHHH
Confidence 110 12456777999999999999999999998 7899999999998 78999999998
Q ss_pred HHHHhhhcccCCCCeeEehhhHHHHHHHHHHCCCCc--EEEeCCchhhHHHhhhhhccCCccccCCCCCCC
Q 016961 307 VYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGY--VWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRA 375 (380)
Q Consensus 307 Va~~eY~~~~~~p~I~~e~~lIDa~a~~LVk~P~~F--ViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~ 375 (380)
..++|| |++++.|+|||+++||||++|.+| +|||.|+|||||||+++.+.|||||+|| |++.
T Consensus 207 ~~k~Ey------P~l~l~hqliDsAAM~Lvk~P~~lng~ivT~NiFGDIiSDEASvIpGSlGlLPS-ASLs 270 (363)
T KOG0786|consen 207 ALKSEY------PDLELSHQLIDSAAMQLVKDPKQLNGTIVTNNIFGDIISDEASVIPGSLGLLPS-ASLS 270 (363)
T ss_pred HHHhhC------CCcchhhhhhhHHHHHHhcCchhcCceEEeccchhhhhccccccccCccccccc-hhhc
Confidence 878899 999999999999999999999999 9999999999999999999999999954 4443
No 32
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type. This model does not discriminate cytosolic, mitochondrial, and chloroplast proteins. However, the model starts very near the amino end of the cytosolic form; the finding of additional amino-terminal sequence may indicate a transit peptide.
Probab=88.51 E-value=0.25 Score=51.32 Aligned_cols=20 Identities=10% Similarity=0.082 Sum_probs=18.3
Q ss_pred CCCEEEEeecc-Cccccccce
Q 016961 203 KKPICIGRHAF-GDQYRATDT 222 (380)
Q Consensus 203 ~~divIvREnt-eG~Y~g~e~ 222 (380)
.+|++|+|||| ||+|+|.++
T Consensus 140 ~iD~vivREnt~Eg~Y~g~e~ 160 (409)
T TIGR00127 140 ATDFVVPGPGKLELVYKPKDG 160 (409)
T ss_pred ceEEEEecCCeeeEEEECCCC
Confidence 47999999999 999999986
No 33
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional
Probab=77.17 E-value=1.2 Score=46.51 Aligned_cols=12 Identities=25% Similarity=0.329 Sum_probs=7.1
Q ss_pred hHHHHHHHHHHC
Q 016961 327 LIDDMVAYAIKS 338 (380)
Q Consensus 327 lIDa~a~~LVk~ 338 (380)
++-++++.|+=.
T Consensus 278 IlSDlaA~l~Gs 289 (410)
T PLN00103 278 VQSDFLAQGFGS 289 (410)
T ss_pred HHHHHHHHhcCc
Confidence 356666777633
No 34
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=64.09 E-value=34 Score=37.65 Aligned_cols=114 Identities=17% Similarity=0.260 Sum_probs=70.6
Q ss_pred eeccCcccccccee--ecCCCceeeeecCCCCCCcceeee-cccCCcceeeecccCHHHHHHHHHHHHHHHhcCCCCEEE
Q 016961 210 RHAFGDQYRATDTV--IKGPGKLKMVFDPEDGTGPVELDV-YNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYL 286 (380)
Q Consensus 210 REnteG~Y~g~e~~--~~~~g~~e~~~~~~~g~~~~~~~v-~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk~~Vt~ 286 (380)
-+-.+|-|++-|.. +...+.+++.|...+|... .++- .......+.+..+++.+.-..|.+..++-|++.+--..+
T Consensus 174 a~M~~gDFy~~EkSvt~~~a~~~~Ie~~~~~G~~~-vLK~~~~l~~gEviDat~ms~~aL~~F~~~~i~~Ak~~gvLfSl 252 (741)
T TIGR00178 174 AHMDNGDFYGSEKSATIDAAGSVKIELIAKDGSST-VLKAKLPLLDGEIIDSSVMSKKALRNFIEEEIEDAKEEGVLLSL 252 (741)
T ss_pred eecCCCCCcCCceeEEecCCCeEEEEEEcCCCCEE-EecCCCccCCCCEeehhhhCHHHHHHHHHHHHHHHHHcCcEEEe
Confidence 34445555555543 3445566777877776432 2221 111234577888899999999999999999877644444
Q ss_pred EeCCCcccccchh-HH----HHHHHHHHHhhhcccCCCCeeEeh
Q 016961 287 STKNTILKKYDGR-FK----DIFQQVYEERWRQKFEEHSIWYEH 325 (380)
Q Consensus 287 v~KaNVLk~tdgl-f~----~i~~eVa~~eY~~~~~~p~I~~e~ 325 (380)
=-|++-||-+|-. |= --|+++.+ +|.+.|++-++....
