Query 016966
Match_columns 379
No_of_seqs 228 out of 3088
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 04:25:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016966.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016966hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 4.7E-31 1E-35 263.2 11.6 336 1-376 435-788 (889)
2 PLN03210 Resistant to P. syrin 99.9 6.2E-23 1.3E-27 214.9 24.2 326 25-372 471-907 (1153)
3 PLN00113 leucine-rich repeat r 99.9 7.1E-22 1.5E-26 206.0 18.5 264 86-375 92-373 (968)
4 PLN00113 leucine-rich repeat r 99.9 8.9E-22 1.9E-26 205.2 17.4 268 85-375 116-421 (968)
5 KOG0444 Cytoskeletal regulator 99.8 1.3E-23 2.8E-28 193.6 -5.1 270 84-376 52-380 (1255)
6 KOG0444 Cytoskeletal regulator 99.8 4.9E-22 1.1E-26 183.3 -0.4 249 83-346 99-376 (1255)
7 KOG4194 Membrane glycoprotein 99.8 5.6E-21 1.2E-25 174.9 0.9 245 109-377 173-435 (873)
8 KOG4194 Membrane glycoprotein 99.8 1.4E-19 3.1E-24 165.8 4.6 280 84-375 99-409 (873)
9 KOG0472 Leucine-rich repeat pr 99.7 6.4E-20 1.4E-24 161.1 -2.4 269 86-374 182-544 (565)
10 PLN03210 Resistant to P. syrin 99.7 7.3E-17 1.6E-21 169.5 18.4 281 86-376 531-843 (1153)
11 KOG0472 Leucine-rich repeat pr 99.7 1.2E-19 2.5E-24 159.5 -11.1 213 140-372 90-311 (565)
12 KOG0617 Ras suppressor protein 99.6 1.2E-17 2.6E-22 130.7 -5.1 163 100-284 24-192 (264)
13 KOG0617 Ras suppressor protein 99.6 2.3E-17 4.9E-22 129.2 -5.8 143 140-294 32-180 (264)
14 PRK15370 E3 ubiquitin-protein 99.6 1.7E-14 3.6E-19 143.0 12.8 240 88-371 179-428 (754)
15 PRK15387 E3 ubiquitin-protein 99.5 2.4E-13 5.3E-18 134.2 17.8 234 85-373 220-460 (788)
16 KOG0618 Serine/threonine phosp 99.5 1.9E-15 4.1E-20 145.8 -2.6 258 87-370 219-488 (1081)
17 cd00116 LRR_RI Leucine-rich re 99.4 1.6E-13 3.4E-18 125.3 5.0 259 85-370 21-319 (319)
18 PRK15370 E3 ubiquitin-protein 99.4 1.6E-12 3.5E-17 129.0 12.3 219 110-374 179-404 (754)
19 cd00116 LRR_RI Leucine-rich re 99.4 2.5E-13 5.5E-18 123.9 5.3 235 107-373 21-293 (319)
20 PRK15387 E3 ubiquitin-protein 99.4 3.1E-12 6.7E-17 126.5 13.0 231 89-376 203-440 (788)
21 KOG0618 Serine/threonine phosp 99.3 1.3E-13 2.9E-18 133.3 -1.2 250 88-375 46-327 (1081)
22 KOG4237 Extracellular matrix p 99.3 2.5E-13 5.5E-18 119.8 -0.0 228 111-370 69-358 (498)
23 KOG0532 Leucine-rich repeat (L 99.3 2.4E-13 5.1E-18 125.1 -3.2 182 92-297 55-244 (722)
24 PF14580 LRR_9: Leucine-rich r 99.2 8.6E-12 1.9E-16 101.6 3.9 104 140-243 18-125 (175)
25 PF14580 LRR_9: Leucine-rich r 99.1 3E-11 6.5E-16 98.4 4.1 127 157-294 15-147 (175)
26 KOG3207 Beta-tubulin folding c 99.1 8.5E-12 1.9E-16 111.6 0.7 40 329-371 300-339 (505)
27 KOG4237 Extracellular matrix p 99.1 8.2E-12 1.8E-16 110.4 0.4 66 76-150 57-124 (498)
28 KOG3207 Beta-tubulin folding c 99.1 1.3E-11 2.9E-16 110.4 -0.2 201 84-294 118-333 (505)
29 KOG1259 Nischarin, modulator o 99.0 1.6E-10 3.6E-15 98.9 4.2 217 139-374 180-415 (490)
30 KOG4658 Apoptotic ATPase [Sign 99.0 3E-10 6.6E-15 114.8 5.1 104 84-195 542-654 (889)
31 KOG1259 Nischarin, modulator o 99.0 1.5E-10 3.4E-15 99.0 1.6 130 141-282 284-416 (490)
32 KOG0532 Leucine-rich repeat (L 99.0 2.9E-11 6.4E-16 111.6 -3.2 175 86-284 74-253 (722)
33 KOG1909 Ran GTPase-activating 98.8 6.5E-10 1.4E-14 97.1 0.6 189 158-370 89-310 (382)
34 COG4886 Leucine-rich repeat (L 98.8 4.5E-09 9.8E-14 98.9 4.9 99 141-241 116-219 (394)
35 COG4886 Leucine-rich repeat (L 98.8 5.6E-09 1.2E-13 98.2 5.0 182 92-295 98-285 (394)
36 KOG1909 Ran GTPase-activating 98.7 6.2E-09 1.4E-13 91.1 1.2 181 87-277 92-310 (382)
37 PLN03150 hypothetical protein; 98.6 1.4E-07 2.9E-12 93.5 8.9 106 162-278 419-528 (623)
38 KOG2120 SCF ubiquitin ligase, 98.5 1.2E-08 2.5E-13 87.6 -1.7 37 329-369 337-374 (419)
39 PLN03150 hypothetical protein; 98.5 4.9E-07 1.1E-11 89.6 9.1 103 184-297 419-525 (623)
40 KOG2120 SCF ubiquitin ligase, 98.5 3E-09 6.6E-14 91.1 -6.1 172 87-275 185-373 (419)
41 PF13855 LRR_8: Leucine rich r 98.4 4.5E-07 9.8E-12 60.6 4.0 58 184-242 2-60 (61)
42 PF13855 LRR_8: Leucine rich r 98.4 3.5E-07 7.6E-12 61.2 3.4 57 161-217 1-60 (61)
43 KOG1859 Leucine-rich repeat pr 98.4 2.9E-09 6.3E-14 101.3 -9.4 174 82-278 104-292 (1096)
44 KOG0531 Protein phosphatase 1, 98.2 1.7E-07 3.8E-12 88.5 -1.2 104 139-244 93-199 (414)
45 KOG2982 Uncharacterized conser 98.2 6E-07 1.3E-11 77.3 1.2 176 88-278 46-262 (418)
46 COG5238 RNA1 Ran GTPase-activa 98.2 9.2E-07 2E-11 75.2 2.1 187 177-372 86-317 (388)
47 KOG3665 ZYG-1-like serine/thre 98.2 1.2E-06 2.6E-11 86.9 3.2 131 109-245 122-264 (699)
48 KOG2982 Uncharacterized conser 98.1 1.9E-06 4.1E-11 74.3 2.8 79 138-216 68-156 (418)
49 KOG3665 ZYG-1-like serine/thre 98.1 8.3E-07 1.8E-11 88.0 0.7 147 86-239 121-283 (699)
50 KOG0531 Protein phosphatase 1, 98.1 5.5E-07 1.2E-11 85.1 -0.8 170 84-278 92-268 (414)
51 PF12799 LRR_4: Leucine Rich r 98.1 5.8E-06 1.3E-10 50.8 3.9 38 162-199 2-40 (44)
52 KOG1644 U2-associated snRNP A' 98.0 1.8E-05 3.9E-10 64.6 6.1 84 184-278 43-126 (233)
53 PRK15386 type III secretion pr 97.9 6E-05 1.3E-09 69.4 9.3 72 158-240 49-121 (426)
54 KOG1859 Leucine-rich repeat pr 97.9 4.9E-07 1.1E-11 86.6 -4.7 98 184-295 165-262 (1096)
55 PF12799 LRR_4: Leucine Rich r 97.8 2.8E-05 6E-10 47.8 4.0 36 183-218 1-36 (44)
56 PRK15386 type III secretion pr 97.7 0.00022 4.9E-09 65.7 9.4 128 138-296 49-186 (426)
57 COG5238 RNA1 Ran GTPase-activa 97.7 9E-05 2E-09 63.4 5.9 143 158-300 27-198 (388)
58 KOG4341 F-box protein containi 97.7 3.1E-06 6.7E-11 76.2 -3.2 40 330-372 401-440 (483)
59 KOG4579 Leucine-rich repeat (L 97.7 4.8E-06 1E-10 63.6 -1.8 94 178-284 48-142 (177)
60 KOG1644 U2-associated snRNP A' 97.6 0.00014 3.1E-09 59.5 6.0 97 88-192 43-149 (233)
61 KOG2123 Uncharacterized conser 97.4 6.7E-06 1.4E-10 70.3 -4.2 98 140-237 18-123 (388)
62 KOG2123 Uncharacterized conser 97.3 1.2E-05 2.6E-10 68.9 -3.8 96 107-212 17-123 (388)
63 KOG4341 F-box protein containi 97.3 1.7E-05 3.7E-10 71.6 -3.2 263 84-364 161-458 (483)
64 KOG2739 Leucine-rich acidic nu 97.2 0.00012 2.7E-09 62.2 1.1 82 161-244 43-129 (260)
65 KOG4579 Leucine-rich repeat (L 97.1 4.2E-05 9E-10 58.6 -2.3 104 89-200 29-140 (177)
66 KOG1947 Leucine rich repeat pr 97.1 0.00011 2.5E-09 70.9 0.0 162 107-278 186-375 (482)
67 KOG2739 Leucine-rich acidic nu 97.1 0.00028 6.2E-09 60.1 1.9 103 181-294 41-150 (260)
68 PF13306 LRR_5: Leucine rich r 96.5 0.015 3.2E-07 45.0 8.0 102 133-239 4-111 (129)
69 PF00560 LRR_1: Leucine Rich R 96.0 0.0035 7.7E-08 32.0 1.0 21 184-204 1-21 (22)
70 KOG1947 Leucine rich repeat pr 95.6 0.0025 5.4E-08 61.5 -0.6 126 160-294 187-328 (482)
71 PF13306 LRR_5: Leucine rich r 95.1 0.1 2.2E-06 40.2 7.1 84 129-215 23-112 (129)
72 PF13504 LRR_7: Leucine rich r 94.9 0.019 4E-07 27.2 1.4 16 184-199 2-17 (17)
73 KOG3864 Uncharacterized conser 91.5 0.035 7.6E-07 45.8 -1.2 74 142-215 102-185 (221)
74 smart00370 LRR Leucine-rich re 91.1 0.2 4.4E-06 26.4 2.0 21 182-202 1-21 (26)
75 smart00369 LRR_TYP Leucine-ric 91.1 0.2 4.4E-06 26.4 2.0 21 182-202 1-21 (26)
76 KOG3864 Uncharacterized conser 91.0 0.054 1.2E-06 44.7 -0.5 78 162-239 102-184 (221)
77 KOG4308 LRR-containing protein 88.9 0.0054 1.2E-07 58.7 -9.1 180 89-278 89-303 (478)
78 smart00367 LRR_CC Leucine-rich 85.8 0.59 1.3E-05 24.7 1.5 16 357-372 1-16 (26)
79 KOG0473 Leucine-rich repeat pr 85.7 0.018 3.8E-07 48.6 -6.6 75 141-215 42-120 (326)
80 KOG4308 LRR-containing protein 85.0 0.01 2.2E-07 56.8 -9.6 178 111-298 89-301 (478)
81 smart00364 LRR_BAC Leucine-ric 81.5 0.91 2E-05 24.0 1.1 18 183-200 2-19 (26)
82 KOG0473 Leucine-rich repeat pr 77.0 0.063 1.4E-06 45.4 -6.3 87 156-244 37-124 (326)
83 PF13516 LRR_6: Leucine Rich r 71.3 2.1 4.5E-05 21.9 0.8 14 183-196 2-15 (24)
84 smart00365 LRR_SD22 Leucine-ri 69.6 3.8 8.3E-05 21.7 1.6 16 183-198 2-17 (26)
85 smart00368 LRR_RI Leucine rich 49.2 12 0.00026 20.0 1.3 13 162-174 3-15 (28)
86 KOG3763 mRNA export factor TAP 45.5 11 0.00024 36.4 1.3 62 183-245 218-284 (585)
87 PF14162 YozD: YozD-like prote 36.8 36 0.00077 21.2 2.1 11 25-35 17-27 (57)
88 KOG3763 mRNA export factor TAP 36.5 29 0.00064 33.7 2.6 12 330-341 270-281 (585)
89 COG3432 Predicted transcriptio 31.0 1.6E+02 0.0035 21.3 5.1 38 20-57 46-83 (95)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.97 E-value=4.7e-31 Score=263.19 Aligned_cols=336 Identities=25% Similarity=0.311 Sum_probs=232.5
Q ss_pred CcccccccccccchHHHHHHHHHHHHHHHHHhccceeccc-cccCeEeechhHHHHHHHHhh-----cccceEEecCCcc
Q 016966 1 MCGMGLGLFQGVNKMEAARNRVHALVRTLKASCMLLDHES-EKEELFSMHDVVRHVAISIAS-----TKRNVFTATNEQV 74 (379)
Q Consensus 1 ~~Wiaeg~i~~~~~~e~~~~~~~~~~~~L~~~~l~~~~~~-~~~~~~~~hdl~~d~~~~~~~-----~~~~~~~~~~~~~ 74 (379)
.||||||||++....+.|++.+++|+.+|++++|++.... ++..+|+|||+|||+|.++|+ +++ ..+..+.
T Consensus 435 ~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~--~iv~~~~- 511 (889)
T KOG4658|consen 435 EYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEEN--QIVSDGV- 511 (889)
T ss_pred HHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccc--eEEECCc-
Confidence 3899999999876777899999999999999999998764 357899999999999999999 666 3333332
Q ss_pred ccCcCCCCCCccCCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC--
Q 016966 75 DGCREWSDGSTIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI-- 152 (379)
Q Consensus 75 ~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-- 152 (379)
++.+.+....+..+|++++.++.+..++....+++|++|.+.+|.. | ...++..+|..|+.|++||+++|.
T Consensus 512 -~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~---~---l~~is~~ff~~m~~LrVLDLs~~~~l 584 (889)
T KOG4658|consen 512 -GLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSD---W---LLEISGEFFRSLPLLRVLDLSGNSSL 584 (889)
T ss_pred -CccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecch---h---hhhcCHHHHhhCcceEEEECCCCCcc
Confidence 4445566778899999999999998888888888999999999542 1 567888889999999999999887
Q ss_pred --CCccccCCCCCcEEEeecCCCCC-cccccCcCCCcEEEeeCCc-CcccchhhcCCCCCCEEeccCCCC-CcccChhhh
Q 016966 153 --LPSSLGLLSNLRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSD-IVKLPVEVGELTWLKLLDLRDCCF-LKVIPPNIL 227 (379)
Q Consensus 153 --lp~~i~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~-l~~lp~~~~~l~~L~~L~l~~~~~-~~~~~~~~l 227 (379)
+|.+|+.|.+||||+++++.+.. |..++++.+|.+|++..+. +..+|.....|++||+|.+..... ....-...+
T Consensus 585 ~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el 664 (889)
T KOG4658|consen 585 SKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKEL 664 (889)
T ss_pred CcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhh
Confidence 99999999999999999999999 9999999999999999984 445555566699999999876431 111111113
Q ss_pred CCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcE----EEeeccCCCCCCccc-cccCCcEEEEEeeccccc
Q 016966 228 SKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTS----LEVHVRDVSSLPRGL-LLEKLERYSIYIRRYFSR 302 (379)
Q Consensus 228 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~----L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~ 302 (379)
.++.+|+.+.+..... .....+..++.|++ +.+.++.....+... .+++|+.|.+..+.....
T Consensus 665 ~~Le~L~~ls~~~~s~------------~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~ 732 (889)
T KOG4658|consen 665 ENLEHLENLSITISSV------------LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEI 732 (889)
T ss_pred hcccchhhheeecchh------------HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchh
Confidence 4444455444432221 02233334444442 332233333233333 678888888855544311
Q ss_pred CcccccceEEEEeCCcccchHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCCccCCCC
Q 016966 303 KTGIWCRQFRVELNNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLALNPAE 376 (379)
Q Consensus 303 ~~~~~~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 376 (379)
.. .|.... .... .|+++..+.+.+|. ..+...+..+ .|+|+.|.+..|+.++.|..
T Consensus 733 ~~-~~~~~~--------~~~~----~f~~l~~~~~~~~~--~~r~l~~~~f---~~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 733 VI-EWEESL--------IVLL----CFPNLSKVSILNCH--MLRDLTWLLF---APHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred hc-cccccc--------chhh----hHHHHHHHHhhccc--cccccchhhc---cCcccEEEEecccccccCCC
Confidence 11 010000 0000 14566666666666 5666655544 46777777777766665543
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=6.2e-23 Score=214.89 Aligned_cols=326 Identities=18% Similarity=0.221 Sum_probs=182.9
Q ss_pred HHHHHHHhccceeccccccCeEeechhHHHHHHHHhhccc------ceEEec----------CCc--ccc-------CcC
Q 016966 25 LVRTLKASCMLLDHESEKEELFSMHDVVRHVAISIASTKR------NVFTAT----------NEQ--VDG-------CRE 79 (379)
Q Consensus 25 ~~~~L~~~~l~~~~~~~~~~~~~~hdl~~d~~~~~~~~~~------~~~~~~----------~~~--~~~-------~~~ 79 (379)
.++.|++++|++... ..+.|||++|+||+++++++. .+.... .+. ..+ +.+
T Consensus 471 ~l~~L~~ksLi~~~~----~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~ 546 (1153)
T PLN03210 471 GLKNLVDKSLIHVRE----DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDE 546 (1153)
T ss_pred ChHHHHhcCCEEEcC----CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccce
Confidence 478899999998753 479999999999999997653 111100 000 000 000
Q ss_pred C----CCCCccCCccEEEEeCCCC-------CCCCC-CCCC-CCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEE
Q 016966 80 W----SDGSTIKHFTSIVLHGIKP-------NLLPE-VLEC-PQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVV 146 (379)
Q Consensus 80 ~----~~~~~~~~l~~L~l~~~~~-------~~~~~-~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L 146 (379)
. ..+..+++++.|.+..+.. ..+|. +..+ .+||.|.+.++. ...+|..+ .+.+|+.|
T Consensus 547 ~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~--------l~~lP~~f--~~~~L~~L 616 (1153)
T PLN03210 547 LHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP--------LRCMPSNF--RPENLVKL 616 (1153)
T ss_pred eeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC--------CCCCCCcC--CccCCcEE
Confidence 0 0122344555555543321 01221 1122 235555555422 33344332 34555566
Q ss_pred EecCCC---CCccccCCCCCcEEEeecCC-CCCcccccCcCCCcEEEeeCC-cCcccchhhcCCCCCCEEeccCCCCCcc
Q 016966 147 NLTDMI---LPSSLGLLSNLRTLSLCSCG-LPDISFVGYLKKLEILCLRGS-DIVKLPVEVGELTWLKLLDLRDCCFLKV 221 (379)
Q Consensus 147 ~l~~~~---lp~~i~~l~~L~~L~l~~~~-l~~~~~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L~l~~~~~~~~ 221 (379)
++.++. +|..+..+++|++|+++++. +..++.++.+++|++|++++| .+..+|..++.+++|++|++++|.....
T Consensus 617 ~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~ 696 (1153)
T PLN03210 617 QMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEI 696 (1153)
T ss_pred ECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCc
Confidence 665555 45555555556666665544 333344555555566665555 3445555555555555555555555555
Q ss_pred cChhhhCCCCCCcEEEecCC---------------------CCcChhhhh------------------------------
Q 016966 222 IPPNILSKLSHLEELYIGRE---------------------SFVDWEEEV------------------------------ 250 (379)
Q Consensus 222 ~~~~~l~~l~~L~~L~l~~~---------------------~~~~~~~~~------------------------------ 250 (379)
+|... ++++|+.|.+++| .+...+...
T Consensus 697 Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~ 774 (1153)
T PLN03210 697 LPTGI--NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMT 774 (1153)
T ss_pred cCCcC--CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhh
Confidence 55431 3444444444433 322211000
Q ss_pred -------------hcccccchHhhcCCCCCcEEEeecc-CCCCCCccccccCCcEEEEEeecccccCcccc-cceEEEEe
Q 016966 251 -------------EGVKNASLEELKHLPNLTSLEVHVR-DVSSLPRGLLLEKLERYSIYIRRYFSRKTGIW-CRQFRVEL 315 (379)
Q Consensus 251 -------------~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~l 315 (379)
......++..++.+++|+.|++++| .+..+|....+++|+.|+++.+..... ++.. .+...|++
T Consensus 775 ~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~-~p~~~~nL~~L~L 853 (1153)
T PLN03210 775 MLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRT-FPDISTNISDLNL 853 (1153)
T ss_pred hccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccc-ccccccccCEeEC
Confidence 0011124566777777888888754 455777666677788887754433221 2222 23447788
Q ss_pred --CCcccchHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCCcc
Q 016966 316 --NNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLAL 372 (379)
Q Consensus 316 --~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~ 372 (379)
+....+|.++..+ ++|+.|++.+|+ .++.++..... +++|+.|++++|+.++
T Consensus 854 s~n~i~~iP~si~~l-~~L~~L~L~~C~--~L~~l~~~~~~--L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 854 SRTGIEEVPWWIEKF-SNLSFLDMNGCN--NLQRVSLNISK--LKHLETVDFSDCGALT 907 (1153)
T ss_pred CCCCCccChHHHhcC-CCCCEEECCCCC--CcCccCccccc--ccCCCeeecCCCcccc
Confidence 4445588888874 999999999999 89998876544 8999999999998876
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.88 E-value=7.1e-22 Score=205.96 Aligned_cols=264 Identities=21% Similarity=0.243 Sum_probs=146.0
Q ss_pred cCCccEEEEeCCCC-CCCCCC-C-CCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCcccc
Q 016966 86 IKHFTSIVLHGIKP-NLLPEV-L-ECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLG 158 (379)
Q Consensus 86 ~~~l~~L~l~~~~~-~~~~~~-~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~ 158 (379)
+++++.|++++|.+ ..+|.. . .+++|+.|++++|.+. ..+|. ..+++|++|++++|. .|..++
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~-------~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~ 161 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFT-------GSIPR---GSIPNLETLDLSNNMLSGEIPNDIG 161 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccc-------cccCc---cccCCCCEEECcCCcccccCChHHh
Confidence 44555555555544 234331 1 4455555555554331 12222 234555555555554 455556
Q ss_pred CCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCc-ccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcE
Q 016966 159 LLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIV-KLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEE 235 (379)
Q Consensus 159 ~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 235 (379)
.+++|++|++++|.+.. |..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++
T Consensus 162 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~ 240 (968)
T PLN00113 162 SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNH 240 (968)
T ss_pred cCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCE
Confidence 66666666666665543 455566666666666666554 45555666666666666665555555554 466666666
Q ss_pred EEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCC-CCCccc-cccCCcEEEEEeecccccC---cccccce
Q 016966 236 LYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVS-SLPRGL-LLEKLERYSIYIRRYFSRK---TGIWCRQ 310 (379)
Q Consensus 236 L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~~~~---~~~~~~~ 310 (379)
|++++|.+.+. .+..++.+++|+.|+++.|.+. .+|..+ .+++|+.|+++.+...... +..+++.
