Query 016966
Match_columns 379
No_of_seqs 228 out of 3088
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 06:44:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016966.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016966hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fmz_A Internalin; leucine ric 99.9 5.6E-23 1.9E-27 188.6 22.3 264 83-370 62-345 (347)
2 4fmz_A Internalin; leucine ric 99.9 2.1E-22 7.2E-27 184.8 23.8 234 81-341 82-344 (347)
3 3v47_A TOLL-like receptor 5B a 99.9 2.6E-23 8.8E-28 197.9 18.2 285 76-375 21-412 (455)
4 1ogq_A PGIP-2, polygalacturona 99.9 3.3E-24 1.1E-28 193.9 11.1 244 87-374 50-307 (313)
5 2z80_A TOLL-like receptor 2, v 99.9 3E-23 1E-27 190.8 17.3 261 90-374 34-317 (353)
6 4fcg_A Uncharacterized protein 99.9 2.5E-23 8.7E-28 189.2 13.9 221 107-372 79-315 (328)
7 2id5_A Lingo-1, leucine rich r 99.9 1.9E-22 6.4E-27 193.1 20.3 272 85-370 30-332 (477)
8 3o6n_A APL1; leucine-rich repe 99.9 2.9E-22 9.8E-27 186.9 20.7 267 85-371 43-352 (390)
9 3rgz_A Protein brassinosteroid 99.9 4.6E-23 1.6E-27 208.4 16.0 266 88-377 369-723 (768)
10 4eco_A Uncharacterized protein 99.9 1.3E-23 4.5E-28 207.8 11.6 256 102-374 198-504 (636)
11 4eco_A Uncharacterized protein 99.9 6.7E-23 2.3E-27 202.7 15.5 275 85-376 247-584 (636)
12 3rgz_A Protein brassinosteroid 99.9 1.2E-22 4E-27 205.4 17.0 276 84-376 315-698 (768)
13 4fcg_A Uncharacterized protein 99.9 1.5E-22 5.1E-27 184.1 15.8 216 86-341 80-312 (328)
14 4ecn_A Leucine-rich repeat pro 99.9 8.6E-23 3E-27 206.3 15.4 255 102-374 440-744 (876)
15 2id5_A Lingo-1, leucine rich r 99.9 2.1E-21 7.3E-26 185.8 23.8 189 90-298 14-211 (477)
16 3vq2_A TLR4, TOLL-like recepto 99.9 1.5E-21 5.1E-26 192.4 22.9 137 76-221 22-168 (606)
17 3t6q_A CD180 antigen; protein- 99.9 9.5E-22 3.3E-26 193.8 19.5 212 77-298 24-312 (606)
18 3zyi_A Leucine-rich repeat-con 99.9 7.7E-22 2.6E-26 187.5 18.2 238 89-370 56-302 (452)
19 3oja_B Anopheles plasmodium-re 99.9 1E-21 3.6E-26 193.0 19.6 254 86-371 50-358 (597)
20 4ecn_A Leucine-rich repeat pro 99.9 4E-22 1.4E-26 201.5 16.4 278 85-376 489-824 (876)
21 3o6n_A APL1; leucine-rich repe 99.9 1E-21 3.5E-26 183.1 17.9 254 106-374 42-334 (390)
22 1o6v_A Internalin A; bacterial 99.9 4.1E-21 1.4E-25 183.3 22.5 270 83-375 86-392 (466)
23 3zyj_A Leucine-rich repeat-con 99.9 1.7E-21 5.9E-26 184.5 19.7 238 89-370 45-291 (440)
24 1o6v_A Internalin A; bacterial 99.9 3.4E-21 1.2E-25 183.8 21.6 270 81-373 62-346 (466)
25 2z7x_B TOLL-like receptor 1, v 99.9 1.7E-21 5.9E-26 188.4 19.8 155 203-371 321-481 (520)
26 1ogq_A PGIP-2, polygalacturona 99.9 2.7E-22 9.4E-27 181.3 13.0 226 109-376 50-286 (313)
27 1xku_A Decorin; proteoglycan, 99.9 2.8E-21 9.7E-26 176.0 19.7 256 88-372 32-307 (330)
28 2z81_A CD282 antigen, TOLL-lik 99.9 1.4E-21 4.9E-26 190.3 18.4 144 86-238 25-179 (549)
29 3v47_A TOLL-like receptor 5B a 99.9 1.3E-21 4.4E-26 186.1 17.5 239 83-341 50-406 (455)
30 2z66_A Variable lymphocyte rec 99.9 6.7E-22 2.3E-26 178.2 14.7 192 86-294 27-230 (306)
31 2z63_A TOLL-like receptor 4, v 99.9 1.1E-21 3.7E-26 191.9 16.8 283 76-375 18-413 (570)
32 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.2E-21 1.1E-25 188.3 19.0 155 203-371 350-510 (562)
33 3t6q_A CD180 antigen; protein- 99.9 3.1E-21 1.1E-25 190.2 19.0 262 88-375 255-540 (606)
34 3vq2_A TLR4, TOLL-like recepto 99.9 1.6E-21 5.5E-26 192.2 16.6 263 83-372 281-559 (606)
35 2ft3_A Biglycan; proteoglycan, 99.9 2.1E-21 7.3E-26 177.0 16.1 254 88-371 34-307 (332)
36 3oja_B Anopheles plasmodium-re 99.9 2.2E-21 7.4E-26 190.7 17.1 254 106-374 48-340 (597)
37 1xku_A Decorin; proteoglycan, 99.9 7.5E-21 2.6E-25 173.2 19.4 257 85-369 50-330 (330)
38 1ozn_A Reticulon 4 receptor; N 99.9 7.5E-21 2.6E-25 169.5 17.1 203 76-298 22-236 (285)
39 3j0a_A TOLL-like receptor 5; m 99.9 1.1E-20 3.7E-25 193.0 19.3 284 76-374 15-378 (844)
40 3bz5_A Internalin-J, INLJ; leu 99.9 9.9E-21 3.4E-25 179.7 17.4 262 85-373 40-333 (457)
41 2z81_A CD282 antigen, TOLL-lik 99.9 1.1E-20 3.8E-25 184.0 17.8 180 92-280 10-211 (549)
42 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 3E-20 1E-24 181.4 19.3 110 77-197 43-160 (562)
43 2z7x_B TOLL-like receptor 1, v 99.8 4.6E-20 1.6E-24 178.4 19.4 127 87-225 21-159 (520)
44 2z66_A Variable lymphocyte rec 99.8 3.5E-20 1.2E-24 166.9 15.3 233 90-341 10-259 (306)
45 2ft3_A Biglycan; proteoglycan, 99.8 3.4E-20 1.2E-24 169.0 15.3 239 109-377 33-283 (332)
46 2z63_A TOLL-like receptor 4, v 99.8 9.8E-20 3.4E-24 178.0 18.9 270 83-376 48-439 (570)
47 3j0a_A TOLL-like receptor 5; m 99.8 4.7E-20 1.6E-24 188.2 17.0 271 90-376 7-356 (844)
48 3o53_A Protein LRIM1, AGAP0063 99.8 2.3E-20 7.7E-25 169.0 11.2 184 86-294 33-221 (317)
49 1ziw_A TOLL-like receptor 3; i 99.8 1.1E-19 3.9E-24 181.4 17.2 261 85-370 23-308 (680)
50 1ozn_A Reticulon 4 receptor; N 99.8 3.5E-19 1.2E-23 158.7 18.5 191 90-300 14-214 (285)
51 1ziw_A TOLL-like receptor 3; i 99.8 1.9E-19 6.4E-24 179.8 18.4 195 84-295 293-512 (680)
52 3oja_A Leucine-rich immune mol 99.8 3E-20 1E-24 177.9 11.7 232 85-366 32-270 (487)
53 3bz5_A Internalin-J, INLJ; leu 99.8 4.5E-19 1.5E-23 168.3 19.4 249 83-373 60-354 (457)
54 2z80_A TOLL-like receptor 2, v 99.8 8.1E-20 2.8E-24 167.9 13.3 245 76-341 42-312 (353)
55 1wwl_A Monocyte differentiatio 99.8 4.7E-21 1.6E-25 173.1 4.6 243 86-372 42-310 (312)
56 3zyj_A Leucine-rich repeat-con 99.8 2.3E-19 8E-24 169.8 15.6 202 76-299 54-267 (440)
57 3g06_A SSPH2 (leucine-rich rep 99.8 8.1E-19 2.8E-23 171.7 19.2 234 86-373 60-299 (622)
58 1h6u_A Internalin H; cell adhe 99.8 9.5E-19 3.3E-23 157.6 17.9 191 84-300 38-230 (308)
59 3zyi_A Leucine-rich repeat-con 99.8 6.8E-19 2.3E-23 167.2 17.5 223 111-377 56-285 (452)
60 3o53_A Protein LRIM1, AGAP0063 99.8 8.8E-21 3E-25 171.7 3.0 215 107-371 32-250 (317)
61 1p9a_G Platelet glycoprotein I 99.8 1.9E-18 6.6E-23 154.1 17.3 194 84-298 7-206 (290)
62 1p9a_G Platelet glycoprotein I 99.8 1.9E-18 6.4E-23 154.2 16.9 195 105-341 6-206 (290)
63 2z62_A TOLL-like receptor 4, v 99.8 2.7E-18 9.2E-23 152.2 17.5 170 109-294 28-207 (276)
64 2o6q_A Variable lymphocyte rec 99.8 4.7E-18 1.6E-22 150.2 18.6 191 88-298 17-216 (270)
65 2xwt_C Thyrotropin receptor; s 99.8 2.8E-18 9.7E-23 148.7 16.7 196 77-294 23-233 (239)
66 3oja_A Leucine-rich immune mol 99.8 9.8E-20 3.3E-24 174.3 7.6 215 107-371 32-250 (487)
67 1jl5_A Outer protein YOPM; leu 99.8 1.2E-17 4.1E-22 158.4 21.3 199 137-372 149-371 (454)
68 2o6q_A Variable lymphocyte rec 99.8 1E-17 3.4E-22 148.0 19.3 175 85-278 35-218 (270)
69 2z62_A TOLL-like receptor 4, v 99.8 2.3E-18 7.8E-23 152.7 14.8 195 85-299 26-236 (276)
70 2xwt_C Thyrotropin receptor; s 99.8 4.5E-18 1.5E-22 147.5 15.8 203 98-370 22-238 (239)
71 1jl5_A Outer protein YOPM; leu 99.8 2.5E-17 8.5E-22 156.2 21.3 252 87-372 131-410 (454)
72 3rfs_A Internalin B, repeat mo 99.8 8.7E-18 3E-22 148.6 16.7 175 83-278 37-218 (272)
73 3rfs_A Internalin B, repeat mo 99.8 8.5E-19 2.9E-23 155.1 10.0 218 86-352 18-242 (272)
74 1wwl_A Monocyte differentiatio 99.8 8.2E-19 2.8E-23 158.4 9.8 215 89-341 65-307 (312)
75 4g8a_A TOLL-like receptor 4; l 99.8 1.3E-17 4.6E-22 164.8 16.9 139 76-223 42-190 (635)
76 1h6u_A Internalin H; cell adhe 99.8 3.8E-17 1.3E-21 147.1 18.0 179 78-283 54-235 (308)
77 1h6t_A Internalin B; cell adhe 99.7 1.7E-17 5.7E-22 148.2 15.2 173 84-282 43-217 (291)
78 3m19_A Variable lymphocyte rec 99.7 5.2E-17 1.8E-21 141.8 17.5 172 88-279 15-193 (251)
79 4g8a_A TOLL-like receptor 4; l 99.7 8.1E-17 2.8E-21 159.1 18.8 108 83-198 72-188 (635)
80 4glp_A Monocyte differentiatio 99.7 1.1E-17 3.7E-22 150.9 10.9 225 107-372 62-308 (310)
81 4glp_A Monocyte differentiatio 99.7 1.3E-17 4.5E-22 150.3 10.5 192 87-296 91-303 (310)
82 2ca6_A RAN GTPase-activating p 99.7 2.8E-18 9.6E-23 159.6 4.7 233 85-341 30-314 (386)
83 2ca6_A RAN GTPase-activating p 99.7 1.9E-18 6.6E-23 160.7 3.4 240 107-374 30-319 (386)
84 4ay9_X Follicle-stimulating ho 99.7 1.8E-16 6E-21 145.4 16.1 189 86-294 29-230 (350)
85 1m9s_A Internalin B; cell inva 99.7 7.4E-17 2.5E-21 157.6 13.8 173 84-282 40-214 (605)
86 1z7x_W Ribonuclease inhibitor; 99.7 9.6E-19 3.3E-23 166.5 0.4 270 88-371 86-411 (461)
87 1h6t_A Internalin B; cell adhe 99.7 1.6E-16 5.5E-21 141.8 14.7 185 89-300 26-213 (291)
88 3g06_A SSPH2 (leucine-rich rep 99.7 9E-16 3.1E-20 150.2 20.5 210 85-341 79-295 (622)
89 2ast_B S-phase kinase-associat 99.7 2.8E-17 9.6E-22 149.8 7.3 244 87-376 47-311 (336)
90 2ast_B S-phase kinase-associat 99.7 6.5E-17 2.2E-21 147.4 8.5 191 87-295 70-280 (336)
91 4ezg_A Putative uncharacterize 99.7 6.1E-16 2.1E-20 129.8 13.6 147 84-244 41-194 (197)
92 1z7x_W Ribonuclease inhibitor; 99.7 7E-18 2.4E-22 160.5 1.8 269 85-371 26-354 (461)
93 3m19_A Variable lymphocyte rec 99.7 2.6E-15 8.8E-20 131.0 17.2 153 85-246 33-194 (251)
94 1m9s_A Internalin B; cell inva 99.7 1.8E-16 6.2E-21 154.9 10.4 187 87-300 21-210 (605)
95 4ezg_A Putative uncharacterize 99.7 1.1E-15 3.7E-20 128.3 13.4 148 107-278 42-194 (197)
96 3ogk_B Coronatine-insensitive 99.6 2.3E-16 7.8E-21 154.9 8.8 81 85-169 162-251 (592)
97 2o6s_A Variable lymphocyte rec 99.6 2.5E-15 8.6E-20 127.2 13.5 168 90-284 10-185 (208)
98 3cvr_A Invasion plasmid antige 99.6 1.7E-15 5.8E-20 146.5 11.6 134 110-282 60-197 (571)
99 1xeu_A Internalin C; cellular 99.6 4.7E-16 1.6E-20 136.6 7.0 170 85-282 17-189 (263)
100 3e6j_A Variable lymphocyte rec 99.6 1.2E-14 4.3E-19 124.8 15.7 149 87-245 19-173 (229)
101 3goz_A Leucine-rich repeat-con 99.6 1.2E-16 4.2E-21 147.2 2.9 199 86-298 21-264 (362)
102 2v70_A SLIT-2, SLIT homolog 2 99.6 1.1E-14 3.7E-19 124.4 14.8 147 90-245 14-167 (220)
103 2v9t_B SLIT homolog 2 protein 99.6 1.7E-14 5.8E-19 123.1 14.6 146 90-245 14-166 (220)
104 3cvr_A Invasion plasmid antige 99.6 2E-14 6.8E-19 139.1 16.6 173 88-299 60-242 (571)
105 3ogk_B Coronatine-insensitive 99.6 1.1E-15 3.8E-20 149.9 7.6 265 85-372 190-527 (592)
106 3goz_A Leucine-rich repeat-con 99.6 3.6E-16 1.2E-20 144.0 3.0 234 92-341 3-295 (362)
107 2o6s_A Variable lymphocyte rec 99.6 9.8E-15 3.3E-19 123.5 11.6 147 84-246 25-180 (208)
108 4ay9_X Follicle-stimulating ho 99.6 3.4E-14 1.2E-18 130.2 15.8 192 83-295 50-254 (350)
109 2xot_A Amphoterin-induced prot 99.6 1.5E-14 5.2E-19 133.0 13.5 169 90-278 21-202 (361)
110 1xeu_A Internalin C; cellular 99.6 1.1E-14 3.7E-19 127.9 11.7 148 83-246 37-187 (263)
111 2v9t_B SLIT homolog 2 protein 99.6 3.9E-14 1.3E-18 120.9 13.5 136 129-278 23-165 (220)
112 2v70_A SLIT-2, SLIT homolog 2 99.5 6.8E-14 2.3E-18 119.4 13.3 145 112-278 14-166 (220)
113 2ell_A Acidic leucine-rich nuc 99.5 4.3E-14 1.5E-18 115.3 11.3 134 141-282 24-164 (168)
114 2p1m_B Transport inhibitor res 99.5 4.1E-15 1.4E-19 145.9 6.1 39 329-370 480-518 (594)
115 3e6j_A Variable lymphocyte rec 99.5 8.8E-14 3E-18 119.5 13.6 126 141-278 40-172 (229)
116 2xot_A Amphoterin-induced prot 99.5 7.4E-14 2.5E-18 128.4 11.9 159 77-245 30-203 (361)
117 4b8c_D Glucose-repressible alc 99.5 1.4E-14 4.8E-19 144.9 5.4 159 85-249 171-334 (727)
118 2ell_A Acidic leucine-rich nuc 99.5 2.2E-13 7.4E-18 111.1 9.4 131 158-299 21-159 (168)
119 2p1m_B Transport inhibitor res 99.4 3.5E-14 1.2E-18 139.3 3.8 105 261-370 428-543 (594)
120 2je0_A Acidic leucine-rich nuc 99.4 2.3E-13 7.7E-18 108.6 7.7 58 158-215 39-97 (149)
121 2je0_A Acidic leucine-rich nuc 99.4 1.5E-13 5.1E-18 109.7 6.2 125 159-294 15-147 (149)
122 1a9n_A U2A', U2A'; complex (nu 99.4 8.8E-13 3E-17 108.3 8.6 82 162-244 43-126 (176)
123 1w8a_A SLIT protein; signaling 99.4 2.5E-12 8.4E-17 107.2 11.3 102 142-244 30-139 (192)
124 1w8a_A SLIT protein; signaling 99.4 3.1E-12 1E-16 106.6 11.8 125 90-223 11-143 (192)
125 1a9n_A U2A', U2A'; complex (nu 99.4 1.3E-12 4.5E-17 107.3 8.8 132 156-298 14-151 (176)
126 2wfh_A SLIT homolog 2 protein 99.3 8.5E-12 2.9E-16 104.0 12.4 103 141-244 31-139 (193)
127 2o6r_A Variable lymphocyte rec 99.3 1.8E-11 6.3E-16 100.4 12.7 88 157-245 48-138 (177)
128 4b8c_D Glucose-repressible alc 99.3 2.6E-12 9E-17 128.5 7.9 150 108-279 172-330 (727)
129 1dce_A Protein (RAB geranylger 99.3 9.1E-12 3.1E-16 120.9 11.4 120 162-293 442-566 (567)
130 2wfh_A SLIT homolog 2 protein 99.3 1.5E-11 5.2E-16 102.5 11.1 122 144-278 13-139 (193)
131 1dce_A Protein (RAB geranylger 99.3 9.2E-12 3.1E-16 120.9 11.1 121 142-272 442-567 (567)
132 2o6r_A Variable lymphocyte rec 99.3 5.6E-11 1.9E-15 97.5 12.7 123 143-278 9-137 (177)