T Consensus 253 HlKATMMKVSDPIiFGhaV~vffkdvF~-k~~~~~~~~Gvn~nn 295 (741)
T TIGR00178 253 HLKATMMKVSDPIMFGHAVREFYKDAFA-KHAEVLKQLGVDVNN 295 (741)
T ss_pred eehheeecccCceehhHHHHHHHHHHHH-HHHHHHHHcCCCcCc
Confidence 4599999988853 32 23345555 566656656655554
No 35
>PF03971 IDH: Monomeric isocitrate dehydrogenase; InterPro: IPR004436 This family of enzymes catalyses the NADP(+)-dependent oxidative decarboxylation of isocitrate to form 2-oxoglutarate, CO2, and NADPH within the Krebs cycle (1.1.1.42 from EC). Thus this enzyme supplies the cell with a key intermediate in energy metabolism, and precursors for biosynthetic pathways. The activity of this enzyme, which is controlled by phosphorylation, helps regulate carbon flux between the Krebs cycle and the glyoxylate bypass, which is an alternate route that accumulates carbon for biosynthesis when acetate is the sole carbon source for growth []. The phosphorylation state of this enzyme is controlled by isocitrate dehydrogenase kinase/phosphatase. This family has been found in a number of bacterial species including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. The structure of isocitrate dehydrogenase from Azotobacter vinelandii (P16100 from SWISSPROT) has been determined []. This molecule consists of two distinct domains, a small domain and a large domain, with a folding topology similar to that of dimeric isocitrate dehydrogenase from Escherichia coli (P08200 from SWISSPROT). The structure of the large domain repeats a motif observed in the dimeric enzyme. Such a fusional structure by domain duplication enables a single polypeptide chain to form a structure at the catalytic site that is homologous to the dimeric enzyme, the catalytic site of which is located at the interface of two identical subunits.; GO: 0004450 isocitrate dehydrogenase (NADP+) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process; PDB: 1ITW_D 1J1W_A 3MBC_A 2B0T_A.
Probab=52.65 E-value=18 Score=39.69 Aligned_cols=114 Identities=20% Similarity=0.288 Sum_probs=64.6
Q ss_pred eeccCcccccccee--ecCCCceeeeecCCCCCCcceee-ecccCCcceeeecccCHHHHHHHHHHHHHHHhcCCCCEEE
Q 016961 210 RHAFGDQYRATDTV--IKGPGKLKMVFDPEDGTGPVELD-VYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYL 286 (380)
Q Consensus 210 REnteG~Y~g~e~~--~~~~g~~e~~~~~~~g~~~~~~~-v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk~~Vt~ 286 (380)
-+-.+|-|++-|.. +...+.+.+.|.+.+|.. +.++ -.......+.+..+++.+.-+.+.+...+.|++.+--..+
T Consensus 170 a~M~~gDFy~nEkS~t~~~~~~~~Ie~~~~~G~~-~vLK~~~~l~~gEviDat~Ms~~aL~~F~~~~i~~AK~~~vLfSl 248 (735)
T PF03971_consen 170 AHMSGGDFYGNEKSVTVDKATTVRIEFVGKDGSV-TVLKEGLPLLAGEVIDATFMSAKALRAFYEEQIEDAKEEGVLFSL 248 (735)
T ss_dssp E--SSSSHHHH-EEEE-SSSEEEEEEEEETTS-E-EEEEEEEEE-TT-EEEEEEE-HHHHHHHHHHHHHHHHHHT-EEEE
T ss_pred eecCCCCCCCCceEEEecCCCeEEEEEEcCCCCE-EeccCCCcCCCCcEeehhhccHHHHHHHHHHHHHHHHhcCCeEEe
Confidence 34445555555543 334455666677777632 2222 1111234577888899999999999999999887644444
Q ss_pred EeCCCcccccchh-HH----HHHHHHHHHhhhcccCCCCeeEeh
Q 016961 287 STKNTILKKYDGR-FK----DIFQQVYEERWRQKFEEHSIWYEH 325 (380)
Q Consensus 287 v~KaNVLk~tdgl-f~----~i~~eVa~~eY~~~~~~p~I~~e~ 325 (380)
=-|++-||-+|-. |= --|++|.+ +|.+.|++-+|....
