Query 016961
Match_columns 380
No_of_seqs 150 out of 1273
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 06:39:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016961.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016961hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3us8_A Isocitrate dehydrogenas 100.0 1.4E-88 4.8E-93 689.0 21.6 296 80-377 25-320 (427)
2 1lwd_A Isocitrate dehydrogenas 100.0 2.6E-86 8.7E-91 671.0 21.8 297 80-377 3-299 (413)
3 4aoy_A Isocitrate dehydrogenas 100.0 1.4E-86 4.9E-91 669.9 19.6 296 80-377 2-297 (402)
4 2uxq_A Isocitrate dehydrogenas 100.0 3E-85 1E-89 661.3 21.9 295 81-377 2-296 (402)
5 1zor_A Isocitrate dehydrogenas 100.0 5.1E-84 1.7E-88 651.9 21.4 293 80-377 2-294 (399)
6 2qfy_A Isocitrate dehydrogenas 100.0 3.1E-80 1.1E-84 628.6 20.5 297 79-377 16-315 (427)
7 1x0l_A Homoisocitrate dehydrog 100.0 1E-78 3.5E-83 600.0 21.5 247 86-377 2-251 (333)
8 1w0d_A 3-isopropylmalate dehyd 100.0 8.8E-79 3E-83 601.5 17.8 254 86-377 2-260 (337)
9 2y3z_A 3-isopropylmalate dehyd 100.0 1.1E-77 3.9E-82 597.4 19.0 252 86-377 4-268 (359)
10 3flk_A Tartrate dehydrogenase/ 100.0 9.5E-78 3.2E-82 599.1 17.9 257 84-377 4-273 (364)
11 3dms_A Isocitrate dehydrogenas 100.0 2.5E-77 8.4E-82 606.7 20.2 277 84-377 35-341 (427)
12 1hqs_A Isocitrate dehydrogenas 100.0 8.8E-78 3E-82 609.3 16.7 271 86-377 20-335 (423)
13 3u1h_A 3-isopropylmalate dehyd 100.0 1.4E-77 4.9E-82 600.8 18.0 258 83-377 21-291 (390)
14 3ty4_A Probable homoisocitrate 100.0 7.5E-77 2.6E-81 592.5 21.9 253 85-377 10-284 (366)
15 3vmk_A 3-isopropylmalate dehyd 100.0 2.8E-77 9.5E-82 597.2 17.1 260 83-377 11-284 (375)
16 2e0c_A 409AA long hypothetical 100.0 4.4E-77 1.5E-81 602.3 18.4 273 80-377 17-322 (409)
17 3blx_A Isocitrate dehydrogenas 100.0 1.5E-77 5E-82 594.7 14.5 250 81-377 13-265 (349)
18 2d1c_A Isocitrate dehydrogenas 100.0 1.4E-76 4.9E-81 606.9 22.1 254 79-377 9-272 (496)
19 3blx_B Isocitrate dehydrogenas 100.0 1.2E-77 4E-82 596.3 13.7 251 81-377 17-273 (354)
20 2iv0_A Isocitrate dehydrogenas 100.0 1.8E-77 6.2E-82 605.3 14.9 273 80-377 20-325 (412)
21 2d4v_A Isocitrate dehydrogenas 100.0 1.2E-76 4.1E-81 601.6 19.7 270 86-377 27-344 (429)
22 1cnz_A IPMDH, IMDH, protein (3 100.0 8.8E-77 3E-81 592.2 17.8 257 86-377 5-275 (363)
23 3r8w_A 3-isopropylmalate dehyd 100.0 7.4E-77 2.5E-81 598.4 15.6 260 83-377 40-312 (405)
24 1tyo_A Isocitrate dehydrogenas 100.0 2.8E-76 9.7E-81 599.7 18.7 273 86-377 36-335 (435)
25 3udu_A 3-isopropylmalate dehyd 100.0 1.2E-76 4.1E-81 590.1 15.2 252 86-377 7-272 (361)
26 1vlc_A 3-isopropylmalate dehyd 100.0 2E-76 6.7E-81 589.5 16.7 250 87-375 14-277 (366)
27 1wpw_A 3-isopropylmalate dehyd 100.0 9.7E-76 3.3E-80 579.3 19.8 241 86-377 2-248 (336)
28 1a05_A IPMDH, IMDH, 3-isopropy 100.0 1.5E-75 5.2E-80 582.6 16.5 255 86-376 2-269 (358)
29 2b0t_A NADP isocitrate dehydro 67.8 6.3 0.00022 41.6 5.6 115 211-328 173-296 (738)
30 1itw_A Isocitrate dehydrogenas 66.1 6.2 0.00021 41.6 5.2 112 211-325 175-295 (741)
31 2qfy_A Isocitrate dehydrogenas 62.8 1.4 4.6E-05 44.8 -0.4 16 203-218 156-171 (427)
32 1yxo_A 4-hydroxythreonine-4-ph 33.1 25 0.00084 34.4 3.1 20 85-104 2-23 (328)
33 3u7r_A NADPH-dependent FMN red 29.7 1.5E+02 0.005 26.1 7.4 84 84-184 1-93 (190)
34 1e2b_A Enzyme IIB-cellobiose; 25.7 1.4E+02 0.0049 23.7 6.1 56 86-154 4-60 (106)
35 2hi1_A 4-hydroxythreonine-4-ph 25.7 41 0.0014 32.9 3.2 19 87-105 8-28 (330)
36 3lxy_A 4-hydroxythreonine-4-ph 24.2 35 0.0012 33.4 2.4 79 260-350 179-271 (334)
37 3dlo_A Universal stress protei 23.6 95 0.0032 25.4 4.7 26 263-288 35-60 (155)
38 3k1y_A Oxidoreductase; structu 22.8 2.8E+02 0.0095 24.1 7.9 84 86-183 12-110 (191)
39 4aty_A Terephthalate 1,2-CIS-d 22.2 54 0.0018 31.9 3.3 19 87-105 10-30 (349)
40 2b0t_A NADP isocitrate dehydro 20.8 4.3E+02 0.015 28.1 9.7 98 254-359 450-551 (738)
No 1
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti}
Probab=100.00 E-value=1.4e-88 Score=688.97 Aligned_cols=296 Identities=65% Similarity=1.120 Sum_probs=278.3
Q ss_pred ccccccccEEEEcCCccHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcc
Q 016961 80 DRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDET 159 (380)
Q Consensus 80 ~~~~~~~~IvvlpGDgIGpEV~~~~~~~l~~~g~~i~~~~~d~G~~~~d~tG~~lp~etleaik~~da~lkGa~~tP~~~ 159 (380)
+||||++||++|||||||||||++++++|.+++++|+|+++++|.++|++||+++|+|++++|+++||+||||++||..+
T Consensus 25 ~~i~~~~~I~vipGDGIGpEI~~~~~~vL~~~~~~i~~~~~~~G~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~~ 104 (427)
T 3us8_A 25 AKIKVANPVVELDGDEMTRIIWQFIKDKLIHPYLDLDLEYYDLGVENRDATDDQVTIDAANAIKKHGVGVKCATITPDEG 104 (427)
T ss_dssp CCEECCSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHH
T ss_pred ccccccceEEEEcCCcccHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCCcc
Confidence 69999999999999999999999999999989999999999999999999999999999999999999999999999988
Q ss_pred hhhhhcccccCCCCchhHhhhcCCeEEeeecccCCCCCCCCCCCCCEEEEeeccCccccccceeecCCCceeeeecCCCC
Q 016961 160 RMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDG 239 (380)
Q Consensus 160 ~~~~~~L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~~~~~~divIvREnteG~Y~g~e~~~~~~g~~e~~~~~~~g 239 (380)
++++++++++|+|||++||++||||+|+|||.|+++|++.++|+.||||+||||||+|+|+|+.+.++|+.++.|.+++|
T Consensus 105 ~~~e~~l~~~~~s~n~~LRk~LdlyanvRPv~~~~ip~~~~~~~~DivIvREnteg~Y~g~e~~~~~~~~~~l~~~~~~G 184 (427)
T 3us8_A 105 RVEEFKLKKMWKSPNGTIRNILGGVIFREPIICKNVPRLVPGWTKPIIVGRHAFGDQYRATDFKFPGKGKLSIKFVGEDG 184 (427)
T ss_dssp HHHHHTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEETTS
T ss_pred ccccccccccccCchHHHHHHhCCeEEecceeccCCCCCCCCCCCCEEEEEeCCCCccCCceeEEecCCcceeeeecccc
Confidence 88888899999999999999999999999986689998888888999999999999999999998888887777777666
Q ss_pred CCcceeeecccCCcceeeecccCHHHHHHHHHHHHHHHhcCCCCEEEEeCCCcccccchhHHHHHHHHHHHhhhcccCCC
Q 016961 240 TGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEH 319 (380)
Q Consensus 240 ~~~~~~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk~~Vt~v~KaNVLk~tdglf~~i~~eVa~~eY~~~~~~p 319 (380)
.....++++|++.+++++++||+++++||+|+||+||++|+++||+|||+||||.|||+|+++|+|||+++|.++|++|
T Consensus 185 -~~~~~~~~~~~~~~va~~~~~T~~~~eRiar~AFe~A~~r~kkVt~v~KaNIlk~tdglfr~~~~eva~~eYp~~~~~~ 263 (427)
T 3us8_A 185 -QTIEHDVYDAPGAGVALAMYNLDESITEFARASFNYGLQRKVPVYLSTKNTILKAYDGRFKDIFQKVFDEEFAAQFKAE 263 (427)
T ss_dssp -CEEEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHHT
T ss_pred -ccccccccccCCCcEEEEEeeCHHHHHHHHHHHHHHHHHcCCcEEEEECcccchhhhhHHHHHHHHHHHHhCccccCCC
Confidence 4445667778877888999999999999999999999999999999999999999999999999999987898888888
Q ss_pred CeeEehhhHHHHHHHHHHCCCCcEEEeCCchhhHHHhhhhhccCCccccCCCCCCCCC
Q 016961 320 SIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPN 377 (380)
Q Consensus 320 ~I~~e~~lIDa~a~~LVk~P~~FViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~p~ 377 (380)
+|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+ ||||++|+
T Consensus 264 ~I~~~~~~VD~~~mqlv~~P~~FVivt~NlfGDIlSD~aA~l~GslGl~-pSanig~~ 320 (427)
T 3us8_A 264 KLWYEHRLIDDMVASALKWSGGYVWACKNYDGDVQSDIVAQGFGSLGLM-TSVLMTPD 320 (427)
T ss_dssp TCCEEEEEHHHHHHHHHHSCCCEEEEECHHHHHHHHHHHHHHHSCTTSE-EEEEECTT
T ss_pred CeEEEEEEHHHHHHHHhhCCCCcEEEeCCcCCcHHHHHHHHhcCChhhC-ceeEECCC
Confidence 9999999999999999999999999999999999999999999999999 68999987
No 2
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A*
Probab=100.00 E-value=2.6e-86 Score=671.04 Aligned_cols=297 Identities=64% Similarity=1.138 Sum_probs=271.3
Q ss_pred ccccccccEEEEcCCccHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcc
Q 016961 80 DRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDET 159 (380)
Q Consensus 80 ~~~~~~~~IvvlpGDgIGpEV~~~~~~~l~~~g~~i~~~~~d~G~~~~d~tG~~lp~etleaik~~da~lkGa~~tP~~~ 159 (380)
+||+|++||++|||||||||||++++++|+.++++|+|+++++|+++|++||+++|+|++++|+++|++||||++||+.+
T Consensus 3 ~~i~~~~~i~~l~GDgiGpei~~~~~~vl~~~~~~~~~~~~~~G~~~~~~~g~~lp~etl~~ik~~da~LkGav~tP~~~ 82 (413)
T 1lwd_A 3 QRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEA 82 (413)
T ss_dssp CCEECSSCEEEEECCHHHHHHHHHHHHHTTTTTEECCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHH
T ss_pred CcceecccEEEecCCChhHHHHHHHHHHHHhCCCCeEEEEEecCHHHHhccCCcCcHHHHHHHHHCCEEEECCccCCCcc
Confidence 59999999999999999999999999999888999999999999999999999999999999999999999999999876
Q ss_pred hhhhhcccccCCCCchhHhhhcCCeEEeeecccCCCCCCCCCCCCCEEEEeeccCccccccceeecCCCceeeeecCCCC
Q 016961 160 RMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDG 239 (380)
Q Consensus 160 ~~~~~~L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~~~~~~divIvREnteG~Y~g~e~~~~~~g~~e~~~~~~~g 239 (380)
+++++.|+++|+|||++||++||||+|+|||+++++|++.++|+.||+|+||||||+|+|+|+.+.++|..++.|.+++|
T Consensus 83 ~~~~~~~~~~~~s~~l~LR~~ldlyan~RPv~~~~~~~~~~~~~~divIvRe~t~g~Y~g~d~~~~~e~~~~~~~~~~~g 162 (413)
T 1lwd_A 83 RVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDG 162 (413)
T ss_dssp HHHHHTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEETTC
T ss_pred cCccccccccccCccHHHHHhcCCEEEEeeeeccCCCCCCCCCCCceEEEecccCCccCCceeEeccCCcceeeEeccCC
Confidence 66666566689999999999999999999997788988877788999999999999999999999888877777776655
Q ss_pred CCcceeeecccCCcceeeecccCHHHHHHHHHHHHHHHhcCCCCEEEEeCCCcccccchhHHHHHHHHHHHhhhcccCCC
Q 016961 240 TGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEH 319 (380)
Q Consensus 240 ~~~~~~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk~~Vt~v~KaNVLk~tdglf~~i~~eVa~~eY~~~~~~p 319 (380)
+...+..++.++++++.++++||+++++||+|+||+||++|+++||+|||+||||.|||+|+++|+|||+++|.++|++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNVlk~sdglf~~~~~eva~~eypd~~~~~ 242 (413)
T 1lwd_A 163 SSAKQWEVYNFPAGGVGMGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKY 242 (413)
T ss_dssp CCCEEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHHT
T ss_pred cccccccccccCCCcEEEEEEEcHHHHHHHHHHHHHHHHHhCCceEEEECCcchhhHHHHHHHHHHHHHHHhCCCcccCC
Confidence 33345556666677889999999999999999999999999889999999999999999999999999944895555444
Q ss_pred CeeEehhhHHHHHHHHHHCCCCcEEEeCCchhhHHHhhhhhccCCccccCCCCCCCCC
Q 016961 320 SIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPN 377 (380)
Q Consensus 320 ~I~~e~~lIDa~a~~LVk~P~~FViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~p~ 377 (380)
+|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+ ||+|++|+
T Consensus 243 ~I~~~~~~VD~~~mqlv~~P~~FVivt~NlfGDILSD~aA~l~GslGl~-pSanig~~ 299 (413)
T 1lwd_A 243 KIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLM-TSVLVCPD 299 (413)
T ss_dssp TCCEEEEEHHHHHHHHHHSCCCEEEEECHHHHHHHHHHHHHHHTCTTSE-EEEEECTT
T ss_pred eEEEEEEEHHHHHHHHhcCCCceEEEecccccchHHHHHHhhcCCcccc-ccceeCCC
Confidence 5999999999999999999999999999999999999999999999999 78999986
No 3
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A
Probab=100.00 E-value=1.4e-86 Score=669.92 Aligned_cols=296 Identities=51% Similarity=0.919 Sum_probs=270.3
Q ss_pred ccccccccEEEEcCCccHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcc
Q 016961 80 DRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDET 159 (380)
Q Consensus 80 ~~~~~~~~IvvlpGDgIGpEV~~~~~~~l~~~g~~i~~~~~d~G~~~~d~tG~~lp~etleaik~~da~lkGa~~tP~~~ 159 (380)
+||||++||++|||||||||+|+.++++++.++++|+|+++|+|.+++++||+++|+|++++|+++||+||||++||++.
T Consensus 2 ~~i~~~~~i~~i~GDei~~e~~~~i~~v~~~~~~~i~~~~~d~G~~~~~~tg~~lp~etl~aik~~~v~lkGa~~tP~~~ 81 (402)
T 4aoy_A 2 SKIKMKVPLVEMDGDEMTRIIWRLIKENLLEPYIELNTEYYDLGLENRDKTEDQVTIDAARAIQKYGVGVKCATITPNAQ 81 (402)
T ss_dssp CCEECSSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHHTTHHHHHHHHHHHHHSEEEECCCCCCCHH
T ss_pred CcccccCcEEEECCCchHHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECcccCCCcc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhhhcccccCCCCchhHhhhcCCeEEeeecccCCCCCCCCCCCCCEEEEeeccCccccccceeecCCCceeeeecCCCC
Q 016961 160 RMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDG 239 (380)
Q Consensus 160 ~~~~~~L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~~~~~~divIvREnteG~Y~g~e~~~~~~g~~e~~~~~~~g 239 (380)
++++++|+++|+|||++||++||||+|+|||.++++|++.++|+.||||+||||||+|+|.|+....++.+++.|.+++|
T Consensus 82 ~~~~~~l~~~~~s~n~~LR~~Ldlyan~rPv~~~~i~~~~~~~~~DivIvREnteg~Y~g~e~~~~~~~~~~~~~~~~~g 161 (402)
T 4aoy_A 82 RVEEYNLKKMWKSPNGTIRAILDGTVFRAPIVVNSIKPFVKGWKKPISIARHAYGDVYKNVEYYVPSAGKAELVFTSENG 161 (402)
T ss_dssp HHHHTTCSSCCCCHHHHHHHHHTCEEEEEECCCTTSCCSBTTCCBCCEEEEC------CCEEEEECSCEEEEEEEEETTS
T ss_pred ccccccccccccChHHHHHHHhCCeEEeeeEeccCCCCcCCCCCCCEEEEEeccCCeecCceeeccCccceeeeeeccCC
Confidence 88899898999999999999999999999986677777666778999999999999999999998888888887877766
Q ss_pred CCcceeeecccCCcceeeecccCHHHHHHHHHHHHHHHhcCCCCEEEEeCCCcccccchhHHHHHHHHHHHhhhcccCCC
Q 016961 240 TGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEH 319 (380)
Q Consensus 240 ~~~~~~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk~~Vt~v~KaNVLk~tdglf~~i~~eVa~~eY~~~~~~p 319 (380)
.. ...++++|++.+++++++||+++++||+|+||+||++|+++||+|||+||||.|||+|+++|+|||+++|.++|++|
T Consensus 162 ~~-~~~~~~~~~~~gv~~~~~~t~~~~eRiar~AF~~A~~~~~~vt~v~KaNilk~tdglf~~~~~eva~~eyp~~~~~~ 240 (402)
T 4aoy_A 162 EV-SRQTIHEFDGPGVIMGMHNTDKSIRSFARACFNYALDMNQDLWFSTKDTISKTYDHRFKDIFQEIYENEYKEKFEAK 240 (402)
T ss_dssp CE-EEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSHHHHHHHHHHHHHHHHHHTHHHHHHT
T ss_pred cc-cccccccccCCeeEEEEEecHHHHHHHHHHHHHHHHHcCCcEEEEECCccchhhhhHHHHHHHHHHHHhCcccccCC
Confidence 43 44566777888999999999999999999999999999999999999999999999999999999987898888888
Q ss_pred CeeEehhhHHHHHHHHHHCCCCcEEEeCCchhhHHHhhhhhccCCccccCCCCCCCCC
Q 016961 320 SIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPN 377 (380)
Q Consensus 320 ~I~~e~~lIDa~a~~LVk~P~~FViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~p~ 377 (380)
+|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+ ||+|++|+
T Consensus 241 ~i~~~~~~vD~~~~~lv~~P~~fVivt~Nl~GDIlSD~~A~l~GslGl~-psanig~~ 297 (402)
T 4aoy_A 241 NLQYFYTLIDDAVARIIRSEGGMVWACKNYDGDVMSDMVASAFGSLAMM-TSVLVSPD 297 (402)
T ss_dssp TCCEEEEEHHHHHHHHHTSCBCSEEECCC-CHHHHHHHHHHHHSCTTSE-EEEEECTT
T ss_pred CeEEEEEEHHHHHHHHhhCCCCcEEEECCcchHHHHHHHHHhcCchhhc-cccccCCC
Confidence 9999999999999999999999999999999999999999999999999 78999986
No 4
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A*
Probab=100.00 E-value=3e-85 Score=661.30 Aligned_cols=295 Identities=44% Similarity=0.825 Sum_probs=267.0
Q ss_pred cccccccEEEEcCCccHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcch
Q 016961 81 RVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETR 160 (380)
Q Consensus 81 ~~~~~~~IvvlpGDgIGpEV~~~~~~~l~~~g~~i~~~~~d~G~~~~d~tG~~lp~etleaik~~da~lkGa~~tP~~~~ 160 (380)
||+|++||++|||||||||||++++++|++++++|+|+++++|+++|++||+++|+|++++|+++|++||||++||+.++
T Consensus 2 ~~~~~~~i~~i~GDgig~ei~~~~~~vl~~~~~~~~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkGav~tP~~~~ 81 (402)
T 2uxq_A 2 KIQMKTPLVELDGDEMTRVLWPLIKDKLLLPFIDLQTEYYDLGIEERDRTNDQITIDAAEAIKKYGVGVKNATITPNQDR 81 (402)
T ss_dssp CBCCSSCEEEEECCHHHHHHHHHHHHHHTTTTBCCCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHHH
T ss_pred ceeeecceEEecCCCccHHHHHHHHHHHHhCCCCeEEEEEecCHHHHHhhCCcCCHHHHHHHHhCCEEEECCccCCCccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred hhhhcccccCCCCchhHhhhcCCeEEeeecccCCCCCCCCCCCCCEEEEeeccCccccccceeecCCCceeeeecCCCCC
Q 016961 161 MKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGT 240 (380)
Q Consensus 161 ~~~~~L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~~~~~~divIvREnteG~Y~g~e~~~~~~g~~e~~~~~~~g~ 240 (380)
+++++|+++|+|||++||++||||+|+|||+++++|++.++|+.||+|+||||||+|+|.|+.+.++|..++.+..++|
T Consensus 82 ~~~~~~~~~~~s~~l~LR~~ldlyan~RPv~~~~~~~~~~~~~~divIvRE~teg~Y~g~e~~~~~~g~~~~~~~~~~g- 160 (402)
T 2uxq_A 82 VEEYGLKEQWKSPNATVRAMLDGTVFRKPIMVKNIKPSVRSWQKPIVVGRHAYGDFYKNAEIFAEAGGKLEIVVTDKNG- 160 (402)
T ss_dssp HHHHTCSSCCCCHHHHHHHHHCCEEEEEECCCTTCCCSBTTCCSCCEEEEECSCGGGGCEEEEETTCEEEEEEEECTTS-
T ss_pred CccccccccccCchHHHHHHhCCeEEEEEEEcCCCCCCCCCCCCCeEEEeccCCCcccCcceeeccCCcceeeeeccCC-
Confidence 7776666789999999999999999999997778887766678999999999999999999998777766666666555
Q ss_pred CcceeeecccCCcceeeecccCHHHHHHHHHHHHHHHhcCCCCEEEEeCCCcccccchhHHHHHHHHHHHhhhcccCCCC
Q 016961 241 GPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHS 320 (380)
Q Consensus 241 ~~~~~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk~~Vt~v~KaNVLk~tdglf~~i~~eVa~~eY~~~~~~p~ 320 (380)
...+..+++++++++.+.++||+++++||+|+||+||++|+++||+|||+||||.|||+|+++|+|||+++|.++|++.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNVlk~sdglf~~~~~eva~~eypd~~~~~~ 240 (402)
T 2uxq_A 161 KETRQTIMEVDEPAIVQGIHNTVASIGHFARACFEYSLDQKIDCWFATKDTISKQYDQRFKIIFEEIFAQEYKEKFAAAG 240 (402)
T ss_dssp CEEEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHHHT
T ss_pred ccccccccccCCCceEEEEEECHHHHHHHHHHHHHHHHHcCCcEEEEECCCcchhhHHHHHHHHHHHHHHhCCCcccCCe
Confidence 33445566667778899999999999999999999999998899999999999999999999999999548933333333
Q ss_pred eeEehhhHHHHHHHHHHCCCCcEEEeCCchhhHHHhhhhhccCCccccCCCCCCCCC
Q 016961 321 IWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPN 377 (380)
Q Consensus 321 I~~e~~lIDa~a~~LVk~P~~FViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~p~ 377 (380)
|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+ ||+|++|+
T Consensus 241 I~~~~~~vD~~~mqlv~~P~~fVivt~NlfGDIlSD~aA~l~GslGl~-pSanig~~ 296 (402)
T 2uxq_A 241 IEYFYTLIDDVVARMMKTEGGMLWACKNYDGDVMSDMVASAFGSLAMM-SSVLVSPY 296 (402)
T ss_dssp CCEEEEEHHHHHHHHTTCCCCSEEEECHHHHHHHHHHHHHHHTCTTSE-EEEEECTT
T ss_pred EEEEEEEHHHHHHHHccCCCceEEEEcccchHHHHHHHHHhcCCcccc-ccceecCC
Confidence 999999999999999999999999999999999999999999999999 78999986
No 5
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima}
Probab=100.00 E-value=5.1e-84 Score=651.94 Aligned_cols=293 Identities=49% Similarity=0.899 Sum_probs=264.4
Q ss_pred ccccccccEEEEcCCccHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcc
Q 016961 80 DRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDET 159 (380)
Q Consensus 80 ~~~~~~~~IvvlpGDgIGpEV~~~~~~~l~~~g~~i~~~~~d~G~~~~d~tG~~lp~etleaik~~da~lkGa~~tP~~~ 159 (380)
+||+|++||++|||||||||||++++++|++++++|+|+++++|+++|++||+++|+|++++|+++|++||||++||++.