133 1ds9_A Outer arm dynein; leuci 99.2 3.9E-14 1.3E-18 118.8 -7.5 107 136-245 43-154 (198)
134 1ds9_A Outer arm dynein; leuci 99.2 5.6E-13 1.9E-17 111.7 -1.2 81 137-217 66-151 (198)
135 3sb4_A Hypothetical leucine ri 99.2 3.4E-11 1.2E-15 109.1 8.5 99 182-293 225-327 (329)
136 2r9u_A Variable lymphocyte rec 99.1 5.8E-10 2E-14 91.1 10.7 98 144-244 15-118 (174)
137 3g39_A Variable lymphocyte rec 99.1 6E-10 2E-14 90.7 10.6 100 143-245 11-116 (170)
138 2r9u_A Variable lymphocyte rec 99.1 8.3E-10 2.8E-14 90.2 11.1 107 163-282 14-122 (174)
139 3g39_A Variable lymphocyte rec 99.1 1E-09 3.4E-14 89.4 10.9 106 163-281 11-118 (170)
140 3un9_A NLR family member X1; l 99.0 6.7E-11 2.3E-15 108.8 2.1 111 161-278 126-252 (372)
141 4fdw_A Leucine rich hypothetic 99.0 2E-08 6.7E-13 93.3 17.6 203 131-375 148-362 (401)
142 3un9_A NLR family member X1; l 98.9 1.7E-10 5.9E-15 106.0 -0.8 156 85-247 70-255 (372)
143 3sb4_A Hypothetical leucine ri 98.9 1.1E-08 3.9E-13 92.4 11.0 165 86-272 100-328 (329)
144 2ra8_A Uncharacterized protein 98.8 9.8E-09 3.4E-13 93.7 9.6 239 14-278 45-320 (362)
145 4fdw_A Leucine rich hypothetic 98.8 1.2E-07 4.1E-12 87.9 16.7 182 88-295 158-353 (401)
146 2ifg_A High affinity nerve gro 98.7 3.8E-08 1.3E-12 89.6 10.1 99 145-246 12-118 (347)
147 2ifg_A High affinity nerve gro 98.7 5.1E-08 1.7E-12 88.7 9.7 90 129-220 21-117 (347)
148 2ra8_A Uncharacterized protein 98.5 6.7E-07 2.3E-11 81.5 10.5 82 156-239 134-227 (362)
149 2a5y_B CED-4; apoptosis; HET: 98.3 4.4E-08 1.5E-12 94.8 -0.9 61 1-65 408-473 (549)
150 3e4g_A ATP synthase subunit S, 98.3 7.3E-07 2.5E-11 71.9 5.8 75 142-217 62-150 (176)
151 1io0_A Tropomodulin; LRR prote 98.3 5.6E-07 1.9E-11 74.0 4.5 78 136-213 31-128 (185)
152 1io0_A Tropomodulin; LRR prote 98.2 6.7E-07 2.3E-11 73.5 4.2 117 155-278 30-164 (185)
153 3e4g_A ATP synthase subunit S, 98.1 6E-06 2.1E-10 66.5 6.6 90 153-242 53-150 (176)
154 4fs7_A Uncharacterized protein 98.0 4.9E-05 1.7E-09 70.2 12.8 32 330-366 343-374 (394)
155 3rw6_A Nuclear RNA export fact 98.0 1.8E-06 6.1E-11 74.8 2.1 38 160-197 169-210 (267)
156 3rw6_A Nuclear RNA export fact 97.8 1.7E-05 5.6E-10 68.8 4.7 76 137-212 166-257 (267)
157 4fs7_A Uncharacterized protein 97.7 0.00019 6.5E-09 66.2 11.5 57 105-170 158-217 (394)
158 4gt6_A Cell surface protein; l 97.7 0.0012 4.2E-08 60.7 16.6 121 88-215 65-191 (394)
159 4gt6_A Cell surface protein; l 97.5 0.0028 9.5E-08 58.3 15.3 79 83-170 83-169 (394)
160 4h09_A Hypothetical leucine ri 96.5 0.034 1.2E-06 50.6 13.0 126 133-272 209-340 (379)
161 4h09_A Hypothetical leucine ri 96.2 0.12 3.9E-06 47.0 14.7 100 181-294 215-317 (379)
162 1pgv_A TMD-1, tropomodulin TMD 95.9 0.0099 3.4E-07 48.6 5.3 59 138-196 38-111 (197)
163 1pgv_A TMD-1, tropomodulin TMD 95.7 0.011 3.8E-07 48.3 4.7 117 157-276 37-168 (197)
164 3rfe_A Platelet glycoprotein I 94.6 0.058 2E-06 40.8 5.7 55 187-244 12-68 (130)
165 3sfz_A APAF-1, apoptotic pepti 94.2 0.033 1.1E-06 58.9 4.6 44 20-63 409-452 (1249)
166 3rfe_A Platelet glycoprotein I 94.2 0.084 2.9E-06 40.0 5.6 52 165-218 12-67 (130)
167 1vt4_I APAF-1 related killer D 89.8 0.17 5.9E-06 51.8 3.2 34 22-57 404-437 (1221)
168 1z6t_A APAF-1, apoptotic prote 86.3 0.65 2.2E-05 44.8 4.8 40 21-60 410-449 (591)
169 2lz0_A Uncharacterized protein 32.6 51 0.0017 23.0 3.9 22 129-150 8-29 (100)
170 2lz0_A Uncharacterized protein 26.8 85 0.0029 21.8 4.3 39 105-152 16-54 (100)
No 1
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=5.6e-23 Score=188.58 Aligned_cols=264 Identities=19% Similarity=0.175 Sum_probs=126.6
Q ss_pred CCccCCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccC
Q 016966 83 GSTIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGL 159 (379)
Q Consensus 83 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~ 159 (379)
...++++++|++++|.+..++.+..+++|++|++++|.+.+ ++ .|..+++|++|++++|. ++. +..
T Consensus 62 ~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~--------~~--~~~~l~~L~~L~l~~n~i~~~~~-~~~ 130 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD--------IS--ALQNLTNLRELYLNEDNISDISP-LAN 130 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--------CG--GGTTCTTCSEEECTTSCCCCCGG-GTT
T ss_pred hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccC--------ch--HHcCCCcCCEEECcCCcccCchh-hcc
Confidence 44556666666666666555555566666666666654322 22 24556666666666665 332 555
Q ss_pred CCCCcEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEe
Q 016966 160 LSNLRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYI 238 (379)
Q Consensus 160 l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 238 (379)
+++|++|++++|.... ++.+..+++|++|++++|.+..++. +..+++|++|++++|.. ..++. +..+++|+.|++
T Consensus 131 l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l-~~~~~--~~~l~~L~~L~l 206 (347)
T 4fmz_A 131 LTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQI-EDISP--LASLTSLHYFTA 206 (347)
T ss_dssp CTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCC-CCCGG--GGGCTTCCEEEC
T ss_pred CCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcc-ccccc--ccCCCccceeec
Confidence 6666666666654333 4445555556666665555555443 55555555555555432 22222 344444444444
Q ss_pred cCCCCcChhhhhhc------------ccccchHhhcCCCCCcEEEeeccCCCCCCccccccCCcEEEEEeeccccc-Ccc
Q 016966 239 GRESFVDWEEEVEG------------VKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYFSR-KTG 305 (379)
Q Consensus 239 ~~~~~~~~~~~~~~------------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~ 305 (379)
.+|.+....+ ... .....+ .+..+++|+.|++++|.+..++....+++|+.|+++.+..... ...
T Consensus 207 ~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 284 (347)
T 4fmz_A 207 YVNQITDITP-VANMTRLNSLKIGNNKITDLS-PLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLN 284 (347)
T ss_dssp CSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGG
T ss_pred ccCCCCCCch-hhcCCcCCEEEccCCccCCCc-chhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCChhhc
Confidence 4444433210 000 000011 1455555555555555555443322455555555543332211 112
Q ss_pred cccceEEEEe-CCccc--chHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCC
Q 016966 306 IWCRQFRVEL-NNKIC--LKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDL 370 (379)
Q Consensus 306 ~~~~~~~L~l-~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 370 (379)
.+++...|.+ ++... .+..+.. +++|+.|++++|+ ++.++. + ..+++|++|++++|++
T Consensus 285 ~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~L~~n~---l~~~~~-~--~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 285 NLSQLNSLFLNNNQLGNEDMEVIGG-LTNLTTLFLSQNH---ITDIRP-L--ASLSKMDSADFANQVI 345 (347)
T ss_dssp GCTTCSEEECCSSCCCGGGHHHHHT-CTTCSEEECCSSS---CCCCGG-G--GGCTTCSEESSSCC--
T ss_pred CCCCCCEEECcCCcCCCcChhHhhc-cccCCEEEccCCc---cccccC-h--hhhhccceeehhhhcc
Confidence 2233335555 22221 2333334 2556666666665 444333 1 2356666666666554
No 2
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=2.1e-22 Score=184.76 Aligned_cols=234 Identities=20% Similarity=0.252 Sum_probs=157.6
Q ss_pred CCCCccCCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccc
Q 016966 81 SDGSTIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSL 157 (379)
Q Consensus 81 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i 157 (379)
+....++++++|++++|.+..++.+..+++|++|++++|.+.+ ++. +..+++|++|++++|. .+..+
T Consensus 82 ~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~--------~~~--~~~l~~L~~L~l~~n~~~~~~~~~ 151 (347)
T 4fmz_A 82 SPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISD--------ISP--LANLTKMYSLNLGANHNLSDLSPL 151 (347)
T ss_dssp GGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCC--------CGG--GTTCTTCCEEECTTCTTCCCCGGG
T ss_pred hhhhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccC--------chh--hccCCceeEEECCCCCCcccccch
Confidence 3356778899999999988888777789999999999876543 232 5667777777777774 33346
Q ss_pred cCCCCCcEEEeecCCCCCcccccCcCCCcEEEeeCCcCcccch---------------------hhcCCCCCCEEeccCC
Q 016966 158 GLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPV---------------------EVGELTWLKLLDLRDC 216 (379)
Q Consensus 158 ~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~---------------------~~~~l~~L~~L~l~~~ 216 (379)
..+++|++|++++|.+.....+..+++|++|++++|.+..++. .+..+++|++|++++|
T Consensus 152 ~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n 231 (347)
T 4fmz_A 152 SNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNN 231 (347)
T ss_dssp TTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSS
T ss_pred hhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCC
Confidence 6666667776666666553335566666666666666555543 1444555555555554
Q ss_pred CCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccccccCCcEEEEEe
Q 016966 217 CFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYI 296 (379)
Q Consensus 217 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~ 296 (379)
... .++. +..+++|++|++++|.+.. .+.+..+++|+.|++++|.+..++....+++|+.|+++.
T Consensus 232 ~l~-~~~~--~~~l~~L~~L~l~~n~l~~------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~ 296 (347)
T 4fmz_A 232 KIT-DLSP--LANLSQLTWLEIGTNQISD------------INAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNN 296 (347)
T ss_dssp CCC-CCGG--GTTCTTCCEEECCSSCCCC------------CGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCS
T ss_pred ccC-CCcc--hhcCCCCCEEECCCCccCC------------ChhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcC
Confidence 432 2222 4566666666666665554 356888999999999999999886544789999999976
Q ss_pred ecccccC---cccccceEEEEe-CCccc-chHHHHHHhcccceeeccccc
Q 016966 297 RRYFSRK---TGIWCRQFRVEL-NNKIC-LKDSLIVQLQRIEDLELSELQ 341 (379)
Q Consensus 297 ~~~~~~~---~~~~~~~~~L~l-~~~~~-~~~~~~~~~~~L~~L~l~~~~ 341 (379)
+...... +..+++...|++ ++... .++ +.. +++|++|++++|.
T Consensus 297 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~-l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 297 NQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LAS-LSKMDSADFANQV 344 (347)
T ss_dssp SCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGG-CTTCSEESSSCC-
T ss_pred CcCCCcChhHhhccccCCEEEccCCccccccC-hhh-hhccceeehhhhc
Confidence 6543222 234566668999 44444 444 556 5999999999997
No 3
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=2.6e-23 Score=197.87 Aligned_cols=285 Identities=18% Similarity=0.185 Sum_probs=190.3
Q ss_pred cCcCCCCCCccCCccEEEEeCCCCCCCC--CCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC-
Q 016966 76 GCREWSDGSTIKHFTSIVLHGIKPNLLP--EVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI- 152 (379)
Q Consensus 76 ~~~~~~~~~~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~- 152 (379)
++...+. ..+++++|++++|.+..++ .+..+++|+.|++++|.+ ...+++..|.++++|++|++++|.
T Consensus 21 ~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~-------~~~i~~~~~~~l~~L~~L~Ls~n~l 91 (455)
T 3v47_A 21 GLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTP-------GLVIRNNTFRGLSSLIILKLDYNQF 91 (455)
T ss_dssp CCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCST-------TCEECTTTTTTCTTCCEEECTTCTT
T ss_pred CcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcc-------cceECcccccccccCCEEeCCCCcc
Confidence 4445554 4588999999999996653 355899999999999765 446777778999999999999998
Q ss_pred ---CCccccCCCCCcEEEeecCCCCC--ccc--ccCcCCCcEEEeeCCcCccc-chh-hcCCCCCCEEeccCCCCCcccC
Q 016966 153 ---LPSSLGLLSNLRTLSLCSCGLPD--ISF--VGYLKKLEILCLRGSDIVKL-PVE-VGELTWLKLLDLRDCCFLKVIP 223 (379)
Q Consensus 153 ---lp~~i~~l~~L~~L~l~~~~l~~--~~~--~~~l~~L~~L~l~~~~l~~l-p~~-~~~l~~L~~L~l~~~~~~~~~~ 223 (379)
.|..++.+++|++|++++|.+.. +.. +..+++|++|++++|.+..+ |.. +..+++|++|++++|......+
T Consensus 92 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 171 (455)
T 3v47_A 92 LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE 171 (455)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT
T ss_pred CccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh
Confidence 57889999999999999999987 444 88999999999999999977 444 7899999999999987655544
Q ss_pred hhhhC----------------------------------CCCCCcEEEecCCCCcChhhhhhcc----------------
Q 016966 224 PNILS----------------------------------KLSHLEELYIGRESFVDWEEEVEGV---------------- 253 (379)
Q Consensus 224 ~~~l~----------------------------------~l~~L~~L~l~~~~~~~~~~~~~~~---------------- 253 (379)
.. +. .+++|++|++++|.+.+..+.....