T Consensus 249 HlKATMMKVSDPIiFGhaV~v~f~~vF~-k~~~~~~~~Gvn~nn 291 (735)
T PF03971_consen 249 HLKATMMKVSDPIIFGHAVKVFFKDVFE-KHGDTFKELGVNPNN 291 (735)
T ss_dssp -B-TTTSTTHHHHHHHHHHHHHCHHHHH-HCHHHHHHCT-SCCC
T ss_pred eehhhhhhccCccHHHHHHHHHHHHHHH-HHHHHHHHcCCCccc
Confidence 4599999988854 32 22345555 566666666666553
No 36
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=49.07 E-value=92 Score=28.78 Aligned_cols=76 Identities=9% Similarity=-0.001 Sum_probs=50.9
Q ss_pred CccHHHHHHHHHHHHhcCCCCeEEEEEe-c---chHHHhh----cCCCCcHHH----HHHHHhcCeeeecCCCCCCcchh
Q 016961 94 DEMTRIIWQMIKDKLIFPYLDLDIKYYD-L---GILNRDA----TDDKVTVES----AEATLKYNVAIKCATITPDETRM 161 (380)
Q Consensus 94 DgIGpEV~~~~~~~l~~~g~~i~~~~~d-~---G~~~~d~----tG~~lp~et----leaik~~da~lkGa~~tP~~~~~ 161 (380)
+|-+..+.+++++-+.+.|.+++..... . ++..-+. ....+++|+ ++.++++|++++|. |..
T Consensus 13 ~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI~gs---Pvy--- 86 (207)
T COG0655 13 NGNTAKLAEAVLEGAEEAGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGIIFGS---PVY--- 86 (207)
T ss_pred CCcHHHHHHHHHHHHHHcCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEEEeC---Cee---
Confidence 7899999999998887778887766543 2 3322221 225566554 45599999999874 431
Q ss_pred hhhcccccCCCCchhHhhhcCC
Q 016961 162 KEFGLKSMWRSPNGTIRNILNG 183 (380)
Q Consensus 162 ~~~~L~~~~~spn~~LRk~ldl 183 (380)
|.+...+++.-+|-
T Consensus 87 --------~g~vsa~~K~fiDR 100 (207)
T COG0655 87 --------FGNVSAQMKAFIDR 100 (207)
T ss_pred --------cCCchHHHHHHHhh
Confidence 34556788888884
No 37
>PTZ00435 isocitrate dehydrogenase; Provisional
Probab=46.29 E-value=12 Score=39.23 Aligned_cols=18 Identities=0% Similarity=-0.038 Sum_probs=16.6
Q ss_pred CCCEEEEeecc-Ccccccc
Q 016961 203 KKPICIGRHAF-GDQYRAT 220 (380)
Q Consensus 203 ~~divIvREnt-eG~Y~g~ 220 (380)
.+|++|+|||| ||+|.+.
T Consensus 143 ~id~vi~rent~e~~y~~~ 161 (413)
T PTZ00435 143 ATDFVVDGPGKLELVFTPA 161 (413)
T ss_pred ceEEEEecCCEEEEEEecC
Confidence 46999999999 9999998
No 38
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=35.23 E-value=1.2e+02 Score=28.07 Aligned_cols=84 Identities=12% Similarity=0.049 Sum_probs=50.2
Q ss_pred cEEEEcCC----ccHHHHHHHHHHHHhcCCCCeEEEE-EecchHHHh--hcCCCCcHHHHHHHHhcCeeeecCCCCCCcc
Q 016961 87 PIVEMDGD----EMTRIIWQMIKDKLIFPYLDLDIKY-YDLGILNRD--ATDDKVTVESAEATLKYNVAIKCATITPDET 159 (380)
Q Consensus 87 ~IvvlpGD----gIGpEV~~~~~~~l~~~g~~i~~~~-~d~G~~~~d--~tG~~lp~etleaik~~da~lkGa~~tP~~~ 159 (380)
+|++|-|- +-...+.+.+.+.+.+.|++++... .++-.+... .++.+--.+..+.++++|+++.+ +|..
