Query 016965
Match_columns 379
No_of_seqs 300 out of 1207
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 06:43:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016965.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016965hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cg7_A CRN-4, cell death-relat 100.0 1.2E-39 4E-44 318.5 23.2 203 119-328 9-220 (308)
2 1w0h_A 3'-5' exonuclease ERI1; 100.0 3E-38 1E-42 288.0 22.5 190 135-325 9-203 (204)
3 2xri_A ERI1 exoribonuclease 3; 100.0 4.6E-38 1.6E-42 293.0 22.7 186 135-324 30-221 (224)
4 1zbh_A 3'-5' exonuclease ERI1; 100.0 8.1E-37 2.8E-41 296.8 24.1 215 136-353 78-297 (299)
5 1zbu_A ERI-1 homolog, 3'-5' ex 100.0 4.6E-36 1.6E-40 298.0 22.3 216 135-353 127-347 (349)
6 2p1j_A POLIII, DNA polymerase 100.0 6.9E-35 2.4E-39 263.9 17.7 176 124-321 5-180 (186)
7 2gui_A DNA polymerase III epsi 100.0 1.9E-34 6.6E-39 261.5 18.1 171 137-318 10-186 (194)
8 3mxm_B Three prime repair exon 100.0 1.2E-34 4.1E-39 273.8 13.0 172 136-317 12-215 (242)
9 3u3y_B Three prime repair exon 100.0 7.6E-33 2.6E-37 271.1 13.2 173 136-317 12-215 (314)
10 2f96_A Ribonuclease T; RNAse, 100.0 8.9E-32 3E-36 249.9 16.5 178 136-319 29-215 (224)
11 1y97_A Three prime repair exon 100.0 4.4E-31 1.5E-35 246.6 16.9 174 136-319 10-212 (238)
12 3v9w_A Ribonuclease T; DEDD nu 100.0 1.2E-30 4E-35 243.8 16.3 179 136-320 37-224 (235)
13 2igi_A Oligoribonuclease; RNAs 100.0 1.8E-29 6.2E-34 226.2 11.0 165 135-318 4-178 (180)
14 1wlj_A Interferon stimulated g 100.0 2.2E-29 7.6E-34 228.5 7.1 157 136-318 5-170 (189)
15 2qxf_A Exodeoxyribonuclease I; 99.9 5.8E-28 2E-32 248.8 14.6 168 136-317 9-201 (482)
16 2gbz_A Oligoribonuclease; ORN, 99.9 5.5E-28 1.9E-32 220.3 10.7 163 136-318 9-182 (194)
17 3tr8_A Oligoribonuclease; tran 99.9 6.2E-28 2.1E-32 220.2 9.5 160 135-318 8-182 (186)
18 2kfn_A Klenow fragment of DNA 98.8 4.9E-08 1.7E-12 102.9 15.8 147 136-319 26-195 (605)
19 4gmj_B CCR4-NOT transcription 98.8 1.7E-07 5.7E-12 90.5 17.0 173 136-319 34-247 (285)
20 4hec_A Putative uncharacterize 98.8 2.9E-08 1E-12 90.5 11.1 153 137-315 23-180 (190)
21 1x9m_A DNA polymerase; DNA plo 98.5 3.4E-07 1.2E-11 98.1 10.2 141 138-320 1-186 (698)
22 2d5r_A CCR4-NOT transcription 98.4 1.3E-05 4.5E-10 76.0 17.9 174 136-319 24-237 (252)
23 1uoc_A POP2; hydrolase, DEDD n 98.3 1.5E-05 5.1E-10 77.0 16.7 173 136-317 38-265 (289)
24 2p51_A SPCC18.06C protein; DED 98.3 2.1E-05 7.3E-10 77.2 16.7 172 136-317 45-256 (333)
25 1qht_A Protein (DNA polymerase 98.2 3.5E-05 1.2E-09 83.5 16.7 153 136-315 135-328 (775)
26 3f2b_A DNA-directed DNA polyme 97.9 2.8E-06 9.6E-11 94.3 1.7 67 44-125 129-195 (1041)
27 3iay_A DNA polymerase delta ca 97.6 0.0014 4.8E-08 72.3 17.5 157 137-313 250-465 (919)
28 3d45_A Poly(A)-specific ribonu 97.5 0.0011 3.8E-08 68.5 14.2 85 230-318 277-393 (507)
29 1noy_A Protein (DNA polymerase 97.5 0.0024 8.3E-08 63.5 16.0 166 137-313 107-335 (388)
30 1s5j_A DNA polymerase I; repli 97.5 0.0006 2E-08 74.6 12.2 155 137-310 191-386 (847)
31 2hnh_A DNA polymerase III alph 97.3 5.5E-05 1.9E-09 83.3 1.6 54 44-105 19-72 (910)
32 4dfk_A DNA polymerase I, therm 97.2 0.001 3.6E-08 69.2 10.1 118 137-317 11-128 (540)
33 2gv9_A DNA polymerase; polymer 97.2 0.0081 2.8E-07 68.0 17.7 169 137-313 321-550 (1193)
34 3o0f_A Putative metal-dependen 96.8 0.00036 1.2E-08 67.7 1.8 53 44-104 25-77 (301)
35 2hpi_A DNA polymerase III alph 96.7 0.0004 1.4E-08 78.4 1.4 54 44-105 20-75 (1220)
36 2yb1_A Amidohydrolase; HET: AM 96.3 0.0014 4.7E-08 62.7 2.1 53 45-105 15-67 (292)
37 3qex_A DNA polymerase, GP43; d 96.0 0.11 3.8E-06 57.1 15.9 167 136-312 108-337 (903)
38 3k59_A POL II, DNA polymerase 95.5 0.27 9.3E-06 53.3 16.1 150 137-313 154-349 (786)
39 3e38_A Two-domain protein cont 94.1 0.008 2.8E-07 59.1 -0.3 62 44-105 31-96 (343)
40 3pv8_A DNA polymerase I; DNA p 93.7 0.094 3.2E-06 55.1 6.8 134 137-319 30-183 (592)
41 3saf_A Exosome component 10; e 93.5 0.48 1.6E-05 47.8 11.5 135 136-319 129-279 (428)
42 2a1r_A Poly(A)-specific ribonu 93.2 0.25 8.5E-06 49.9 8.7 104 202-317 262-397 (430)
43 2py5_A DNA polymerase; protein 91.1 0.45 1.5E-05 49.7 7.9 133 136-317 6-184 (575)
44 2yxo_A Histidinol phosphatase; 90.6 0.078 2.7E-06 48.6 1.4 61 45-105 14-83 (267)
45 1m65_A Hypothetical protein YC 88.9 0.16 5.5E-06 46.0 2.2 53 46-105 17-76 (245)
46 3b0x_A DNA polymerase beta fam 86.6 0.2 6.7E-06 52.3 1.4 61 45-105 350-416 (575)
47 1vk0_A Hypothetical protein; h 82.9 2.4 8.1E-05 38.4 6.7 90 214-315 97-205 (206)
48 2w9m_A Polymerase X; SAXS, DNA 82.5 0.47 1.6E-05 49.5 2.0 61 45-105 340-404 (578)
49 1yt3_A Ribonuclease D, RNAse D 82.1 8.5 0.00029 37.4 10.8 92 215-319 64-172 (375)
50 2e6m_A Werner syndrome ATP-dep 76.1 7.1 0.00024 34.4 7.5 93 215-319 86-197 (208)
51 2anu_A Hypothetical protein TM 72.7 0.47 1.6E-05 43.7 -1.3 26 45-70 33-58 (255)
52 2hbj_A Exosome complex exonucl 72.7 16 0.00053 36.3 9.7 93 215-320 149-257 (410)
53 3cym_A Uncharacterized protein 62.6 28 0.00095 34.9 9.2 90 214-319 84-189 (440)
54 3dcp_A Histidinol-phosphatase; 51.0 1.9 6.4E-05 40.8 -1.7 26 47-72 18-43 (283)
55 2a1r_A Poly(A)-specific ribonu 44.7 40 0.0014 33.7 6.9 49 136-184 22-95 (430)
56 1v77_A PH1877P, hypothetical p 38.4 8.9 0.0003 34.4 0.9 24 45-70 13-36 (212)
57 2wje_A CPS4B, tyrosine-protein 26.9 19 0.00066 32.5 1.1 54 51-105 28-87 (247)
No 1
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=100.00 E-value=1.2e-39 Score=318.50 Aligned_cols=203 Identities=28% Similarity=0.468 Sum_probs=174.1
Q ss_pred cccCCCCCCCCCCCCCcccEEEEEEeeCCCCCCCCCCCcEEEEceEEEEcCCCeEEe--EEEEeecCCCCCCCCcchhhh
Q 016965 119 YNMLTPAHPYDFQPQEFQYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEA--CFQTYVRPTCNQLLSDFCKDL 196 (379)
Q Consensus 119 ~~~~~~~~~l~~~~q~~~~fVV~D~ETTGl~g~~~~~deIIEIGAV~vd~~~g~i~d--~F~~~VkP~~~~~Ls~~~~~L 196 (379)
..|.+.+.++ ++|||||+||||++.......+|||||||++|.++|++++ +|+++|||...+.|+++++++
T Consensus 9 ~~m~~~~~~~-------~~~vviD~ETTGl~~~~d~~~eIIEIgaV~vd~~~g~i~~~~~f~~lV~P~~~p~i~~~~~~l 81 (308)
T 3cg7_A 9 TRMAYQHCPF-------DTLLILDFETTSDAANQDYPCEVIQFAIVAYDVPNDKIREDISFNKYVKPVLNRTLTKNCVDF 81 (308)
T ss_dssp ----CCCCCC-------SEEEEEEEEECCBTTBCSCCCCEEEEEEEEEETTTTEEEEEEEEEEECBCSSBCSCCHHHHHH
T ss_pred hhcccccCCC-------CeEEEEEeecCCCCCCCCCCCCeEEEEEEEEEcCCCEEeeccceeeEECCCCCCCCCHHHHHH
Confidence 3455555554 5899999999998421111249999999999977899988 999999999634599999999
Q ss_pred cCCChHHHhCCCCHHHHHHHHHHHHhhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcCC
Q 016965 197 TGIQQIQVDRGVTLSEALLRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGG 276 (379)
Q Consensus 197 TGIT~~~V~~Ap~~~eVl~ef~~fl~~~~Lv~hn~iVVh~~~FDlr~fL~~~~~~~gi~~P~~~~~~iDt~~l~r~l~~~ 276 (379)
||||++||++||+|.+|+++|.+|+++..+++||+++|+|++||++.||+++|++.|+.+|..+++|+||+.+++.+++.
T Consensus 82 tGIt~e~v~~ap~~~evl~~f~~~l~~~~lvahn~~lv~~g~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~ 161 (308)
T 3cg7_A 82 TGIPQRSIDTADTFDVVYEQFQQWLITLGLEEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPAFFRQYINLYKIFTNEMDR 161 (308)
T ss_dssp HCCCHHHHHTSCBHHHHHHHHHHHHHHHCCCTTSEEEEESSSHHHHTHHHHHHHHTTCCCCGGGSEEEEHHHHHHHHHHH
T ss_pred cCCCHHHHhcCCCHHHHHHHHHHHHHhCCcCCcceEEeccCcccHHHHHHHHHHHcCCCCchhhcceeeHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999646999999999999886667899999999887753
Q ss_pred -C------CCCHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCcccccccc
Q 016965 277 -V------RCNLKEAVEMAGLAWQGRAHCGLDDAKNTARLLALLMHRGFKFSITNSLMW 328 (379)
Q Consensus 277 -~------~~rL~~l~~~~gI~~~g~~HrAL~DA~aTA~Ll~~ll~~~~~~~i~~~l~~ 328 (379)
. +++|.+++++||++.++++|||++||++||+||.+|++++..+++++.+..
T Consensus 162 ~~~~~~~~~~~L~~l~~~~gi~~~~~~HrAl~DA~ata~l~~~l~~~~~~~~i~~~~~~ 220 (308)
T 3cg7_A 162 MGPKELSATTNIGKMNEYYDLPTIGRAHDAMDDCLNIATILQRMINMGAKVTVNELLTC 220 (308)
T ss_dssp HCCCCCCCCSHHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTTCCCCCCEEEES
T ss_pred ccccccccCcCHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHHHHcCCCCChHHHHhh
Confidence 1 568999999999999877899999999999999999999988888887754
No 2
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=100.00 E-value=3e-38 Score=288.03 Aligned_cols=190 Identities=36% Similarity=0.743 Sum_probs=166.6
Q ss_pred cccEEEEEEeeCCCCCCC-CCCCcEEEEceEEEEcCCCeEEeEEEEeecCCCCCCCCcchhhhcCCChHHHhCCCCHHHH
Q 016965 135 FQYFVVIDFEATCDKDKN-PYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEA 213 (379)
Q Consensus 135 ~~~fVV~D~ETTGl~g~~-~~~deIIEIGAV~vd~~~g~i~d~F~~~VkP~~~~~Ls~~~~~LTGIT~~~V~~Ap~~~eV 213 (379)
...|||||+||||++... +..++|||||||+++.++|+++++|+++|||..++.++++++++||||++||++||++.+|
T Consensus 9 ~~~~vviD~ETTGl~~~~~~~~~~Iieigav~~~~~~g~i~~~f~~lv~P~~~~~i~~~~~~i~GIt~~~l~~~~~~~~v 88 (204)
T 1w0h_A 9 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQV 88 (204)
T ss_dssp SSEEEECCCEECCCTTCCTTSCCCEEEEEEEEEETTTCSEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBCHHHH
T ss_pred cCEEEEEEEecCCcCCCCCCCCCcEEEEEEEEEECCCCEEeeeeeeEECCCCCCccCHHHHHHhCCCHHHHhCCCCHHHH
Confidence 468999999999984211 2579999999999986689999999999999964469999999999999999999999999
Q ss_pred HHHHHHHHhhcCC-CCccEEEEEcCcchHHH-HHHHHHHHcCCCCCCCCCceeehHHHHHHhcCC--CCCCHHHHHHHcC
Q 016965 214 LLRHDKWLENKGI-KNTNFAVVTWSNWDCRV-MLESECRFKKIWKPPYFNRWINLKVPFHEVFGG--VRCNLKEAVEMAG 289 (379)
Q Consensus 214 l~ef~~fl~~~~L-v~hn~iVVh~~~FDlr~-fL~~~~~~~gi~~P~~~~~~iDt~~l~r~l~~~--~~~rL~~l~~~~g 289 (379)
+++|.+|+++.++ ....++|+||+.||+ . ||+++|++.|+..|.+..+|+|++.+++.+++. .+++|++++++||
T Consensus 89 ~~~~~~~l~~~~~~~~~~~lv~hn~~fD~-~~~L~~~~~~~~~~~p~~~~~~~dt~~l~~~~~~~~~~~~~L~~l~~~~g 167 (204)
T 1w0h_A 89 LKKVIDWMKLKELGTKYKYSLLTDGSWDM-SKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLG 167 (204)
T ss_dssp HHHHHHHHHHTTBTTTBCEEEEESSTTTT-HHHHHHHHHHHTCCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCCCCcEEEEEECcchH-HHHHHHHHHHhCCCCcccccceEEHHHHHHHHhCCCCccchHHHHHHHcC
Confidence 9999999998752 233467889999996 6 999999999998875555899999999988875 3589999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCccccc
Q 016965 290 LAWQGRAHCGLDDAKNTARLLALLMHRGFKFSITNS 325 (379)
Q Consensus 290 I~~~g~~HrAL~DA~aTA~Ll~~ll~~~~~~~i~~~ 325 (379)
++..+++|||++||++||+||.+|++++..+.+++.
T Consensus 168 i~~~~~~H~Al~Da~~ta~l~~~l~~~~~~~~i~~~ 203 (204)
T 1w0h_A 168 MDYDGRPHCGLDDSKNIARIAVRMLQDGCELRINEK 203 (204)
T ss_dssp CCCCSCTTCHHHHHHHHHHHHHHHHHTTCCCCCCEE
T ss_pred CCCCCCccCcHHHHHHHHHHHHHHHHCCCeeeecCc
Confidence 998767899999999999999999999999998875
No 3
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=100.00 E-value=4.6e-38 Score=293.04 Aligned_cols=186 Identities=39% Similarity=0.717 Sum_probs=161.4
Q ss_pred cccEEEEEEeeCCCCCCCCCC--CcEEEEceEEEEcCCCeEEeEEEEeecCCCCCCCCcchhhhcCCChHHHhCCCCHHH
Q 016965 135 FQYFVVIDFEATCDKDKNPYP--QEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSE 212 (379)
Q Consensus 135 ~~~fVV~D~ETTGl~g~~~~~--deIIEIGAV~vd~~~g~i~d~F~~~VkP~~~~~Ls~~~~~LTGIT~~~V~~Ap~~~e 212 (379)
+.+|||||+||||+ ++.. ++|||||||+++..+|+++++|+++|||...+.|+++++++||||++||++||++.+
T Consensus 30 ~~~~vviD~ETTGl---~~~~d~~~IieIgav~v~~~~~~i~~~f~~lV~P~~~~~i~~~~~~ltGIt~~~v~~a~~~~~ 106 (224)
T 2xri_A 30 YHYFLVLDFEATCD---KPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQ 106 (224)
T ss_dssp CSEEEEECCEECCC---C-CCSSCCEEEEEEEEEETTTCCEEEEEEEECCCSSSCSCCHHHHHHHCCCHHHHTTCCCHHH
T ss_pred CCeEEEEEEEcCCC---CCCCCCcceEEEEEEEEecCCcEEeeeeeeEECCCCCCcCCHHHHHHhCcCHHHHcCCCCHHH
Confidence 35899999999998 3444 499999999998555799999999999996556999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCccE--EEEEcCcchHHHH-HHHHHHHcCCCCCCCCCceeehHHHHHHhcCC-CCCCHHHHHHHc
Q 016965 213 ALLRHDKWLENKGIKNTNF--AVVTWSNWDCRVM-LESECRFKKIWKPPYFNRWINLKVPFHEVFGG-VRCNLKEAVEMA 288 (379)
Q Consensus 213 Vl~ef~~fl~~~~Lv~hn~--iVVh~~~FDlr~f-L~~~~~~~gi~~P~~~~~~iDt~~l~r~l~~~-~~~rL~~l~~~~ 288 (379)
|+++|.+|+++.++++||+ ++++|+.||+ .| |+++|++.|++.|....+|+|++..++...+. ..++|.+++++|
T Consensus 107 v~~~f~~~l~~~~lv~hn~~~~~~t~g~fD~-~fll~~~~~~~g~~~p~~~~~~iD~~~~~~~~~~~~p~~~L~~l~~~~ 185 (224)
T 2xri_A 107 VLERVDEWMAKEGLLDPNVKSIFVTCGDWDL-KVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGL 185 (224)
T ss_dssp HHHHHHHHHHHTTTTSTTSCEEEEESSSHHH-HTHHHHHHHHHTCCCCGGGSCEEEHHHHHHHHHTSCCTTTHHHHHHHT
T ss_pred HHHHHHHHHhhcccccCCCceEEEEeChhhH-HHHHHHHHHHhCCCCcccccceEeHHHHHHHHhccCCCCCHHHHHHHc
Confidence 9999999999999999975 8999999996 76 88999999998875556899976555443332 347999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCcccc
Q 016965 289 GLAWQGRAHCGLDDAKNTARLLALLMHRGFKFSITN 324 (379)
Q Consensus 289 gI~~~g~~HrAL~DA~aTA~Ll~~ll~~~~~~~i~~ 324 (379)
|++.++++|||++||++||+||.+|++++..+.+|.
T Consensus 186 gi~~~~~~H~Al~DA~~ta~l~~~l~~~g~~~~it~ 221 (224)
T 2xri_A 186 SLQHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQTS 221 (224)
T ss_dssp TCCCCSCTTCHHHHHHHHHHHHHHHHHTTCCCCCCS
T ss_pred CCCCCCCCcChHHHHHHHHHHHHHHHHcCCEEeecC
Confidence 999877789999999999999999999998887764
No 4
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=100.00 E-value=8.1e-37 Score=296.77 Aligned_cols=215 Identities=33% Similarity=0.624 Sum_probs=179.1
Q ss_pred ccEEEEEEeeCCCCCC-CCCCCcEEEEceEEEEcCCCeEEeEEEEeecCCCCCCCCcchhhhcCCChHHHhCCCCHHHHH
Q 016965 136 QYFVVIDFEATCDKDK-NPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEAL 214 (379)
Q Consensus 136 ~~fVV~D~ETTGl~g~-~~~~deIIEIGAV~vd~~~g~i~d~F~~~VkP~~~~~Ls~~~~~LTGIT~~~V~~Ap~~~eVl 214 (379)
+.|||||+||||+++. ++..++|||||||+++..+|+++++|+++|+|..++.|+++++++||||++||++||+|.+|+
T Consensus 78 ~~~vviD~ETTGl~~~~~~~~~~IIeIgaV~v~~~~g~i~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~v~~ap~~~evl 157 (299)
T 1zbh_A 78 DYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVL 157 (299)
T ss_dssp SEEEEECCEECCCTTCCTTCCCCEEEEEEEEEETTTCCEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBCHHHHH
T ss_pred ceEEEEEeecccCCCCCCCCCCceEEEEEEEEECCCCeEeeeeeeeecCCCCCCCCHHHHHHhCCCHHHHhcCCCHHHHH
Confidence 5899999999999532 256899999999999865789999999999999654699999999999999999999999999
Q ss_pred HHHHHHHhhcCCC-CccEEEEEcCcchHHH-HHHHHHHHcCCCCCCCCCceeehHHHHHHhcCCCC--CCHHHHHHHcCC
Q 016965 215 LRHDKWLENKGIK-NTNFAVVTWSNWDCRV-MLESECRFKKIWKPPYFNRWINLKVPFHEVFGGVR--CNLKEAVEMAGL 290 (379)
Q Consensus 215 ~ef~~fl~~~~Lv-~hn~iVVh~~~FDlr~-fL~~~~~~~gi~~P~~~~~~iDt~~l~r~l~~~~~--~rL~~l~~~~gI 290 (379)
++|.+|+++..+. ...++|+||+.||+ . ||+.+|++.|+..|.+..+|+|++.+++.+++..+ ++|.+++++||+
T Consensus 158 ~~f~~~l~~~~~~~~~~~lVahn~~fD~-~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~~gi 236 (299)
T 1zbh_A 158 KKVIDLMKLKELGTKYKYSLLTDGSWDM-SKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGM 236 (299)
T ss_dssp HHHHHHHHHTTBTTTBCEEEEESSSHHH-HTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHHHHTTC
T ss_pred HHHHHHHhhcccCCCCcEEEEEeCHHHH-HHHHHHHHHHcCCCCCcccchHHHHHHHHHHHhCCCCCCccHHHHHHHcCC
Confidence 9999999985321 12468899999995 8 99999999999887655689999999998877544 899999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCCCCCCCcccccc
Q 016965 291 AWQGRAHCGLDDAKNTARLLALLMHRGFKFSITNSLMWQTNDGSLTWNQFPERIFLPPHQLHK 353 (379)
Q Consensus 291 ~~~g~~HrAL~DA~aTA~Ll~~ll~~~~~~~i~~~l~~~~~~~~~~~~~~P~~~~~~~~~~~~ 353 (379)
+.++++|+|++||++||+||.+|++++..+.+++.+..... .-+-...|-...++++.|+.