T Consensus 2 ~~~~~~~~I~~l~GDgiG~ei~~~v~~~l~~~~~~~~~~~~~~G~~~~~~~g~~lp~etl~~ik~~da~lkGav~tP~~~ 81 (399)
T 1zor_A 2 EKVKVKNPIVELDGDEMARVMWKMIKEKLILPYLDIQLVYFDLGIKKRDETDDQITIEAAKAIKKYGVGVKCATITPDAE 81 (399)
T ss_dssp CCEECCSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHH
T ss_pred CcccccccEEEecCCcccHHHHHHHHHHHHhCCCCeEEEEEeCCHHHHhccCCcCcHHHHHHHHHCCEEEEcCccCCCcc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999866
Q ss_pred hhhhhcccccCCCCchhHhhhcCCeEEeeecccCCCCCCCCCCCCCEEEEeeccCccccccceeecCCCceeeeecCCCC
Q 016961 160 RMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDG 239 (380)
Q Consensus 160 ~~~~~~L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~~~~~~divIvREnteG~Y~g~e~~~~~~g~~e~~~~~~~g 239 (380)
+++++.|+++|+|||++||++||||+|+|||+++++|++.++|+.||+|+||||||+|.|+++.+.++++.++.|.++.
T Consensus 82 ~~~~~~~~~~~~s~~l~LR~~ldlyan~RPv~~~~~~~~~~~~~~divi~Re~t~g~Y~g~d~~~~~e~t~~~~y~~e~- 160 (399)
T 1zor_A 82 RVKEYNLKKAWKSPNATIRAYLDGTVFRKPIMVKNVPPLVKRWKKPIIIGRHAYGDIYNAVEAKVEGPAEVELVVRNKE- 160 (399)
T ss_dssp HHHHHTCSSCCCCHHHHHHHHHTCEEEEEECCBTTBCCSBTTCCSCCEEEECCSSGGGGCEEEEECSSEEEEEEEESSS-
T ss_pred cCccccccccccCchHHHHHHhCCEEEEEEeecCCCCCcccCcCccceeeecccCCCcCCceeEecCCCcceeeEeccc-
Confidence 5666656668999999999999999999999878888777778899999999999999999999888888777776531
Q ss_pred CCcceeeecccCCcceeeecccCHHHHHHHHHHHHHHHhcCCCCEEEEeCCCcccccchhHHHHHHHHHHHhhhcccCCC
Q 016961 240 TGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEH 319 (380)
Q Consensus 240 ~~~~~~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk~~Vt~v~KaNVLk~tdglf~~i~~eVa~~eY~~~~~~p 319 (380)
..+..+++++++++.+.++||+++++||+|+||+||++|+++||+|||+||||.|||+|+++|+|||++ |+++|.++
T Consensus 161 --~~~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNvlk~sdglf~~~~~eva~~-~~~~yp~~ 237 (399)
T 1zor_A 161 --NKTLLVHKFEGNGVVMAMHNLEKSIRSFAQSCINYAISEKVDIWFATKDTISKVYHAYFKDIFQEEVDK-RKEELEKA 237 (399)
T ss_dssp --CEEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTCTTHHHHHHHHHHHHHHH-THHHHHHT
T ss_pred --cccceeeccCCceEEEEEEecHHHHHHHHHHHHHHHHHhCCeEEEEECcccHHHHHHHHHHHHHHHHHh-hcccCCCC
Confidence 123455566777888999999999999999999999999889999999999999999999999999973 22233222
Q ss_pred CeeEehhhHHHHHHHHHHCCCCcEEEeCCchhhHHHhhhhhccCCccccCCCCCCCCC
Q 016961 320 SIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPN 377 (380)
Q Consensus 320 ~I~~e~~lIDa~a~~LVk~P~~FViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~p~ 377 (380)
+|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+ ||+|++|+
T Consensus 238 ~I~~~~~~vD~~~mqlv~~P~~fVivt~NlfGDIlSD~aA~l~GslGl~-pSanig~~ 294 (399)
T 1zor_A 238 GVNYRYMLIDDAAAQILRSEGGMLWACMNYEGDIMSDMIASGFGSLGLM-TSVLVSPD 294 (399)
T ss_dssp TCCEEEEEHHHHHHHHHHSCCCSEEEECHHHHHHHHHHHHHHHCCGGGE-EEEEECTT
T ss_pred cEEEEEEEHHHHHHHhccCCCceEEEEccchHHHHHHHHHHhcCCcccc-ceeEecCC
Confidence 5999999999999999999999999999999999999999999999999 78999986
No 6
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A*
Probab=100.00 E-value=3.1e-80 Score=628.63 Aligned_cols=297 Identities=64% Similarity=1.056 Sum_probs=263.8
Q ss_pred cccccccccEEEEcCCccHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCc
Q 016961 79 IDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDE 158 (380)
Q Consensus 79 ~~~~~~~~~IvvlpGDgIGpEV~~~~~~~l~~~g~~i~~~~~d~G~~~~d~tG~~lp~etleaik~~da~lkGa~~tP~~ 158 (380)
.+||+|+++|++|||||||||||++++++++.++++|+|+++++|+++|++||+++|++++++|+++|++||||++||..
T Consensus 16 ~~k~~~~~~I~~l~GDgig~evl~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~et~~ai~~~da~lkGav~tP~~ 95 (427)
T 2qfy_A 16 FSKIKVKQPVVELDGDEMTRIIWDKIKKKLILPYLDVDLKYYDLSVESRDATSDKITQDAAEAIKKYGVGIKCATITPDE 95 (427)
T ss_dssp CCCEECSSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCH
T ss_pred cccccceeeEEEecCCCHHHHHHHHHHHHhccCCCceEEEEEecChHHHhccCCcCcHHHHHHHHHCCEEEECCcCCCCC
Confidence 36999999999999999999999999998888899999999999999999999999999999999999999999999987
Q ss_pred chhhhhcccccCCCCchhHhhhcCCeEEeeecccCCCCCCCCCCCCCEEEEeeccCccccccceeecCCCceeeeec-CC
Q 016961 159 TRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFD-PE 237 (380)
Q Consensus 159 ~~~~~~~L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~~~~~~divIvREnteG~Y~g~e~~~~~~g~~e~~~~-~~ 237 (380)
.+++|++|+++|+|||++||++||||+|+||++++++|++.++|+.||+|+||+++|+|.++|+++.++++ +..|. ++
T Consensus 96 ~~~~e~~l~~~~~s~~~~lR~~ldlyan~RP~~~~~~~~l~~g~~~pl~i~R~~~g~~y~~~D~vivREnt-eg~Y~~~e 174 (427)
T 2qfy_A 96 ARVKEFNLHKMWKSPNGTIRNILGGTVFREPIVIPRIPRLVPRWEKPIIIGRHAHGDQYKATDTLIPGPGS-LELVYKPS 174 (427)
T ss_dssp HHHHHTTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCEEEEEEEECSSGGGGCEEEEECSSEE-EEEEEEES
T ss_pred cccchhhhcccccchHHHHHHhcCCEEEecccccccchhhccCCCCCeeEeecccCCccCCeeEEEeccCc-cceeeecc
Confidence 77777778789999999999999999999999888899988888899999999999999999999988887 44443 22
Q ss_pred C--CCCcceeeecccCCcceeeecccCHHHHHHHHHHHHHHHhcCCCCEEEEeCCCcccccchhHHHHHHHHHHHhhhcc
Q 016961 238 D--GTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQK 315 (380)
Q Consensus 238 ~--g~~~~~~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk~~Vt~v~KaNVLk~tdglf~~i~~eVa~~eY~~~ 315 (380)
+ |.......++++++.++...+++|+++|+||+|+||+||++|+++||+|||+||||.|||+|+++|+|||+++|.++
T Consensus 175 ~teG~~~~~~~~~~~~~~~v~~~~~~T~~~ieRIar~AFe~A~~r~~kVt~v~KaNVlk~s~glfr~v~~eva~~eYpd~ 254 (427)
T 2qfy_A 175 DPTTAQPQTLKVYDYKGSGVAMAMYNTDESIEGFAHSSFKLAIDKKLNLFLSTKNTILKKYDGRFKDIFQEVYEAQYKSK 254 (427)
T ss_dssp CTTTSCCEEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHH
T ss_pred ccCCccccccccccCCCceEEEEEEEcHHHHHHHHHHHHHHHHHhCCceEEEECCccchhhhHHHHHHHHHHHHHhCCCc
Confidence 2 32222333344445566665789999999999999999999999999999999999899999999999994489444
Q ss_pred cCCCCeeEehhhHHHHHHHHHHCCCCcEEEeCCchhhHHHhhhhhccCCccccCCCCCCCCC
Q 016961 316 FEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPN 377 (380)
Q Consensus 316 ~~~p~I~~e~~lIDa~a~~LVk~P~~FViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~p~ 377 (380)
|++.+|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+ ||+|++|+
T Consensus 255 ~~~~~I~~e~~~VD~~amqlV~~P~~FVivt~NlfGDILSD~aA~l~GslGl~-pSanig~~ 315 (427)
T 2qfy_A 255 FEQLGIHYEHRLIDDMVAQMIKSKGGFIMALKNYDGDVQSDIVAQGFGSLGLM-TSILVTPD 315 (427)
T ss_dssp HHHHTCCEEEEEHHHHHHHHHHSCEEEEEEECHHHHHHHHHHHHHHHTCTTSE-EEEEECTT
T ss_pred ccCCeEEEEEEEHHHHHHHHHhCCCceEEEECccchHHHHHHHHHhcCccccc-ceeEeCCC
Confidence 43334999999999999999999999999999999999999999999999999 78999986
No 7
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A
Probab=100.00 E-value=1e-78 Score=599.99 Aligned_cols=247 Identities=15% Similarity=0.127 Sum_probs=227.0
Q ss_pred ccEEEEcCCccHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcchhhhhc
Q 016961 86 NPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFG 165 (380)
Q Consensus 86 ~~IvvlpGDgIGpEV~~~~~~~l~~~g~~i~~~~~d~G~~~~d~tG~~lp~etleaik~~da~lkGa~~tP~~~~~~~~~ 165 (380)
++|++||||||||||+++++++|.+.+++|+|+++++|+++|++||+++|++++++|+++|++||||+++|....
T Consensus 2 ~~I~vipGDGIGpEv~~~a~~vl~a~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~l~Gav~~P~~~~----- 76 (333)
T 1x0l_A 2 YRICLIEGDGIGHEVIPAARRVLEATGLPLEFVEAEAGWETFERRGTSVPEETVEKILSCHATLFGAATSPTRKV----- 76 (333)
T ss_dssp EEEEEEEESTTHHHHHHHHHHHHHTTTCCEEEEEECCSHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCCSSCC-----
T ss_pred cEEEEECCCCcCHHHHHHHHHHHHHcCCCeEEEEEecchHHHHhhCCcCcHHHHHHHHHCCEEEECCccCCCCCC-----
Confidence 589999999999999999999998889999999999999999999999999999999999999999999996321
Q ss_pred ccccCCCCchhHhhhcCCeEEeeecccCCCCCCCCCC-CCCEEEEeeccCccccccceeecCCCceeeeecCCCCCCcce
Q 016961 166 LKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW-KKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVE 244 (380)
Q Consensus 166 L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~~~~-~~divIvREnteG~Y~g~e~~~~~~g~~e~~~~~~~g~~~~~ 244 (380)
.+|+|+|++|||+||||+|+||| +.+| +.+++ +.|||||||||||+|+|.++. .++
T Consensus 77 --~~~~s~~l~lR~~ldlyan~RP~--~~~p-~~s~~~~vD~vivREnteg~Y~g~~~~--~~~---------------- 133 (333)
T 1x0l_A 77 --PGFFGAIRYLRRRLDLYANVRPA--KSRP-VPGSRPGVDLVIVRENTEGLYVEQERR--YLD---------------- 133 (333)
T ss_dssp --TTCCCHHHHHHHHTTCCEEEEEE--ECCS-STTCCSSCEEEEEEECGGGTCCCCEEE--ETT----------------
T ss_pred --cCccChhHHHHHHcCCEEEEEEE--eecc-CCCCCCCCCEEEEecCccceecccccc--CCC----------------
Confidence 46899999999999999999998 5677 66555 479999999999999998653 111
Q ss_pred eeecccCCcceeeecccCHHHHHHHHHHHHHHHhcC-CCCEEEEeCCCcccccchhHHHHHHHHHHHhhhcccCCCCeeE
Q 016961 245 LDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSK-KWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWY 323 (380)
Q Consensus 245 ~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~r-k~~Vt~v~KaNVLk~tdglf~~i~~eVa~~eY~~~~~~p~I~~ 323 (380)
.+.++++||++++|||+|+||+||++| +++||+|||+||||.+||+|+++|+|||+ +| |+|++
T Consensus 134 ---------~a~~~~~~T~~~~eRiar~AF~~A~~r~rkkvt~v~KaNvlk~t~glf~~~~~eva~-ey------p~I~~ 197 (333)
T 1x0l_A 134 ---------VAIADAVISKKASERIGRAALRIAEGRPRKTLHIAHKANVLPLTQGLFLDTVKEVAK-DF------PLVNV 197 (333)
T ss_dssp ---------EEEEEEEEEHHHHHHHHHHHHHHHHTSTTCEEEEEECTTTCTTHHHHHHHHHHHHHT-TC------TTSEE
T ss_pred ---------eEEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEecCccchhhhHHHHHHHHHHHH-HC------CCceE
Confidence 244667799999999999999999999 57899999999999999999999999998 89 99999
Q ss_pred ehhhHHHHHHHHHHCCCCc-EEEeCCchhhHHHhhhhhccCCccccCCCCCCCCC
Q 016961 324 EHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPN 377 (380)
Q Consensus 324 e~~lIDa~a~~LVk~P~~F-ViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~p~ 377 (380)
+|+|||+||||||++|++| ||||+|||||||||++|+++|||||+ ||+|++|+
T Consensus 198 ~~~~vD~~~m~lv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~-psanig~~ 251 (333)
T 1x0l_A 198 QDIIVDNCAMQLVMRPERFDVIVTTNLLGDILSDLAAGLVGGLGLA-PSGNIGDT 251 (333)
T ss_dssp EEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCSTTC-EEEEECSS
T ss_pred EEEEHHHHHHHHhhCcccceEEEEcCccchhHhHHHHhhcCCcccc-eeeEECCC
Confidence 9999999999999999999 99999999999999999999999999 78999886
No 8
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A
Probab=100.00 E-value=8.8e-79 Score=601.49 Aligned_cols=254 Identities=16% Similarity=0.119 Sum_probs=228.1
Q ss_pred ccEEEEcCCccHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcchhhhhc
Q 016961 86 NPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFG 165 (380)
Q Consensus 86 ~~IvvlpGDgIGpEV~~~~~~~l~~~g~~i~~~~~d~G~~~~d~tG~~lp~etleaik~~da~lkGa~~tP~~~~~~~~~ 165 (380)
++|++||||||||||+++++++|.+.+.+|+|+++++|+++|++||+++|++++++|+++|++||||++||+.. .+
T Consensus 2 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~G~~~~~~~g~~lp~~t~~~~~~~da~l~Gav~~P~~~--~~-- 77 (337)
T 1w0d_A 2 SKLAIIAGDGIGPEVTAEAVKVLDAVVPGVQKTSYDLGARRFHATGEVLPDSVVAELRNHDAILLGAIGDPSVP--SG-- 77 (337)
T ss_dssp CEEEEEEESTTHHHHHHHHHHHHHHHSTTCEEEECCCSHHHHHHHSCSSCHHHHHHHTTSSEEEEEECCCTTSC--TT--
T ss_pred cEEEEeCCCCcCHHHHHHHHHHHHHhcCCcEEEEEecchHHHhhhCCcCCHHHHHHHHHCCEEEECCccCCCCC--Cc--
Confidence 57999999999999999999988765446999999999999999999999999999999999999999999521 11
Q ss_pred ccccCCCCchhHhhhcCCeEEeeecccCCCCCCCCCCC----CCEEEEeeccCccccccceeecCCCceeeeecCCCCCC
Q 016961 166 LKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWK----KPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTG 241 (380)
Q Consensus 166 L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~~~~~----~divIvREnteG~Y~g~e~~~~~~g~~e~~~~~~~g~~ 241 (380)
.+|+|+|++|||+||||+|+||| +.+|++.++++ .|||||||||||+|+|.++... +|.