T Consensus 241 L~L~~n~l~~~----------~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 310 (968)
T PLN00113 241 LDLVYNNLTGP----------IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNL 310 (968)
T ss_pred EECcCceeccc----------cChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCC
Confidence 66666655432 3556667777777777766665 455544 5667777776544332111 1223344
Q ss_pred EEEEe-CCcc--cchHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCCccCCC
Q 016966 311 FRVEL-NNKI--CLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLALNPA 375 (379)
Q Consensus 311 ~~L~l-~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 375 (379)
..|.+ .+.. ..|..+..+ ++|+.|++.+|. ....+|..+.. +++|+.|++++|......|
T Consensus 311 ~~L~l~~n~~~~~~~~~~~~l-~~L~~L~L~~n~--l~~~~p~~l~~--~~~L~~L~Ls~n~l~~~~p 373 (968)
T PLN00113 311 EILHLFSNNFTGKIPVALTSL-PRLQVLQLWSNK--FSGEIPKNLGK--HNNLTVLDLSTNNLTGEIP 373 (968)
T ss_pred cEEECCCCccCCcCChhHhcC-CCCCEEECcCCC--CcCcCChHHhC--CCCCcEEECCCCeeEeeCC
Confidence 46666 2222 245555554 777777777776 33355554433 7778888887777654433
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.88 E-value=8.9e-22 Score=205.23 Aligned_cols=268 Identities=22% Similarity=0.254 Sum_probs=176.5
Q ss_pred ccCCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccccCC
Q 016966 85 TIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGLL 160 (379)
Q Consensus 85 ~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~l 160 (379)
.++++++|++++|.+....+...+++|++|++++|.+ ...+|.. +..+++|++|++++|. +|..++++
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~-------~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l 187 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNML-------SGEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNL 187 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCCcc-------cccCChH-HhcCCCCCEEECccCcccccCChhhhhC
Confidence 5678999999999884333335688899999999765 3345544 5788999999998887 77788889
Q ss_pred CCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCc-ccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEE
Q 016966 161 SNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIV-KLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELY 237 (379)
Q Consensus 161 ~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 237 (379)
++|++|++++|.+.. |..++++++|++|++++|.+. .+|..++++++|++|++++|...+.+|.. ++++++|+.|+
T Consensus 188 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~ 266 (968)
T PLN00113 188 TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLF 266 (968)
T ss_pred cCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEE
Confidence 999999999988776 788888899999999988877 67888888999999999888777777776 78888888888
Q ss_pred ecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCC-CCCccc-cccCCcEEEEEeecccccC---cccccceEE
Q 016966 238 IGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVS-SLPRGL-LLEKLERYSIYIRRYFSRK---TGIWCRQFR 312 (379)
Q Consensus 238 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~~~~---~~~~~~~~~ 312 (379)
+++|.+.+. .+..+..+++|+.|++++|.+. .+|..+ .+++|+.|++..+...... ...+++...
T Consensus 267 L~~n~l~~~----------~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 336 (968)
T PLN00113 267 LYQNKLSGP----------IPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQV 336 (968)
T ss_pred CcCCeeecc----------CchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCE
Confidence 888877643 2445555566666666655554 344333 4555555555433322111 112222334
Q ss_pred EEe-CCcc--cchHHHHHH-----------------------hcccceeeccccccccccccccccccccCCCCcEEEec
Q 016966 313 VEL-NNKI--CLKDSLIVQ-----------------------LQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLE 366 (379)
Q Consensus 313 L~l-~~~~--~~~~~~~~~-----------------------~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~ 366 (379)
|.+ .+.. .+|..+..+ +++|+.|++.+|. ....+|..+. .+++|+.|++.
T Consensus 337 L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~--l~~~~p~~~~--~~~~L~~L~L~ 412 (968)
T PLN00113 337 LQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS--LEGEIPKSLG--ACRSLRRVRLQ 412 (968)
T ss_pred EECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCE--ecccCCHHHh--CCCCCCEEECc
Confidence 444 1111 133333332 1445555555554 2223333332 37788888888
Q ss_pred CCCCccCCC
Q 016966 367 GSDLALNPA 375 (379)
Q Consensus 367 ~c~~l~~~~ 375 (379)
+|.....+|
T Consensus 413 ~n~l~~~~p 421 (968)
T PLN00113 413 DNSFSGELP 421 (968)
T ss_pred CCEeeeECC
Confidence 887765444
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=1.3e-23 Score=193.56 Aligned_cols=270 Identities=19% Similarity=0.260 Sum_probs=183.1
Q ss_pred CccCCccEEEEeCCCCCCC-CCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccC
Q 016966 84 STIKHFTSIVLHGIKPNLL-PEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGL 159 (379)
Q Consensus 84 ~~~~~l~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~ 159 (379)
..+.++.+|++.+|.+..+ ..+..++.||++++..|.+. ...+|+++| .+..|.+|||++|. .|..+.+
T Consensus 52 ~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LK------nsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~ 124 (1255)
T KOG0444|consen 52 SRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLK------NSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEY 124 (1255)
T ss_pred HHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccc------cCCCCchhc-ccccceeeecchhhhhhcchhhhh
Confidence 4567888999999888444 45668999999999998765 346888887 58999999999998 8888888
Q ss_pred CCCCcEEEeecCCCCC-c-ccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEE
Q 016966 160 LSNLRTLSLCSCGLPD-I-SFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELY 237 (379)
Q Consensus 160 l~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 237 (379)
-+++-+|++++|.|.. | +-+-+++.|-+|++++|++..+|+.+.++.+|++|.+++|.....--.. +..+++|++|.
T Consensus 125 AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ-LPsmtsL~vLh 203 (1255)
T KOG0444|consen 125 AKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQ-LPSMTSLSVLH 203 (1255)
T ss_pred hcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhc-Cccchhhhhhh
Confidence 8999999999999988 6 4456889999999999999999999999999999999987543222222 45566677777
Q ss_pred ecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccc-cccCCcEEEEEeeccc--ccCcccccceE---
Q 016966 238 IGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGL-LLEKLERYSIYIRRYF--SRKTGIWCRQF--- 311 (379)
Q Consensus 238 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~--~~~~~~~~~~~--- 311 (379)
+++..-+-.. +|..+..+.+|+.+++++|++..+|.-+ .+++|..|+++.+... ....+.|.+..
T Consensus 204 ms~TqRTl~N---------~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLN 274 (1255)
T KOG0444|consen 204 MSNTQRTLDN---------IPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLN 274 (1255)
T ss_pred cccccchhhc---------CCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhc
Confidence 7765443322 4555555666666666666666555544 4555555555443322 11112222211
Q ss_pred --------------------EEEe--------------------------CCccc-chHHHHHHhcccceeecccccccc
Q 016966 312 --------------------RVEL--------------------------NNKIC-LKDSLIVQLQRIEDLELSELQEQD 344 (379)
Q Consensus 312 --------------------~L~l--------------------------~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~ 344 (379)
+|.+ ++... .|.++.++ .+|+.|.|..|+
T Consensus 275 lSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC-~kL~kL~L~~Nr--- 350 (1255)
T KOG0444|consen 275 LSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRC-VKLQKLKLDHNR--- 350 (1255)
T ss_pred cccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhh-HHHHHhcccccc---
Confidence 1111 22222 45555554 666666666665
Q ss_pred ccccccccccccCCCCcEEEecCCCCccCCCC
Q 016966 345 VDYFRNELVKVGSSHLKRLRLEGSDLALNPAE 376 (379)
Q Consensus 345 l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 376 (379)
+-.+|+.+.. +|.|+.|++.+||.+-+||.
T Consensus 351 LiTLPeaIHl--L~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 351 LITLPEAIHL--LPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred eeechhhhhh--cCCcceeeccCCcCccCCCC
Confidence 5566665554 67777777777777777764
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.83 E-value=4.9e-22 Score=183.28 Aligned_cols=249 Identities=20% Similarity=0.284 Sum_probs=190.6
Q ss_pred CCccCCccEEEEeCCCCCCCCCCC-CCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCcccc
Q 016966 83 GSTIKHFTSIVLHGIKPNLLPEVL-ECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLG 158 (379)
Q Consensus 83 ~~~~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~ 158 (379)
+-.++.++.|++++|.+..+|... ..+++-.|+++.|. +..+|...|-++..|-.|||++|. +|..+.
T Consensus 99 iF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~--------IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~R 170 (1255)
T KOG0444|consen 99 IFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN--------IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIR 170 (1255)
T ss_pred hcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc--------cccCCchHHHhhHhHhhhccccchhhhcCHHHH
Confidence 345677888999999888888655 77788889998865 556888888899999999999998 888999
Q ss_pred CCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCc--ccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCc
Q 016966 159 LLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIV--KLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLE 234 (379)
Q Consensus 159 ~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 234 (379)
.|.+|+.|.+++|.+.. ...+-.+++|++|.+++++-+ .+|.++..+.+|+.++++.|. +..+|.- +.++++|+
T Consensus 171 RL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPec-ly~l~~Lr 248 (1255)
T KOG0444|consen 171 RLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-LPIVPEC-LYKLRNLR 248 (1255)
T ss_pred HHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-CCcchHH-Hhhhhhhh
Confidence 99999999999998766 566777778888888887443 778888888888888888744 5667766 57788888
Q ss_pred EEEecCCCCcChhhhh------------hcccccchHhhcCCCCCcEEEeeccCCC--CCCccc-cccCCcEEEEEeecc
Q 016966 235 ELYIGRESFVDWEEEV------------EGVKNASLEELKHLPNLTSLEVHVRDVS--SLPRGL-LLEKLERYSIYIRRY 299 (379)
Q Consensus 235 ~L~l~~~~~~~~~~~~------------~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~-~~~~L~~L~l~~~~~ 299 (379)
.|++++|.++...-.+ ..+...+|..++++++|+.|....|++. .+|+.+ .+.+|+.+....+..
T Consensus 249 rLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L 328 (1255)
T KOG0444|consen 249 RLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL 328 (1255)
T ss_pred eeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccc
Confidence 8888888776543111 1255568889999999999999988877 899888 678888777644433
Q ss_pred cccCcc----cccceEEEEe--CCcccchHHHHHHhcccceeecccccccccc
Q 016966 300 FSRKTG----IWCRQFRVEL--NNKICLKDSLIVQLQRIEDLELSELQEQDVD 346 (379)
Q Consensus 300 ~~~~~~----~~~~~~~L~l--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~ 346 (379)
. .+| ..+.+..|.+ +..+.+|+.|.-+ +-|+.|+++.|+ .+.
T Consensus 329 E--lVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL-~~l~vLDlreNp--nLV 376 (1255)
T KOG0444|consen 329 E--LVPEGLCRCVKLQKLKLDHNRLITLPEAIHLL-PDLKVLDLRENP--NLV 376 (1255)
T ss_pred c--cCchhhhhhHHHHHhcccccceeechhhhhhc-CCcceeeccCCc--Ccc
Confidence 2 222 2233346777 7778899999885 999999999999 554
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.80 E-value=5.6e-21 Score=174.91 Aligned_cols=245 Identities=19% Similarity=0.225 Sum_probs=164.9
Q ss_pred CCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCc-cccCCCCCcEEEeecCCCCC--cccccCc
Q 016966 109 PQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPS-SLGLLSNLRTLSLCSCGLPD--ISFVGYL 182 (379)
Q Consensus 109 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~-~i~~l~~L~~L~l~~~~l~~--~~~~~~l 182 (379)
.+++.|++.+|.+ +.+..+.|.++.+|-+|.|+.|. +|. .+.+|++|+.|+|.+|.|.. .-.+..|
T Consensus 173 ~ni~~L~La~N~I--------t~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL 244 (873)
T KOG4194|consen 173 VNIKKLNLASNRI--------TTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGL 244 (873)
T ss_pred CCceEEeeccccc--------cccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCc
Confidence 3455555555432 23333445556666666666666 443 45556667777776666555 3455566
Q ss_pred CCCcEEEeeCCcCcccchh-hcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhh
Q 016966 183 KKLEILCLRGSDIVKLPVE-VGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEEL 261 (379)
Q Consensus 183 ~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l 261 (379)
++|+.|.+..|++..+.++ +..|.++++|++..|.. ..+-.+++.+++.|+.|++++|.+.... ++..
T Consensus 245 ~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l-~~vn~g~lfgLt~L~~L~lS~NaI~rih----------~d~W 313 (873)
T KOG4194|consen 245 PSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRL-QAVNEGWLFGLTSLEQLDLSYNAIQRIH----------IDSW 313 (873)
T ss_pred hhhhhhhhhhcCcccccCcceeeecccceeecccchh-hhhhcccccccchhhhhccchhhhheee----------cchh
Confidence 6677777777766666653 55778888888888654 4444555788889999999988887764 6777
Q ss_pred cCCCCCcEEEeeccCCCCCCccc--cccCCcEEEEEeecccccC---cccccceEEEEe-CCccc--chH---HHHHHhc
Q 016966 262 KHLPNLTSLEVHVRDVSSLPRGL--LLEKLERYSIYIRRYFSRK---TGIWCRQFRVEL-NNKIC--LKD---SLIVQLQ 330 (379)
Q Consensus 262 ~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~l-~~~~~--~~~---~~~~~~~ 330 (379)
..+++|+.|+++.|.++++++.- .+..|++|.++.+...-.. +....++.+|++ .+... +++ .+.+ ++
T Consensus 314 sftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~g-l~ 392 (873)
T KOG4194|consen 314 SFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNG-LP 392 (873)
T ss_pred hhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhcc-ch
Confidence 78889999999999999887754 5788888888666543222 222233346666 22222 222 2344 49
Q ss_pred ccceeeccccccccccccccccccccCCCCcEEEecCCCCccCCCCC
Q 016966 331 RIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLALNPAES 377 (379)
Q Consensus 331 ~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 377 (379)
+|+.|.+.+|+ ++.++...+ .+++.|++|++.+|++.++-++.
T Consensus 393 ~LrkL~l~gNq---lk~I~krAf-sgl~~LE~LdL~~NaiaSIq~nA 435 (873)
T KOG4194|consen 393 SLRKLRLTGNQ---LKSIPKRAF-SGLEALEHLDLGDNAIASIQPNA 435 (873)
T ss_pred hhhheeecCce---eeecchhhh-ccCcccceecCCCCcceeecccc
Confidence 99999999997 999998776 37999999999999998877665
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.77 E-value=1.4e-19 Score=165.84 Aligned_cols=280 Identities=20% Similarity=0.283 Sum_probs=174.8
Q ss_pred CccCCccEEEEeCCCCCCCCCCC-CCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCc-ccc
Q 016966 84 STIKHFTSIVLHGIKPNLLPEVL-ECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPS-SLG 158 (379)
Q Consensus 84 ~~~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~-~i~ 158 (379)
..+++++.+++.+|.+..+|.+. ...+|+.|.+..|.+ ..+...-++.++.||+|||+.|. +|. ++.
T Consensus 99 ~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I--------~sv~se~L~~l~alrslDLSrN~is~i~~~sfp 170 (873)
T KOG4194|consen 99 YNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLI--------SSVTSEELSALPALRSLDLSRNLISEIPKPSFP 170 (873)
T ss_pred hcCCcceeeeeccchhhhcccccccccceeEEeeecccc--------ccccHHHHHhHhhhhhhhhhhchhhcccCCCCC
Confidence 44556666666666666666655 333466666666543 23344445667788888888877 332 445
Q ss_pred CCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCcccch-hhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcE
Q 016966 159 LLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIVKLPV-EVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEE 235 (379)
Q Consensus 159 ~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 235 (379)
.-.++++|+|++|.|+. ...+..+.+|.+|.+++|+++.+|. .+.++++|+.|++..|. ++.+....+..+++|+.
T Consensus 171 ~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~n 249 (873)
T KOG4194|consen 171 AKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQN 249 (873)
T ss_pred CCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhh
Confidence 55678888888888877 4677778888888888888888885 56668888888888754 33332222556666666
Q ss_pred EEecCCCCcChhhhhh-c------------c-cccchHhhcCCCCCcEEEeeccCCCCCCccc--cccCCcEEEEEeecc
Q 016966 236 LYIGRESFVDWEEEVE-G------------V-KNASLEELKHLPNLTSLEVHVRDVSSLPRGL--LLEKLERYSIYIRRY 299 (379)
Q Consensus 236 L~l~~~~~~~~~~~~~-~------------~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~ 299 (379)
|.+..|.+........ | . ....-.++-.++.|+.|++++|.+.++.... ++++|+.|+++.+..
T Consensus 250 lklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i 329 (873)
T KOG4194|consen 250 LKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRI 329 (873)
T ss_pred hhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccc
Confidence 6666665554321100 0 0 0001344556777788888888777554333 678888888866655
Q ss_pred cccCccccc---ceEEEEe--CCcccchHHHHHHhcccceeeccccccccccc-cccccc-cccCCCCcEEEecCCCCcc
Q 016966 300 FSRKTGIWC---RQFRVEL--NNKICLKDSLIVQLQRIEDLELSELQEQDVDY-FRNELV-KVGSSHLKRLRLEGSDLAL 372 (379)
Q Consensus 300 ~~~~~~~~~---~~~~L~l--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~-~~~~~~L~~L~l~~c~~l~ 372 (379)
.....+.+. .+..|.+ +....+.++....+++|+.|+|++|. +.- +.+... -.++|+|++|++.+|..-.
T Consensus 330 ~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~---ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~ 406 (873)
T KOG4194|consen 330 TRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE---LSWCIEDAAVAFNGLPSLRKLRLTGNQLKS 406 (873)
T ss_pred ccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe---EEEEEecchhhhccchhhhheeecCceeee
Confidence 533333332 2236666 33344655555446899999999987 332 222111 1258999999999998776
Q ss_pred CCC
Q 016966 373 NPA 375 (379)
Q Consensus 373 ~~~ 375 (379)
++.
T Consensus 407 I~k 409 (873)
T KOG4194|consen 407 IPK 409 (873)
T ss_pred cch
Confidence 654
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.74 E-value=6.4e-20 Score=161.11 Aligned_cols=269 Identities=23% Similarity=0.291 Sum_probs=182.8
Q ss_pred cCCccEEEEeCCCCCCCCCCC-CCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCcccc-CC
Q 016966 86 IKHFTSIVLHGIKPNLLPEVL-ECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLG-LL 160 (379)
Q Consensus 86 ~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~-~l 160 (379)
++.+.+++...|.++.+|+-. .+.+|.-|++..|+ +..+|. |.++..|+.|+++.|. +|.... .+
T Consensus 182 m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nk--------i~~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L 251 (565)
T KOG0472|consen 182 MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNK--------IRFLPE--FPGCSLLKELHVGENQIEMLPAEHLKHL 251 (565)
T ss_pred HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcc--------cccCCC--CCccHHHHHHHhcccHHHhhHHHHhccc
Confidence 667777777777777777533 77777777777755 444553 5677777777777777 666554 77
Q ss_pred CCCcEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCccc-----------------
Q 016966 161 SNLRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVI----------------- 222 (379)
Q Consensus 161 ~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~----------------- 222 (379)
.++..||+..|++++ |..++.+++|.+||+++|.++.+|.+++++ .|+.|.+.+|.. +.+
T Consensus 252 ~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl-rTiRr~ii~~gT~~vLKyLr 329 (565)
T KOG0472|consen 252 NSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL-RTIRREIISKGTQEVLKYLR 329 (565)
T ss_pred ccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCch-HHHHHHHHcccHHHHHHHHH
Confidence 778888888888777 777777888888888888888888778877 777777666510 000
Q ss_pred ---------------------Chh---hhCCCCCCcEEEecCCCCcChhhhhhc--------------------------
Q 016966 223 ---------------------PPN---ILSKLSHLEELYIGRESFVDWEEEVEG-------------------------- 252 (379)
Q Consensus 223 ---------------------~~~---~l~~l~~L~~L~l~~~~~~~~~~~~~~-------------------------- 252 (379)
+.. ....+.+.+.|.+++-.++..+.++..