T Consensus 237 ~~~g~~H~Al~DA~ata~l~~~l~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~ 297 (299)
T 1zbh_A 237 DYDGRPNCGLDDSKNIARIAVRMLQDGCELRINEKMHAGQL--MSVSSSLPIEGTPPPQMPHF 297 (299)
T ss_dssp CCCSCTTCHHHHHHHHHHHHHHHHHTTCCCCCCEEEETTEE--EECCSSSCCCCCCCCCCCCB
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhCCcCChhhhhhcCcc--ccccccccccCCCCCCCCCC
Confidence 99777899999999999999999999988888877653221 12344556666666666653
No 5
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=100.00 E-value=4.6e-36 Score=298.01 Aligned_cols=216 Identities=34% Similarity=0.637 Sum_probs=179.0
Q ss_pred cccEEEEEEeeCCCCCC-CCCCCcEEEEceEEEEcCCCeEEeEEEEeecCCCCCCCCcchhhhcCCChHHHhCCCCHHHH
Q 016965 135 FQYFVVIDFEATCDKDK-NPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEA 213 (379)
Q Consensus 135 ~~~fVV~D~ETTGl~g~-~~~~deIIEIGAV~vd~~~g~i~d~F~~~VkP~~~~~Ls~~~~~LTGIT~~~V~~Ap~~~eV 213 (379)
...|||||+||||+++. ++..++|||||||+++..+|+++++|+++|+|..++.|+++++++||||++||++||+|.+|
T Consensus 127 ~~~~vviD~ETTGl~~~~~~~~deIIEIgaV~vd~~~g~i~~~f~~lVkP~~~~~I~~~~t~ihGIT~e~v~~ap~~~eV 206 (349)
T 1zbu_A 127 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQV 206 (349)
T ss_dssp CSEEEECCCEECCCTTCCTTCCCCEEECCEEEEETTTTEEEEEECCBEECSSSCSCCHHHHHHHCCCHHHHHTSEEHHHH
T ss_pred CCeEEEEEEecCCCCCcCCCCCCeEEEEEEEEEECCCceEeEEEEEEECCCCCCCCCHHHHHHhCCCHHHHhCCCCHHHH
Confidence 36999999999999431 35679999999999986678999999999999965469999999999999999999999999
Q ss_pred HHHHHHHHhhcCCC-CccEEEEEcCcchHHH-HHHHHHHHcCCCCCCCCCceeehHHHHHHhcCCCC--CCHHHHHHHcC
Q 016965 214 LLRHDKWLENKGIK-NTNFAVVTWSNWDCRV-MLESECRFKKIWKPPYFNRWINLKVPFHEVFGGVR--CNLKEAVEMAG 289 (379)
Q Consensus 214 l~ef~~fl~~~~Lv-~hn~iVVh~~~FDlr~-fL~~~~~~~gi~~P~~~~~~iDt~~l~r~l~~~~~--~rL~~l~~~~g 289 (379)
+.+|.+|+++..+. ...++|+||+.||+ . ||+.+|++.|+..|.+..+|+|++.+++.+++..+ ++|.+++++||
T Consensus 207 l~~f~~~l~~~~~~~~~~~lVaHNa~FD~-~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~~g 285 (349)
T 1zbu_A 207 LKKVIDLMKLKELGTKYKYSLLTDGSWDM-SKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLG 285 (349)
T ss_dssp HHHHHHHHHHTTBTTTBCEEEEESSSHHH-HTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGGSHHHHHHHTT
T ss_pred HHHHHHHHhcccccCCCcEEEEECcHhhH-HHHHHHHHHHhCCCCccccchHHHHHHHHHHHhcCCCCCCCHHHHHHHcC
Confidence 99999999985221 12478899999995 8 99999999999887655689999999998877544 89999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCCCCCCCcccccc
Q 016965 290 LAWQGRAHCGLDDAKNTARLLALLMHRGFKFSITNSLMWQTNDGSLTWNQFPERIFLPPHQLHK 353 (379)
Q Consensus 290 I~~~g~~HrAL~DA~aTA~Ll~~ll~~~~~~~i~~~l~~~~~~~~~~~~~~P~~~~~~~~~~~~ 353 (379)
++.++++|+|++||++||+||.+|++++..+.+++.+..... .-+-...|-...++++.|+.
T Consensus 286 i~~~g~~HrAl~DA~ata~ll~~ll~~~~~~~i~ell~~~~~--~~~~~~~~~~~~~~~~~~~~ 347 (349)
T 1zbu_A 286 MDYDGRPHCGLDDSKNIARIAVRMLQDGCELRINEKMHAGQL--MSVSSSLPIEGTPPPQMPHF 347 (349)
T ss_dssp CCCCSCTTCHHHHHHHHHHHHHHHHHTTCCCCCCEEEETTEE--EECCTTSCCCCCCCCCCCCB
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHhhccc--cccCcccccCCCCCCCCCCC
Confidence 998777899999999999999999999988888877654221 12344455555555666553
No 6
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=100.00 E-value=6.9e-35 Score=263.89 Aligned_cols=176 Identities=26% Similarity=0.282 Sum_probs=148.2
Q ss_pred CCCCCCCCCCCcccEEEEEEeeCCCCCCCCCCCcEEEEceEEEEcCCCeEEeEEEEeecCCCCCCCCcchhhhcCCChHH
Q 016965 124 PAHPYDFQPQEFQYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQ 203 (379)
Q Consensus 124 ~~~~l~~~~q~~~~fVV~D~ETTGl~g~~~~~deIIEIGAV~vd~~~g~i~d~F~~~VkP~~~~~Ls~~~~~LTGIT~~~ 203 (379)
.++|+. ..+|||||+||||+ ++..++|||||+|+++ +|+++++|+++|+|.. .++++++++||||++|
T Consensus 5 ~~~~l~-----~~~~v~iD~ETTGl---~~~~~~IieIg~v~~~--~g~i~~~f~~lv~P~~--~i~~~~~~i~GIt~~~ 72 (186)
T 2p1j_A 5 DDSTFG-----DATFVVLDFETTGL---DPQVDEIIEIGAVKIQ--GGQIVDEYHTLIKPSR--EISRKSSEITGITQEM 72 (186)
T ss_dssp -------------CEEEEEEEESCS---CTTTCCEEEEEEEEEE--TTEEEEEEEEECBCSS--CCCHHHHHHHCCCHHH
T ss_pred cCCcCc-----CCCEEEEEEECCCC---CCCCCeEEEEEEEEEE--CCEEEEEEEEEECcCC--CCCHHHhhhcCCCHHH
Confidence 455665 35899999999998 5678999999999996 8999999999999996 5999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHhhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcCCCCCCHHH
Q 016965 204 VDRGVTLSEALLRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGGVRCNLKE 283 (379)
Q Consensus 204 V~~Ap~~~eVl~ef~~fl~~~~Lv~hn~iVVh~~~FDlr~fL~~~~~~~gi~~P~~~~~~iDt~~l~r~l~~~~~~rL~~ 283 (379)
|+++|++.+|+++|.+|+++. ++|+||++||+ .||++++++.|++.| ..+++|+..+++.+++.++++|++
T Consensus 73 l~~~~~~~~v~~~~~~~l~~~------~lv~hn~~fD~-~~L~~~~~~~g~~~~--~~~~iDt~~l~~~~~~~~~~~L~~ 143 (186)
T 2p1j_A 73 LENKRSIEEVLPEFLGFLEDS------IIVAHNANFDY-RFLRLWIKKVMGLDW--ERPYIDTLALAKSLLKLRSYSLDS 143 (186)
T ss_dssp HTTCCBHHHHHHHHHHHSSSC------EEEETTHHHHH-HHHHHHHHHHHCCCC--CCCEEEHHHHHHHHTCCSCCSHHH
T ss_pred HhcCCCHHHHHHHHHHHHCCC------EEEEECcHHHH-HHHHHHHHHcCCCCC--CCCEEeHHHHHHHHhhcCCCCHHH
Confidence 999999999999999999875 45666679996 899999999998764 357899999999888667889999
Q ss_pred HHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCc
Q 016965 284 AVEMAGLAWQGRAHCGLDDAKNTARLLALLMHRGFKFS 321 (379)
Q Consensus 284 l~~~~gI~~~g~~HrAL~DA~aTA~Ll~~ll~~~~~~~ 321 (379)
++++||++.. .+|+|++||++|++||.+|++++.+.+
T Consensus 144 l~~~~gi~~~-~~H~Al~Da~~t~~l~~~l~~~~~~~~ 180 (186)
T 2p1j_A 144 VVEKLGLGPF-RHHRALDDARVTAQVFLRFVEMMKKEG 180 (186)
T ss_dssp HHHHTTCCST-TCCHHHHHHHHHHHHHHHHTTCC----
T ss_pred HHHHcCCCCC-CCcCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999986 579999999999999999998876543
No 7
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=100.00 E-value=1.9e-34 Score=261.51 Aligned_cols=171 Identities=19% Similarity=0.156 Sum_probs=146.8
Q ss_pred cEEEEEEeeCCCCCCC--CCCCcEEEEceEEEEcCCCeEE-eEEEEeecCCCCCCCCcchhhhcCCChHHHhCCCCHHHH
Q 016965 137 YFVVIDFEATCDKDKN--PYPQEIIEFPSVIVSSVTGQLE-ACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEA 213 (379)
Q Consensus 137 ~fVV~D~ETTGl~g~~--~~~deIIEIGAV~vd~~~g~i~-d~F~~~VkP~~~~~Ls~~~~~LTGIT~~~V~~Ap~~~eV 213 (379)
+|||||+||||+.... ...++|||||||+++ +|+++ ++|+++|+|.. .++++++++||||++||+++|++.+|
T Consensus 10 ~~vviD~ETTGl~~~~~~~~~~~Iieig~v~~~--~~~~~~~~f~~lv~P~~--~i~~~~~~i~GIt~~~l~~~~~~~~v 85 (194)
T 2gui_A 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVV--NRRLTGNNFHVYLKPDR--LVDPEAFGVHGIADEFLLDKPTFAEV 85 (194)
T ss_dssp EEEEEEEEESCCCSSSSTTTTCCEEEEEEEEEE--TTEECSCCEEEECCCSS--CCCHHHHHHHCCCHHHHTTSCCHHHH
T ss_pred CEEEEEeeCCCCCCcccCCCCCEEEEEEEEEEE--CCeEeccEEEEEECcCC--cCCHHHHHhhCcCHHHHhCCCCHHHH
Confidence 7999999999983210 046999999999996 78876 47999999996 59999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCC--CceeehHHHHHHhcCCCCCCHHHHHHHcCCC
Q 016965 214 LLRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYF--NRWINLKVPFHEVFGGVRCNLKEAVEMAGLA 291 (379)
Q Consensus 214 l~ef~~fl~~~~Lv~hn~iVVh~~~FDlr~fL~~~~~~~gi~~P~~~--~~~iDt~~l~r~l~~~~~~rL~~l~~~~gI~ 291 (379)
+++|.+|+++.+ +|+||+.||+ .||++++++.|+..|.+. .+++|+..+++.+++..+++|.+++++||++
T Consensus 86 ~~~~~~~l~~~~------lv~hn~~fD~-~~L~~~~~~~g~~~p~~~~~~~~iDt~~l~~~~~p~~~~~L~~l~~~~gi~ 158 (194)
T 2gui_A 86 ADEFMDYIRGAE------LVIHNAAFDI-GFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGKRNSLDALCARYEID 158 (194)
T ss_dssp HHHHHHHHTTSE------EEETTHHHHH-HHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHSTTSCCSHHHHHHHTTCC
T ss_pred HHHHHHHHCCCe------EEEEchHHhH-HHHHHHHHHcCCCCccccccCceeeHHHHHHHHcCCCCCCHHHHHHHcCcC
Confidence 999999999854 4566779995 899999999999877553 5799999999998886678999999999999
Q ss_pred CCC-CCCCHHHHHHHHHHHHHHHHHhcC
Q 016965 292 WQG-RAHCGLDDAKNTARLLALLMHRGF 318 (379)
Q Consensus 292 ~~g-~~HrAL~DA~aTA~Ll~~ll~~~~ 318 (379)
..+ .+|+|++||++|++||.+|+++..
T Consensus 159 ~~~~~~H~Al~Da~~ta~l~~~l~~~~~ 186 (194)
T 2gui_A 159 NSKRTLHGALLDAQILAEVYLAMTGGQT 186 (194)
T ss_dssp CTTCSSCCHHHHHHHHHHHHHHHTC---
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHhccc
Confidence 875 389999999999999999986543
No 8
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=100.00 E-value=1.2e-34 Score=273.83 Aligned_cols=172 Identities=13% Similarity=0.068 Sum_probs=144.2
Q ss_pred ccEEEEEEeeCCCCCCCCCCCcEEEEceEEEEcCCC------------------eEEeEEEEeecCCCCCCCCcchhhhc
Q 016965 136 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTG------------------QLEACFQTYVRPTCNQLLSDFCKDLT 197 (379)
Q Consensus 136 ~~fVV~D~ETTGl~g~~~~~deIIEIGAV~vd~~~g------------------~i~d~F~~~VkP~~~~~Ls~~~~~LT 197 (379)
.+|||||+||||+ ++..++|||||||+++. ++ +++++|+++|||.. .|+++++++|
T Consensus 12 ~~~vv~D~ETTGl---~~~~d~IiEIgav~v~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~li~P~~--~i~~~~~~i~ 85 (242)
T 3mxm_B 12 QTLIFLDLEATGL---PSSRPEVTELCLLAVHR-RALENTSISQGHPPPVPRPPRVVDKLSLCIAPGK--ACSPGASEIT 85 (242)
T ss_dssp SEEEEEEEEESSC---GGGCCCEEEEEEEEEEH-HHHHTSCCCCSSSCCCCCCCSCCEEEEEECCCSS--CCCHHHHHHH
T ss_pred ceEEEEEeecCCC---CCCCCeeEEEEEEEecC-CcccccccccccccccccccchhheeEEEECCCC--CCCHHHHHhc
Confidence 5899999999998 56789999999999972 21 67899999999996 5999999999
Q ss_pred CCChHHHhCC--CCHH-HHHHHHHHHHhhcCCCCccEEEEEcC-cchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHh
Q 016965 198 GIQQIQVDRG--VTLS-EALLRHDKWLENKGIKNTNFAVVTWS-NWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEV 273 (379)
Q Consensus 198 GIT~~~V~~A--p~~~-eVl~ef~~fl~~~~Lv~hn~iVVh~~-~FDlr~fL~~~~~~~gi~~P~~~~~~iDt~~l~r~l 273 (379)
|||++||.++ |+|+ +|+++|.+|+++.. ...++|+||+ .||+ .||+++++++|+.+|.....++|++.+++.+
T Consensus 86 GIt~~~l~~~g~p~~~~ev~~~~~~fl~~~~--~~~~lVaHNav~FD~-~fL~~~~~r~g~~~~~~~~~~iDtl~l~r~l 162 (242)
T 3mxm_B 86 GLSKAELEVQGRQRFDDNLAILLRAFLQRQP--QPCCLVAHNGDRYDF-PLLQTELARLSTPSPLDGTFCVDSIAALKAL 162 (242)
T ss_dssp CCCHHHHHHTTCCCSCHHHHHHHHHHHHTSC--SSEEEEETTTTTTHH-HHHHHHHHTSSSCCTTTTCEEEEHHHHHHHH
T ss_pred CCCHHHHHhcCCCchhHHHHHHHHHHHhcCC--CCCEEEEcCChHhhH-HHHHHHHHHcCCCCCccCCeEeehHHHHHHH
Confidence 9999999998 9996 99999999999821 1124566776 9995 9999999999987652234789998887765
Q ss_pred c----C-----CCCCCHHHHHHH-cCCCCCCCCCCHHHHHHHHHHHHHHHHHhc
Q 016965 274 F----G-----GVRCNLKEAVEM-AGLAWQGRAHCGLDDAKNTARLLALLMHRG 317 (379)
Q Consensus 274 ~----~-----~~~~rL~~l~~~-~gI~~~g~~HrAL~DA~aTA~Ll~~ll~~~ 317 (379)
+ + .++++|++++++ ||++.. ++|||++||++|++||+++.++.
T Consensus 163 ~~~~~p~~~~~~~~~~L~~l~~~~~gi~~~-~~H~Al~Da~ata~l~~~~~~~~ 215 (242)
T 3mxm_B 163 EQASSPSGNGSRKSYSLGSIYTRLYWQAPT-DSHTAEGDDLTLLSICQWKPQAL 215 (242)
T ss_dssp HHHHCC------CCCSHHHHHHHHHSSCCS-STTSHHHHHHHHHHHHTSSHHHH
T ss_pred HhhcCccccCCCCCcCHHHHHHHHhCCCCC-CCcChHHHHHHHHHHHHHHHHHH
Confidence 4 2 467899999977 999986 68999999999999999887664
No 9
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=99.98 E-value=7.6e-33 Score=271.08 Aligned_cols=173 Identities=13% Similarity=0.066 Sum_probs=142.9
Q ss_pred ccEEEEEEeeCCCCCCCCCCCcEEEEceEEEEcCC--------C---------eEEeEEEEeecCCCCCCCCcchhhhcC
Q 016965 136 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVT--------G---------QLEACFQTYVRPTCNQLLSDFCKDLTG 198 (379)
Q Consensus 136 ~~fVV~D~ETTGl~g~~~~~deIIEIGAV~vd~~~--------g---------~i~d~F~~~VkP~~~~~Ls~~~~~LTG 198 (379)
.+|||||+||||+ ++..++|||||+|+++... | +++++|+++|||.+ .|+++++++||
T Consensus 12 ~tfVv~DlETTGL---~~~~d~IIEIgaV~v~~~~l~~~~~~~g~~~~~~~~~~v~~~~~~lI~P~~--~I~~~a~~IhG 86 (314)
T 3u3y_B 12 QTLIFLDLEATGL---PSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGK--ACSPGASEITG 86 (314)
T ss_dssp SEEEEEEEEESSC---GGGCCCEEEEEEEEEEHHHHHC--CCCSSSCCCCCCCSSCEEEEEECBCSS--CCCHHHHHHHS
T ss_pred CCEEEEEEECCCC---CCCCCeEEEEEEEEEECCccccccccccccccccccceeeeeEEEEECCCC--CCCHHHHHhcC
Confidence 5899999999998 5678999999999997211 0 46799999999996 59999999999
Q ss_pred CChHHHhCC--CCH-HHHHHHHHHHHhhcCCCCccEEEEEc-CcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHH---
Q 016965 199 IQQIQVDRG--VTL-SEALLRHDKWLENKGIKNTNFAVVTW-SNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFH--- 271 (379)
Q Consensus 199 IT~~~V~~A--p~~-~eVl~ef~~fl~~~~Lv~hn~iVVh~-~~FDlr~fL~~~~~~~gi~~P~~~~~~iDt~~l~r--- 271 (379)
||++||+++ |+| ++|+++|.+|+++.. ...++|+|| +.||+ .||++++++.|+.+|.....++|+..+++
T Consensus 87 IT~e~l~~aG~P~f~~ev~~~l~~fL~~~~--~~~vLVAHNga~FD~-~FL~~el~r~Gl~~~~~~~~~iDTL~l~r~L~ 163 (314)
T 3u3y_B 87 LSKAELEVQGRQRFDDNLAILLRAFLQRQP--QPCCLVAHNGDRYDF-PLLQTELARLSTPSPLDGTFCVDSIAALKALE 163 (314)
T ss_dssp CCHHHHHHTTCCBSCHHHHHHHHHHHHTSC--SSEEEEETTTTTTHH-HHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHH
T ss_pred CCHHHHHhCCCCCcHHHHHHHHHHHHhcCC--CCcEEEEeCcHHHHH-HHHHHHHHHcCCCCCCCCceEEeHHHHHHHHH
Confidence 999999999 999 799999999999821 112456677 59995 99999999999887544456899987555
Q ss_pred -HhcC-----CCCCCHHHHHHH-cCCCCCCCCCCHHHHHHHHHHHHHHHHHhc
Q 016965 272 -EVFG-----GVRCNLKEAVEM-AGLAWQGRAHCGLDDAKNTARLLALLMHRG 317 (379)
Q Consensus 272 -~l~~-----~~~~rL~~l~~~-~gI~~~g~~HrAL~DA~aTA~Ll~~ll~~~ 317 (379)
+.++ .++++|++++++ ||++.. ++|||++||++|++||+++.++.
T Consensus 164 r~~~P~~~~~~~~~~L~~L~~~l~gi~~~-~aHrAl~DA~ata~lf~~l~~~~ 215 (314)
T 3u3y_B 164 QASSPSGNGSRKSYSLGSIYTRLYWQAPT-DSHTAEGHVLTLLSICQWKPQAL 215 (314)
T ss_dssp TTC-------CCCCSHHHHHHHHHSSCCS-CSSSHHHHHHHHHHHHHSSHHHH
T ss_pred HHhCccccccCCCCCHHHHHHHhcCCCCC-CCCCHHHHHHHHHHHHHHHHHHH
Confidence 3333 267899999999 999986 78999999999999999887654
No 10
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=99.97 E-value=8.9e-32 Score=249.92 Aligned_cols=178 Identities=20% Similarity=0.187 Sum_probs=145.7
Q ss_pred ccEEEEEEeeCCCCCCCCCCCcEEEEceEEEEc-CCCeE--EeEEEEeecCCCCCCCCcchhhhcCCChH-HHhCCCCHH
Q 016965 136 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSS-VTGQL--EACFQTYVRPTCNQLLSDFCKDLTGIQQI-QVDRGVTLS 211 (379)
Q Consensus 136 ~~fVV~D~ETTGl~g~~~~~deIIEIGAV~vd~-~~g~i--~d~F~~~VkP~~~~~Ls~~~~~LTGIT~~-~V~~Ap~~~ 211 (379)
..|||||+||||+ ++..++|||||||+++. .+|++ +++|+++|+|.....++++++++||||++ +|++||++.