T Consensus 78 --~~~~s~~l~lR~~ldlyan~RP~--~~~pg~~s~l~~~~~~DivivREnteg~Y~g~e~~~~-~g~------------ 140 (337)
T 1w0d_A 78 --VLERGLLLRLRFELDHHINLRPA--RLYPGVASPLSGNPGIDFVVVREGTEGPYTGNGGAIR-VGT------------ 140 (337)
T ss_dssp --HHHHHTHHHHHHHTTCCEEEEEE--ECCTTCCCSBTTCCCCEEEEEEECSCSGGGCCEEEES-TTS------------
T ss_pred --ccccchHHHHHHHcCCEEEEEEe--ecCCCCCCcccCCCCCcEEEEecCCCCeecCCcceec-CCC------------
Confidence 13678999999999999999998 67888877664 7999999999999999987541 111
Q ss_pred cceeeecccCCcceeeecccCHHHHHHHHHHHHHHHhcCCCCEEEEeCCCcccccchhHHHHHHHHHHHhhhcccCCCCe
Q 016961 242 PVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSI 321 (380)
Q Consensus 242 ~~~~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk~~Vt~v~KaNVLk~tdglf~~i~~eVa~~eY~~~~~~p~I 321 (380)
+++.+.++++||++++|||+|+||+||++|++|||+|||+||||.+||+|+++|+|||+ +| |+|
T Consensus 141 ---------~~~~a~~~~~~T~~~~eRiar~AFe~A~~rrkkVt~v~KaNvlk~s~glf~~~~~eva~-ey------p~i 204 (337)
T 1w0d_A 141 ---------PNEVATEVSVNTAFGVRRVVADAFERARRRRKHLTLVHKTNVLTFAGGLWLRTVDEVGE-CY------PDV 204 (337)
T ss_dssp ---------TTCEEEEEEEEEHHHHHHHHHHHHHHHHHTTSEEEEEECTTTSHHHHHHHHHHHHHHHT-TC------TTS
T ss_pred ---------CCCeEEEEEEEcHHHHHHHHHHHHHHHHHcCCeEEEEECCccchhhhHHHHHHHHHHHH-HC------Cce
Confidence 01235577889999999999999999999988999999999999999999999999997 89 999
Q ss_pred eEehhhHHHHHHHHHHCCCCc-EEEeCCchhhHHHhhhhhccCCccccCCCCCCCCC
Q 016961 322 WYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPN 377 (380)
Q Consensus 322 ~~e~~lIDa~a~~LVk~P~~F-ViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~p~ 377 (380)
+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+ ||+|++|+
T Consensus 205 ~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~-psanig~~ 260 (337)
T 1w0d_A 205 EVAYQHVDAATIHMITDPGRFDVIVTDNLFGDIITDLAAAVCGGIGLA-ASGNIDAT 260 (337)
T ss_dssp EEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCGGGC-EEEEECTT
T ss_pred EEEEEEHHHHHHHHhhCcccccEEEECcchhHHHHHHHhhhcCCcccC-ceeEeCCC
Confidence 999999999999999999999 99999999999999999999999999 78999984
No 9
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Probab=100.00 E-value=1.1e-77 Score=597.39 Aligned_cols=252 Identities=14% Similarity=0.088 Sum_probs=225.1
Q ss_pred ccEEEEcCCccHHHHHHHHHHHHhcC----CCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcchh
Q 016961 86 NPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRM 161 (380)
Q Consensus 86 ~~IvvlpGDgIGpEV~~~~~~~l~~~----g~~i~~~~~d~G~~~~d~tG~~lp~etleaik~~da~lkGa~~tP~~~~~ 161 (380)
++|++||||||||||+++++++|.+. +++|+|+++++|+++|++||+++|++++++|+++|++||||+++|...++
T Consensus 4 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~l~Gavg~P~~~~~ 83 (359)
T 2y3z_A 4 MKVAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVEEAEAVLLGSVGGPKWDGL 83 (359)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHHHHHHHHHTCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHHSSEEEECCCCCGGGTTS
T ss_pred cEEEEECCCCcCHHHHHHHHHHHHHHHHhcCCCeEEEEEeccHHHHHhhCCcCCHHHHHHHHHCCEEEEccccCCccccC
Confidence 68999999999999999999988654 79999999999999999999999999999999999999999999975433
Q ss_pred hhhcccccCCCCchhHhhhcCCeEEeeecccCCCCCCC--CCC------CCCEEEEeeccCccccccceeecCCCceeee
Q 016961 162 KEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIV--PGW------KKPICIGRHAFGDQYRATDTVIKGPGKLKMV 233 (380)
Q Consensus 162 ~~~~L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~--~~~------~~divIvREnteG~Y~g~e~~~~~~g~~e~~ 233 (380)
++ ++ ++|++ |++|||+||||+|+||| +.+|++. +++ +.|||||||||||+|+|.++.. ++
T Consensus 84 ~~-~~-~~~~~-~l~LR~~ldlyanvRP~--~~~pgl~~~splk~~~~~~iD~vivREnteg~Y~g~e~~~-~~------ 151 (359)
T 2y3z_A 84 PR-KI-RPETG-LLSLRKSQDLFANLRPA--KVFPGLERLSPLKEEIARGVDVLIVRELTGGIYFGEPRGM-SE------ 151 (359)
T ss_dssp CG-GG-CHHHH-HHHHHHHTTEEEEEEEE--ECCTTCGGGSSSCHHHHTTCEEEEEEECSCSTTTCSSCEE-CS------
T ss_pred Cc-cc-ccchh-HHHHHHHhCCEEEEEEe--eccCCCCCCCCcccccCCCceEEEEecCccceEecCCCcC-CC------
Confidence 32 12 24666 99999999999999998 6788873 333 4799999999999999986532 00
Q ss_pred ecCCCCCCcceeeecccCCcceeeecccCHHHHHHHHHHHHHHHhcCCCCEEEEeCCCcccccchhHHHHHHHHHHHhhh
Q 016961 234 FDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWR 313 (380)
Q Consensus 234 ~~~~~g~~~~~~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk~~Vt~v~KaNVLk~tdglf~~i~~eVa~~eY~ 313 (380)
+.+.++++||++++|||+|+||+||++|+++||+|||+|||| ++|+|+++|+|||+ +|
T Consensus 152 -------------------~~a~~~~~~T~~~~eRIar~AFe~A~~rrkkVt~v~KaNvlk-~~~lf~~~~~eva~-ey- 209 (359)
T 2y3z_A 152 -------------------AEAWNTERYSKPEVERVARVAFEAARKRRKHVVSVDKANVLE-VGEFWRKTVEEVGR-GY- 209 (359)
T ss_dssp -------------------SCEECCCCCCHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHHHT-TC-
T ss_pred -------------------ceEEEEEEEcHHHHHHHHHHHHHHHHHcCCeEEEEECCcccc-ccHHHHHHHHHHHH-HC-
Confidence 124466789999999999999999999988999999999999 89999999999997 89
Q ss_pred cccCCCCeeEehhhHHHHHHHHHHCCCCc-EEEeCCchhhHHHhhhhhccCCccccCCCCCCCCC
Q 016961 314 QKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPN 377 (380)
Q Consensus 314 ~~~~~p~I~~e~~lIDa~a~~LVk~P~~F-ViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~p~ 377 (380)
|+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+ ||+|++|+
T Consensus 210 -----pdI~~~~~~VD~~~mqlv~~P~~FDVivt~NlfGDILSD~aa~l~GslGl~-pSanig~~ 268 (359)
T 2y3z_A 210 -----PDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLL-PSASLGRG 268 (359)
T ss_dssp -----TTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHTTTSCGGGC-EEEEEESS
T ss_pred -----CcEEEEeeEHHHHHHHHhhCcccccEEEEcCcchHHHHHHHHHhcCccccc-ceeEeCCC
Confidence 999999999999999999999999 99999999999999999999999999 78999986
No 10
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*
Probab=100.00 E-value=9.5e-78 Score=599.14 Aligned_cols=257 Identities=13% Similarity=0.076 Sum_probs=225.8
Q ss_pred ccccEEEEcCCccHHHHHHHHHHHHhc----CCCCeEEEEEecch-HHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCc
Q 016961 84 VQNPIVEMDGDEMTRIIWQMIKDKLIF----PYLDLDIKYYDLGI-LNRDATDDKVTVESAEATLKYNVAIKCATITPDE 158 (380)
Q Consensus 84 ~~~~IvvlpGDgIGpEV~~~~~~~l~~----~g~~i~~~~~d~G~-~~~d~tG~~lp~etleaik~~da~lkGa~~tP~~ 158 (380)
+.++|++||||||||||+++++++|.+ .+++|+|+++++|+ ++|++||+++|++++++|+++|++||||+++|..
T Consensus 4 ~~~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~~g~~lp~~tl~~~~~~da~L~Gavg~P~~ 83 (364)
T 3flk_A 4 HSFRIAAIPGDGIGLEVLPEGIRVLEAAALKHGLALEFDTFEWASCDYYLQHGKMMPDDWAEQLKQYDAIYFGAVGWPDK 83 (364)
T ss_dssp -CEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCEEEEECCCSSHHHHHHHSSSSCTTHHHHHTTSSEEEEEECCBTTT
T ss_pred CceEEEEECCCcccHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCcHHHHhccCCcCCHHHHHHHHHCCEEEECCccCccc
Confidence 457899999999999999999998854 28999999999999 9999999999999999999999999999999962
Q ss_pred chhhhhcccccCCCCchhHhhhcCCeEEeeecccCCCCCCCCCC------CCCEEEEeeccCccccccceeecCCCceee
Q 016961 159 TRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW------KKPICIGRHAFGDQYRATDTVIKGPGKLKM 232 (380)
Q Consensus 159 ~~~~~~~L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~~~~------~~divIvREnteG~Y~g~e~~~~~~g~~e~ 232 (380)
. ... ..++|+|++||++||||+|+||| +.+|++.+++ +.|||||||||||+|+|.++... .+
T Consensus 84 ~-~~~----~~~~s~~l~LR~~ldlyanvRP~--~~~pg~~splk~~~~~~vD~vivREnteG~Y~g~~~~~~-~~---- 151 (364)
T 3flk_A 84 V-PDH----ISLWGSLLKFRREFDQYVNIRPV--RLFPGVPCALANRKVGDIDFVVVRENTEGEYSSLGGIMF-EN---- 151 (364)
T ss_dssp B-CHH----HHHHTTHHHHHHHTTCCEEEEEE--ECCTTCCCSBTTCCTTSSEEEEEEECSSBTCCCCEEEES-TT----
T ss_pred C-CCC----cCcccchHHHHHHhCCeEEEEEE--eccCCcccccccccCCCCCEEEEeeCCCceecCcCceec-cC----
Confidence 1 111 11368999999999999999997 6677776554 46999999999999999876431 11
Q ss_pred eecCCCCCCcceeeecccCCcceeeecccCHHHHHHHHHHHHHHHhcCCC-CEEEEeCCCcccccchhHHHHHHHHHHHh
Q 016961 233 VFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKW-PLYLSTKNTILKKYDGRFKDIFQQVYEER 311 (380)
Q Consensus 233 ~~~~~~g~~~~~~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk~-~Vt~v~KaNVLk~tdglf~~i~~eVa~~e 311 (380)
. .+..+.++++||++++|||+|+||+||++|++ +||+|||+||||.++|+|+++|+|||+ +
T Consensus 152 ----~-------------~~~~a~~~~~~T~~~~eRIar~AFe~A~~r~~kkVt~v~KaNvlk~s~glf~~~~~eva~-e 213 (364)
T 3flk_A 152 ----T-------------ENEIVIQESIFTRRGVDRILKYAFDLAEKRERKHVTSATKSNGMAISMPYWDKRTEAMAA-H 213 (364)
T ss_dssp ----S-------------TTCEEEEEEEEEHHHHHHHHHHHHHHHHHSSSCEEEEEECTTTSTTHHHHHHHHHHHHHT-T
T ss_pred ----C-------------CCCEEEEEEEECHHHHHHHHHHHHHHHHhcCCCeEEEEECcchhhhHHHHHHHHHHHHHH-H
Confidence 0 01124567889999999999999999999976 699999999999999999999999987 8
Q ss_pred hhcccCCCCeeEehhhHHHHHHHHHHCCCCc-EEEeCCchhhHHHhhhhhccCCccccCCCCCCCCC
Q 016961 312 WRQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPN 377 (380)
Q Consensus 312 Y~~~~~~p~I~~e~~lIDa~a~~LVk~P~~F-ViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~p~ 377 (380)
| |+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+ ||+|++|+
T Consensus 214 y------pdv~~~~~~vD~~am~lv~~P~~FDVivt~NlfGDILSD~aa~l~GslGl~-pSanig~~ 273 (364)
T 3flk_A 214 Y------PHVSWDKQHIDILCARFVLQPERFDVVVASNLFGDILSDLGPACAGTIGIA-PSANLNPE 273 (364)
T ss_dssp C------TTCEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCSTTC-EEEEECTT
T ss_pred C------CCceEEeeEHHHHHHHHHhCcccCcEEEecccchHHHHHHHHHhcCCcccc-cccccCCC
Confidence 9 999999999999999999999999 99999999999999999999999999 78999986
No 11
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} SCOP: c.77.1.1 PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4aj3_A* 4aja_A* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A ...
Probab=100.00 E-value=2.5e-77 Score=606.66 Aligned_cols=277 Identities=19% Similarity=0.135 Sum_probs=230.7
Q ss_pred ccccEEEEcCCccHHHHHHHHHHHHhcC-------CCCeEEEEEecchHHHhhcCC--CCcHHHHHHHHhcCeeeecCCC
Q 016961 84 VQNPIVEMDGDEMTRIIWQMIKDKLIFP-------YLDLDIKYYDLGILNRDATDD--KVTVESAEATLKYNVAIKCATI 154 (380)
Q Consensus 84 ~~~~IvvlpGDgIGpEV~~~~~~~l~~~-------g~~i~~~~~d~G~~~~d~tG~--~lp~etleaik~~da~lkGa~~ 154 (380)
..++|++|||||||||||++++++|.+. +++|+|+++++|+++|++||+ +||+|++++|+++|++||||++
T Consensus 35 ~~~~I~vipGDGIGpEV~~~a~~Vl~aa~~~~~~~~~~i~~~~~~~G~~a~~~~G~~~~lp~etl~~~k~~da~l~G~~~ 114 (427)
T 3dms_A 35 DQPIIPYIEGDGTGFDITPVMIKVVDAAVEKAYGGKKKIHWMEIYAGEKATKVYGPDVWLPEETLQVLKEYVVSIKGPLT 114 (427)
T ss_dssp SSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEECCTHHHHHHHCTTCSSCHHHHHHHHHTCEEEECCCC
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeCCHHHHHhcCCCCCCCHHHHHHHHhcCEEEECCCC
Confidence 4468999999999999999999888542 389999999999999999999 9999999999999999999999
Q ss_pred CCCcchhhhhcccccCCCCchhHhhhcCCeEEeeecccCCCCCCCCCC----CCCEEEEeeccCccccccceeecCCCce
Q 016961 155 TPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW----KKPICIGRHAFGDQYRATDTVIKGPGKL 230 (380)
Q Consensus 155 tP~~~~~~~~~L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~~~~----~~divIvREnteG~Y~g~e~~~~~~g~~ 230 (380)
||.+ .+|+|+|++|||+||||||+||| +.+|++.+++ +.|||||||||||+|+|.++....+...
T Consensus 115 tP~~---------~~~~s~~l~LRk~LdLyaNlRPv--~~~pg~~splk~~~~vDivIvREnTeG~Y~G~e~~~~~~~~~ 183 (427)
T 3dms_A 115 TPVG---------GGIRSLNVALRQELDLYVCLRPI--QYFKGVPSPVREPEKTNMVIFRENSEDIYAGIEWAAESEQAK 183 (427)
T ss_dssp CCC-------------CCHHHHHHHHTTCCEEEEEE--CCCTTCCCSSSCGGGCCEEEEEECSSGGGGCCEECTTCHHHH
T ss_pred CCCC---------cccCChhHHHHHHhCCeEEEEEe--ecCCCCCCCCCCCCCceEEEEEECCCCEecCcccccCCcccc
Confidence 9964 45789999999999999999997 6778776654 5799999999999999998753111000
Q ss_pred ee-eec-CCCCCCcceeeecccCCcceeeecccCHHHHHHHHHHHHHHHhcCC-CCEEEEeCCCcccccchhHHHHHHHH
Q 016961 231 KM-VFD-PEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQV 307 (380)
Q Consensus 231 e~-~~~-~~~g~~~~~~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk-~~Vt~v~KaNVLk~tdglf~~i~~eV 307 (380)
++ .|. .+.| ++...++++.+.+.++||++++|||+|+||+||++|+ ++||+|||+||||.+||+|+++|+||
T Consensus 184 ~~~~~~~~~~g-----~~~~~~~~~~a~~~~~~Tr~~~eRIar~AFe~A~~r~rkkVT~V~KaNVlk~tdglfr~~~~ev 258 (427)
T 3dms_A 184 KVIKFLQEEMG-----VKKIRFPQTSGIGIKPVSKEGTERLVRKAIQYAIDNDRKSVTLVHKGNIMKFTEGAFRDAGYAL 258 (427)
T ss_dssp HHHHHHHHTSC-----CCCCSCGGGCCEECCCCCHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTSTTTHHHHHHHHHHH
T ss_pred ccccccccccc-----ccccccCCcceEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEECCccchhhhHHHHHHHHHH
Confidence 00 000 0011 1112234445667888999999999999999999985 68999999999999999999999999
Q ss_pred HHHhhhc-------------ccCCCCeeEehhhHHHHHHHHHHCCCCc-EEEeCCchhhHHHhhhhhccCCccccCCCCC
Q 016961 308 YEERWRQ-------------KFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGTVSAHSSAFEVS 373 (380)
Q Consensus 308 a~~eY~~-------------~~~~p~I~~e~~lIDa~a~~LVk~P~~F-ViVt~NLfGDILSDlaA~l~GsLGlap~~~~ 373 (380)
|++||.+ .+++|+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+ ||||
T Consensus 259 a~~eypdv~~~~~~~~~~~~~~~~~~V~~~~~~VD~~amqlv~~P~~FDViVt~NlfGDILSD~aA~l~GslGl~-pSan 337 (427)
T 3dms_A 259 AQKEFGAELIDGGPWMKFKNPKTGNEIVVKDSIADAFLQQILLRPAEYDVIATLNLNGDYISDALAAQVGGIGIA-PGAN 337 (427)
T ss_dssp HHHHHCCEESTTSSCEEEECTTTCCEEEEEEEEHHHHHHHHHHCGGGCCEEEECHHHHHHHHHHHHHHTTCTTTC-EEEE
T ss_pred HHHhCCccccccccccccccccccCceEEEEeeHHHHHHHHhhCcccceEEEEcccccHHHHHHHHHhcCCcccc-ceee
Confidence 9867843 1344579999999999999999999999 99999999999999999999999999 6799
Q ss_pred CCCC
Q 016961 374 RAPN 377 (380)
Q Consensus 374 ~~p~ 377 (380)
++|+
T Consensus 338 ig~~ 341 (427)
T 3dms_A 338 LSDS 341 (427)
T ss_dssp ECSS
T ss_pred eCCC
Confidence 9876
No 12
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1
Probab=100.00 E-value=8.8e-78 Score=609.32 Aligned_cols=271 Identities=19% Similarity=0.184 Sum_probs=232.1
Q ss_pred ccEEEEcCCccHHHHHHHHHHHHhcC-------CCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCc
Q 016961 86 NPIVEMDGDEMTRIIWQMIKDKLIFP-------YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDE 158 (380)
Q Consensus 86 ~~IvvlpGDgIGpEV~~~~~~~l~~~-------g~~i~~~~~d~G~~~~d~tG~~lp~etleaik~~da~lkGa~~tP~~ 158 (380)
.+|++|||||||||||++++++|.+. +++|+|+++++|+++|++||+++|+|++++|+++|++||||++||.+
T Consensus 20 ~~I~vipGDGIGpEI~~~a~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~lkGav~tP~~ 99 (423)
T 1hqs_A 20 PIIPFIEGDGTGPDIWNAASKVLEAAVEKAYKGEKKITWKEVYAGEKAYNKTGEWLPAETLDVIREYFIAIKGPLTTPVG 99 (423)
T ss_dssp BEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCCTHHHHHHHSCSSCHHHHHHHHHHCEEEECCCCCCSS
T ss_pred CEEEEECCCCcCHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCHHHHHhhCCcCcHHHHHHHHHCCEEEECCccCCCC
Confidence 46999999999999999999877543 38999999999999999999999999999999999999999999953
Q ss_pred chhhhhcccccCCCCchhHhhhcCCeEEeeecccCCCCCCCCCC----CCCEEEEeeccCccccccceeecCCCceeeee
Q 016961 159 TRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW----KKPICIGRHAFGDQYRATDTVIKGPGKLKMVF 234 (380)
Q Consensus 159 ~~~~~~~L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~~~~----~~divIvREnteG~Y~g~e~~~~~~g~~e~~~ 234 (380)
++|+|+|++||++||||+|+||| +.+|++.+++ +.|||||||||||+|+|.++. .+.+..+.++
T Consensus 100 ---------~~~~s~nl~LRk~LdlyanvRPv--~~~pg~~splk~~~~vDivIvREnteg~Y~G~e~~-~g~~~~~~v~ 167 (423)
T 1hqs_A 100 ---------GGIRSLNVALRQELDLFVCLRPV--RYFTGVPSPVKRPEDTDMVIFRENTEDIYAGIEYA-KGSEEVQKLI 167 (423)
T ss_dssp ---------SSSCCHHHHHHHHTTCCEEEEEE--ECCTTCCCSBSCGGGCEEEEEEECSCGGGGCCEEC-TTCHHHHHHH
T ss_pred ---------cCcCChhHHHHHHcCCEEEEEEE--eccCCCCCCCCCCCCCcEEEEecCCCCeecccccc-cCCcccccee
Confidence 56899999999999999999998 5678876665 479999999999999999874 2221111000
Q ss_pred cCCCCCCcceeeecccCCcceeeecccCHHHHHHHHHHHHHHHhcC-CCCEEEEeCCCcccccchhHHHHHHHHHHHhhh
Q 016961 235 DPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSK-KWPLYLSTKNTILKKYDGRFKDIFQQVYEERWR 313 (380)
Q Consensus 235 ~~~~g~~~~~~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~r-k~~Vt~v~KaNVLk~tdglf~~i~~eVa~~eY~ 313 (380)
... + ....++.+.++++.+...++||+++++||+|+||+||++| +++||+|||+||||.|+|+|+++|+|||++||
T Consensus 168 ~~~-~-~~~~~~~~~~~~~~a~~~~~~T~~~~eRiar~AFe~A~~r~rkkVt~v~KaNVlk~t~Glf~~~~~eva~~ey- 244 (423)
T 1hqs_A 168 SFL-Q-NELNVNKIRFPETSGIGIKPVSEEGTSRLVRAAIDYAIEHGRKSVTLVHKGNIMKFTEGAFKNWGYELAEKEY- 244 (423)
T ss_dssp HHH-H-HHSCCCCCSCGGGEEEEEEEEEHHHHHHHHHHHHHHHHHHTCSEEEEEECTTTSTTTHHHHHHHHHHHHHHHH-
T ss_pred ccc-c-ccccccccccCCceEEEEEEEcHHHHHHHHHHHHHHHHHcCCCcEEEEECCccchhhhHHHHHHHHHHHHHhC-
Confidence 000 0 0012233344555667889999999999999999999998 57899999999999999999999999997689
Q ss_pred cccCCCC--------------------------------eeEehhhHHHHHHHHHHCCCCc-EEEeCCchhhHHHhhhhh
Q 016961 314 QKFEEHS--------------------------------IWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQ 360 (380)
Q Consensus 314 ~~~~~p~--------------------------------I~~e~~lIDa~a~~LVk~P~~F-ViVt~NLfGDILSDlaA~ 360 (380)
|+ |+++|+|||+||||||++|++| ||||+|||||||||++|+
T Consensus 245 -----pd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~aA~ 319 (423)
T 1hqs_A 245 -----GDKVFTWAQYDRIAEEQGKDAANKAQSEAEAAGKIIIKDSIADIFLQQILTRPNEFDVVATMNLNGDYISDALAA 319 (423)
T ss_dssp -----GGGEEEHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHH
T ss_pred -----CCcccchhhhccccccccccccccccccccccCeEEEEEeeHHHHHHHHhhCCCCccEEEECCcchHHHHHHHHh
Confidence 66 9999999999999999999999 999999999999999999
Q ss_pred ccCCccccCCCCCCCCC
Q 016961 361 GTVSAHSSAFEVSRAPN 377 (380)
Q Consensus 361 l~GsLGlap~~~~~~p~ 377 (380)
++|||||+ ||+|++|+
T Consensus 320 l~GslGl~-pSanigp~ 335 (423)
T 1hqs_A 320 QVGGIGIA-PGANINYE 335 (423)
T ss_dssp HTTCTTTC-EEEEECTT
T ss_pred hcCCcccC-ccceecCC
Confidence 99999999 78999973
No 13
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A
Probab=100.00 E-value=1.4e-77 Score=600.76 Aligned_cols=258 Identities=16% Similarity=0.135 Sum_probs=220.9
Q ss_pred cccccEEEEcCCccHHHHHHHHHHHHhcC----CCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCc
Q 016961 83 KVQNPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDE 158 (380)
Q Consensus 83 ~~~~~IvvlpGDgIGpEV~~~~~~~l~~~----g~~i~~~~~d~G~~~~d~tG~~lp~etleaik~~da~lkGa~~tP~~ 158 (380)
+|+++|++||||||||||+++++++|.+. +++|+|+++++|+++++++|+++|++++++|+++|++||||+++|..