T Consensus 172 ~~-l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 250 (455)
T 3v47_A 172 ED-LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY 250 (455)
T ss_dssp TT-SGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCT
T ss_pred hh-hhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccc
Confidence 32 22 3367888888888765432111100
Q ss_pred -------------------------------------cccchHhhcCCCCCcEEEeeccCCCCCCc-cc-cccCCcEEEE
Q 016966 254 -------------------------------------KNASLEELKHLPNLTSLEVHVRDVSSLPR-GL-LLEKLERYSI 294 (379)
Q Consensus 254 -------------------------------------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~-~~~~L~~L~l 294 (379)
....+..++.+++|+.|++++|.+..++. .+ .+++|+.|++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 330 (455)
T 3v47_A 251 NMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNL 330 (455)
T ss_dssp TTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEEC
Confidence 00123345566666666666666664432 33 4566666666
Q ss_pred Eeeccccc---CcccccceEEEEe-CCccc-c-hHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCC
Q 016966 295 YIRRYFSR---KTGIWCRQFRVEL-NNKIC-L-KDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGS 368 (379)
Q Consensus 295 ~~~~~~~~---~~~~~~~~~~L~l-~~~~~-~-~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c 368 (379)
+.+..... .+..+++...|++ .+... . |..+..+ ++|++|++++|. ++.++...+ ..+++|++|++++|
T Consensus 331 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~N~---l~~~~~~~~-~~l~~L~~L~l~~N 405 (455)
T 3v47_A 331 SQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL-PNLKELALDTNQ---LKSVPDGIF-DRLTSLQKIWLHTN 405 (455)
T ss_dssp CSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTC-TTCCEEECCSSC---CSCCCTTTT-TTCTTCCEEECCSS
T ss_pred CCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccc-ccccEEECCCCc---cccCCHhHh-ccCCcccEEEccCC
Confidence 54433211 1223344446666 32222 2 4444453 677777777765 555554432 24667777777777
Q ss_pred CCccCCC
Q 016966 369 DLALNPA 375 (379)
Q Consensus 369 ~~l~~~~ 375 (379)
+..-..|
T Consensus 406 ~l~~~~~ 412 (455)
T 3v47_A 406 PWDCSCP 412 (455)
T ss_dssp CBCCCTT
T ss_pred CcccCCC
Confidence 6665544
No 4
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.90 E-value=3.3e-24 Score=193.89 Aligned_cols=244 Identities=16% Similarity=0.205 Sum_probs=189.3
Q ss_pred CCccEEEEeCCCCC---CCCC-CCCCCCccEEEeec-CCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccc
Q 016966 87 KHFTSIVLHGIKPN---LLPE-VLECPQLELLFIRG-GGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSL 157 (379)
Q Consensus 87 ~~l~~L~l~~~~~~---~~~~-~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i 157 (379)
.++++|+++++.+. .+|. +..+++|+.|++++ |.+ ...+|.. |.++++|++|++++|. .|..+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l-------~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~ 121 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL-------VGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFL 121 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTE-------ESCCCGG-GGGCTTCSEEEEEEECCEEECCGGG
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcc-------cccCChh-HhcCCCCCEEECcCCeeCCcCCHHH
Confidence 57889999998885 4665 44888999999984 554 3345554 5788999999998887 77888
Q ss_pred cCCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCc-ccchhhcCCC-CCCEEeccCCCCCcccChhhhCCCCCC
Q 016966 158 GLLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIV-KLPVEVGELT-WLKLLDLRDCCFLKVIPPNILSKLSHL 233 (379)
Q Consensus 158 ~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~-~L~~L~l~~~~~~~~~~~~~l~~l~~L 233 (379)
..+++|++|++++|.+.. |..+..+++|++|++++|.++ .+|..++.++ +|++|++++|...+..|.. ++.++ |
T Consensus 122 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L 199 (313)
T 1ogq_A 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-L 199 (313)
T ss_dssp GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-C
T ss_pred hCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-c
Confidence 889999999999998874 778888999999999999888 7888888887 8999999988777677776 67776 9
Q ss_pred cEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccc-cccCCcEEEEEeecccccCcccccceEE
Q 016966 234 EELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGL-LLEKLERYSIYIRRYFSRKTGIWCRQFR 312 (379)
Q Consensus 234 ~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 312 (379)
+.|++++|.+.+. .+..++.+++|+.|++++|.++..+..+ .+++|+.|+++.+...
T Consensus 200 ~~L~Ls~N~l~~~----------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~------------ 257 (313)
T 1ogq_A 200 AFVDLSRNMLEGD----------ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY------------ 257 (313)
T ss_dssp SEEECCSSEEEEC----------CGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCE------------
T ss_pred cEEECcCCcccCc----------CCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCccc------------
Confidence 9999998887653 3677788889999999988887443334 6788888888544332
Q ss_pred EEeCCcccchHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCCccCC
Q 016966 313 VELNNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLALNP 374 (379)
Q Consensus 313 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 374 (379)
..+|.++.. +++|++|++++|. ....+|.. ..+++|+.|++.+|+.+.-+
T Consensus 258 ------~~~p~~l~~-l~~L~~L~Ls~N~--l~~~ip~~---~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 258 ------GTLPQGLTQ-LKFLHSLNVSFNN--LCGEIPQG---GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp ------ECCCGGGGG-CTTCCEEECCSSE--EEEECCCS---TTGGGSCGGGTCSSSEEEST
T ss_pred ------CcCChHHhc-CcCCCEEECcCCc--ccccCCCC---ccccccChHHhcCCCCccCC
Confidence 135555666 4999999999998 44466664 35899999999999966543
No 5
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.90 E-value=3e-23 Score=190.85 Aligned_cols=261 Identities=18% Similarity=0.135 Sum_probs=170.6
Q ss_pred cEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccccCCCCCcE
Q 016966 90 TSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGLLSNLRT 165 (379)
Q Consensus 90 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~l~~L~~ 165 (379)
...+.+++.+..+|... .++|+.|++++|.+ ..++...|.++++|++|++++|. .|..+..+++|++
T Consensus 34 ~~c~~~~~~l~~iP~~~-~~~L~~L~l~~n~i--------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 34 GICKGSSGSLNSIPSGL-TEAVKSLDLSNNRI--------TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp SEEECCSTTCSSCCTTC-CTTCCEEECTTSCC--------CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred eEeeCCCCCcccccccc-cccCcEEECCCCcC--------cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 34566666666666522 24677777777543 34555456677777777777776 4455777777777
Q ss_pred EEeecCCCCC-ccc-ccCcCCCcEEEeeCCcCcccch--hhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCC
Q 016966 166 LSLCSCGLPD-ISF-VGYLKKLEILCLRGSDIVKLPV--EVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRE 241 (379)
Q Consensus 166 L~l~~~~l~~-~~~-~~~l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 241 (379)
|++++|.++. +.. ++.+++|++|++++|.++.+|. .+..+++|++|++++|.....++...++.+++|++|++++|
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 7777777776 433 6777777777777777777765 56677777777777765555555444677777777777777
Q ss_pred CCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccc--cccCCcEEEEEeecccccCccccc------ceEEE
Q 016966 242 SFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGL--LLEKLERYSIYIRRYFSRKTGIWC------RQFRV 313 (379)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~------~~~~L 313 (379)
.+.+. .+..++.+++|+.|++++|.+..++... .+++|+.|+++.+.........+. ....+
T Consensus 185 ~l~~~----------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l 254 (353)
T 2z80_A 185 DLQSY----------EPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKF 254 (353)
T ss_dssp TCCEE----------CTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEE
T ss_pred CcCcc----------CHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcc
Confidence 76653 2556667777777777777776666544 367777777765544322211111 11133
Q ss_pred Ee-C------CcccchHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCCccCC
Q 016966 314 EL-N------NKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLALNP 374 (379)
Q Consensus 314 ~l-~------~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 374 (379)
.+ . ....+|+++..+ ++|+.|++++|. ++.++..++ ..+++|++|++++|+....+
T Consensus 255 ~L~~~~l~~~~l~~l~~~l~~l-~~L~~L~Ls~N~---l~~i~~~~~-~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 255 TFRNVKITDESLFQVMKLLNQI-SGLLELEFSRNQ---LKSVPDGIF-DRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp EEESCBCCHHHHHHHHHHHHTC-TTCCEEECCSSC---CCCCCTTTT-TTCTTCCEEECCSSCBCCCH
T ss_pred ccccccccCcchhhhHHHHhcc-cCCCEEECCCCC---CCccCHHHH-hcCCCCCEEEeeCCCccCcC
Confidence 33 1 112356667774 999999999998 788887653 35899999999999876543
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=2.5e-23 Score=189.22 Aligned_cols=221 Identities=19% Similarity=0.218 Sum_probs=173.7
Q ss_pred CCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCCCCcEEEeecCCCCC-cccccCc
Q 016966 107 ECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLSNLRTLSLCSCGLPD-ISFVGYL 182 (379)
Q Consensus 107 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~l~~-~~~~~~l 182 (379)
..++++.|++.+|.+ ..+|+.+ .++++|++|++++|. +|..++.+++|++|++++|.+.. |..++++
T Consensus 79 ~~~~l~~L~L~~n~l--------~~lp~~l-~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l 149 (328)
T 4fcg_A 79 TQPGRVALELRSVPL--------PQFPDQA-FRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASL 149 (328)
T ss_dssp TSTTCCEEEEESSCC--------SSCCSCG-GGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGC
T ss_pred cccceeEEEccCCCc--------hhcChhh-hhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcC
Confidence 457889999999654 3566665 458899999999988 88888899999999999999888 7888899
Q ss_pred CCCcEEEeeCCc-CcccchhhcC---------CCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhc
Q 016966 183 KKLEILCLRGSD-IVKLPVEVGE---------LTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEG 252 (379)
Q Consensus 183 ~~L~~L~l~~~~-l~~lp~~~~~---------l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 252 (379)
++|++|++++|+ +..+|..+.. +++|++|++++|... .+|.. ++.+++|++|++++|.+..
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~-l~~l~~L~~L~L~~N~l~~------- 220 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPAS-IANLQNLKSLKIRNSPLSA------- 220 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGG-GGGCTTCCEEEEESSCCCC-------
T ss_pred cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHh-hcCCCCCCEEEccCCCCCc-------
Confidence 999999999874 4477766554 889999999987654 77776 7889999999999888876
Q ss_pred ccccchHhhcCCCCCcEEEeeccCCC-CCCccc-cccCCcEEEEEeecccccCcccccceEEEEeCCcccchHHHHHHhc
Q 016966 253 VKNASLEELKHLPNLTSLEVHVRDVS-SLPRGL-LLEKLERYSIYIRRYFSRKTGIWCRQFRVELNNKICLKDSLIVQLQ 330 (379)
Q Consensus 253 ~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~ 330 (379)
++..++.+++|+.|++++|.+. .+|..+ .+++|+.|+++.+... ..+|..+.. ++
T Consensus 221 ----l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~------------------~~~p~~~~~-l~ 277 (328)
T 4fcg_A 221 ----LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL------------------LTLPLDIHR-LT 277 (328)
T ss_dssp ----CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTC------------------CBCCTTGGG-CT
T ss_pred ----CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCch------------------hhcchhhhc-CC
Confidence 4557888889999999987766 666665 6788888888443332 234555655 49
Q ss_pred ccceeeccccccccccccccccccccCCCCcEEEecCCCCcc
Q 016966 331 RIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLAL 372 (379)
Q Consensus 331 ~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~ 372 (379)
+|++|++++|. .+..+|..+.. +++|+.+.+..+....
T Consensus 278 ~L~~L~L~~n~--~~~~iP~~l~~--L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 278 QLEKLDLRGCV--NLSRLPSLIAQ--LPANCIILVPPHLQAQ 315 (328)
T ss_dssp TCCEEECTTCT--TCCCCCGGGGG--SCTTCEEECCGGGSCC
T ss_pred CCCEEeCCCCC--chhhccHHHhh--ccCceEEeCCHHHHHH
Confidence 99999999999 88899988765 9999999888655443
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=1.9e-22 Score=193.13 Aligned_cols=272 Identities=18% Similarity=0.169 Sum_probs=144.8
Q ss_pred ccCCccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCc-ccc
Q 016966 85 TIKHFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPS-SLG 158 (379)
Q Consensus 85 ~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~-~i~ 158 (379)
..++++.|++++|.+..++. +..+++|+.|++++|.+ ..+++..|.++++|++|++++|. +|. .+.
T Consensus 30 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i--------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 101 (477)
T 2id5_A 30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV--------SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFT 101 (477)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC--------CEECTTTTTTCTTCCEEECCSSCCCSCCTTSST
T ss_pred CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCcc--------CEeChhhhhCCccCCEEECCCCcCCccCccccc
Confidence 34566777777776654432 34666777777766543 23333445666666666666665 332 355
Q ss_pred CCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCcccc-hhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcE
Q 016966 159 LLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIVKLP-VEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEE 235 (379)
Q Consensus 159 ~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 235 (379)
.+++|++|++++|.+.. +..+..+++|++|++++|.+..++ ..+..+++|++|++++|.. ..++...+..+++|+.
T Consensus 102 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~l~~l~~L~~ 180 (477)
T 2id5_A 102 GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL-TSIPTEALSHLHGLIV 180 (477)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC-SSCCHHHHTTCTTCCE
T ss_pred CCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC-cccChhHhcccCCCcE
Confidence 66666666666666655 345566666666666666665443 3455666666666666543 3344433566666666
Q ss_pred EEecCCCCcChhhhhhc--------------ccccchHhhcCCCCCcEEEeeccCCCCCCccc--cccCCcEEEEEeecc
Q 016966 236 LYIGRESFVDWEEEVEG--------------VKNASLEELKHLPNLTSLEVHVRDVSSLPRGL--LLEKLERYSIYIRRY 299 (379)
Q Consensus 236 L~l~~~~~~~~~~~~~~--------------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~ 299 (379)
|++.+|.+....+...+ .....+.......+|+.|++++|.++.+|... .+++|+.|+++.+..
T Consensus 181 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 260 (477)
T 2id5_A 181 LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260 (477)
T ss_dssp EEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCC
T ss_pred EeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcC
Confidence 66666655443200000 00001222222335566666666666555322 456666666644432
Q ss_pred cc---cCcccccceEEEEe-CCccc-c-hHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCC
Q 016966 300 FS---RKTGIWCRQFRVEL-NNKIC-L-KDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDL 370 (379)
Q Consensus 300 ~~---~~~~~~~~~~~L~l-~~~~~-~-~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 370 (379)
.. ..+..+++...|.+ ++... + +..+.. +++|+.|++++|. ++.++...+ ..+++|++|++++|+.
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~N~---l~~~~~~~~-~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 261 STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG-LNYLRVLNVSGNQ---LTTLEESVF-HSVGNLETLILDSNPL 332 (477)
T ss_dssp CEECTTSCTTCTTCCEEECCSSCCSEECTTTBTT-CTTCCEEECCSSC---CSCCCGGGB-SCGGGCCEEECCSSCE
T ss_pred CccChhhccccccCCEEECCCCccceECHHHhcC-cccCCEEECCCCc---CceeCHhHc-CCCcccCEEEccCCCc
Confidence 21 11223344446666 22222 2 333444 3677777777775 555555432 2366777777776664
No 8
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=2.9e-22 Score=186.88 Aligned_cols=267 Identities=17% Similarity=0.138 Sum_probs=163.4
Q ss_pred ccCCccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCcccc
Q 016966 85 TIKHFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLG 158 (379)
Q Consensus 85 ~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~ 158 (379)
.+++++++++.++.+..+|. +..+++|++|++++|.+ ..+++..|..+++|++|++++|. .|..++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i--------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 114 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI--------EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 114 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCC--------CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcc--------cccChhhccCCCCcCEEECCCCCCCcCCHHHhc
Confidence 34667777777777666665 23667777777777543 33444456677777777777776 344566
Q ss_pred CCCCCcEEEeecCCCCC-ccc-ccCcCCCcEEEeeCCcCcccch-hhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcE
Q 016966 159 LLSNLRTLSLCSCGLPD-ISF-VGYLKKLEILCLRGSDIVKLPV-EVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEE 235 (379)
Q Consensus 159 ~l~~L~~L~l~~~~l~~-~~~-~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 235 (379)
.+++|++|++++|.+.. |.. +..+++|++|++++|.+..++. .+..+++|++|++++|.... ++ ++.+++|+.