T Consensus 29 ~~~vviD~ETTGl---~~~~~~IieIg~v~~~~~~~g~i~~~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~~v~~~~~~~ 105 (224)
T 2f96_A 29 YLPVVVDVETGGF---NSATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKLDHPLRMAVQEE 105 (224)
T ss_dssp EEEEEEEEEESSS---CTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHTCCTTCTTCCCBCHH
T ss_pred CcEEEEEeeCCCC---CCCCCeeEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcCCCHH
Confidence 4899999999998 56779999999999963 26774 78999999994213699999999999997 599999999
Q ss_pred HHHHHHHHHHhhcCC---CCccEEEEEcCcchHHHHHHHHHHHcCCCCCCC-CCceeehHHHHHHhcCCCCCCHHHHHHH
Q 016965 212 EALLRHDKWLENKGI---KNTNFAVVTWSNWDCRVMLESECRFKKIWKPPY-FNRWINLKVPFHEVFGGVRCNLKEAVEM 287 (379)
Q Consensus 212 eVl~ef~~fl~~~~L---v~hn~iVVh~~~FDlr~fL~~~~~~~gi~~P~~-~~~~iDt~~l~r~l~~~~~~rL~~l~~~ 287 (379)
+|+.+|.+|++...- .+..++|+|++.||+ .||+++|++.|+..+++ ..+++||+.+++.++| .++|..++++
T Consensus 106 ~v~~~~~~~l~~~~~~~~~~~~~lV~hn~~FD~-~fL~~~~~~~g~~~~p~~~~~~iDt~~l~~~~~~--~~~L~~l~~~ 182 (224)
T 2f96_A 106 AALTEIFRGIRKALKANGCKRAILVGHNSSFDL-GFLNAAVARTGIKRNPFHPFSSFDTATLAGLAYG--QTVLAKACQA 182 (224)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEEETTHHHHH-HHHHHHHHHHTCCCCCEEEEEEEEHHHHHHHHHS--CCSHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccCCCEEEEeChhhhH-HHHHHHHHHcCCCcCCccccceeeHHHHHHHHcC--CCCHHHHHHH
Confidence 999999999973100 011345566789995 89999999999875333 3579999999998886 3589999999
Q ss_pred cCCCCCC-CCCCHHHHHHHHHHHHHHHHHhcCC
Q 016965 288 AGLAWQG-RAHCGLDDAKNTARLLALLMHRGFK 319 (379)
Q Consensus 288 ~gI~~~g-~~HrAL~DA~aTA~Ll~~ll~~~~~ 319 (379)
||++..+ .+|||++||++|++||.+|+++..+
T Consensus 183 ~gi~~~~~~~H~Al~Da~~ta~l~~~l~~~~~~ 215 (224)
T 2f96_A 183 AGMEFDNREAHSARYDTEKTAELFCGIVNRWKE 215 (224)
T ss_dssp TTCCCCTTSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 9999753 6899999999999999999987543
No 11
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=99.97 E-value=4.4e-31 Score=246.63 Aligned_cols=174 Identities=14% Similarity=0.097 Sum_probs=142.7
Q ss_pred ccEEEEEEeeCCCCCCCCCCCcEEEEceEEEEcC--------------CCeEEeEEEEeecCCCCCCCCcchhhhcCCCh
Q 016965 136 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSV--------------TGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQ 201 (379)
Q Consensus 136 ~~fVV~D~ETTGl~g~~~~~deIIEIGAV~vd~~--------------~g~i~d~F~~~VkP~~~~~Ls~~~~~LTGIT~ 201 (379)
.+|||||+||||+ ++..++|||||+|+++.. .++++++|+++|+|.. .++++++++||||+
T Consensus 10 ~~~v~iD~ETTGl---~~~~~~IieIg~v~~~~~~~~~~~~~~~~~~~~~~i~~~f~~lv~P~~--~i~~~~~~i~GIt~ 84 (238)
T 1y97_A 10 ETFVFLDLEATGL---PSVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMCPER--PFTAKASEITGLSS 84 (238)
T ss_dssp SEEEEEEEEESSC---GGGCCCEEEEEEEEEEHHHHTSCBC---CCCBCCSSCEEEEEECCCSS--CCCHHHHHHHCCCH
T ss_pred CeEEEEEeeCCCc---CCCCCcEEEEEEEEecccccccccccccccccccccceeeEEEECCCC--cCCHHHHHHhCCCH
Confidence 5899999999998 566799999999999732 1378899999999996 59999999999999
Q ss_pred HHH--hCCCCH-HHHHHHHHHHHhhcCCCCccEEEEEcC-cchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhc---
Q 016965 202 IQV--DRGVTL-SEALLRHDKWLENKGIKNTNFAVVTWS-NWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVF--- 274 (379)
Q Consensus 202 ~~V--~~Ap~~-~eVl~ef~~fl~~~~Lv~hn~iVVh~~-~FDlr~fL~~~~~~~gi~~P~~~~~~iDt~~l~r~l~--- 274 (379)
+|| .++|+| ++|++.|.+|+++.. +..++|+||+ .||+ .||++++++.|+.+| ....++||..+++.++
T Consensus 85 ~~l~~~~~p~f~~~v~~~l~~fl~~~~--~~~~lVahN~~~FD~-~fL~~~~~~~g~~~~-~~~~~iDt~~l~~~~~~~~ 160 (238)
T 1y97_A 85 EGLARCRKAGFDGAVVRTLQAFLSRQA--GPICLVAHNGFDYDF-PLLCAELRRLGARLP-RDTVCLDTLPALRGLDRAH 160 (238)
T ss_dssp HHHHHTTCCCSCHHHHHHHHHHHTTSC--SSEEEEETTTTTTHH-HHHHHHHHHHTCCCC-TTCEEEEHHHHHHHHHHHC
T ss_pred HHHhhcCCCccHHHHHHHHHHHHHhCC--CCCEEEecCchhhhH-HHHHHHHHHcCCCCC-CCCEEEEHHHHHHHHHhcc
Confidence 999 588999 599999999998731 1134566778 9995 899999999998775 2346899999998886
Q ss_pred ------C-CCCCCHHHHHH-HcCCCCCCCCCCHHHHHHHHHHHHHHHHHhcCC
Q 016965 275 ------G-GVRCNLKEAVE-MAGLAWQGRAHCGLDDAKNTARLLALLMHRGFK 319 (379)
Q Consensus 275 ------~-~~~~rL~~l~~-~~gI~~~g~~HrAL~DA~aTA~Ll~~ll~~~~~ 319 (379)
+ .++++|+++++ +||++.. .+|||++||++|++||.+++++..+
T Consensus 161 ~p~~~~p~~~~~~L~~l~~~~~gi~~~-~~H~Al~Da~~ta~l~~~l~~~~~~ 212 (238)
T 1y97_A 161 SHGTRARGRQGYSLGSLFHRYFRAEPS-AAHSAEGDVHTLLLIFLHRAAELLA 212 (238)
T ss_dssp ----------CCSHHHHHHHHHSSCCC----CHHHHHHHHHHHHHHTHHHHHH
T ss_pred CccccCCCCCCCCHHHHHHHHhCCCCc-cCccHHHHHHHHHHHHHHHHHHHHH
Confidence 3 36789999999 5999975 6899999999999999999876543
No 12
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=99.97 E-value=1.2e-30 Score=243.81 Aligned_cols=179 Identities=21% Similarity=0.216 Sum_probs=148.2
Q ss_pred ccEEEEEEeeCCCCCCCCCCCcEEEEceEEEEc-CCCe--EEeEEEEeecCCCCCCCCcchhhhcCCChH-HHhCCCCHH
Q 016965 136 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSS-VTGQ--LEACFQTYVRPTCNQLLSDFCKDLTGIQQI-QVDRGVTLS 211 (379)
Q Consensus 136 ~~fVV~D~ETTGl~g~~~~~deIIEIGAV~vd~-~~g~--i~d~F~~~VkP~~~~~Ls~~~~~LTGIT~~-~V~~Ap~~~ 211 (379)
.+|||||+||||+ ++..++|||||+|+++. .+|+ +.++|+++|+|.....++++++++||||++ ||+++|++.
T Consensus 37 ~~~vviD~ETTGl---~~~~~~IieIgav~~~~~~~g~i~~~~~f~~~v~P~~~~~i~~~~~~i~GIt~e~~v~~~~~~~ 113 (235)
T 3v9w_A 37 FYPVVIDVETAGF---NAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGAVSGY 113 (235)
T ss_dssp EEEEEEEEEESSS---CTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHCCCTTCGGGCCBCHH
T ss_pred CcEEEEEEeCCCC---CCCCCeEEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcCCCHH
Confidence 5899999999998 57789999999999852 2676 479999999995323699999999999999 999999999
Q ss_pred HHHHHHHHHHhhcCCC---CccEEEEEcCcchHHHHHHHHHHHcCCCCCCC-CCceeehHHHHHHhcCCCCCCHHHHHHH
Q 016965 212 EALLRHDKWLENKGIK---NTNFAVVTWSNWDCRVMLESECRFKKIWKPPY-FNRWINLKVPFHEVFGGVRCNLKEAVEM 287 (379)
Q Consensus 212 eVl~ef~~fl~~~~Lv---~hn~iVVh~~~FDlr~fL~~~~~~~gi~~P~~-~~~~iDt~~l~r~l~~~~~~rL~~l~~~ 287 (379)
+|+++|.+|+++..-. +...+|+|++.||+ .||+.++++.|+..+++ .+.++||+.+++.++|. ++|++++++
T Consensus 114 ~vl~~~~~~l~~~~~~~~~~~~~lVahN~~fD~-~~L~~~~~~~g~~~~p~~~~~~~Dt~~la~~~~p~--~~L~~l~~~ 190 (235)
T 3v9w_A 114 EALHEIFKVVRKGIKASGCNRAIMVAHNANFDH-SFMMAAAERASLKRNPFHPFATFDTAALAGLALGQ--TVLSKACQT 190 (235)
T ss_dssp HHHHHHHHHHHHHHTTTTCCEEEEEETTTHHHH-HHHHHHHHHTTCCCCCEEEEEEEEHHHHHHHHHSC--CSHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccCCCcEEEEeChHHHH-HHHHHHHHHcCCCCCCCCCCcEEEhHHHHHHHhCC--CCHHHHHHH
Confidence 9999999999631000 11345566789996 89999999999876333 24789999999988873 699999999
Q ss_pred cCCCCCC-CCCCHHHHHHHHHHHHHHHHHhcCCC
Q 016965 288 AGLAWQG-RAHCGLDDAKNTARLLALLMHRGFKF 320 (379)
Q Consensus 288 ~gI~~~g-~~HrAL~DA~aTA~Ll~~ll~~~~~~ 320 (379)
||++..+ .+|+|++||++|++||.+|+++..+.
T Consensus 191 ~gi~~~~~~~H~Al~DA~~ta~l~~~l~~~l~~~ 224 (235)
T 3v9w_A 191 AGMDFDSTQAHSALYDTERTAVLFCEIVNRWKRL 224 (235)
T ss_dssp HTCCCCTTTTTCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCCCCcChHHHHHHHHHHHHHHHHHHHhc
Confidence 9999853 68999999999999999999876554
No 13
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=99.96 E-value=1.8e-29 Score=226.20 Aligned_cols=165 Identities=16% Similarity=0.127 Sum_probs=126.1
Q ss_pred cccEEEEEEeeCCCCCCCCCCCcEEEEceEEEEcCCCeEEe-EEEEeecCCCCC---CCCcch---hhhcCCChHHHhCC
Q 016965 135 FQYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEA-CFQTYVRPTCNQ---LLSDFC---KDLTGIQQIQVDRG 207 (379)
Q Consensus 135 ~~~fVV~D~ETTGl~g~~~~~deIIEIGAV~vd~~~g~i~d-~F~~~VkP~~~~---~Ls~~~---~~LTGIT~~~V~~A 207 (379)
..+|||||+||||+ ++..++|||||||+++ .+|++++ +|+++|||.. + .+++++ .++||||++||+++
T Consensus 4 ~~~~v~iD~ETTGl---~~~~~~IieIg~v~~~-~~~~~~~~~~~~lv~P~~-~i~~~i~~~~~~~~~itGIt~~~l~~~ 78 (180)
T 2igi_A 4 ENNLIWIDLEMTGL---DPERDRIIEIATLVTD-ANLNILAEGPTIAVHQSD-EQLALMDDWNVRTHTASGLVERVKAST 78 (180)
T ss_dssp GGCEEEEEEEESSS---CTTTCCEEEEEEEEEC-TTCCEEEEEEEEECCCCH-HHHTTCCHHHHHHHHHTTHHHHHHHCC
T ss_pred CCcEEEEEeeCCCC---CCCCCceEEEEEEEEc-CCCcEecCCcceEECCCH-HHhhcCCHHHHHHHHHcCCCHHHHhcC
Confidence 46899999999998 5678999999999997 3566665 4999999985 2 245556 45699999999999
Q ss_pred CCHHHHHHHHHHHHhhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceee--hH-HHHHHhcCCCCCCHHHH
Q 016965 208 VTLSEALLRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWIN--LK-VPFHEVFGGVRCNLKEA 284 (379)
Q Consensus 208 p~~~eVl~ef~~fl~~~~Lv~hn~iVVh~~~FDlr~fL~~~~~~~gi~~P~~~~~~iD--t~-~l~r~l~~~~~~rL~~l 284 (379)
|++++|+++|.+|+++..-.+...+|.|++.||+ .||++++.+.+.. +.++++| +. .+.+++++. +
T Consensus 79 ~~~~~v~~~~~~~l~~~~~~~~~~lv~hn~~fD~-~fL~~~~~~~~~~---~~~~~~d~~tl~~l~~~~~p~----~--- 147 (180)
T 2igi_A 79 MGDREAELATLEFLKQWVPAGKSPICGNSIGQDR-RFLFKYMPELEAY---FHYRYLDVSTLKELARRWKPE----I--- 147 (180)
T ss_dssp CCHHHHHHHHHHHHTTTSCTTTSCEEESSHHHHH-HHHHHHCHHHHHH---SCSCEEETHHHHHHHHHHCGG----G---
T ss_pred CCHHHHHHHHHHHHHHhCCCCCceEEecCHHHHH-HHHHHHHHHhccC---CCcceeeHHHHHHHHHHhChH----h---
Confidence 9999999999999997211111234445569995 8999999887632 3456899 65 467776652 1
Q ss_pred HHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHhcC
Q 016965 285 VEMAGLAWQGRAHCGLDDAKNTARLLALLMHRGF 318 (379)
Q Consensus 285 ~~~~gI~~~g~~HrAL~DA~aTA~Ll~~ll~~~~ 318 (379)
..|++.. .+|||++||++|++||.++++...
T Consensus 148 --~~~i~~~-~~H~Al~Da~ata~l~~~~~~~~~ 178 (180)
T 2igi_A 148 --LDGFTKQ-GTHQAMDDIRESVAELAYYREHFI 178 (180)
T ss_dssp --GGGSCCC-CCCCHHHHHHHHHHHHHHHHHHTB
T ss_pred --hhCCCCc-CCcCcHHHHHHHHHHHHHHHHHhh
Confidence 1377764 689999999999999999987643
No 14
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=99.95 E-value=2.2e-29 Score=228.48 Aligned_cols=157 Identities=17% Similarity=0.184 Sum_probs=125.5
Q ss_pred ccEEEEEEeeCCCCCCCCCC-CcEEEEceEEEEcCCCeEEeEEEEeecCCCCCCCCcchhhhcCCChHHHhCCCCHHHHH
Q 016965 136 QYFVVIDFEATCDKDKNPYP-QEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEAL 214 (379)
Q Consensus 136 ~~fVV~D~ETTGl~g~~~~~-deIIEIGAV~vd~~~g~i~d~F~~~VkP~~~~~Ls~~~~~LTGIT~~~V~~Ap~~~eVl 214 (379)
.+|||||+||||+ ++.. .+|||||+|.. +|+++ |+++|||.. +++++++++||||++||++||+|++|+
T Consensus 5 ~~~vviD~ETTGl---~~~~~~~iiei~~v~~---~g~~i--~~~lV~P~~--~i~~~~~~i~GIt~~~l~~a~~~~~v~ 74 (189)
T 1wlj_A 5 REVVAMDCEMVGL---GPHRESGLARCSLVNV---HGAVL--YDKFIRPEG--EITDYRTRVSGVTPQHMVGATPFAVAR 74 (189)
T ss_dssp -CEEEEEEEEEEE---TTTTEEEEEEEEEECT---TCCEE--EEEEEECSS--CEEECCHHHHCCCHHHHTTCEEHHHHH
T ss_pred CeEEEEEeECcCc---CCCCCceEEEEEEEeC---CCCEE--EeeEecCCC--CCCccccCCCCCCHHHHcCCCCHHHHH
Confidence 5899999999998 4444 57889999754 67776 999999996 599999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHH--HH--hcC-CCCCCHHHHHHH-c
Q 016965 215 LRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPF--HE--VFG-GVRCNLKEAVEM-A 288 (379)
Q Consensus 215 ~ef~~fl~~~~Lv~hn~iVVh~~~FDlr~fL~~~~~~~gi~~P~~~~~~iDt~~l~--r~--l~~-~~~~rL~~l~~~-~ 288 (379)
++|.+|+++.+ +|+|++.||+ .||+.. +|. ..++||..++ ++ .++ .++++|++++++ |
T Consensus 75 ~~~~~~l~~~~------lV~hn~~fD~-~~L~~~-------~~~--~~~idt~~~~~~~~~~~~p~~~~~~L~~l~~~~l 138 (189)
T 1wlj_A 75 LEILQLLKGKL------VVGHDLKHDF-QALKED-------MSG--YTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLL 138 (189)
T ss_dssp HHHHHHHTTSE------EEESSHHHHH-HHTTCC-------CTT--CEEEEGGGCHHHHHHHTC-----CCHHHHHHHHT
T ss_pred HHHHHHHCCCE------EEECCcHHHH-HHHHHh-------CCC--CceechHhhhhhhhcccCCCCCCccHHHHHHHHc
Confidence 99999998754 4555569995 898643 332 3589997653 23 333 357899999998 8
Q ss_pred CCCCCCC--CCCHHHHHHHHHHHHHHHHHhcC
Q 016965 289 GLAWQGR--AHCGLDDAKNTARLLALLMHRGF 318 (379)
Q Consensus 289 gI~~~g~--~HrAL~DA~aTA~Ll~~ll~~~~ 318 (379)
|++..+. +|||++||++|++||.++++...
T Consensus 139 gi~~~~~~~~H~Al~Da~ata~l~~~l~~~~~ 170 (189)
T 1wlj_A 139 HKSIQNSLLGHSSVEDARATMELYQISQRIRA 170 (189)
T ss_dssp CCCCSCCTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcCcHHHHHHHHHHHHHHHHHHH
Confidence 9998643 89999999999999999987643
No 15
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=99.95 E-value=5.8e-28 Score=248.84 Aligned_cols=168 Identities=14% Similarity=0.085 Sum_probs=137.2
Q ss_pred ccEEEEEEeeCCCCCCCCCCCcEEEEceEEEEcCCCeEEeE-EEEeecCCCCCCC--CcchhhhcCCChHHHhCCCCH-H
Q 016965 136 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEAC-FQTYVRPTCNQLL--SDFCKDLTGIQQIQVDRGVTL-S 211 (379)
Q Consensus 136 ~~fVV~D~ETTGl~g~~~~~deIIEIGAV~vd~~~g~i~d~-F~~~VkP~~~~~L--s~~~~~LTGIT~~~V~~Ap~~-~ 211 (379)
.+|||||+||||+ ++..++|||||+|+++ .+|+++++ |+++|+|.. + + ++.++.+||||++||.++|.+ .
T Consensus 9 ~~~vv~DlETTGl---~p~~d~IIEIgaV~vd-~~g~ii~~~f~~lVkP~~-~-ilp~p~a~~IhGIT~e~l~~ap~~~~ 82 (482)
T 2qxf_A 9 STFLFHDYETFGT---HPALDRPAQFAAIRTD-SEFNVIGEPEVFYCKPAD-D-YLPQPGAVLITGITPQEARAKGENEA 82 (482)
T ss_dssp CEEEEEEEEESSS---CTTTSCEEEEEEEEEC-TTSCBCSCCEEEEBCCCT-T-CCCCHHHHHHHCCCHHHHHHHCBCHH
T ss_pred CCEEEEEEECCCC---CCCCCeEEEEEEEEEE-CCCeEEeeeeEEEECCCC-C-CCCCHHHHHHhCCCHHHHhcCCCCHH
Confidence 5899999999998 5678999999999996 47888877 999999996 3 5 678899999999999976655 9
Q ss_pred HHHHHHHHHHh--hcCCCCccEEEEEc-CcchHHHHHHHHHHHcCCCCCCC----CCceeehHHHHHHhc----------
Q 016965 212 EALLRHDKWLE--NKGIKNTNFAVVTW-SNWDCRVMLESECRFKKIWKPPY----FNRWINLKVPFHEVF---------- 274 (379)
Q Consensus 212 eVl~ef~~fl~--~~~Lv~hn~iVVh~-~~FDlr~fL~~~~~~~gi~~P~~----~~~~iDt~~l~r~l~---------- 274 (379)
+|+.+|.+|++ +. ++|+|+ ..||+ .||+.+|.+.|+..... .++++||..+++.++
T Consensus 83 evl~~f~~~l~~~~~------~lVaHNs~~FD~-~fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~~~~~~~~wP 155 (482)
T 2qxf_A 83 AFAARIHSLFTVPKT------CILGYNNVRFDD-EVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWP 155 (482)
T ss_dssp HHHHHHHHHHTSTTE------EEEESSTTTTHH-HHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCC
T ss_pred HHHHHHHHHHcCCCC------EEEEECCHHHHH-HHHHHHHHHhCCCccccccccCCceeeHHHHHHHHHHhCcccccCc
Confidence 99999999998 43 345555 59995 89999999998752110 156789988887665
Q ss_pred ----CCCCCCHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHhc
Q 016965 275 ----GGVRCNLKEAVEMAGLAWQGRAHCGLDDAKNTARLLALLMHRG 317 (379)
Q Consensus 275 ----~~~~~rL~~l~~~~gI~~~g~~HrAL~DA~aTA~Ll~~ll~~~ 317 (379)
+..+++|+++++++|++.. .+|+|++||++|++||..+.++.
T Consensus 156 ~~~~~~~s~kL~~L~~~~Gi~~~-~aHrAL~DA~aTa~l~~~l~~~~ 201 (482)
T 2qxf_A 156 ENDDGLPSFRLEHLTKANGIEHS-NAHDAMADVYATIAMAKLVKTRQ 201 (482)
T ss_dssp BCTTSSBCCCHHHHHHHTTCCCC----CTTHHHHHHHHHHHHHHHHS
T ss_pred ccccCCCCCCHHHHHHHcCCCCC-CCCCHHHHHHHHHHHHHHHHHhC
Confidence 2346899999999999985 68999999999999999988653
No 16
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=99.95 E-value=5.5e-28 Score=220.34 Aligned_cols=163 Identities=15% Similarity=0.115 Sum_probs=123.3
Q ss_pred ccEEEEEEeeCCCCCCCCCCCcEEEEceEEEEcCCC-eEEeEEEEeecCCCCCCC----Ccchhhh---cCCChHHHhCC
Q 016965 136 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTG-QLEACFQTYVRPTCNQLL----SDFCKDL---TGIQQIQVDRG 207 (379)
Q Consensus 136 ~~fVV~D~ETTGl~g~~~~~deIIEIGAV~vd~~~g-~i~d~F~~~VkP~~~~~L----s~~~~~L---TGIT~~~V~~A 207 (379)
.+|||||+||||+ ++..++|||||||+.+. ++ .+.++|+++|+|.. + + ++++.++ ||||++||++|
T Consensus 9 ~~~vviD~ETTGl---~p~~d~IieIgav~~~~-~~~~~~~~~~~~v~p~~-~-i~~~~~~~~~~~~~itGIt~~~l~~~ 82 (194)
T 2gbz_A 9 DRLIWIDLEMTGL---DTDRDSIIEIATIVTDA-QLNVLAEGPELAIAHSL-E-TLEAMDEWNRNQHRRSGLWQRVLDSQ 82 (194)
T ss_dssp CEEEEEEEEESCS---CTTTCCEEEEEEEEEET-TCCEEEECCCEECCCCH-H-HHHTSCSHHHHHHHHHTHHHHHHHCC
T ss_pred CCEEEEEeECCCC---CCCCCccEEEEEEEEcC-CcceeccCceEEEeCCH-H-HhhccchHHHHHHHhhCCCHHHHhcC
Confidence 5899999999998 67789999999999763 34 34568999999985 2 4 5555554 99999999999
Q ss_pred CCHHHHHHHHHHHHhhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHH---HHHHhcCCCCCCHHHH
Q 016965 208 VTLSEALLRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKV---PFHEVFGGVRCNLKEA 284 (379)
Q Consensus 208 p~~~eVl~ef~~fl~~~~Lv~hn~iVVh~~~FDlr~fL~~~~~~~gi~~P~~~~~~iDt~~---l~r~l~~~~~~rL~~l 284 (379)
|++.+|+++|.+|+++.+-.+.-.+|+|++.||+ .||++++.+.+.. +.++++|+.. +.+++++. +
T Consensus 83 p~~~ev~~~~~~~l~~~~~~~~~~lvghn~~FD~-~fL~~~~~~~~~~---~~~~~~d~~~l~~l~~~~~p~-------~ 151 (194)
T 2gbz_A 83 VTHAQAEAQTVAFLGEWIRAGASPMCGNSICQDR-RFLHRQMSRLERY---FHYRNLDVSTIKELARRWAPA-------V 151 (194)
T ss_dssp CCHHHHHHHHHHHHTTTCCTTSSCEEESSHHHHH-HHHHHHCHHHHHH---SCSCEEEHHHHHHHHHHHCGG-------G
T ss_pred CCHHHHHHHHHHHHHHhCCCCCceEEecCHHHhH-HHHHHHHHHhccc---CCCccccHHHHHHHHHHhCHH-------H
Confidence 9999999999999998751111124555669995 9999999887632 3356789764 34444331 1
Q ss_pred HHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHhcC
Q 016965 285 VEMAGLAWQGRAHCGLDDAKNTARLLALLMHRGF 318 (379)
Q Consensus 285 ~~~~gI~~~g~~HrAL~DA~aTA~Ll~~ll~~~~ 318 (379)
++ +++.. .+|||++||++|++||..+.+...