T Consensus 330 s~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~ 409 (565)
T KOG0472|consen 330 SKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVE 409 (565)
T ss_pred HhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHH
Confidence 000 012223444555554444433322211
Q ss_pred -------------ccccchHhhcCCCCCcEEEeeccCCCCCCccc-cccCCcEEEEEeecccccCcccccceE---EEEe
Q 016966 253 -------------VKNASLEELKHLPNLTSLEVHVRDVSSLPRGL-LLEKLERYSIYIRRYFSRKTGIWCRQF---RVEL 315 (379)
Q Consensus 253 -------------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~---~L~l 315 (379)
.....+..++.+++|..|++++|-+.++|.++ .+..|+.++++.+.+. ..|.+.... +..+
T Consensus 410 lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr--~lP~~~y~lq~lEtll 487 (565)
T KOG0472|consen 410 LKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFR--MLPECLYELQTLETLL 487 (565)
T ss_pred HHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccc--cchHHHhhHHHHHHHH
Confidence 33345677888999999999999999999987 5777999999776443 333332222 2222
Q ss_pred --CCccc-c-hHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCCccCC
Q 016966 316 --NNKIC-L-KDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLALNP 374 (379)
Q Consensus 316 --~~~~~-~-~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 374 (379)
++... + ++++..+ .+|..|++.+|. +..+|..++. +.+|++|++++||+...+
T Consensus 488 as~nqi~~vd~~~l~nm-~nL~tLDL~nNd---lq~IPp~Lgn--mtnL~hLeL~gNpfr~Pr 544 (565)
T KOG0472|consen 488 ASNNQIGSVDPSGLKNM-RNLTTLDLQNND---LQQIPPILGN--MTNLRHLELDGNPFRQPR 544 (565)
T ss_pred hccccccccChHHhhhh-hhcceeccCCCc---hhhCChhhcc--ccceeEEEecCCccCCCH
Confidence 23333 3 4557775 999999999998 8999987754 999999999999998543
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.74 E-value=7.3e-17 Score=169.48 Aligned_cols=281 Identities=21% Similarity=0.247 Sum_probs=186.8
Q ss_pred cCCccEEEEeCCCCCCC--C--CCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCcccc
Q 016966 86 IKHFTSIVLHGIKPNLL--P--EVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLG 158 (379)
Q Consensus 86 ~~~l~~L~l~~~~~~~~--~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~ 158 (379)
..+++.+.+....+..+ . .+..+++|+.|.+..+..... ......+|..+..-..+||.|++.++. +|..+
T Consensus 531 ~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~-~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f- 608 (1153)
T PLN03210 531 TKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQK-KEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF- 608 (1153)
T ss_pred cceeeEEEeccCccceeeecHHHHhcCccccEEEEeccccccc-ccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-
Confidence 35667777665555322 1 245899999999876432110 000224565543334579999999987 88776
Q ss_pred CCCCCcEEEeecCCCCC-cccccCcCCCcEEEeeCC-cCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEE
Q 016966 159 LLSNLRTLSLCSCGLPD-ISFVGYLKKLEILCLRGS-DIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEEL 236 (379)
Q Consensus 159 ~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L 236 (379)
.+.+|+.|++.++.+.. +..+..+++|++|+++++ .+..+| .+..+++|++|++++|.....+|.. ++++++|+.|
T Consensus 609 ~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L 686 (1153)
T PLN03210 609 RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDL 686 (1153)
T ss_pred CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchh-hhccCCCCEE
Confidence 57899999999999988 788889999999999988 567888 5889999999999999999999987 7999999999
Q ss_pred EecCCCCc-Chhhhhh-c-------ccccchHhh-cCCCCCcEEEeeccCCCCCCccccccCCcEEEEEeeccc---cc-
Q 016966 237 YIGRESFV-DWEEEVE-G-------VKNASLEEL-KHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYF---SR- 302 (379)
Q Consensus 237 ~l~~~~~~-~~~~~~~-~-------~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~- 302 (379)
++.+|... ..+.... . ........+ ...++|+.|++.++.+..+|..+.+++|+.|.+...... ..
T Consensus 687 ~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~ 766 (1153)
T PLN03210 687 DMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERV 766 (1153)
T ss_pred eCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccc
Confidence 99987533 2210000 0 000000000 012345556666666666666555666666665321110 00
Q ss_pred --C----cccccceEEEEeCC---cccchHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCCccC
Q 016966 303 --K----TGIWCRQFRVELNN---KICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLALN 373 (379)
Q Consensus 303 --~----~~~~~~~~~L~l~~---~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 373 (379)
. ....++...|.+.+ ...+|..+..+ ++|+.|++.+|. .++.+|... .+++|++|++++|..++.
T Consensus 767 ~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L-~~L~~L~Ls~C~--~L~~LP~~~---~L~sL~~L~Ls~c~~L~~ 840 (1153)
T PLN03210 767 QPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNL-HKLEHLEIENCI--NLETLPTGI---NLESLESLDLSGCSRLRT 840 (1153)
T ss_pred cccchhhhhccccchheeCCCCCCccccChhhhCC-CCCCEEECCCCC--CcCeeCCCC---CccccCEEECCCCCcccc
Confidence 0 00112334677722 33478888875 999999999998 888888755 388999999999988876
Q ss_pred CCC
Q 016966 374 PAE 376 (379)
Q Consensus 374 ~~~ 376 (379)
.|+
T Consensus 841 ~p~ 843 (1153)
T PLN03210 841 FPD 843 (1153)
T ss_pred ccc
Confidence 654
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.67 E-value=1.2e-19 Score=159.49 Aligned_cols=213 Identities=24% Similarity=0.264 Sum_probs=106.7
Q ss_pred CCceeEEEecCCC---CCccccCCCCCcEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccC
Q 016966 140 MIEVRVVNLTDMI---LPSSLGLLSNLRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRD 215 (379)
Q Consensus 140 l~~L~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~ 215 (379)
+..++.|++++++ +|..++.+..|+.++++.|.+.. +++++.+..|+.++..+|++..+|..++.+.+|..+++.+
T Consensus 90 l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~ 169 (565)
T KOG0472|consen 90 LEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEG 169 (565)
T ss_pred HHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccc
Confidence 4444444444444 44444444444444444444444 4444444444444444444444444444444444444444
Q ss_pred CCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccccccCCcEEEEE
Q 016966 216 CCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIY 295 (379)
Q Consensus 216 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~ 295 (379)
|. ...+|+..+ +++.|++|+...|-+.. +|++++.+.+|..|++..|++..+|+.-.|..|.++.+.
T Consensus 170 n~-l~~l~~~~i-~m~~L~~ld~~~N~L~t-----------lP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g 236 (565)
T KOG0472|consen 170 NK-LKALPENHI-AMKRLKHLDCNSNLLET-----------LPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVG 236 (565)
T ss_pred cc-hhhCCHHHH-HHHHHHhcccchhhhhc-----------CChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhc
Confidence 22 223333322 24444444444433332 344444444444444444444444432234444444432
Q ss_pred eecccc--c-CcccccceEEEEe--CCcccchHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCC
Q 016966 296 IRRYFS--R-KTGIWCRQFRVEL--NNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDL 370 (379)
Q Consensus 296 ~~~~~~--~-~~~~~~~~~~L~l--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 370 (379)
.+.... . ....++....|++ +.....|+.+.-+ ++|++|++++|. ++.+|.+++. + .|+.|.+.|||.
T Consensus 237 ~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clL-rsL~rLDlSNN~---is~Lp~sLgn--l-hL~~L~leGNPl 309 (565)
T KOG0472|consen 237 ENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLL-RSLERLDLSNND---ISSLPYSLGN--L-HLKFLALEGNPL 309 (565)
T ss_pred ccHHHhhHHHHhcccccceeeeccccccccCchHHHHh-hhhhhhcccCCc---cccCCccccc--c-eeeehhhcCCch
Confidence 221110 0 0001222234444 3334578877775 889999999997 8888887754 6 888999999887
Q ss_pred cc
Q 016966 371 AL 372 (379)
Q Consensus 371 l~ 372 (379)
-+
T Consensus 310 rT 311 (565)
T KOG0472|consen 310 RT 311 (565)
T ss_pred HH
Confidence 54
No 12
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.60 E-value=1.2e-17 Score=130.69 Aligned_cols=163 Identities=25% Similarity=0.377 Sum_probs=124.3
Q ss_pred CCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCCCCcEEEeecCCCCC-
Q 016966 100 NLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLSNLRTLSLCSCGLPD- 175 (379)
Q Consensus 100 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~l~~- 175 (379)
.+++....+++++.|.++.|+ ...+|+.+ ..+++|++|++.+|. +|.+++.+++|+.|++.-|++..
T Consensus 24 ~~~~gLf~~s~ITrLtLSHNK--------l~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~l 94 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHNK--------LTVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNIL 94 (264)
T ss_pred hhcccccchhhhhhhhcccCc--------eeecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcC
Confidence 445555566677777777754 34455554 567788888888877 88888888888888888888777
Q ss_pred cccccCcCCCcEEEeeCCcCc--ccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcc
Q 016966 176 ISFVGYLKKLEILCLRGSDIV--KLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGV 253 (379)
Q Consensus 176 ~~~~~~l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 253 (379)
|..++.++-|++|++.+|++. .+|..+..|+.|+.|.+++|. ...+|.. ++++++||.|.+..|.+.+
T Consensus 95 prgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d-vg~lt~lqil~lrdndll~-------- 164 (264)
T KOG0617|consen 95 PRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD-VGKLTNLQILSLRDNDLLS-------- 164 (264)
T ss_pred ccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh-hhhhcceeEEeeccCchhh--------
Confidence 888888888888888888776 677777778888888888844 5667776 6888888888888877765
Q ss_pred cccchHhhcCCCCCcEEEeeccCCCCCCccc
Q 016966 254 KNASLEELKHLPNLTSLEVHVRDVSSLPRGL 284 (379)
Q Consensus 254 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 284 (379)
++.+++.++.|++|.|.+|.++.+|..+
T Consensus 165 ---lpkeig~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 165 ---LPKEIGDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred ---CcHHHHHHHHHHHHhcccceeeecChhh
Confidence 5788888888888888888888777764
No 13
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=2.3e-17 Score=129.19 Aligned_cols=143 Identities=27% Similarity=0.396 Sum_probs=76.7
Q ss_pred CCceeEEEecCCC---CCccccCCCCCcEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccC
Q 016966 140 MIEVRVVNLTDMI---LPSSLGLLSNLRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRD 215 (379)
Q Consensus 140 l~~L~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~ 215 (379)
+.++..|.+++|. .|..|..+.+|+.|++.+|.+++ |.+++.+++|+.|++.-|++..+|.+++.+|.|+.|++.+
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldlty 111 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTY 111 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccc
Confidence 4555555555555 55555555555555555555555 5555555555555555555555555555555555555555
Q ss_pred CCCCcc-cChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccc-cccCCcEEE
Q 016966 216 CCFLKV-IPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGL-LLEKLERYS 293 (379)
Q Consensus 216 ~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~ 293 (379)
|+.... +|.. +..+..|+-|+++.|.+.- ++.+++++++|+.|.++.|.+-++|..+ .+..|+.|.
T Consensus 112 nnl~e~~lpgn-ff~m~tlralyl~dndfe~-----------lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelh 179 (264)
T KOG0617|consen 112 NNLNENSLPGN-FFYMTTLRALYLGDNDFEI-----------LPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELH 179 (264)
T ss_pred cccccccCCcc-hhHHHHHHHHHhcCCCccc-----------CChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHh
Confidence 444332 3333 4445555555555555443 3455555555555555555555555544 344444443
Q ss_pred E
Q 016966 294 I 294 (379)
Q Consensus 294 l 294 (379)
+
T Consensus 180 i 180 (264)
T KOG0617|consen 180 I 180 (264)
T ss_pred c
Confidence 3
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.57 E-value=1.7e-14 Score=142.96 Aligned_cols=240 Identities=18% Similarity=0.239 Sum_probs=134.0
Q ss_pred CccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCCCCc
Q 016966 88 HFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLSNLR 164 (379)
Q Consensus 88 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~~L~ 164 (379)
+...|.+.++++..+|... .+.++.|++.+|.+ ..+|..++ .+|++|++++|. +|..+. .+|+
T Consensus 179 ~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~L--------tsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~ 244 (754)
T PRK15370 179 NKTELRLKILGLTTIPACI-PEQITTLILDNNEL--------KSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQ 244 (754)
T ss_pred CceEEEeCCCCcCcCCccc-ccCCcEEEecCCCC--------CcCChhhc---cCCCEEECCCCccccCChhhh--cccc
Confidence 3455666666665555422 24566666666543 23444432 356666666665 554332 3566
Q ss_pred EEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCC
Q 016966 165 TLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESF 243 (379)
Q Consensus 165 ~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 243 (379)
.|++++|.+.. |..+. .+|++|++++|+++.+|..+. ++|++|++++|.. ..+|.. +. ++|+.|++++|.+
T Consensus 245 ~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~L-t~LP~~-lp--~sL~~L~Ls~N~L 316 (754)
T PRK15370 245 EMELSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSI-RTLPAH-LP--SGITHLNVQSNSL 316 (754)
T ss_pred EEECcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCcc-ccCccc-ch--hhHHHHHhcCCcc
Confidence 66676666665 44432 356667776666666665443 3566676666543 334432 11 3566666666655
Q ss_pred cChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccccccCCcEEEEEeecccccCcc-cc-cceEEEEe--CCcc
Q 016966 244 VDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYFSRKTG-IW-CRQFRVEL--NNKI 319 (379)
Q Consensus 244 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~-~~~~~L~l--~~~~ 319 (379)
... +..+ .++|+.|.+.+|.++.+|..+ .++|+.|+++.+... .+| .+ +....|++ +...
T Consensus 317 t~L-----------P~~l--~~sL~~L~Ls~N~Lt~LP~~l-~~sL~~L~Ls~N~L~--~LP~~lp~~L~~LdLs~N~Lt 380 (754)
T PRK15370 317 TAL-----------PETL--PPGLKTLEAGENALTSLPASL-PPELQVLDVSKNQIT--VLPETLPPTITTLDVSRNALT 380 (754)
T ss_pred ccC-----------Cccc--cccceeccccCCccccCChhh-cCcccEEECCCCCCC--cCChhhcCCcCEEECCCCcCC
Confidence 542 1111 145666666666666665543 256666666444332 111 11 22235566 2333
Q ss_pred cchHHHHHHhcccceeeccccccccccccccccc--cccCCCCcEEEecCCCCc
Q 016966 320 CLKDSLIVQLQRIEDLELSELQEQDVDYFRNELV--KVGSSHLKRLRLEGSDLA 371 (379)
Q Consensus 320 ~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~--~~~~~~L~~L~l~~c~~l 371 (379)
.+|+.+. +.|+.|++++|. +..+|..+. ...+|.+..|++.+|+..
T Consensus 381 ~LP~~l~---~sL~~LdLs~N~---L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 381 NLPENLP---AALQIMQASRNN---LVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CCCHhHH---HHHHHHhhccCC---cccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 4665542 568899999987 777776542 224688899999998863
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.54 E-value=2.4e-13 Score=134.21 Aligned_cols=234 Identities=19% Similarity=0.157 Sum_probs=156.1
Q ss_pred ccCCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCC
Q 016966 85 TIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLS 161 (379)
Q Consensus 85 ~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~ 161 (379)
..++++.|.+.+|.+..+|.. .++|++|++++|.+.. +|. ..++|+.|++++|. +|.. ..
T Consensus 220 l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~Lts--------LP~----lp~sL~~L~Ls~N~L~~Lp~l---p~ 282 (788)
T PRK15387 220 LPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTS--------LPV----LPPGLLELSIFSNPLTHLPAL---PS 282 (788)
T ss_pred hhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCc--------ccC----cccccceeeccCCchhhhhhc---hh
Confidence 345789999999988888764 5789999999976543 443 13578889998887 4432 35
Q ss_pred CCcEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecC
Q 016966 162 NLRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGR 240 (379)
Q Consensus 162 ~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 240 (379)
.|+.|++++|.++. |.. +++|+.|++++|.++.+|.. ..+|+.|.+++|.. ..+|.. .++|+.|++++
T Consensus 283 ~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~L-~~LP~l----p~~Lq~LdLS~ 351 (788)
T PRK15387 283 GLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQL-TSLPTL----PSGLQELSVSD 351 (788)
T ss_pred hcCEEECcCCcccccccc---ccccceeECCCCccccCCCC---cccccccccccCcc-cccccc----ccccceEecCC
Confidence 67888898888877 442 46789999999988887752 23577777777554 445531 24788888888
Q ss_pred CCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccccccCCcEEEEEeecccccCccccc-ceEEEEe--CC
Q 016966 241 ESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYFSRKTGIWC-RQFRVEL--NN 317 (379)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~l--~~ 317 (379)
|.+...+ .. .++|+.|+++.|.+..+|.. ..+|+.|+++.+... .+|..+ +...|++ +.
T Consensus 352 N~Ls~LP-----------~l---p~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~Lt--~LP~l~s~L~~LdLS~N~ 413 (788)
T PRK15387 352 NQLASLP-----------TL---PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLT--SLPVLPSELKELMVSGNR 413 (788)
T ss_pred CccCCCC-----------CC---CcccceehhhccccccCccc--ccccceEEecCCccc--CCCCcccCCCEEEccCCc
Confidence 8877632 11 24566777777777766653 356777777544433 223222 3336666 33
Q ss_pred cccchHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCCccC
Q 016966 318 KICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLALN 373 (379)
Q Consensus 318 ~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 373 (379)
...+|.. +.+|+.|++++|. ++.+|..+.. +++|+.|++++|+....
T Consensus 414 LssIP~l----~~~L~~L~Ls~Nq---Lt~LP~sl~~--L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 414 LTSLPML----PSGLLSLSVYRNQ---LTRLPESLIH--LSSETTVNLEGNPLSER 460 (788)
T ss_pred CCCCCcc----hhhhhhhhhccCc---ccccChHHhh--ccCCCeEECCCCCCCch
Confidence 3334431 3567788888886 7788876654 78888888888887643
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.48 E-value=1.9e-15 Score=145.83 Aligned_cols=258 Identities=20% Similarity=0.225 Sum_probs=165.9
Q ss_pred CCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCCCC
Q 016966 87 KHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLSNL 163 (379)
Q Consensus 87 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~~L 163 (379)
+++++|..+.|.+..........+|+.++++.|.+ ..+| ++...+.+|..+++.+|. +|..+.....|
T Consensus 219 ~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l--------~~lp-~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L 289 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNL--------SNLP-EWIGACANLEALNANHNRLVALPLRISRITSL 289 (1081)
T ss_pred cchheeeeccCcceeeccccccccceeeecchhhh--------hcch-HHHHhcccceEecccchhHHhhHHHHhhhhhH
Confidence 45666666666664333233445677777777553 3455 667778888888888887 77777888888
Q ss_pred cEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccchhhc-CCCC-CCEEeccCCCCCcccChhhhCCCCCCcEEEecC
Q 016966 164 RTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPVEVG-ELTW-LKLLDLRDCCFLKVIPPNILSKLSHLEELYIGR 240 (379)
Q Consensus 164 ~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~-~l~~-L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 240 (379)
++|.+..|.++. |+....+++|++|++..|.+..+|+.+- .+.. |+.|+.+.+. +...|...=..++.|+.|++.+
T Consensus 290 ~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~-l~~lp~~~e~~~~~Lq~Lylan 368 (1081)
T KOG0618|consen 290 VSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNK-LSTLPSYEENNHAALQELYLAN 368 (1081)
T ss_pred HHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcc-ccccccccchhhHHHHHHHHhc
Confidence 888888888877 7777778888888888888887776332 2222 5555555432 3344432223455677777777
Q ss_pred CCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccc--cccCCcEEEEEeeccc--ccCcccccceEEEEe-
Q 016966 241 ESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGL--LLEKLERYSIYIRRYF--SRKTGIWCRQFRVEL- 315 (379)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~l- 315 (379)
|.+++.. .+.+.+.++|+.|.+++|.+..+|... .++.|+.|.++.+... ......|..+.+|..
T Consensus 369 N~Ltd~c----------~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ah 438 (1081)
T KOG0618|consen 369 NHLTDSC----------FPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAH 438 (1081)
T ss_pred Ccccccc----------hhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhc
Confidence 7776543 566777777888888888777777654 5677777777554433 111112333334555
Q ss_pred CCc-ccchHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCC
Q 016966 316 NNK-ICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDL 370 (379)
Q Consensus 316 ~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 370 (379)
.+. ...| .+..+ +.|+.++++.|. ++.+.-.... .-|+|++|++++|..
T Consensus 439 sN~l~~fP-e~~~l-~qL~~lDlS~N~---L~~~~l~~~~-p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 439 SNQLLSFP-ELAQL-PQLKVLDLSCNN---LSEVTLPEAL-PSPNLKYLDLSGNTR 488 (1081)
T ss_pred CCceeech-hhhhc-CcceEEecccch---hhhhhhhhhC-CCcccceeeccCCcc
Confidence 333 3455 57775 999999999887 6655432211 137899999999874
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.41 E-value=1.6e-13 Score=125.31 Aligned_cols=259 Identities=18% Similarity=0.140 Sum_probs=163.4
Q ss_pred ccCCccEEEEeCCCCC-----CCCC-CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CC
Q 016966 85 TIKHFTSIVLHGIKPN-----LLPE-VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LP 154 (379)
Q Consensus 85 ~~~~l~~L~l~~~~~~-----~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp 154 (379)
....++.+.+.++.+. .++. ....+.++.+.+.++.+... .. ........+..+++|+.|++++|. .+
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~-~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRI-PR-GLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCc-ch-HHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 3455888888888772 2333 23667788888888554310 00 111122345678899999998887 23
Q ss_pred ccccCCCC---CcEEEeecCCCCC------cccccCc-CCCcEEEeeCCcCc-----ccchhhcCCCCCCEEeccCCCCC
Q 016966 155 SSLGLLSN---LRTLSLCSCGLPD------ISFVGYL-KKLEILCLRGSDIV-----KLPVEVGELTWLKLLDLRDCCFL 219 (379)
Q Consensus 155 ~~i~~l~~---L~~L~l~~~~l~~------~~~~~~l-~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~~ 219 (379)
..+..+.+ |++|++++|.+.. ...+..+ ++|+.|++++|.++ .++..+..+++|++|++++|...