T Consensus 115 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~---~~~l~~L~~ 190 (390)
T 3o6n_A 115 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD---LSLIPSLFH 190 (390)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-CC---GGGCTTCSE
T ss_pred CCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-cc---cccccccce
Confidence 77777777777777766 433 4667777777777777765543 46677777777777755332 22 222333333
Q ss_pred EEecCC-------------------CCcChhhhhh---------cccccchHhhcCCCCCcEEEeeccCCCCC-Cccc-c
Q 016966 236 LYIGRE-------------------SFVDWEEEVE---------GVKNASLEELKHLPNLTSLEVHVRDVSSL-PRGL-L 285 (379)
Q Consensus 236 L~l~~~-------------------~~~~~~~~~~---------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~-~ 285 (379)
|++++| .+...+.... +..-.....+..+++|+.|++++|.+..+ |..+ .
T Consensus 191 L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (390)
T 3o6n_A 191 ANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVK 270 (390)
T ss_dssp EECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred eecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccc
Confidence 333322 2221110000 00000124567788888888888888754 4444 6
Q ss_pred ccCCcEEEEEeecccc--cCcccccceEEEEe--CCcccchHHHHHHhcccceeeccccccccccccccccccccCCCCc
Q 016966 286 LEKLERYSIYIRRYFS--RKTGIWCRQFRVEL--NNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLK 361 (379)
Q Consensus 286 ~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~l--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~ 361 (379)
+++|+.|+++.+.... .....+++...|++ +....+|..+..+ ++|+.|++++|. ++.++ ...+++|+
T Consensus 271 l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l-~~L~~L~L~~N~---i~~~~----~~~~~~L~ 342 (390)
T 3o6n_A 271 MQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQF-DRLENLYLDHNS---IVTLK----LSTHHTLK 342 (390)
T ss_dssp CSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHH-TTCSEEECCSSC---CCCCC----CCTTCCCS
T ss_pred cccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCcccccc-CcCCEEECCCCc---cceeC----chhhccCC
Confidence 7888888886554331 11234556668888 3344467777774 899999999987 66664 23488999
Q ss_pred EEEecCCCCc
Q 016966 362 RLRLEGSDLA 371 (379)
Q Consensus 362 ~L~l~~c~~l 371 (379)
+|++++|+..
T Consensus 343 ~L~l~~N~~~ 352 (390)
T 3o6n_A 343 NLTLSHNDWD 352 (390)
T ss_dssp EEECCSSCEE
T ss_pred EEEcCCCCcc
Confidence 9999988753
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=4.6e-23 Score=208.35 Aligned_cols=266 Identities=21% Similarity=0.229 Sum_probs=176.7
Q ss_pred CccEEEEeCCCC-CCCCC-CCC--CCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccccC
Q 016966 88 HFTSIVLHGIKP-NLLPE-VLE--CPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGL 159 (379)
Q Consensus 88 ~l~~L~l~~~~~-~~~~~-~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~ 159 (379)
+++.|++++|.+ ..++. ... +++|+.|.+.+|.+ ...+|. .|..+++|++|++++|. .|..++.
T Consensus 369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l-------~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~l~~ 440 (768)
T 3rgz_A 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF-------TGKIPP-TLSNCSELVSLHLSFNYLSGTIPSSLGS 440 (768)
T ss_dssp TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEE-------EEECCG-GGGGCTTCCEEECCSSEEESCCCGGGGG
T ss_pred CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcc-------ccccCH-HHhcCCCCCEEECcCCcccCcccHHHhc
Confidence 677777777766 22332 222 56777777777543 223343 34667777777777776 6666777
Q ss_pred CCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCc-ccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEE
Q 016966 160 LSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIV-KLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEEL 236 (379)
Q Consensus 160 l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L 236 (379)
+++|++|++++|.+.. |..+..+++|++|++++|.++ .+|..+..+++|++|++++|...+.+|.. ++.+++|+.|
T Consensus 441 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L 519 (768)
T 3rgz_A 441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAIL 519 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEE
T ss_pred CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChH-HhcCCCCCEE
Confidence 7777777777777664 566777777777777777666 56666777777777777777766666665 5777777777
Q ss_pred EecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCC-CCCccc-------------------------------
Q 016966 237 YIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVS-SLPRGL------------------------------- 284 (379)
Q Consensus 237 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~------------------------------- 284 (379)
++++|.+.+. .+..++.+++|+.|++++|.+. .+|..+
T Consensus 520 ~L~~N~l~~~----------~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (768)
T 3rgz_A 520 KLSNNSFSGN----------IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG 589 (768)
T ss_dssp ECCSSCCEEE----------CCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCS
T ss_pred ECCCCcccCc----------CCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccc
Confidence 7777766543 3566667777777777766554 343221
Q ss_pred ----------------------------------------cccCCcEEEEEeecccccC---cccccceEEEEe-CCcc-
Q 016966 285 ----------------------------------------LLEKLERYSIYIRRYFSRK---TGIWCRQFRVEL-NNKI- 319 (379)
Q Consensus 285 ----------------------------------------~~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~l-~~~~- 319 (379)
.+++|+.|+++.+...+.. ++.++....|++ .+..
T Consensus 590 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 669 (768)
T 3rgz_A 590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669 (768)
T ss_dssp SEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred cccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccC
Confidence 1355667777555443222 223344446777 3333
Q ss_pred -cchHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCCccCCCCC
Q 016966 320 -CLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLALNPAES 377 (379)
Q Consensus 320 -~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 377 (379)
.+|+.++.+ ++|+.|++++|. ....+|..+.. +++|++|++++|+....+|..
T Consensus 670 g~ip~~l~~L-~~L~~LdLs~N~--l~g~ip~~l~~--l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 670 GSIPDEVGDL-RGLNILDLSSNK--LDGRIPQAMSA--LTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp SCCCGGGGGC-TTCCEEECCSSC--CEECCCGGGGG--CCCCSEEECCSSEEEEECCSS
T ss_pred CCCChHHhCC-CCCCEEECCCCc--ccCcCChHHhC--CCCCCEEECcCCcccccCCCc
Confidence 378888885 999999999998 55578877654 999999999999988777654
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=1.3e-23 Score=207.81 Aligned_cols=256 Identities=12% Similarity=0.132 Sum_probs=185.6
Q ss_pred CCC-CCCCCCccEEEeecCCCCCC--CCCCCc--------ccChhhhh--CCCceeEEEecCCC----CCccccCCCCCc
Q 016966 102 LPE-VLECPQLELLFIRGGGRDDP--WETSPV--------TIPDNFFK--SMIEVRVVNLTDMI----LPSSLGLLSNLR 164 (379)
Q Consensus 102 ~~~-~~~~~~L~~L~l~~n~~~~~--~~~~~~--------~~~~~~~~--~l~~L~~L~l~~~~----lp~~i~~l~~L~ 164 (379)
+|. +..+++|++|++++|.+... +..+.. .+|..+ . ++++|++|++++|. +|..++++++|+
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 444 34789999999999776430 000000 066654 5 79999999999997 888999999999
Q ss_pred EEEeecCC-CCC---cccccCc------CCCcEEEeeCCcCcccch--hhcCCCCCCEEeccCCCCCcccChhhhCCCCC
Q 016966 165 TLSLCSCG-LPD---ISFVGYL------KKLEILCLRGSDIVKLPV--EVGELTWLKLLDLRDCCFLKVIPPNILSKLSH 232 (379)
Q Consensus 165 ~L~l~~~~-l~~---~~~~~~l------~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~ 232 (379)
+|++++|. ++. |..++++ ++|++|++++|.++.+|. .++.+++|++|++++|...+.+| . ++.+++
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~ 354 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIK 354 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEE
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCC
Confidence 99999998 873 6777776 999999999999999998 89999999999999988777888 4 799999
Q ss_pred CcEEEecCCCCcChhhhhhcccccchHhhcCCCC-CcEEEeeccCCCCCCcccc---ccCCcEEEEEeecccccCcc---
Q 016966 233 LEELYIGRESFVDWEEEVEGVKNASLEELKHLPN-LTSLEVHVRDVSSLPRGLL---LEKLERYSIYIRRYFSRKTG--- 305 (379)
Q Consensus 233 L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~--- 305 (379)
|+.|++++|.+.. ++..+..+++ |+.|++++|.++.+|..+. +++|+.|+++.+........
T Consensus 355 L~~L~L~~N~l~~-----------lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 423 (636)
T 4eco_A 355 LASLNLAYNQITE-----------IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD 423 (636)
T ss_dssp ESEEECCSSEEEE-----------CCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSC
T ss_pred CCEEECCCCcccc-----------ccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhc
Confidence 9999999998874 5677888888 9999999999998887662 44788888866655432222
Q ss_pred -------cccceEEEEe--CCcccchHHHHHHhcccceeecccccccccccccccccccc------CCCCcEEEecCCCC
Q 016966 306 -------IWCRQFRVEL--NNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVG------SSHLKRLRLEGSDL 370 (379)
Q Consensus 306 -------~~~~~~~L~l--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~------~~~L~~L~l~~c~~ 370 (379)
...+...|.+ +....+|..+...+++|++|++++|. ++.++...+... +++|++|++++|..
T Consensus 424 ~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~---l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 500 (636)
T 4eco_A 424 PLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM---LTEIPKNSLKDENENFKNTYLLTSIDLRFNKL 500 (636)
T ss_dssp TTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSC---CSBCCSSSSEETTEECTTGGGCCEEECCSSCC
T ss_pred ccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCC---CCCcCHHHhccccccccccCCccEEECcCCcC
Confidence 2224557777 33334666555434777777777776 455554433210 11555555555555
Q ss_pred ccCC
Q 016966 371 ALNP 374 (379)
Q Consensus 371 l~~~ 374 (379)
..+|
T Consensus 501 ~~lp 504 (636)
T 4eco_A 501 TKLS 504 (636)
T ss_dssp CBCC
T ss_pred CccC
Confidence 5444
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=6.7e-23 Score=202.75 Aligned_cols=275 Identities=13% Similarity=0.157 Sum_probs=181.6
Q ss_pred ccCCccEEEEeCCCC-CCCCC-CCCCCCccEEEeecCC-CCCCCCCCCc-ccChhhhhCC------CceeEEEecCCC--
Q 016966 85 TIKHFTSIVLHGIKP-NLLPE-VLECPQLELLFIRGGG-RDDPWETSPV-TIPDNFFKSM------IEVRVVNLTDMI-- 152 (379)
Q Consensus 85 ~~~~l~~L~l~~~~~-~~~~~-~~~~~~L~~L~l~~n~-~~~~~~~~~~-~~~~~~~~~l------~~L~~L~l~~~~-- 152 (379)
.++++++|++++|.+ ..+|. +..+++|+.|++++|. + .. .+|..+ ..+ ++|++|++++|.
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l-------~~~~lp~~~-~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI-------SGEQLKDDW-QALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTS-------CHHHHHHHH-HHHHHSGGGGTCCEEECCSSCCS
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCC-------ccccchHHH-HhhhccccCCCCCEEECCCCcCC
Confidence 788999999999987 66775 4489999999999976 4 33 466554 334 899999999998
Q ss_pred -CCc--cccCCCCCcEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccchhhcCCCC-CCEEeccCCCCCcccChhhh
Q 016966 153 -LPS--SLGLLSNLRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPVEVGELTW-LKLLDLRDCCFLKVIPPNIL 227 (379)
Q Consensus 153 -lp~--~i~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~-L~~L~l~~~~~~~~~~~~~l 227 (379)
+|. .++.+++|++|++++|.+.. .+.++.+++|++|++++|.++.+|..+..+++ |++|++++|... .+|.. +
T Consensus 319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~-~ 396 (636)
T 4eco_A 319 TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNI-F 396 (636)
T ss_dssp SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSC-C
T ss_pred ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchh-h
Confidence 887 88999999999999999884 33888888999999999988888888888888 889988887755 66754 4
Q ss_pred CCCC--CCcEEEecCCCCcChhhhhhc--------------------ccccchH-hhcCCCCCcEEEeeccCCCCCCccc
Q 016966 228 SKLS--HLEELYIGRESFVDWEEEVEG--------------------VKNASLE-ELKHLPNLTSLEVHVRDVSSLPRGL 284 (379)
Q Consensus 228 ~~l~--~L~~L~l~~~~~~~~~~~~~~--------------------~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~ 284 (379)
+.++ +|+.|++++|.+.+..+...+ ....++. .+..+++|+.|++++|.++.+|...
T Consensus 397 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~ 476 (636)
T 4eco_A 397 DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNS 476 (636)
T ss_dssp CTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSS
T ss_pred hhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHH
Confidence 5443 777777777777553211000 0011222 2334566666666666666555543
Q ss_pred -c-c-------cCCcEEEEEeecccccCcc------cccceEEEEe--CCcccchHHHHHHhcccceeecc------ccc
Q 016966 285 -L-L-------EKLERYSIYIRRYFSRKTG------IWCRQFRVEL--NNKICLKDSLIVQLQRIEDLELS------ELQ 341 (379)
Q Consensus 285 -~-~-------~~L~~L~l~~~~~~~~~~~------~~~~~~~L~l--~~~~~~~~~~~~~~~~L~~L~l~------~~~ 341 (379)
. . ++|+.|+++.+... ..+ .+++...|++ +....+|..+..+ ++|+.|+++ +|.
T Consensus 477 ~~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l-~~L~~L~Ls~N~~ls~N~ 553 (636)
T 4eco_A 477 LKDENENFKNTYLLTSIDLRFNKLT--KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNS-STLKGFGIRNQRDAQGNR 553 (636)
T ss_dssp SEETTEECTTGGGCCEEECCSSCCC--BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGC-SSCCEEECCSCBCTTCCB
T ss_pred hccccccccccCCccEEECcCCcCC--ccChhhhhccCCCcCEEECCCCCCCCcChhhhcC-CCCCEEECCCCcccccCc
Confidence 1 1 16666666444333 111 2334446666 2333355555553 777777773 333
Q ss_pred cccccccccccccccCCCCcEEEecCCCCccCCCC
Q 016966 342 EQDVDYFRNELVKVGSSHLKRLRLEGSDLALNPAE 376 (379)
Q Consensus 342 ~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 376 (379)
....+|..+.. +++|++|++++|....+|..
T Consensus 554 --l~~~~p~~l~~--l~~L~~L~Ls~N~l~~ip~~ 584 (636)
T 4eco_A 554 --TLREWPEGITL--CPSLTQLQIGSNDIRKVNEK 584 (636)
T ss_dssp --CCCCCCTTGGG--CSSCCEEECCSSCCCBCCSC
T ss_pred --ccccChHHHhc--CCCCCEEECCCCcCCccCHh
Confidence 34455555443 77777777777777555543
No 12
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=1.2e-22 Score=205.43 Aligned_cols=276 Identities=18% Similarity=0.126 Sum_probs=195.9
Q ss_pred CccCCccEEEEeCCCCC-CCCC--CCCCCCccEEEeecCCCCCCCCCC------------------CcccChhhhhC--C
Q 016966 84 STIKHFTSIVLHGIKPN-LLPE--VLECPQLELLFIRGGGRDDPWETS------------------PVTIPDNFFKS--M 140 (379)
Q Consensus 84 ~~~~~l~~L~l~~~~~~-~~~~--~~~~~~L~~L~l~~n~~~~~~~~~------------------~~~~~~~~~~~--l 140 (379)
..++++++|++++|.+. .+|. +..+++|+.|++++|.+....-.. ...++..+ .. +
T Consensus 315 ~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~-~~~~~ 393 (768)
T 3rgz_A 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL-CQNPK 393 (768)
T ss_dssp GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTT-TCSTT
T ss_pred hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhh-hhccc
Confidence 45667777777777663 5553 346677777777765542110000 11122221 12 5
Q ss_pred CceeEEEecCCC----CCccccCCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCc-ccchhhcCCCCCCEEec
Q 016966 141 IEVRVVNLTDMI----LPSSLGLLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIV-KLPVEVGELTWLKLLDL 213 (379)
Q Consensus 141 ~~L~~L~l~~~~----lp~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l 213 (379)
++|++|++++|. .|..++.+++|++|++++|.+.. |..++.+++|++|++++|.+. .+|..+..+++|++|++
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 473 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473 (768)
T ss_dssp CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEe
Confidence 667777777776 67778888888888888888765 677888888888888888777 67777888888888888
Q ss_pred cCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCC-CCCccc-cccCCcE
Q 016966 214 RDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVS-SLPRGL-LLEKLER 291 (379)
Q Consensus 214 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~ 291 (379)
++|...+.+|.. ++.+++|+.|++++|.+.+. .+..++.+++|+.|++++|.+. .+|..+ .+++|+.