T Consensus 152 ~~--~i~~~-~~H~Al~Da~ata~ll~~~~~~~~ 182 (194)
T 2gbz_A 152 AS--GFAKS-SAHTALSDVRDSIDELRHYRQFMG 182 (194)
T ss_dssp GT--TCCCC-SCCSHHHHHHHHHHHHHHHHTTSH
T ss_pred Hh--CCCCC-CCcccHHHHHHHHHHHHHHHHHhc
Confidence 22 46654 689999999999999999987654
No 17
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=99.95 E-value=6.2e-28 Score=220.21 Aligned_cols=160 Identities=14% Similarity=0.093 Sum_probs=123.4
Q ss_pred cccEEEEEEeeCCCCCCCCCCCcEEEEceEEEEcCCCeEEeEE-EEeec-CCCC-CCCCcc---hhhhcCCChHHHhCCC
Q 016965 135 FQYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACF-QTYVR-PTCN-QLLSDF---CKDLTGIQQIQVDRGV 208 (379)
Q Consensus 135 ~~~fVV~D~ETTGl~g~~~~~deIIEIGAV~vd~~~g~i~d~F-~~~Vk-P~~~-~~Ls~~---~~~LTGIT~~~V~~Ap 208 (379)
..+||+||+||||+ ++..|+|||||||+.+ .++++++++ +.+|+ |... ..+++. +..+||||++|+++||
T Consensus 8 ~~~~v~~D~ETTGL---~p~~d~IiEIgaV~~d-~~~~i~~~~~~~~i~~p~~~l~~~~~~~~~ih~ltGIt~~~l~~~p 83 (186)
T 3tr8_A 8 DDNLIWLDLEMTGL---DPERDRIIEIATIVTN-SHLDILAEGPAFAIHQPDKLLTAMDNWNTSHHTASGLLERVKNSSV 83 (186)
T ss_dssp TTCEEEEEEEESSS---CTTTCCEEEEEEEEEC-TTCCEEEECCCEECCCCHHHHTTSCHHHHHHHHHTSHHHHHHTCCC
T ss_pred CCcEEEEEEECCCC---CCCCCceEEEEEEEEc-CCeEEeeeeEEEEEeCCccccccCCcccHHHHhccCCCHHHHhcCC
Confidence 35899999999998 6789999999999664 345676665 55696 5420 013444 5567799999999999
Q ss_pred CHHHHHHHHHHHH------hhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceee--hHH-HHHHhcCCCCC
Q 016965 209 TLSEALLRHDKWL------ENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWIN--LKV-PFHEVFGGVRC 279 (379)
Q Consensus 209 ~~~eVl~ef~~fl------~~~~Lv~hn~iVVh~~~FDlr~fL~~~~~~~gi~~P~~~~~~iD--t~~-l~r~l~~~~~~ 279 (379)
++++|+++|++|+ +++++ |+|++.||+ .||++++.+.|.. +.++++| |.. +.|+++|.
T Consensus 84 ~~~ev~~~~l~fl~~~~~~~~~~l------vghn~~FD~-~FL~~~~~~~~~~---~~~~~iDvsTl~elar~~~P~--- 150 (186)
T 3tr8_A 84 DEVEAETLTLAFLEKYVSAGKSPL------CGNSVCQDR-RFLSRYMPRLNQF---FHYRHLDVTTLKILAQRWAPQ--- 150 (186)
T ss_dssp CHHHHHHHHHHHHTTTSCTTCSCE------EESSTHHHH-HHHHHHCHHHHHH---SCSCEEEHHHHHHHHHHHCHH---
T ss_pred CHHHHHHHHHHHHHHhccCCCcEE------EEEcHHHhH-HHHHHHHHHcCCC---CCCcEEeHHHHHHHHHHHCcc---
Confidence 9999999999999 55544 445569994 9999999887743 3467899 775 88988863
Q ss_pred CHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHhcC
Q 016965 280 NLKEAVEMAGLAWQGRAHCGLDDAKNTARLLALLMHRGF 318 (379)
Q Consensus 280 rL~~l~~~~gI~~~g~~HrAL~DA~aTA~Ll~~ll~~~~ 318 (379)
+. -|++.. .+|||++||++|..+|....+...
T Consensus 151 -~~-----~~~~~~-~~HrAl~Da~ati~~l~~y~~~~~ 182 (186)
T 3tr8_A 151 -IA-----AAHIKE-SQHLALQDIRDSIEELRYYRAHLL 182 (186)
T ss_dssp -HH-----TTSCCC-CCSCHHHHHHHHHHHHHHHHHHTB
T ss_pred -cc-----ccCCCC-CCcChHHHHHHHHHHHHHHHHHhh
Confidence 21 177764 689999999999999999887653
No 18
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=98.82 E-value=4.9e-08 Score=102.95 Aligned_cols=147 Identities=15% Similarity=0.090 Sum_probs=105.9
Q ss_pred ccEEEEEEeeCCCCCCCCCCCcEEEEceEEEEcCCCeEEeEEEEeecCCCCCCCCcchhhhcCCChHHHhCCCCHHHHHH
Q 016965 136 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALL 215 (379)
Q Consensus 136 ~~fVV~D~ETTGl~g~~~~~deIIEIGAV~vd~~~g~i~d~F~~~VkP~~~~~Ls~~~~~LTGIT~~~V~~Ap~~~eVl~ 215 (379)
..+|+||+||||+ ++..++|++||++. . +|+. .||.+. ... + | +.++++++++++
T Consensus 26 ~~~va~DtEttgl---~~~~~~iv~I~~~~-~--~g~~-----~yip~~-~~~-------~-~-----~~~~l~~~~vl~ 80 (605)
T 2kfn_A 26 APVFAFDTETDSL---DNISANLVGLSFAI-E--PGVA-----AYIPVA-HDY-------L-D-----APDQISRERALE 80 (605)
T ss_dssp SSSEEEEEEESCS---CTTTCCEEEEEEEE-E--TTEE-----EEEECC-CCS-------T-T-----CCCCCCHHHHHH
T ss_pred CCeEEEEEecCCC---CcccCceEEEEEEE-c--CCcE-----EEEecc-ccc-------c-c-----cccccCHHHHHH
Confidence 3679999999988 56678999999884 2 5543 355222 110 1 2 235677999999
Q ss_pred HHHHHHhhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcC-CCCCCHHHHHHHc-CCCCC
Q 016965 216 RHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFG-GVRCNLKEAVEMA-GLAWQ 293 (379)
Q Consensus 216 ef~~fl~~~~Lv~hn~iVVh~~~FDlr~fL~~~~~~~gi~~P~~~~~~iDt~~l~r~l~~-~~~~rL~~l~~~~-gI~~~ 293 (379)
.|.+|+++..+ ..|+|++.||+ .+|.+ +|+..+ +.++||....+.+.+ ..+++|++++++| |++..
T Consensus 81 ~L~~~L~d~~i----~kV~hnak~D~-~~L~~----~Gi~l~---~~~~DT~laayLL~p~~~~~~L~~La~~~Lg~~~i 148 (605)
T 2kfn_A 81 LLKPLLEDEKA----LKVGQNLKYDR-GILAN----YGIELR---GIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTI 148 (605)
T ss_dssp HHHHHHTCTTS----CEEESSHHHHH-HHHHT----TTCCCC---CEEEEHHHHHHHHCTTSSCCSHHHHHHHHSCCCCC
T ss_pred HHHHHHcCCCC----eEEEECcHHHH-HHHHH----CCCCCC---CccccHHHHHHHhCCCCCCCCHHHHHHHhcCCCcc
Confidence 99999998532 25667779996 78864 687653 458999877776665 3478999999988 86531
Q ss_pred --------CC-------------CCCHHHHHHHHHHHHHHHHHhcCC
Q 016965 294 --------GR-------------AHCGLDDAKNTARLLALLMHRGFK 319 (379)
Q Consensus 294 --------g~-------------~HrAL~DA~aTA~Ll~~ll~~~~~ 319 (379)
|. .|.|..||.+|++|+..|..+..+
T Consensus 149 ~~~~~~gKg~~~~~~~~~~le~~~~yAa~Da~~~~~L~~~L~~~L~~ 195 (605)
T 2kfn_A 149 TFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 195 (605)
T ss_dssp CHHHHHCSSTTCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred cHHHHhCCCcccCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 156899999999999999877655
No 19
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=98.79 E-value=1.7e-07 Score=90.51 Aligned_cols=173 Identities=18% Similarity=0.156 Sum_probs=120.7
Q ss_pred ccEEEEEEeeCCCCCCCC-------------------CCCcEEEEceEEEEcCCCe-----EEeEEEEeecCCCCCCCCc
Q 016965 136 QYFVVIDFEATCDKDKNP-------------------YPQEIIEFPSVIVSSVTGQ-----LEACFQTYVRPTCNQLLSD 191 (379)
Q Consensus 136 ~~fVV~D~ETTGl~g~~~-------------------~~deIIEIGAV~vd~~~g~-----i~d~F~~~VkP~~~~~Ls~ 191 (379)
-+||++|+|.||+-. .| ..-.||+||...++ .+|+ ..-.|.....|.. ...++
T Consensus 34 ~~fVAiDtEFpGvv~-rp~~~~~~t~d~~Y~~lr~nvd~l~iIQlGLt~f~-~~g~~p~~~~~wqFNF~f~~~~-d~~~~ 110 (285)
T 4gmj_B 34 YNYVAMDTEFPGVVA-RPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMN-EQGEYPPGTSTWQFNFKFNLTE-DMYAQ 110 (285)
T ss_dssp CCEEEEEEECCCCCC-CCTTCCTTSTTHHHHHHHHHHTTSCCCEEEEEEEC-TTSCCCSSCCEEEEEBCCCTTT-SCCCH
T ss_pred CCEEEEEEEecCccC-CCCCccCCCHHHHHHHHHHHHHhhcceeEEEEeec-cCCCcCCCeeEEEEEEEecccc-ccccH
Confidence 489999999999832 22 11259999999997 4554 3556777788875 44677
Q ss_pred chhhh---cCCChHHH-hCCCCHHHHHHHHHHHHhhcCCC-CccEE-EEEcCcchHHHHHHHHHHHcCCCCCC-------
Q 016965 192 FCKDL---TGIQQIQV-DRGVTLSEALLRHDKWLENKGIK-NTNFA-VVTWSNWDCRVMLESECRFKKIWKPP------- 258 (379)
Q Consensus 192 ~~~~L---TGIT~~~V-~~Ap~~~eVl~ef~~fl~~~~Lv-~hn~i-VVh~~~FDlr~fL~~~~~~~gi~~P~------- 258 (379)
.++++ +||+-+.. ..+.+..+ |.+.+....++ ..++. |++++.+|+ .||-+.+-... +|.
T Consensus 111 ~SI~fL~~~G~DF~k~~~~GI~~~~----f~ell~~sglvl~~~v~WvtfH~~yDf-~yL~k~lt~~~--LP~~~~eF~~ 183 (285)
T 4gmj_B 111 DSIELLTTSGIQFKKHEEEGIETQY----FAELLMTSGVVLCEGVKWLSFHSGYDF-GYLIKILTNSN--LPEEELDFFE 183 (285)
T ss_dssp HHHHHHHHHTCCHHHHHHHCBCHHH----HHHHHHTSSSSSCTTCEEEESSCHHHH-HHHHHHHHTSC--CCSSHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHcCCCHHH----HHHHHHHhHHHhcCCCceEEecchhhH-HHHHHHHhCCC--CCCCHHHHHH
Confidence 77776 78887766 46777654 44455545443 23444 445788997 88887765433 331
Q ss_pred ----CCCceeehHHHHHHhcCCCCCCHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHhcCC
Q 016965 259 ----YFNRWINLKVPFHEVFGGVRCNLKEAVEMAGLAWQGRAHCGLDDAKNTARLLALLMHRGFK 319 (379)
Q Consensus 259 ----~~~~~iDt~~l~r~l~~~~~~rL~~l~~~~gI~~~g~~HrAL~DA~aTA~Ll~~ll~~~~~ 319 (379)
++..+.|++-+.+..-+. ..+|.++++.+|++..|..|.|-.|++.|+.+|.+|.+...+
T Consensus 184 ~l~~~FP~vYD~K~l~~~~~~l-~ggL~~lA~~L~v~r~g~~HqAGsDSllT~~~F~kl~~~~f~ 247 (285)
T 4gmj_B 184 ILRLFFPVIYDVKYLMKSCKNL-KGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFE 247 (285)
T ss_dssp HHHHHCSCEEEHHHHGGGSTTC-CSCHHHHHHHTTCCCCSCTTSHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHCchhhhHHHHHHhcccc-CChHHHHHHhCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhc
Confidence 112467877665543332 348999999999998888999999999999999999876543
No 20
>4hec_A Putative uncharacterized protein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, unknown; 1.80A {Mycobacterium tuberculosis}
Probab=98.79 E-value=2.9e-08 Score=90.55 Aligned_cols=153 Identities=16% Similarity=0.159 Sum_probs=94.4
Q ss_pred cEEEEEEeeCCCCCCCCCCCcEEEEceEEEEcCCCeEEeEEEEeecCCCCCCCCcchhh--hcCCChHHHhCCCCHHHHH
Q 016965 137 YFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKD--LTGIQQIQVDRGVTLSEAL 214 (379)
Q Consensus 137 ~fVV~D~ETTGl~g~~~~~deIIEIGAV~vd~~~g~i~d~F~~~VkP~~~~~Ls~~~~~--LTGIT~~~V~~Ap~~~eVl 214 (379)
.-+++|+|+|+. ....++||||+|. ++|+ .|+..+..-.....+++..+ +.++.........++.++.
T Consensus 23 ~r~FlDTEFt~d----~~~~eLISIGlV~---EdGr---EFYav~~d~d~~~~~~wVr~~Vlp~L~~~~~~~~~s~~~i~ 92 (190)
T 4hec_A 23 VRYFYDTEFIED----GHTIELISIGVVA---EDGR---EYYAVSTEFDPERAGSWVRTHVLPKLPPPASQLWRSRQQIR 92 (190)
T ss_dssp EEEEEEEEEEEC----SSCEEEEEEEEEE---TTSC---EEEEEETTSCGGGCCHHHHHHTGGGSCCTTSTTEECHHHHH
T ss_pred eEEEEeeeecCC----CCCCCEEEEEEEc---CCCC---EEEEEecCCChhhCcHHHHhccccCCCCCcccccCCHHHHH
Confidence 458999999974 3568899999984 5775 48877653211236777664 6777665555667999999
Q ss_pred HHHHHHHhhcCCCCccEEEEEc-CcchHHHHHHHHHHHcCCCCCC-CCCceeehHHHHHHhcCCCCCCHHHHHHHcCCC-
Q 016965 215 LRHDKWLENKGIKNTNFAVVTW-SNWDCRVMLESECRFKKIWKPP-YFNRWINLKVPFHEVFGGVRCNLKEAVEMAGLA- 291 (379)
Q Consensus 215 ~ef~~fl~~~~Lv~hn~iVVh~-~~FDlr~fL~~~~~~~gi~~P~-~~~~~iDt~~l~r~l~~~~~~rL~~l~~~~gI~- 291 (379)
.+|.+|++... +....|+.| +.|| ..+|.+.+...+ ..|. +.....|++.++.. .+ ...++
T Consensus 93 ~~L~~FL~~~~--~~~~eLwa~~~~yD-~~~L~ql~g~m~-~lP~~~p~~~~dlr~~~~~-~g-----------~~~lp~ 156 (190)
T 4hec_A 93 LDLEEFLRIDG--TDSIELWAWVGAYD-HVALCQLWGPMT-ALPPTVPRFTRELRQLWED-RG-----------CPRMPP 156 (190)
T ss_dssp HHHHHHTTTTS--SCEEEEEESSCHHH-HHHHHTTTSSGG-GSCTTSCSSCEEHHHHHHH-TT-----------CCCCCC
T ss_pred HHHHHHHHhcC--CCCCEEEEeccccc-HHHHHHHhcccc-cCCcccchhhHHHHHHHHH-cC-----------CCCCCC
Confidence 99999997542 112334554 7899 478765443211 1221 11122466554432 11 11222
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHH
Q 016965 292 WQGRAHCGLDDAKNTARLLALLMH 315 (379)
Q Consensus 292 ~~g~~HrAL~DA~aTA~Ll~~ll~ 315 (379)
..+..|+||.||++.+..++.+..
T Consensus 157 ~~~~~H~AL~DAR~n~~~~~~~~~ 180 (190)
T 4hec_A 157 RPRDVHDALVDARDQLRRFRLITS 180 (190)
T ss_dssp -----CCHHHHHHHHHHHHHHHHC
T ss_pred CCCCCcCcHHHHHHHHHHHHHHhC
Confidence 123569999999999999988864
No 21
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=98.48 E-value=3.4e-07 Score=98.11 Aligned_cols=141 Identities=17% Similarity=0.151 Sum_probs=91.7
Q ss_pred EEEEEEeeCCCCCCCCCCCcEEEEceEEEEcCCCeEEeEEEEeecCCCCCCCCcchhhhcCCChHHHhCCCCHHHHHHHH
Q 016965 138 FVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALLRH 217 (379)
Q Consensus 138 fVV~D~ETTGl~g~~~~~deIIEIGAV~vd~~~g~i~d~F~~~VkP~~~~~Ls~~~~~LTGIT~~~V~~Ap~~~eVl~ef 217 (379)
+||||+||||+ ++..++|..|.++ +..++++ | .+.|. .+++++..|
T Consensus 1 ~vv~D~ETtGl---~~~~d~i~~iqi~--~~~~~~~---~--~~~p~------------------------~i~~~l~~L 46 (698)
T 1x9m_A 1 MIVSDIEANAL---LESVTKFHCGVIY--DYSTAEY---V--SYRPS------------------------DFGAYLDAL 46 (698)
T ss_dssp CEEEEEEESSC---GGGCCCEEEEEEE--ETTTTEE---E--EECGG------------------------GHHHHHHHH
T ss_pred CEEEEcCCCCc---CCCCCEEEEEEEE--ecCCCcE---E--EEChH------------------------HHHHHHHHH
Confidence 58999999998 5667887666443 3223332 1 22222 124466778
Q ss_pred HHHHhhcCCCCccEEEEEcC-cchHHHHHHHHHHH---cCCCCCCCCCceeehHHHHHHhcC-CCCCCHHHHHHHc----
Q 016965 218 DKWLENKGIKNTNFAVVTWS-NWDCRVMLESECRF---KKIWKPPYFNRWINLKVPFHEVFG-GVRCNLKEAVEMA---- 288 (379)
Q Consensus 218 ~~fl~~~~Lv~hn~iVVh~~-~FDlr~fL~~~~~~---~gi~~P~~~~~~iDt~~l~r~l~~-~~~~rL~~l~~~~---- 288 (379)
.+|+.... ..|+|++ .||+ .+|.+.+++ .|+..++ ..++||..+.+.+.+ ..+++|++++++|
T Consensus 47 ~~~l~~~~-----~kV~HNa~kfD~-~~L~~~~~~~~~~Gi~l~~--~~~~DTmlaayLL~p~~~~~~L~~La~~~L~~s 118 (698)
T 1x9m_A 47 EAEVARGG-----LIVFHNGHKYDV-PALTKLAKLQLNREFHLPR--ENCIDTLVLSRLIHSNLKDTDMGLLRSGKLPGA 118 (698)
T ss_dssp HHHHHTTC-----CEEESSTTTTHH-HHHHHHHHHHHCCCCCCCG--GGEEEHHHHHHHHTTTSCCCTTTTSCGGGSCSC
T ss_pred HHHHhcCC-----eEEEcCChHHHH-HHHHHhhhhcccCCccCCC--CcchhHHHHHHHhCCCCCCCCHHHHHHHHcccc
Confidence 88886221 2577888 9996 899877654 3775431 468999877776665 3467777777666
Q ss_pred ----CC-------CC----------CC---C------------CCCHHHHHHHHHHHHHHHHHhcCCC
Q 016965 289 ----GL-------AW----------QG---R------------AHCGLDDAKNTARLLALLMHRGFKF 320 (379)
Q Consensus 289 ----gI-------~~----------~g---~------------~HrAL~DA~aTA~Ll~~ll~~~~~~ 320 (379)
|. ++ .| . .|.|..||.+|.+|+..|..+..+.
T Consensus 119 L~~~g~~lg~~Ki~~~~~~g~~~~~kg~~~~~~~~~~~~~~~~~~YA~~Da~~t~~L~~~L~~~L~~~ 186 (698)
T 1x9m_A 119 LEAWGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWWNFNEEMMDYNVQDVVVTKALLEKLLSDKHYF 186 (698)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTGGGTSCCHHHHHHHHHHHHHHHHHHHHHHTCTTTS
T ss_pred hhhhcccccccccCHHHHhCcccccccccccccCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 31 10 01 0 4678999999999999998865544
No 22
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=98.40 E-value=1.3e-05 Score=75.98 Aligned_cols=174 Identities=17% Similarity=0.138 Sum_probs=119.8
Q ss_pred ccEEEEEEeeCCCCCCCC------------------CCCcEEEEceEEEEcCCCeE-----EeEEEEeecCCCCCCCCcc
Q 016965 136 QYFVVIDFEATCDKDKNP------------------YPQEIIEFPSVIVSSVTGQL-----EACFQTYVRPTCNQLLSDF 192 (379)
Q Consensus 136 ~~fVV~D~ETTGl~g~~~------------------~~deIIEIGAV~vd~~~g~i-----~d~F~~~VkP~~~~~Ls~~ 192 (379)
-+||++|+|.+|+..... ..-.||++|...++ .+|+. .-.|+....... ...++.
T Consensus 24 ~~fvAmDtEFpGvv~rp~g~f~~~~~~~Y~~lr~nVd~l~iIQlGlt~~~-~~g~~p~~~~~wqFNF~F~~~~-d~~~~~ 101 (252)
T 2d5r_A 24 YNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMN-EQGEYPPGTSTWQFNFKFNLTE-DMYAQD 101 (252)
T ss_dssp CCEEEEEEECCCCCCCCCSCCSSHHHHHHHHHHHHHTTCCCCEEEEEEEC-TTSCCCSSCCEEEEEBCCCTTT-SCCCHH
T ss_pred CCEEEEEeeecceecccCCCCCCCHHHHHHHHHHhhhhcceeEEEEEEEc-cCCCCCCCceeEEEEEEECCcc-cccCHH
Confidence 489999999999943210 12579999999998 56654 455666644543 335666
Q ss_pred hhhh---cCCChHHH-hCCCCHHHHHHHHHHHHhhcCCC-CccEEEEE-cCcchHHHHHHHHHHHcCCCCCC--------
Q 016965 193 CKDL---TGIQQIQV-DRGVTLSEALLRHDKWLENKGIK-NTNFAVVT-WSNWDCRVMLESECRFKKIWKPP-------- 258 (379)
Q Consensus 193 ~~~L---TGIT~~~V-~~Ap~~~eVl~ef~~fl~~~~Lv-~hn~iVVh-~~~FDlr~fL~~~~~~~gi~~P~-------- 258 (379)
+.++ +||+-+.. ..+.+..+ |.+.+-..+|+ ..++.+++ ++.+|+ +||-+.+-.. ++|.