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG 178 (319)
T ss_pred HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence 34444444 9999999998774 2345566 88999999999877 34456677788999999887765
Q ss_pred cc----cChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCC-ccc--c----ccC
Q 016966 220 KV----IPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLP-RGL--L----LEK 288 (379)
Q Consensus 220 ~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~--~----~~~ 288 (379)
.. ++.. +...++|++|++++|.+.+.. ...+...+..+++|+.|++++|.++... ..+ . .+.
T Consensus 179 ~~~~~~l~~~-l~~~~~L~~L~L~~n~i~~~~------~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~ 251 (319)
T cd00116 179 DAGIRALAEG-LKANCNLEVLDLNNNGLTDEG------ASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNIS 251 (319)
T ss_pred hHHHHHHHHH-HHhCCCCCEEeccCCccChHH------HHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCC
Confidence 32 2222 455679999999988876432 1224456677888999999988776311 111 1 267
Q ss_pred CcEEEEEeecccccCcccccceEEEEeCCcccchHHHHHHhcccceeeccccccccccccccccc---cccC-CCCcEEE
Q 016966 289 LERYSIYIRRYFSRKTGIWCRQFRVELNNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELV---KVGS-SHLKRLR 364 (379)
Q Consensus 289 L~~L~l~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~---~~~~-~~L~~L~ 364 (379)
|+.|++..+.... .....+...+.. +++|+++++++|. +...+.... ...+ +.|+.|+
T Consensus 252 L~~L~l~~n~i~~--------------~~~~~l~~~~~~-~~~L~~l~l~~N~---l~~~~~~~~~~~~~~~~~~~~~~~ 313 (319)
T cd00116 252 LLTLSLSCNDITD--------------DGAKDLAEVLAE-KESLLELDLRGNK---FGEEGAQLLAESLLEPGNELESLW 313 (319)
T ss_pred ceEEEccCCCCCc--------------HHHHHHHHHHhc-CCCccEEECCCCC---CcHHHHHHHHHHHhhcCCchhhcc
Confidence 8888775443210 011123333444 3789999999997 444322111 1234 7899999
Q ss_pred ecCCCC
Q 016966 365 LEGSDL 370 (379)
Q Consensus 365 l~~c~~ 370 (379)
+.+++.
T Consensus 314 ~~~~~~ 319 (319)
T cd00116 314 VKDDSF 319 (319)
T ss_pred cCCCCC
Confidence 988763
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.41 E-value=1.6e-12 Score=128.97 Aligned_cols=219 Identities=21% Similarity=0.236 Sum_probs=135.1
Q ss_pred CccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCCCCcEEEeecCCCCC-cccccCcCCC
Q 016966 110 QLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLSNLRTLSLCSCGLPD-ISFVGYLKKL 185 (379)
Q Consensus 110 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~l~~-~~~~~~l~~L 185 (379)
+...|.+.++.+ ..+|..+ .++|+.|++++|. +|..+. .+|++|++++|.++. |..+. .+|
T Consensus 179 ~~~~L~L~~~~L--------tsLP~~I---p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L 243 (754)
T PRK15370 179 NKTELRLKILGL--------TTIPACI---PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTI 243 (754)
T ss_pred CceEEEeCCCCc--------CcCCccc---ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccc
Confidence 456677776443 3345433 2467788888877 665443 478888888887776 54432 368
Q ss_pred cEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCC
Q 016966 186 EILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLP 265 (379)
Q Consensus 186 ~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~ 265 (379)
+.|++++|.+..+|..+. .+|+.|++++|.. ..+|.. +. ++|+.|++++|.+... +..+. +
T Consensus 244 ~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L-~~LP~~-l~--~sL~~L~Ls~N~Lt~L-----------P~~lp--~ 304 (754)
T PRK15370 244 QEMELSINRITELPERLP--SALQSLDLFHNKI-SCLPEN-LP--EELRYLSVYDNSIRTL-----------PAHLP--S 304 (754)
T ss_pred cEEECcCCccCcCChhHh--CCCCEEECcCCcc-Cccccc-cC--CCCcEEECCCCccccC-----------cccch--h
Confidence 888888888877776554 4688888877553 456654 22 4788888888777653 22221 3
Q ss_pred CCcEEEeeccCCCCCCccccccCCcEEEEEeecccccCccccc-ceEEEEe--CCcccchHHHHHHhcccceeecccccc
Q 016966 266 NLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYFSRKTGIWC-RQFRVEL--NNKICLKDSLIVQLQRIEDLELSELQE 342 (379)
Q Consensus 266 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~l--~~~~~~~~~~~~~~~~L~~L~l~~~~~ 342 (379)
+|+.|++++|.++.+|..+ .++|+.|.+..+.... ....++ +...|++ ++...+|..+ .++|+.|++++|.
T Consensus 305 sL~~L~Ls~N~Lt~LP~~l-~~sL~~L~Ls~N~Lt~-LP~~l~~sL~~L~Ls~N~L~~LP~~l---p~~L~~LdLs~N~- 378 (754)
T PRK15370 305 GITHLNVQSNSLTALPETL-PPGLKTLEAGENALTS-LPASLPPELQVLDVSKNQITVLPETL---PPTITTLDVSRNA- 378 (754)
T ss_pred hHHHHHhcCCccccCCccc-cccceeccccCCcccc-CChhhcCcccEEECCCCCCCcCChhh---cCCcCEEECCCCc-
Confidence 5777888888877776543 3677777775544331 111122 3336666 2333355433 3677778887776
Q ss_pred ccccccccccccccCCCCcEEEecCCCCccCC
Q 016966 343 QDVDYFRNELVKVGSSHLKRLRLEGSDLALNP 374 (379)
Q Consensus 343 ~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 374 (379)
+..+|..+ .+.|+.|++++|.....|
T Consensus 379 --Lt~LP~~l----~~sL~~LdLs~N~L~~LP 404 (754)
T PRK15370 379 --LTNLPENL----PAALQIMQASRNNLVRLP 404 (754)
T ss_pred --CCCCCHhH----HHHHHHHhhccCCcccCc
Confidence 66666543 245777777777766554
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.40 E-value=2.5e-13 Score=123.94 Aligned_cols=235 Identities=19% Similarity=0.142 Sum_probs=151.8
Q ss_pred CCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----------CCccccCCCCCcEEEeecCCCCC-
Q 016966 107 ECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----------LPSSLGLLSNLRTLSLCSCGLPD- 175 (379)
Q Consensus 107 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----------lp~~i~~l~~L~~L~l~~~~l~~- 175 (379)
.+.+|+.|.+.++.+++.. ...++ ..+...+.++.|+++++. ++..+..+++|++|++++|.+..
T Consensus 21 ~l~~L~~l~l~~~~l~~~~---~~~i~-~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEA---AKALA-SALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHhhccEEeecCCCCcHHH---HHHHH-HHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 5666899999986653310 11222 334567778999988875 22356778899999999998764
Q ss_pred -cccccCcCC---CcEEEeeCCcCc-----ccchhhcCC-CCCCEEeccCCCCCcc----cChhhhCCCCCCcEEEecCC
Q 016966 176 -ISFVGYLKK---LEILCLRGSDIV-----KLPVEVGEL-TWLKLLDLRDCCFLKV----IPPNILSKLSHLEELYIGRE 241 (379)
Q Consensus 176 -~~~~~~l~~---L~~L~l~~~~l~-----~lp~~~~~l-~~L~~L~l~~~~~~~~----~~~~~l~~l~~L~~L~l~~~ 241 (379)
+..+..+.+ |++|++++|.+. .+...+..+ ++|+.|++++|..... ++.. +..+++|++|++.+|
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~~L~~L~l~~n 175 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA-LRANRDLKELNLANN 175 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH-HHhCCCcCEEECcCC
Confidence 444544444 999999998776 233456667 8899999999876532 2222 566778999999988
Q ss_pred CCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCC-----ccc-cccCCcEEEEEeecccccCcccccceEEEEe
Q 016966 242 SFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLP-----RGL-LLEKLERYSIYIRRYFSRKTGIWCRQFRVEL 315 (379)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-----~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~l 315 (379)
.+.+.. ...+...+..+++|+.|++++|.+.... ..+ .+++|+.|+++.+....
T Consensus 176 ~l~~~~------~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~-------------- 235 (319)
T cd00116 176 GIGDAG------IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD-------------- 235 (319)
T ss_pred CCchHH------HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch--------------
Confidence 876422 1123455666688999999988776322 112 46778888885443320
Q ss_pred CCcccchHHHHHH----hcccceeeccccccccccccccc-c--ccccCCCCcEEEecCCCCccC
Q 016966 316 NNKICLKDSLIVQ----LQRIEDLELSELQEQDVDYFRNE-L--VKVGSSHLKRLRLEGSDLALN 373 (379)
Q Consensus 316 ~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~l~~~~~~-~--~~~~~~~L~~L~l~~c~~l~~ 373 (379)
.....+... .+.|++|++.+|. +++.... + ....+++|+++++++|.....
T Consensus 236 ----~~~~~l~~~~~~~~~~L~~L~l~~n~---i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 236 ----AGAAALASALLSPNISLLTLSLSCND---ITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred ----HHHHHHHHHHhccCCCceEEEccCCC---CCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 011112222 2699999999997 4421111 1 122468999999999987643
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.39 E-value=3.1e-12 Score=126.48 Aligned_cols=231 Identities=20% Similarity=0.203 Sum_probs=165.9
Q ss_pred ccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCCCCcE
Q 016966 89 FTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLSNLRT 165 (379)
Q Consensus 89 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~~L~~ 165 (379)
-..|+++.+.+..+|... .++|+.|.+..|.+. .+|. .+++|++|++++|. +|. ..++|+.
T Consensus 203 ~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt--------~LP~----lp~~Lk~LdLs~N~LtsLP~---lp~sL~~ 266 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLT--------SLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLE 266 (788)
T ss_pred CcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCC--------CCCC----CCCCCcEEEecCCccCcccC---cccccce
Confidence 456888999888888743 257999999997654 3443 25789999999998 653 2468899
Q ss_pred EEeecCCCCC-cccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCc
Q 016966 166 LSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFV 244 (379)
Q Consensus 166 L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 244 (379)
|++.+|.+.. |.. ..+|+.|++++|+++.+|. .+++|+.|++++|.. ..+|.. ..+|+.|++.+|.+.
T Consensus 267 L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L-~~Lp~l----p~~L~~L~Ls~N~L~ 335 (788)
T PRK15387 267 LSIFSNPLTHLPAL---PSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQL-ASLPAL----PSELCKLWAYNNQLT 335 (788)
T ss_pred eeccCCchhhhhhc---hhhcCEEECcCCccccccc---cccccceeECCCCcc-ccCCCC----cccccccccccCccc
Confidence 9999999877 432 2578899999999999985 347899999999764 445542 236788889988887
Q ss_pred ChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccccccCCcEEEEEeecccccCccccc-ceEEEEe-CCcc-cc
Q 016966 245 DWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYFSRKTGIWC-RQFRVEL-NNKI-CL 321 (379)
Q Consensus 245 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~l-~~~~-~~ 321 (379)
..+ . ...+|+.|++++|+++.+|.. .++|+.|.++.+... .+|..+ +...|++ .+.. .+
T Consensus 336 ~LP-----------~---lp~~Lq~LdLS~N~Ls~LP~l--p~~L~~L~Ls~N~L~--~LP~l~~~L~~LdLs~N~Lt~L 397 (788)
T PRK15387 336 SLP-----------T---LPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLT--SLPALPSGLKELIVSGNRLTSL 397 (788)
T ss_pred ccc-----------c---cccccceEecCCCccCCCCCC--Ccccceehhhccccc--cCcccccccceEEecCCcccCC
Confidence 532 1 114799999999999988864 467888877554433 334333 3347777 3333 34
Q ss_pred hHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCCccCCCC
Q 016966 322 KDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLALNPAE 376 (379)
Q Consensus 322 ~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 376 (379)
|.. .++|+.|++++|. ++.+|.. +.+|+.|++++|.+.++|..
T Consensus 398 P~l----~s~L~~LdLS~N~---LssIP~l-----~~~L~~L~Ls~NqLt~LP~s 440 (788)
T PRK15387 398 PVL----PSELKELMVSGNR---LTSLPML-----PSGLLSLSVYRNQLTRLPES 440 (788)
T ss_pred CCc----ccCCCEEEccCCc---CCCCCcc-----hhhhhhhhhccCcccccChH
Confidence 431 3789999999997 7777741 45788999999998877653
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.32 E-value=1.3e-13 Score=133.27 Aligned_cols=250 Identities=20% Similarity=0.229 Sum_probs=157.8
Q ss_pred CccEEEEeCCCCCCCCCCC-CCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCCCC
Q 016966 88 HFTSIVLHGIKPNLLPEVL-ECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLSNL 163 (379)
Q Consensus 88 ~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~~L 163 (379)
++.+|++++|.+..+|.-. .+.+|+.|.++.|. +..+|.. ..++++|++|.|.++. +|.++..+++|
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~--------i~~vp~s-~~~~~~l~~lnL~~n~l~~lP~~~~~lknl 116 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNY--------IRSVPSS-CSNMRNLQYLNLKNNRLQSLPASISELKNL 116 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchhh--------HhhCchh-hhhhhcchhheeccchhhcCchhHHhhhcc
Confidence 4788888888777777543 77788888888754 4455644 3678888888888887 88888888888
Q ss_pred cEEEeecCCCCC-cccccCcCCCcEEEeeCC-cCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCC
Q 016966 164 RTLSLCSCGLPD-ISFVGYLKKLEILCLRGS-DIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRE 241 (379)
Q Consensus 164 ~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 241 (379)
++|+++.|.+.. |..+..++.+..+..++| .+..++. .. ++++++..+.....++.. ++.+.. .|++..|
T Consensus 117 ~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~----~~-ik~~~l~~n~l~~~~~~~-i~~l~~--~ldLr~N 188 (1081)
T KOG0618|consen 117 QYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQ----TS-IKKLDLRLNVLGGSFLID-IYNLTH--QLDLRYN 188 (1081)
T ss_pred cccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhcc----cc-chhhhhhhhhcccchhcc-hhhhhe--eeecccc
Confidence 888888888777 777777777777777777 2223332 11 555555554444444443 344443 4666666
Q ss_pred CCcChhhhhhcccccchHhhcCC--------------------CCCcEEEeeccCCCCCCccccccCCcEEEEEeecccc
Q 016966 242 SFVDWEEEVEGVKNASLEELKHL--------------------PNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYFS 301 (379)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~l--------------------~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 301 (379)
.+... .+..+ ++|+.|....|.+..+-......+|+.++++.+...
T Consensus 189 ~~~~~-------------dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~- 254 (1081)
T KOG0618|consen 189 EMEVL-------------DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS- 254 (1081)
T ss_pred hhhhh-------------hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhh-
Confidence 55411 12222 344444444444442211113456777777555443
Q ss_pred cCccccc----ceEEEEe--CCcccchHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCCccCCC
Q 016966 302 RKTGIWC----RQFRVEL--NNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLALNPA 375 (379)
Q Consensus 302 ~~~~~~~----~~~~L~l--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 375 (379)
..|.|. +...+.+ +....+|..+... .+|+.|.+..|. ++.+|... +++.+|++|++..|.....|+
T Consensus 255 -~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~-~~L~~l~~~~ne---l~yip~~l--e~~~sL~tLdL~~N~L~~lp~ 327 (1081)
T KOG0618|consen 255 -NLPEWIGACANLEALNANHNRLVALPLRISRI-TSLVSLSAAYNE---LEYIPPFL--EGLKSLRTLDLQSNNLPSLPD 327 (1081)
T ss_pred -cchHHHHhcccceEecccchhHHhhHHHHhhh-hhHHHHHhhhhh---hhhCCCcc--cccceeeeeeehhccccccch
Confidence 333443 3335555 4445577777775 788888888887 77887754 358999999999998877665
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.31 E-value=2.5e-13 Score=119.76 Aligned_cols=228 Identities=19% Similarity=0.239 Sum_probs=121.3
Q ss_pred ccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccccCCCCCcEEEeec-CCCCC-c-ccccCcC
Q 016966 111 LELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGLLSNLRTLSLCS-CGLPD-I-SFVGYLK 183 (379)
Q Consensus 111 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~l~~L~~L~l~~-~~l~~-~-~~~~~l~ 183 (379)
...+.+..|. +..+|+..|+.+++||.|||++|. -|+.+..+..|..|-+.+ |+|++ | ..++.|.
T Consensus 69 tveirLdqN~--------I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~ 140 (498)
T KOG4237|consen 69 TVEIRLDQNQ--------ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLS 140 (498)
T ss_pred ceEEEeccCC--------cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHH
Confidence 4445555543 444566666666666666666666 555666666665555554 55666 4 4455666
Q ss_pred CCcEEEeeCCcCcccc-hhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhh-----hh-------
Q 016966 184 KLEILCLRGSDIVKLP-VEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEE-----EV------- 250 (379)
Q Consensus 184 ~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-----~~------- 250 (379)
.|+.|.+.-|.+.-++ ..+..+++|..|.+.+| ..+.++...+..+.+++++.+..|.+..... ..
T Consensus 141 slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ie 219 (498)
T KOG4237|consen 141 SLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIE 219 (498)
T ss_pred HHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhh
Confidence 6666666555555433 34556666666666553 2344444334555555555555444211000 00
Q ss_pred -hc---------------------------------------ccccchHhhcCCCCCcEEEeeccCCCCCCccc--cccC
Q 016966 251 -EG---------------------------------------VKNASLEELKHLPNLTSLEVHVRDVSSLPRGL--LLEK 288 (379)
Q Consensus 251 -~~---------------------------------------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~ 288 (379)
.| ........++.+++|+++.+++|.++.+.... ....
T Consensus 220 tsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~ 299 (498)
T KOG4237|consen 220 TSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAE 299 (498)
T ss_pred cccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhh
Confidence 00 00001122455566666666666666544432 3444
Q ss_pred CcEEEEEeecccccCcccccceEEEEeCCcccchHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCC
Q 016966 289 LERYSIYIRRYFSRKTGIWCRQFRVELNNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGS 368 (379)
Q Consensus 289 L~~L~l~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c 368 (379)
++.|.+..+. ...+...+.+-+..|+.|+|++|+ ++.+.+..+. ...+|.+|.+-.|
T Consensus 300 l~eL~L~~N~-------------------l~~v~~~~f~~ls~L~tL~L~~N~---it~~~~~aF~-~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 300 LQELYLTRNK-------------------LEFVSSGMFQGLSGLKTLSLYDNQ---ITTVAPGAFQ-TLFSLSTLNLLSN 356 (498)
T ss_pred hhhhhcCcch-------------------HHHHHHHhhhccccceeeeecCCe---eEEEeccccc-ccceeeeeehccC
Confidence 5555442221 222444443335888888898887 7777776652 4667788887766
Q ss_pred CC
Q 016966 369 DL 370 (379)
Q Consensus 369 ~~ 370 (379)
|.
T Consensus 357 p~ 358 (498)
T KOG4237|consen 357 PF 358 (498)
T ss_pred cc
Confidence 54
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.26 E-value=2.4e-13 Score=125.12 Aligned_cols=182 Identities=23% Similarity=0.330 Sum_probs=142.3
Q ss_pred EEEeCCCCCCCCCC---CCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCCCCcE
Q 016966 92 IVLHGIKPNLLPEV---LECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLSNLRT 165 (379)
Q Consensus 92 L~l~~~~~~~~~~~---~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~~L~~ 165 (379)
|.+++.....+|.. ..+..-...+++.|.+ ..+|..+ ..|..|..+.+..|. +|..+.++..|.|
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~--------~elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~ 125 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRF--------SELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTF 125 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhcccccc--------ccCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHH
Confidence 44555544444431 2444445566666553 3455543 556677777777766 9999999999999
Q ss_pred EEeecCCCCC-cccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCc
Q 016966 166 LSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFV 244 (379)
Q Consensus 166 L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 244 (379)
|+++.|.+.. |..++.|+ |+.|.+++|+++.+|..++.++.|.+|+.+.|. +..+|.. ++.+.+|+.|.+..|++.
T Consensus 126 l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsq-l~~l~slr~l~vrRn~l~ 202 (722)
T KOG0532|consen 126 LDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQ-LGYLTSLRDLNVRRNHLE 202 (722)
T ss_pred hhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhh-hhhchHH-hhhHHHHHHHHHhhhhhh
Confidence 9999999998 88888886 999999999999999999999999999999966 5777777 799999999999999887
Q ss_pred ChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccc-cccCCcEEEEEee
Q 016966 245 DWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGL-LLEKLERYSIYIR 297 (379)
Q Consensus 245 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~ 297 (379)
. ++.+++.++ |..|+++||++..+|-.+ .+..|+.|-+..+
T Consensus 203 ~-----------lp~El~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 203 D-----------LPEELCSLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQLENN 244 (722)
T ss_pred h-----------CCHHHhCCc-eeeeecccCceeecchhhhhhhhheeeeeccC
Confidence 7 678888664 999999999999999877 6777777777433
No 24
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.21 E-value=8.6e-12 Score=101.59 Aligned_cols=104 Identities=22% Similarity=0.232 Sum_probs=23.0
Q ss_pred CCceeEEEecCCC--CCcccc-CCCCCcEEEeecCCCCCcccccCcCCCcEEEeeCCcCcccchhh-cCCCCCCEEeccC
Q 016966 140 MIEVRVVNLTDMI--LPSSLG-LLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEV-GELTWLKLLDLRD 215 (379)
Q Consensus 140 l~~L~~L~l~~~~--lp~~i~-~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~-~~l~~L~~L~l~~ 215 (379)
...++.|+|+++. ..+.++ .+.+|+.|++++|.++..+.+..+++|++|++++|.++.+...+ ..+++|++|++++
T Consensus 18 ~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~ 97 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSN 97 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TT
T ss_pred ccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcC
Confidence 3344555555554 112333 24455555555555544444444555555555555555444333 2345555555554
Q ss_pred CCCCcccChhhhCCCCCCcEEEecCCCC
Q 016966 216 CCFLKVIPPNILSKLSHLEELYIGRESF 243 (379)
Q Consensus 216 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 243 (379)
|.....-....+..+++|+.|++.+|++
T Consensus 98 N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 98 NKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp S---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred CcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 4321111111134444555555554444
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.15 E-value=3e-11 Score=98.42 Aligned_cols=127 Identities=30% Similarity=0.362 Sum_probs=46.2
Q ss_pred ccCCCCCcEEEeecCCCCCccccc-CcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcE
Q 016966 157 LGLLSNLRTLSLCSCGLPDISFVG-YLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEE 235 (379)
Q Consensus 157 i~~l~~L~~L~l~~~~l~~~~~~~-~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 235 (379)
+.+..++++|++.++.|+.++.++ .+.+|+.|++++|.++.++ .+..+++|++|++++|.. ..+.......+++|++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I-~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRI-SSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred cccccccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCC-CccccchHHhCCcCCE
Confidence 344556778888888877766666 4677888888888877776 567778888888877554 3444332245778888
Q ss_pred EEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccc-----cccCCcEEEE
Q 016966 236 LYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGL-----LLEKLERYSI 294 (379)
Q Consensus 236 L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-----~~~~L~~L~l 294 (379)
|++++|.+.++. ....++.+++|+.|++.+|.+...+..- .+|+|+.|+-
T Consensus 93 L~L~~N~I~~l~---------~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 93 LYLSNNKISDLN---------ELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EE-TTS---SCC---------CCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred EECcCCcCCChH---------HhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 888888777654 4566777788888888877776444321 4677777754
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=8.5e-12 Score=111.61 Aligned_cols=40 Identities=25% Similarity=0.263 Sum_probs=19.0
Q ss_pred hcccceeeccccccccccccccccccccCCCCcEEEecCCCCc
Q 016966 329 LQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLA 371 (379)
Q Consensus 329 ~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l 371 (379)
|++|++|.+..|+ +++++.--....+++|+.|.+..++..