T Consensus 474 ~~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~----------~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 542 (768)
T 3rgz_A 474 DFNDLTGEIPSG-LSNCTNLNWISLSNNRLTGE----------IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 542 (768)
T ss_dssp CSSCCCSCCCGG-GGGCTTCCEEECCSSCCCSC----------CCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCE
T ss_pred cCCcccCcCCHH-HhcCCCCCEEEccCCccCCc----------CChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCE
Confidence 888777777776 68888888888888887753 4778889999999999999988 778777 7899999
Q ss_pred EEEEeecccccCcc------------------------------------------------------------------
Q 016966 292 YSIYIRRYFSRKTG------------------------------------------------------------------ 305 (379)
Q Consensus 292 L~l~~~~~~~~~~~------------------------------------------------------------------ 305 (379)
|+++.+...+....
T Consensus 543 L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g 622 (768)
T 3rgz_A 543 LDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622 (768)
T ss_dssp EECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEE
T ss_pred EECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecc
Confidence 99865543211110
Q ss_pred -------cccceEEEEe-CCcc--cchHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCCccCCC
Q 016966 306 -------IWCRQFRVEL-NNKI--CLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLALNPA 375 (379)
Q Consensus 306 -------~~~~~~~L~l-~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 375 (379)
.+.....|++ .+.. .+|..++.+ ++|+.|++++|. ....+|..+.. +++|+.|++++|.....+|
T Consensus 623 ~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l-~~L~~L~Ls~N~--l~g~ip~~l~~--L~~L~~LdLs~N~l~g~ip 697 (768)
T 3rgz_A 623 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM-PYLFILNLGHND--ISGSIPDEVGD--LRGLNILDLSSNKLDGRIP 697 (768)
T ss_dssp ECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGC-TTCCEEECCSSC--CCSCCCGGGGG--CTTCCEEECCSSCCEECCC
T ss_pred cCchhhhccccccEEECcCCcccccCCHHHhcc-ccCCEEeCcCCc--cCCCCChHHhC--CCCCCEEECCCCcccCcCC
Confidence 0112236777 3433 367778885 999999999998 55588887765 9999999999999986666
Q ss_pred C
Q 016966 376 E 376 (379)
Q Consensus 376 ~ 376 (379)
.
T Consensus 698 ~ 698 (768)
T 3rgz_A 698 Q 698 (768)
T ss_dssp G
T ss_pred h
Confidence 4
No 13
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=1.5e-22 Score=184.12 Aligned_cols=216 Identities=20% Similarity=0.216 Sum_probs=181.5
Q ss_pred cCCccEEEEeCCCCCCCCCCC-CCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCC
Q 016966 86 IKHFTSIVLHGIKPNLLPEVL-ECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLS 161 (379)
Q Consensus 86 ~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~ 161 (379)
..+++.|+++++.+..+|... .+++|+.|++++|.+. .+|.. |..+++|++|++++|. +|..++.++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~--------~lp~~-~~~l~~L~~L~Ls~n~l~~lp~~l~~l~ 150 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM--------ELPDT-MQQFAGLETLTLARNPLRALPASIASLN 150 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC--------CCCSC-GGGGTTCSEEEEESCCCCCCCGGGGGCT
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc--------chhHH-HhccCCCCEEECCCCccccCcHHHhcCc
Confidence 478999999999998888744 8999999999997653 45654 5789999999999998 898999999
Q ss_pred CCcEEEeecCCCCC--ccccc---------CcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCC
Q 016966 162 NLRTLSLCSCGLPD--ISFVG---------YLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKL 230 (379)
Q Consensus 162 ~L~~L~l~~~~l~~--~~~~~---------~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l 230 (379)
+|++|++++|.+.. |..++ .+++|++|++++|.++.+|..++.+++|++|++++|... .+|.. ++.+
T Consensus 151 ~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~-l~~l 228 (328)
T 4fcg_A 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPA-IHHL 228 (328)
T ss_dssp TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCGG-GGGC
T ss_pred CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCchh-hccC
Confidence 99999999987544 66555 499999999999999999999999999999999997765 56766 7999
Q ss_pred CCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCC-CCCccc-cccCCcEEEEEeecccccCccccc
Q 016966 231 SHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVS-SLPRGL-LLEKLERYSIYIRRYFSRKTGIWC 308 (379)
Q Consensus 231 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~ 308 (379)
++|+.|++++|.+.+. .+..++.+++|+.|++++|.+. .+|..+ .+++|+.|+++.+...
T Consensus 229 ~~L~~L~Ls~n~~~~~----------~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~-------- 290 (328)
T 4fcg_A 229 PKLEELDLRGCTALRN----------YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL-------- 290 (328)
T ss_dssp TTCCEEECTTCTTCCB----------CCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC--------
T ss_pred CCCCEEECcCCcchhh----------hHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch--------
Confidence 9999999999888764 4678899999999999987766 788776 7899999998544433
Q ss_pred ceEEEEeCCcccchHHHHHHhcccceeeccccc
Q 016966 309 RQFRVELNNKICLKDSLIVQLQRIEDLELSELQ 341 (379)
Q Consensus 309 ~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 341 (379)
..+|+++..+ ++|+.+.+..+.
T Consensus 291 ----------~~iP~~l~~L-~~L~~l~l~~~~ 312 (328)
T 4fcg_A 291 ----------SRLPSLIAQL-PANCIILVPPHL 312 (328)
T ss_dssp ----------CCCCGGGGGS-CTTCEEECCGGG
T ss_pred ----------hhccHHHhhc-cCceEEeCCHHH
Confidence 3467777775 999999888765
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=8.6e-23 Score=206.32 Aligned_cols=255 Identities=13% Similarity=0.138 Sum_probs=184.9
Q ss_pred CCC-CCCCCCccEEEeecCCCCCC--CCCCCc--------ccChhh-hhCCCceeEEEecCCC----CCccccCCCCCcE
Q 016966 102 LPE-VLECPQLELLFIRGGGRDDP--WETSPV--------TIPDNF-FKSMIEVRVVNLTDMI----LPSSLGLLSNLRT 165 (379)
Q Consensus 102 ~~~-~~~~~~L~~L~l~~n~~~~~--~~~~~~--------~~~~~~-~~~l~~L~~L~l~~~~----lp~~i~~l~~L~~ 165 (379)
+|. +..+++|+.|++++|.+... ...+.. .+|+.+ |.++++|++|++++|. +|..++++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 444 34889999999999876430 000000 267665 4589999999999987 8889999999999
Q ss_pred EEeecCC-CCC---cccccCcC-------CCcEEEeeCCcCcccch--hhcCCCCCCEEeccCCCCCcccChhhhCCCCC
Q 016966 166 LSLCSCG-LPD---ISFVGYLK-------KLEILCLRGSDIVKLPV--EVGELTWLKLLDLRDCCFLKVIPPNILSKLSH 232 (379)
Q Consensus 166 L~l~~~~-l~~---~~~~~~l~-------~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~ 232 (379)
|++++|. ++. |..+++++ +|++|++++|.++.+|. .++++++|++|++++|... .+| . ++.+++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~-~~~L~~ 596 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-A-FGTNVK 596 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-C-CCTTSE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-h-hcCCCc
Confidence 9999998 773 56666655 99999999999999998 8999999999999998765 888 4 899999
Q ss_pred CcEEEecCCCCcChhhhhhcccccchHhhcCCCC-CcEEEeeccCCCCCCccc-c--ccCCcEEEEEeecccccCccccc
Q 016966 233 LEELYIGRESFVDWEEEVEGVKNASLEELKHLPN-LTSLEVHVRDVSSLPRGL-L--LEKLERYSIYIRRYFSRKTGIWC 308 (379)
Q Consensus 233 L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~-~--~~~L~~L~l~~~~~~~~~~~~~~ 308 (379)
|+.|++++|.+.. ++..+..+++ |+.|++++|.+..+|..+ . .++|+.|+++.+...+ ..+.++
T Consensus 597 L~~L~Ls~N~l~~-----------lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g-~ip~l~ 664 (876)
T 4ecn_A 597 LTDLKLDYNQIEE-----------IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGS-EGRNIS 664 (876)
T ss_dssp ESEEECCSSCCSC-----------CCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTT-TSSSCS
T ss_pred ceEEECcCCcccc-----------chHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCC-ccccch
Confidence 9999999999874 5677888888 999999999999888765 2 2458888886655432 112222
Q ss_pred ---------ceEEEEe--CCcccchHHHHHHhcccceeeccccccccccccccccccc------cCCCCcEEEecCCCCc
Q 016966 309 ---------RQFRVEL--NNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKV------GSSHLKRLRLEGSDLA 371 (379)
Q Consensus 309 ---------~~~~L~l--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~------~~~~L~~L~l~~c~~l 371 (379)
+...|.+ +....+|..+...+++|+.|++++|. +..+|...+.. .+++|+.|++++|...
T Consensus 665 ~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~---L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~ 741 (876)
T 4ecn_A 665 CSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL---MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT 741 (876)
T ss_dssp SCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC---CSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC
T ss_pred hhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc---CCccChHHhccccccccccCCccEEECCCCCCc
Confidence 4456777 33344666665434777777777776 55666544321 1226666666666555
Q ss_pred cCC
Q 016966 372 LNP 374 (379)
Q Consensus 372 ~~~ 374 (379)
.+|
T Consensus 742 ~lp 744 (876)
T 4ecn_A 742 SLS 744 (876)
T ss_dssp CCC
T ss_pred cch
Confidence 444
No 15
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=2.1e-21 Score=185.78 Aligned_cols=189 Identities=24% Similarity=0.245 Sum_probs=153.4
Q ss_pred cEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccccCCCCCcE
Q 016966 90 TSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGLLSNLRT 165 (379)
Q Consensus 90 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~l~~L~~ 165 (379)
+.+..+++.+..+|... .++++.|++++|.+ ..+++..|.++++|++|++++|. .|..+..+++|++
T Consensus 14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l--------~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 84 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKNRI--------KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRT 84 (477)
T ss_dssp TEEECCSCCCSSCCSCC-CTTCSEEECCSSCC--------CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEECCCCcc--------ceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCE
Confidence 46667777777777633 46899999999764 44555668999999999999998 5788999999999
Q ss_pred EEeecCCCCC-c-ccccCcCCCcEEEeeCCcCccc-chhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCC
Q 016966 166 LSLCSCGLPD-I-SFVGYLKKLEILCLRGSDIVKL-PVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRES 242 (379)
Q Consensus 166 L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 242 (379)
|++++|.+.. + ..+.++++|++|++++|.+..+ |..+..+++|++|++++|......+.. ++.+++|+.|++.+|.
T Consensus 85 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~ 163 (477)
T 2id5_A 85 LGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRA-FSGLNSLEQLTLEKCN 163 (477)
T ss_dssp EECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTS-STTCTTCCEEEEESCC
T ss_pred EECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhh-ccCCCCCCEEECCCCc
Confidence 9999999988 5 4578999999999999999866 457889999999999997765555544 8999999999999999
Q ss_pred CcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCcc-c-cccCCcEEEEEeec
Q 016966 243 FVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRG-L-LLEKLERYSIYIRR 298 (379)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~ 298 (379)
+.... ...+..+++|+.|+++.|.+..++.. + .+++|+.|+++.+.
T Consensus 164 l~~~~----------~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~ 211 (477)
T 2id5_A 164 LTSIP----------TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211 (477)
T ss_dssp CSSCC----------HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCT
T ss_pred CcccC----------hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCc
Confidence 88753 46688889999999998888865543 2 57778888776543
No 16
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=1.5e-21 Score=192.43 Aligned_cols=137 Identities=22% Similarity=0.159 Sum_probs=113.4
Q ss_pred cCcCCCCCCccCCccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC-
Q 016966 76 GCREWSDGSTIKHFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI- 152 (379)
Q Consensus 76 ~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~- 152 (379)
++...+. ...+++++|++++|.+..++. +..+++|+.|++++|. ...+++..|.++++|++|++++|.
T Consensus 22 ~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--------l~~i~~~~~~~l~~L~~L~Ls~n~l 92 (606)
T 3vq2_A 22 KLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE--------IETIEDKAWHGLHHLSNLILTGNPI 92 (606)
T ss_dssp CCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC--------CCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCc--------ccccCHHHhhchhhcCEeECCCCcc
Confidence 3444444 345889999999999976664 5589999999999965 445666667899999999999998
Q ss_pred ---CCccccCCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCc--ccchhhcCCCCCCEEeccCCCCCcc
Q 016966 153 ---LPSSLGLLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIV--KLPVEVGELTWLKLLDLRDCCFLKV 221 (379)
Q Consensus 153 ---lp~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~ 221 (379)
.|..++.+++|++|++++|.+.. +..++++++|++|++++|.+. .+|..++++++|++|++++|.....
T Consensus 93 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 93 QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred cccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence 47889999999999999999887 477999999999999999887 5788999999999999999765443
No 17
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.88 E-value=9.5e-22 Score=193.81 Aligned_cols=212 Identities=17% Similarity=0.141 Sum_probs=154.7
Q ss_pred CcCCCCCCccCCccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC--
Q 016966 77 CREWSDGSTIKHFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI-- 152 (379)
Q Consensus 77 ~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-- 152 (379)
+...+. ...+.+++|++++|.+..+++ +..+++|++|++++|.+ ..+++..|.++++|++|++++|.
T Consensus 24 l~~iP~-~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i--------~~~~~~~~~~l~~L~~L~Ls~n~l~ 94 (606)
T 3t6q_A 24 LNEIPG-TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI--------YWIHEDTFQSQHRLDTLVLTANPLI 94 (606)
T ss_dssp CSSCCT-TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCC--------CEECTTTTTTCTTCCEEECTTCCCS
T ss_pred cccCcC-CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCcc--------ceeChhhccCccccCeeeCCCCccc
Confidence 334443 345689999999999966643 45899999999999654 34555567889999999999997
Q ss_pred --CCccccCCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCcccc-hhhcCCCCCCEEeccCCCCCcccChhhh
Q 016966 153 --LPSSLGLLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIVKLP-VEVGELTWLKLLDLRDCCFLKVIPPNIL 227 (379)
Q Consensus 153 --lp~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l 227 (379)
.|..++.+++|++|++++|.+.. +..++.+++|++|++++|.+..++ ..+..+++|++|++++|......+. .+
T Consensus 95 ~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~ 173 (606)
T 3t6q_A 95 FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE-DM 173 (606)
T ss_dssp EECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHH-HH
T ss_pred ccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChh-hh
Confidence 57788999999999999999888 577889999999999999888663 3445589999999998765544344 37
Q ss_pred CCCCCCc--EEEecCCCCcChhhhhhcc----------------------------------------------------
Q 016966 228 SKLSHLE--ELYIGRESFVDWEEEVEGV---------------------------------------------------- 253 (379)
Q Consensus 228 ~~l~~L~--~L~l~~~~~~~~~~~~~~~---------------------------------------------------- 253 (379)
+.+++|+ .|++++|.+....+...+.
T Consensus 174 ~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~ 253 (606)
T 3t6q_A 174 SSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE 253 (606)
T ss_dssp HTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGG
T ss_pred hhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhc
Confidence 8888888 7888887766543221110
Q ss_pred ------------cc-cchHhhcCCCCCcEEEeeccCCCCCCccc-cccCCcEEEEEeec
Q 016966 254 ------------KN-ASLEELKHLPNLTSLEVHVRDVSSLPRGL-LLEKLERYSIYIRR 298 (379)
Q Consensus 254 ------------~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~ 298 (379)
.. ..+..++.+++|+.|++++|.++.+|..+ .+++|+.|+++.+.
T Consensus 254 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~ 312 (606)
T 3t6q_A 254 MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANK 312 (606)
T ss_dssp SEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCC
T ss_pred CceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCC
Confidence 00 01223667788888888888888777766 57778888775443
No 18
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.88 E-value=7.7e-22 Score=187.54 Aligned_cols=238 Identities=20% Similarity=0.225 Sum_probs=186.0
Q ss_pred ccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccccCCCCCc
Q 016966 89 FTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGLLSNLR 164 (379)
Q Consensus 89 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~l~~L~ 164 (379)
.+.+...+..+..+|... .++++.|++++|.+ ..+++..|.++++|++|++++|. .+..+..+++|+
T Consensus 56 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i--------~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 126 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNI--------QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLN 126 (452)
T ss_dssp SCEEECCSSCCSSCCSCC-CTTCSEEECCSSCC--------CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CcEEEECCCCcCccCCCC-CCCccEEECcCCcC--------ceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCC
Confidence 456777777777777532 36899999999654 44555667899999999999998 557788999999
Q ss_pred EEEeecCCCCC-c-ccccCcCCCcEEEeeCCcCcccch-hhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCC
Q 016966 165 TLSLCSCGLPD-I-SFVGYLKKLEILCLRGSDIVKLPV-EVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRE 241 (379)
Q Consensus 165 ~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 241 (379)
+|++++|.+.. + ..+..+++|++|++++|.+..+|. .+.++++|++|++++|+....++...+..+++|+.|++++|
T Consensus 127 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n 206 (452)
T 3zyi_A 127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206 (452)
T ss_dssp EEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS
T ss_pred EEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC
Confidence 99999999888 4 558889999999999999998875 67889999999999988888888777889999999999999
Q ss_pred CCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCc-cc-cccCCcEEEEEeecccccCcccccceEEEEeCCcc
Q 016966 242 SFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPR-GL-LLEKLERYSIYIRRYFSRKTGIWCRQFRVELNNKI 319 (379)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~l~~~~ 319 (379)
.+... +.+..+++|+.|++++|.+..++. .+ .+++|+.|+++.+... .