T Consensus 102 Si~fL~~~G~DF~k~~~~GI~~~~----F~ell~~sglvl~~~v~Witfhg~yDf-~yL~k~L~~~--~LP~~~~~F~~~ 174 (252)
T 2d5r_A 102 SIELLTTSGIQFKKHEEEGIETQY----FAELLMTSGVVLCEGVKWLSFHSGYDF-GYLIKILTNS--NLPEEELDFFEI 174 (252)
T ss_dssp HHHHHHHHTCCHHHHHHHCBCHHH----HHHHHHTTTSSSSSSCEEEESSCHHHH-HHHHHHHHTS--CCCSSHHHHHHH
T ss_pred HHHHHHHcCCChhHHHhcCCCHHH----HHHHHHhcCcccCCCceEEEecCcchH-HHHHHHhcCC--CCCCCHHHHHHH
Confidence 6655 58888766 46777764 55555555544 34555554 688997 7887766533 3442
Q ss_pred ---CCCceeehHHHHHHhcCCCCCCHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHhcCC
Q 016965 259 ---YFNRWINLKVPFHEVFGGVRCNLKEAVEMAGLAWQGRAHCGLDDAKNTARLLALLMHRGFK 319 (379)
Q Consensus 259 ---~~~~~iDt~~l~r~l~~~~~~rL~~l~~~~gI~~~g~~HrAL~DA~aTA~Ll~~ll~~~~~ 319 (379)
++..++|++-+.+...+. ..+|..+++.+|++..|..|.|-.|+..|+.+|.+|.+....
T Consensus 175 l~~~FP~iyD~K~l~~~~~~l-~~gL~~la~~L~v~r~g~~HqAGsDsllT~~~F~km~~~~f~ 237 (252)
T 2d5r_A 175 LRLFFPVIYDVKYLMKSCKNL-KGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFE 237 (252)
T ss_dssp HHHHCSCEEEHHHHGGGCTTC-CSSHHHHHHHHTCCCCSSTTSHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHCcchhhHHHHHHHhccc-CCCHHHHHHHcCCCccCcccchhhhHHHHHHHHHHHHHHhcC
Confidence 112457877665543333 357999999999998889999999999999999999877643
No 23
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=98.34 E-value=1.5e-05 Score=77.01 Aligned_cols=173 Identities=14% Similarity=0.111 Sum_probs=116.9
Q ss_pred ccEEEEEEeeCCCCCCCC------------------CCCcEEEEceEEEEcCCCeE------EeEEEEeecCCCCCCCCc
Q 016965 136 QYFVVIDFEATCDKDKNP------------------YPQEIIEFPSVIVSSVTGQL------EACFQTYVRPTCNQLLSD 191 (379)
Q Consensus 136 ~~fVV~D~ETTGl~g~~~------------------~~deIIEIGAV~vd~~~g~i------~d~F~~~VkP~~~~~Ls~ 191 (379)
-+||++|+|.+|+..... ..-.||++|...++ .+|+. .-.|+...+... ...++
T Consensus 38 ~~fVAmDtEFpGvv~rp~g~f~~~~d~~Yq~lr~nVd~l~iIQlGLt~~~-~~g~~p~~~~~~wqFNF~F~~~~-d~~~~ 115 (289)
T 1uoc_A 38 YNHVSISTEFVGTLARPIGTFRSKVDYHYQTMRANVDFLNPIQLGLSLSD-ANGNKPDNGPSTWQFNFEFDPKK-EIMST 115 (289)
T ss_dssp SCEEEEEEEEEC----------CHHHHHHHHHHHHHTTCEEEEEEEEEEC-TTCCCCSSSCSEEEEEBCCCTTC-CCCCH
T ss_pred CCEEEEEeeecceeccCCcccCCCHHHHHHHHHHhhhhccceEEEEEEEc-cCCCcCCCCcceEEEEEEECCcc-ccccH
Confidence 589999999999942110 23579999999998 45553 455666544443 23555
Q ss_pred chhhh---cCCChHHH-hCCCCHHHHHHHHHHHHhhcCCC-CccEEEEE-cCcchHHHHHHHHHHHcCCCCCC-------
Q 016965 192 FCKDL---TGIQQIQV-DRGVTLSEALLRHDKWLENKGIK-NTNFAVVT-WSNWDCRVMLESECRFKKIWKPP------- 258 (379)
Q Consensus 192 ~~~~L---TGIT~~~V-~~Ap~~~eVl~ef~~fl~~~~Lv-~hn~iVVh-~~~FDlr~fL~~~~~~~gi~~P~------- 258 (379)
.++++ +||+-+.. .++.+.. +|.+.+-..+|+ ..++.+++ ++.+|+ +||-+.+-.. ++|.
T Consensus 116 ~SI~fL~~~G~DF~k~~~~GI~~~----~F~ell~~sgLvl~~~v~Witfhg~yDf-gyL~k~Lt~~--~LP~~~~~F~~ 188 (289)
T 1uoc_A 116 ESLELLRKSGINFEKHENLGIDVF----EFSQLLMDSGLMMDDSVTWITYHAAYDL-GFLINILMND--SMPNNKEDFEW 188 (289)
T ss_dssp HHHHHHHHTTCCHHHHHHHCBCHH----HHHHHHHTSSCSSCTTSEEEESSTTHHH-HHHHHHHTTS--CCCSSHHHHHH
T ss_pred HHHHHHHHcCCChhHHHHcCCCHH----HHHHHHHhcCCccCCCceEEEccCcchH-HHHHHHhccc--cCCcCHHHHHH
Confidence 56654 68887766 4677776 455556566555 33455555 588997 7887666432 3442
Q ss_pred ----CCCceeehHHHHHHhcCCC--------------CCCHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHhc
Q 016965 259 ----YFNRWINLKVPFHEVFGGV--------------RCNLKEAVEMAGLAWQGRAHCGLDDAKNTARLLALLMHRG 317 (379)
Q Consensus 259 ----~~~~~iDt~~l~r~l~~~~--------------~~rL~~l~~~~gI~~~g~~HrAL~DA~aTA~Ll~~ll~~~ 317 (379)
++..+.|++-+.+...+.. ..+|..+++.+|++..|..|.|-.|++.|+.+|.+|.+..
T Consensus 189 ~l~~~FP~iyD~K~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~lA~~L~v~r~g~~HqAGsDSllT~~~F~kl~~~~ 265 (289)
T 1uoc_A 189 WVHQYMPNFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADELGLPRFSIFTTTGGQSLLMLLSFCQLSKLS 265 (289)
T ss_dssp HHHHHCSSEEEHHHHHHHHTTTCC-------------CCSHHHHHHHTTCCCCGGGGSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhCccceeHHHHHHHHHhccCcccccccccccccCCCHHHHHHHcCCCccCcccccHHHHHHHHHHHHHHHHHH
Confidence 1225679877665443322 3479999999999988889999999999999999998765
No 24
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=98.29 E-value=2.1e-05 Score=77.15 Aligned_cols=172 Identities=19% Similarity=0.188 Sum_probs=118.9
Q ss_pred ccEEEEEEeeCCCCCCCC------------------CCCcEEEEceEEEEcCCCeE-----EeEEEEeecCCCCCCCCcc
Q 016965 136 QYFVVIDFEATCDKDKNP------------------YPQEIIEFPSVIVSSVTGQL-----EACFQTYVRPTCNQLLSDF 192 (379)
Q Consensus 136 ~~fVV~D~ETTGl~g~~~------------------~~deIIEIGAV~vd~~~g~i-----~d~F~~~VkP~~~~~Ls~~ 192 (379)
-.||++|+|.+|+..... ..-.||+||...++ .+|+. .-.|........ ...++.
T Consensus 45 ~~fVAmDtEFpGvv~rp~g~f~~~~e~~Yq~lR~NVd~l~iIQlGLt~fd-~~G~~p~~~~twqFNF~F~~~~-d~~~~~ 122 (333)
T 2p51_A 45 YPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDSLKIIQIGLALSD-EEGNAPVEACTWQFNFTFNLQD-DMYAPE 122 (333)
T ss_dssp SCEEEEEEECCCCCCCCCSCCSSSHHHHHHHHHHHHHHSCCCEEEEEEEC-TTSCCCTTCSEEEEEBCCCTTT-SCCCHH
T ss_pred CCEEEEeeeccccccccccccCCCHHHHHHHHHHhhhhccceEEEEEEEc-cCCCCCCCceeEEEEEEECCcc-cccCHH
Confidence 489999999999943211 11369999999998 56653 556666655543 335666
Q ss_pred hhhh---cCCChHHH-hCCCCHHHHHHHHHHHHhhcCCC-CccEEEEE-cCcchHHHHHHHHHHHcCCCCCC--------
Q 016965 193 CKDL---TGIQQIQV-DRGVTLSEALLRHDKWLENKGIK-NTNFAVVT-WSNWDCRVMLESECRFKKIWKPP-------- 258 (379)
Q Consensus 193 ~~~L---TGIT~~~V-~~Ap~~~eVl~ef~~fl~~~~Lv-~hn~iVVh-~~~FDlr~fL~~~~~~~gi~~P~-------- 258 (379)
++++ +||+-+.. .++.+..+ |.+.+-..+|+ ..++.+++ ++.+|+ +||-+.+-. -++|.
T Consensus 123 SI~fL~~~G~DF~k~~~~GI~~~~----F~elL~~SGLvl~~~V~Witfhg~YDf-gyLlK~Lt~--~~LP~~~~eF~~~ 195 (333)
T 2p51_A 123 SIELLTKSGIDFKKHQEVGIEPAD----FAELLIGSGLVLQEEVTWITFHSGYDF-AYLLKAMTQ--IPLPAEYEEFYKI 195 (333)
T ss_dssp HHHHHHHTTCCHHHHHHHCBCHHH----HHHHHHTTTSSSCTTCEEEESSCHHHH-HHHHHHHHC--SCCCSSHHHHHHH
T ss_pred HHHHHHHcCCChhHHHHcCCCHHH----HHHHHHhcCcccCCCceEEEeccchhH-HHHHHHhcC--CCCCCCHHHHHHH
Confidence 6665 58988776 47888774 55555555544 33455554 588997 788776643 23442
Q ss_pred ---CCCceeehHHHHHHhcCCCCCCHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHhc
Q 016965 259 ---YFNRWINLKVPFHEVFGGVRCNLKEAVEMAGLAWQGRAHCGLDDAKNTARLLALLMHRG 317 (379)
Q Consensus 259 ---~~~~~iDt~~l~r~l~~~~~~rL~~l~~~~gI~~~g~~HrAL~DA~aTA~Ll~~ll~~~ 317 (379)
++..++|++-+.+...+. ..+|..+++.+|++..|..|.|-.|++.|+.+|.+|.+..
T Consensus 196 l~~~FP~iYD~K~l~~~~~~l-~ggL~~lA~~L~v~Rig~~HqAGsDSlLT~~~F~kl~~~~ 256 (333)
T 2p51_A 196 LCIYFPKNYDIKYIMKSVLNN-SKGLQDIADDLQIHRIGPQHQAGSDALLTARIFFEIRSRY 256 (333)
T ss_dssp HHHHSSSEEEHHHHHTTTTCC-CCCHHHHHHHTTCCCCSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCcchhhHHHHHHHhccc-cCCHHHHHHHcCCCccCcchhhhhHHHHHHHHHHHHHHHh
Confidence 112466877666543332 3589999999999988999999999999999999998754
No 25
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=98.16 E-value=3.5e-05 Score=83.48 Aligned_cols=153 Identities=14% Similarity=0.057 Sum_probs=105.2
Q ss_pred ccEEEEEEeeCCCCCCCCCCCcEEEEceEEEEcCCCeEEeEEEEeecCCCCCCCCcchhhhcCCChHHHhCCCCHHHHHH
Q 016965 136 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALL 215 (379)
Q Consensus 136 ~~fVV~D~ETTGl~g~~~~~deIIEIGAV~vd~~~g~i~d~F~~~VkP~~~~~Ls~~~~~LTGIT~~~V~~Ap~~~eVl~ 215 (379)
-.+++||+||||..+.++..++||.||.+.- ++..+ +. .+| |....|...++..+.+.
T Consensus 135 l~ilsfDIEt~~~~~p~~~~d~Ii~Is~~~~---~~~~~--~t--~~~---------------i~~~~v~~~~~E~~LL~ 192 (775)
T 1qht_A 135 LTMLAFAIATLYHEGEEFGTGPILMISYADG---SEARV--IT--WKK---------------IDLPYVDVVSTEKEMIK 192 (775)
T ss_dssp CCEEEEEEEECCCTTCCTTCSCEEEEEEECS---SCEEE--EE--SSC---------------CCCSSEEECSCHHHHHH
T ss_pred cEEEEEEEEEcCCCCCCCCCCcEEEEEEEec---CCCee--Ee--ecc---------------ccccceEEcCCHHHHHH
Confidence 3899999999996555678899999996532 33211 11 112 12223556788999999
Q ss_pred HHHHHHhhcCCCCccEEEEEc-CcchHHHHHHHHHHHcCCCCCCC---------------------CCceeehHHHHHHh
Q 016965 216 RHDKWLENKGIKNTNFAVVTW-SNWDCRVMLESECRFKKIWKPPY---------------------FNRWINLKVPFHEV 273 (379)
Q Consensus 216 ef~~fl~~~~Lv~hn~iVVh~-~~FDlr~fL~~~~~~~gi~~P~~---------------------~~~~iDt~~l~r~l 273 (379)
.|.+++..... .+++.+| .+||+ .+|..-+..+|++.+ + ....+|+..++++.
T Consensus 193 ~f~~~i~~~dP---DiivGyN~~~FDl-pyL~~Ra~~~gi~~~-lgR~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~k~~ 267 (775)
T 1qht_A 193 RFLRVVREKDP---DVLITYNGDNFDF-AYLKKRCEELGIKFT-LGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRT 267 (775)
T ss_dssp HHHHHHHHHCC---SEEEESSTTTTHH-HHHHHHHHHTTCCCC-CSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHHHH
T ss_pred HHHHHHHhcCC---CEEEEeCCCCccH-HHHHHHHHHcCCCcc-cccCCCcCceeecCceeeEEecCeEEEEHHHHHHHh
Confidence 99999987531 2344444 47997 899988888888753 1 12357998888888
Q ss_pred cCCCCCCHHHHHH-HcCCCCCCCC------------------CCHHHHHHHHHHHHHHHHH
Q 016965 274 FGGVRCNLKEAVE-MAGLAWQGRA------------------HCGLDDAKNTARLLALLMH 315 (379)
Q Consensus 274 ~~~~~~rL~~l~~-~~gI~~~g~~------------------HrAL~DA~aTA~Ll~~ll~ 315 (379)
+...+++|+++++ .+|....+-. ...+.||..|.+|+..++.
T Consensus 268 ~~l~sysL~~Va~~~Lg~~K~dv~~~~i~~~~~~~~~l~~l~~Y~~~Da~lt~~L~~~~~~ 328 (775)
T 1qht_A 268 INLPTYTLEAVYEAVFGKPKEKVYAEEIAQAWESGEGLERVARYSMEDAKVTYELGREFFP 328 (775)
T ss_dssp SCCSCCCHHHHHHHHHCCCCCCCCHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCcCCHHHHHHHHhCCCCCccCHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 7778899999997 5887532111 1126799999999876653
No 26
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=97.88 E-value=2.8e-06 Score=94.26 Aligned_cols=67 Identities=12% Similarity=0.129 Sum_probs=51.1
Q ss_pred ccccCchhhhhhhhhcCCceeeeccCCCCCCCCCCCCCCcccccccccccCcccccchhcccCCCCCCccccccccccCC
Q 016965 44 TIVHPGGDAGESIHQLSSEFVEYSNEFYNNPTYQHDFGSWSTFYPDSQKVHHCQMNSFESQFYPFPVENRFQFAPYNMLT 123 (379)
Q Consensus 44 ~~~~~~~~~i~~a~~~g~~aiaitd~~~~~~~~h~~~q~~p~~~~~~~k~~~~~~~g~e~~~y~~~v~d~~~~~~~~~~~ 123 (379)
.++.++.++|++|++||++|||||| |++++++|+++.++++.|++.++|+|.+. ++++. ++++++
T Consensus 129 DG~~~~~eLv~~A~~~G~~aiAITD--------H~~~~G~~~~~~~a~~~gIk~I~G~E~~~----~~~~~---~~~~~~ 193 (1041)
T 3f2b_A 129 DAVTSVTKLIEQAKKWGHPAIAVTD--------HAVVQSFPEAYSAAKKHGMKVIYGLEANI----VDDGV---PIAYNE 193 (1041)
T ss_dssp TCCSCHHHHHHHHHHTTCSCEEECC--------BSCCTTHHHHHHHHHHHTCCEEEEEEEEE----ECC-----------
T ss_pred cccCCHHHHHHHHHHCCCCEEEEec--------ccchhhHHHHHHHHHHCCCEEEEEEEEEE----EeCCc---cccccc
Confidence 3556899999999999999999999 77888999999999999999999999984 45543 444554
Q ss_pred CC
Q 016965 124 PA 125 (379)
Q Consensus 124 ~~ 125 (379)
.+
T Consensus 194 ~~ 195 (1041)
T 3f2b_A 194 TH 195 (1041)
T ss_dssp --
T ss_pred cc
Confidence 33
No 27
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=97.61 E-value=0.0014 Score=72.34 Aligned_cols=157 Identities=15% Similarity=0.100 Sum_probs=101.7
Q ss_pred cEEEEEEeeCCCCCC--CCCCCcEEEEceEEEEcCCCeE---E-eEEEEeecCCCCCCCCcchhhhcCCChHHHhCCCCH
Q 016965 137 YFVVIDFEATCDKDK--NPYPQEIIEFPSVIVSSVTGQL---E-ACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTL 210 (379)
Q Consensus 137 ~fVV~D~ETTGl~g~--~~~~deIIEIGAV~vd~~~g~i---~-d~F~~~VkP~~~~~Ls~~~~~LTGIT~~~V~~Ap~~ 210 (379)
..+.||+||++..|. ++..|+||.|+.+.-. .|.. . ..| .+.+.. .+....|...++.
T Consensus 250 rilSfDIEt~~~~g~fP~~~~D~Ii~IS~~v~~--~g~~~~~~r~~f--~l~~~~------------~~~~~~V~~~~sE 313 (919)
T 3iay_A 250 RIMSFDIECAGRIGVFPEPEYDPVIQIANVVSI--AGAKKPFIRNVF--TLNTCS------------PITGSMIFSHATE 313 (919)
T ss_dssp EEEEEEEEECCCTTSCCCTTTCCEEEEEEEEEE--TTCSSCSEEEEE--EESCCC------------CBTTBEEEEESSH
T ss_pred eEEEEEEEECCCCCCCCCCCCCcEEEEEEEEec--CCCcccceeEEE--EecCCC------------CCCCCeEEECCCH
Confidence 689999999976442 4567999999987643 3321 1 112 122211 1223456678899
Q ss_pred HHHHHHHHHHHhhcCCCCccEEEEEcC-cchHHHHHHHHHHHcCCCCC-CCC----------------------------
Q 016965 211 SEALLRHDKWLENKGIKNTNFAVVTWS-NWDCRVMLESECRFKKIWKP-PYF---------------------------- 260 (379)
Q Consensus 211 ~eVl~ef~~fl~~~~Lv~hn~iVVh~~-~FDlr~fL~~~~~~~gi~~P-~~~---------------------------- 260 (379)
.+.|..|.+|+..... .+++.+|+ +||+ .+|..-++.+|++.+ .+.
T Consensus 314 ~eLL~~F~~~i~~~DP---DIIvGyNi~~FDl-pyL~~Ra~~lgi~~~~~lGR~~~~~~~~~~~~~~~~~~g~~~~~~~~ 389 (919)
T 3iay_A 314 EEMLSNWRNFIIKVDP---DVIIGYNTTNFDI-PYLLNRAKALKVNDFPYFGRLKTVKQEIKESVFSSKAYGTRETKNVN 389 (919)
T ss_dssp HHHHHHHHHHHHHHCC---SEEEESSTTTTHH-HHHHHHHHHTTCTTCSCCSSBTTCCCCBCCEEEEETTTEEEEECCBC
T ss_pred HHHHHHHHHHHHHhCC---CEEEecCCccCCH-HHHHHHHHHcCCCchhhhccccCccccccccccccccccccccceeE
Confidence 9999999999987421 33334443 7997 899888888887631 110
Q ss_pred ---CceeehHHHHHHhcCCCCCCHHHHHHH-cCCCCCCCCC-------------------CHHHHHHHHHHHHHHH
Q 016965 261 ---NRWINLKVPFHEVFGGVRCNLKEAVEM-AGLAWQGRAH-------------------CGLDDAKNTARLLALL 313 (379)
Q Consensus 261 ---~~~iDt~~l~r~l~~~~~~rL~~l~~~-~gI~~~g~~H-------------------rAL~DA~aTA~Ll~~l 313 (379)
.-.+|+..++++.+...+++|+++++. +|....+-+| -.+.||..|.+|+.++
T Consensus 390 i~GR~~lDl~~~~k~~~~l~sysL~~Va~~~Lg~~K~dv~~~~I~~l~~~~~~~~~~L~~Y~~~Da~l~~~L~~kl 465 (919)
T 3iay_A 390 IDGRLQLDLLQFIQREYKLRSYTLNAVSAHFLGEQKEDVHYSIISDLQNGDSETRRRLAVYCLKDAYLPLRLMEKL 465 (919)
T ss_dssp CTTCEEEEHHHHHHHHCCCSCCCHHHHHHHHHCCC------CCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EcCeEEEEhHHHHHhhcCCCCCCHHHHHHHhcccCCCCCCHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 025688888888777889999999865 4543221111 1267999999998876
No 28
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=97.51 E-value=0.0011 Score=68.52 Aligned_cols=85 Identities=14% Similarity=-0.076 Sum_probs=56.9
Q ss_pred cEEEEEcCcchHHHHHHHHHHHcCCCCCC-----------CCCceeehHHHHHH--hcC-CCCCCHHHHHHHcC-----C
Q 016965 230 NFAVVTWSNWDCRVMLESECRFKKIWKPP-----------YFNRWINLKVPFHE--VFG-GVRCNLKEAVEMAG-----L 290 (379)
Q Consensus 230 n~iVVh~~~FDlr~fL~~~~~~~gi~~P~-----------~~~~~iDt~~l~r~--l~~-~~~~rL~~l~~~~g-----I 290 (379)
+.+|.||+-.|+ .||-+.+- | ++|. ++..++||+-++.. +.. ....+|..+.+.++ .
T Consensus 277 kpiVgHN~l~Dl-~~l~~~F~--~-pLP~~~~eFk~~i~~lFP~i~DTK~la~~~~~~~~~~~~~L~~l~~~l~~~~~~~ 352 (507)
T 3d45_A 277 KLVVGHNMLLDV-MHTIHQFY--C-PLPADLNEFKEMAICVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFDP 352 (507)
T ss_dssp CEEEESSCHHHH-HHHHHHHT--C-SCCSSHHHHHHHHHHHCSCEEEHHHHTTSTTHHHHCCCCCHHHHHHHTTSTTCCC
T ss_pred CeEEEechHHHH-HHHHHHhc--C-CCCCCHHHHHHHHHHhCCceeEhHhhhhcCccccccCCCCHHHHHHHHhccCCCC
Confidence 556778888997 67766653 2 3442 12257899766542 111 13568999999886 3
Q ss_pred CC-------------CCCCCCHHHHHHHHHHHHHHHHHhcC
Q 016965 291 AW-------------QGRAHCGLDDAKNTARLLALLMHRGF 318 (379)
Q Consensus 291 ~~-------------~g~~HrAL~DA~aTA~Ll~~ll~~~~ 318 (379)
|. .+..|.|-+||+.|+.+|.+|.....