T Consensus 21 ~M~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~g~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~daiL~Gavg~P~~ 100 (390)
T 3u1h_A 21 AMKKKIAVLPGDGIGPEVMEAAIEVLKAVAERFGHEFEFEYGLIGGAAIDEAGTPLPEETLDVCRGSDAILLGAVGGPKW 100 (390)
T ss_dssp ---CEEEEEEESTTHHHHHHHHHHHHHHHHHHHSCCCEEEECCCTHHHHHSSSSSSCHHHHHHHHTSSEEEEEECCCSTT
T ss_pred CccceEEEECCCccCHHHHHHHHHHHHHHHHhcCCCeEEEEEEcCHHHHHhhCCcCCHHHHHHHHHCCEEEECCcCCCCc
Confidence 57889999999999999999999988654 89999999999999999999999999999999999999999999964
Q ss_pred chhhhhcccccCCCCchhHhhhcCCeEEeeecccCCCCCCC--CCC------CCCEEEEeeccCccccccceeecCCCce
Q 016961 159 TRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIV--PGW------KKPICIGRHAFGDQYRATDTVIKGPGKL 230 (380)
Q Consensus 159 ~~~~~~~L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~--~~~------~~divIvREnteG~Y~g~e~~~~~~g~~ 230 (380)
+.++. + ..+.++|++|||+||||||+||| +.+|++. +++ +.|||||||||||+|+|.++....+|
T Consensus 101 ~~~~~-~--~~~~~~ll~LRk~ldLyANvRP~--k~~pg~~~~splk~~~~~~vD~vIVREnTeG~Y~g~~~~~~~~g-- 173 (390)
T 3u1h_A 101 DQNPS-E--LRPEKGLLGIRKGLDLFANLRPV--KVYDSLADASPLKKEVIEGVDLVIVRELTGGLYFGEPSERYEEG-- 173 (390)
T ss_dssp TSSCC-S--SSSSCCHHHHHHHTTEEEEEEEE--ECCGGGTTSSSBCHHHHSSCEEEEEEECSSBSCC-------CTT--
T ss_pred CCCCc-c--cCccchHHHHHHHhCCeEEEEEe--eccCCccccCCcccccccCCcEEEEeeCCCCeecCccccccCCC--
Confidence 22111 1 12347899999999999999997 6677765 433 57999999999999999876431111
Q ss_pred eeeecCCCCCCcceeeecccCCcceeeecccCHHHHHHHHHHHHHHHhcCCCCEEEEeCCCcccccchhHHHHHHHHHHH
Q 016961 231 KMVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEE 310 (380)
Q Consensus 231 e~~~~~~~g~~~~~~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk~~Vt~v~KaNVLk~tdglf~~i~~eVa~~ 310 (380)
++.+.++++|||+++|||+|+||+||++|+++||+|||+||| .+||+|+++|+|||+
T Consensus 174 ---------------------~~~a~~~~~~Tr~~~eRIar~AFe~A~~rrkkVT~v~KaNVl-~t~glfr~~~~eva~- 230 (390)
T 3u1h_A 174 ---------------------EEAAVDTLLYTREEIERIIRKAFELALTRKKKVTSVDKANVL-ESSRLWREVAEEVAK- 230 (390)
T ss_dssp ---------------------CSEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTC-HHHHHHHHHHHHHHT-
T ss_pred ---------------------CceEEEEEEecHHHHhHHHHHHHHHHHHcCCceEEEECCccc-ccchHHHHHHHHHHh-
Confidence 012456778999999999999999999999999999999999 599999999999998
Q ss_pred hhhcccCCCCeeEehhhHHHHHHHHHHCCCCc-EEEeCCchhhHHHhhhhhccCCccccCCCCCCCCC
Q 016961 311 RWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPN 377 (380)
Q Consensus 311 eY~~~~~~p~I~~e~~lIDa~a~~LVk~P~~F-ViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~p~ 377 (380)
+| |+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+ ||+|++++
T Consensus 231 eY------PdV~~~~~~VD~~amqLV~~P~~FDViVt~NlfGDILSD~aA~l~GslGl~-pSanig~~ 291 (390)
T 3u1h_A 231 EY------PDVELEHMLVDNAAMQLIRNPRQFDVIVTENMFGDILSDEASMITGSLGML-PSASLSTD 291 (390)
T ss_dssp TC------TTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHSCTTTC-EEEEEETT
T ss_pred HC------CCCeEEeeeHHHHHHHHHhCcccCcEEEecccchHHHHHHHHHhcCchhhc-ceeeecCC
Confidence 89 999999999999999999999999 99999999999999999999999999 67899875
No 14
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A
Probab=100.00 E-value=7.5e-77 Score=592.50 Aligned_cols=253 Identities=16% Similarity=0.130 Sum_probs=225.8
Q ss_pred cccEEEEcCCccHHHHHHHHHHHHhcC----CCCeEEEEEecchHHHhhcCCCCcHHHHHHHHh-cCeeeecCCCCCCcc
Q 016961 85 QNPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLK-YNVAIKCATITPDET 159 (380)
Q Consensus 85 ~~~IvvlpGDgIGpEV~~~~~~~l~~~----g~~i~~~~~d~G~~~~d~tG~~lp~etleaik~-~da~lkGa~~tP~~~ 159 (380)
+++|++||||||||||+++++++|.+. +++|+|+++++|+++|++||+++|++++++|++ +|++||||+++|...
T Consensus 10 ~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~~da~L~Gavg~P~~~ 89 (366)
T 3ty4_A 10 RIVLGLIPADGIGKEVVPAARRLMENLPAKHKLKFDFIDLDAGWGTFERTGKALPERTVERLKTECNAALFGAVQSPTHK 89 (366)
T ss_dssp EEEEEEEEESTTHHHHHHHHHHHHHTCCGGGCCEEEEEECCCSHHHHHHHSCSSCHHHHHHHHHHCSEEEEEECCCCSSC
T ss_pred ceEEEEECCCccCHHHHHHHHHHHHHHHHhcCCceEEEEecchHHHHHhhCCCCCHHHHHHHHHhCCEEEECCccCCCCC
Confidence 478999999999999999999988653 789999999999999999999999999999999 699999999999643
Q ss_pred hhhhhcccccCCCCchhHhhhcCCeEEeeecccCCCCCCCCCCCCCEEEEeeccCccccccceeecCCCceeeeecCCCC
Q 016961 160 RMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDG 239 (380)
Q Consensus 160 ~~~~~~L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~~~~~~divIvREnteG~Y~g~e~~~~~~g~~e~~~~~~~g 239 (380)
. .+|+|||++|||+||||+|+||| +.+|++.. -+.|||||||||||+|+|.++.... + ..
T Consensus 90 ~-------~~~~s~~l~LRk~ldlyaNvRP~--~~~~g~~~-~~vD~vivREnTeG~Y~g~e~~~~~-~--------~~- 149 (366)
T 3ty4_A 90 V-------AGYSSPIVALRKKMGLYANVRPV--KSLDGAKG-KPVDLVIVRENTECLYVKEERMVQN-T--------PG- 149 (366)
T ss_dssp C-------TTCCCHHHHHHHHTTCCEEEEEE--ECCTTCSS-SCCEEEEEEECSCBGGGCCEEEEEC-C--------TT-
T ss_pred C-------cccccchHHHHHHhCCeEEEEEE--eccCCCCC-CCCcEEEEeeCCCCEeecCcceecc-C--------CC-
Confidence 1 25889999999999999999997 67888732 1479999999999999998875311 0 00
Q ss_pred CCcceeeecccCCcceeeecccCHHHHHHHHHHHHHHHhcC-------------CCCEEEEeCCCcccccchhHHHHHHH
Q 016961 240 TGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSK-------------KWPLYLSTKNTILKKYDGRFKDIFQQ 306 (380)
Q Consensus 240 ~~~~~~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~r-------------k~~Vt~v~KaNVLk~tdglf~~i~~e 306 (380)
+..+.++++||++++|||+|+||+||++| +++||+|||+|||+.++|+|+++|+|
T Consensus 150 ------------~~~a~~~~~~Tr~~~eRIar~AFe~A~~r~~~~~~~~~~~~~rkkVt~v~KaNVl~~s~glf~~~~~e 217 (366)
T 3ty4_A 150 ------------KRVAEAIRRISEEASTKIGKMAFEIAKSRQKIRESGTYSIHKKPLVTIIHKSNVMSVTDGLFRESCRH 217 (366)
T ss_dssp ------------CCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCSSCEEEEEECTTTCTTHHHHHHHHHHH
T ss_pred ------------CceEEEEEEecHHHHHHHHHHHHHHHHhcCccccccccccCCCCeEEEEECCcchHhHHHHHHHHHHH
Confidence 11245678899999999999999999998 67899999999999999999999999
Q ss_pred H---HHHhhhcccCCCCeeEehhhHHHHHHHHHHCCCCc-EEEeCCchhhHHHhhhhhccCCccccCCCCCCCCC
Q 016961 307 V---YEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPN 377 (380)
Q Consensus 307 V---a~~eY~~~~~~p~I~~e~~lIDa~a~~LVk~P~~F-ViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~p~ 377 (380)
| ++ +| |+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+ ||+|++++
T Consensus 218 v~~~a~-ey------pdV~~~~~~VD~~am~lv~~P~~FDViVt~NlfGDILSD~aa~l~GslGl~-pSanig~~ 284 (366)
T 3ty4_A 218 AQSLDP-SY------ASINVDEQIVDSMVYRLFREPECFDVVVAPNLYGDILSDGAASLIGSLGLV-PSANVGDN 284 (366)
T ss_dssp HGGGCG-GG------TTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHGGGSCGGGC-CCEEECSS
T ss_pred HHHhHh-hC------CCceEEeeeHHHHHHHHHhCcccCcEEEECccchHHHHHHHHHhcCchhhh-cceeeCCC
Confidence 9 66 89 999999999999999999999999 99999999999999999999999999 67998875
No 15
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A*
Probab=100.00 E-value=2.8e-77 Score=597.20 Aligned_cols=260 Identities=16% Similarity=0.131 Sum_probs=225.9
Q ss_pred cccccEEEEcCCccHHHHHHHHHHHHhcC----CCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCc
Q 016961 83 KVQNPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDE 158 (380)
Q Consensus 83 ~~~~~IvvlpGDgIGpEV~~~~~~~l~~~----g~~i~~~~~d~G~~~~d~tG~~lp~etleaik~~da~lkGa~~tP~~ 158 (380)
+-.++|++|||||||||||++++++|.+. +++|+|+++++|+++|++||+++|+|++++|+++|++||||+++|..
T Consensus 11 ~~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~g~~~~~~~~~~G~~~~~~~G~~lp~etl~~~~~~da~L~Gavg~P~~ 90 (375)
T 3vmk_A 11 GSSYQIAVLAGDGIGPEVMAEARKVLAAVEKRFDLSIEYSEYDVGGAAIDNHGCPLPEATLKGCEAADAVLFGSVGGPKW 90 (375)
T ss_dssp TSCEEEEEEEESTTHHHHHHHHHHHHHHHHHHTTCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGGG
T ss_pred CCcceEEEECCCcccHHHHHHHHHHHHHHHHhcCCCEEEEEEECCHHHHHhhCCcCCHHHHHHHHHCCeEEECCcCCCCc
Confidence 34579999999999999999999888543 79999999999999999999999999999999999999999999964
Q ss_pred chhhhhcccccCCCCchhHhhhcCCeEEeeecccCCCCCCC--C-------CCCCCEEEEeeccCccccccceeecCCCc
Q 016961 159 TRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIV--P-------GWKKPICIGRHAFGDQYRATDTVIKGPGK 229 (380)
Q Consensus 159 ~~~~~~~L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~--~-------~~~~divIvREnteG~Y~g~e~~~~~~g~ 229 (380)
+.++. ....|++||++|||+||||||+||| +.+|++. + .++.|||||||||||+|+|.++.....
T Consensus 91 ~~~~~--~~~~~~~~~l~LRk~ldLyaNvRP~--~~~pg~~~~splk~~~~~~~vD~vIvREnTeG~Y~g~~~~~~~~-- 164 (375)
T 3vmk_A 91 EHLPP--NDQPERGALLPLRGHFELFCNMRPA--KLHPGLEHMSPLRSDISEKGFDILCVRELTGGIYFGKPKGRQGE-- 164 (375)
T ss_dssp TTSCS--TTSHHHHHHHHHHHHTTCCEEEEEE--ECCTTCGGGSSBCHHHHTTCCEEEEEEECSSBTTTCSSCEEECC--
T ss_pred cCCCc--cccccccchHHHHHHcCCeEEEEEE--eccCCCcccCCCCcccccCCCCEEEEeeCCCCEecCCccccccC--
Confidence 32211 1234556789999999999999998 5667663 2 246899999999999999986543100
Q ss_pred eeeeecCCCCCCcceeeecccCCcceeeecccCHHHHHHHHHHHHHHHhcCCCCEEEEeCCCcccccchhHHHHHHHHHH
Q 016961 230 LKMVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYE 309 (380)
Q Consensus 230 ~e~~~~~~~g~~~~~~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk~~Vt~v~KaNVLk~tdglf~~i~~eVa~ 309 (380)
.+ +..+.++++|||+++|||+|+||+||++|+++||+|||+|||+ ++|+|+++|+|||+
T Consensus 165 --------~~------------~~~a~~~~~~Tr~~~eRIar~AFe~A~~rrkkVT~v~KaNvl~-~~glf~~~~~eva~ 223 (375)
T 3vmk_A 165 --------GE------------NEEAFDTMRYSRKEIRRIAKIAFESAQGRRKKVTSVDKANVLA-CSVLWREVVEEVAK 223 (375)
T ss_dssp --------GG------------GCEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHHHT
T ss_pred --------CC------------CceEEEEEEEcHHHHHHHHHHHHHHHHHcCCcEEEEECchhhh-hhhHHHHHHHHHHH
Confidence 00 1124567889999999999999999999999999999999998 67999999999998
Q ss_pred HhhhcccCCCCeeEehhhHHHHHHHHHHCCCCc-EEEeCCchhhHHHhhhhhccCCccccCCCCCCCCC
Q 016961 310 ERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPN 377 (380)
Q Consensus 310 ~eY~~~~~~p~I~~e~~lIDa~a~~LVk~P~~F-ViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~p~ 377 (380)
+| |+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+ ||+|++|+
T Consensus 224 -ey------pdV~~~~~~VD~~am~lv~~P~~FDViVt~NlfGDILSD~aa~l~GslGl~-pSanig~~ 284 (375)
T 3vmk_A 224 -DY------PDVELEHIYIDNATMQLLRRPNEFDVMLCSNLFGDIVSDEIAMLTGSMGLL-ASISMNSQ 284 (375)
T ss_dssp -TC------TTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGC-EEEEECTT
T ss_pred -HC------CCceEeeeeHHHHHHHHHhCcccCcEEEECchhHHHHHHHHHHhcCCcccc-ceeeeCCC
Confidence 89 999999999999999999999999 99999999999999999999999999 68999886
No 16
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A*
Probab=100.00 E-value=4.4e-77 Score=602.27 Aligned_cols=273 Identities=19% Similarity=0.188 Sum_probs=225.9
Q ss_pred ccccccc--cEEEEcCCccHHHHHHHHHHHHhcC-------CCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeee
Q 016961 80 DRVKVQN--PIVEMDGDEMTRIIWQMIKDKLIFP-------YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIK 150 (380)
Q Consensus 80 ~~~~~~~--~IvvlpGDgIGpEV~~~~~~~l~~~-------g~~i~~~~~d~G~~~~d~tG~~lp~etleaik~~da~lk 150 (380)
+|+.|.+ +|++|||||||||||++++++|.+. +++|+|+++++|+++|++||+++|+||+++|+++|++||
T Consensus 17 ~~~~vp~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~Lk 96 (409)
T 2e0c_A 17 GKWIVPNKPVILYIEGDGIGPEITNAAIKVINKAVERAYGSSREIKWLEVYAGEKAEKLVNDRFPKETQEMLLKYRVVLK 96 (409)
T ss_dssp SCEECCSSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCCTHHHHHHHSCSSCHHHHHHHHHHCEEEE
T ss_pred CeEecCCCceEeeCCCCCcCHHHHHHHHHHHHHHHHhhcCCCCceEEEEEechHHHHHhhCCcCCHHHHHHHHHCCEEEE
Confidence 4555654 7999999999999999999888543 389999999999999999999999999999999999999
Q ss_pred cCCCCCCcchhhhhcccccCCCCchhHhhhcCCeEEeeecccCCCCCCCCCC----CCCEEEEeeccCccccccceeecC
Q 016961 151 CATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW----KKPICIGRHAFGDQYRATDTVIKG 226 (380)
Q Consensus 151 Ga~~tP~~~~~~~~~L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~~~~----~~divIvREnteG~Y~g~e~~~~~ 226 (380)
||++||.. ++|+|+|++||++||||+|+||| +.+|++.+++ +.|||||||||||+|+|.++....