T Consensus 2 kIl~I~GSpr~~S~t~~l~~~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~---tP~Y- 77 (191)
T PRK10569 2 RVITLAGSPRFPSRSSALLEYAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVA---TPVY- 77 (191)
T ss_pred EEEEEEcCCCCCChHHHHHHHHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEE---CCcc-
Confidence 46666663 5667777777776666676655332 122221111 12233334556888999999876 4532
Q ss_pred hhhhhcccccCCCCchhHhhhcCCe
Q 016961 160 RMKEFGLKSMWRSPNGTIRNILNGT 184 (380)
Q Consensus 160 ~~~~~~L~~~~~spn~~LRk~ldly 184 (380)
|.|..+.|..-||..
T Consensus 78 ----------~~s~pg~LKn~iD~l 92 (191)
T PRK10569 78 ----------KASFSGALKTLLDLL 92 (191)
T ss_pred ----------CCCCCHHHHHHHHhC
Confidence 556667899999964
No 39
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=35.03 E-value=32 Score=35.03 Aligned_cols=22 Identities=18% Similarity=0.028 Sum_probs=18.4
Q ss_pred ccccEEEEcCC--ccHHHHHHHHH
Q 016961 84 VQNPIVEMDGD--EMTRIIWQMIK 105 (380)
Q Consensus 84 ~~~~IvvlpGD--gIGpEV~~~~~ 105 (380)
|.++|++--|| ||||||+-.+.
T Consensus 1 ~~~~iaIT~GDpaGIGpEii~ka~ 24 (326)
T PRK03371 1 MTKIIAVTMGDPAGIGPEIIIKSL 24 (326)
T ss_pred CCCcEEEeCCCCcchHHHHHHHHh
Confidence 46789999999 99999886554
No 40
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=30.04 E-value=2.5e+02 Score=25.03 Aligned_cols=81 Identities=12% Similarity=0.117 Sum_probs=46.6
Q ss_pred EEEEcC----CccHHHHHHHHHHHHhcCCCCeEEEE-EecchHHHhhcCCCCc---HHHHHHHHhcCeeeecCCCCCCcc
Q 016961 88 IVEMDG----DEMTRIIWQMIKDKLIFPYLDLDIKY-YDLGILNRDATDDKVT---VESAEATLKYNVAIKCATITPDET 159 (380)
Q Consensus 88 IvvlpG----DgIGpEV~~~~~~~l~~~g~~i~~~~-~d~G~~~~d~tG~~lp---~etleaik~~da~lkGa~~tP~~~ 159 (380)
|++|-| ++....+.+.+.+.+.+.+.+++... .++...... .....+ ++..+.++++|+++++ +|..
T Consensus 2 il~I~gS~r~~S~t~~l~~~~~~~l~~~~~~~~~idl~~l~~~~~~-~~~~~~~~~~~l~~~i~~AD~iI~~---sP~Y- 76 (171)
T TIGR03567 2 VLTLSGSPSTPSRSSALLRHVREALQEQGVEVDHLSVRDLPAEDLL-FARFDSPAIKAATAQVAQADGVVVA---TPVY- 76 (171)
T ss_pred EEEEECCCCCCChHHHHHHHHHHHHHHCCCeEEEEEecCCChHHhh-hcCCCCHHHHHHHHHHHHCCEEEEE---CCcc-
Confidence 455555 36777777777776665565544332 223222111 111123 3446788899999876 3531
Q ss_pred hhhhhcccccCCCCchhHhhhcCC
Q 016961 160 RMKEFGLKSMWRSPNGTIRNILNG 183 (380)
Q Consensus 160 ~~~~~~L~~~~~spn~~LRk~ldl 183 (380)
|.|.-+.|..-+|.