T Consensus 353 p~i~~~~~~~~y~~~~~~~HeAGyDA~mTg~~F~kl~~~l~ 393 (507)
T 3d45_A 353 PKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG 393 (507)
T ss_dssp CCEEECTTSCCCC----CCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CeEEecccccccccCCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 32 24579999999999999999986544
No 29
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=97.49 E-value=0.0024 Score=63.52 Aligned_cols=166 Identities=11% Similarity=0.017 Sum_probs=98.0
Q ss_pred cEEEEEEeeCCCCC-CCC--CCCcEEEEceEEEEcCCCeEEeEEEEeecCCCCCCCCcchhh------hcCCC---hH--
Q 016965 137 YFVVIDFEATCDKD-KNP--YPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKD------LTGIQ---QI-- 202 (379)
Q Consensus 137 ~fVV~D~ETTGl~g-~~~--~~deIIEIGAV~vd~~~g~i~d~F~~~VkP~~~~~Ls~~~~~------LTGIT---~~-- 202 (379)
..++||+||++ .+ .++ ..++||.|+.+-. .+++. ..| .++++.... ..+...+ +..++ ..
T Consensus 107 ~vlsfDIEt~~-~~fP~~~~~~d~Ii~Is~~~~--~~~~~-~~~-~l~~~~~~~-~~~~~~~~~~~~~~f~~~~~~~~~~ 180 (388)
T 1noy_A 107 RVANCDIEVTG-DKFPDPMKAEYEIDAITHYDS--IDDRF-YVF-DLLNSMYGS-VSKWDAKLAAKLDCEGGDEVPQEIL 180 (388)
T ss_dssp CEEEEEEEECC-SSCCCTTTCCSCEEEEEEEET--TTTEE-EEE-EECCCSSCC-CCCCCHHHHHSCGGGTCCCCCHHHH
T ss_pred EEEEEEEEeCC-CCCCCCCCCCCeEEEEEEEEe--cCCeE-EEE-EEeeccCCC-CCccccccccccccccccccccccC
Confidence 78999999998 22 122 2469999987533 34431 112 235442101 1111110 11111 11
Q ss_pred ---HHhCCCCHHHHHHHHHHHHhhcCCCCccEEEEEcC-cchHHHHHHHHHHH-cCCC----CCCCC-------------
Q 016965 203 ---QVDRGVTLSEALLRHDKWLENKGIKNTNFAVVTWS-NWDCRVMLESECRF-KKIW----KPPYF------------- 260 (379)
Q Consensus 203 ---~V~~Ap~~~eVl~ef~~fl~~~~Lv~hn~iVVh~~-~FDlr~fL~~~~~~-~gi~----~P~~~------------- 260 (379)
.|...++..+.+..|.+++..... .+++.+|+ +||+ .+|..-++. +|+. ++.+.
T Consensus 181 ~~v~v~~~~~E~~LL~~f~~~i~~~dP---Dii~GyN~~~FDl-pyL~~Ra~~~lg~~l~~~~s~~~r~~~~~~~~~~g~ 256 (388)
T 1noy_A 181 DRVIYMPFDNERDMLMEYINLWEQKRP---AIFTGWNIEGFDV-PYIMNRVKMILGERSMKRFSPIGRVKSKLLQNMYGS 256 (388)
T ss_dssp TTEEEEEESCHHHHHHHHHHHHHHSCC---SEEECSSTTTTHH-HHHHHHHHHHHHHHHHGGGSTTSCEEEEECCGGGCS
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHHhCC---cEEEecCCCCccH-HHHHHHHHHHcCCccccccCcccccccccChhhhCC
Confidence 123567899999999999976421 23333443 8997 788776665 5521 00000
Q ss_pred --------CceeehHHHHHHh-cC-CCCCCHHHHHH-HcCCCCCCCCCC----------------HHHHHHHHHHHHHHH
Q 016965 261 --------NRWINLKVPFHEV-FG-GVRCNLKEAVE-MAGLAWQGRAHC----------------GLDDAKNTARLLALL 313 (379)
Q Consensus 261 --------~~~iDt~~l~r~l-~~-~~~~rL~~l~~-~~gI~~~g~~Hr----------------AL~DA~aTA~Ll~~l 313 (379)
.-.+|+..+++.+ +. ..+++|+++++ .+|.... .++. .+.||..|.+|+.++
T Consensus 257 ~~~~~i~GR~~lD~~~~~k~~~~~~l~sysL~~Va~~~Lg~~K~-d~~~~i~~~~~~~~~~l~~Y~~~D~~l~~~L~~kl 335 (388)
T 1noy_A 257 KEIYSIDGVSILDYLDLYKKFAFTNLPSFSLESVAQHETKKGKL-PYDGPINKLRETNHQRYISYNIIDVESVQAIDKIR 335 (388)
T ss_dssp CEEEEETTSEECCHHHHHHHHTCCCCSCCSHHHHHHHHHSCCCC-CCSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEcCeEEeEHHHHHhhcCcCcccCCCHHHHHHHHhCCCCC-CcHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0167998888884 66 78899999998 6776433 2212 478999999999884
No 30
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=97.47 E-value=0.0006 Score=74.60 Aligned_cols=155 Identities=21% Similarity=0.130 Sum_probs=97.5
Q ss_pred cEEEEEEee-CCCCCCCCC----CCcEEEEceEEEEcCCCeEEeEEEEeecCCCCCCCCcchhhhcCCChHHHhCCCCHH
Q 016965 137 YFVVIDFEA-TCDKDKNPY----PQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLS 211 (379)
Q Consensus 137 ~fVV~D~ET-TGl~g~~~~----~deIIEIGAV~vd~~~g~i~d~F~~~VkP~~~~~Ls~~~~~LTGIT~~~V~~Ap~~~ 211 (379)
.+++||+|| ||..|+-|. .+.||+||.+ + .+|. +-..+++|.. .+..+.. |....|..-++..
T Consensus 191 ~ilsfDIEt~s~~~g~fP~~~~~~d~Ii~Is~~--~-~~g~---~~~~~~~~~~---~~~~~~~---i~~~~v~~~~~E~ 258 (847)
T 1s5j_A 191 KRVAIDIEVYTPVKGRIPDSQKAEFPIISIALA--G-SDGL---KKVLVLNRND---VNEGSVK---LDGISVERFNTEY 258 (847)
T ss_dssp CEEEEEEEECCSSSSCCCCTTTCCSCEEEEEEE--E-TTSC---EEEEEECSSC---CCCCCEE---ETTEEEEEESSHH
T ss_pred eEEEEEEEeCcCCCCCCCCccccCCcEEEEEEE--c-cCCC---cEEEEEeCCc---ccccccC---CCCCeEEEeCCHH
Confidence 789999999 865343343 3799999985 3 3443 2235666652 2222222 2333455677899
Q ss_pred HHHHHHHHHHhhcCCCCccEEEEEc--CcchHHHHHHHHHHHcCCCC---CC-C---------CCceeehHHHHHH----
Q 016965 212 EALLRHDKWLENKGIKNTNFAVVTW--SNWDCRVMLESECRFKKIWK---PP-Y---------FNRWINLKVPFHE---- 272 (379)
Q Consensus 212 eVl~ef~~fl~~~~Lv~hn~iVVh~--~~FDlr~fL~~~~~~~gi~~---P~-~---------~~~~iDt~~l~r~---- 272 (379)
+.|..|.+|+.+. . ++++| .+||+ .+|..-+.++|+.. |. + ....+|+...++.
T Consensus 259 ~LL~~f~~~i~~~-----d-iivgyN~~~FDl-PyL~~Ra~~lgi~~~~~p~~~~gr~~~~i~gr~~~Dl~~~~~~~~~~ 331 (847)
T 1s5j_A 259 ELLGRFFDILLEY-----P-IVLTFNGDDFDL-PYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNKAVR 331 (847)
T ss_dssp HHHHHHHHHHTTC-----S-EEEESSTTTTHH-HHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSHHHH
T ss_pred HHHHHHHHHhccC-----C-EEEEeCCCCchH-HHHHHHHHHcCCCcccCCeeecCCCceEeccEEEeehHHHHhhhhhh
Confidence 9999999999764 3 35554 47997 89999888888853 21 1 1234677665542
Q ss_pred --hcC--CCCCCHHHHHH-HcCCCCCC------CC------CCHHHHHHHHHHHH
Q 016965 273 --VFG--GVRCNLKEAVE-MAGLAWQG------RA------HCGLDDAKNTARLL 310 (379)
Q Consensus 273 --l~~--~~~~rL~~l~~-~~gI~~~g------~~------HrAL~DA~aTA~Ll 310 (379)
.+. ..+++|+++++ .+|....+ +. .-.+.||..|.+|+
T Consensus 332 ~y~f~~kl~sysL~~Va~~~Lg~~K~dv~~~i~~~~~~~l~~Ycl~Da~lt~~L~ 386 (847)
T 1s5j_A 332 NYAFEGKYNEYNLDAVAKALLGTSKVKVDTLISFLDVEKLIEYNFRDAEITLQLT 386 (847)
T ss_dssp HHTSTTCCSSCSHHHHHHHHHCCCCC--SSCTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhccccccccccHHHHHHHHhCCCCcchhHhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 122 35789999998 56643211 00 11367999999984
No 31
>2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, beta, PHP, transferase; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A*
Probab=97.30 E-value=5.5e-05 Score=83.30 Aligned_cols=54 Identities=6% Similarity=-0.005 Sum_probs=49.4
Q ss_pred ccccCchhhhhhhhhcCCceeeeccCCCCCCCCCCCCCCcccccccccccCcccccchhccc
Q 016965 44 TIVHPGGDAGESIHQLSSEFVEYSNEFYNNPTYQHDFGSWSTFYPDSQKVHHCQMNSFESQF 105 (379)
Q Consensus 44 ~~~~~~~~~i~~a~~~g~~aiaitd~~~~~~~~h~~~q~~p~~~~~~~k~~~~~~~g~e~~~ 105 (379)
-++.+++++|++|+++|+++||||| |+.+.++++++.++++.|++.++|+|.+.
T Consensus 19 DG~~~~~elv~~A~~~Gl~alAITD--------H~~~~G~~~~~~~~~~~gIk~I~G~Ei~~ 72 (910)
T 2hnh_A 19 DGLAKTAPLVKKAAALGMPALAITD--------FTNLCGLVKFYGAGHGAGIKPIVGADFNV 72 (910)
T ss_dssp SCCSCHHHHHHHHHHTTCSEEEECC--------BTCCTTHHHHHHHHHHHTCEEEEEEEEEE
T ss_pred cccCCHHHHHHHHHHCCCCEEEEEe--------CCcchhHHHHHHHHHHCCCeEEEEEEEEE
Confidence 4677899999999999999999999 77778999999989999999999999884
No 32
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=97.22 E-value=0.001 Score=69.25 Aligned_cols=118 Identities=13% Similarity=0.092 Sum_probs=86.5
Q ss_pred cEEEEEEeeCCCCCCCCCCCcEEEEceEEEEcCCCeEEeEEEEeecCCCCCCCCcchhhhcCCChHHHhCCCCHHHHHHH
Q 016965 137 YFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALLR 216 (379)
Q Consensus 137 ~fVV~D~ETTGl~g~~~~~deIIEIGAV~vd~~~g~i~d~F~~~VkP~~~~~Ls~~~~~LTGIT~~~V~~Ap~~~eVl~e 216 (379)
..|++|+|+.++ ++...+++-|+.. . .++. | +| + +++..
T Consensus 11 ~~valDtE~~~~---~~~~a~Lvgi~la--~--~~~a---~--~i--------~---------------------~~l~~ 49 (540)
T 4dfk_A 11 EGAFVGFVLSRK---EPMWADLLALAAA--R--GGRV---H--RA--------P---------------------EPYKA 49 (540)
T ss_dssp TTCEEEEEESSS---CTTTCCEEEEEEE--E--TTEE---E--EC--------S---------------------SHHHH
T ss_pred CceEEEEEecCC---ccCcccEEEEEEE--c--CCEE---E--Ee--------h---------------------hhHHH
Confidence 458999999987 5677777766443 2 3332 1 11 0 36688
Q ss_pred HHHHHhhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcCCCCCCHHHHHHHcCCCCCCCC
Q 016965 217 HDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGGVRCNLKEAVEMAGLAWQGRA 296 (379)
Q Consensus 217 f~~fl~~~~Lv~hn~iVVh~~~FDlr~fL~~~~~~~gi~~P~~~~~~iDt~~l~r~l~~~~~~rL~~l~~~~gI~~~g~~ 296 (379)
|.+|+++...++||+ .||+ . ++|+..+ .++||+..++.+.+. +++|++++++|...+ .
T Consensus 50 l~~~l~d~~kV~hn~------K~Dl-~-------~~Gi~~~----~~fDT~laAyLL~p~-~~~L~~La~~yl~~~---g 107 (540)
T 4dfk_A 50 LRDLKEARGLLAKDL------SVLA-L-------REGLGLP----PGDDPMLLAYLLDPS-NTTPEGVARRYGGEW---T 107 (540)
T ss_dssp HTTCSSBCSTTHHHH------HHHH-H-------HTTCCCC----BCCCHHHHHHHHCTT-CCCHHHHHHHHTSCC---C
T ss_pred HHHHHcCCCEEEecc------HHHH-H-------HcCCCCC----cceeHHHHHHHhCCC-CCCHHHHHHHHhhhh---c
Confidence 999998855555554 8886 3 6788643 468998777777777 899999999987543 3
Q ss_pred CCHHHHHHHHHHHHHHHHHhc
Q 016965 297 HCGLDDAKNTARLLALLMHRG 317 (379)
Q Consensus 297 HrAL~DA~aTA~Ll~~ll~~~ 317 (379)
|+|..||.+|++|+..|..+.
T Consensus 108 k~a~~DA~~t~~L~~~L~~~L 128 (540)
T 4dfk_A 108 EEAGERAALSERLFANLWGRL 128 (540)
T ss_dssp SCHHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHHH
Confidence 689999999999999998877
No 33
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B*
Probab=97.20 E-value=0.0081 Score=67.97 Aligned_cols=169 Identities=14% Similarity=0.068 Sum_probs=100.2
Q ss_pred cEEEEEEeeCCCCC---CCC----CCCcEEEEceEEEEcCCCeEEeEEEEee-cCCCCCCCCc-ch--hhhcCCChHHHh
Q 016965 137 YFVVIDFEATCDKD---KNP----YPQEIIEFPSVIVSSVTGQLEACFQTYV-RPTCNQLLSD-FC--KDLTGIQQIQVD 205 (379)
Q Consensus 137 ~fVV~D~ETTGl~g---~~~----~~deIIEIGAV~vd~~~g~i~d~F~~~V-kP~~~~~Ls~-~~--~~LTGIT~~~V~ 205 (379)
..+.||+||++..+ +-| ..|.||.|+.+.....+... ...+| ...... .+. +. .+-.++....|.
T Consensus 321 rvlsfDIE~~~~g~~~~~FP~a~~~~D~Ii~IS~~~~~~~~~~~---~~~~v~~l~~~~-~~~~f~~~~k~~~~~~~~V~ 396 (1193)
T 2gv9_A 321 KLMCFDIECKAGGEDELAFPVAGHPEDLVIQISCLLYDLSTTAL---EHVLLFSLGSCD-LPESHLNELAARGLPTPVVL 396 (1193)
T ss_dssp EEEEEEEEEECCSSCTTSCCCTTSTTSEEEEEEEEEEETTTCCE---EEEEEEEESCCC-CCHHHHHHHHHTTCCCCEEE
T ss_pred eEEEEEEEEcccCCCCCCCCCccccCCceEEEEEEEEeccCCCc---ceEEEEECCCcC-CcchhhhhcccccCCCceEE
Confidence 78999999986410 112 35899999988765222111 11222 111101 111 11 011122212355
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCccEEEEEc-CcchHHHHHHHH-HHHcCCCCCCCC-----------------------
Q 016965 206 RGVTLSEALLRHDKWLENKGIKNTNFAVVTW-SNWDCRVMLESE-CRFKKIWKPPYF----------------------- 260 (379)
Q Consensus 206 ~Ap~~~eVl~ef~~fl~~~~Lv~hn~iVVh~-~~FDlr~fL~~~-~~~~gi~~P~~~----------------------- 260 (379)
.-++..+.|..|.+++..... .+++.++ .+||+ .+|..- ...+|++++.+.
T Consensus 397 ~~~sE~eLL~~F~~~I~~~DP---DIIvGyNi~~FDl-pyL~~Ra~~~~gl~l~~~GRl~r~~~~k~~~~~~~~f~~~~~ 472 (1193)
T 2gv9_A 397 EFDSEFEMLLAFMTLVKQYGP---EFVTGYNIINFDW-PFLLAKLTDIYKVPLDGYGRMNGRGVFRVWDIGQSHFQKRSK 472 (1193)
T ss_dssp EESSHHHHHHHHHHHHHHHCC---SEEEESSTTTTHH-HHHHHHHHHTTCCCCTTTSSBSSSCCEEECC----------C
T ss_pred ecCCHHHHHHHHHHHHHhcCC---CEEEEcCCcCccH-HHHHHHHHHHcCCChHHhcccccCCcceeeccccccccccce
Confidence 567899999999999987532 2344444 47997 777765 466777665221
Q ss_pred -----CceeehHHHHHHhcCCCCCCHHHHHHH-cCCCCCCCCC-------------------CHHHHHHHHHHHHHHH
Q 016965 261 -----NRWINLKVPFHEVFGGVRCNLKEAVEM-AGLAWQGRAH-------------------CGLDDAKNTARLLALL 313 (379)
Q Consensus 261 -----~~~iDt~~l~r~l~~~~~~rL~~l~~~-~gI~~~g~~H-------------------rAL~DA~aTA~Ll~~l 313 (379)
.-.+|+..+.++.+...+++|+.+++. +|....+-.+ ..+.||..|.+|+.++
T Consensus 473 ~~i~GRv~lDl~~~~~~~~kl~sYsL~~Va~~~Lg~~K~dv~~~eI~~~~~~~~~~r~~L~~Ycl~Da~lt~~L~~kl 550 (1193)
T 2gv9_A 473 IKVNGMVNIDMYGIITDKIKLSSYKLNAVAEAVLKDKKKDLSYRDIPAYYATGPAQRGVIGEYCIQDSLLVGQLFFKF 550 (1193)
T ss_dssp EEETTBEEEEHHHHHTTTCCCSCCCHHHHHHHTSCCCCCCCCTTTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEcCeEeehHHHHHHHHhccCCCCHHHHHHHHhccCCCCCCHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 024688777777777789999999974 7754321111 1257899999998876
No 34
>3o0f_A Putative metal-dependent phosphoesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: AMP; 1.94A {Bifidobacterium adolescentis} PDB: 3e0f_A*
Probab=96.79 E-value=0.00036 Score=67.69 Aligned_cols=53 Identities=11% Similarity=0.049 Sum_probs=48.5
Q ss_pred ccccCchhhhhhhhhcCCceeeeccCCCCCCCCCCCCCCcccccccccccCcccccchhcc
Q 016965 44 TIVHPGGDAGESIHQLSSEFVEYSNEFYNNPTYQHDFGSWSTFYPDSQKVHHCQMNSFESQ 104 (379)
Q Consensus 44 ~~~~~~~~~i~~a~~~g~~aiaitd~~~~~~~~h~~~q~~p~~~~~~~k~~~~~~~g~e~~ 104 (379)
.++.++.++|++|++.|.++||||| |..+.++++++.++++.+++.++|+|-.
T Consensus 25 DG~~~~~elv~~A~~~Gl~~iaiTD--------H~~~~g~~~~~~~~~~~gi~~i~GvEis 77 (301)
T 3o0f_A 25 DGTETPRTLVEQARKLGLHGVAIAD--------HDTTAGWDEATEASEEIGLPLLLGTEIT 77 (301)
T ss_dssp TCSSCHHHHHHHHHHTTCSEEEECC--------BTCCTTHHHHHHHHHHHTCCEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEcC--------CCccccHHHHHHHHHhcCCEEEEEEEEE
Confidence 4567899999999999999999999 8888899999988888999999999876
No 35
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=96.69 E-value=0.0004 Score=78.35 Aligned_cols=54 Identities=7% Similarity=0.036 Sum_probs=49.2
Q ss_pred ccccCchhhhhhhhh--cCCceeeeccCCCCCCCCCCCCCCcccccccccccCcccccchhccc
Q 016965 44 TIVHPGGDAGESIHQ--LSSEFVEYSNEFYNNPTYQHDFGSWSTFYPDSQKVHHCQMNSFESQF 105 (379)
Q Consensus 44 ~~~~~~~~~i~~a~~--~g~~aiaitd~~~~~~~~h~~~q~~p~~~~~~~k~~~~~~~g~e~~~ 105 (379)
.++.+++++|++|++ +|++|||||| |+++.+.++++.++++.|++.+.|+|.+.
T Consensus 20 DG~~~~~elv~~A~~~~~G~~alAITD--------H~~~~G~~~f~~~a~~~gIk~I~G~E~~~ 75 (1220)
T 2hpi_A 20 DGAAKLQDLLKWVKETTPEDPALAMTD--------HGNLFGAVEFYKKATAMGVKPIIGYEAYV 75 (1220)
T ss_dssp TCCCCHHHHHHHHHHHCCSSCEEEEEE--------ETCCTTHHHHHHHHHTTTCEEEEEEEEEE
T ss_pred cccCCHHHHHHHHHhccCCCCEEEEEe--------cCcchhHHHHHHHHHHcCCeEEEEEEEEE
Confidence 367789999999999 9999999999 77778999999989999999999999884
No 36
>2yb1_A Amidohydrolase; HET: AMP; 1.90A {Chromobacterium violaceum} PDB: 2yb4_A
Probab=96.28 E-value=0.0014 Score=62.69 Aligned_cols=53 Identities=6% Similarity=-0.009 Sum_probs=46.7
Q ss_pred cccCchhhhhhhhhcCCceeeeccCCCCCCCCCCCCCCcccccccccccCcccccchhccc
Q 016965 45 IVHPGGDAGESIHQLSSEFVEYSNEFYNNPTYQHDFGSWSTFYPDSQKVHHCQMNSFESQF 105 (379)
Q Consensus 45 ~~~~~~~~i~~a~~~g~~aiaitd~~~~~~~~h~~~q~~p~~~~~~~k~~~~~~~g~e~~~ 105 (379)
+..++.++|++|++.|.++||||| |..+.++++++..+++.++++++|+|-..
T Consensus 15 g~~~~~elv~~A~~~Gl~~iaiTD--------H~~~~g~~~~~~~~~~~gi~vi~G~Ei~~ 67 (292)
T 2yb1_A 15 GALTPTEVIDRAAARAPALLALTD--------HDCTGGLAEAAAAAARRGIPFLNGVEVSV 67 (292)
T ss_dssp CSSCHHHHHHHHHTTCCSEEEECC--------BTCCTTHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred CCCCHHHHHHHHHHCCCCEEEEec--------CCccccHHHHHHHHHHcCCEEEEEEEEEE
Confidence 567889999999999999999999 77777888888777788999999999873
No 37
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ...