T Consensus 207 ~l~~~------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~------------------~ 256 (452)
T 3zyi_A 207 NIKDM------------PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS------------------L 256 (452)
T ss_dssp CCSSC------------CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCC------------------E
T ss_pred ccccc------------ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCc------------------e
Confidence 88763 357788999999999999986643 44 6888999888443332 0
Q ss_pred cchHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCC
Q 016966 320 CLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDL 370 (379)
Q Consensus 320 ~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 370 (379)
..+..+.. +++|+.|++++|. ++.++...+ ..+++|+.|++++|+.
T Consensus 257 ~~~~~~~~-l~~L~~L~L~~N~---l~~~~~~~~-~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 257 IERNAFDG-LASLVELNLAHNN---LSSLPHDLF-TPLRYLVELHLHHNPW 302 (452)
T ss_dssp ECTTTTTT-CTTCCEEECCSSC---CSCCCTTSS-TTCTTCCEEECCSSCE
T ss_pred ECHHHhcC-CCCCCEEECCCCc---CCccChHHh-ccccCCCEEEccCCCc
Confidence 11233344 4889999999997 777776543 3588999999998874
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=1e-21 Score=192.99 Aligned_cols=254 Identities=17% Similarity=0.164 Sum_probs=153.0
Q ss_pred cCCccEEEEeCCCCCCCCCC--CCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccccC
Q 016966 86 IKHFTSIVLHGIKPNLLPEV--LECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGL 159 (379)
Q Consensus 86 ~~~l~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~ 159 (379)
+.+++.+++.++.+..+|.. ..+++|+.|++++|.+ ..+++..|..+++|++|++++|. .|..++.
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l--------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 121 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI--------EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 121 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCC--------CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCC--------CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcC
Confidence 34556666666665555542 2556666666666432 23343345566666666666665 3334566
Q ss_pred CCCCcEEEeecCCCCC-ccc-ccCcCCCcEEEeeCCcCcccch-hhcCCCCCCEEeccCCCCCcccChhhhCCCCC----
Q 016966 160 LSNLRTLSLCSCGLPD-ISF-VGYLKKLEILCLRGSDIVKLPV-EVGELTWLKLLDLRDCCFLKVIPPNILSKLSH---- 232 (379)
Q Consensus 160 l~~L~~L~l~~~~l~~-~~~-~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~---- 232 (379)
+++|++|++++|.+.. |+. ++.+++|++|++++|.+..+++ .++.+++|++|++++|.... ++ ++.+++
T Consensus 122 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~---~~~l~~L~~L 197 (597)
T 3oja_B 122 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD---LSLIPSLFHA 197 (597)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CC---GGGCTTCSEE
T ss_pred CCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cC---hhhhhhhhhh
Confidence 6666666666666655 333 3566666666666666655443 45566666666666654322 22 122233
Q ss_pred ------------------------------------CcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccC
Q 016966 233 ------------------------------------LEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRD 276 (379)
Q Consensus 233 ------------------------------------L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 276 (379)
|+.|++++|.+.+ +..++.+++|+.|++++|.
T Consensus 198 ~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~------------~~~l~~l~~L~~L~Ls~N~ 265 (597)
T 3oja_B 198 NVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD------------TAWLLNYPGLVEVDLSYNE 265 (597)
T ss_dssp ECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC------------CGGGGGCTTCSEEECCSSC
T ss_pred hcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC------------ChhhccCCCCCEEECCCCc
Confidence 3333333333332 3567788889999998888
Q ss_pred CCCC-Cccc-cccCCcEEEEEeecccc--cCcccccceEEEEe--CCcccchHHHHHHhcccceeecccccccccccccc
Q 016966 277 VSSL-PRGL-LLEKLERYSIYIRRYFS--RKTGIWCRQFRVEL--NNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRN 350 (379)
Q Consensus 277 ~~~~-~~~~-~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~l--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~ 350 (379)
+..+ |..+ .+++|+.|+++.+.... .....+++...|++ +....+|.++..+ ++|+.|++++|. +..++
T Consensus 266 l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l-~~L~~L~L~~N~---l~~~~- 340 (597)
T 3oja_B 266 LEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQF-DRLENLYLDHNS---IVTLK- 340 (597)
T ss_dssp CCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHH-TTCSEEECCSSC---CCCCC-
T ss_pred cCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccC-CCCCEEECCCCC---CCCcC-
Confidence 8854 4444 67888888885544331 12233556668888 4444577777774 999999999997 66654
Q ss_pred ccccccCCCCcEEEecCCCCc
Q 016966 351 ELVKVGSSHLKRLRLEGSDLA 371 (379)
Q Consensus 351 ~~~~~~~~~L~~L~l~~c~~l 371 (379)
...+++|++|++++|+..
T Consensus 341 ---~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 341 ---LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp ---CCTTCCCSEEECCSSCEE
T ss_pred ---hhhcCCCCEEEeeCCCCC
Confidence 234899999999998853
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=4e-22 Score=201.50 Aligned_cols=278 Identities=13% Similarity=0.141 Sum_probs=190.6
Q ss_pred ccCCccEEEEeCCCC-CCCCC-CCCCCCccEEEeecCC-CCCCCCCCCc-ccChhh------hhCCCceeEEEecCCC--
Q 016966 85 TIKHFTSIVLHGIKP-NLLPE-VLECPQLELLFIRGGG-RDDPWETSPV-TIPDNF------FKSMIEVRVVNLTDMI-- 152 (379)
Q Consensus 85 ~~~~l~~L~l~~~~~-~~~~~-~~~~~~L~~L~l~~n~-~~~~~~~~~~-~~~~~~------~~~l~~L~~L~l~~~~-- 152 (379)
.++++++|++++|.+ ..+|. +..+++|+.|++++|. + .. .+|..+ +..+++|++|++++|.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~l-------sg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGI-------SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTS-------CHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCc-------ccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 788999999999986 66775 4489999999999975 4 33 355433 2244589999999888
Q ss_pred -CCc--cccCCCCCcEEEeecCCCCCcccccCcCCCcEEEeeCCcCcccchhhcCCCC-CCEEeccCCCCCcccChhhhC
Q 016966 153 -LPS--SLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTW-LKLLDLRDCCFLKVIPPNILS 228 (379)
Q Consensus 153 -lp~--~i~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~-L~~L~l~~~~~~~~~~~~~l~ 228 (379)
+|. .++.+++|++|++++|.+...+.++.+++|++|++++|.+..+|..+..+++ |++|++++|... .+|.. ++
T Consensus 562 ~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~-~~ 639 (876)
T 4ecn_A 562 EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNI-FN 639 (876)
T ss_dssp BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSC-CC
T ss_pred ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchh-hh
Confidence 777 7888999999999998887733888888999999999888888888888888 899988887654 66654 45
Q ss_pred CCCC--CcEEEecCCCCcChhhhhhc------------------ccccchHhh-cCCCCCcEEEeeccCCCCCCcccc--
Q 016966 229 KLSH--LEELYIGRESFVDWEEEVEG------------------VKNASLEEL-KHLPNLTSLEVHVRDVSSLPRGLL-- 285 (379)
Q Consensus 229 ~l~~--L~~L~l~~~~~~~~~~~~~~------------------~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~-- 285 (379)
.++. |+.|++++|.+.+..+.... ....++..+ ..+++|+.|++++|.+..+|....
T Consensus 640 ~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~ 719 (876)
T 4ecn_A 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKP 719 (876)
T ss_dssp TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSC
T ss_pred ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhcc
Confidence 5443 77777777766543211100 111133333 467778888888877777776541
Q ss_pred -------ccCCcEEEEEeecccc--cCcc--cccceEEEEe--CCcccchHHHHHHhcccceeeccc------ccccccc
Q 016966 286 -------LEKLERYSIYIRRYFS--RKTG--IWCRQFRVEL--NNKICLKDSLIVQLQRIEDLELSE------LQEQDVD 346 (379)
Q Consensus 286 -------~~~L~~L~l~~~~~~~--~~~~--~~~~~~~L~l--~~~~~~~~~~~~~~~~L~~L~l~~------~~~~~l~ 346 (379)
+++|+.|+++.+.... .... .+++...|++ +....+|..+..+ ++|+.|++++ |. ...
T Consensus 720 ~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L-~~L~~L~Ls~N~~ls~N~--l~~ 796 (876)
T 4ecn_A 720 KDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNS-SQLKAFGIRHQRDAEGNR--ILR 796 (876)
T ss_dssp TTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGC-TTCCEEECCCCBCTTCCB--CCC
T ss_pred ccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcC-CCCCEEECCCCCCccccc--ccc
Confidence 1277888775554431 1111 3345557777 3333466666664 8888888866 44 345
Q ss_pred ccccccccccCCCCcEEEecCCCCccCCCC
Q 016966 347 YFRNELVKVGSSHLKRLRLEGSDLALNPAE 376 (379)
Q Consensus 347 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 376 (379)
.+|..+.. +++|+.|++++|....+|..
T Consensus 797 ~ip~~l~~--L~~L~~L~Ls~N~L~~Ip~~ 824 (876)
T 4ecn_A 797 QWPTGITT--CPSLIQLQIGSNDIRKVDEK 824 (876)
T ss_dssp CCCTTGGG--CSSCCEEECCSSCCCBCCSC
T ss_pred cChHHHhc--CCCCCEEECCCCCCCccCHh
Confidence 56655543 88888888888888655554
No 21
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=1e-21 Score=183.14 Aligned_cols=254 Identities=14% Similarity=0.130 Sum_probs=166.5
Q ss_pred CCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccccCCCCCcEEEeecCCCCC--cccc
Q 016966 106 LECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGLLSNLRTLSLCSCGLPD--ISFV 179 (379)
Q Consensus 106 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~l~~L~~L~l~~~~l~~--~~~~ 179 (379)
..+++++.|.+.+|. ...+|..+|..+++|++|+++++. .+..+..+++|++|++++|.+.. +..+
T Consensus 42 ~~l~~l~~l~l~~~~--------l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 113 (390)
T 3o6n_A 42 ITLNNQKIVTFKNST--------MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF 113 (390)
T ss_dssp GGGCCCSEEEEESCE--------ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cccCCceEEEecCCc--------hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHh
Confidence 367899999999954 567888889999999999999998 44588999999999999999988 4668
Q ss_pred cCcCCCcEEEeeCCcCcccchh-hcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhccccc--
Q 016966 180 GYLKKLEILCLRGSDIVKLPVE-VGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNA-- 256 (379)
Q Consensus 180 ~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-- 256 (379)
+.+++|++|++++|.++.+|.. +..+++|++|++++|......+. .++.+++|+.|++++|.+.............
T Consensus 114 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~ 192 (390)
T 3o6n_A 114 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSNRLTHVDLSLIPSLFHAN 192 (390)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT-TTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEE
T ss_pred cCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChh-hccCCCCCCEEECCCCcCCccccccccccceee
Confidence 9999999999999999999976 48999999999999876554444 4799999999999999987643111000000
Q ss_pred ----chHhhcCCC---------------------CCcEEEeeccCCCCCCccccccCCcEEEEEeecccc---cCccccc
Q 016966 257 ----SLEELKHLP---------------------NLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYFS---RKTGIWC 308 (379)
Q Consensus 257 ----~~~~l~~l~---------------------~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~ 308 (379)
....+...+ +|+.|++++|.++..+....+++|+.|+++.+.... ..+..++
T Consensus 193 l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 272 (390)
T 3o6n_A 193 VSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 272 (390)
T ss_dssp CCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred cccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccc
Confidence 000011112 344444444444433322245556666654433221 1122333
Q ss_pred ceEEEEe-CC-cccchHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCCccCC
Q 016966 309 RQFRVEL-NN-KICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLALNP 374 (379)
Q Consensus 309 ~~~~L~l-~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 374 (379)
+...|.+ ++ ...++..... +++|+.|++++|. ++.++..+.. +++|++|++++|+....+
T Consensus 273 ~L~~L~L~~n~l~~~~~~~~~-l~~L~~L~L~~n~---l~~~~~~~~~--l~~L~~L~L~~N~i~~~~ 334 (390)
T 3o6n_A 273 RLERLYISNNRLVALNLYGQP-IPTLKVLDLSHNH---LLHVERNQPQ--FDRLENLYLDHNSIVTLK 334 (390)
T ss_dssp SCCEEECCSSCCCEEECSSSC-CTTCCEEECCSSC---CCCCGGGHHH--HTTCSEEECCSSCCCCCC
T ss_pred cCCEEECCCCcCcccCcccCC-CCCCCEEECCCCc---ceecCccccc--cCcCCEEECCCCccceeC
Confidence 4445555 22 2223333333 3666666666665 5555554432 666777777766665543
No 22
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=4.1e-21 Score=183.25 Aligned_cols=270 Identities=20% Similarity=0.244 Sum_probs=140.8
Q ss_pred CCccCCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CC-----
Q 016966 83 GSTIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LP----- 154 (379)
Q Consensus 83 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp----- 154 (379)
...++++++|++++|.+..++.+..+++|++|++++|.+.+ +++ +..+++|++|++++|. ++
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~--------~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l 155 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD--------IDP--LKNLTNLNRLELSSNTISDISALSGL 155 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--------CGG--GTTCTTCSEEEEEEEEECCCGGGTTC
T ss_pred hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCC--------ChH--HcCCCCCCEEECCCCccCCChhhccC
Confidence 44556667777766666555555566666666666654432 221 3445555555554443 11
Q ss_pred ---------------ccccCCCCCcEEEeecCCCCCcccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCC
Q 016966 155 ---------------SSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFL 219 (379)
Q Consensus 155 ---------------~~i~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~ 219 (379)
..+..+++|++|++++|.+..++.+..+++|++|++++|.+..++. ++.+++|++|++++|...
T Consensus 156 ~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~ 234 (466)
T 1o6v_A 156 TSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLK 234 (466)
T ss_dssp TTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCC
T ss_pred CcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcc
Confidence 1245556666666666666554446666666666666666655543 555566666666654432
Q ss_pred cccChhhhCCCCCCcEEEecCCCCcChhhhhhc------------ccccchHhhcCCCCCcEEEeeccCCCCCCcccccc
Q 016966 220 KVIPPNILSKLSHLEELYIGRESFVDWEEEVEG------------VKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLE 287 (379)
Q Consensus 220 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~------------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 287 (379)
.++. +..+++|+.|++++|.+....+ ..+ .....+ .+..+++|+.|++++|.+..++....++
T Consensus 235 -~~~~--l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~l~ 309 (466)
T 1o6v_A 235 -DIGT--LASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNIS-PLAGLTALTNLELNENQLEDISPISNLK 309 (466)
T ss_dssp -CCGG--GGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCSCCGGGGGCT
T ss_pred -cchh--hhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCccc-cccCCCccCeEEcCCCcccCchhhcCCC
Confidence 2222 4455555555555555543220 000 000011 1455556666666666555544433556
Q ss_pred CCcEEEEEeecccccC-cccccceEEEEe-CCcccchHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEe
Q 016966 288 KLERYSIYIRRYFSRK-TGIWCRQFRVEL-NNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRL 365 (379)
Q Consensus 288 ~L~~L~l~~~~~~~~~-~~~~~~~~~L~l-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l 365 (379)
+|+.|+++.+...... ...+++...|.+ ++.....+.+..+ ++|+.|++++|. +..++. + ..+++|+.|++
T Consensus 310 ~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l-~~L~~L~l~~n~---l~~~~~-~--~~l~~L~~L~l 382 (466)
T 1o6v_A 310 NLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANL-TNINWLSAGHNQ---ISDLTP-L--ANLTRITQLGL 382 (466)
T ss_dssp TCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCGGGTTC-TTCCEEECCSSC---CCBCGG-G--TTCTTCCEEEC
T ss_pred CCCEEECcCCcCCCchhhccCccCCEeECCCCccCCchhhccC-CCCCEEeCCCCc---cCccch-h--hcCCCCCEEec
Confidence 6666666444332111 223344446666 3333333344443 677777777776 444333 2 24777777777
Q ss_pred cCCCCccCCC
Q 016966 366 EGSDLALNPA 375 (379)
Q Consensus 366 ~~c~~l~~~~ 375 (379)
++|+....|.