T Consensus 97 Gav~tP~~---------~~~~s~~l~LR~~LdlyanvRPv--~~~~g~~splk~~~~vDivIvREnteg~Y~g~e~~~~~ 165 (409)
T 2e0c_A 97 GPLETPIG---------KGWKSVNVAIRLMLDLYANIRPV--KYIEGLESPLKHPEKVDMIIFRENTDDLYRGIEYPFNS 165 (409)
T ss_dssp CCCC-----------------CHHHHHHHHTTCCEEEEEE--ECCTTCCCSBSCCTTCEEEEEEECSSGGGGCCEECTTS
T ss_pred CCccCCCc---------ccccChhHHHHHHcCCEEEEEEE--eccCCCCCCCCCccCCcEEEEEcCCCCEeCCcccccCC
Confidence 99999953 46899999999999999999998 4566665443 479999999999999999875321
Q ss_pred CCceeee-ecCCCCCCcceeeecccCCcceeeecccCHHHHHHHHHHHHHHHhcCC-CCEEEEeCCCcccccchhHHHHH
Q 016961 227 PGKLKMV-FDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIF 304 (380)
Q Consensus 227 ~g~~e~~-~~~~~g~~~~~~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk-~~Vt~v~KaNVLk~tdglf~~i~ 304 (380)
++..++. |.+. +.. +.++++.+..+++||+++++||+|+||+||++|+ ++||+|||+||||.|||+|+++|
T Consensus 166 ~~~~~v~~f~~~------~~~-~~~~~~~a~~~~~~t~~~~eRiar~AFe~A~~r~rkkVt~v~KaNVlk~sdglf~~~~ 238 (409)
T 2e0c_A 166 EEAKKIRDFLRK------ELK-VEIEDDTGIGIKVMSKYKTQRITRLAIQYAIEHKRKKVTIMHKGNVMKYTEGAFREWA 238 (409)
T ss_dssp HHHHHHHHHHHH------HSC-CCCCSSEEEEEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEEECTTTSTTTHHHHHHHH
T ss_pred Ccccchhhccch------hcc-ccCCCceEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECccchhhhhhHHHHHH
Confidence 1111110 1100 001 1234445667788999999999999999999985 56999999999999999999999
Q ss_pred HHHHHHhhhcccCCCC-----------------eeEehhhHHHHHHHHHHCCCCc-EEEeCCchhhHHHhhhhhccCCcc
Q 016961 305 QQVYEERWRQKFEEHS-----------------IWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGTVSAH 366 (380)
Q Consensus 305 ~eVa~~eY~~~~~~p~-----------------I~~e~~lIDa~a~~LVk~P~~F-ViVt~NLfGDILSDlaA~l~GsLG 366 (380)
+|||+++| |+ |+++|+|||+||||||++|++| ||||+|||||||||++|+++||||
T Consensus 239 ~eva~~ey------pd~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~aa~l~GslG 312 (409)
T 2e0c_A 239 YEVALKEY------RDFIVTEEEINQGKPDQGKIILNDRIADNMFQQIIIRPEEYDIILAPNVNGDYISDAAGALIGNIG 312 (409)
T ss_dssp HHHHHHHS------TTTEEEHHHHTTTCCCTTSEEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHTTSCGG
T ss_pred HHHHHHhC------CCccccccccccccccCCeEEEEEEEHHHHHHHHhhCcccccEEEECCcchHHHHHHHHHhcCCcc
Confidence 99997689 76 9999999999999999999999 999999999999999999999999
Q ss_pred ccCCCCCCCCC
Q 016961 367 SSAFEVSRAPN 377 (380)
Q Consensus 367 lap~~~~~~p~ 377 (380)
|+ ||+|++|+
T Consensus 313 l~-pSanig~~ 322 (409)
T 2e0c_A 313 ML-GGANIGDE 322 (409)
T ss_dssp GC-EEEEEETT
T ss_pred cC-ceEEECCC
Confidence 99 68898875
No 17
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A*
Probab=100.00 E-value=1.5e-77 Score=594.67 Aligned_cols=250 Identities=12% Similarity=0.123 Sum_probs=227.5
Q ss_pred cccccccEEEEcCCccHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcch
Q 016961 81 RVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETR 160 (380)
Q Consensus 81 ~~~~~~~IvvlpGDgIGpEV~~~~~~~l~~~g~~i~~~~~d~G~~~~d~tG~~lp~etleaik~~da~lkGa~~tP~~~~ 160 (380)
+++..++|++||||||||||+++++++|.+.+++|+|+++++|+ +||+++|+|++++|+++|++||||+++|.. +
T Consensus 13 ~~~~~~~I~vipGDGIGpEv~~~~~~Vl~a~~~~i~~~~~~~G~----~~g~~lp~~tl~~~~~~da~l~Gav~~P~~-~ 87 (349)
T 3blx_A 13 KYGGRFTVTLIPGDGVGKEITDSVRTIFEAENIPIDWETINIKQ----TDHKEGVYEAVESLKRNKIGLKGLWHTPAD-Q 87 (349)
T ss_dssp CCCCCEEEEEEEESHHHHHHHHHHHHHHHHTTCSEEEEECCCSS----TTCHHHHHHHHHHHHHHSEEEEEECCSHHH-H
T ss_pred ccCCceEEEEECCCCcCHHHHHHHHHHHHHcCCCeEEEEEecCc----ccCCcCcHHHHHHHHHCCEEEECCccCCCC-C
Confidence 56666899999999999999999999998889999999999998 899999999999999999999999999942 1
Q ss_pred hhhhcccccCCCCchhHhhhcCCeEEeeecccCCCCCCCCCCC-CCEEEEeeccCccccccceeecCCCceeeeecCCCC
Q 016961 161 MKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWK-KPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDG 239 (380)
Q Consensus 161 ~~~~~L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~~~~~-~divIvREnteG~Y~g~e~~~~~~g~~e~~~~~~~g 239 (380)
.+|+|+|++|||+||||+|+||| +.+|++.++++ .|||||||||||+|+|.++... +|
T Consensus 88 -------~~~~s~~l~lR~~ldlyan~RP~--~~~pg~~~~~~~vD~vivREnteg~Y~g~e~~~~-~g----------- 146 (349)
T 3blx_A 88 -------TGHGSLNVALRKQLDIYANVALF--KSLKGVKTRIPDIDLIVIRENTEGEFSGLEHESV-PG----------- 146 (349)
T ss_dssp -------HTCHHHHHHHHHTSCEEEEEEEE--ECCTTCCCSSCSCEEEEEEECSSGGGGCEEEECS-TT-----------
T ss_pred -------CCccCchHHHHHHcCCEEEEEEE--eccCCCCCCCCCcCEEEEecCCCCcEeCCceecc-CC-----------
Confidence 35789999999999999999998 67888877774 8999999999999999876421 11
Q ss_pred CCcceeeecccCCcceeeecccCHHHHHHHHHHHHHHHhcC-CCCEEEEeCCCcccccchhHHHHHHHHHHHhhhcccCC
Q 016961 240 TGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSK-KWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEE 318 (380)
Q Consensus 240 ~~~~~~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~r-k~~Vt~v~KaNVLk~tdglf~~i~~eVa~~eY~~~~~~ 318 (380)
.+.++++||++++|||+|+||+||++| +++||+|||+||||.+||+|+++|+|||+++|
T Consensus 147 --------------va~~~~~~T~~~~eRiar~AF~~A~~r~rkkVt~v~KaNvlk~sdglf~~~~~eva~~ey------ 206 (349)
T 3blx_A 147 --------------VVESLKVMTRPKTERIARFAFDFAKKYNRKSVTAVHKANIMKLGDGLFRNIITEIGQKEY------ 206 (349)
T ss_dssp --------------EEEEEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEEECTTTSTTHHHHHHHHHHHHHHHHC------
T ss_pred --------------eEEEEEEeCHHHHHHHHHHHHHHHHhcCCCcEEEEeCCccchhhHHHHHHHHHHHHHhhC------
Confidence 134567799999999999999999999 56899999999999999999999999994489
Q ss_pred CCeeEehhhHHHHHHHHHHCCCCc-EEEeCCchhhHHHhhhhhccCCccccCCCCCCCCC
Q 016961 319 HSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPN 377 (380)
Q Consensus 319 p~I~~e~~lIDa~a~~LVk~P~~F-ViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~p~ 377 (380)
|+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+ ||+|++|+
T Consensus 207 p~i~~~~~~vD~~~~qlv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~-pSanig~~ 265 (349)
T 3blx_A 207 PDIDVSSIIVDNASMQAVAKPHQFDVLVTPSMYGTILGNIGAALIGGPGLV-AGANFGRD 265 (349)
T ss_dssp TTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGC-EEEEEESS
T ss_pred CCeeEEEeeHHHHHHHHhhCcccccEEEECCcchHHHHHHHHhhcCCcccc-eEEEECCC
Confidence 999999999999999999999999 99999999999999999999999999 78999886
No 18
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus}
Probab=100.00 E-value=1.4e-76 Score=606.92 Aligned_cols=254 Identities=19% Similarity=0.175 Sum_probs=232.7
Q ss_pred ccccccc----ccEEEEcCCccHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcC-CCCcHHHHHHHHhcCeeeecCC
Q 016961 79 IDRVKVQ----NPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATD-DKVTVESAEATLKYNVAIKCAT 153 (380)
Q Consensus 79 ~~~~~~~----~~IvvlpGDgIGpEV~~~~~~~l~~~g~~i~~~~~d~G~~~~d~tG-~~lp~etleaik~~da~lkGa~ 153 (380)
.+||.|. ++|++||||||||||+++++++|.+.+++|+|+++++|+++|++|| +++|+|++++|+++|++||||+
T Consensus 9 ~~~i~~~~~g~~~IavipGDGIGpEV~~~a~~VL~a~~~~ie~~~~~~G~~~~~~~G~~~lp~etle~ik~~daiLkGav 88 (496)
T 2d1c_A 9 GKKMHVLEDGRKLITVIPGDGIGPECVEATLKVLEAAKAPLAYEVREAGASVFRRGIASGVPQETIESIRKTRVVLKGPL 88 (496)
T ss_dssp SCEEEECTTSCEEEEEECCSTTHHHHHHHHHHHHHHTTCCEEEEECCCSHHHHTTTCTTSCCHHHHHHHHHHCEEEECCC
T ss_pred CceeEeccCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEecCHHHHhccCCCcCcHHHHHHHHHCCEEEECCc
Confidence 3567666 7999999999999999999999988899999999999999999999 9999999999999999999999
Q ss_pred CCCCcchhhhhcccccCCCCchhHhhhcCCeEEeeecccCCCCCCCCCC---CCCEEEEeeccCccccccceeecCCCce
Q 016961 154 ITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW---KKPICIGRHAFGDQYRATDTVIKGPGKL 230 (380)
Q Consensus 154 ~tP~~~~~~~~~L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~~~~---~~divIvREnteG~Y~g~e~~~~~~g~~ 230 (380)
++|.+ ++|+|+|++||++||||+|+||| +.+|++.+++ ..|++||||||||+|+|.++... ++
T Consensus 89 gtP~~---------~~~~s~~l~LRk~LdLyaNlRP~--k~~pgl~splk~~~vD~vIVREnTEG~Y~G~e~~~~-~~-- 154 (496)
T 2d1c_A 89 ETPVG---------YGEKSANVTLRKLFETYANVRPV--REFPNVPTPYAGRGIDLVVVRENVEDLYAGIEHMQT-PS-- 154 (496)
T ss_dssp CCCSS---------SSSCCHHHHHHHHTTCCEEEEEE--ECBTTBCCTTTTSCCEEEEEEECSSBGGGCCEEEEE-TT--
T ss_pred cCCCc---------ccccChHHHHHHHhCCEEEEEEE--eecCCCCccccCCCccEEEEeeCcCceEeceeEecC-CC--
Confidence 99963 46899999999999999999997 6788876665 57999999999999999876431 11
Q ss_pred eeeecCCCCCCcceeeecccCCcceeeecccCHHHHHHHHHHHHHHHhcC-CCCEEEEeCCCcccccchhHHHHHHHHHH
Q 016961 231 KMVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSK-KWPLYLSTKNTILKKYDGRFKDIFQQVYE 309 (380)
Q Consensus 231 e~~~~~~~g~~~~~~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~r-k~~Vt~v~KaNVLk~tdglf~~i~~eVa~ 309 (380)
.+..+++||++++|||+|+||+||++| +++||+|||+||||.+||+|+++|+||++
T Consensus 155 -----------------------va~~~~v~Tr~~ieRIar~AFe~A~~r~rkkVT~V~KaNVlk~sdGlfr~v~~eVa~ 211 (496)
T 2d1c_A 155 -----------------------VAQTLKLISWKGSEKIVRFAFELARAEGRKKVHCATKSNIMKLAEGTLKRAFEQVAQ 211 (496)
T ss_dssp -----------------------EEEEEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEEECTTTCTTHHHHHHHHHHHHHT
T ss_pred -----------------------eEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCCchhhHHHHHHHHHHHHHH
Confidence 234556689999999999999999999 57899999999999999999999999987
Q ss_pred HhhhcccCCCCeeEehhhHHHHHHHHHHCCCCc-EEEeCCchhhHHHhhhhhccCCccccCCCCCCCCC
Q 016961 310 ERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPN 377 (380)
Q Consensus 310 ~eY~~~~~~p~I~~e~~lIDa~a~~LVk~P~~F-ViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~p~ 377 (380)
+| |+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+ ||+|++|+
T Consensus 212 -eY------PdI~~e~~~VD~~amqLV~~P~~FDVIVt~NLfGDILSDlaA~l~GslGla-pSanig~~ 272 (496)
T 2d1c_A 212 -EY------PDIEAVHIIVDNAAHQLVKRPEQFEVIVTTNMNGDILSDLTSGLIGGLGFA-PSANIGNE 272 (496)
T ss_dssp -TC------TTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHTTTTCGGGC-EEEEECSS
T ss_pred -HC------CCceEEEEeHHHHHHHHhhCcCcceEEEECCcchHHHHHHHHHhcCCcccC-cEEEECCC
Confidence 89 999999999999999999999999 99999999999999999999999999 78999987
No 19
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B
Probab=100.00 E-value=1.2e-77 Score=596.32 Aligned_cols=251 Identities=17% Similarity=0.180 Sum_probs=228.8
Q ss_pred cccccccEEEEcCCccHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcch
Q 016961 81 RVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETR 160 (380)
Q Consensus 81 ~~~~~~~IvvlpGDgIGpEV~~~~~~~l~~~g~~i~~~~~d~G~~~~d~tG~~lp~etleaik~~da~lkGa~~tP~~~~ 160 (380)
+++..++|++||||||||||+++++++|.+.+++|+|+++++|+++ ++||+++|+|++++|+++|++||||+++|..
T Consensus 17 ~~~~~~~I~vipGDGIGpEv~~~~~~Vl~a~~~~i~~~~~~~G~~~-~~~g~~lp~~tl~~~~~~da~l~Gav~~P~~-- 93 (354)
T 3blx_B 17 PSTGKYTVSFIEGDGIGPEISKSVKKIFSAANVPIEWESCDVSPIF-VNGLTTIPDPAVQSITKNLVALKGPLATPIG-- 93 (354)
T ss_dssp TTTSCEECBCCCCSTTHHHHHHHHHHHHHTTTCSEECCCCCCCCEE-ETTEEECCHHHHHHHHHHSEEEECCCCCC----
T ss_pred hcCCceEEEEECCCCcCHHHHHHHHHHHHHcCCCeEEEEEEechhh-hhhCCCCCHHHHHHHHHCCEEEECCccCCCC--
Confidence 4545579999999999999999999999888999999999999999 9999999999999999999999999999963
Q ss_pred hhhhcccccCCCCchhHhhhcCCeEEeeecccCCCCCCCCCCC-CCEEEEeeccCccccccceeecCCCceeeeecCCCC
Q 016961 161 MKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWK-KPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDG 239 (380)
Q Consensus 161 ~~~~~L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~~~~~-~divIvREnteG~Y~g~e~~~~~~g~~e~~~~~~~g 239 (380)
.+|+|+|++||++||||+|+||| +.+|++.++++ .|||||||||||+|+|.++... +
T Consensus 94 -------~~~~s~~l~lR~~ldlyan~RP~--~~~pg~~s~~~~vD~vivREnteg~Y~g~e~~~~-~------------ 151 (354)
T 3blx_B 94 -------KGHRSLNLTLRKTFGLFANVRPA--KSIEGFKTTYENVDLVLIRENTEGEYSGIEHIVC-P------------ 151 (354)
T ss_dssp ---------CCCHHHHHHHHHTEEEEEEEE--ECCTTCCCSSCSCEEEEEEECSSEEEEEEEEECS-T------------
T ss_pred -------ccccCchHHHHHHcCCEEEEEEe--cccCCCCCCCCCccEEEEecCcCCcccCCccccc-C------------
Confidence 35889999999999999999998 67888877774 8999999999999999876421 1
Q ss_pred CCcceeeecccCCcceeeecccCHHHHHHHHHHHHHHHhcC-CCCEEEEeCCCcccccchhHHHHHHHHHHHhhhcccCC
Q 016961 240 TGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSK-KWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEE 318 (380)
Q Consensus 240 ~~~~~~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~r-k~~Vt~v~KaNVLk~tdglf~~i~~eVa~~eY~~~~~~ 318 (380)
+.+.++++||++++|||+|+||+||++| +++||+|||+||||.+||+|+++|+|||+ ||
T Consensus 152 -------------~~a~~~~~~T~~~~eRiar~AFe~A~~r~rkkVt~v~KaNvlk~sdglf~~~~~eva~-ey------ 211 (354)
T 3blx_B 152 -------------GVVQSIKLITRDASERVIRYAFEYARAIGRPRVIVVHKSTIQRLADGLFVNVAKELSK-EY------ 211 (354)
T ss_dssp -------------TEEEEEEEEEHHHHHHHHHHHHHHHHHTTCSEEEEEESCTTTCHHHHHHHHHHHHHGG-GC------
T ss_pred -------------CEEEEEEEEcHHHHHHHHHHHHHHHHhcCCCeEEEEECCcchHhHHHHHHHHHHHHHH-HC------
Confidence 1244677899999999999999999999 57899999999999999999999999997 89
Q ss_pred CCeeEehhhHHHHHHHHHHCCCCc---EEEeCCchhhHHHhhhhhc-cCCccccCCCCCCCCC
Q 016961 319 HSIWYEHRLIDDMVAYAIKSEGGY---VWACKNYDGDVQSDLLAQG-TVSAHSSAFEVSRAPN 377 (380)
Q Consensus 319 p~I~~e~~lIDa~a~~LVk~P~~F---ViVt~NLfGDILSDlaA~l-~GsLGlap~~~~~~p~ 377 (380)
|+|+++|+|||+||||||++|++| ||||+|||||||||++|++ +|||||+ ||+|++|+
T Consensus 212 pdI~~~~~~vD~~~m~lv~~P~~FD~~Vivt~NlfGDIlSD~aa~l~~GslGl~-pSanig~~ 273 (354)
T 3blx_B 212 PDLTLETELIDNSVLKVVTNPSAYTDAVSVCPNLYGDILSDLNSGLSAGSLGLT-PSANIGHK 273 (354)
T ss_dssp TTSEEEEEEHHHHHHHHHHCGGGGTTEEEEECHHHHHHHHHHHHHHHTSSGGGC-EEEEEESS
T ss_pred CCceEEEEEHHHHHHHHhhChhhCCceEEEecCcccchhHHHHHhhccCCcccc-ceeEECCC
Confidence 999999999999999999999999 9999999999999999999 9999999 78999886
No 20
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus}
Probab=100.00 E-value=1.8e-77 Score=605.30 Aligned_cols=273 Identities=18% Similarity=0.144 Sum_probs=231.9
Q ss_pred cccccc--ccEEEEcCCccHHHHHHHHHHHHhcC----CCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCC
Q 016961 80 DRVKVQ--NPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCAT 153 (380)
Q Consensus 80 ~~~~~~--~~IvvlpGDgIGpEV~~~~~~~l~~~----g~~i~~~~~d~G~~~~d~tG~~lp~etleaik~~da~lkGa~ 153 (380)
.|++|. .+|++|||||||||||++++++|.+. +++|+|+++++|+++|++||+++|+||+++|+++|++||||+
T Consensus 20 ~~~~vp~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~etl~~~k~~da~LkGav 99 (412)
T 2iv0_A 20 GKLIVPDNPIIPYFEGDGIGKDVVPAAIRVLDAAADKIGKEVVWFQVYAGEDAYKLYGNYLPDDTLNAIKEFRVALKGPL 99 (412)
T ss_dssp TEEECCSSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHTCCCEEEECCCSHHHHHHHSCSSCHHHHHHHHHHCEEEECCC
T ss_pred CeEeCCCCCEEEEECCCCcCHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECCc
Confidence 456665 35999999999999999999988654 899999999999999999999999999999999999999999
Q ss_pred CCCCcchhhhhcccccCCCCchhHhhhcCCeEEeeecccCCCCCCCCCC----CCCEEEEeeccCccccccceeecCCCc
Q 016961 154 ITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW----KKPICIGRHAFGDQYRATDTVIKGPGK 229 (380)
Q Consensus 154 ~tP~~~~~~~~~L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~~~~----~~divIvREnteG~Y~g~e~~~~~~g~ 229 (380)
+||.. ++|+|+|++||++||||+|+||| +.+|++.+++ +.|||||||||||+|+|.++....++.