Probab=96.03 E-value=0.11 Score=57.12 Aligned_cols=167 Identities=10% Similarity=0.018 Sum_probs=96.6
Q ss_pred ccEEEEEEeeCCCCC-CCC--CCCcEEEEceEEEEcCCCeEEeEEEEeecCCCCCCCCcchhh---------hcCCChHH
Q 016965 136 QYFVVIDFEATCDKD-KNP--YPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKD---------LTGIQQIQ 203 (379)
Q Consensus 136 ~~fVV~D~ETTGl~g-~~~--~~deIIEIGAV~vd~~~g~i~d~F~~~VkP~~~~~Ls~~~~~---------LTGIT~~~ 203 (379)
-..+.||+|++.-.+ .+| ..++||.|+.+ |..+.+. -.|..+-.|.. ...++..+ -..+..+.
T Consensus 108 ir~~~~DIEv~~~~~fPd~~~~~~~Ii~It~~--d~~~~~~-~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (903)
T 3qex_A 108 IRVANFDIEVTSPDGFPEPSQAKHPIDAITHY--DSIDDRF-YVFDLLNSPYG--NVEEWSIEIAAKLQEQGGDEVPSEI 182 (903)
T ss_dssp SCEEEEEEECCCTTSSCCTTTCCSCCCEEEEE--ETTTTEE-EEEEECEETTE--ECCCCCHHHHHSCGGGTCCCCCHHH
T ss_pred ccEEEEeEEeCCCCCCCCcccCCCCEEEEEEE--eCCCCEE-EEEEeeccccc--ccccccccccccccccccccccccc
Confidence 478999999987433 112 36899999887 5344442 12212222211 11122111 11233333
Q ss_pred Hh-----CCCCHHHHHHHHHHHHhhcCCCCccEEEE-Ec-CcchHHHHHHHHHHH-cCCCC----CCCC-----------
Q 016965 204 VD-----RGVTLSEALLRHDKWLENKGIKNTNFAVV-TW-SNWDCRVMLESECRF-KKIWK----PPYF----------- 260 (379)
Q Consensus 204 V~-----~Ap~~~eVl~ef~~fl~~~~Lv~hn~iVV-h~-~~FDlr~fL~~~~~~-~gi~~----P~~~----------- 260 (379)
+. .-++..+.|.+|.+|+..... . +|+ +| .+||+ .+|..-++. +|+.. +.+.
T Consensus 183 ~~~v~v~~f~sE~eLL~~F~~~I~~~DP---D-IItGyN~~~FDl-PYL~~RA~~l~gi~~~~~ls~~gR~~~~~~~~~~ 257 (903)
T 3qex_A 183 IDKIIYMPFDNEKELLMEYLNFWQQKTP---V-ILTGWNVESFAI-PYVYNRIKNIFGESTAKRLSPHRKTRVKVIENMY 257 (903)
T ss_dssp HTTEEEEEESSHHHHHHHHHHHHHHTCC---S-EEECSSTTTTHH-HHHHHHHHHHHCHHHHGGGSTTSCEEEEEEEETT
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHHhCC---C-EEEecCCccCCH-HHHHHHHHHHcCCcccccccccccccccchhhhc
Confidence 33 346889999999999986421 2 344 34 47997 788777665 56521 1111
Q ss_pred ----------CceeehHHHHHHh-c-CCCCCCHHHHHHHcCCCCCCCCCC----------------HHHHHHHHHHHHHH
Q 016965 261 ----------NRWINLKVPFHEV-F-GGVRCNLKEAVEMAGLAWQGRAHC----------------GLDDAKNTARLLAL 312 (379)
Q Consensus 261 ----------~~~iDt~~l~r~l-~-~~~~~rL~~l~~~~gI~~~g~~Hr----------------AL~DA~aTA~Ll~~ 312 (379)
.-.+|+..+++.. + +..+++|+.+++++.-......|. .+.||..|.+|+.+
T Consensus 258 G~~~~~~i~GRv~lDl~~~~k~~~~~~l~SYsLd~VA~~lLg~~K~d~~~~I~~~~~~d~~~L~~Ycl~Da~Lt~~L~~K 337 (903)
T 3qex_A 258 GSREIITLFGISVLDYIDLYKKFSFTNQPSYSLDYISEFELNVGKLKYDGPISKLRESNHQRYISYNIIAVYRVLQIDAK 337 (903)
T ss_dssp EEEEEEEETTCEECCHHHHHHHHSCCCCSCCCHHHHHHHHHCCCCCCCSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceeEEEeCeEEeeHHHHHHHhCccCcCCCCHHHHHHHHcCCCccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 1256888888763 2 467899999987654322111121 16799999999987
No 38
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=95.49 E-value=0.27 Score=53.34 Aligned_cols=150 Identities=12% Similarity=0.090 Sum_probs=91.4
Q ss_pred cEEEEEEeeCCCCCCCCCCCcEEEEceEEEEcCCCeEEeEEEEeecCCCCCCCCcchhhhcCCChHHHhCCCCHHHHHHH
Q 016965 137 YFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALLR 216 (379)
Q Consensus 137 ~fVV~D~ETTGl~g~~~~~deIIEIGAV~vd~~~g~i~d~F~~~VkP~~~~~Ls~~~~~LTGIT~~~V~~Ap~~~eVl~e 216 (379)
..+.||+|+++- .+|++||.. + .+. +..-++=.|.. . - .+.+..|..-++..+.|..
T Consensus 154 rilsfDIE~~~~-------g~i~~I~~~--~--~~~--~~v~~l~~~~~-~-~--------~~~~~~V~~f~~E~~lL~~ 210 (786)
T 3k59_A 154 KWVSIDIETTRH-------GELYCIGLE--G--CGQ--RIVYMLGPENG-D-A--------SSLDFELEYVASRPQLLEK 210 (786)
T ss_dssp CEEEEEEEECTT-------SCEEEEEEE--E--TTE--EEEEEESSCCS-C-C--------TTCSSEEEEESSHHHHHHH
T ss_pred eEEEEEEEEcCC-------CCEEEEEec--C--CCC--CeEEEEecCCC-C-C--------CCCCceEEEeCCHHHHHHH
Confidence 789999999942 369999842 2 121 11112211211 0 0 1222345556688999999
Q ss_pred HHHHHhhcCCCCccEEEEEc-CcchHHHHHHHHHHHcCCCCC-------------CCC----------CceeehHHHHHH
Q 016965 217 HDKWLENKGIKNTNFAVVTW-SNWDCRVMLESECRFKKIWKP-------------PYF----------NRWINLKVPFHE 272 (379)
Q Consensus 217 f~~fl~~~~Lv~hn~iVVh~-~~FDlr~fL~~~~~~~gi~~P-------------~~~----------~~~iDt~~l~r~ 272 (379)
|.+|+..... .+++.+| .+||+ .+|..-++.+|++.. .+. .-.+|+..+.+.
T Consensus 211 f~~~i~~~dP---Dii~g~N~~~FD~-pyL~~Ra~~~~i~~~lGR~~~~~~~~~~~~~~~~~~~~i~GRv~lDl~~~lk~ 286 (786)
T 3k59_A 211 LNAWFANYDP---DVIIGWNVVQFDL-RMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKS 286 (786)
T ss_dssp HHHHHHHHCC---SEEEESSTTTTHH-HHHHHHHHHHTCCCCCBTTTBCCEEEECSSSTTCEEEECTTCEEEEHHHHHHH
T ss_pred HHHHHHHcCC---CEEEecCCccCcH-HHHHHHHHHhCCCceeccCCCcccccccccCCCceeEEEcCEEEEEhHHHHHh
Confidence 9999987531 2344444 47997 889888888777531 000 114677777764
Q ss_pred -hcCCCCCCHHHHHHHc-CCCCCC-CCC-------------------CHHHHHHHHHHHHHHH
Q 016965 273 -VFGGVRCNLKEAVEMA-GLAWQG-RAH-------------------CGLDDAKNTARLLALL 313 (379)
Q Consensus 273 -l~~~~~~rL~~l~~~~-gI~~~g-~~H-------------------rAL~DA~aTA~Ll~~l 313 (379)
.+...+++|+++++.+ |..-.. ..| -.+.||..+.+|+.++
T Consensus 287 ~~~~l~SysL~~Va~~~Lg~~K~~~~~~~~~~eI~~~~~~~~~~L~~Y~l~Da~L~~~L~~kl 349 (786)
T 3k59_A 287 AFWNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKNCELVTQIFHKT 349 (786)
T ss_dssp TTCCCSCCSHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCHHHHHHHHhCCCCcccCccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667899999999875 433211 111 1268999999998874
No 39
>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; structural genomics; 2.20A {Bacteroides vulgatus atcc 8482}
Probab=94.11 E-value=0.008 Score=59.14 Aligned_cols=62 Identities=6% Similarity=-0.069 Sum_probs=47.8
Q ss_pred ccccCchhhhhhhhhcCCceeeeccCCCCCCC----CCCCCCCcccccccccccCcccccchhccc
Q 016965 44 TIVHPGGDAGESIHQLSSEFVEYSNEFYNNPT----YQHDFGSWSTFYPDSQKVHHCQMNSFESQF 105 (379)
Q Consensus 44 ~~~~~~~~~i~~a~~~g~~aiaitd~~~~~~~----~h~~~q~~p~~~~~~~k~~~~~~~g~e~~~ 105 (379)
.+..++.+++++|++.|.++||||||....|. ....+.+|++++..+++.+++.++|+|-..
T Consensus 31 Dg~~~~~elv~~A~~~Gl~~iaiTDH~~~~~~~~~~~~d~~~g~~~~~~~a~~~gi~vi~G~Ei~~ 96 (343)
T 3e38_A 31 DGLVWPTVRVDEAYRDGLDAISLTEHIEYRPHKQDVVSDHNRSFDLCREQAEKLGILLIKGSEITR 96 (343)
T ss_dssp TCSBCHHHHHHHHHHTTCSEECCEEESSCCTTTTTBCCCTTHHHHHHHHHHHHHTCEECCEEEEEC
T ss_pred CCCCCHHHHHHHHHHcCCCEEEECCCCcccccccccchhHHHHHHHHHHHHHhCCCEEEEEEEEEE
Confidence 45668899999999999999999997554321 013456777777777788999999999773
No 40
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=93.69 E-value=0.094 Score=55.14 Aligned_cols=134 Identities=16% Similarity=0.046 Sum_probs=85.3
Q ss_pred cEEEEEEeeCCCCCCCCCCCcEEEEceEEEEcCCCeEEeEEEEeecCCCCCCCCcchhhhcCCChHHHhCCCCHHHHHHH
Q 016965 137 YFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALLR 216 (379)
Q Consensus 137 ~fVV~D~ETTGl~g~~~~~deIIEIGAV~vd~~~g~i~d~F~~~VkP~~~~~Ls~~~~~LTGIT~~~V~~Ap~~~eVl~e 216 (379)
.-.++|+||+++ ++...+++-|+.. . . ++ ..+|.+. . .+++..
T Consensus 30 ~~~aldtE~~~~---~~~~a~Lvgisla--~-~-~~-----a~yIp~~------~-------------------~~~l~~ 72 (592)
T 3pv8_A 30 DKAALVVEVVEE---NYHDAPIVGIAVV--N-E-HG-----RFFLRPE------T-------------------ALADPQ 72 (592)
T ss_dssp SEEEEEEECCSS---SCTTCCCCEEEEE--E-T-TE-----EEEECHH------H-------------------HTTCHH
T ss_pred cCcEEEEEEcCC---ccCcccEEEEEEE--c-C-Cc-----eEEEccc------h-------------------hhHHHH
Confidence 457999999987 5677777666443 2 2 22 2344111 0 224567
Q ss_pred HHHHHhhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcCC-CCCCHHHHHHHc-CCCCC-
Q 016965 217 HDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGG-VRCNLKEAVEMA-GLAWQ- 293 (379)
Q Consensus 217 f~~fl~~~~Lv~hn~iVVh~~~FDlr~fL~~~~~~~gi~~P~~~~~~iDt~~l~r~l~~~-~~~rL~~l~~~~-gI~~~- 293 (379)
|..|+.+..+ ..|+|+..+|+ .+|. ++|+..+ ..+.||.-...-+-+. .+++|++++++| |....
T Consensus 73 Lk~lLed~~i----~KV~hn~K~Dl-~vL~----~~Gi~l~---g~~fDTmLAAYLL~p~~~~~~L~~La~~yLg~~l~~ 140 (592)
T 3pv8_A 73 FVAWLGDETK----KKSMFDSKRAA-VALK----WKGIELC---GVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRP 140 (592)
T ss_dssp HHHHHTCTTS----EEEESSHHHHH-HHHH----HTTCCCC---CEEEEHHHHHHHHCGGGCCCSHHHHHGGGTCCSSCC
T ss_pred HHHHHhCCCC----eEEEechHHHH-HHHH----HcCCCCC---CccchHHHHHHHcCCCCCCCCHHHHHHHHcCCCCch
Confidence 8888987532 35677889996 5664 5788753 3578997655544443 478999999876 43321
Q ss_pred -----C------------CCCCHHHHHHHHHHHHHHHHHhcCC
Q 016965 294 -----G------------RAHCGLDDAKNTARLLALLMHRGFK 319 (379)
Q Consensus 294 -----g------------~~HrAL~DA~aTA~Ll~~ll~~~~~ 319 (379)
| ..+.|..||.+|.+|+..|..+..+
T Consensus 141 ~ee~~gkg~~~~~~~~e~~~~YAa~DA~~l~~L~~~L~~~L~e 183 (592)
T 3pv8_A 141 DEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRR 183 (592)
T ss_dssp HHHHHCSGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 0134678999999999888765433
No 41
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=93.52 E-value=0.48 Score=47.82 Aligned_cols=135 Identities=10% Similarity=0.060 Sum_probs=81.4
Q ss_pred ccEEEEEEeeCCCCCCCCCCCcEEEEceEEEEcCCCeEEeEEEEeecCCCCCCCCcchhhhcCCChHHHhCCCCHHHHHH
Q 016965 136 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALL 215 (379)
Q Consensus 136 ~~fVV~D~ETTGl~g~~~~~deIIEIGAV~vd~~~g~i~d~F~~~VkP~~~~~Ls~~~~~LTGIT~~~V~~Ap~~~eVl~ 215 (379)
...|+||+||+++ ++...++.=| -+...++ ..+|.|.. +. +.+.
T Consensus 129 ~~~vavDtE~~~~---~~~~~~l~lI---QLa~~~~------~~lidpl~---l~---------------------~~l~ 172 (428)
T 3saf_A 129 CQEFAVNLEHHSY---RSFLGLTCLM---QISTRTE------DFIIDTLE---LR---------------------SDMY 172 (428)
T ss_dssp CSEEEEEEEEECT---TCSSCEEEEE---EEECSSC------EEEEETTT---TG---------------------GGGG
T ss_pred CCeEEEEEEecCC---CCCCCeEEEE---EEEeCCc------EEEEEecc---ch---------------------hhHH
Confidence 4789999999976 3444544322 2221221 24666652 21 1234
Q ss_pred HHHHHHhhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcCCCCCCHHHHHHH-cCCCCCC
Q 016965 216 RHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGGVRCNLKEAVEM-AGLAWQG 294 (379)
Q Consensus 216 ef~~fl~~~~Lv~hn~iVVh~~~FDlr~fL~~~~~~~gi~~P~~~~~~iDt~~l~r~l~~~~~~rL~~l~~~-~gI~~~g 294 (379)
.|.+++.+..+ ..|.|++.+|+ ..|. +..|+.. ..++||.... .+++...++|++++++ +|+....
T Consensus 173 ~L~~lL~dp~i----~KV~H~~k~Dl-~~L~---~~~Gi~~----~~~fDT~lAa-~lL~~~~~gL~~Lv~~~Lg~~l~K 239 (428)
T 3saf_A 173 ILNESLTDPAI----VKVFHGADSDI-EWLQ---KDFGLYV----VNMFDTHQAA-RLLNLGRHSLDHLLKLYCNVDSNK 239 (428)
T ss_dssp GGHHHHTCTTS----EEEESSCHHHH-HHHH---HHHCCCC----SSEEEHHHHH-HHTTCSCCSHHHHHHHHHCCCCCC
T ss_pred HHHHHHcCCCc----eEEEeehHHHH-HHHH---HHcCCCc----CceeechhHH-HHhCCCCCCHHHHHHHHcCCCCCc
Confidence 55667776532 24667779996 5553 2467753 2368997544 4556556799999875 5665421
Q ss_pred C---------------CCCHHHHHHHHHHHHHHHHHhcCC
Q 016965 295 R---------------AHCGLDDAKNTARLLALLMHRGFK 319 (379)
Q Consensus 295 ~---------------~HrAL~DA~aTA~Ll~~ll~~~~~ 319 (379)
. -+-|..||..+.+|+..|..+..+
T Consensus 240 ~~~~sdW~~rpLs~~q~~YAA~DA~~ll~L~~~L~~~L~~ 279 (428)
T 3saf_A 240 QYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWE 279 (428)
T ss_dssp TTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred cccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 133678999999999988776544
No 42
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=93.15 E-value=0.25 Score=49.88 Aligned_cols=104 Identities=13% Similarity=0.009 Sum_probs=65.7
Q ss_pred HHHhCCCCHHHHHHHHHHHHhhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCC-----------CCCceeehHHHH
Q 016965 202 IQVDRGVTLSEALLRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPP-----------YFNRWINLKVPF 270 (379)
Q Consensus 202 ~~V~~Ap~~~eVl~ef~~fl~~~~Lv~hn~iVVh~~~FDlr~fL~~~~~~~gi~~P~-----------~~~~~iDt~~l~ 270 (379)
+.+..+.-|..|++.+.+ .+ +.+|.||.-.|+ -++-+.+ .| ++|. ++..++||+-++
T Consensus 262 ~~l~~~~Gfr~V~~~L~~--s~------KpiVGHN~llDl-~~l~~~F--~~-pLP~~~~eFk~~i~~lFP~i~DTK~la 329 (430)
T 2a1r_A 262 EELNDAVGFSRVIHAIAN--SG------KLVIGHNMLLDV-MHTVHQF--YC-PLPADLSEFKEMTTCVFPRLLDTKLMA 329 (430)
T ss_dssp HHHHTTSBTHHHHHHHHH--HC------CEEEESSCHHHH-HHHHHHH--TC-CCCSSHHHHHHHHHHHCSSEEEHHHHH
T ss_pred HHHHhhhhHHHHHHHHHh--CC------CceEechhHHHH-HHHHHHh--cc-CCCCCHHHHHHHHHHHCCceeehHHhh
Confidence 346667777777766654 22 456666778897 6665543 33 3442 123578997766
Q ss_pred HHh-cC--CCCCCHHHHHHHcCCC--------------C----CCCCCCHHHHHHHHHHHHHHHHHhc
Q 016965 271 HEV-FG--GVRCNLKEAVEMAGLA--------------W----QGRAHCGLDDAKNTARLLALLMHRG 317 (379)
Q Consensus 271 r~l-~~--~~~~rL~~l~~~~gI~--------------~----~g~~HrAL~DA~aTA~Ll~~ll~~~ 317 (379)
... ++ ....+|..+.+.+.-. . .+..|.|-+||+.|+.+|.+|....
T Consensus 330 ~~~~~~~~~~~~sL~~l~~~l~~~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDa~mTG~vFi~l~~~l 397 (430)
T 2a1r_A 330 STQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYL 397 (430)
T ss_dssp TSTTTTTTCSCCSHHHHHHHTTSTTCCCCCEEECTTCCCC-----CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hccchhhccCCCCHHHHHHHHHhCCCCCCeeecCCCccccccCCCCccchHHHHHHHHHHHHHHHHHH
Confidence 432 11 1345899988866421 1 2456999999999999999998763
No 43
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=91.12 E-value=0.45 Score=49.75 Aligned_cols=133 Identities=9% Similarity=0.033 Sum_probs=76.8
Q ss_pred ccEEEEEEeeCCCCCCCCCCCcEEEEceEEEEcCCCeEEeEEEEeecCCCCCCCCcchhhhcCCChHHHhCCCCHHHHHH
Q 016965 136 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALL 215 (379)
Q Consensus 136 ~~fVV~D~ETTGl~g~~~~~deIIEIGAV~vd~~~g~i~d~F~~~VkP~~~~~Ls~~~~~LTGIT~~~V~~Ap~~~eVl~ 215 (379)
..++++|+||+. ++..+.++-||. ++. +. ...|.. .. . +.
T Consensus 6 ~~i~~~D~Et~~----d~~~~~~~~i~~--~~~--~~-~~~~~~-------------------~~--------~----l~ 45 (575)
T 2py5_A 6 RKMYSCAFETTT----KVEDCRVWAYGY--MNI--ED-HSEYKI-------------------GN--------S----LD 45 (575)
T ss_dssp CCEEEEEEEECC----BTTBCCEEEEEE--EES--SC-TTCEEE-------------------ES--------C----HH
T ss_pred ceEEEEEEEeec----CCCCCceEEEEE--EeC--Cc-eEEEEe-------------------ch--------h----HH
Confidence 468999999984 355677888875 331 11 111110 00 1 46
Q ss_pred HHHHHHhhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCC-----CCCC-------CCc----------------eeehH
Q 016965 216 RHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIW-----KPPY-------FNR----------------WINLK 267 (379)
Q Consensus 216 ef~~fl~~~~Lv~hn~iVVh~~~FDlr~fL~~~~~~~gi~-----~P~~-------~~~----------------~iDt~ 267 (379)
+|++|+.... ..+++||..||. .||.+.+...|+. .|.. ... .+|..
T Consensus 46 ~fi~~~~~~~----~~i~~hNl~FD~-~~l~~~~~~~~~~~~~~~~p~~~~~~i~r~~~~~~~~i~~~~~~k~~~~i~~~ 120 (575)
T 2py5_A 46 EFMAWVLKVQ----ADLYFHNLKFAG-AFIINWLERNGFKWSADGLPNTYNTIISRMGQWYMIDICLGYKGKRKIHTVIY 120 (575)
T ss_dssp HHHHHHHHHC----CEEEETTHHHHH-HHHHHHHHHTTCEECTTCCTTEEEEEEBTTCCEEEEEEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHcC----CEEEEEChhhhH-HHHHHHHHHhCcccccccccccccceeccCCeEEEEEEEEecCCCceEEEEEE
Confidence 7778886532 135667789996 7888888877521 1100 001 01221
Q ss_pred HHHHHhcCCCCCCHHHHHHHcCCCCCC---------------C---CCCHHHHHHHHHHHHHHHHHhc
Q 016965 268 VPFHEVFGGVRCNLKEAVEMAGLAWQG---------------R---AHCGLDDAKNTARLLALLMHRG 317 (379)
Q Consensus 268 ~l~r~l~~~~~~rL~~l~~~~gI~~~g---------------~---~HrAL~DA~aTA~Ll~~ll~~~ 317 (379)
..++. -+.+|+.+++.|+++... . .+-.+.|++.|++++...+...