T Consensus 383 ~~n~~~~~p~ 392 (466)
T 1o6v_A 383 NDQAWTNAPV 392 (466)
T ss_dssp CCEEEECCCB
T ss_pred cCCcccCCch
Confidence 7777666543
No 23
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.88 E-value=1.7e-21 Score=184.47 Aligned_cols=238 Identities=21% Similarity=0.270 Sum_probs=184.7
Q ss_pred ccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccccCCCCCc
Q 016966 89 FTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGLLSNLR 164 (379)
Q Consensus 89 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~l~~L~ 164 (379)
.+.+...+..+..+|... .++++.|++++|.+ ..++...|.++++|++|++++|. .+..+..+++|+
T Consensus 45 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i--------~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~ 115 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGI-STNTRLLNLHENQI--------QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLN 115 (440)
T ss_dssp SCEEECCSCCCSSCCSCC-CTTCSEEECCSCCC--------CEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCC
T ss_pred CCEEEeCCCCcCcCCCCC-CCCCcEEEccCCcC--------CeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCC
Confidence 456777777777777533 36889999999654 44555667889999999999988 456788899999
Q ss_pred EEEeecCCCCC-c-ccccCcCCCcEEEeeCCcCcccch-hhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCC
Q 016966 165 TLSLCSCGLPD-I-SFVGYLKKLEILCLRGSDIVKLPV-EVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRE 241 (379)
Q Consensus 165 ~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 241 (379)
+|++++|.++. + ..+..+++|++|++++|.+..+|. .+..+++|++|++++|+....++...+..+++|+.|++++|
T Consensus 116 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n 195 (440)
T 3zyj_A 116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC 195 (440)
T ss_dssp EEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS
T ss_pred EEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC
Confidence 99999999888 4 468889999999999999998875 67889999999999988888888776889999999999999
Q ss_pred CCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCC-ccc-cccCCcEEEEEeecccccCcccccceEEEEeCCcc
Q 016966 242 SFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLP-RGL-LLEKLERYSIYIRRYFSRKTGIWCRQFRVELNNKI 319 (379)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~l~~~~ 319 (379)
.+... +.+..+++|+.|++++|.++.++ ..+ .+++|+.|++..+....
T Consensus 196 ~l~~~------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------------ 245 (440)
T 3zyj_A 196 NLREI------------PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV------------------ 245 (440)
T ss_dssp CCSSC------------CCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE------------------
T ss_pred cCccc------------cccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeE------------------
Confidence 88763 35778889999999999988664 344 68889998884433320
Q ss_pred cchHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCC
Q 016966 320 CLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDL 370 (379)
Q Consensus 320 ~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 370 (379)
..+..+.. +++|+.|+|++|. ++.++...+ ..+++|+.|++++|+.
T Consensus 246 ~~~~~~~~-l~~L~~L~L~~N~---l~~~~~~~~-~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 246 IERNAFDN-LQSLVEINLAHNN---LTLLPHDLF-TPLHHLERIHLHHNPW 291 (440)
T ss_dssp ECTTSSTT-CTTCCEEECTTSC---CCCCCTTTT-SSCTTCCEEECCSSCE
T ss_pred EChhhhcC-CCCCCEEECCCCC---CCccChhHh-ccccCCCEEEcCCCCc
Confidence 01222333 4889999999987 777776543 3588999999988874
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=3.4e-21 Score=183.81 Aligned_cols=270 Identities=20% Similarity=0.200 Sum_probs=140.3
Q ss_pred CCCCccCCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccc
Q 016966 81 SDGSTIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSL 157 (379)
Q Consensus 81 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i 157 (379)
+....++++++|++++|.+..++.+..+++|+.|.+++|.+.. +++ +..+++|++|++++|. ++ .+
T Consensus 62 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~--------~~~--~~~l~~L~~L~L~~n~l~~~~-~~ 130 (466)
T 1o6v_A 62 DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD--------ITP--LANLTNLTGLTLFNNQITDID-PL 130 (466)
T ss_dssp TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--------CGG--GTTCTTCCEEECCSSCCCCCG-GG
T ss_pred cchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCcccc--------Chh--hcCCCCCCEEECCCCCCCCCh-HH
Confidence 3345566777777777777666665577777777777755432 232 5667777777777776 33 36
Q ss_pred cCCCCCcEEEeecCCCCCcccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEE
Q 016966 158 GLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELY 237 (379)
Q Consensus 158 ~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 237 (379)
..+++|++|++++|.+...+.++.+++|++|++.+ .+..++ .+..+++|++|++++|.. ..++. +..+++|++|+
T Consensus 131 ~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~-~~~~~~-~~~~l~~L~~L~l~~n~l-~~~~~--l~~l~~L~~L~ 205 (466)
T 1o6v_A 131 KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGN-QVTDLK-PLANLTTLERLDISSNKV-SDISV--LAKLTNLESLI 205 (466)
T ss_dssp TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEE-SCCCCG-GGTTCTTCCEEECCSSCC-CCCGG--GGGCTTCSEEE
T ss_pred cCCCCCCEEECCCCccCCChhhccCCcccEeecCC-cccCch-hhccCCCCCEEECcCCcC-CCChh--hccCCCCCEEE
Confidence 77777777777777666533344444444444432 222222 244555555555555432 22221 34455555555
Q ss_pred ecCCCCcChhhhhh----------cccccchHhhcCCCCCcEEEeeccCCCCCCccccccCCcEEEEEeeccccc-Cccc
Q 016966 238 IGRESFVDWEEEVE----------GVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYFSR-KTGI 306 (379)
Q Consensus 238 l~~~~~~~~~~~~~----------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~ 306 (379)
+++|.+.+..+... +..-.....+..+++|+.|++++|.+..++....+++|+.|+++.+..... ....
T Consensus 206 l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 285 (466)
T 1o6v_A 206 ATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG 285 (466)
T ss_dssp CCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTT
T ss_pred ecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccC
Confidence 55554443220000 000000123455566666666666655544422456666666644332211 1223
Q ss_pred ccceEEEEe-CCcccchHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCCccC
Q 016966 307 WCRQFRVEL-NNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLALN 373 (379)
Q Consensus 307 ~~~~~~L~l-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 373 (379)
+++...|.+ .+.......+.. +++|+.|++++|. +..++. + ..+++|++|++++|+....
T Consensus 286 l~~L~~L~L~~n~l~~~~~~~~-l~~L~~L~L~~n~---l~~~~~-~--~~l~~L~~L~l~~n~l~~~ 346 (466)
T 1o6v_A 286 LTALTNLELNENQLEDISPISN-LKNLTYLTLYFNN---ISDISP-V--SSLTKLQRLFFYNNKVSDV 346 (466)
T ss_dssp CTTCSEEECCSSCCSCCGGGGG-CTTCSEEECCSSC---CSCCGG-G--GGCTTCCEEECCSSCCCCC
T ss_pred CCccCeEEcCCCcccCchhhcC-CCCCCEEECcCCc---CCCchh-h--ccCccCCEeECCCCccCCc
Confidence 344446666 333332222444 3777777777776 444433 2 2477777777777765543
No 25
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.88 E-value=1.7e-21 Score=188.43 Aligned_cols=155 Identities=14% Similarity=0.177 Sum_probs=110.2
Q ss_pred cCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCC-CC
Q 016966 203 GELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSS-LP 281 (379)
Q Consensus 203 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~ 281 (379)
..+++|++|++++|...+..|.. ++.+++|+.|++++|.+.+.+ ..+..++.+++|+.|++++|.+.. +|
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~l~--------~~~~~~~~l~~L~~L~Ls~N~l~~~l~ 391 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFEN-CGHLTELETLILQMNQLKELS--------KIAEMTTQMKSLQQLDISQNSVSYDEK 391 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTT-CCCCSSCCEEECCSSCCCBHH--------HHHHHHTTCTTCCEEECCSSCCBCCGG
T ss_pred hhCCcccEEEeECCccChhhhhh-hccCCCCCEEEccCCccCccc--------cchHHHhhCCCCCEEECCCCcCCcccc
Confidence 56677777888777766656655 677888888888888777532 135668888899999999888886 77
Q ss_pred ccc--cccCCcEEEEEeecccccCcccc-cceEEEEe--CCcccchHHHHHHhcccceeecccccccccccccccccccc
Q 016966 282 RGL--LLEKLERYSIYIRRYFSRKTGIW-CRQFRVEL--NNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVG 356 (379)
Q Consensus 282 ~~~--~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~l--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~ 356 (379)
... .+++|+.|+++.+.........+ ++...|++ +....+|..+.. +++|++|++++|. ++.+|.... ..
T Consensus 392 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~-l~~L~~L~L~~N~---l~~l~~~~~-~~ 466 (520)
T 2z7x_B 392 KGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVK-LEALQELNVASNQ---LKSVPDGIF-DR 466 (520)
T ss_dssp GCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGG-CTTCCEEECCSSC---CCCCCTTTT-TT
T ss_pred cchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhc-CCCCCEEECCCCc---CCccCHHHh-cc
Confidence 653 57888998886655433333333 35557888 444457777775 4889999999887 777777622 24
Q ss_pred CCCCcEEEecCCCCc
Q 016966 357 SSHLKRLRLEGSDLA 371 (379)
Q Consensus 357 ~~~L~~L~l~~c~~l 371 (379)
+++|++|++++|+..
T Consensus 467 l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 467 LTSLQKIWLHTNPWD 481 (520)
T ss_dssp CTTCCEEECCSSCBC
T ss_pred CCcccEEECcCCCCc
Confidence 888999999888764
No 26
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=2.7e-22 Score=181.27 Aligned_cols=226 Identities=13% Similarity=0.160 Sum_probs=183.5
Q ss_pred CCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecC-CC----CCccccCCCCCcEEEeecCCCCC--cccccC
Q 016966 109 PQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTD-MI----LPSSLGLLSNLRTLSLCSCGLPD--ISFVGY 181 (379)
Q Consensus 109 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~----lp~~i~~l~~L~~L~l~~~~l~~--~~~~~~ 181 (379)
.+++.|++.+|.+.. ...+|.. |.++++|++|++++ +. +|..++.+++|++|++++|.+.. |..+.+
T Consensus 50 ~~l~~L~L~~~~l~~-----~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 123 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPK-----PYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ 123 (313)
T ss_dssp CCEEEEEEECCCCSS-----CEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG
T ss_pred ceEEEEECCCCCccC-----CcccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhC
Confidence 579999999976632 1146654 58899999999995 65 88899999999999999999985 788999
Q ss_pred cCCCcEEEeeCCcCc-ccchhhcCCCCCCEEeccCCCCCcccChhhhCCCC-CCcEEEecCCCCcChhhhhhcccccchH
Q 016966 182 LKKLEILCLRGSDIV-KLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLS-HLEELYIGRESFVDWEEEVEGVKNASLE 259 (379)
Q Consensus 182 l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 259 (379)
+++|++|++++|.++ .+|..+..+++|++|++++|...+.+|.. ++.++ +|+.|++++|.+.+. .+.
T Consensus 124 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~----------~~~ 192 (313)
T 1ogq_A 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGK----------IPP 192 (313)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEE----------CCG
T ss_pred CCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeecc----------CCh
Confidence 999999999999998 78889999999999999998887788887 78888 999999999988743 466
Q ss_pred hhcCCCCCcEEEeeccCCC-CCCccc-cccCCcEEEEEeecccccCcccccceEEEEeCCcccchHHHHHHhcccceeec
Q 016966 260 ELKHLPNLTSLEVHVRDVS-SLPRGL-LLEKLERYSIYIRRYFSRKTGIWCRQFRVELNNKICLKDSLIVQLQRIEDLEL 337 (379)
Q Consensus 260 ~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l 337 (379)
.++.++ |+.|++++|.+. ..|..+ .+++|+.|+++.+... ..++.+.. +++|++|++
T Consensus 193 ~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-------------------~~~~~~~~-l~~L~~L~L 251 (313)
T 1ogq_A 193 TFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA-------------------FDLGKVGL-SKNLNGLDL 251 (313)
T ss_dssp GGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC-------------------CBGGGCCC-CTTCCEEEC
T ss_pred HHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee-------------------eecCcccc-cCCCCEEEC
Confidence 777776 999999999988 455444 6899999998544432 11111223 489999999
Q ss_pred cccccccccccccccccccCCCCcEEEecCCCCccCCCC
Q 016966 338 SELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLALNPAE 376 (379)
Q Consensus 338 ~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 376 (379)
++|. ....+|..+.. +++|++|++++|+....+|.
T Consensus 252 s~N~--l~~~~p~~l~~--l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 252 RNNR--IYGTLPQGLTQ--LKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp CSSC--CEECCCGGGGG--CTTCCEEECCSSEEEEECCC
T ss_pred cCCc--ccCcCChHHhc--CcCCCEEECcCCcccccCCC
Confidence 9998 33367776654 99999999999999855554
No 27
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=2.8e-21 Score=175.98 Aligned_cols=256 Identities=16% Similarity=0.179 Sum_probs=128.9
Q ss_pred CccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccccCCCCC
Q 016966 88 HFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGLLSNL 163 (379)
Q Consensus 88 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~l~~L 163 (379)
+++.++++++.+..+|... .+.++.|++++|.+ ..+++..|..+++|++|++++|. .|..+..+++|
T Consensus 32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i--------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKI--------TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCC--------CCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred CCeEEEecCCCccccCccC-CCCCeEEECCCCcC--------CEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCC
Confidence 4455555555444444321 24455555555432 22333334555555555555554 24445555555
Q ss_pred cEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccch-hhcCCCCCCEEeccCCCCCc--ccChhhhCCCCCCcEEEec
Q 016966 164 RTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPV-EVGELTWLKLLDLRDCCFLK--VIPPNILSKLSHLEELYIG 239 (379)
Q Consensus 164 ~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~--~~~~~~l~~l~~L~~L~l~ 239 (379)
++|++++|.++. |..+. ++|++|++++|.+..++. .+..+++|++|++++|.... ..+.. ++.+++|+.|+++
T Consensus 103 ~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~l~~L~~L~l~ 179 (330)
T 1xku_A 103 ERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA-FQGMKKLSYIRIA 179 (330)
T ss_dssp CEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTG-GGGCTTCCEEECC
T ss_pred CEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhh-ccCCCCcCEEECC
Confidence 555555555544 33322 455555555555554443 34555555555555544321 22222 4555555555555
Q ss_pred CCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCC-ccc-cccCCcEEEEEeeccccc---CcccccceEEEE
Q 016966 240 RESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLP-RGL-LLEKLERYSIYIRRYFSR---KTGIWCRQFRVE 314 (379)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~-~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~ 314 (379)
+|.+...+ ..+. ++|+.|++++|.+..++ ..+ .+++|+.|+++.+..... .+..+++...|+
T Consensus 180 ~n~l~~l~-----------~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 246 (330)
T 1xku_A 180 DTNITTIP-----------QGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH 246 (330)
T ss_dssp SSCCCSCC-----------SSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEE
T ss_pred CCccccCC-----------cccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEE
Confidence 55544321 1111 44555555555544332 222 345555555533322211 112223333444
Q ss_pred e--CCcccchHHHHHHhcccceeeccccccccccccccccccc-----cCCCCcEEEecCCCCcc
Q 016966 315 L--NNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKV-----GSSHLKRLRLEGSDLAL 372 (379)
Q Consensus 315 l--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~-----~~~~L~~L~l~~c~~l~ 372 (379)
+ +....+|.++..+ ++|++|++++|. ++.++...+.. .++.|+.|++.+|+...
T Consensus 247 L~~N~l~~lp~~l~~l-~~L~~L~l~~N~---i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 247 LNNNKLVKVPGGLADH-KYIQVVYLHNNN---ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp CCSSCCSSCCTTTTTC-SSCCEEECCSSC---CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred CCCCcCccCChhhccC-CCcCEEECCCCc---CCccChhhcCCcccccccccccceEeecCcccc
Confidence 4 2223466666664 999999999997 77777654421 25789999999999753
No 28
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.87 E-value=1.4e-21 Score=190.27 Aligned_cols=144 Identities=21% Similarity=0.305 Sum_probs=90.6
Q ss_pred cCCccEEEEeCCCCCCCC--CCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CC-ccccC
Q 016966 86 IKHFTSIVLHGIKPNLLP--EVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LP-SSLGL 159 (379)
Q Consensus 86 ~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp-~~i~~ 159 (379)
.+++++|++++|.+..++ .+..+++|++|++++|.+ ..+++..|..+++|++|++++|. .+ ..++.