T Consensus 77 ----------~~sip~~LK~~iD~ 90 (171)
T TIGR03567 77 ----------KASYSGVLKALLDL 90 (171)
T ss_pred ----------cCCCCHHHHHHHHh
Confidence 45666788888884
No 41
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=28.07 E-value=72 Score=32.39 Aligned_cols=35 Identities=11% Similarity=0.320 Sum_probs=28.1
Q ss_pred HHHHHHHhcCCCCEEEEeCCCcccccchhHHHHHHHHHHHhhh
Q 016961 271 ESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWR 313 (380)
Q Consensus 271 r~AFe~A~~rk~~Vt~v~KaNVLk~tdglf~~i~~eVa~~eY~ 313 (380)
.||+|+|+ |+-+|.++. + +.+....+..|+.+ +|+
T Consensus 64 ayA~eLAk-rG~nvvLIs-----R-t~~KL~~v~kEI~~-~~~ 98 (312)
T KOG1014|consen 64 AYARELAK-RGFNVVLIS-----R-TQEKLEAVAKEIEE-KYK 98 (312)
T ss_pred HHHHHHHH-cCCEEEEEe-----C-CHHHHHHHHHHHHH-HhC
Confidence 46999997 787899887 4 56778899999976 785
No 42
>COG2838 Icd Monomeric isocitrate dehydrogenase [Energy production and conversion]
Probab=27.51 E-value=1.5e+02 Score=32.27 Aligned_cols=104 Identities=20% Similarity=0.294 Sum_probs=62.3
Q ss_pred ecCCCceeeeecCCCCCCcceeee-cccCCcceeeecccCHHHHHHHHHHHHHHHhcCCCCEEEE-eCCCcccccchh-H
Q 016961 224 IKGPGKLKMVFDPEDGTGPVELDV-YNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLS-TKNTILKKYDGR-F 300 (380)
Q Consensus 224 ~~~~g~~e~~~~~~~g~~~~~~~v-~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk~~Vt~v-~KaNVLk~tdgl-f 300 (380)
+...+.+.+.|...+|... .++- ....+..+.+.++.+.+.-.-+...-.+-|+..+ -+.+. -|++.||-+|-. |
T Consensus 192 l~~a~~v~ie~~~kdG~~~-vlk~~~~l~~geiiD~~~mskkaL~~F~~~q~~dak~~g-VlfSlH~KATMMKVSdPiiF 269 (744)
T COG2838 192 LDQATDVRIEFTAKDGKKK-VLKPPVALQDGEIIDATFMSKKALCAFYEEQMQDAKATG-VLFSLHLKATMMKVSDPIIF 269 (744)
T ss_pred eccCccEEEEEEecCCcEE-EecCccccccccchHHHHhhHHHHHHHHHHHHHhhhhcC-eEEeehhhhhhhhccCceeh
Confidence 3344555566776666321 1111 1112345778888888887766666666665544 34444 499999988743 3
Q ss_pred ---HHH-HHHHHHHhhhcccCCCCeeEehhhHHH
Q 016961 301 ---KDI-FQQVYEERWRQKFEEHSIWYEHRLIDD 330 (380)
Q Consensus 301 ---~~i-~~eVa~~eY~~~~~~p~I~~e~~lIDa 330 (380)
-++ +.++.. +|.++|++-+|..+.-+.|-
T Consensus 270 GhaVk~fyk~~f~-k~~~~f~~lGvn~nNGl~~l 302 (744)
T COG2838 270 GHAVKVFYKDVFA-KHGDLFDALGVNVNNGLSDL 302 (744)
T ss_pred hHHHHHHHHHHHH-HHHHHHHHhCCCccccHHHH
Confidence 233 345555 68788888888877655543
No 43
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=27.26 E-value=54 Score=33.44 Aligned_cols=22 Identities=14% Similarity=0.138 Sum_probs=17.9
Q ss_pred ccccEEEEcCC--ccHHHHHHHHH
Q 016961 84 VQNPIVEMDGD--EMTRIIWQMIK 105 (380)
Q Consensus 84 ~~~~IvvlpGD--gIGpEV~~~~~ 105 (380)
++.+|++--|| ||||||+-.+.
T Consensus 3 ~~p~iaIT~GDpaGIGpEIi~ka~ 26 (332)
T PRK00232 3 MKPRIAITPGDPAGIGPELVAKLL 26 (332)
T ss_pred CCCcEEEeCCCCcccHHHHHHHHH
Confidence 34589999999 99999986664
No 44
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=26.84 E-value=55 Score=33.61 Aligned_cols=22 Identities=9% Similarity=-0.040 Sum_probs=18.2
Q ss_pred ccccEEEEcCC--ccHHHHHHHHH
Q 016961 84 VQNPIVEMDGD--EMTRIIWQMIK 105 (380)
Q Consensus 84 ~~~~IvvlpGD--gIGpEV~~~~~ 105 (380)
++.+|++--|| ||||||+-.+.