T Consensus 100 ~tP~~---------~~~~s~~l~LR~~Ldlyan~RPv--~~~~g~~splk~~~~vDivIvREnTeg~Y~G~e~~~~~~~~ 168 (412)
T 2iv0_A 100 TTPVG---------GGYRSLNVTIRQVLDLYANVRPV--YYLKGVPSPIKHPEKVNFVIFRENTEDVYAGIEWPRGSEEA 168 (412)
T ss_dssp CCCSS---------SSSSHHHHHHHHHTTCCEEEEEE--ECCTTSCCSBSCGGGCEEEEEEECSSSGGGCCEECTTCHHH
T ss_pred cCCCC---------ccccChhHHHHHHcCCeEEEEEE--EecCCCCCCCCCcCCCCEEEEecCCCCEeCCcccccCCccc
Confidence 99953 46899999999999999999998 4566665544 379999999999999999875311111
Q ss_pred eee-eecCCCCCCcceeeecccCCcceeeecccCHHHHHHHHHHHHHHHhcCC-CCEEEEeCCCcccccchhHHHHHHHH
Q 016961 230 LKM-VFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQV 307 (380)
Q Consensus 230 ~e~-~~~~~~g~~~~~~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk-~~Vt~v~KaNVLk~tdglf~~i~~eV 307 (380)
.++ .|.+.+ .. +.++++.+..+..||+++++||+|+||+||++|+ ++||+|||+||||.|+|+|+++|+||
T Consensus 169 ~~v~~~~~~~------~~-~~~~~~~a~~~~~~t~~~~eRiar~AFe~A~~r~rkkVt~v~KaNVlk~t~Glf~~~~~ev 241 (412)
T 2iv0_A 169 LKLIRFLKNE------FG-VTIREDSGIGIKPISEFATKRLVRMAIRYAIENNRKSVTLVHKGNIMKYTEGAFRDWGYEV 241 (412)
T ss_dssp HHHHHHHHHH------HC-CCCCTTEEEEEEEEEHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTCTTTHHHHHHHHHHH
T ss_pred cchhhccccc------cc-ccCCCceEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECccchhhhhHHHHHHHHHH
Confidence 000 011000 00 1233444567788999999999999999999985 56999999999999999999999999
Q ss_pred HHHhhhcccCCCC--------------------eeEehhhHHHHHHHHHHCCCCc-EEEeCCchhhHHHhhhhhccCCcc
Q 016961 308 YEERWRQKFEEHS--------------------IWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGTVSAH 366 (380)
Q Consensus 308 a~~eY~~~~~~p~--------------------I~~e~~lIDa~a~~LVk~P~~F-ViVt~NLfGDILSDlaA~l~GsLG 366 (380)
|++|| |+ |+++|+|||+||||||++|++| ||||+|||||||||++|+++||||
T Consensus 242 a~~ey------pd~~~~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~aA~l~GslG 315 (412)
T 2iv0_A 242 AKQEF------GEYCITEDELWDKYGGKQPEGKIVVKDRIADNMFQQILTRTDEYDVIALPNLNGDYLSDAAAALIGGLG 315 (412)
T ss_dssp HHHHS------TTTEECHHHHHHHHTTCCCTTCEEEEEEEGGGHHHHHHHSGGGCCEEEECHHHHHHHHHHHHHHTTCGG
T ss_pred HHHhC------CCccccccchhhhccccccCCeEEEEEEEHHHHHHHHhhCcccccEEEECCcchHHHHHHHHHhcCCcc
Confidence 97689 66 9999999999999999999999 999999999999999999999999
Q ss_pred ccCCCCCCCCC
Q 016961 367 SSAFEVSRAPN 377 (380)
Q Consensus 367 lap~~~~~~p~ 377 (380)
|+ ||+|++++
T Consensus 316 la-psanig~~ 325 (412)
T 2iv0_A 316 IA-PGSNIGDG 325 (412)
T ss_dssp GC-EEEEEETT
T ss_pred cc-ceEEECCC
Confidence 99 78998865
No 21
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans}
Probab=100.00 E-value=1.2e-76 Score=601.60 Aligned_cols=270 Identities=19% Similarity=0.143 Sum_probs=231.2
Q ss_pred ccEEEEcCCccHHHHHHHHHHHHhcC-------CCCeEEEEEecchHHHhhcCC--CCcHHHHHHHHhcCeeeecCCCCC
Q 016961 86 NPIVEMDGDEMTRIIWQMIKDKLIFP-------YLDLDIKYYDLGILNRDATDD--KVTVESAEATLKYNVAIKCATITP 156 (380)
Q Consensus 86 ~~IvvlpGDgIGpEV~~~~~~~l~~~-------g~~i~~~~~d~G~~~~d~tG~--~lp~etleaik~~da~lkGa~~tP 156 (380)
.+|++|||||||||||++++++|.+. +++|+|+++++|.+++++||+ ++|+|++++|+++|++||||++||
T Consensus 27 ~~I~vipGDGIGpEV~~aa~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~~~lp~etl~~~k~~da~lkGav~tP 106 (429)
T 2d4v_A 27 PIIPFIEGDGIGCDVTPAMRSVVDAAVAKVYGGQRQIAWMELFAGQKAVQLYGEGQYLPDETMAAIREYKVAIKGPLETP 106 (429)
T ss_dssp BEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEECCTHHHHHHHCTTCSSCHHHHHHHHHHCEEEECCCCCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHHhhcCCCCceEEEEEeeehhhhhccCCCCCCcHHHHHHHHHCCEEEECCccCC
Confidence 46999999999999999999888543 389999999999999999999 999999999999999999999999
Q ss_pred CcchhhhhcccccCCCCchhHhhhcCCeEEeeecccCCCCCCCCCC----CCCEEEEeeccCccccccceeecCCCceee
Q 016961 157 DETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW----KKPICIGRHAFGDQYRATDTVIKGPGKLKM 232 (380)
Q Consensus 157 ~~~~~~~~~L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~~~~----~~divIvREnteG~Y~g~e~~~~~~g~~e~ 232 (380)
.+ ++|+|+|++||++||||+|+||| +.+|++.+++ +.|||||||||||+|+|.++....++..++
T Consensus 107 ~~---------~~~~s~~l~LRk~LdLyanvRPv--~~~~gv~splk~~~~vDivIvREnTeg~Y~G~e~~~~~~~~~~v 175 (429)
T 2d4v_A 107 VG---------GGIRSLNVAMRQDLDLYVCLRPV--RYFEGTPSPMRHPEKVDMVIFRENSEDIYAGIEWPAGSPEAEKI 175 (429)
T ss_dssp SS---------SSSCCHHHHHHHHTTCCEEEEEE--ECCTTCCCSBSCGGGCEEEEEEECSCGGGGCCEECTTCHHHHHH
T ss_pred Cc---------ccccChhHHHHHHcCCEEEEEEE--EecCCCCCCCCCcCCCCEEEEEeCCCCeecCcccccCCcccccc
Confidence 53 46899999999999999999998 5566665544 479999999999999999875321111111
Q ss_pred -eecCCCCCCcceeeecccCCcceeeecccCHHHHHHHHHHHHHHHhcCC-CCEEEEeCCCcccccchhHHHHHHHHHHH
Q 016961 233 -VFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKK-WPLYLSTKNTILKKYDGRFKDIFQQVYEE 310 (380)
Q Consensus 233 -~~~~~~g~~~~~~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk-~~Vt~v~KaNVLk~tdglf~~i~~eVa~~ 310 (380)
.|.+.+. .++.++++++.+.....||+++++||+|+||+||++|+ ++||+|||+||||.++|+|+++|+|||++
T Consensus 176 ~~~~~~~~----~~~~~~~~~~~a~~~~~~T~~~~eRIar~AFe~A~~r~rkkVT~v~KaNVlk~tdGlf~~~~~eva~~ 251 (429)
T 2d4v_A 176 IRFLREEM----GVTKIRFPDSSAIGIKPVSTEGSERLIRRTIQYALEHGKPSVSLVHKGNIMKFTEGGFRDWGYALAER 251 (429)
T ss_dssp HHHHHHTS----CCCCCSCGGGEEEEEEEEEHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTSTTTHHHHHHHHHHHHHH
T ss_pred eecccccc----ccccccCCCceEEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEECCccchhhhHHHHHHHHHHHHH
Confidence 1211111 12334455556667788999999999999999999985 56999999999999999999999999976
Q ss_pred hhhcccCCCC--------------------------------eeEehhhHHHHHHHHHHCCCCc-EEEeCCchhhHHHhh
Q 016961 311 RWRQKFEEHS--------------------------------IWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDL 357 (380)
Q Consensus 311 eY~~~~~~p~--------------------------------I~~e~~lIDa~a~~LVk~P~~F-ViVt~NLfGDILSDl 357 (380)
+| |+ |+++|+|||+||||||++|++| ||||+|||||||||+
T Consensus 252 ey------pd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~fDVivt~NlfGDILSD~ 325 (429)
T 2d4v_A 252 EF------AGRVFTWRQKAAISKAEGKAAGQKAEQQAIADGKLIIKDVIADNFLQQILLRPEDYSVVATLNLNGDYVSDA 325 (429)
T ss_dssp HS------TTTEEEHHHHHHHHHHHCHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHCGGGCCEEEECHHHHHHHHHH
T ss_pred hC------CCccccccccccccccccccccchhccccccCCeeEEEEeeHHHHHHHHhhCcccCcEEEECCcccHHHHHH
Confidence 89 77 9999999999999999999999 999999999999999
Q ss_pred hhhccCCccccCCCCCCCCC
Q 016961 358 LAQGTVSAHSSAFEVSRAPN 377 (380)
Q Consensus 358 aA~l~GsLGlap~~~~~~p~ 377 (380)
+|+++|||||+ ||+|++++
T Consensus 326 aA~l~GslGl~-pSanig~~ 344 (429)
T 2d4v_A 326 LAAEVGGIGMA-PGANLSDT 344 (429)
T ss_dssp HHHHTTCGGGC-CCEEECSS
T ss_pred HHHhcCCHhhc-CeeEECCC
Confidence 99999999999 68999875
No 22
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A
Probab=100.00 E-value=8.8e-77 Score=592.24 Aligned_cols=257 Identities=15% Similarity=0.068 Sum_probs=225.8
Q ss_pred ccEEEEcCCccHHHHHHHHHHHHhcC----CCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcchh
Q 016961 86 NPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRM 161 (380)
Q Consensus 86 ~~IvvlpGDgIGpEV~~~~~~~l~~~----g~~i~~~~~d~G~~~~d~tG~~lp~etleaik~~da~lkGa~~tP~~~~~ 161 (380)
++|++||||||||||+++++++|.+. +++|+|+++++|+++|++||+++|++++++|+++|++||||+++|....+
T Consensus 5 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~L~Gavg~p~~~~~ 84 (363)
T 1cnz_A 5 YHIAVLPGDGIGPEVMAQALKVMDAVRSRFDMRITTSHYDVGGIAIDNHGHPLPKATVEGCEQADAILFGSVGGPKWENL 84 (363)
T ss_dssp EEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGGGTTS
T ss_pred cEEEEeCCCCcCHHHHHHHHHHHHHHHHhcCCceEEEEEeCChHHHhhcCCcCcHHHHHHHHHCCEEEEccccCCccccC
Confidence 68999999999999999999988654 79999999999999999999999999999999999999999999964332
Q ss_pred hhhcccccCCCCchhHhhhcCCeEEeeecccCCCCCCC--CCC-------CCCEEEEeeccCccccccceeecCCCceee
Q 016961 162 KEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIV--PGW-------KKPICIGRHAFGDQYRATDTVIKGPGKLKM 232 (380)
Q Consensus 162 ~~~~L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~--~~~-------~~divIvREnteG~Y~g~e~~~~~~g~~e~ 232 (380)
+. ++ ..++++|++|||+||||+|+||| +.+|++. ++| +.||+||||||||+|+|.++... .
T Consensus 85 ~~-~~-~~e~~~~l~LR~~ldlyanvRP~--~~~pgl~~~splk~~~~~~~vDivivREnteg~Y~g~~~~~~-~----- 154 (363)
T 1cnz_A 85 PP-ES-QPERGALLPLRKHFKLFSNLRPA--KLYQGLEAFCPLRADIAANGFDILCVRELTGGIYFGQPKGRE-G----- 154 (363)
T ss_dssp CG-GG-STTHHHHHHHHHHHTCCEEEEEE--ECCTTCGGGCSBCHHHHHHCCEEEEEEECSSGGGTCSSCEEE-C-----
T ss_pred Cc-cc-CcccchHHHHHHHcCCEEEEEEE--EecCCccCCCCCcccccCCCCCEEEEecccCCeecCCcCccc-c-----
Confidence 22 11 35667899999999999999998 5678763 343 36999999999999999853221 0
Q ss_pred eecCCCCCCcceeeecccCCcceeeecccCHHHHHHHHHHHHHHHhcCCCCEEEEeCCCcccccchhHHHHHHHHHHHhh
Q 016961 233 VFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERW 312 (380)
Q Consensus 233 ~~~~~~g~~~~~~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk~~Vt~v~KaNVLk~tdglf~~i~~eVa~~eY 312 (380)
..+ ++.+.++++||+++++||+|+||+||++|+++||+|||+|||| ++|+|+++|+|||+ +|
T Consensus 155 ----~~~------------~~~a~~~~~~T~~~~eRiar~AFe~A~~rrkkVt~v~KaNvlk-~~~lf~~~~~eva~-ey 216 (363)
T 1cnz_A 155 ----SGQ------------YEKAFDTEVYHRFEIERIARIAFESARKRRRKVTSIDKANVLQ-SSILWREIVNDVAK-TY 216 (363)
T ss_dssp ----CGG------------GCEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHHHT-TC
T ss_pred ----CCC------------CceEEEEEEEcHHHHHHHHHHHHHHHHhcCCeEEEEECCcccc-cchhHHHHHHHHHH-HC
Confidence 000 1124577889999999999999999999988999999999999 89999999999997 89
Q ss_pred hcccCCCCeeEehhhHHHHHHHHHHCCCCc-EEEeCCchhhHHHhhhhhccCCccccCCCCCCCCC
Q 016961 313 RQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPN 377 (380)
Q Consensus 313 ~~~~~~p~I~~e~~lIDa~a~~LVk~P~~F-ViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~p~ 377 (380)
|+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+ ||+|++|+
T Consensus 217 ------pdI~~~~~~vD~~~m~lv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~-pSanig~~ 275 (363)
T 1cnz_A 217 ------PDVELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGML-PSASLNEQ 275 (363)
T ss_dssp ------TTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGC-EEEEECTT
T ss_pred ------CCceEeeeeHHHHHHHHhhCcccceEEEECCcchHHHHHHHHHhcCCCccc-ccceeCCC
Confidence 999999999999999999999999 99999999999999999999999999 78999986
No 23
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana}
Probab=100.00 E-value=7.4e-77 Score=598.41 Aligned_cols=260 Identities=15% Similarity=0.090 Sum_probs=223.6
Q ss_pred cccccEEEEcCCccHHHHHHHHHHHHhcC----CCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCc
Q 016961 83 KVQNPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDE 158 (380)
Q Consensus 83 ~~~~~IvvlpGDgIGpEV~~~~~~~l~~~----g~~i~~~~~d~G~~~~d~tG~~lp~etleaik~~da~lkGa~~tP~~ 158 (380)
+++++|++||||||||||+++++++|.+. +++|+|+++++|+++|++||+++|+|++++|+++|++||||+++|..
T Consensus 40 ~~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~k~~daiL~Gavg~P~~ 119 (405)
T 3r8w_A 40 KKRYTITLLPGDGIGPEVVSIAKNVLQQAGSLEGVEFNFREMPIGGAALDLVGVPLPEETISAAKESDAVLLGAIGGYKW 119 (405)
T ss_dssp -CEEEEEEEEESTTHHHHHHHHHHHHHHHHHHTTCEEEEEECCCHHHHHHHHSSSSCHHHHHHHHHSSEEEEEECCCGGG
T ss_pred CCCeEEEEECCCcccHHHHHHHHHHHHHHHHhcCCceEEEEEEcCHHHHHhhCCcCCHHHHHHHHHCCEEEEccccCCCc
Confidence 36689999999999999999999888543 79999999999999999999999999999999999999999999863
Q ss_pred chhhhhcccccCCCCchhHhhhcCCeEEeeecccCCCCCCC--CCC------CCCEEEEeeccCccccccceeecCCCce
Q 016961 159 TRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIV--PGW------KKPICIGRHAFGDQYRATDTVIKGPGKL 230 (380)
Q Consensus 159 ~~~~~~~L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~--~~~------~~divIvREnteG~Y~g~e~~~~~~g~~ 230 (380)
...+.. ..+.++|++|||+||||+|+||| +.+|++. +++ +.|||||||||||+|+|.++.....+
T Consensus 120 ~~~~~~---~~p~~~ll~LRk~ldLyaNlRP~--k~~~gl~~~splk~~~~~~vD~vIvREnTeG~Y~G~e~~~~~~~-- 192 (405)
T 3r8w_A 120 DNNEKH---LRPEKGLLQIRAALKVFANLRPA--TVLPQLVDASTLKREVAEGVDLMVVRELTGGIYFGEPRGIKTNE-- 192 (405)
T ss_dssp TTSCGG---GSHHHHHHHHHHHHTCCEEEEEE--ECCGGGGGGSSBCHHHHTTCEEEEEEECSCSTTTCSSCEEEECS--
T ss_pred cCCccc---cCcccchHHHHHHhCCeEEEEEe--eccCCccccCccccccCCCceEEEEeeCCCCeecCCccccccCC--
Confidence 222111 11234589999999999999998 5677762 322 57999999999999999876532100
Q ss_pred eeeecCCCCCCcceeeecccCCcceeeecccCHHHHHHHHHHHHHHHhcCCCCEEEEeCCCcccccchhHHHHHHHHHHH
Q 016961 231 KMVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEE 310 (380)
Q Consensus 231 e~~~~~~~g~~~~~~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk~~Vt~v~KaNVLk~tdglf~~i~~eVa~~ 310 (380)
.| ++.+.++++||++++|||+|+||+||++|+++||+|||+|||+. +|+|+++|+||++
T Consensus 193 -------~~------------~~~a~~~~~~Tr~~~eRIar~AFe~A~~rrkkVT~v~KaNVlk~-sglf~~~~~eva~- 251 (405)
T 3r8w_A 193 -------NG------------EEVGFNTEVYAAHEIDRIARVAFETARKRRGKLCSVDKANVLEA-SILWRKRVTALAS- 251 (405)
T ss_dssp -------SS------------CEEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCHH-HHHHHHHHHHHGG-
T ss_pred -------CC------------ceEEEEEEEecHHHHHHHHHHHHHHHHHcCCeEEEEECchhhcc-ccHHHHHHHHHHh-
Confidence 01 11245778899999999999999999999999999999999985 5999999999987
Q ss_pred hhhcccCCCCeeEehhhHHHHHHHHHHCCCCc-EEEeCCchhhHHHhhhhhccCCccccCCCCCCCCC
Q 016961 311 RWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPN 377 (380)
Q Consensus 311 eY~~~~~~p~I~~e~~lIDa~a~~LVk~P~~F-ViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~p~ 377 (380)
|| |+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+ ||+|++|+
T Consensus 252 eY------PdV~~~~~~VD~~amqLV~~P~~FDViVt~NlfGDILSD~aA~l~GslGl~-pSanig~~ 312 (405)
T 3r8w_A 252 EY------PDVELSHMYVDNAAMQLVRDPKQFDTIVTNNIFGDILSDEASMITGSIGML-PSASLSDS 312 (405)
T ss_dssp GS------TTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHSCGGGC-EEEEECSS
T ss_pred HC------CCCeEEeeeHHHHHHHHHhChhhCcEEeecchhhHHHHHHHHHhcCccccc-ceeeecCC
Confidence 89 999999999999999999999999 99999999999999999999999999 78999886
No 24
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A*
Probab=100.00 E-value=2.8e-76 Score=599.75 Aligned_cols=273 Identities=17% Similarity=0.109 Sum_probs=227.0
Q ss_pred ccEEEEcCCccHHHHHHHHHHHHhcC-------CCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCc
Q 016961 86 NPIVEMDGDEMTRIIWQMIKDKLIFP-------YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDE 158 (380)
Q Consensus 86 ~~IvvlpGDgIGpEV~~~~~~~l~~~-------g~~i~~~~~d~G~~~~d~tG~~lp~etleaik~~da~lkGa~~tP~~ 158 (380)
.+|++|||||||||||++++++|.+. +++|+|+++++|+++|++||+++|++|+++|+++|++||||++||.+
T Consensus 36 ~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~etl~~~k~~da~LkGav~tP~~ 115 (435)
T 1tyo_A 36 PVVAFIRGDGVGPEVVESALKVVDAAVKKVYGGSRRIVWWELLAGHLAREKCGELLPKATLEGIRLARVALKGPLETPVG 115 (435)
T ss_dssp BEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCCSHHHHHHHSSSSCHHHHHHHHHHSEEEECCCCCCTT
T ss_pred CEEEEECCCCcCHHHHHHHHHHHHHHHHhhcCCCcceEEEEEechHHHHHhhCCcCCHHHHHHHHhCCeEEECCccCCCc
Confidence 46999999999999999999988543 38999999999999999999999999999999999999999999953
Q ss_pred chhhhhcccccCCCCchhHhhhcCCeEEeeecccCCCCCCCCCC----CCCEEEEeeccCccccccceeecCCCceeeee
Q 016961 159 TRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGW----KKPICIGRHAFGDQYRATDTVIKGPGKLKMVF 234 (380)
Q Consensus 159 ~~~~~~~L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~~~~----~~divIvREnteG~Y~g~e~~~~~~g~~e~~~ 234 (380)
++|+|+|++||++||||+|+|||++ + ++.+++ +.|||||||||||+|+|.++.. +.+..+.++
T Consensus 116 ---------~~~~s~~l~LRk~LdlyanlRPv~~--~-gv~splk~~~~vDivIvREnTeg~Y~G~e~~~-~~~~~~~v~ 182 (435)
T 1tyo_A 116 ---------TGYRSLNVAIRQALDLYANIRPVRY--Y-GQPAPHKYADRVDMVIFRENTEDVYAGIEWPH-DSPEAARIR 182 (435)
T ss_dssp ---------SCTTHHHHHHHHHHTCCEEEEEEEC--C-SCCCSBTTGGGCEEEEEEECSSSGGGCCEECT-TSHHHHHHH
T ss_pred ---------ccccChhHHHHHHcCCEEEeEEEEe--c-CCCCCCCCcCCCcEEEEecCCCCeeccccccc-CCcccccee
Confidence 4689999999999999999999854 4 544433 5899999999999999998642 111100000
Q ss_pred cCCCCCCcceeeecccCCcceeeecccCHHHHHHHHHHHHHHHhcC-CCCEEEEeCCCcccccchhHHHHHHHHHHHhhh
Q 016961 235 DPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSK-KWPLYLSTKNTILKKYDGRFKDIFQQVYEERWR 313 (380)
Q Consensus 235 ~~~~g~~~~~~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~r-k~~Vt~v~KaNVLk~tdglf~~i~~eVa~~eY~ 313 (380)
... ..+. .+.++++.+.++++||+++++||+|+||+||++| +++||+|||+||||.|+|+|+++|+|||++||.