T Consensus 300 f~kL~~L~i~~N~---I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 300 FPKLEYLNISENN---IRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cccceeeecccCc---cccccccchhhccchhhhhhccccccc
Confidence 4556666666555 333333211223455555555554443
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.13 E-value=8.2e-12 Score=110.36 Aligned_cols=66 Identities=17% Similarity=0.125 Sum_probs=42.3
Q ss_pred cCcCCCCCCccCCccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecC
Q 016966 76 GCREWSDGSTIKHFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTD 150 (379)
Q Consensus 76 ~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 150 (379)
++.+.+. +.++....+.+..|.+..+|+ +..+++||.|+++.|.|+ .+.++.|.+++.|-.|-+.+
T Consensus 57 GL~eVP~-~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is--------~I~p~AF~GL~~l~~Lvlyg 124 (498)
T KOG4237|consen 57 GLTEVPA-NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS--------FIAPDAFKGLASLLSLVLYG 124 (498)
T ss_pred CcccCcc-cCCCcceEEEeccCCcccCChhhccchhhhceecccccchh--------hcChHhhhhhHhhhHHHhhc
Confidence 5555554 556677788888888877776 347888888888886643 34444455555555544444
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.3e-11 Score=110.40 Aligned_cols=201 Identities=20% Similarity=0.173 Sum_probs=122.8
Q ss_pred CccCCccEEEEeCCCCCCCCC---CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC--CCc---
Q 016966 84 STIKHFTSIVLHGIKPNLLPE---VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI--LPS--- 155 (379)
Q Consensus 84 ~~~~~l~~L~l~~~~~~~~~~---~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--lp~--- 155 (379)
...+++|.+++.++.+...+. ...|++++.|+++.|-+.. .. ....+...+++|+.|+++.|. .|.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~n-----w~-~v~~i~eqLp~Le~LNls~Nrl~~~~~s~ 191 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHN-----WF-PVLKIAEQLPSLENLNLSSNRLSNFISSN 191 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHh-----HH-HHHHHHHhcccchhcccccccccCCcccc
Confidence 345677777887777754442 3377888888888766543 12 223455677888888888877 221
Q ss_pred cccCCCCCcEEEeecCCCCC---cccccCcCCCcEEEeeCC-cCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCC
Q 016966 156 SLGLLSNLRTLSLCSCGLPD---ISFVGYLKKLEILCLRGS-DIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLS 231 (379)
Q Consensus 156 ~i~~l~~L~~L~l~~~~l~~---~~~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~ 231 (379)
.-..+.+|+.|.++.|.+++ ......+++|+.|.+..| .+..-......+..|++|++++|+....-.....+.++
T Consensus 192 ~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~ 271 (505)
T KOG3207|consen 192 TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLP 271 (505)
T ss_pred chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccccccccc
Confidence 12356778888888888776 244456677888888777 33222223445566778888776655443222357777
Q ss_pred CCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccc---cccCCcEEEE
Q 016966 232 HLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGL---LLEKLERYSI 294 (379)
Q Consensus 232 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l 294 (379)
.|+.|.++.+++.+.. .-...........++|+.|.+..|++...++.- .+++|..|.+
T Consensus 272 ~L~~Lnls~tgi~si~----~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 272 GLNQLNLSSTGIASIA----EPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRI 333 (505)
T ss_pred chhhhhccccCcchhc----CCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhc
Confidence 7877777777776543 111112223455677788888777776555422 4566666665
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.04 E-value=1.6e-10 Score=98.85 Aligned_cols=217 Identities=19% Similarity=0.163 Sum_probs=122.6
Q ss_pred CCCceeEEEecCCC------------CCccccCCCCCcEEEeecCCCCCccccc-CcCCCcEEEeeCCcCcccchhhcCC
Q 016966 139 SMIEVRVVNLTDMI------------LPSSLGLLSNLRTLSLCSCGLPDISFVG-YLKKLEILCLRGSDIVKLPVEVGEL 205 (379)
Q Consensus 139 ~l~~L~~L~l~~~~------------lp~~i~~l~~L~~L~l~~~~l~~~~~~~-~l~~L~~L~l~~~~l~~lp~~~~~l 205 (379)
.+..|.+|.++... +|-.+.-+++|..+.++.|.-..+..+. .-+.|+++.+.++.+...|. +-.+
T Consensus 180 f~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~-l~pe 258 (490)
T KOG1259|consen 180 FCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPS-LLPE 258 (490)
T ss_pred hhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeeccccccccc-ccch
Confidence 34566666666654 4445555677777777777654432222 22567788777765543331 1112
Q ss_pred CCCCEEeccC-CCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccc
Q 016966 206 TWLKLLDLRD-CCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGL 284 (379)
Q Consensus 206 ~~L~~L~l~~-~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 284 (379)
..+....-.. ....+..... +.....|+.+++++|.+... -.+..-.|.++.|+++.|.+..+....
T Consensus 259 ~~~~D~~~~E~~t~~G~~~~~-~dTWq~LtelDLS~N~I~~i-----------DESvKL~Pkir~L~lS~N~i~~v~nLa 326 (490)
T KOG1259|consen 259 TILADPSGSEPSTSNGSALVS-ADTWQELTELDLSGNLITQI-----------DESVKLAPKLRRLILSQNRIRTVQNLA 326 (490)
T ss_pred hhhcCccCCCCCccCCceEEe-cchHhhhhhccccccchhhh-----------hhhhhhccceeEEeccccceeeehhhh
Confidence 2222111111 0000111111 23344566666666666542 244445566666666666666555533
Q ss_pred cccCCcEEEEEeecccccCccccc----ceEEEEe-CCcccchHHHHHHhcccceeeccccccccccccccccccccCCC
Q 016966 285 LLEKLERYSIYIRRYFSRKTGIWC----RQFRVEL-NNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSH 359 (379)
Q Consensus 285 ~~~~L~~L~l~~~~~~~~~~~~~~----~~~~L~l-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~ 359 (379)
++++|+.|+++.+... ....|. +-.+|.+ .+.+..-+++..+ -+|.+|++++|+ ++.+...-..+.+|+
T Consensus 327 ~L~~L~~LDLS~N~Ls--~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KL-YSLvnLDl~~N~---Ie~ldeV~~IG~LPC 400 (490)
T KOG1259|consen 327 ELPQLQLLDLSGNLLA--ECVGWHLKLGNIKTLKLAQNKIETLSGLRKL-YSLVNLDLSSNQ---IEELDEVNHIGNLPC 400 (490)
T ss_pred hcccceEeecccchhH--hhhhhHhhhcCEeeeehhhhhHhhhhhhHhh-hhheeccccccc---hhhHHHhcccccccH
Confidence 5666666666433322 222222 2235555 5556666778886 899999999998 777776555667999
Q ss_pred CcEEEecCCCCccCC
Q 016966 360 LKRLRLEGSDLALNP 374 (379)
Q Consensus 360 L~~L~l~~c~~l~~~ 374 (379)
|+.|.+.+||...++
T Consensus 401 LE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 401 LETLRLTGNPLAGSV 415 (490)
T ss_pred HHHHhhcCCCccccc
Confidence 999999999987654
No 30
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.00 E-value=3e-10 Score=114.76 Aligned_cols=104 Identities=24% Similarity=0.329 Sum_probs=85.1
Q ss_pred CccCCccEEEEeCCC--CCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCcc
Q 016966 84 STIKHFTSIVLHGIK--PNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSS 156 (379)
Q Consensus 84 ~~~~~l~~L~l~~~~--~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~ 156 (379)
...+++++|-+..+. +..++. +..++.|+.|++++| .. ...+|..+ +.+-+||+|+++++. +|.+
T Consensus 542 ~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~---~~----l~~LP~~I-~~Li~LryL~L~~t~I~~LP~~ 613 (889)
T KOG4658|consen 542 SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGN---SS----LSKLPSSI-GELVHLRYLDLSDTGISHLPSG 613 (889)
T ss_pred CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCC---Cc----cCcCChHH-hhhhhhhcccccCCCccccchH
Confidence 344579999999886 555555 558999999999984 33 77888876 889999999999999 9999
Q ss_pred ccCCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcC
Q 016966 157 LGLLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDI 195 (379)
Q Consensus 157 i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l 195 (379)
+++|+.|.||++..+.-.. +.....+++|++|.+.....
T Consensus 614 l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~ 654 (889)
T KOG4658|consen 614 LGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSAL 654 (889)
T ss_pred HHHHHhhheeccccccccccccchhhhcccccEEEeecccc
Confidence 9999999999999987444 45555699999999988753
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.98 E-value=1.5e-10 Score=99.02 Aligned_cols=130 Identities=20% Similarity=0.262 Sum_probs=85.3
Q ss_pred CceeEEEecCCC---CCccccCCCCCcEEEeecCCCCCcccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCC
Q 016966 141 IEVRVVNLTDMI---LPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCC 217 (379)
Q Consensus 141 ~~L~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~ 217 (379)
+.|..+||++|. +.++..-.+.++.|+++.|.+.....+..+++|+.|++++|.++++.-.-.++-++++|.++.|.
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~ 363 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNK 363 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhh
Confidence 456667777776 55556666777777777777766555677777777777777766665444466667777776633
Q ss_pred CCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCc
Q 016966 218 FLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPR 282 (379)
Q Consensus 218 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 282 (379)
+..+.. ++.+-+|..|++.+|++.... ....++++|-|+.+.+.+|.+..++.
T Consensus 364 -iE~LSG--L~KLYSLvnLDl~~N~Ie~ld---------eV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 364 -IETLSG--LRKLYSLVNLDLSSNQIEELD---------EVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred -Hhhhhh--hHhhhhheeccccccchhhHH---------HhcccccccHHHHHhhcCCCccccch
Confidence 344333 566677777777777776544 45666777777777777777665554
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.97 E-value=2.9e-11 Score=111.58 Aligned_cols=175 Identities=23% Similarity=0.291 Sum_probs=132.5
Q ss_pred cCCccEEEEeCCCCCCCCCCC-CCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCC
Q 016966 86 IKHFTSIVLHGIKPNLLPEVL-ECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLS 161 (379)
Q Consensus 86 ~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~ 161 (379)
+......+++.|.+..+|.-. .+..|..++++.|. ...+|..+ .++..|.+|+|+.|. +|..+..|+
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~--------~r~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp 144 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNC--------IRTIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP 144 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhcc--------ceecchhh-hhhhHHHHhhhccchhhcCChhhhcCc
Confidence 344556778888887777533 67777888887754 34455544 677888888888887 777776654
Q ss_pred CCcEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecC
Q 016966 162 NLRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGR 240 (379)
Q Consensus 162 ~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 240 (379)
|+.|-+++|+++. |..++.++.|..|+.+.|.+..+|..++.+.+|+.|.+..|. +..+|.+ +..|+ |..|+++.
T Consensus 145 -Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~E-l~~Lp-Li~lDfSc 220 (722)
T KOG0532|consen 145 -LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEE-LCSLP-LIRLDFSC 220 (722)
T ss_pred -ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHH-HhCCc-eeeeeccc
Confidence 7888888888888 888887788888888888888888888888888888888844 5667776 45443 78888888
Q ss_pred CCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccc
Q 016966 241 ESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGL 284 (379)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 284 (379)
|++.. +|..+.+|..|+.|.+.+|.+.+-|..+
T Consensus 221 Nkis~-----------iPv~fr~m~~Lq~l~LenNPLqSPPAqI 253 (722)
T KOG0532|consen 221 NKISY-----------LPVDFRKMRHLQVLQLENNPLQSPPAQI 253 (722)
T ss_pred Cceee-----------cchhhhhhhhheeeeeccCCCCCChHHH
Confidence 87776 5778888888888888888888777666
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.84 E-value=6.5e-10 Score=97.08 Aligned_cols=189 Identities=18% Similarity=0.156 Sum_probs=88.8
Q ss_pred cCCCCCcEEEeecCCCCC--c----ccccCcCCCcEEEeeCCcCcccc--------------hhhcCCCCCCEEeccCCC
Q 016966 158 GLLSNLRTLSLCSCGLPD--I----SFVGYLKKLEILCLRGSDIVKLP--------------VEVGELTWLKLLDLRDCC 217 (379)
Q Consensus 158 ~~l~~L~~L~l~~~~l~~--~----~~~~~l~~L~~L~l~~~~l~~lp--------------~~~~~l~~L~~L~l~~~~ 217 (379)
...++|++|+|+.|-+.. + .-+.++..|++|.+.+|++...- .-++.-++|+++...+|.
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 334466666666665433 2 23345566666666666554111 122334556666555533
Q ss_pred CCcccCh----hhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCC-----ccc-ccc
Q 016966 218 FLKVIPP----NILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLP-----RGL-LLE 287 (379)
Q Consensus 218 ~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-----~~~-~~~ 287 (379)
. ...+. ..+...+.|+.+.+..|.+.... .......+..+++|+.|+++.|-++.-. ..+ .++
T Consensus 169 l-en~ga~~~A~~~~~~~~leevr~~qN~I~~eG------~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~ 241 (382)
T KOG1909|consen 169 L-ENGGATALAEAFQSHPTLEEVRLSQNGIRPEG------VTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWP 241 (382)
T ss_pred c-ccccHHHHHHHHHhccccceEEEecccccCch------hHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccc
Confidence 2 22111 11344456666666655554321 1223445555666666666655444111 111 234
Q ss_pred CCcEEEEEeecccccCcccccceEEEEeCCcccchHHHHHHhcccceeeccccccccccccc-ccc--ccccCCCCcEEE
Q 016966 288 KLERYSIYIRRYFSRKTGIWCRQFRVELNNKICLKDSLIVQLQRIEDLELSELQEQDVDYFR-NEL--VKVGSSHLKRLR 364 (379)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~-~~~--~~~~~~~L~~L~ 364 (379)
+|+.+++..+... =.+...+.+.+.+.+|+|+.|.+.+|. ++.-. ..+ .....|.|+.|+
T Consensus 242 ~L~El~l~dcll~--------------~~Ga~a~~~al~~~~p~L~vl~l~gNe---It~da~~~la~~~~ek~dL~kLn 304 (382)
T KOG1909|consen 242 HLRELNLGDCLLE--------------NEGAIAFVDALKESAPSLEVLELAGNE---ITRDAALALAACMAEKPDLEKLN 304 (382)
T ss_pred hheeecccccccc--------------cccHHHHHHHHhccCCCCceeccCcch---hHHHHHHHHHHHHhcchhhHHhc
Confidence 4444444211111 012222334444446778888887776 22211 111 112367788888
Q ss_pred ecCCCC
Q 016966 365 LEGSDL 370 (379)
Q Consensus 365 l~~c~~ 370 (379)
+++|..
T Consensus 305 LngN~l 310 (382)
T KOG1909|consen 305 LNGNRL 310 (382)
T ss_pred CCcccc
Confidence 877765
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.80 E-value=4.5e-09 Score=98.88 Aligned_cols=99 Identities=30% Similarity=0.421 Sum_probs=47.5
Q ss_pred CceeEEEecCCC---CCccccCCC-CCcEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccC
Q 016966 141 IEVRVVNLTDMI---LPSSLGLLS-NLRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRD 215 (379)
Q Consensus 141 ~~L~~L~l~~~~---lp~~i~~l~-~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~ 215 (379)
..+..|++.++. ++.....+. +|++|+++++.+.. +..+..+++|+.|++++|++.++|...+.++.|+.|++++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~ 195 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSG 195 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccC
Confidence 445555555554 444444442 55555555555544 3445555555555555555555554444455555555555
Q ss_pred CCCCcccChhhhCCCCCCcEEEecCC
Q 016966 216 CCFLKVIPPNILSKLSHLEELYIGRE 241 (379)
Q Consensus 216 ~~~~~~~~~~~l~~l~~L~~L~l~~~ 241 (379)
|. ...+|.. ++....|+.|.+.+|
T Consensus 196 N~-i~~l~~~-~~~~~~L~~l~~~~N 219 (394)
T COG4886 196 NK-ISDLPPE-IELLSALEELDLSNN 219 (394)
T ss_pred Cc-cccCchh-hhhhhhhhhhhhcCC
Confidence 22 3444432 233333555555544
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.78 E-value=5.6e-09 Score=98.24 Aligned_cols=182 Identities=27% Similarity=0.370 Sum_probs=100.4
Q ss_pred EEEeCCCC-CCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCC-ceeEEEecCCC---CCccccCCCCCcEE
Q 016966 92 IVLHGIKP-NLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMI-EVRVVNLTDMI---LPSSLGLLSNLRTL 166 (379)
Q Consensus 92 L~l~~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~---lp~~i~~l~~L~~L 166 (379)
+....+.+ .........+.++.|.+.+|.+ ..+++.. ..+. +|+.|+++++. +|..+..+++|+.|
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i--------~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L 168 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNI--------TDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNL 168 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCccc--------ccCcccc-ccchhhcccccccccchhhhhhhhhcccccccc
Confidence 34444433 2233333445566666666443 2333322 2232 66666666666 44456666667777
Q ss_pred EeecCCCCC-cccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcC
Q 016966 167 SLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVD 245 (379)
Q Consensus 167 ~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 245 (379)
+++.|.+.+ +...+.+++|+.|+++++.+..+|..+..+..|+++.+++|....... . ++.++++..+.+..+.+..
T Consensus 169 ~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~-~-~~~~~~l~~l~l~~n~~~~ 246 (394)
T COG4886 169 DLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLS-S-LSNLKNLSGLELSNNKLED 246 (394)
T ss_pred ccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecch-h-hhhcccccccccCCceeee
Confidence 777766666 444446666666777776666666655555556666666643222222 2 4556666666555554433
Q ss_pred hhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccccccCCcEEEEE
Q 016966 246 WEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIY 295 (379)
Q Consensus 246 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~ 295 (379)
.+..++.++.++.|++.+|.++.++......+|+.++++
T Consensus 247 -----------~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s 285 (394)
T COG4886 247 -----------LPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLS 285 (394)
T ss_pred -----------ccchhccccccceeccccccccccccccccCccCEEecc
Confidence 234555556666666666666655553245566666553
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.66 E-value=6.2e-09 Score=91.06 Aligned_cols=181 Identities=17% Similarity=0.169 Sum_probs=99.0
Q ss_pred CCccEEEEeCCCC--CCCCC----CCCCCCccEEEeecCCCCCCCCCCCccc-Ch--------hhhhCCCceeEEEecCC
Q 016966 87 KHFTSIVLHGIKP--NLLPE----VLECPQLELLFIRGGGRDDPWETSPVTI-PD--------NFFKSMIEVRVVNLTDM 151 (379)
Q Consensus 87 ~~l~~L~l~~~~~--~~~~~----~~~~~~L~~L~l~~n~~~~~~~~~~~~~-~~--------~~~~~l~~L~~L~l~~~ 151 (379)
++++.+++++|.+ +.++. +.++..|+.|.+.+|.+... .... .. .-..+-+.||+++.+.|
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~----ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPE----AGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChh----HHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 4677777777766 23332 12566677777777655332 1111 00 01123456777777776
Q ss_pred C--------CCccccCCCCCcEEEeecCCCCC------cccccCcCCCcEEEeeCCcCc-----ccchhhcCCCCCCEEe
Q 016966 152 I--------LPSSLGLLSNLRTLSLCSCGLPD------ISFVGYLKKLEILCLRGSDIV-----KLPVEVGELTWLKLLD 212 (379)
Q Consensus 152 ~--------lp~~i~~l~~L~~L~l~~~~l~~------~~~~~~l~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~ 212 (379)
. +...+...+.|+.+.++.|.|.. ...+..+++|++||++.|.++ .+...+..++.|+.|+
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN 247 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence 6 22334555667777777776544 144556677777777777554 3344455666677777
Q ss_pred ccCCCCCcccChh----hhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCC
Q 016966 213 LRDCCFLKVIPPN----ILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDV 277 (379)
Q Consensus 213 l~~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 277 (379)
+++|.....-... .-...|+|+.|.+.+|.++... ...+...+...+.|++|.+++|.+
T Consensus 248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da------~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDA------ALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccccccHHHHHHHHhccCCCCceeccCcchhHHHH------HHHHHHHHhcchhhHHhcCCcccc
Confidence 7776543332211 1233567777777777665432 112233344466677777776665
No 37
>PLN03150 hypothetical protein; Provisional
Probab=98.61 E-value=1.4e-07 Score=93.50 Aligned_cols=106 Identities=25% Similarity=0.292 Sum_probs=75.3
Q ss_pred CCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCc-ccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEe
Q 016966 162 NLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIV-KLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYI 238 (379)
Q Consensus 162 ~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 238 (379)
.++.|+|+++.+.. |..++++++|+.|++++|.+. .+|..++.+++|+.|++++|...+.+|.. ++++++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 36677777777765 677777888888888888776 67777778888888888887777777766 677888888888
Q ss_pred cCCCCcChhhhhhcccccchHhhcCC-CCCcEEEeeccCCC
Q 016966 239 GRESFVDWEEEVEGVKNASLEELKHL-PNLTSLEVHVRDVS 278 (379)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~ 278 (379)
++|.+.+. ++..++.+ .++..+++.+|...