T Consensus 8 ~~p~IaIT~GDpaGIGPEii~ka~ 31 (345)
T PRK02746 8 PRPRLAITLGDPAGIGPEVILKAL 31 (345)
T ss_pred CCCcEEEeCCCCcchHHHHHHHHH
Confidence 33589999999 99999986664
No 45
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=26.27 E-value=56 Score=33.39 Aligned_cols=21 Identities=19% Similarity=0.050 Sum_probs=17.5
Q ss_pred cccEEEEcCC--ccHHHHHHHHH
Q 016961 85 QNPIVEMDGD--EMTRIIWQMIK 105 (380)
Q Consensus 85 ~~~IvvlpGD--gIGpEV~~~~~ 105 (380)
..+|++--|| ||||||+-.+.
T Consensus 3 ~p~iaIT~GDpaGIGpEii~ka~ 25 (336)
T PRK05312 3 MRPLALSLGDPAGIGPEIALKAW 25 (336)
T ss_pred CCeEEEeCCCCcchHHHHHHHHH
Confidence 4589999999 99999886554
No 46
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=25.50 E-value=59 Score=33.18 Aligned_cols=20 Identities=20% Similarity=-0.067 Sum_probs=17.0
Q ss_pred ccEEEEcCC--ccHHHHHHHHH
Q 016961 86 NPIVEMDGD--EMTRIIWQMIK 105 (380)
Q Consensus 86 ~~IvvlpGD--gIGpEV~~~~~ 105 (380)
.+|++--|| ||||||+-.+.
T Consensus 4 p~iaIT~GDpaGIGpEii~ka~ 25 (332)
T PRK03743 4 PIIAIPIGDPAGIGPEIVVKTL 25 (332)
T ss_pred CeEEEeCCCCcchHHHHHHHHH
Confidence 479999999 99999986664
No 47
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=25.13 E-value=99 Score=26.48 Aligned_cols=82 Identities=18% Similarity=0.132 Sum_probs=49.0
Q ss_pred cEEEEcCC----ccHHHHHHHHHHHHhcCCCCeEEEEEecch---HHHhh------cCCCCcHHHHHHHHhcCeeeecCC
Q 016961 87 PIVEMDGD----EMTRIIWQMIKDKLIFPYLDLDIKYYDLGI---LNRDA------TDDKVTVESAEATLKYNVAIKCAT 153 (380)
Q Consensus 87 ~IvvlpGD----gIGpEV~~~~~~~l~~~g~~i~~~~~d~G~---~~~d~------tG~~lp~etleaik~~da~lkGa~ 153 (380)
+|++|-|- |.+..+.+.+.+.+.+.++++ +.+++.. ...+. .-..-.++..+.++++|+++++.
T Consensus 2 kilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~--~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~s- 78 (152)
T PF03358_consen 2 KILIINGSPRKNSNTRKLAEAVAEQLEEAGAEV--EVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFAS- 78 (152)
T ss_dssp EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEE--EEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEE-
T ss_pred EEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEE--EEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEee-
Confidence 35555553 888999999988776665444 4445443 11111 11223355578899999998764
Q ss_pred CCCCcchhhhhcccccCCCCchhHhhhcCCe
Q 016961 154 ITPDETRMKEFGLKSMWRSPNGTIRNILNGT 184 (380)
Q Consensus 154 ~tP~~~~~~~~~L~~~~~spn~~LRk~ldly 184 (380)
|.. |.++...+..-+|..