T Consensus 183 ~~~----~~~~-~~~~~~~~a~~~~~~T~~~~eRIar~AFe~A~~r~rkkVT~v~KaNVlk~tdGlf~~~~~eva~~eyp 257 (435)
T 1tyo_A 183 RFL----AEEF-GISIREDAGIGVKPISRFATRRLMERALEWALRNGNTVVTIMHKGNIMKYTEGAFMRWAYEVALEKFR 257 (435)
T ss_dssp HHH----HHHH-CCCCCTTEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEEECTTTSTTTHHHHHHHHHHHHHHHSG
T ss_pred ccc----hhhc-cccCCCCeEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhhHHHHHHHHHHHHHhCC
Confidence 000 0000 0122344566789999999999999999999998 577999999999999999999999999976893
Q ss_pred cc-c-------------CCCCeeEehhhHHHHHHHHHHCCCCc-EEEeCCchhhHHHhhhhhccCCccccCCCCCCCCC
Q 016961 314 QK-F-------------EEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPN 377 (380)
Q Consensus 314 ~~-~-------------~~p~I~~e~~lIDa~a~~LVk~P~~F-ViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~p~ 377 (380)
++ | ++.+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+ ||+|++|+
T Consensus 258 d~~~~e~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~aA~l~GslGla-pSanig~~ 335 (435)
T 1tyo_A 258 EHVVTEQEVQEKYGGVRPEGKILVNDRIADNMLQQIITRPWDYQVIVAPNLNGDYISDAASALVGGIGMA-AGMNMGDG 335 (435)
T ss_dssp GGEEEHHHHHHHSTTCCCTTCEEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCGGGC-EEEEECSS
T ss_pred CcccccccccccccccccCCeEEEEeeeHHHHHHHHhhCCCCceEEEEcccchHHHHHHHHhhcCCcccC-ceeeECCC
Confidence 20 1 11129999999999999999999999 99999999999999999999999999 78999986
No 25
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A
Probab=100.00 E-value=1.2e-76 Score=590.10 Aligned_cols=252 Identities=16% Similarity=0.114 Sum_probs=221.1
Q ss_pred ccEEEEcCCccHHHHHHHHHHHHhcC----CCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcchh
Q 016961 86 NPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRM 161 (380)
Q Consensus 86 ~~IvvlpGDgIGpEV~~~~~~~l~~~----g~~i~~~~~d~G~~~~d~tG~~lp~etleaik~~da~lkGa~~tP~~~~~ 161 (380)
++|++||||||||||+++++++|.+. +++|+|+++++|+++|++||+++|++++++|+++|++||||+++|..+.+
T Consensus 7 ~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gavg~P~~~~~ 86 (361)
T 3udu_A 7 YKVAVLAGDGIGPLVMKEALKILTFIAQKYNFSFELNEAKIGGASIDAYGVALSDETLKLCEQSDAILFGSVGGPKWDNL 86 (361)
T ss_dssp EEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCEEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGGGTTS
T ss_pred eeEEEECCCccCHHHHHHHHHHHHHHHHhcCCCEEEEEEeccHHHHHhhCCcCCHHHHHHHHHCCcEEECCcCCCCcCCC
Confidence 68999999999999999999988543 79999999999999999999999999999999999999999999953211
Q ss_pred hhhcccccCCCCchhHhhhcCCeEEeeecccCCCCCCC--CC-------CCCCEEEEeeccCccccccceeecCCCceee
Q 016961 162 KEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIV--PG-------WKKPICIGRHAFGDQYRATDTVIKGPGKLKM 232 (380)
Q Consensus 162 ~~~~L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~--~~-------~~~divIvREnteG~Y~g~e~~~~~~g~~e~ 232 (380)
+. + ...|+++|++|||+||||+|+||| +.+|++. ++ .+.|||||||||||+|+|.++.. +
T Consensus 87 ~~-~-~~~~~~~~l~LRk~ldLyaNvRP~--~~~pg~~~~splk~~~~~~~vD~vivREnTeG~Y~g~~~~~--~----- 155 (361)
T 3udu_A 87 PI-D-QRPERASLLPLRKHFNLFANLRPC--KIYESLTHASPLKNEIIQKGVDILCVRELTGGIYFGKQDLG--K----- 155 (361)
T ss_dssp CG-G-GSHHHHHHHHHHHHHTCCEEEEEE--ECCGGGGGGSSBCHHHHTTCCEEEEEEECSSGGGTSCEEEC--S-----
T ss_pred CC-C-cCccccchHHHHHHcCCEEEEEEe--eccCCccccCCCccccccCCCcEEEEcccCCCeecCccCCc--C-----
Confidence 11 1 122334589999999999999998 5667653 22 25799999999999999975431 0
Q ss_pred eecCCCCCCcceeeecccCCcceeeecccCHHHHHHHHHHHHHHHhcCCCCEEEEeCCCcccccchhHHHHHHHHHHHhh
Q 016961 233 VFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERW 312 (380)
Q Consensus 233 ~~~~~~g~~~~~~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk~~Vt~v~KaNVLk~tdglf~~i~~eVa~~eY 312 (380)
+.+.++++|||+++|||+|+||+||++|+++||+|||+|||+ ++|+|+++|+|||+ +|
T Consensus 156 --------------------~~a~~~~~~Tr~~~eRIar~AFe~A~~rrkkVT~v~KaNvl~-t~glf~~~~~eva~-ey 213 (361)
T 3udu_A 156 --------------------ESAYDTEIYTKKEIERIARIAFESARIRKKKVHLIDKANVLA-SSILWREVVANVAK-DY 213 (361)
T ss_dssp --------------------SEEEEEEEEEHHHHHHHHHHHHHHHHHTTSEEEEEECTTTCH-HHHHHHHHHHHHGG-GC
T ss_pred --------------------ceEEEEEeccHHHHHHHHHHHHHHHHHcCCcEEEEECchhhc-cchHHHHHHHHHHH-HC
Confidence 123456779999999999999999999999999999999997 89999999999998 89
Q ss_pred hcccCCCCeeEehhhHHHHHHHHHHCCCCc-EEEeCCchhhHHHhhhhhccCCccccCCCCCCCCC
Q 016961 313 RQKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPN 377 (380)
Q Consensus 313 ~~~~~~p~I~~e~~lIDa~a~~LVk~P~~F-ViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~p~ 377 (380)
|+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+ ||+|++|+
T Consensus 214 ------pdV~~~~~~VD~~am~lv~~P~~FDViVt~NlfGDILSD~aa~l~GslGl~-pSanig~~ 272 (361)
T 3udu_A 214 ------QDINLEYMYVDNAAMQIVKNPSIFDVMLCSNLFGDILSDELAAINGSLGLL-SSASLNDK 272 (361)
T ss_dssp ------TTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHCCGGGC-EEEEECTT
T ss_pred ------CCCeEEeeeHHHHHHHHHhCcccCcEEEecchhHHHHHHHHHHhcCchhhc-ceeeeCCC
Confidence 999999999999999999999999 99999999999999999999999999 67999985
No 26
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Probab=100.00 E-value=2e-76 Score=589.48 Aligned_cols=250 Identities=14% Similarity=0.061 Sum_probs=221.2
Q ss_pred cEEEEcCCccHHHHHHHHHHHHhcC----CCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcchhh
Q 016961 87 PIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMK 162 (380)
Q Consensus 87 ~IvvlpGDgIGpEV~~~~~~~l~~~----g~~i~~~~~d~G~~~~d~tG~~lp~etleaik~~da~lkGa~~tP~~~~~~ 162 (380)
+|++||||||||||+++++++|.+. +++|+|+++++|+++|++||+++|++++++|+++|++||||+++|....++
T Consensus 14 ~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~L~Gavg~P~~~~~~ 93 (366)
T 1vlc_A 14 KIAVLPGDGIGPEVVREALKVLEVVEKKTGKTFEKVFGHIGGDAIDRFGEPLPEETKKICLEADAIFLGSVGGPKWDDLP 93 (366)
T ss_dssp EEEEEEESTHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCTHHHHHHHSSSSCHHHHHHHHHSSEEEEEECCCGGGTTSC
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCccccCC
Confidence 7999999999999999999988765 899999999999999999999999999999999999999999999643211
Q ss_pred hhcccccCCCCchhHhhhcCCeEEeeecccCCCCCCC--CCC-------CCCEEEEeeccCccccccceeecCCCceeee
Q 016961 163 EFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIV--PGW-------KKPICIGRHAFGDQYRATDTVIKGPGKLKMV 233 (380)
Q Consensus 163 ~~~L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~--~~~-------~~divIvREnteG~Y~g~e~~~~~~g~~e~~ 233 (380)
.++. ..+++|++|||+||||+|+||| +.+|++. +++ +.|||||||||||+|+|.++... +
T Consensus 94 -~~~r-~~~~~~l~LRk~ldlyaN~RP~--~~~pgl~~~splk~~~~~~~vDivIvREnteG~Y~g~~~~~~-~------ 162 (366)
T 1vlc_A 94 -PEKR-PEIGGLLALRKMLNLYANIRPI--KVYRSLVHVSPLKEKVIGSGVDLVTVRELSYGVYYGQPRGLD-E------ 162 (366)
T ss_dssp -STTS-HHHHTHHHHHHHTTCCEEEEEE--ECCGGGGGGSSSCHHHHTTCCEEEEEEECSSGGGTEEEEEEC-S------
T ss_pred -cccC-cccchhHHHHHHhCCEEEEEEc--cccCCCCCcCCCcccccCCCceEEEEEeCCCCeecCCccccC-C------
Confidence 1110 1123589999999999999998 5577765 344 37999999999999999876431 1
Q ss_pred ecCCCCCCcceeeecccCCcceeeecccCHHHHHHHHHHHHHHHhcCCCCEEEEeCCCcccccchhHHHHHHHHHHHhhh
Q 016961 234 FDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWR 313 (380)
Q Consensus 234 ~~~~~g~~~~~~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk~~Vt~v~KaNVLk~tdglf~~i~~eVa~~eY~ 313 (380)
+.+.++++||+++++||+|+||+||++|+++||+|||+|||| ++|+|+++|+|||+ +|
T Consensus 163 -------------------~~a~~~~~~Tr~~~eRIar~AFe~A~~rrkkVt~v~KaNvlk-t~glf~~~~~eva~-ey- 220 (366)
T 1vlc_A 163 -------------------EKGFDTMIYDRKTVERIARTAFEIAKNRRKKVTSVDKANVLY-SSMLWRKVVNEVAR-EY- 220 (366)
T ss_dssp -------------------SCEEEECCCCHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHHHT-TC-
T ss_pred -------------------CeEEEEEEEcHHHHHHHHHHHHHHHHHcCCeEEEEECCcccc-cchHHHHHHHHHHH-HC-
Confidence 124567789999999999999999999988999999999999 99999999999998 89
Q ss_pred cccCCCCeeEehhhHHHHHHHHHHCCCCc-EEEeCCchhhHHHhhhhhccCCccccCCCCCCC
Q 016961 314 QKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRA 375 (380)
Q Consensus 314 ~~~~~p~I~~e~~lIDa~a~~LVk~P~~F-ViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~ 375 (380)
|+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+ ||+|++
T Consensus 221 -----pdV~~~~~~VD~~~mqlv~~P~~FDVivt~NlfGDILSD~aa~l~GslGl~-pSanig 277 (366)
T 1vlc_A 221 -----PDVELTHIYVDNAAMQLILKPSQFDVILTTNMFGDILSDESAALPGSLGLL-PSASFG 277 (366)
T ss_dssp -----TTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHTTSSSCGGGC-EEEEES
T ss_pred -----CCceEEeeeHHHHHHHHhhCcccceEEEEcchhHHHHHHHHHHhcCccccc-cEeeeC
Confidence 999999999999999999999999 99999999999999999999999999 688887
No 27
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1
Probab=100.00 E-value=9.7e-76 Score=579.35 Aligned_cols=241 Identities=17% Similarity=0.154 Sum_probs=221.0
Q ss_pred ccEEEEcCCccHHHHHHHHHHHHhcC----CCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcchh
Q 016961 86 NPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRM 161 (380)
Q Consensus 86 ~~IvvlpGDgIGpEV~~~~~~~l~~~----g~~i~~~~~d~G~~~~d~tG~~lp~etleaik~~da~lkGa~~tP~~~~~ 161 (380)
++|++||||||||||+++++++|.+. +++|+|+++++|+++|++||+++|+|++++|+++|++||||++||..
T Consensus 2 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~t~~~~~~~da~l~Gav~tP~~--- 78 (336)
T 1wpw_A 2 FTVALIQGDGIGPEIVSKSKRILAKINELYSLPIEYIEVEAGDRALARYGEALPKDSLKIIDKADIILKGPVGESAA--- 78 (336)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHHHHHHHHTTCCEEEEEECCSHHHHHHSSSSSCHHHHHHHHTCSEEEECCCCTTHH---
T ss_pred cEEEEECCCCcCHHHHHHHHHHHHHHHHhhCCCeEEEEEecchHHHHhhCCcCCHHHHHHHHHCCEEEECCcCCCCc---
Confidence 57999999999999999999988665 89999999999999999999999999999999999999999999942
Q ss_pred hhhcccccCCCCchhHhhhcCCeEEeeecccCCCCCCCCCCC-CCEEEEeeccCccccccceeecCCCceeeeecCCCCC
Q 016961 162 KEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWK-KPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGT 240 (380)
Q Consensus 162 ~~~~L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~~~~~-~divIvREnteG~Y~g~e~~~~~~g~~e~~~~~~~g~ 240 (380)
. +|++|||+||||+|+||| +.+|++.++++ .|++||||||||+|+|.++... ++
T Consensus 79 ---------~-~~l~lR~~ldlyan~RP~--~~~pg~~~~~~~~D~vivREnteg~Y~g~~~~~~-~~------------ 133 (336)
T 1wpw_A 79 ---------D-VVVKLRQIYDMYANIRPA--KSIPGIDTKYGNVDILIVRENTEDLYKGFEHIVS-DG------------ 133 (336)
T ss_dssp ---------H-HHHHHHHTTTCCEEEEEE--ECCTTTCCSCSCCEEEEEEECSSBTTTCCEEEEE-TT------------
T ss_pred ---------c-hHHHHHHHhCCEEEEEEE--eccCCCCCCCCCCcEEEEecCccCeEcCCccccC-CC------------
Confidence 1 688999999999999998 67888877774 8999999999999999876431 11
Q ss_pred CcceeeecccCCcceeeecccCHHHHHHHHHHHHHHHhcCCCCEEEEeCCCcccccchhHHHHHHHHHHHhhhcccCCCC
Q 016961 241 GPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHS 320 (380)
Q Consensus 241 ~~~~~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk~~Vt~v~KaNVLk~tdglf~~i~~eVa~~eY~~~~~~p~ 320 (380)
.+.++++||+++++||+|+||+||++|+++||+|||+||||.+||+|+++|+|||+ + +
T Consensus 134 -------------va~~~~~~T~~~~eRiar~AF~~A~~rrkkvt~v~KaNvlk~t~glf~~~~~eva~-~--------~ 191 (336)
T 1wpw_A 134 -------------VAVGMKIITRFASERIAKVGLNFALRRRKKVTCVHKANVMRITDGLFAEACRSVLK-G--------K 191 (336)
T ss_dssp -------------EEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCTTHHHHHHHHHHHHHT-T--------T
T ss_pred -------------eEEEEEEecHHHHHHHHHHHHHHHHHhCCeEEEEECCcchhhhhHHHHHHHHHHHH-h--------C
Confidence 23466779999999999999999999988999999999999999999999999987 2 7
Q ss_pred eeEehhhHHHHHHHHHHCCCCc-EEEeCCchhhHHHhhhhhccCCccccCCCCCCCCC
Q 016961 321 IWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPN 377 (380)
Q Consensus 321 I~~e~~lIDa~a~~LVk~P~~F-ViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~p~ 377 (380)
|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+ ||+|++|+
T Consensus 192 I~~~~~~vD~~~~~lv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~-pSanig~~ 248 (336)
T 1wpw_A 192 VEYSEMYVDAAAANLVRNPQMFDVIVTENVYGDILSDEASQIAGSLGIA-PSANIGDK 248 (336)
T ss_dssp SEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGC-EEEEECSS
T ss_pred ceeEEEeHHHHHHHHhhCcccceEEEEcCcchHHHHHHHHHhcCCcccc-ceEEECCC
Confidence 9999999999999999999999 99999999999999999999999999 78999986
No 28
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1
Probab=100.00 E-value=1.5e-75 Score=582.58 Aligned_cols=255 Identities=20% Similarity=0.150 Sum_probs=220.0
Q ss_pred ccEEEEcCCccHHHHHHHHHHHHhcC----CCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcchh
Q 016961 86 NPIVEMDGDEMTRIIWQMIKDKLIFP----YLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRM 161 (380)
Q Consensus 86 ~~IvvlpGDgIGpEV~~~~~~~l~~~----g~~i~~~~~d~G~~~~d~tG~~lp~etleaik~~da~lkGa~~tP~~~~~ 161 (380)
++|++||||||||||+++++++|.+. +++|+|+++++|+++|++||+++|++++++|+++|++||||+++|....+
T Consensus 2 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~l~Gavg~p~~~~~ 81 (358)
T 1a05_A 2 KKIAIFAGDGIGPEIVAAARQVLDAVDQAAHLGLRCTEGLVGGAALDASDDPLPAASLQLAMAADAVILGAVGGPRWDAY 81 (358)
T ss_dssp CEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCCEEEECCCHHHHHHHHSSSSCHHHHHHHHHCSEEEEEECCCGGGTTS
T ss_pred cEEEEECCCCcCHHHHHHHHHHHHHHHHhcCCceEEEEEeCCcHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCCcccC
Confidence 58999999999999999999988654 79999999999999999999999999999999999999999999963222
Q ss_pred hhhcccccCCCCchhHhhhcCCeEEeeecccCCCCCCC--CCC------CCCEEEEeeccCccccccceeecCCCceeee
Q 016961 162 KEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIV--PGW------KKPICIGRHAFGDQYRATDTVIKGPGKLKMV 233 (380)
Q Consensus 162 ~~~~L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~--~~~------~~divIvREnteG~Y~g~e~~~~~~g~~e~~ 233 (380)
+. ++ ..+++ |++|||+||||+|+||| +.+|++. +++ +.|||||||||||+|+|.++....
T Consensus 82 ~~-~~-~~e~~-ll~lRk~ldlyanvRP~--~~~pgl~~~splk~~~~~~vDivIvREnteg~Y~g~~~~~~~------- 149 (358)
T 1a05_A 82 PP-AK-RPEQG-LLRLRKGLDLYANLRPA--QIFPQLLDASPLRPELVRDVDILVVRELTGDIYFGQPRGLEV------- 149 (358)
T ss_dssp CG-GG-SHHHH-HHHHHHHHTCCEEEEEE--ECCTTSGGGCSBCHHHHTTCEEEEEEECSSSTTTCSSCEEEE-------
T ss_pred Cc-cc-cchhh-HHHHHHHcCCEEEEEEE--EecCCccCCCCCccccCCCceEEEEEecCCCcccCCcCcccc-------
Confidence 11 11 12334 78999999999999998 5677763 222 379999999999999997532100
Q ss_pred ecCCCCCCcceeeecccCCcceeeecccCHHHHHHHHHHHHHHHhcCCCCEEEEeCCCcccccchhHHHHHHHHHHHhhh
Q 016961 234 FDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWR 313 (380)
Q Consensus 234 ~~~~~g~~~~~~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk~~Vt~v~KaNVLk~tdglf~~i~~eVa~~eY~ 313 (380)
..+ ++.+.++++||++++|||+|+||+||++|+++||+|||+|||| ++|+|+++|+|||+ +|
T Consensus 150 ---~~~------------~~~a~~~~~~T~~~~eRiar~AFe~A~~rrkkVt~v~KaNvlk-~~~lf~~~~~eva~-ey- 211 (358)
T 1a05_A 150 ---IDG------------KRRGFNTMVYDEDEIRRIAHVAFRAAQGRRKQLCSVDKANVLE-TTRLWREVVTEVAR-DY- 211 (358)
T ss_dssp ---ETT------------EEEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHHGG-GC-
T ss_pred ---CCC------------CceEEEEEEEcHHHHHHHHHHHHHHHHhcCCeEEEEECCcccc-cchhHHHHHHHHHH-HC-
Confidence 000 0124477889999999999999999999988999999999999 89999999999997 89
Q ss_pred cccCCCCeeEehhhHHHHHHHHHHCCCCc-EEEeCCchhhHHHhhhhhccCCccccCCCCCCCC
Q 016961 314 QKFEEHSIWYEHRLIDDMVAYAIKSEGGY-VWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAP 376 (380)
Q Consensus 314 ~~~~~p~I~~e~~lIDa~a~~LVk~P~~F-ViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~p 376 (380)
|+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+ ||+|++.