T Consensus 498 s~N~l~g~----------iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 498 NGNSLSGR----------VPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred cCCccccc----------CChHHhhccccCceEEecCCccc
Confidence 87776643 35555443 35667777766543
No 38
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=1.2e-08 Score=87.58 Aligned_cols=37 Identities=22% Similarity=0.239 Sum_probs=27.2
Q ss_pred hcccceeeccccccccccccccccc-cccCCCCcEEEecCCC
Q 016966 329 LQRIEDLELSELQEQDVDYFRNELV-KVGSSHLKRLRLEGSD 369 (379)
Q Consensus 329 ~~~L~~L~l~~~~~~~l~~~~~~~~-~~~~~~L~~L~l~~c~ 369 (379)
|+.|++|.+++|. . .+|..+. ....|+|.+|++.+|-
T Consensus 337 f~~L~~lSlsRCY--~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 337 FNYLQHLSLSRCY--D--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred cchheeeehhhhc--C--CChHHeeeeccCcceEEEEecccc
Confidence 6899999999998 2 2333332 3458999999998874
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.48 E-value=4.9e-07 Score=89.56 Aligned_cols=103 Identities=23% Similarity=0.325 Sum_probs=76.9
Q ss_pred CCcEEEeeCCcCc-ccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhc
Q 016966 184 KLEILCLRGSDIV-KLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELK 262 (379)
Q Consensus 184 ~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~ 262 (379)
.++.|+++++.+. .+|..+..+++|+.|++++|...+.+|.. ++.+++|+.|++++|.+.+. .+..++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~LdLs~N~lsg~----------iP~~l~ 487 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSFNGS----------IPESLG 487 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECCCCCCCCC----------CchHHh
Confidence 3677888888776 67778888888888888888777777776 68888888888888877654 467788
Q ss_pred CCCCCcEEEeeccCCC-CCCccc--cccCCcEEEEEee
Q 016966 263 HLPNLTSLEVHVRDVS-SLPRGL--LLEKLERYSIYIR 297 (379)
Q Consensus 263 ~l~~L~~L~l~~~~~~-~~~~~~--~~~~L~~L~l~~~ 297 (379)
.+++|+.|++++|.+. .+|..+ ...++..+++..+
T Consensus 488 ~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 488 QLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred cCCCCCEEECcCCcccccCChHHhhccccCceEEecCC
Confidence 8888888888888877 677665 2345556665433
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=3e-09 Score=91.10 Aligned_cols=172 Identities=26% Similarity=0.247 Sum_probs=110.1
Q ss_pred CCccEEEEeCCCC--CCCCCC-CCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC-CC-----ccc
Q 016966 87 KHFTSIVLHGIKP--NLLPEV-LECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI-LP-----SSL 157 (379)
Q Consensus 87 ~~l~~L~l~~~~~--~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-lp-----~~i 157 (379)
.++++|+++...+ .++..+ ..|.+|+.|.+.++.+.|. +... +.+-.+|+.|+++.|+ +. --+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~-------I~~~-iAkN~~L~~lnlsm~sG~t~n~~~ll~ 256 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDP-------IVNT-IAKNSNLVRLNLSMCSGFTENALQLLL 256 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcH-------HHHH-HhccccceeeccccccccchhHHHHHH
Confidence 3577888887766 223332 3778888888888766443 3223 3456788888888887 22 125
Q ss_pred cCCCCCcEEEeecCCCCC--ccc-ccCc-CCCcEEEeeCCc----CcccchhhcCCCCCCEEeccCCCCCcccChhhhCC
Q 016966 158 GLLSNLRTLSLCSCGLPD--ISF-VGYL-KKLEILCLRGSD----IVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSK 229 (379)
Q Consensus 158 ~~l~~L~~L~l~~~~l~~--~~~-~~~l-~~L~~L~l~~~~----l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~ 229 (379)
.+++.|..|++++|.+.. ... +.+. .+|..|++++|. .+.+..-..++|+|.+|++++|..+..--...+.+
T Consensus 257 ~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k 336 (419)
T KOG2120|consen 257 SSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK 336 (419)
T ss_pred HhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh
Confidence 667788888888887544 211 1221 467888888872 22444445678888888888876555433333677
Q ss_pred CCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeecc
Q 016966 230 LSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVR 275 (379)
Q Consensus 230 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 275 (379)
++.|++|.++.|...... ..-.+...|.|.+|++.++
T Consensus 337 f~~L~~lSlsRCY~i~p~---------~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 337 FNYLQHLSLSRCYDIIPE---------TLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred cchheeeehhhhcCCChH---------HeeeeccCcceEEEEeccc
Confidence 888888888877654322 3455677788888887654
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.37 E-value=4.5e-07 Score=60.63 Aligned_cols=58 Identities=29% Similarity=0.479 Sum_probs=29.5
Q ss_pred CCcEEEeeCCcCcccch-hhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCC
Q 016966 184 KLEILCLRGSDIVKLPV-EVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRES 242 (379)
Q Consensus 184 ~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 242 (379)
+|++|++++|+++.+|. .+..+++|++|++++|.. ..++...+..+++|+.|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l-~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNL-TSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSE-SEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCcc-CccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555555553 344555555555555332 33333335555555555555543
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.37 E-value=3.5e-07 Score=61.18 Aligned_cols=57 Identities=28% Similarity=0.400 Sum_probs=43.6
Q ss_pred CCCcEEEeecCCCCC-c-ccccCcCCCcEEEeeCCcCcccch-hhcCCCCCCEEeccCCC
Q 016966 161 SNLRTLSLCSCGLPD-I-SFVGYLKKLEILCLRGSDIVKLPV-EVGELTWLKLLDLRDCC 217 (379)
Q Consensus 161 ~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~ 217 (379)
++|++|++++|.++. + ..+..+++|++|++++|.+..+++ .+..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 467788888887777 3 567778888888888888887775 56788888888887764
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.36 E-value=2.9e-09 Score=101.31 Aligned_cols=174 Identities=20% Similarity=0.214 Sum_probs=109.5
Q ss_pred CCCccCCccEEEEeCCCCCCCCCCCC-CCCccEEEeecCCCCCCCCCCCcccChhhhh----------CCCceeEEEecC
Q 016966 82 DGSTIKHFTSIVLHGIKPNLLPEVLE-CPQLELLFIRGGGRDDPWETSPVTIPDNFFK----------SMIEVRVVNLTD 150 (379)
Q Consensus 82 ~~~~~~~l~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~----------~l~~L~~L~l~~ 150 (379)
.+..++.+|+|.+.+|++.....+.. -..|+.|+-.+ ...-...+|. ..-.|.+.+.++
T Consensus 104 ~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~----------Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsy 173 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHN----------SLDALRHVFASCGGDISNSPVWNKLATASFSY 173 (1096)
T ss_pred eeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhc----------cHHHHHHHHHHhccccccchhhhhHhhhhcch
Confidence 34567888999998888744333221 12233333322 0000011111 123466677777
Q ss_pred CC---CCccccCCCCCcEEEeecCCCCCcccccCcCCCcEEEeeCCcCcccchh-hcCCCCCCEEeccCCCCCcccChhh
Q 016966 151 MI---LPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVE-VGELTWLKLLDLRDCCFLKVIPPNI 226 (379)
Q Consensus 151 ~~---lp~~i~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~ 226 (379)
|. +-.++.-++.|+.|+|+.|++.....+..|++|++||+++|.+..+|.- ...+ +|+.|.+++|.. ..+-.
T Consensus 174 N~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l-~tL~g-- 249 (1096)
T KOG1859|consen 174 NRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNAL-TTLRG-- 249 (1096)
T ss_pred hhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhh-hheeeeecccHH-Hhhhh--
Confidence 77 5556777788888888888887766777888888888888888877742 2233 388888877553 33332
Q ss_pred hCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCC
Q 016966 227 LSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVS 278 (379)
Q Consensus 227 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 278 (379)
+.++.+|+.|+++.|-+.+.. -+..+..+..|+.|.+.+|.+-
T Consensus 250 ie~LksL~~LDlsyNll~~hs---------eL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 250 IENLKSLYGLDLSYNLLSEHS---------ELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred HHhhhhhhccchhHhhhhcch---------hhhHHHHHHHHHHHhhcCCccc
Confidence 677888888888888776544 3555566667778888777654
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.21 E-value=1.7e-07 Score=88.54 Aligned_cols=104 Identities=29% Similarity=0.335 Sum_probs=47.0
Q ss_pred CCCceeEEEecCCC---CCccccCCCCCcEEEeecCCCCCcccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccC
Q 016966 139 SMIEVRVVNLTDMI---LPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRD 215 (379)
Q Consensus 139 ~l~~L~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~ 215 (379)
.+++|..|++.++. +...+..+.+|++|++++|.|+....+..++.|+.|++.+|.++.++ .+..++.|+.+++++
T Consensus 93 ~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~~ 171 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLSY 171 (414)
T ss_pred cccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhcc-CCccchhhhcccCCc
Confidence 34445555555544 11114445555555555555555444444444555555555554444 233345555555555
Q ss_pred CCCCcccChhhhCCCCCCcEEEecCCCCc
Q 016966 216 CCFLKVIPPNILSKLSHLEELYIGRESFV 244 (379)
Q Consensus 216 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 244 (379)
|.....-+.. +..+.+++.+.+.+|.+.
T Consensus 172 n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 172 NRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred chhhhhhhhh-hhhccchHHHhccCCchh
Confidence 3322211101 134445555555544443
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=6e-07 Score=77.28 Aligned_cols=176 Identities=20% Similarity=0.219 Sum_probs=111.1
Q ss_pred CccEEEEeCCCCCCCCCC---C-CCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCCCCcccc----C
Q 016966 88 HFTSIVLHGIKPNLLPEV---L-ECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMILPSSLG----L 159 (379)
Q Consensus 88 ~l~~L~l~~~~~~~~~~~---~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~lp~~i~----~ 159 (379)
.+.-+.+.++.+.....+ . .+..++.+++.+|.+++ +..+ ..++.+|+.|++|++++|++...|+ .
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSd-----WseI-~~ile~lP~l~~LNls~N~L~s~I~~lp~p 119 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISD-----WSEI-GAILEQLPALTTLNLSCNSLSSDIKSLPLP 119 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhcc-----HHHH-HHHHhcCccceEeeccCCcCCCccccCccc
Confidence 344556666766544432 2 67788889999988766 3333 3466888999999999988222233 4
Q ss_pred CCCCcEEEeecCCCCC---cccccCcCCCcEEEeeCCcCcccc---hhh---------------------------cCCC
Q 016966 160 LSNLRTLSLCSCGLPD---ISFVGYLKKLEILCLRGSDIVKLP---VEV---------------------------GELT 206 (379)
Q Consensus 160 l~~L~~L~l~~~~l~~---~~~~~~l~~L~~L~l~~~~l~~lp---~~~---------------------------~~l~ 206 (379)
+.+|+.|-+.++.+.. -..+..++.++.|+++.|.+..+- ..+ ..+|
T Consensus 120 ~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fp 199 (418)
T KOG2982|consen 120 LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFP 199 (418)
T ss_pred ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcc
Confidence 5688888888888776 355667788888888777443111 011 1123
Q ss_pred CCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCC
Q 016966 207 WLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVS 278 (379)
Q Consensus 207 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 278 (379)
++..+.+..|..-..-.......++.+-.|.++.+++.+|. ..+++..++.|+.|.+..+.+.
T Consensus 200 nv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswa---------svD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 200 NVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWA---------SVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred cchheeeecCcccchhhcccCCCCCcchhhhhcccccccHH---------HHHHHcCCchhheeeccCCccc
Confidence 33333333332211111111344566667788888888876 6788999999999999887765
No 46
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.15 E-value=9.2e-07 Score=75.21 Aligned_cols=187 Identities=16% Similarity=0.130 Sum_probs=111.4
Q ss_pred ccccCcCCCcEEEeeCCcCc-ccch----hhcCCCCCCEEeccCCCCCcccChhh-------------hCCCCCCcEEEe
Q 016966 177 SFVGYLKKLEILCLRGSDIV-KLPV----EVGELTWLKLLDLRDCCFLKVIPPNI-------------LSKLSHLEELYI 238 (379)
Q Consensus 177 ~~~~~l~~L~~L~l~~~~l~-~lp~----~~~~l~~L~~L~l~~~~~~~~~~~~~-------------l~~l~~L~~L~l 238 (379)
+.+-+|++|++.+++.|.+. +.|+ .+..-+.|.||.+++|. .+.+...- ..+-|.|++..+
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vic 164 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC 164 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence 45556777777777777554 3333 35566777777777753 23222211 245678899988
Q ss_pred cCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCC--CCccc-----cccCCcEEEEEeeccc-------ccCc
Q 016966 239 GRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSS--LPRGL-----LLEKLERYSIYIRRYF-------SRKT 304 (379)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~-----~~~~L~~L~l~~~~~~-------~~~~ 304 (379)
..|++...+ ......-+....+|+.+.+..|.+.. +...+ .+.+|+.|++..+.+. ....
T Consensus 165 grNRlengs------~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al 238 (388)
T COG5238 165 GRNRLENGS------KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADAL 238 (388)
T ss_pred ccchhccCc------HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHh
Confidence 888876532 11122334444688999998888762 22211 4688999988655433 3446
Q ss_pred ccccceEEEEeCCcccchHH---HHHH-----hcccceeeccccccccccccc-----cccccccCCCCcEEEecCCCCc
Q 016966 305 GIWCRQFRVELNNKICLKDS---LIVQ-----LQRIEDLELSELQEQDVDYFR-----NELVKVGSSHLKRLRLEGSDLA 371 (379)
Q Consensus 305 ~~~~~~~~L~l~~~~~~~~~---~~~~-----~~~L~~L~l~~~~~~~l~~~~-----~~~~~~~~~~L~~L~l~~c~~l 371 (379)
+.|+..+.|.++.|.....+ +... +|+|..|-..+|. .-..+. .++..+++|-|..|.+.+|.+-
T Consensus 239 ~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne--~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 239 CEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNE--RRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred cccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhh--hcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 77888778888444432222 2211 4778888888776 222211 1223456888888888877654
Q ss_pred c
Q 016966 372 L 372 (379)
Q Consensus 372 ~ 372 (379)
+
T Consensus 317 E 317 (388)
T COG5238 317 E 317 (388)
T ss_pred h
Confidence 3
No 47
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.15 E-value=1.2e-06 Score=86.86 Aligned_cols=131 Identities=18% Similarity=0.189 Sum_probs=71.3
Q ss_pred CCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC-----CCccccCCCCCcEEEeecCCCCCcccccCcC
Q 016966 109 PQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI-----LPSSLGLLSNLRTLSLCSCGLPDISFVGYLK 183 (379)
Q Consensus 109 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-----lp~~i~~l~~L~~L~l~~~~l~~~~~~~~l~ 183 (379)
.+|+.|+++|... . ...-+..+...+|.|+.|.+.+-. +..-..++++|++||++++.++....+++|+
T Consensus 122 ~nL~~LdI~G~~~--~----s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~Lk 195 (699)
T KOG3665|consen 122 QNLQHLDISGSEL--F----SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLK 195 (699)
T ss_pred HhhhhcCccccch--h----hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccc
Confidence 4566666665211 1 222333344456666666666654 1122345667777777777776666777777
Q ss_pred CCcEEEeeCCcCcccc--hhhcCCCCCCEEeccCCCCCccc--Chh---hhCCCCCCcEEEecCCCCcC
Q 016966 184 KLEILCLRGSDIVKLP--VEVGELTWLKLLDLRDCCFLKVI--PPN---ILSKLSHLEELYIGRESFVD 245 (379)
Q Consensus 184 ~L~~L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~~~~~--~~~---~l~~l~~L~~L~l~~~~~~~ 245 (379)
+|++|.+.+-.+..-. ..+.+|++|++||+|........ ... --..+|+|+.|+.+++.+..
T Consensus 196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 7777777665554322 25566777777777664322221 100 01336677777766655543
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=1.9e-06 Score=74.30 Aligned_cols=79 Identities=27% Similarity=0.376 Sum_probs=51.7
Q ss_pred hCCCceeEEEecCCC------CCccccCCCCCcEEEeecCCCCC-cccc-cCcCCCcEEEeeCCcCc--ccchhhcCCCC
Q 016966 138 KSMIEVRVVNLTDMI------LPSSLGLLSNLRTLSLCSCGLPD-ISFV-GYLKKLEILCLRGSDIV--KLPVEVGELTW 207 (379)
Q Consensus 138 ~~l~~L~~L~l~~~~------lp~~i~~l~~L~~L~l~~~~l~~-~~~~-~~l~~L~~L~l~~~~l~--~lp~~~~~l~~ 207 (379)
.....++.+||.+|. +-.-+.+|++|++|+++.|.+.. +..+ ..+.+|++|.+.++.+. .....+..+|+
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 456677777777776 22234567777777777777665 4433 35567777777777554 45555667777
Q ss_pred CCEEeccCC
Q 016966 208 LKLLDLRDC 216 (379)
Q Consensus 208 L~~L~l~~~ 216 (379)
++.|+++.|
T Consensus 148 vtelHmS~N 156 (418)
T KOG2982|consen 148 VTELHMSDN 156 (418)
T ss_pred hhhhhhccc
Confidence 777777765
No 49
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.09 E-value=8.3e-07 Score=87.97 Aligned_cols=147 Identities=20% Similarity=0.171 Sum_probs=105.1
Q ss_pred cCCccEEEEeCCCC--CCCC-CC-CCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC--CCccccC
Q 016966 86 IKHFTSIVLHGIKP--NLLP-EV-LECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI--LPSSLGL 159 (379)
Q Consensus 86 ~~~l~~L~l~~~~~--~~~~-~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--lp~~i~~ 159 (379)
..++++|+|++... ..-+ .. .-+|.|++|.+.+-.+. ..--...+.++++|+.||++++. -..++++
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~-------~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~ 193 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFD-------NDDFSQLCASFPNLRSLDISGTNISNLSGISR 193 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceec-------chhHHHHhhccCccceeecCCCCccCcHHHhc
Confidence 45788999987544 1111 22 27899999999993332 11123456789999999999999 3368999
Q ss_pred CCCCcEEEeecCCCCC---cccccCcCCCcEEEeeCCcCcccc-------hhhcCCCCCCEEeccCCCCCcccChhhhCC
Q 016966 160 LSNLRTLSLCSCGLPD---ISFVGYLKKLEILCLRGSDIVKLP-------VEVGELTWLKLLDLRDCCFLKVIPPNILSK 229 (379)
Q Consensus 160 l~~L~~L~l~~~~l~~---~~~~~~l~~L~~L~l~~~~l~~lp-------~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~ 229 (379)
|++|+.|.+.+-.+.. ...+..|++|++||++.......+ +.-..+|+||.||.++......+-...+..
T Consensus 194 LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~s 273 (699)
T KOG3665|consen 194 LKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNS 273 (699)
T ss_pred cccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHh
Confidence 9999999999988776 578889999999999997444222 123459999999999976666655554555
Q ss_pred CCCCcEEEec
Q 016966 230 LSHLEELYIG 239 (379)
Q Consensus 230 l~~L~~L~l~ 239 (379)
-++|+...+.
T Consensus 274 H~~L~~i~~~ 283 (699)
T KOG3665|consen 274 HPNLQQIAAL 283 (699)
T ss_pred CccHhhhhhh
Confidence 5666555433
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.07 E-value=5.5e-07 Score=85.13 Aligned_cols=170 Identities=25% Similarity=0.279 Sum_probs=84.5
Q ss_pred CccCCccEEEEeCCCCCCCCC-CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC--CCccccCC
Q 016966 84 STIKHFTSIVLHGIKPNLLPE-VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI--LPSSLGLL 160 (379)
Q Consensus 84 ~~~~~l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--lp~~i~~l 160 (379)
..++++..+++.+|.+..+.. ...+++|+.|++++|.+.+ +.. +..++.|+.|++.+|. -...+..+
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~--------i~~--l~~l~~L~~L~l~~N~i~~~~~~~~l 161 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITK--------LEG--LSTLTLLKELNLSGNLISDISGLESL 161 (414)
T ss_pred ccccceeeeeccccchhhcccchhhhhcchheecccccccc--------ccc--hhhccchhhheeccCcchhccCCccc
Confidence 345566666666666655555 4456666666666655433 111 2344456666666665 22334445
Q ss_pred CCCcEEEeecCCCCCccc--ccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCC--CcEE
Q 016966 161 SNLRTLSLCSCGLPDISF--VGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSH--LEEL 236 (379)
Q Consensus 161 ~~L~~L~l~~~~l~~~~~--~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~--L~~L 236 (379)
..|+.+++++|.+...+. +..+.+++.+.+.++.+..+. .+..+..+..+.+..+.....-+ +..++. |+.+
T Consensus 162 ~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~~~~~---l~~~~~~~L~~l 237 (414)
T KOG0531|consen 162 KSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKISKLEG---LNELVMLHLREL 237 (414)
T ss_pred hhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccceeccC---cccchhHHHHHH
Confidence 666666666666555322 455566666666666554333 22222233333333322221111 122222 5666
Q ss_pred EecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCC
Q 016966 237 YIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVS 278 (379)
Q Consensus 237 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 278 (379)
++.++++... +..+..+..+..|++..+.+.