T Consensus 79 --P~y-----------~~~~s~~lK~~lD~~ 96 (152)
T PF03358_consen 79 --PVY-----------NGSVSGQLKNFLDRL 96 (152)
T ss_dssp --EEB-----------TTBE-HHHHHHHHTH
T ss_pred --cEE-----------cCcCChhhhHHHHHh
Confidence 321 344556788888743
No 48
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=24.96 E-value=46 Score=33.61 Aligned_cols=19 Identities=21% Similarity=-0.015 Sum_probs=16.2
Q ss_pred ccEEEEcCC--ccHHHHHHHH
Q 016961 86 NPIVEMDGD--EMTRIIWQMI 104 (380)
Q Consensus 86 ~~IvvlpGD--gIGpEV~~~~ 104 (380)
.+|++--|| ||||||+-.+
T Consensus 2 p~iaiT~GDpaGIGpEii~ka 22 (307)
T PRK03946 2 KKIAISIGDINGIGLEIALKS 22 (307)
T ss_pred CeEEEcCCCCcccHHHHHHHh
Confidence 478999999 9999998655
No 49
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=24.35 E-value=1.1e+02 Score=24.74 Aligned_cols=27 Identities=15% Similarity=0.071 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCEEEEeCC
Q 016961 264 ESIRAFAESSMSLAFSKKWPLYLSTKN 290 (380)
Q Consensus 264 ~~ieRIar~AFe~A~~rk~~Vt~v~Ka 290 (380)
+.+++++++|+.+|...+.+|+++|=-
T Consensus 10 ~~~~~~l~~a~~la~~~~~~v~ll~v~ 36 (132)
T cd01988 10 NTARDLLELAAALARAQNGEIIPLNVI 36 (132)
T ss_pred hhHHHHHHHHHHHhhcCCCeEEEEEEE
Confidence 568999999999998877787776643
No 50
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=23.34 E-value=3.3e+02 Score=26.69 Aligned_cols=105 Identities=8% Similarity=-0.004 Sum_probs=57.8
Q ss_pred cccCHHHHHHHHHHHHHHHhcCCCCEEEEeCCCcccccchhHHHHHHHHHHHhhhcccCCCC---eeEehhhHHHHHHHH
Q 016961 259 MYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHS---IWYEHRLIDDMVAYA 335 (380)
Q Consensus 259 ~~~Tr~~ieRIar~AFe~A~~rk~~Vt~v~KaNVLk~tdglf~~i~~eVa~~eY~~~~~~p~---I~~e~~lIDa~a~~L 335 (380)
.+|.+..-+.+.++.-+.|..-..+|.+-+..++ .+=-+.+.++++ ++ |. |+...--++.+...+
T Consensus 108 P~y~~~s~~~i~~~f~~v~~a~~~pvilYn~~g~-----~l~~~~~~~La~-~~------~nvvgiKds~~d~~~~~~~~ 175 (296)
T TIGR03249 108 PYLINGEQEGLYAHVEAVCESTDLGVIVYQRDNA-----VLNADTLERLAD-RC------PNLVGFKDGIGDMEQMIEIT 175 (296)
T ss_pred CCCCCCCHHHHHHHHHHHHhccCCCEEEEeCCCC-----CCCHHHHHHHHh-hC------CCEEEEEeCCCCHHHHHHHH
Confidence 3343333455666666666655678888762221 122366777765 56 65 455545555543322
Q ss_pred HHCCCCc-EEEeCCchhhH-HHhhhhhccCCccccCCCCCCCCCC
Q 016961 336 IKSEGGY-VWACKNYDGDV-QSDLLAQGTVSAHSSAFEVSRAPNF 378 (380)
Q Consensus 336 Vk~P~~F-ViVt~NLfGDI-LSDlaA~l~GsLGlap~~~~~~p~~ 378 (380)
-..+..| |+.....+.+. +..+. .|+-|..+.-+|+.|+.
T Consensus 176 ~~~~~~~~v~~G~~~~d~~~~~~~~---~Ga~G~is~~~n~~P~~ 217 (296)
T TIGR03249 176 QRLGDRLGYLGGMPTAEVTAPAYLP---LGVTSYSSAIFNFIPHI 217 (296)
T ss_pred HHcCCCeEEEeCCCcchhhHHHHHh---CCCCEEEecHHHhhHHH
Confidence 2346689 55554443334 33333 46667777778998873
No 51
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=23.00 E-value=85 Score=24.92 Aligned_cols=26 Identities=19% Similarity=0.068 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEe
Q 016961 263 DESIRAFAESSMSLAFSKKWPLYLST 288 (380)
Q Consensus 263 r~~ieRIar~AFe~A~~rk~~Vt~v~ 288 (380)
.+.+++.+++|+++|...+.+|+++|