T Consensus 121 Ds~~~----~~~SL~~~a~~f~~~~~K~~~py~~~~~~~~~~~~~~~~Y~~~Dv~ll~~i~~~~f~~~ 184 (575)
T 2py5_A 121 DSLKK----LPFPVKKIAKDFKLTVLKGDIDYHKERPVGYKITPEEYAYIKNDIQIIAEALLIQFKQG 184 (575)
T ss_dssp EHHHH----SCSCHHHHHHHTTCCCCSSCCCTTSCCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EhHhh----hhhhHHHHHHHhCCcccCCccCccccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11211 146999999999986210 0 0124789999999998776443
No 44
>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A
Probab=90.57 E-value=0.078 Score=48.64 Aligned_cols=61 Identities=8% Similarity=-0.004 Sum_probs=38.2
Q ss_pred cccCchhhhhhhhhcCCceeeeccCCCCCC--C-CCC-CCCCccccc----cccccc-Ccccccchhccc
Q 016965 45 IVHPGGDAGESIHQLSSEFVEYSNEFYNNP--T-YQH-DFGSWSTFY----PDSQKV-HHCQMNSFESQF 105 (379)
Q Consensus 45 ~~~~~~~~i~~a~~~g~~aiaitd~~~~~~--~-~h~-~~q~~p~~~----~~~~k~-~~~~~~g~e~~~ 105 (379)
+..+++++|++|++-|-++||||||..... . ..+ ....++.++ ...++. +++++.|+|..+
T Consensus 14 G~~~~ee~v~~A~~~Gl~~iaiTDH~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~i~i~~G~Ei~~ 83 (267)
T 2yxo_A 14 AEGHPEAYLEEARAKGLKGVVFTDHSPMPPWYDPESRMRLEALPFYLLALERVRERAQDLYVGIGLEADF 83 (267)
T ss_dssp CCSCHHHHHHHHHHTTCSEEEEEEECCCCTTSSGGGSCCGGGHHHHHHHHHHHHHHCTTSEEEEEEEEEC
T ss_pred CCCCHHHHHHHHHHcCCCEEEEcCCCCCCcccCccccccHHHHHHHHHHHHHHHHHhcCCcEEEEEEecc
Confidence 456788999999999999999999655420 0 000 000112111 122232 899999999874
No 45
>1m65_A Hypothetical protein YCDX; structural genomics, beta-alpha-barrel, metallo-enzyme, STRU function project, S2F, unknown function; 1.57A {Escherichia coli} SCOP: c.6.3.1 PDB: 1m68_A 1pb0_A
Probab=88.95 E-value=0.16 Score=45.96 Aligned_cols=53 Identities=6% Similarity=-0.115 Sum_probs=36.7
Q ss_pred ccCchhhhhhhhhcCCceeeeccCCCCCCCCCCCCCCccc-cc----ccc--cccCcccccchhccc
Q 016965 46 VHPGGDAGESIHQLSSEFVEYSNEFYNNPTYQHDFGSWST-FY----PDS--QKVHHCQMNSFESQF 105 (379)
Q Consensus 46 ~~~~~~~i~~a~~~g~~aiaitd~~~~~~~~h~~~q~~p~-~~----~~~--~k~~~~~~~g~e~~~ 105 (379)
..++.++|++|++-|-++|+||||... ...++. .| .+. +..+++++.|+|-.+
T Consensus 17 ~~~~~e~v~~A~~~Gl~~iaiTDH~~~-------~~~~~~~~~~~~~~~~~~~~~~i~v~~G~Ei~~ 76 (245)
T 1m65_A 17 YSTLSDYIAQAKQKGIKLFAITDHGPD-------MEDAPHHWHFINMRIWPRVVDGVGILRGIEANI 76 (245)
T ss_dssp CCCHHHHHHHHHHHTCCEEEEEEECTT-------STTCCCTHHHHGGGGSCSEETTEEEEEEEEEEB
T ss_pred CCcHHHHHHHHHHCCCCEEEECCCCCC-------CCCCcHHHHHHHHHHHHHhcCCCeEEEEEEeee
Confidence 346789999999999999999996541 222221 11 212 346889999999874
No 46
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=86.57 E-value=0.2 Score=52.25 Aligned_cols=61 Identities=3% Similarity=-0.158 Sum_probs=39.0
Q ss_pred cccCchhhhhhhhhcCCceeeeccCCCCCCCCCCC-CCCcccc---cccc-cc-cCcccccchhccc
Q 016965 45 IVHPGGDAGESIHQLSSEFVEYSNEFYNNPTYQHD-FGSWSTF---YPDS-QK-VHHCQMNSFESQF 105 (379)
Q Consensus 45 ~~~~~~~~i~~a~~~g~~aiaitd~~~~~~~~h~~-~q~~p~~---~~~~-~k-~~~~~~~g~e~~~ 105 (379)
+..++.+++++|+++|.++|+||||........+. ...++++ +.+. ++ .++++++|+|..+
T Consensus 350 G~~t~ee~v~~A~~~G~~~iaiTDH~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~i~i~~G~Ei~~ 416 (575)
T 3b0x_A 350 GQNTLEELWEAAKTMGYRYLAVTDHSPAVRVAGGPSPEEALKRVGEIRRFNETHGPPYLLAGAEVDI 416 (575)
T ss_dssp CSCCHHHHHHHHHHTTCSEEEEEEECTTTTTSSCSCHHHHHHHHHHHHHHHHHHCSSEEEEEEEEEB
T ss_pred CCCCHHHHHHHHHHCCCCEEEEcCCCCccccccCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEeecc
Confidence 34578899999999999999999966553110000 0012211 2222 23 4899999999885
No 47
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=82.95 E-value=2.4 Score=38.39 Aligned_cols=90 Identities=13% Similarity=-0.047 Sum_probs=61.2
Q ss_pred HHHHHHHHhhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcCC---CCCCHHHHHH-HcC
Q 016965 214 LLRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGG---VRCNLKEAVE-MAG 289 (379)
Q Consensus 214 l~ef~~fl~~~~Lv~hn~iVVh~~~FDlr~fL~~~~~~~gi~~P~~~~~~iDt~~l~r~l~~~---~~~rL~~l~~-~~g 289 (379)
+..|.+++.+..+ ..|.|....|+ ..|.+ ..|+.. ..++||..++...+|. .+.+|..+++ .+|
T Consensus 97 L~~L~~lL~d~~i----~Kvg~~~~~D~-~~L~~---~~g~~~----~~~~Dl~~la~~~lg~~~~~~~gL~~Lv~~~lg 164 (206)
T 1vk0_A 97 LKDLYRFFASKFV----TFVGVQIEEDL-DLLRE---NHGLVI----RNAINVGKLAAEARGTLVLEFLGTRELAHRVLW 164 (206)
T ss_dssp GHHHHHHHTCSSS----EEEESSCHHHH-HHHHH---HHCCCC----SSEEEHHHHHHHHHTCGGGGGCCHHHHHHHHHC
T ss_pred HHHHHHHhcCCCc----eEEEeccHHHH-HHHHH---hcCCCc----CCeeeHHHHHHHHcCCCCCCCccHHHHHHHHhC
Confidence 3457778887532 23455678997 55643 356642 4589998887776764 4679998886 467
Q ss_pred CCC-CC--------------CCCCHHHHHHHHHHHHHHHHH
Q 016965 290 LAW-QG--------------RAHCGLDDAKNTARLLALLMH 315 (379)
Q Consensus 290 I~~-~g--------------~~HrAL~DA~aTA~Ll~~ll~ 315 (379)
++. .. +-+-|..||+++.+|+.+|.+
T Consensus 165 ~~lK~k~~~~SdW~~pLs~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 165 SDLGQLDSIEAKWEKAGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp CCCHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCcccCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 766 10 235689999999999998864
No 48
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=82.49 E-value=0.47 Score=49.48 Aligned_cols=61 Identities=10% Similarity=-0.038 Sum_probs=38.8
Q ss_pred cccCchhhhhhhhhcCCceeeeccCCCCCCCCCC-CCCCcccccc---cccccCcccccchhccc
Q 016965 45 IVHPGGDAGESIHQLSSEFVEYSNEFYNNPTYQH-DFGSWSTFYP---DSQKVHHCQMNSFESQF 105 (379)
Q Consensus 45 ~~~~~~~~i~~a~~~g~~aiaitd~~~~~~~~h~-~~q~~p~~~~---~~~k~~~~~~~g~e~~~ 105 (379)
+..++.++|++|++.|.++|+||||+...+...+ ....|++++. ..++.+++++.|+|.++
T Consensus 340 G~~t~eemv~~A~~~Gl~~IaiTDH~~~~~~~~~~~~~~~~~~~~~i~~l~~~gi~il~GiEv~i 404 (578)
T 2w9m_A 340 GGASIREMAEATLTLGHEFLGTADHSRAAYYANGLTIERLREQLKEIRELQRAGLPIVAGSEVDI 404 (578)
T ss_dssp CSSCHHHHHHHHHHTTCSEEEECEEBTTCGGGTCBCHHHHHHHHHHHHHHHHTTCCEECEEEEEB
T ss_pred CCCCHHHHHHHHHHCCCeEEEEcCCCCccccccCCCHHHHHHHHHHHHHHHhcCCeEEEeeeecc
Confidence 4557899999999999999999996554211000 0011221111 12223999999999885
No 49
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=82.05 E-value=8.5 Score=37.45 Aligned_cols=92 Identities=13% Similarity=0.040 Sum_probs=60.7
Q ss_pred HHHHHHHhhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcCC-CCCCHHHHHHHc-CCCC
Q 016965 215 LRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGG-VRCNLKEAVEMA-GLAW 292 (379)
Q Consensus 215 ~ef~~fl~~~~Lv~hn~iVVh~~~FDlr~fL~~~~~~~gi~~P~~~~~~iDt~~l~r~l~~~-~~~rL~~l~~~~-gI~~ 292 (379)
..|.+++.+..+ ..|+|+..+|+ ..|.+ ..|+.. ..++||...+. +.+. .+++|++++++| |...
T Consensus 64 ~~L~~ll~d~~i----~Kv~h~~k~Dl-~~L~~---~~Gi~~----~~~fDt~lAa~-lL~~~~~~~L~~L~~~~l~~~l 130 (375)
T 1yt3_A 64 SPLKAILRDPSI----TKFLHAGSEDL-EVFLN---VFGELP----QPLIDTQILAA-FCGRPMSWGFASMVEEYSGVTL 130 (375)
T ss_dssp HHHHHHHHCTTS----EEEESSCHHHH-HHHHH---HHSSCC----SSEEEHHHHHH-HTTCCTTCCHHHHHHHHHCCCC
T ss_pred HHHHHHHcCCCc----eEEEeeHHHHH-HHHHH---HcCCCC----CcEEEcHHHHH-HcCCCCChhHHHHHHHHcCCCC
Confidence 457777877532 24667778996 56643 357753 24689975554 4454 478999999977 7654
Q ss_pred CCC---------C------CCHHHHHHHHHHHHHHHHHhcCC
Q 016965 293 QGR---------A------HCGLDDAKNTARLLALLMHRGFK 319 (379)
Q Consensus 293 ~g~---------~------HrAL~DA~aTA~Ll~~ll~~~~~ 319 (379)
... . +.|..||..+.+|+..|.++..+
T Consensus 131 ~K~~~~sdw~~rpL~~~q~~YAa~Da~~l~~L~~~L~~~L~~ 172 (375)
T 1yt3_A 131 DKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEA 172 (375)
T ss_dssp CCTTTTSCTTSSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred CCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 311 1 12567999999999998876544
No 50
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=76.09 E-value=7.1 Score=34.36 Aligned_cols=93 Identities=17% Similarity=0.000 Sum_probs=58.9
Q ss_pred HHHHHHHhhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcC-CCCCCHHHHHHHc-CCCC
Q 016965 215 LRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFG-GVRCNLKEAVEMA-GLAW 292 (379)
Q Consensus 215 ~ef~~fl~~~~Lv~hn~iVVh~~~FDlr~fL~~~~~~~gi~~P~~~~~~iDt~~l~r~l~~-~~~~rL~~l~~~~-gI~~ 292 (379)
..+.+++.+..+ ..|+|+...|+ ..|.+ ..|+.. .+ ++|+..++..+.+ ..+++|++++++| |...
T Consensus 86 ~~L~~lL~d~~i----~Kv~~~~k~D~-~~L~~---~~gi~~---~~-~fDlt~lAayll~~~~~~~L~~L~~~~l~~~~ 153 (208)
T 2e6m_A 86 QGLKMLLENKSI----KKAGVGIEGDQ-WKLLR---DFDVKL---ES-FVELTDVANEKLKCAETWSLNGLVKHVLGKQL 153 (208)
T ss_dssp HHHHHHHTCTTS----EEEESSHHHHH-HHHHH---HHCCCC---CS-EEEHHHHHHHHTTCCCCCCHHHHHHHHHSCBC
T ss_pred HHHHHHhcCCCc----eEEEEeeHHHH-HHHHH---HCCCCC---CC-EEEHHHHHHHHccCCCChhHHHHHHHHcCCCc
Confidence 356777877432 24556667885 45542 267753 23 7895556666655 3578999999887 6543
Q ss_pred C-----------C------CCCCHHHHHHHHHHHHHHHHHhcCC
Q 016965 293 Q-----------G------RAHCGLDDAKNTARLLALLMHRGFK 319 (379)
Q Consensus 293 ~-----------g------~~HrAL~DA~aTA~Ll~~ll~~~~~ 319 (379)
. . +-+.|..||.++.+|+..|.++..+
T Consensus 154 ~K~k~~~~s~W~~~~L~~~q~~YAa~Da~~~~~L~~~L~~~L~~ 197 (208)
T 2e6m_A 154 LKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKLGNLGDT 197 (208)
T ss_dssp CCCHHHHTSCTTSSSCCHHHHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred CCCCCeeeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 1 0 1123678999999999988776544
No 51
>2anu_A Hypothetical protein TM0559; predicted metal-dependent phosphoesterase (PHP famil structural genomics, joint center for structural genomics; 2.40A {Thermotoga maritima} SCOP: c.6.3.1
Probab=72.73 E-value=0.47 Score=43.70 Aligned_cols=26 Identities=12% Similarity=0.142 Sum_probs=23.2
Q ss_pred cccCchhhhhhhhhcCCceeeeccCC
Q 016965 45 IVHPGGDAGESIHQLSSEFVEYSNEF 70 (379)
Q Consensus 45 ~~~~~~~~i~~a~~~g~~aiaitd~~ 70 (379)
+..++++++++|++.|-+.|+||||.
T Consensus 33 g~~t~ee~v~~A~~~Gl~~i~iTDH~ 58 (255)
T 2anu_A 33 GHLPLGEVVDLFGKHGVDVVSITDHI 58 (255)
T ss_dssp CSSCHHHHHHHHHHTTCSEEEEEEEE
T ss_pred CCCCHHHHHHHHHHCCCCEEEEcCCC
Confidence 55678899999999999999999954
No 52
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=72.69 E-value=16 Score=36.30 Aligned_cols=93 Identities=12% Similarity=0.047 Sum_probs=60.6
Q ss_pred HHHHHHHhhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcCCCCCCHHHHHHHc-CCCCC
Q 016965 215 LRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGGVRCNLKEAVEMA-GLAWQ 293 (379)
Q Consensus 215 ~ef~~fl~~~~Lv~hn~iVVh~~~FDlr~fL~~~~~~~gi~~P~~~~~~iDt~~l~r~l~~~~~~rL~~l~~~~-gI~~~ 293 (379)
..|.+++.+..+ ..|+|++.+|+ ..|.+ ..|+.. .+ ++||...+ .+++..+++|+.++++| |....
T Consensus 149 ~~L~~lL~d~~i----~KV~h~~k~Dl-~~L~~---~~Gi~~---~~-~fDt~lAa-~LL~~~~~~L~~L~~~~lg~~l~ 215 (410)
T 2hbj_A 149 HILNEVFTNPSI----VKVFHGAFMDI-IWLQR---DLGLYV---VG-LFDTYHAS-KAIGLPRHSLAYLLENFANFKTS 215 (410)
T ss_dssp GGGHHHHTCTTS----EEEESSCHHHH-HHHHH---HHCCCC---SS-EEEHHHHH-HHHTCSCCSHHHHHHHHSCCCCC
T ss_pred HHHHHHHcCCCc----eEEEEehHHHH-HHHHH---HcCCCc---CC-EEEcHHHH-HHhCCCccCHHHHHHHHcCCCCC
Confidence 446677777432 24667778896 55543 357753 23 78997544 45554468999999887 65432
Q ss_pred CC---------C------CCHHHHHHHHHHHHHHHHHhcCCC
Q 016965 294 GR---------A------HCGLDDAKNTARLLALLMHRGFKF 320 (379)
Q Consensus 294 g~---------~------HrAL~DA~aTA~Ll~~ll~~~~~~ 320 (379)
.. . ..|..||.++.+|+..|..+..+.
T Consensus 216 K~~~~sdW~~rpL~~~q~~YAa~Da~~ll~L~~~L~~~L~~~ 257 (410)
T 2hbj_A 216 KKYQLADWRIRPLSKPMTAAARADTHFLLNIYDQLRNKLIES 257 (410)
T ss_dssp CTTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11 1 226789999999999988775443
No 53
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=62.59 E-value=28 Score=34.85 Aligned_cols=90 Identities=13% Similarity=0.015 Sum_probs=59.5
Q ss_pred HHHHHHHHhhcCCCCccEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcCCCCCCHHHHHHHc-CCCC
Q 016965 214 LLRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGGVRCNLKEAVEMA-GLAW 292 (379)
Q Consensus 214 l~ef~~fl~~~~Lv~hn~iVVh~~~FDlr~fL~~~~~~~gi~~P~~~~~~iDt~~l~r~l~~~~~~rL~~l~~~~-gI~~ 292 (379)
+..|.+++.+. ..|+|+...|+ ..|+ ..|+..+ .++||. ++..+++..+++|+.+++.| |...
T Consensus 84 l~~L~~lL~d~------~KV~h~~k~Dl-~~L~----~~gi~~~----~~fDt~-lAa~lL~~~~~gL~~L~~~~lg~~~ 147 (440)
T 3cym_A 84 WNDFNRAVGDA------VWILHDSLQDL-PGFD----ELGMEPQ----RLFDTE-IAARLLGLKRFGLAAVTEHFLGLTL 147 (440)
T ss_dssp HHHHHHHHTTC------EEEESSHHHHH-HHHH----HHTCCCC----EEEEHH-HHHHHTTCSSCSHHHHHHHHHCEEC
T ss_pred HHHHHHHHCCC------CEEEEcCHHHH-HHHH----HcCCcCC----ceehHH-HHHHHhCCCCCCHHHHHHHHhCCCc
Confidence 34577777763 24677778886 5553 4677532 578995 55566664578999999988 6432
Q ss_pred C---------CCC------CCHHHHHHHHHHHHHHHHHhcCC
Q 016965 293 Q---------GRA------HCGLDDAKNTARLLALLMHRGFK 319 (379)
Q Consensus 293 ~---------g~~------HrAL~DA~aTA~Ll~~ll~~~~~ 319 (379)
. .+. ..|..||.++.+|+..|..+..+
T Consensus 148 ~K~~~~sdw~~rpLs~~q~~YAa~Da~~Ll~L~~~L~~~L~~ 189 (440)
T 3cym_A 148 AKEHSAADWSYRPLPRDWRNYAALDVELLIELETKMRAELKR 189 (440)
T ss_dssp CCCCTTCCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred ccccccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111 22778999999999888776544
No 54
>3dcp_A Histidinol-phosphatase; HISK, histidine biosynthesis, NESG, LMR141, structural genomics, PSI-2, protein structure initiative; 2.10A {Listeria monocytogenes str}
Probab=51.00 E-value=1.9 Score=40.80 Aligned_cols=26 Identities=4% Similarity=-0.239 Sum_probs=22.4
Q ss_pred cCchhhhhhhhhcCCceeeeccCCCC
Q 016965 47 HPGGDAGESIHQLSSEFVEYSNEFYN 72 (379)
Q Consensus 47 ~~~~~~i~~a~~~g~~aiaitd~~~~ 72 (379)
.++.++|++|.+-|-+.|+||||.-.
T Consensus 18 ~~~~e~~~~A~~~G~~~i~~TdH~~~ 43 (283)
T 3dcp_A 18 DDVEEMVLKAIELDFDEYSIVEHAPL 43 (283)
T ss_dssp CCHHHHHHHHHHTTCCEEEEEEECCC
T ss_pred CCHHHHHHHHHHCCCCEEEEecCCCC
Confidence 36779999999999999999996543
No 55
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=44.71 E-value=40 Score=33.69 Aligned_cols=49 Identities=20% Similarity=0.166 Sum_probs=34.7
Q ss_pred ccEEEEEEeeCCCCCCCC----------------------CCCcEEEEceEEEEcCC---CeEEeEEEEeecCC
Q 016965 136 QYFVVIDFEATCDKDKNP----------------------YPQEIIEFPSVIVSSVT---GQLEACFQTYVRPT 184 (379)
Q Consensus 136 ~~fVV~D~ETTGl~g~~~----------------------~~deIIEIGAV~vd~~~---g~i~d~F~~~VkP~ 184 (379)
..||+||+|.||+..... ..-.||++|...++..+ +-....|+.++=|.
T Consensus 22 ~~fVAiD~Ef~Gi~~~~~~~~~~~~~~s~e~~Y~~lr~nv~~~~iiQlGlt~f~~~~~~~~~~~~~fNF~~FP~ 95 (430)
T 2a1r_A 22 ADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK 95 (430)
T ss_dssp CSEEEEEEEESCSCSSSCC-----CCCCHHHHHHHHHHHTTTBCEEEEEEEEEEEETTTTEEEEEEEEEEBCCC
T ss_pred CCEEEEeeeeccccCCCccccccccCCCHHHHHHHHHHHHhhcceeeEEEEEEeecCCCCceeEEEEEEEeccc
Confidence 489999999999942111 12469999999997321 23567888888764
No 56
>1v77_A PH1877P, hypothetical protein PH1877; RNAse P protein, TIM-barrel, RNA binding protein; 1.80A {Pyrococcus horikoshii} SCOP: c.6.3.2 PDB: 2czv_A*
Probab=38.40 E-value=8.9 Score=34.39 Aligned_cols=24 Identities=21% Similarity=0.090 Sum_probs=20.9
Q ss_pred cccCchhhhhhhhhcCCceeeeccCC
Q 016965 45 IVHPGGDAGESIHQLSSEFVEYSNEF 70 (379)
Q Consensus 45 ~~~~~~~~i~~a~~~g~~aiaitd~~ 70 (379)
++| +.+++++|+++ -+.|||||||
T Consensus 13 hvh-~~e~~~~A~~~-~~~i~itdH~ 36 (212)
T 1v77_A 13 DIR-DKEAYELAKEW-FDEVVVSIKF 36 (212)
T ss_dssp EEC-SHHHHHHHHHH-CSEEEEEEEE
T ss_pred CcC-HHHHHHHHHHH-hcEEEEeecc
Confidence 445 88999999999 9999999943
No 57
>2wje_A CPS4B, tyrosine-protein phosphatase CPSB; capsule biogenesis/degradation, manganese, hydrolase, exopolysaccharide synthesis; 1.90A {Streptococcus pneumoniae} PDB: 2wjd_A 2wjf_A 3qy8_A
Probab=26.86 E-value=19 Score=32.47 Aligned_cols=54 Identities=2% Similarity=-0.130 Sum_probs=33.0
Q ss_pred hhhhhhhhcCCceeeeccCCCCCCCCCCCCCCcccccccc------cccCcccccchhccc
Q 016965 51 DAGESIHQLSSEFVEYSNEFYNNPTYQHDFGSWSTFYPDS------QKVHHCQMNSFESQF 105 (379)
Q Consensus 51 ~~i~~a~~~g~~aiaitd~~~~~~~~h~~~q~~p~~~~~~------~k~~~~~~~g~e~~~ 105 (379)
+++++|.+-|-+.|++|||... +.+......+...+... ...++++..|+|.++
T Consensus 28 e~i~~A~~~Gi~~i~~TdH~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~i~i~~G~E~~~ 87 (247)
T 2wje_A 28 ALLAESYRQGVRTIVSTSHRRK-GMFETPEEKIAENFLQVREIAKEVASDLVIAYGAEIYY 87 (247)
T ss_dssp HHHHHHHHTTEEEEECCCEEBT-TTBCCCHHHHHHHHHHHHHHHHHHCTTCEEECCCEEEC
T ss_pred HHHHHHHHCCCCEEEECCCCCC-CCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEeeEEee
Confidence 6999999999999999996542 11111101111222211 123788899999885
Done!