T Consensus 238 ~l~~n~i~~~-----------~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 238 YLSGNRISRS-----------PEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred hcccCccccc-----------cccccccccccccchhhcccc
Confidence 6666665541 134444555555555555443
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.07 E-value=5.8e-06 Score=50.84 Aligned_cols=38 Identities=29% Similarity=0.366 Sum_probs=17.6
Q ss_pred CCcEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccc
Q 016966 162 NLRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLP 199 (379)
Q Consensus 162 ~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp 199 (379)
+|++|++++|.++. ++.+++|++|++|++++|+++.++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 44555555555555 333555555555555555444443
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.97 E-value=1.8e-05 Score=64.57 Aligned_cols=84 Identities=23% Similarity=0.295 Sum_probs=36.1
Q ss_pred CCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcC
Q 016966 184 KLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKH 263 (379)
Q Consensus 184 ~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~ 263 (379)
+...+++++|.+..++ .+..++.|.+|.+++|..+..-|.- -.-+++|..|.+.+|++.... -+.-+..
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L-~~~~p~l~~L~LtnNsi~~l~---------dl~pLa~ 111 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDL-DTFLPNLKTLILTNNSIQELG---------DLDPLAS 111 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCCcceeeccch-hhhccccceEEecCcchhhhh---------hcchhcc
Confidence 3444444444444333 3344444444444443333322221 122344555555555444433 2333444
Q ss_pred CCCCcEEEeeccCCC
Q 016966 264 LPNLTSLEVHVRDVS 278 (379)
Q Consensus 264 l~~L~~L~l~~~~~~ 278 (379)
||+|++|.+-+|.++
T Consensus 112 ~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 112 CPKLEYLTLLGNPVE 126 (233)
T ss_pred CCccceeeecCCchh
Confidence 455555555555444
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.92 E-value=6e-05 Score=69.41 Aligned_cols=72 Identities=15% Similarity=0.258 Sum_probs=39.4
Q ss_pred cCCCCCcEEEeecCCCCCcccccCcCCCcEEEeeCC-cCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEE
Q 016966 158 GLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGS-DIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEEL 236 (379)
Q Consensus 158 ~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L 236 (379)
..+.++++|++++|.++..+. -..+|++|.+++| .++.+|..+ .++|++|.+++|..+..+|. +|+.|
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~-------sLe~L 117 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPV--LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE-------SVRSL 117 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCC--CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc-------ccceE
Confidence 345666777777776655221 1235777777665 555555433 24567777766644444442 35555
Q ss_pred EecC
Q 016966 237 YIGR 240 (379)
Q Consensus 237 ~l~~ 240 (379)
.+..
T Consensus 118 ~L~~ 121 (426)
T PRK15386 118 EIKG 121 (426)
T ss_pred EeCC
Confidence 5543
No 54
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.89 E-value=4.9e-07 Score=86.57 Aligned_cols=98 Identities=21% Similarity=0.203 Sum_probs=56.5
Q ss_pred CCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcC
Q 016966 184 KLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKH 263 (379)
Q Consensus 184 ~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~ 263 (379)
.|.+.+.++|.+..+-.++.-++.|++|++++|+....- . +..++.|.+|++++|.++..+ -+...+
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~-Lr~l~~LkhLDlsyN~L~~vp---------~l~~~g- 231 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--N-LRRLPKLKHLDLSYNCLRHVP---------QLSMVG- 231 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--H-HHhcccccccccccchhcccc---------ccchhh-
Confidence 455666666666655556666666777777765543332 2 566667777777766665432 111111
Q ss_pred CCCCcEEEeeccCCCCCCccccccCCcEEEEE
Q 016966 264 LPNLTSLEVHVRDVSSLPRGLLLEKLERYSIY 295 (379)
Q Consensus 264 l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~ 295 (379)
+ +|..|.+++|.++.+.....+.+|+.|+++
T Consensus 232 c-~L~~L~lrnN~l~tL~gie~LksL~~LDls 262 (1096)
T KOG1859|consen 232 C-KLQLLNLRNNALTTLRGIENLKSLYGLDLS 262 (1096)
T ss_pred h-hheeeeecccHHHhhhhHHhhhhhhccchh
Confidence 1 366666666666665554456666666663
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.84 E-value=2.8e-05 Score=47.80 Aligned_cols=36 Identities=36% Similarity=0.458 Sum_probs=27.0
Q ss_pred CCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCC
Q 016966 183 KKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCF 218 (379)
Q Consensus 183 ~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~ 218 (379)
++|++|++++|+++.+|..+++|++|++|++++|..
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence 468888888888888887788888888888888653
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.71 E-value=0.00022 Score=65.72 Aligned_cols=128 Identities=22% Similarity=0.283 Sum_probs=80.1
Q ss_pred hCCCceeEEEecCCC---CCccccCCCCCcEEEeecCC-CCC-cccccCcCCCcEEEeeCC-cCcccchhhcCCCCCCEE
Q 016966 138 KSMIEVRVVNLTDMI---LPSSLGLLSNLRTLSLCSCG-LPD-ISFVGYLKKLEILCLRGS-DIVKLPVEVGELTWLKLL 211 (379)
Q Consensus 138 ~~l~~L~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~-l~~-~~~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L 211 (379)
..+++++.|++++|. +|. --.+|+.|.+++|. ++. |..+ ..+|++|++++| .+..+|. .|++|
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L 117 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSL 117 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceE
Confidence 347899999999997 662 22369999999876 555 5444 358999999999 7878885 46667
Q ss_pred eccCCC--CCcccChhhhCCCCCCcEEEecCCCCc-ChhhhhhcccccchHhhcCC-CCCcEEEeeccCCCCCCcccccc
Q 016966 212 DLRDCC--FLKVIPPNILSKLSHLEELYIGRESFV-DWEEEVEGVKNASLEELKHL-PNLTSLEVHVRDVSSLPRGLLLE 287 (379)
Q Consensus 212 ~l~~~~--~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~ 287 (379)
++..+. .+..+|. +|+.|.+..+... ... .+. .+ ++|+.|.+.+|....+|.. ...
T Consensus 118 ~L~~n~~~~L~~LPs-------sLk~L~I~~~n~~~~~~---------lp~---~LPsSLk~L~Is~c~~i~LP~~-LP~ 177 (426)
T PRK15386 118 EIKGSATDSIKNVPN-------GLTSLSINSYNPENQAR---------IDN---LISPSLKTLSLTGCSNIILPEK-LPE 177 (426)
T ss_pred EeCCCCCcccccCcc-------hHhheeccccccccccc---------ccc---ccCCcccEEEecCCCcccCccc-ccc
Confidence 665532 2333443 4666666432211 000 010 12 5788888887776555543 235
Q ss_pred CCcEEEEEe
Q 016966 288 KLERYSIYI 296 (379)
Q Consensus 288 ~L~~L~l~~ 296 (379)
+|+.|.+..
T Consensus 178 SLk~L~ls~ 186 (426)
T PRK15386 178 SLQSITLHI 186 (426)
T ss_pred cCcEEEecc
Confidence 777777743
No 57
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.68 E-value=9e-05 Score=63.39 Aligned_cols=143 Identities=15% Similarity=0.159 Sum_probs=94.6
Q ss_pred cCCCCCcEEEeecCCCCC--c----ccccCcCCCcEEEeeCCcCc----ccch-------hhcCCCCCCEEeccCCCCCc
Q 016966 158 GLLSNLRTLSLCSCGLPD--I----SFVGYLKKLEILCLRGSDIV----KLPV-------EVGELTWLKLLDLRDCCFLK 220 (379)
Q Consensus 158 ~~l~~L~~L~l~~~~l~~--~----~~~~~l~~L~~L~l~~~~l~----~lp~-------~~~~l~~L~~L~l~~~~~~~ 220 (379)
..+..+..+++++|.|.. . ..+.+-.+|+..+++..... +++. .+-++|+|+..++++|-+..
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 335566677777777654 2 33444567777777765222 3333 45689999999999998877
Q ss_pred ccChhh---hCCCCCCcEEEecCCCCcChhhhhhcccc---cchHhhcCCCCCcEEEeeccCCCCCCccc------cccC
Q 016966 221 VIPPNI---LSKLSHLEELYIGRESFVDWEEEVEGVKN---ASLEELKHLPNLTSLEVHVRDVSSLPRGL------LLEK 288 (379)
Q Consensus 221 ~~~~~~---l~~l~~L~~L~l~~~~~~~~~~~~~~~~~---~~~~~l~~l~~L~~L~l~~~~~~~~~~~~------~~~~ 288 (379)
..|... +++-+.|.+|.+.+|.+......-.|..- +........|.|+.+....|.+...|... .-.+
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~ 186 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHEN 186 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcC
Confidence 777542 67778999999999988754422222110 12233446688999999988888766543 1258
Q ss_pred CcEEEEEeeccc
Q 016966 289 LERYSIYIRRYF 300 (379)
Q Consensus 289 L~~L~l~~~~~~ 300 (379)
|+.+.+..++..
T Consensus 187 lk~vki~qNgIr 198 (388)
T COG5238 187 LKEVKIQQNGIR 198 (388)
T ss_pred ceeEEeeecCcC
Confidence 889988777665
No 58
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.66 E-value=3.1e-06 Score=76.22 Aligned_cols=40 Identities=20% Similarity=0.101 Sum_probs=25.1
Q ss_pred cccceeeccccccccccccccccccccCCCCcEEEecCCCCcc
Q 016966 330 QRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLAL 372 (379)
Q Consensus 330 ~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~ 372 (379)
..|+.|.+.+|+ .+.+-.-.. ...+++|+++++.+|...+
T Consensus 401 ~~l~~lEL~n~p--~i~d~~Le~-l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 401 EGLEVLELDNCP--LITDATLEH-LSICRNLERIELIDCQDVT 440 (483)
T ss_pred cccceeeecCCC--CchHHHHHH-HhhCcccceeeeechhhhh
Confidence 667777888777 444333222 2347778888777776654
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.65 E-value=4.8e-06 Score=63.63 Aligned_cols=94 Identities=15% Similarity=0.195 Sum_probs=47.1
Q ss_pred cccCcCCCcEEEeeCCcCcccchhhc-CCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhccccc
Q 016966 178 FVGYLKKLEILCLRGSDIVKLPVEVG-ELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNA 256 (379)
Q Consensus 178 ~~~~l~~L~~L~l~~~~l~~lp~~~~-~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 256 (379)
.+.+...|...++++|.+..+|..+. +.+.+++|++.+|. +.++|.+ +..++.|+.|+++.|++..
T Consensus 48 ~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE-~Aam~aLr~lNl~~N~l~~----------- 114 (177)
T KOG4579|consen 48 MLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEE-LAAMPALRSLNLRFNPLNA----------- 114 (177)
T ss_pred HHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHH-HhhhHHhhhcccccCcccc-----------
Confidence 33444455555555555555554443 23345555555533 4455555 4555555555555555543
Q ss_pred chHhhcCCCCCcEEEeeccCCCCCCccc
Q 016966 257 SLEELKHLPNLTSLEVHVRDVSSLPRGL 284 (379)
Q Consensus 257 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 284 (379)
.+..+..+.+|-.|+...|....++-..
T Consensus 115 ~p~vi~~L~~l~~Lds~~na~~eid~dl 142 (177)
T KOG4579|consen 115 EPRVIAPLIKLDMLDSPENARAEIDVDL 142 (177)
T ss_pred chHHHHHHHhHHHhcCCCCccccCcHHH
Confidence 2333434455555555555555555443
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.62 E-value=0.00014 Score=59.49 Aligned_cols=97 Identities=18% Similarity=0.176 Sum_probs=59.9
Q ss_pred CccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC-----CCccccCCCC
Q 016966 88 HFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI-----LPSSLGLLSN 162 (379)
Q Consensus 88 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-----lp~~i~~l~~ 162 (379)
....+++++|++..++.+..++.|.+|.+..|.++. +.+.+-..+++|.+|.+.+|+ -...+..+++
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~--------I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~ 114 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITR--------IDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPK 114 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCccee--------eccchhhhccccceEEecCcchhhhhhcchhccCCc
Confidence 455677777777777777777888888888866433 333333445667777777766 1223455666
Q ss_pred CcEEEeecCCCCC-----cccccCcCCCcEEEeeC
Q 016966 163 LRTLSLCSCGLPD-----ISFVGYLKKLEILCLRG 192 (379)
Q Consensus 163 L~~L~l~~~~l~~-----~~~~~~l~~L~~L~l~~ 192 (379)
|++|.+-+|.++. .--+.++++|++||..+
T Consensus 115 L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 115 LEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 6666666666544 23455566666666554
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=6.7e-06 Score=70.34 Aligned_cols=98 Identities=21% Similarity=0.127 Sum_probs=74.8
Q ss_pred CCceeEEEecCCC--CCccccCCCCCcEEEeecCCCCCcccccCcCCCcEEEeeCCcCcccch--hhcCCCCCCEEeccC
Q 016966 140 MIEVRVVNLTDMI--LPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPV--EVGELTWLKLLDLRD 215 (379)
Q Consensus 140 l~~L~~L~l~~~~--lp~~i~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~ 215 (379)
+.+.+.|++-+|. ...-..+|+.|++|.|+-|+|+....+..+++|+.|.|+.|.|..+-+ .+.++|+|+.|.+..
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 5567778888887 222346788899999999998888888888999999999888876653 677888888888888
Q ss_pred CCCCcccCh----hhhCCCCCCcEEE
Q 016966 216 CCFLKVIPP----NILSKLSHLEELY 237 (379)
Q Consensus 216 ~~~~~~~~~----~~l~~l~~L~~L~ 237 (379)
|...+.-+. .++.-||+|++|+
T Consensus 98 NPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 98 NPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CCcccccchhHHHHHHHHcccchhcc
Confidence 777666553 2356678888875
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=1.2e-05 Score=68.86 Aligned_cols=96 Identities=22% Similarity=0.197 Sum_probs=71.9
Q ss_pred CCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC--CCccccCCCCCcEEEeecCCCCC---cccccC
Q 016966 107 ECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI--LPSSLGLLSNLRTLSLCSCGLPD---ISFVGY 181 (379)
Q Consensus 107 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--lp~~i~~l~~L~~L~l~~~~l~~---~~~~~~ 181 (379)
.+.+.+.|++-|+.+++. ++..+|+.|++|.|+-|. ....+..+++|+.|+|..|.|.+ +..+.+
T Consensus 17 dl~~vkKLNcwg~~L~DI----------sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLkn 86 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI----------SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKN 86 (388)
T ss_pred HHHHhhhhcccCCCccHH----------HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhc
Confidence 355667777777555442 567789999999999988 44567888899999999999887 577888
Q ss_pred cCCCcEEEeeCCcCc--ccc----hhhcCCCCCCEEe
Q 016966 182 LKKLEILCLRGSDIV--KLP----VEVGELTWLKLLD 212 (379)
Q Consensus 182 l~~L~~L~l~~~~l~--~lp----~~~~~l~~L~~L~ 212 (379)
+++|++|.|..|.-. .-+ ..+..+|+|+.|+
T Consensus 87 lpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 87 LPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 999999999887322 222 2466788888886
No 63
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.30 E-value=1.7e-05 Score=71.56 Aligned_cols=263 Identities=16% Similarity=0.128 Sum_probs=152.8
Q ss_pred CccCCccEEEEeCCCC-C--CCCCCC-CCCCccEEEeecCCCCCCCCCCCcc-cChhhhhCCCceeEEEecCCC-CC---
Q 016966 84 STIKHFTSIVLHGIKP-N--LLPEVL-ECPQLELLFIRGGGRDDPWETSPVT-IPDNFFKSMIEVRVVNLTDMI-LP--- 154 (379)
Q Consensus 84 ~~~~~l~~L~l~~~~~-~--~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~-lp--- 154 (379)
...+++.+|.+.+|.. + ..-.+. .+++++.+.+..+. . ++. ....+-..+++|++|+++.|. +.
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~---~----iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~g 233 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCS---S----ITDVSLKYLAEGCRKLKYLNLSWCPQISGNG 233 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccc---h----hHHHHHHHHHHhhhhHHHhhhccCchhhcCc
Confidence 4678999999988863 1 111233 78999999988832 1 222 222344678999999999998 21
Q ss_pred --ccccCCCCCcEEEeecCCCCCcccc----cCcCCCcEEEeeCC-cCc--ccchhhcCCCCCCEEeccCCCCCcccChh
Q 016966 155 --SSLGLLSNLRTLSLCSCGLPDISFV----GYLKKLEILCLRGS-DIV--KLPVEVGELTWLKLLDLRDCCFLKVIPPN 225 (379)
Q Consensus 155 --~~i~~l~~L~~L~l~~~~l~~~~~~----~~l~~L~~L~l~~~-~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~ 225 (379)
........++.+.+.+|.-.+.+.+ +.+.-+..+++..| .++ .+...-..+..|+.|..++|......+..
T Consensus 234 v~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~ 313 (483)
T KOG4341|consen 234 VQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLW 313 (483)
T ss_pred chHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHH
Confidence 2334455677776677652222222 22334556666666 333 22222345677888888887765554432
Q ss_pred hh-CCCCCCcEEEecCCCCcChhhhhhcccccchHhh-cCCCCCcEEEeeccCCC-C--CC-ccccccCCcEEEEEeecc
Q 016966 226 IL-SKLSHLEELYIGRESFVDWEEEVEGVKNASLEEL-KHLPNLTSLEVHVRDVS-S--LP-RGLLLEKLERYSIYIRRY 299 (379)
Q Consensus 226 ~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~-~--~~-~~~~~~~L~~L~l~~~~~ 299 (379)
.+ .+.++|+.|.+.+|...+.. -...+ .+++.|+.+++..+... . +. ...+++.|+.++++++..
T Consensus 314 aLg~~~~~L~~l~l~~c~~fsd~---------~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~ 384 (483)
T KOG4341|consen 314 ALGQHCHNLQVLELSGCQQFSDR---------GFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCEL 384 (483)
T ss_pred HHhcCCCceEEEeccccchhhhh---------hhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhh
Confidence 22 45578888888887643211 13333 35577888888755433 1 11 122678888888764432
Q ss_pred cccC----cc----cccceEEEEeCCcccchHHHHHH---hcccceeeccccccccccccccccccccCCCCcEEE
Q 016966 300 FSRK----TG----IWCRQFRVELNNKICLKDSLIVQ---LQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLR 364 (379)
Q Consensus 300 ~~~~----~~----~~~~~~~L~l~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~ 364 (379)
-... .. .......+.++++..+++...+. .+.|+.+++..|. .+..-+..-+...+|+++...
T Consensus 385 itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q--~vtk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 385 ITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ--DVTKEAISRFATHLPNIKVHA 458 (483)
T ss_pred hhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh--hhhhhhhHHHHhhCccceehh
Confidence 2111 00 01111255666666666554322 4789999999998 666555544455678777653
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.21 E-value=0.00012 Score=62.25 Aligned_cols=82 Identities=28% Similarity=0.322 Sum_probs=40.9
Q ss_pred CCCcEEEeecCCCCCcccccCcCCCcEEEeeCC--cCc-ccchhhcCCCCCCEEeccCCCC--CcccChhhhCCCCCCcE
Q 016966 161 SNLRTLSLCSCGLPDISFVGYLKKLEILCLRGS--DIV-KLPVEVGELTWLKLLDLRDCCF--LKVIPPNILSKLSHLEE 235 (379)
Q Consensus 161 ~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~--~l~-~lp~~~~~l~~L~~L~l~~~~~--~~~~~~~~l~~l~~L~~ 235 (379)
..|++|++.++.++....+-.|++|++|.++.| .+. .++....++|+|++|++++|+. +..++. +..+.+|..
T Consensus 43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~nL~~ 120 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKELENLKS 120 (260)
T ss_pred cchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhhcchhh
Confidence 344445455554444444445556666666655 322 4444444556666666665542 122222 345555555
Q ss_pred EEecCCCCc
Q 016966 236 LYIGRESFV 244 (379)
Q Consensus 236 L~l~~~~~~ 244 (379)
|++..|..+
T Consensus 121 Ldl~n~~~~ 129 (260)
T KOG2739|consen 121 LDLFNCSVT 129 (260)
T ss_pred hhcccCCcc
Confidence 655555443
No 65
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.12 E-value=4.2e-05 Score=58.63 Aligned_cols=104 Identities=18% Similarity=0.231 Sum_probs=60.6
Q ss_pred ccEEEEeCCCCCCCCC----CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCC
Q 016966 89 FTSIVLHGIKPNLLPE----VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLS 161 (379)
Q Consensus 89 l~~L~l~~~~~~~~~~----~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~ 161 (379)
...++++.|.+-.++. .+....|+...+++|.+ ..+|+.+-..++.+..|++.+|. +|..+..++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~f--------k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~ 100 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGF--------KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMP 100 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchh--------hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhH
Confidence 3445666665533332 23445566666777543 33455554455566666666666 666666666
Q ss_pred CCcEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccch
Q 016966 162 NLRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPV 200 (379)
Q Consensus 162 ~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~ 200 (379)
.|+.|+++.|.+.. |..+..|.+|-.|+..++.+.++|.