T Consensus 212 -----pdI~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~-pSanig~ 269 (358)
T 1a05_A 212 -----PDVRLSHMYVDNAAMQLIRAPAQFDVLLTGNMFGDILSDEASQLTGSIGML-PSASLGE 269 (358)
T ss_dssp -----TTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHTTSCGGGC-EEEEECS
T ss_pred -----CCceEEeeeHHHHHHHHHhCCCcccEEEecCcccHhHHHHHHhhcCCcccc-ceeeeCC
Confidence 999999999999999999999999 99999999999999999999999999 6788873
No 29
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} PDB: 3mbc_A*
Probab=67.78 E-value=6.3 Score=41.57 Aligned_cols=115 Identities=16% Similarity=0.230 Sum_probs=72.7
Q ss_pred eccCcccccccee--ecCCCceeeeecCCCCCCcceeee-cccCCcceeeecccCHHHHHHHHHHHHHHHhcCCCCEEEE
Q 016961 211 HAFGDQYRATDTV--IKGPGKLKMVFDPEDGTGPVELDV-YNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLS 287 (380)
Q Consensus 211 EnteG~Y~g~e~~--~~~~g~~e~~~~~~~g~~~~~~~v-~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk~~Vt~v 287 (380)
+-.+|-|++.|.. +...+.+++.|.+.+|...+ ++- .......+.+.++++.+.-.-+.....+-|++.+ -+.++
T Consensus 173 ~M~~gDFy~~EkS~t~~~a~~~~ie~~~~~G~~~v-LK~~~~l~~gEviDat~Ms~~aL~~F~~~qi~~Ak~~g-vLfSl 250 (738)
T 2b0t_A 173 TMDANDFRHNEKSIILDAADEVQIKHIAADGTETI-LKDSLKLLEGEVLDGTVLSAKALDAFLLEQVARAKAEG-ILFSA 250 (738)
T ss_dssp CCSSSSHHHHCEEEECSSCEEEEEEEECSSCCEEE-EEEEEEECTTCEEEEEEECHHHHHHHHHHHHHHHHHHT-CEEEE
T ss_pred eccCCCccCcceeEEecCCCeEEEEEEcCCCcEEE-ecCCCcccCCcEeehhhhcHHHHHHHHHHHHHHHHHcC-ceeeh
Confidence 3444444444433 24456666778777774322 221 2223456778899999999999999999997766 44444
Q ss_pred -eCCCcccccchh-H---HHH-HHHHHHHhhhcccCCCCeeEehhhH
Q 016961 288 -TKNTILKKYDGR-F---KDI-FQQVYEERWRQKFEEHSIWYEHRLI 328 (380)
Q Consensus 288 -~KaNVLk~tdgl-f---~~i-~~eVa~~eY~~~~~~p~I~~e~~lI 328 (380)
-|++-||-+|-. | -++ |.++.+ +|.+.|++-+|....=+-
T Consensus 251 HlKATMMKVSDPIiFGhaV~vf~kdvF~-k~~~~~~~lGvn~nnGlg 296 (738)
T 2b0t_A 251 HLKATMMKVSDPIIFGHVVRAYFADVFA-QYGEQLLAAGLNGENGLA 296 (738)
T ss_dssp CBCTTTSTTHHHHHHHHHHHHHTHHHHH-HHHHHHHHTTCSSTTHHH
T ss_pred hhhhccccccCcccccchhhhhhHHHHH-HHHHHHHHcCCCcccCHH
Confidence 499999988865 3 233 455665 676667666666554433
No 30
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB: 1j1w_A*
Probab=66.07 E-value=6.2 Score=41.62 Aligned_cols=112 Identities=17% Similarity=0.252 Sum_probs=71.8
Q ss_pred eccCcccccccee--ecCCCceeeeecCCCCCCcceeee-cccCCcceeeecccCHHHHHHHHHHHHHHHhcCCCCEEEE
Q 016961 211 HAFGDQYRATDTV--IKGPGKLKMVFDPEDGTGPVELDV-YNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLS 287 (380)
Q Consensus 211 EnteG~Y~g~e~~--~~~~g~~e~~~~~~~g~~~~~~~v-~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk~~Vt~v 287 (380)
+-.+|-|++.|.. +...+.+++.|.+.+|...+ ++- .......+.+.++++.+.-.-+.....+-|++.+ -+.++
T Consensus 175 ~M~~gDFy~~EkS~t~~~a~~~~ie~~~~~G~~~v-LK~~~~l~~gEviDat~Ms~~aL~~F~~~qi~~Ak~~g-vLfSl 252 (741)
T 1itw_A 175 HMDNGDFYGSEKAALIGAPGSVKIELIAKDGSSTV-LKAKTSVQAGEIIDSSVMSKNALRNFIAAEIEDAKKQG-VLLSV 252 (741)
T ss_dssp CCSSSSHHHHCEEEECCSSEEEEEEEEETTSCEEE-EEEEEEECTTCEEEEEEECHHHHHHHHHHHHHHHHHHT-CEEEE
T ss_pred eccCCCccCcceeEEecCCCeEEEEEEcCCCcEEE-ecCCCcccCCcEeehhhhcHHHHHHHHHHHHHHHHHcC-ceeeh
Confidence 3444444444433 24455666677777764322 221 2223456778899999999999999999997766 44444
Q ss_pred -eCCCcccccchh-H---HHH-HHHHHHHhhhcccCCCCeeEeh
Q 016961 288 -TKNTILKKYDGR-F---KDI-FQQVYEERWRQKFEEHSIWYEH 325 (380)
Q Consensus 288 -~KaNVLk~tdgl-f---~~i-~~eVa~~eY~~~~~~p~I~~e~ 325 (380)
-|++-||-+|-. | -++ |.++.+ +|.+.|++-+|....
T Consensus 253 HlKATMMKVSDPIiFGhaV~vf~kdvF~-k~~~~~~~lGvn~nn 295 (741)
T 1itw_A 253 HLKATMMKVSDPIMFGQIVSEFYKDALT-KHAEVLKQIGFDVNN 295 (741)
T ss_dssp CBCTTTSTTHHHHHHHHHHHHHTHHHHH-HTHHHHHHTTCCGGG
T ss_pred hhhhccccccCcccccchhhhhhHHHHH-HHHHHHHHcCCCccc
Confidence 499999988865 3 233 556666 677777767776553
No 31
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A*
Probab=62.79 E-value=1.4 Score=44.76 Aligned_cols=16 Identities=6% Similarity=-0.232 Sum_probs=14.9
Q ss_pred CCCEEEEeeccCcccc
Q 016961 203 KKPICIGRHAFGDQYR 218 (380)
Q Consensus 203 ~~divIvREnteG~Y~ 218 (380)
..|++|+||||||+|+
T Consensus 156 ~~D~vivREnteg~Y~ 171 (427)
T 2qfy_A 156 ATDTLIPGPGSLELVY 171 (427)
T ss_dssp CEEEEECSSEEEEEEE
T ss_pred CeeEEEeccCccceee
Confidence 4799999999999998
No 32
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural GE PSI; 2.01A {Pseudomonas aeruginosa}
Probab=33.10 E-value=25 Score=34.42 Aligned_cols=20 Identities=5% Similarity=0.074 Sum_probs=16.4
Q ss_pred cccEEEEcCC--ccHHHHHHHH
Q 016961 85 QNPIVEMDGD--EMTRIIWQMI 104 (380)
Q Consensus 85 ~~~IvvlpGD--gIGpEV~~~~ 104 (380)
+..|++-.|| ||||||+-.+
T Consensus 2 ~~~iaIT~GDpaGIGpEii~ka 23 (328)
T 1yxo_A 2 SLRFALTPGEPAGIGPDLCLLL 23 (328)
T ss_dssp CCCEEEECCSTTSSHHHHHHHH
T ss_pred CCEEEEcCCCCcchhHHHHHHH
Confidence 3459999999 9999987654
No 33
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=29.66 E-value=1.5e+02 Score=26.05 Aligned_cols=84 Identities=13% Similarity=0.176 Sum_probs=50.3
Q ss_pred ccccEEEEcCC----ccHHHHHHHHHHHHhcCCCCeEEEEEecch-HHHhh-cCCCCcHHH---HHHHHhcCeeeecCCC
Q 016961 84 VQNPIVEMDGD----EMTRIIWQMIKDKLIFPYLDLDIKYYDLGI-LNRDA-TDDKVTVES---AEATLKYNVAIKCATI 154 (380)
Q Consensus 84 ~~~~IvvlpGD----gIGpEV~~~~~~~l~~~g~~i~~~~~d~G~-~~~d~-tG~~lp~et---leaik~~da~lkGa~~ 154 (380)
|.++|++|-|- -.++.+.+.+.+.+ ..+ ++++.+|+.. ..|+. .....|+++ .+.++++|+++.+
T Consensus 1 M~k~I~vi~GS~R~~S~~~~la~~~~~~~-~~~--~~~~~idl~dLP~~~~d~~~~~p~~~~~l~~~i~~aD~~ii~--- 74 (190)
T 3u7r_A 1 MVKTVAVMVGSLRKDSLNHKLMKVLQKLA-EGR--LEFHLLHIGDLPHYNDDLWADAPESVLRLKDRIEHSDAVLAI--- 74 (190)
T ss_dssp -CEEEEEEESCCSTTCHHHHHHHHHHHHH-TTT--EEEEECCGGGSCCCCGGGGGGCCHHHHHHHHHHHTSSEEEEE---
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHhc-cCC--CEEEEEecccCCCCCCCcccCCCHHHHHHHHHHHhCCcEEEe---
Confidence 45678999885 67777777766533 334 5555566643 11111 111246554 4788899999865
Q ss_pred CCCcchhhhhcccccCCCCchhHhhhcCCe
Q 016961 155 TPDETRMKEFGLKSMWRSPNGTIRNILNGT 184 (380)
Q Consensus 155 tP~~~~~~~~~L~~~~~spn~~LRk~ldly 184 (380)
||.. ..|.-+.|.+.+|..
T Consensus 75 tPeY-----------n~s~pg~LKn~iDwl 93 (190)
T 3u7r_A 75 TPEY-----------NRSYPGMIKNAIDWA 93 (190)
T ss_dssp CCCB-----------TTBCCHHHHHHHHHH
T ss_pred chhh-----------cccCCHHHHHHHHHh
Confidence 4542 234557899999953
No 34
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=25.67 E-value=1.4e+02 Score=23.65 Aligned_cols=56 Identities=9% Similarity=0.038 Sum_probs=40.9
Q ss_pred ccEEEEcCCccHHHHH-HHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCC
Q 016961 86 NPIVEMDGDEMTRIIW-QMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATI 154 (380)
Q Consensus 86 ~~IvvlpGDgIGpEV~-~~~~~~l~~~g~~i~~~~~d~G~~~~d~tG~~lp~etleaik~~da~lkGa~~ 154 (380)
.+|.+.=|-||+--++ +.+++.+.+.|++++.+..+++. +.+ .+.++|+++.||-.
T Consensus 4 kkIll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i~a~~~~~---------~~~----~~~~~Dvil~~pqv 60 (106)
T 1e2b_A 4 KHIYLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETL---------AGE----KGQNADVVLLGPQI 60 (106)
T ss_dssp EEEEEECSSSTTTHHHHHHHHHHHHHSCCSEEEEEECSSS---------TTH----HHHHCSEEEECTTS
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHHCCCCeEEEEecHHH---------HHh----hccCCCEEEEccch
Confidence 4699999999998765 34445556679999988888764 222 35679999988853
No 35
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural GENO PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium}
Probab=25.66 E-value=41 Score=32.86 Aligned_cols=19 Identities=16% Similarity=0.032 Sum_probs=16.0
Q ss_pred cEEEEcCC--ccHHHHHHHHH
Q 016961 87 PIVEMDGD--EMTRIIWQMIK 105 (380)
Q Consensus 87 ~IvvlpGD--gIGpEV~~~~~ 105 (380)
||++-.|| ||||||+-.+.
T Consensus 8 ~iaIT~GDpaGIGpEii~ka~ 28 (330)
T 2hi1_A 8 TVAITMGDPAGIGPEIIVKAL 28 (330)
T ss_dssp CEEEECCCTTTTHHHHHHHHH
T ss_pred CEEEcCCCCcchhHHHHHHHH
Confidence 49999999 99999876553
No 36
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A
Probab=24.17 E-value=35 Score=33.37 Aligned_cols=79 Identities=9% Similarity=-0.070 Sum_probs=42.9
Q ss_pred ccCHHHHHHHHHHHHHHHhcC-C--C-CEEEEeCCCcccccchhH--------HHHHHHHHHHhhhcccCCCCeeEe-hh
Q 016961 260 YNVDESIRAFAESSMSLAFSK-K--W-PLYLSTKNTILKKYDGRF--------KDIFQQVYEERWRQKFEEHSIWYE-HR 326 (380)
Q Consensus 260 ~~Tr~~ieRIar~AFe~A~~r-k--~-~Vt~v~KaNVLk~tdglf--------~~i~~eVa~~eY~~~~~~p~I~~e-~~ 326 (380)
.+|.+.+.+.++.+.+--+++ + + ++.++- =|==.--.|+| .-.+++..+ .++.++ .+
T Consensus 179 ~it~e~i~~~i~~~~~~l~~~fGi~~PrIAV~g-LNPHAGE~G~~G~EE~~iI~PAi~~lr~---------~Gi~~~GP~ 248 (334)
T 3lxy_A 179 AITQASLHEVITILDNDLKTKFGITQPQIYVCG-LNPHAGEGGHMGHEEIDTIIPALNTLRQ---------QGINLIGPL 248 (334)
T ss_dssp HCCHHHHHHHHHHHHHHHHHTSCCSSCCEEEEC-SSGGGGGGGTTCSHHHHTHHHHHHHHHH---------TTCCEEEEE
T ss_pred hCCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEe-cCCCCCCCCCCCchhHHHHHHHHHHHHH---------CCCceeCCC
Confidence 369999999999887765542 2 2 465552 11111112333 233333322 255444 55
Q ss_pred hHHHHHHHHHHCCCCc-EEEeCCch
Q 016961 327 LIDDMVAYAIKSEGGY-VWACKNYD 350 (380)
Q Consensus 327 lIDa~a~~LVk~P~~F-ViVt~NLf 350 (380)
--|.+-.+-.+ ++| ++||.+.+
T Consensus 249 paDt~F~~~~~--~~~D~vlaMYHD 271 (334)
T 3lxy_A 249 PADTLFQPKYL--QHADAVLAMYHD 271 (334)
T ss_dssp CHHHHTSHHHH--TTCSEEEESSHH
T ss_pred ChHHhcChhhh--ccCCEEEEcccc
Confidence 66766555444 678 88887654
No 37
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=23.57 E-value=95 Score=25.38 Aligned_cols=26 Identities=12% Similarity=0.132 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEe
Q 016961 263 DESIRAFAESSMSLAFSKKWPLYLST 288 (380)
Q Consensus 263 r~~ieRIar~AFe~A~~rk~~Vt~v~ 288 (380)
.+.+++.+++|.++|...+.+|+++|
T Consensus 35 s~~s~~al~~A~~la~~~~a~l~llh 60 (155)
T 3dlo_A 35 SDRAERVLRFAAEEARLRGVPVYVVH 60 (155)
T ss_dssp SHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 35688999999999998888888877
No 38
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=22.83 E-value=2.8e+02 Score=24.14 Aligned_cols=84 Identities=18% Similarity=0.137 Sum_probs=53.4
Q ss_pred ccEEEEcCC----ccHHHHHHHHHH----HHhcCCCCeEEEEEecchHHH---hhcCCCC-cH---HHHHHHHhcCeeee
Q 016961 86 NPIVEMDGD----EMTRIIWQMIKD----KLIFPYLDLDIKYYDLGILNR---DATDDKV-TV---ESAEATLKYNVAIK 150 (380)
Q Consensus 86 ~~IvvlpGD----gIGpEV~~~~~~----~l~~~g~~i~~~~~d~G~~~~---d~tG~~l-p~---etleaik~~da~lk 150 (380)
.+|++|-|- +.+..+.+.+.+ .+.+.+..++.+.+|++.... +...... ++ +.++.++++|++++
T Consensus 12 ~~il~i~GS~r~~S~t~~La~~~~~~~~~~l~~~~~g~eve~idL~d~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~ivi 91 (191)
T 3k1y_A 12 RTLAVISAGLSTPSSTRQIADSISEAVTAAVSARGEALSVSTIELSELIPDLMTAMTTRVHTTKLEEITSALSASDGLVV 91 (191)
T ss_dssp EEEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCHHHHTTTTSSSCCCHHHHHHHHHHHHCSEEEE
T ss_pred ceEEEEECCCCCCCHHHHHHHHHHHHhHHHHHhcCCCceEEEEEHHhCCCcccChhhcCCCCHHHHHHHHHHHHCCEEEE
Confidence 478888775 778888877776 454454456777777776432 2111122 33 45688899999997
Q ss_pred cCCCCCCcchhhhhcccccCCCCchhHhhhcCC
Q 016961 151 CATITPDETRMKEFGLKSMWRSPNGTIRNILNG 183 (380)
Q Consensus 151 Ga~~tP~~~~~~~~~L~~~~~spn~~LRk~ldl 183 (380)
+. |. -|.++...|..-+|.
T Consensus 92 ~s---P~-----------Y~~~~~~~lK~~iD~ 110 (191)
T 3k1y_A 92 AT---PV-----------FKASYTGLFKMFFDI 110 (191)
T ss_dssp EE---EC-----------BTTBSCHHHHHHHHH
T ss_pred Ec---Cc-----------cCCcCcHHHHHHHHH
Confidence 73 32 144556778888884
No 39
>4aty_A Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; oxidoreductase; 1.85A {Burkholderia xenovorans LB400}
Probab=22.16 E-value=54 Score=31.91 Aligned_cols=19 Identities=16% Similarity=0.013 Sum_probs=15.9
Q ss_pred cEEEEcCC--ccHHHHHHHHH
Q 016961 87 PIVEMDGD--EMTRIIWQMIK 105 (380)
Q Consensus 87 ~IvvlpGD--gIGpEV~~~~~ 105 (380)
+|++-.|| ||||||+=.+.
T Consensus 10 kIaIT~GDPaGIGpEIilKa~ 30 (349)
T 4aty_A 10 TVALAIGDPNGIGPEIAVKAA 30 (349)
T ss_dssp CEEEECCCTTSSHHHHHHHHH
T ss_pred eEEEECCCcchhHHHHHHHHH
Confidence 69999999 99999975443
No 40
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} PDB: 3mbc_A*
Probab=20.77 E-value=4.3e+02 Score=28.06 Aligned_cols=98 Identities=13% Similarity=0.149 Sum_probs=63.6
Q ss_pred ceeeecccCHHHHHHHHHHHHHHHhcCCCC-EEEEeCCCcccccchhHHHHHHHHHHHhhhcccCCCCeeEehh-hHHHH
Q 016961 254 GIALAMYNVDESIRAFAESSMSLAFSKKWP-LYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHR-LIDDM 331 (380)
Q Consensus 254 ~~~~~~~~Tr~~ieRIar~AFe~A~~rk~~-Vt~v~KaNVLk~tdglf~~i~~eVa~~eY~~~~~~p~I~~e~~-lIDa~ 331 (380)
+++-.+---+.-|+.+++.|.+.|+..+.+ |.-.|+.-. .| .+....| + +|-...+..++.++-+ -+++|
T Consensus 450 DIwRmcq~KDapI~DWVkLAV~Rar~sg~pavFWLD~~Ra---HD---a~lI~kV-~-~yL~~hdt~GLdi~Im~p~~A~ 521 (738)
T 2b0t_A 450 DIWRACQVKDAPIQDWVKLAVTRSRLSGMPAVFWLDPERA---HD---RNLASLV-E-KYLADHDTEGLDIQILSPVEAT 521 (738)
T ss_dssp CEEEEEEECHHHHHHHHHHHHHHHHHHCCCEEEECCTTCH---HH---HHHHHHH-H-HHHTTSCCTTCCEEEECHHHHH
T ss_pred cchhhhhccCchHHHHHHHHHHHHHhcCCCeEEeeCCCCc---cH---HHHHHHH-H-HHHHhcCCCCCceEeeCHHHHH
Confidence 344334446888999999999999998877 555554322 23 2455555 3 5655455455555544 46665
Q ss_pred HHHH--HHCCCCcEEEeCCchhhHHHhhhh
Q 016961 332 VAYA--IKSEGGYVWACKNYDGDVQSDLLA 359 (380)
Q Consensus 332 a~~L--Vk~P~~FViVt~NLfGDILSDlaA 359 (380)
-.-| +++=+.-+=||.|..=|.|+||.-
T Consensus 522 ~~slerir~G~dTISVTGNVLRDYLTDLFP 551 (738)
T 2b0t_A 522 QLSIDRIRRGEDTISVTGNVLRDYNTDLFP 551 (738)
T ss_dssp HHHHHHHHTTCCCEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCeEEeechhhhhhccccch
Confidence 5444 334444488999999999999986
Done!