T Consensus 12 ~~~~~~al~~a~~la~~~~~~i~~l~ 37 (140)
T PF00582_consen 12 SEESRRALRFALELAKRSGAEITLLH 37 (140)
T ss_dssp SHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHhhCCeEEEEE
Confidence 45577999999999999887766665
No 52
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=22.57 E-value=77 Score=28.30 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=19.3
Q ss_pred cEEEEcCC--ccHHHHHHHHHHHH
Q 016961 87 PIVEMDGD--EMTRIIWQMIKDKL 108 (380)
Q Consensus 87 ~IvvlpGD--gIGpEV~~~~~~~l 108 (380)
+|+||+|- |||..+++.+++.+
T Consensus 1 ~I~VIDGQGGGiG~~iv~~lr~~~ 24 (131)
T PF12953_consen 1 RIAVIDGQGGGIGKQIVEKLRKEL 24 (131)
T ss_pred CEEEEeCCCChhHHHHHHHHHHhC
Confidence 58999988 89999999998864
No 53
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=20.16 E-value=5.7e+02 Score=22.67 Aligned_cols=81 Identities=14% Similarity=0.085 Sum_probs=47.3
Q ss_pred cEEEEcCC----ccHHHHHHHHHHHHh-cCCCCeEEEEEecch---HHHhh-cCCCCcH---HHHHHHHhcCeeeecCCC
Q 016961 87 PIVEMDGD----EMTRIIWQMIKDKLI-FPYLDLDIKYYDLGI---LNRDA-TDDKVTV---ESAEATLKYNVAIKCATI 154 (380)
Q Consensus 87 ~IvvlpGD----gIGpEV~~~~~~~l~-~~g~~i~~~~~d~G~---~~~d~-tG~~lp~---etleaik~~da~lkGa~~ 154 (380)
+|++|-|- +....+.+.+.+.+. ..++++++ +|+.. ..... .....|+ +..+.++++|+++.+
T Consensus 1 kIl~i~GS~r~~s~t~~l~~~~~~~l~~~~g~ev~~--idL~~~~~~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~--- 75 (174)
T TIGR03566 1 KVVGVSGSLTRPSRTLALVEALVAELAARLGISPRT--IDLADLAPSLGGALWRSQLPPDAERILQAIESADLLVVG--- 75 (174)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHhcCCeEEE--EEhhhcChhhccccccCCCCHHHHHHHHHHHHCCEEEEE---
Confidence 35666662 667777777776654 34655543 34322 11100 1122554 456888899999876
Q ss_pred CCCcchhhhhcccccCCCCchhHhhhcCC
Q 016961 155 TPDETRMKEFGLKSMWRSPNGTIRNILNG 183 (380)
Q Consensus 155 tP~~~~~~~~~L~~~~~spn~~LRk~ldl 183 (380)
||.. |.|.-+.|..-+|.
T Consensus 76 tP~Y-----------~~s~~~~LKn~lD~ 93 (174)
T TIGR03566 76 SPVY-----------RGSYTGLFKHLFDL 93 (174)
T ss_pred CCcC-----------cCcCcHHHHHHHHh
Confidence 4532 45666789999994
No 54
>PRK15005 universal stress protein F; Provisional
Probab=20.14 E-value=1.4e+02 Score=24.92 Aligned_cols=27 Identities=11% Similarity=-0.056 Sum_probs=20.4
Q ss_pred CHHH-HHHHHHHHHHHHhcCCCCEEEEe
Q 016961 262 VDES-IRAFAESSMSLAFSKKWPLYLST 288 (380)
Q Consensus 262 Tr~~-ieRIar~AFe~A~~rk~~Vt~v~ 288 (380)
|+.+ +++.+++|+++|+..+.+|+++|
T Consensus 12 s~~~~~~~a~~~a~~la~~~~~~l~ll~ 39 (144)
T PRK15005 12 SDSELTQRVISHVEAEAKIDDAEVHFLT 39 (144)
T ss_pred CchhHHHHHHHHHHHHHhccCCeEEEEE
Confidence 3443 68899999999988777777655
No 55
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=20.03 E-value=87 Score=31.96 Aligned_cols=20 Identities=10% Similarity=-0.060 Sum_probs=17.0
Q ss_pred ccEEEEcCC--ccHHHHHHHHH
Q 016961 86 NPIVEMDGD--EMTRIIWQMIK 105 (380)
Q Consensus 86 ~~IvvlpGD--gIGpEV~~~~~ 105 (380)
.+|++--|| ||||||+-.+.
T Consensus 6 p~iaIT~GDpaGIGpEii~kal 27 (329)
T PRK01909 6 LQIAITTGEPAGVGPELTVRAL 27 (329)
T ss_pred CeEEEeCCCCcchHHHHHHHHH
Confidence 379999999 99999986664
Done!