T Consensus 101 aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~ 140 (177)
T KOG4579|consen 101 ALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDV 140 (177)
T ss_pred HhhhcccccCccccchHHHHHHHhHHHhcCCCCccccCcH
Confidence 66666666666555 5555556666666666665555554
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.12 E-value=0.00011 Score=70.86 Aligned_cols=162 Identities=24% Similarity=0.339 Sum_probs=87.7
Q ss_pred CCCCccEEEeecCCCCCCCCCCCccc-ChhhhhCCCceeEEEecCC-C--------CCccccCCCCCcEEEeecCC-CCC
Q 016966 107 ECPQLELLFIRGGGRDDPWETSPVTI-PDNFFKSMIEVRVVNLTDM-I--------LPSSLGLLSNLRTLSLCSCG-LPD 175 (379)
Q Consensus 107 ~~~~L~~L~l~~n~~~~~~~~~~~~~-~~~~~~~l~~L~~L~l~~~-~--------lp~~i~~l~~L~~L~l~~~~-l~~ 175 (379)
.++.|+.+.+.++.. .... -..+...+++|+.|+++++ . .......+.+|+.|+++.+. +++
T Consensus 186 ~~~~L~~l~l~~~~~-------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd 258 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSK-------ITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTD 258 (482)
T ss_pred hCchhhHhhhccccc-------CChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCc
Confidence 356777777666211 1111 1234456778888888762 1 12233445777888888777 555
Q ss_pred --cccccC-cCCCcEEEeeCCc-Cc--ccchhhcCCCCCCEEeccCCCCCcc--cChhhhCCCCCCcEEEecCCC----C
Q 016966 176 --ISFVGY-LKKLEILCLRGSD-IV--KLPVEVGELTWLKLLDLRDCCFLKV--IPPNILSKLSHLEELYIGRES----F 243 (379)
Q Consensus 176 --~~~~~~-l~~L~~L~l~~~~-l~--~lp~~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l~~~~----~ 243 (379)
...+.. +++|++|.+.+|. ++ .+-.....++.|++|+++.|..... +... ..++++|+.|.+.... +
T Consensus 259 ~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~-~~~c~~l~~l~~~~~~~c~~l 337 (482)
T KOG1947|consen 259 IGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL-LKNCPNLRELKLLSLNGCPSL 337 (482)
T ss_pred hhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH-HHhCcchhhhhhhhcCCCccH
Confidence 444443 6788888877774 44 4444455677788888887765422 2222 3445666665444332 1
Q ss_pred cChhhhhhc--c---cccchHhhcCCCCCcEEEeeccCCC
Q 016966 244 VDWEEEVEG--V---KNASLEELKHLPNLTSLEVHVRDVS 278 (379)
Q Consensus 244 ~~~~~~~~~--~---~~~~~~~l~~l~~L~~L~l~~~~~~ 278 (379)
.... ..+ . ..........+++++.+.+..+...
T Consensus 338 ~~~~--l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~ 375 (482)
T KOG1947|consen 338 TDLS--LSGLLTLTSDDLAELILRSCPKLTDLSLSYCGIS 375 (482)
T ss_pred HHHH--HHHhhccCchhHhHHHHhcCCCcchhhhhhhhcc
Confidence 1111 000 1 1222334556677777777665533
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.06 E-value=0.00028 Score=60.09 Aligned_cols=103 Identities=26% Similarity=0.285 Sum_probs=73.6
Q ss_pred CcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCC--CCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccch
Q 016966 181 YLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDC--CFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASL 258 (379)
Q Consensus 181 ~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~--~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 258 (379)
....|+.|.+.++.++.+. .+..|++|+.|.++.| .....++.. ...+|+|++|.+++|.+.... ..
T Consensus 41 ~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~ls---------tl 109 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKDLS---------TL 109 (260)
T ss_pred cccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCcccccc---------cc
Confidence 4456777777777766554 4568899999999998 444555544 456699999999999998654 56
Q ss_pred HhhcCCCCCcEEEeeccCCCCCCcc---c--cccCCcEEEE
Q 016966 259 EELKHLPNLTSLEVHVRDVSSLPRG---L--LLEKLERYSI 294 (379)
Q Consensus 259 ~~l~~l~~L~~L~l~~~~~~~~~~~---~--~~~~L~~L~l 294 (379)
..+..+.+|..|++..|..+.+-.. + .+++|+.|+-
T Consensus 110 ~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 110 RPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred chhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 6677788899999987766643322 1 3677776654
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.53 E-value=0.015 Score=44.98 Aligned_cols=102 Identities=17% Similarity=0.227 Sum_probs=43.9
Q ss_pred ChhhhhCCCceeEEEecCCC---CCccccCCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCcccch-hhcCCC
Q 016966 133 PDNFFKSMIEVRVVNLTDMI---LPSSLGLLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIVKLPV-EVGELT 206 (379)
Q Consensus 133 ~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~ 206 (379)
+...|.++.+|+.+.+...- -...+..+.+|+.+.+..+ +.. -..+..+++|+.+.+.. .+..++. .+..++
T Consensus 4 ~~~~F~~~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPNTIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp -TTTTTT-TT--EEEETST--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred CHHHHhCCCCCCEEEECCCeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 34456666666666665432 2233455556666666553 443 24455555666666644 3444443 334466
Q ss_pred CCCEEeccCCCCCcccChhhhCCCCCCcEEEec
Q 016966 207 WLKLLDLRDCCFLKVIPPNILSKLSHLEELYIG 239 (379)
Q Consensus 207 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 239 (379)
+|+.+.+..+ ...++...+.+. +|+.+.+.
T Consensus 82 ~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 82 NLKNIDIPSN--ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TECEEEETTT---BEEHTTTTTT--T--EEE-T
T ss_pred cccccccCcc--ccEEchhhhcCC-CceEEEEC
Confidence 6666666442 334444445554 66666554
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.96 E-value=0.0035 Score=31.96 Aligned_cols=21 Identities=29% Similarity=0.570 Sum_probs=13.5
Q ss_pred CCcEEEeeCCcCcccchhhcC
Q 016966 184 KLEILCLRGSDIVKLPVEVGE 204 (379)
Q Consensus 184 ~L~~L~l~~~~l~~lp~~~~~ 204 (379)
+|++|++++|+++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 466777777777666665443
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.64 E-value=0.0025 Score=61.53 Aligned_cols=126 Identities=26% Similarity=0.277 Sum_probs=67.4
Q ss_pred CCCCcEEEeecCC-CCC--c-ccccCcCCCcEEEeeCC--cCcc----cchhhcCCCCCCEEeccCCCCCcccChhhh-C
Q 016966 160 LSNLRTLSLCSCG-LPD--I-SFVGYLKKLEILCLRGS--DIVK----LPVEVGELTWLKLLDLRDCCFLKVIPPNIL-S 228 (379)
Q Consensus 160 l~~L~~L~l~~~~-l~~--~-~~~~~l~~L~~L~l~~~--~l~~----lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l-~ 228 (379)
.+.|+.|.+.++. +.. . +....+++|+.|+++++ .... .......+.+|++|+++.+....+.....+ .
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 5666777776664 443 2 44455677777777662 1111 112334556777777777664333322222 2
Q ss_pred CCCCCcEEEecCCC-CcChhhhhhcccccchHhhcCCCCCcEEEeeccCCC-C--CCccc-cccCCcEEEE
Q 016966 229 KLSHLEELYIGRES-FVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVS-S--LPRGL-LLEKLERYSI 294 (379)
Q Consensus 229 ~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~--~~~~~-~~~~L~~L~l 294 (379)
.+++|++|.+.+|. +++.. +......++.|++|+++++... . +.... .+++|+.+.+
T Consensus 267 ~c~~L~~L~l~~c~~lt~~g---------l~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEG---------LVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred hCCCcceEccCCCCccchhH---------HHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 36777777766565 34332 4444556677777777755443 1 11111 4566666544
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.11 E-value=0.1 Score=40.21 Aligned_cols=84 Identities=12% Similarity=0.187 Sum_probs=33.7
Q ss_pred CcccChhhhhCCCceeEEEecCCC---CCccccCCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCcccch-hh
Q 016966 129 PVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIVKLPV-EV 202 (379)
Q Consensus 129 ~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~-~~ 202 (379)
...+....|..+..|+.+.+..+- ....+..+..|+.+.+.. .+.. ...+..+++|+.+.+..+ +..++. .+
T Consensus 23 ~~~I~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f 100 (129)
T PF13306_consen 23 IKKIGENAFSNCTSLKSINFPNNLTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSF 100 (129)
T ss_dssp --EE-TTTTTT-TT-SEEEESSTTSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTT
T ss_pred eeEeChhhcccccccccccccccccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhh
Confidence 334455555555556666555433 112344444556665543 2222 234445566666666443 444443 23
Q ss_pred cCCCCCCEEeccC
Q 016966 203 GELTWLKLLDLRD 215 (379)
Q Consensus 203 ~~l~~L~~L~l~~ 215 (379)
.+. +|+.+.+..
T Consensus 101 ~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 101 SNC-NLKEINIPS 112 (129)
T ss_dssp TT--T--EEE-TT
T ss_pred cCC-CceEEEECC
Confidence 444 666665543
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.86 E-value=0.019 Score=27.16 Aligned_cols=16 Identities=31% Similarity=0.515 Sum_probs=7.1
Q ss_pred CCcEEEeeCCcCcccc
Q 016966 184 KLEILCLRGSDIVKLP 199 (379)
Q Consensus 184 ~L~~L~l~~~~l~~lp 199 (379)
+|++|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4566666666655544
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.47 E-value=0.035 Score=45.84 Aligned_cols=74 Identities=28% Similarity=0.337 Sum_probs=43.1
Q ss_pred ceeEEEecCCC----CCccccCCCCCcEEEeecCC-CCC--cccccCc-CCCcEEEeeCC-cCccc-chhhcCCCCCCEE
Q 016966 142 EVRVVNLTDMI----LPSSLGLLSNLRTLSLCSCG-LPD--ISFVGYL-KKLEILCLRGS-DIVKL-PVEVGELTWLKLL 211 (379)
Q Consensus 142 ~L~~L~l~~~~----lp~~i~~l~~L~~L~l~~~~-l~~--~~~~~~l-~~L~~L~l~~~-~l~~l-p~~~~~l~~L~~L 211 (379)
.++.++.+++. --+.+..+..++.|.+.+|. +.+ ...++.+ ++|+.|++++| +|++- -..+.++++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 35667776665 23345566666677777776 443 4445443 56777777766 55522 2255666666666
Q ss_pred eccC
Q 016966 212 DLRD 215 (379)
Q Consensus 212 ~l~~ 215 (379)
++.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 6655
No 74
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.15 E-value=0.2 Score=26.45 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=13.9
Q ss_pred cCCCcEEEeeCCcCcccchhh
Q 016966 182 LKKLEILCLRGSDIVKLPVEV 202 (379)
Q Consensus 182 l~~L~~L~l~~~~l~~lp~~~ 202 (379)
+++|++|++++|.++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356777777777777776543
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.15 E-value=0.2 Score=26.45 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=13.9
Q ss_pred cCCCcEEEeeCCcCcccchhh
Q 016966 182 LKKLEILCLRGSDIVKLPVEV 202 (379)
Q Consensus 182 l~~L~~L~l~~~~l~~lp~~~ 202 (379)
+++|++|++++|.++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356777777777777776543
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.01 E-value=0.054 Score=44.74 Aligned_cols=78 Identities=19% Similarity=0.151 Sum_probs=43.3
Q ss_pred CCcEEEeecCCCCC--cccccCcCCCcEEEeeCC-cCc--ccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEE
Q 016966 162 NLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGS-DIV--KLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEEL 236 (379)
Q Consensus 162 ~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~-~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L 236 (379)
.++.++-+++.|.. ...+..++.++.|.+.+| .+. .+..--+-.++|+.|++++|..+.+.....+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 35556666665544 566666666666666666 332 1111111345666666666666555554445666666666
Q ss_pred Eec
Q 016966 237 YIG 239 (379)
Q Consensus 237 ~l~ 239 (379)
.+.
T Consensus 182 ~l~ 184 (221)
T KOG3864|consen 182 HLY 184 (221)
T ss_pred Hhc
Confidence 555
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=88.89 E-value=0.0054 Score=58.66 Aligned_cols=180 Identities=20% Similarity=0.147 Sum_probs=106.0
Q ss_pred ccEEEEeCCCCCCCC------CCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCC-CceeEEEecCCC--------C
Q 016966 89 FTSIVLHGIKPNLLP------EVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSM-IEVRVVNLTDMI--------L 153 (379)
Q Consensus 89 l~~L~l~~~~~~~~~------~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~--------l 153 (379)
+.++++.+|.+..-. .....+.|..|++.+|.+.+. ........+... +.+++|.+..|. +
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~----g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l 164 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDE----GARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPL 164 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccH----hHHHHHhhcccchHHHHHHHhhcccccccchHHH
Confidence 777888888773222 133667788888888776542 111111112222 456667777666 4
Q ss_pred CccccCCCCCcEEEeecCCCCC------ccccc----CcCCCcEEEeeCCcCc-----ccchhhcCCCC-CCEEeccCCC
Q 016966 154 PSSLGLLSNLRTLSLCSCGLPD------ISFVG----YLKKLEILCLRGSDIV-----KLPVEVGELTW-LKLLDLRDCC 217 (379)
Q Consensus 154 p~~i~~l~~L~~L~l~~~~l~~------~~~~~----~l~~L~~L~l~~~~l~-----~lp~~~~~l~~-L~~L~l~~~~ 217 (379)
.+.+....+++.++++.|.+.. +..+. ...++++|++.+|.++ .+-..+...+. ++.+++..|.
T Consensus 165 ~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~ 244 (478)
T KOG4308|consen 165 AAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK 244 (478)
T ss_pred HHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC
Confidence 4455567778888888887532 23333 3667888888888766 11223444455 6667777765
Q ss_pred CCcccChhh---hCCC-CCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCC
Q 016966 218 FLKVIPPNI---LSKL-SHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVS 278 (379)
Q Consensus 218 ~~~~~~~~~---l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 278 (379)
......... +..+ +.++++++..|++.... ...+...+..+++++.+.+..|.+.
T Consensus 245 l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~------~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 245 LGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKG------VRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred cchHHHHHHHHHhcccchhhhhhhhhcCCccccc------hHHHHHHHhhhHHHHHhhcccCccc
Confidence 443311111 3444 56788888888876543 2234555666677888888777654
No 78
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=85.81 E-value=0.59 Score=24.68 Aligned_cols=16 Identities=25% Similarity=0.382 Sum_probs=12.2
Q ss_pred CCCCcEEEecCCCCcc
Q 016966 357 SSHLKRLRLEGSDLAL 372 (379)
Q Consensus 357 ~~~L~~L~l~~c~~l~ 372 (379)
+|+|++|+|++|+.++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 4778888888887664
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.65 E-value=0.018 Score=48.63 Aligned_cols=75 Identities=13% Similarity=0.067 Sum_probs=33.1
Q ss_pred CceeEEEecCCC---CCccccCCCCCcEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccC
Q 016966 141 IEVRVVNLTDMI---LPSSLGLLSNLRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRD 215 (379)
Q Consensus 141 ~~L~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~ 215 (379)
+...+||++.+. +-..++-+..|..|+++.+.+.. |.+.+.+..+..+++..|..+..|.+.+..+.+++++.-.
T Consensus 42 kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~ 120 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKK 120 (326)
T ss_pred ceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhcc
Confidence 344444444444 33333333444444444444444 4444444444444444444444444444444444444433
No 80
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=84.97 E-value=0.01 Score=56.78 Aligned_cols=178 Identities=21% Similarity=0.208 Sum_probs=114.4
Q ss_pred ccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC--------CCccccCC-CCCcEEEeecCCCCC------
Q 016966 111 LELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI--------LPSSLGLL-SNLRTLSLCSCGLPD------ 175 (379)
Q Consensus 111 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--------lp~~i~~l-~~L~~L~l~~~~l~~------ 175 (379)
+..|.+.+|.+.+. ....-...+.....|..|++++|. +-..+... ..+++|++..|.+..
T Consensus 89 l~~L~L~~~~l~~~----~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l 164 (478)
T KOG4308|consen 89 LLHLSLANNRLGDR----GAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPL 164 (478)
T ss_pred HHHhhhhhCccccc----hHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHH
Confidence 77788888776553 222333445678889999999988 22233333 567888888888765
Q ss_pred cccccCcCCCcEEEeeCCcCc-----ccchhhc----CCCCCCEEeccCCCCCcccCh---hhhCCCCC-CcEEEecCCC
Q 016966 176 ISFVGYLKKLEILCLRGSDIV-----KLPVEVG----ELTWLKLLDLRDCCFLKVIPP---NILSKLSH-LEELYIGRES 242 (379)
Q Consensus 176 ~~~~~~l~~L~~L~l~~~~l~-----~lp~~~~----~l~~L~~L~l~~~~~~~~~~~---~~l~~l~~-L~~L~l~~~~ 242 (379)
...+.+...++.++++.|.+. .++..+. ...++++|.+++|..+...-. ..+...+. +..|++..|.
T Consensus 165 ~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~ 244 (478)
T KOG4308|consen 165 AAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK 244 (478)
T ss_pred HHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC
Confidence 256667788999999999664 2233333 477899999988765432211 12445555 6668888777
Q ss_pred CcChhhhhhcccccchHhhcCC-CCCcEEEeeccCCCCCCc-c----c-cccCCcEEEEEeec
Q 016966 243 FVDWEEEVEGVKNASLEELKHL-PNLTSLEVHVRDVSSLPR-G----L-LLEKLERYSIYIRR 298 (379)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~-~----~-~~~~L~~L~l~~~~ 298 (379)
+.+.. .....+.+..+ ..++.+++..|.+..... . + .++.++.+.+..+.
T Consensus 245 l~d~g------~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 245 LGDVG------VEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP 301 (478)
T ss_pred cchHH------HHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCc
Confidence 76532 22344555556 678999999888773222 1 1 46778888775443
No 81
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=81.49 E-value=0.91 Score=24.03 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=14.5
Q ss_pred CCCcEEEeeCCcCcccch
Q 016966 183 KKLEILCLRGSDIVKLPV 200 (379)
Q Consensus 183 ~~L~~L~l~~~~l~~lp~ 200 (379)
++|+.|++++|+++.+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 468888888888888885
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=77.04 E-value=0.063 Score=45.40 Aligned_cols=87 Identities=17% Similarity=0.094 Sum_probs=74.0
Q ss_pred cccCCCCCcEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCc
Q 016966 156 SLGLLSNLRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLE 234 (379)
Q Consensus 156 ~i~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 234 (379)
.+......+.||++.+.+.. -..++.++.|..|+++.+.+..+|..++....+++++... +.....|.+ .+..+.++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s-~~k~~~~k 114 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHSQQPKS-QKKEPHPK 114 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc-cchhhCCcc-ccccCCcc
Confidence 45667888999999998777 5778888999999999999999999999999999998776 446778877 69999999
Q ss_pred EEEecCCCCc
Q 016966 235 ELYIGRESFV 244 (379)
Q Consensus 235 ~L~l~~~~~~ 244 (379)
.++..++.+.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 9999888765
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=71.26 E-value=2.1 Score=21.93 Aligned_cols=14 Identities=36% Similarity=0.430 Sum_probs=6.1
Q ss_pred CCCcEEEeeCCcCc
Q 016966 183 KKLEILCLRGSDIV 196 (379)
Q Consensus 183 ~~L~~L~l~~~~l~ 196 (379)
++|++|++++|.++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34555555555443
No 84
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=69.57 E-value=3.8 Score=21.70 Aligned_cols=16 Identities=38% Similarity=0.399 Sum_probs=9.6
Q ss_pred CCCcEEEeeCCcCccc
Q 016966 183 KKLEILCLRGSDIVKL 198 (379)
Q Consensus 183 ~~L~~L~l~~~~l~~l 198 (379)
++|+.|++++|.|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4566666666665443
No 85
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=49.23 E-value=12 Score=20.04 Aligned_cols=13 Identities=38% Similarity=0.475 Sum_probs=7.2
Q ss_pred CCcEEEeecCCCC
Q 016966 162 NLRTLSLCSCGLP 174 (379)
Q Consensus 162 ~L~~L~l~~~~l~ 174 (379)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555554
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=45.51 E-value=11 Score=36.39 Aligned_cols=62 Identities=24% Similarity=0.184 Sum_probs=27.5
Q ss_pred CCCcEEEeeCCcCc---ccchhhcCCCCCCEEeccCCCCCcccChhhhCCC--CCCcEEEecCCCCcC
Q 016966 183 KKLEILCLRGSDIV---KLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKL--SHLEELYIGRESFVD 245 (379)
Q Consensus 183 ~~L~~L~l~~~~l~---~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~ 245 (379)
+.+..+++++|++. .+..-....|+|+.|+|++|........+ +.++ ..|+.|.+.||++..
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~e-l~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESE-LDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhh-hhhhcCCCHHHeeecCCcccc
Confidence 44555555555443 22222334556666666664211111111 2222 235566666666543
No 87
>PF14162 YozD: YozD-like protein
Probab=36.79 E-value=36 Score=21.24 Aligned_cols=11 Identities=9% Similarity=0.084 Sum_probs=5.7
Q ss_pred HHHHHHHhccc
Q 016966 25 LVRTLKASCML 35 (379)
Q Consensus 25 ~~~~L~~~~l~ 35 (379)
++.+|+.||++
T Consensus 17 Fy~eL~kRGyv 27 (57)
T PF14162_consen 17 FYHELVKRGYV 27 (57)
T ss_pred HHHHHHHccCC
Confidence 44455555555
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=36.49 E-value=29 Score=33.67 Aligned_cols=12 Identities=25% Similarity=0.249 Sum_probs=6.4
Q ss_pred cccceeeccccc
Q 016966 330 QRIEDLELSELQ 341 (379)
Q Consensus 330 ~~L~~L~l~~~~ 341 (379)
..|+.|.+.+|+
T Consensus 270 l~Leel~l~GNP 281 (585)
T KOG3763|consen 270 LPLEELVLEGNP 281 (585)
T ss_pred CCHHHeeecCCc
Confidence 345555555555
No 89
>COG3432 Predicted transcriptional regulator [Transcription]
Probab=31.00 E-value=1.6e+02 Score=21.34 Aligned_cols=38 Identities=5% Similarity=0.297 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhccceeccccccCeEeechhHHHHHH
Q 016966 20 NRVHALVRTLKASCMLLDHESEKEELFSMHDVVRHVAI 57 (379)
Q Consensus 20 ~~~~~~~~~L~~~~l~~~~~~~~~~~~~~hdl~~d~~~ 57 (379)
..+.+|++.|++++++.....++.+.|.+-+--.++..
T Consensus 46 ~~~~~yi~~L~~~Gli~~~~~~~~~~y~lT~KG~~fle 83 (95)
T COG3432 46 KRAQKYIEMLVEKGLIIKQDNGRRKVYELTEKGKRFLE 83 (95)
T ss_pred HHHHHHHHHHHhCCCEEeccCCccceEEEChhHHHHHH
Confidence 45666888899999887766655667888877776643
Done!