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i--------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 96 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI--------NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGP 96 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCC--------CEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTT
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCc--------CccChhhccccccCCEEECCCCccCccCHHHhcc
Confidence 467777777777775443 244777777777777543 33444456677777777777776 33 33677
Q ss_pred CCCCcEEEeecCCCCC---cccccCcCCCcEEEeeCCc-Ccccc-hhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCc
Q 016966 160 LSNLRTLSLCSCGLPD---ISFVGYLKKLEILCLRGSD-IVKLP-VEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLE 234 (379)
Q Consensus 160 l~~L~~L~l~~~~l~~---~~~~~~l~~L~~L~l~~~~-l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 234 (379)
+++|++|++++|.+.. +..++++++|++|++++|. +..+| ..+..+++|++|++++|......|.. ++.+++|+
T Consensus 97 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~ 175 (549)
T 2z81_A 97 LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIH 175 (549)
T ss_dssp CTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEE
T ss_pred CCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhccccCc
Confidence 7777777777777653 4566777777777777775 55565 35667777777777776655544443 34433333
Q ss_pred EEEe
Q 016966 235 ELYI 238 (379)
Q Consensus 235 ~L~l 238 (379)
+|++
T Consensus 176 ~L~l 179 (549)
T 2z81_A 176 HLTL 179 (549)
T ss_dssp EEEE
T ss_pred eEec
Confidence 3333
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.87 E-value=1.3e-21 Score=186.13 Aligned_cols=239 Identities=15% Similarity=0.149 Sum_probs=150.9
Q ss_pred CCccCCccEEEEeCCCCC-CCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCc
Q 016966 83 GSTIKHFTSIVLHGIKPN-LLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPS 155 (379)
Q Consensus 83 ~~~~~~l~~L~l~~~~~~-~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~ 155 (379)
...++++++|++++|.+. .++. +..+++|++|++++|.+ ..+++..|.++++|++|++++|. .|.
T Consensus 50 ~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l--------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 121 (455)
T 3v47_A 50 FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF--------LQLETGAFNGLANLEVLTLTQCNLDGAVLS 121 (455)
T ss_dssp TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT--------CEECTTTTTTCTTCCEEECTTSCCBTHHHH
T ss_pred hccCccccEEECcCCcccceECcccccccccCCEEeCCCCcc--------CccChhhccCcccCCEEeCCCCCCCccccC
Confidence 345667777777777662 3332 34667777777777543 22333345666677777776666 132
Q ss_pred c--ccCCCCCcEEEeecCCCCC--ccc-ccCcCCCcEEEeeCCcCcccch-hhc--------------------------
Q 016966 156 S--LGLLSNLRTLSLCSCGLPD--ISF-VGYLKKLEILCLRGSDIVKLPV-EVG-------------------------- 203 (379)
Q Consensus 156 ~--i~~l~~L~~L~l~~~~l~~--~~~-~~~l~~L~~L~l~~~~l~~lp~-~~~-------------------------- 203 (379)
. +..+++|++|++++|.+.. |.. +.++++|++|++++|.+..++. .+.
T Consensus 122 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~ 201 (455)
T 3v47_A 122 GNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG 201 (455)
T ss_dssp SSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTT
T ss_pred cccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcc
Confidence 2 5666667777776666655 322 5666666666666665553321 111
Q ss_pred --------CCCC---------------------------------------------------------------CCEEe
Q 016966 204 --------ELTW---------------------------------------------------------------LKLLD 212 (379)
Q Consensus 204 --------~l~~---------------------------------------------------------------L~~L~ 212 (379)
.+++ |++|+
T Consensus 202 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 281 (455)
T 3v47_A 202 WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCD 281 (455)
T ss_dssp HHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEE
T ss_pred ccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEE
Confidence 1233 44444
Q ss_pred ccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCc-cc-cccCCc
Q 016966 213 LRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPR-GL-LLEKLE 290 (379)
Q Consensus 213 l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~-~~~~L~ 290 (379)
+++|......|.. ++.+++|+.|++++|.+.+. .+..++.+++|+.|++++|.+..++. .+ .+++|+
T Consensus 282 l~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~----------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 350 (455)
T 3v47_A 282 LSKSKIFALLKSV-FSHFTDLEQLTLAQNEINKI----------DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLE 350 (455)
T ss_dssp CCSSCCCEECTTT-TTTCTTCCEEECTTSCCCEE----------CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCC
T ss_pred ecCccccccchhh-cccCCCCCEEECCCCccccc----------ChhHhcCcccCCEEECCCCccCCcChhHhcCcccCC
Confidence 4444433333433 67788888888888887764 25678899999999999999986644 43 689999
Q ss_pred EEEEEeeccccc---CcccccceEEEEe-CC-cccchHHH-HHHhcccceeeccccc
Q 016966 291 RYSIYIRRYFSR---KTGIWCRQFRVEL-NN-KICLKDSL-IVQLQRIEDLELSELQ 341 (379)
Q Consensus 291 ~L~l~~~~~~~~---~~~~~~~~~~L~l-~~-~~~~~~~~-~~~~~~L~~L~l~~~~ 341 (379)
.|+++.+..... .+..+++...|++ ++ ...+|... .. +++|+.|++++|+
T Consensus 351 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~l~~N~ 406 (455)
T 3v47_A 351 VLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDR-LTSLQKIWLHTNP 406 (455)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTT-CTTCCEEECCSSC
T ss_pred EEECCCCcccccChhhccccccccEEECCCCccccCCHhHhcc-CCcccEEEccCCC
Confidence 999976655422 3344566678999 43 33455443 45 5999999999998
No 30
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.87 E-value=6.7e-22 Score=178.20 Aligned_cols=192 Identities=18% Similarity=0.135 Sum_probs=97.8
Q ss_pred cCCccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCC
Q 016966 86 IKHFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLL 160 (379)
Q Consensus 86 ~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l 160 (379)
.+++++|++++|.+..++. +..+++|+.|++++|.+.. ....+.. +..+++|++|++++|. +|..+..+
T Consensus 27 ~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~-~~~~~~L~~L~Ls~n~i~~l~~~~~~l 100 (306)
T 2z66_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF-----KGCCSQS-DFGTTSLKYLDLSFNGVITMSSNFLGL 100 (306)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCE-----EEEEEHH-HHSCSCCCEEECCSCSEEEEEEEEETC
T ss_pred CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCc-----ccCcccc-cccccccCEEECCCCccccChhhcCCC
Confidence 3455666666665555554 2355566666665544321 1111222 2345566666666555 44455555
Q ss_pred CCCcEEEeecCCCCC-c--ccccCcCCCcEEEeeCCcCccc-chhhcCCCCCCEEeccCCCCCc-ccChhhhCCCCCCcE
Q 016966 161 SNLRTLSLCSCGLPD-I--SFVGYLKKLEILCLRGSDIVKL-PVEVGELTWLKLLDLRDCCFLK-VIPPNILSKLSHLEE 235 (379)
Q Consensus 161 ~~L~~L~l~~~~l~~-~--~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~ 235 (379)
++|++|++++|.+.. + ..+..+++|++|++++|.+... |..+..+++|++|++++|.... ..|.. ++.+++|+.
T Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~l~~L~~ 179 (306)
T 2z66_A 101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FTELRNLTF 179 (306)
T ss_dssp TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSC-CTTCTTCCE
T ss_pred CCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhH-HhhCcCCCE
Confidence 666666666555544 2 3455555666666665555532 2345555566666665554433 23333 455556666
Q ss_pred EEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccc--cccCCcEEEE
Q 016966 236 LYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGL--LLEKLERYSI 294 (379)
Q Consensus 236 L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l 294 (379)
|++++|.+.+.. +..+..+++|+.|++++|.++.++... .+++|+.|++
T Consensus 180 L~Ls~n~l~~~~----------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 230 (306)
T 2z66_A 180 LDLSQCQLEQLS----------PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 230 (306)
T ss_dssp EECTTSCCCEEC----------TTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEEC
T ss_pred EECCCCCcCCcC----------HHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeEC
Confidence 666655554421 344555555666666555555444321 3444444444
No 31
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.87 E-value=1.1e-21 Score=191.95 Aligned_cols=283 Identities=18% Similarity=0.121 Sum_probs=196.4
Q ss_pred cCcCCCCCCccCCccEEEEeCCCCCCCC--CCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC-
Q 016966 76 GCREWSDGSTIKHFTSIVLHGIKPNLLP--EVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI- 152 (379)
Q Consensus 76 ~~~~~~~~~~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~- 152 (379)
++...+. ...+++++|++++|.+..++ .+..+++|++|++++|. ...+++..|.++++|++|++++|.
T Consensus 18 ~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--------i~~i~~~~~~~l~~L~~L~L~~n~l 88 (570)
T 2z63_A 18 NFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE--------IQTIEDGAYQSLSHLSTLILTGNPI 88 (570)
T ss_dssp CCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC--------CCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCc--------CCccCcccccCchhCCEEeCcCCcC
Confidence 3444443 34578999999999986665 35589999999999965 445666678899999999999997
Q ss_pred ---CCccccCCCCCcEEEeecCCCCC-c-ccccCcCCCcEEEeeCCcCcc--cchhhcCCCCCCEEeccCCCCCcccChh
Q 016966 153 ---LPSSLGLLSNLRTLSLCSCGLPD-I-SFVGYLKKLEILCLRGSDIVK--LPVEVGELTWLKLLDLRDCCFLKVIPPN 225 (379)
Q Consensus 153 ---lp~~i~~l~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~ 225 (379)
.|..++.+++|++|++++|.+.. + ..++++++|++|++++|.+.. +|..++++++|++|++++|......+..
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~ 168 (570)
T 2z63_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (570)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGG
T ss_pred CccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHH
Confidence 45788999999999999999888 4 368899999999999998884 7888999999999999997654443333
Q ss_pred hhCCCCCC----cEEEecCCCCcChhhhhhc-------------------------------------------------
Q 016966 226 ILSKLSHL----EELYIGRESFVDWEEEVEG------------------------------------------------- 252 (379)
Q Consensus 226 ~l~~l~~L----~~L~l~~~~~~~~~~~~~~------------------------------------------------- 252 (379)
++.+++| +.|++++|.+....+....
T Consensus 169 -~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~ 247 (570)
T 2z63_A 169 -LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247 (570)
T ss_dssp -GHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECC
T ss_pred -ccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcc
Confidence 4555555 6666666655433211100
Q ss_pred ----------------------ccccchHhhcCCCCCcEEEeeccCCCCCCccc-cccCCcEEEEEeecccccCc-----
Q 016966 253 ----------------------VKNASLEELKHLPNLTSLEVHVRDVSSLPRGL-LLEKLERYSIYIRRYFSRKT----- 304 (379)
Q Consensus 253 ----------------------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~----- 304 (379)
.....+..++.+++|+.|+++++.+..+|..+ .+ +|+.|++..+.......
T Consensus 248 ~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~ 326 (570)
T 2z63_A 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKS 326 (570)
T ss_dssp TTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSS
T ss_pred hhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcccccc
Confidence 00112344556677888888877777766655 33 66666664433221111
Q ss_pred -----------------ccccceEEEEe-CCccc-c---hHHHHHHhcccceeeccccccccccccccccccccCCCCcE
Q 016966 305 -----------------GIWCRQFRVEL-NNKIC-L---KDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKR 362 (379)
Q Consensus 305 -----------------~~~~~~~~L~l-~~~~~-~---~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~ 362 (379)
..+++...|++ .+... . +..+..+ ++|++|++++|. +..++..+. .+++|++
T Consensus 327 L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-~~L~~L~l~~n~---l~~~~~~~~--~l~~L~~ 400 (570)
T 2z63_A 327 LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT-TSLKYLDLSFNG---VITMSSNFL--GLEQLEH 400 (570)
T ss_dssp CCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTC-SCCCEEECCSCS---EEEEEEEEE--TCTTCCE
T ss_pred cCEEeCcCCccccccccccCCCCCEEeCcCCccCcccccccccccc-CccCEEECCCCc---ccccccccc--ccCCCCE
Confidence 23344447777 33322 2 4556664 889999999987 666666543 4899999
Q ss_pred EEecCCCCccCCC
Q 016966 363 LRLEGSDLALNPA 375 (379)
Q Consensus 363 L~l~~c~~l~~~~ 375 (379)
|++++|.....++
T Consensus 401 L~l~~n~l~~~~~ 413 (570)
T 2z63_A 401 LDFQHSNLKQMSE 413 (570)
T ss_dssp EECTTSEEESCTT
T ss_pred EEccCCccccccc
Confidence 9999998877655
No 32
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=3.2e-21 Score=188.33 Aligned_cols=155 Identities=14% Similarity=0.166 Sum_probs=101.4
Q ss_pred cCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCC-CC
Q 016966 203 GELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSS-LP 281 (379)
Q Consensus 203 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~ 281 (379)
..+++|++|++++|...+..|.. ++.+++|+.|++++|.+.+.. ..+..++.+++|+.|++++|.+.. +|
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~--------~~~~~~~~l~~L~~L~l~~N~l~~~~~ 420 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQG-CSTLKRLQTLILQRNGLKNFF--------KVALMTKNMSSLETLDVSLNSLNSHAY 420 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTT-CCSCSSCCEEECCSSCCCBTT--------HHHHTTTTCTTCCEEECTTSCCBSCCS
T ss_pred cCCCCceEEECCCCccccchhhh-hcccCCCCEEECCCCCcCCcc--------cchhhhcCCCCCCEEECCCCcCCCccC
Confidence 45667777777776665555554 577777777777777766532 134557777888888888888775 76
Q ss_pred ccc--cccCCcEEEEEeecccccCcccc-cceEEEEe--CCcccchHHHHHHhcccceeecccccccccccccccccccc
Q 016966 282 RGL--LLEKLERYSIYIRRYFSRKTGIW-CRQFRVEL--NNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVG 356 (379)
Q Consensus 282 ~~~--~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~l--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~ 356 (379)
... .+++|+.|+++.+.........+ ++...|++ +....+|.++.. +++|+.|++++|. ++.+|.... ..
T Consensus 421 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~-l~~L~~L~L~~N~---l~~l~~~~~-~~ 495 (562)
T 3a79_B 421 DRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTH-LQALQELNVASNQ---LKSVPDGVF-DR 495 (562)
T ss_dssp SCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTS-SCCCSEEECCSSC---CCCCCTTST-TT
T ss_pred hhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcC-CCCCCEEECCCCC---CCCCCHHHH-hc
Confidence 653 56788888876555443333334 34557777 333446666665 4788888888886 667776521 24
Q ss_pred CCCCcEEEecCCCCc
Q 016966 357 SSHLKRLRLEGSDLA 371 (379)
Q Consensus 357 ~~~L~~L~l~~c~~l 371 (379)
+++|+.|++++|+..
T Consensus 496 l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 496 LTSLQYIWLHDNPWD 510 (562)
T ss_dssp CTTCCCEECCSCCBC
T ss_pred CCCCCEEEecCCCcC
Confidence 788888888887754
No 33
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.87 E-value=3.1e-21 Score=190.16 Aligned_cols=262 Identities=14% Similarity=0.084 Sum_probs=150.5
Q ss_pred CccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccccCCC
Q 016966 88 HFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGLLS 161 (379)
Q Consensus 88 ~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~l~ 161 (379)
+++.|++++|.+..++. +..+++|+.|++++|.+ ..+|.. +..+++|++|++++|. .|..+..++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--------~~lp~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 325 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL--------SELPSG-LVGLSTLKKLVLSANKFENLCQISASNFP 325 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCC--------SCCCSS-CCSCTTCCEEECTTCCCSBGGGGCGGGCT
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCcc--------CCCChh-hcccccCCEEECccCCcCcCchhhhhccC
Confidence 56677777777655554 33667777777777543 234443 3566777777777776 345666777
Q ss_pred CCcEEEeecCCCCC--c-ccccCcCCCcEEEeeCCcCccc---chhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcE
Q 016966 162 NLRTLSLCSCGLPD--I-SFVGYLKKLEILCLRGSDIVKL---PVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEE 235 (379)
Q Consensus 162 ~L~~L~l~~~~l~~--~-~~~~~l~~L~~L~l~~~~l~~l---p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 235 (379)
+|++|++++|.+.. + ..+..+++|++|++++|.+..+ |..+..+++|++|++++|......|.. ++.+++|+.
T Consensus 326 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~ 404 (606)
T 3t6q_A 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA-FKECPQLEL 404 (606)
T ss_dssp TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTT-TTTCTTCSE
T ss_pred cCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHH-hcCCccCCe
Confidence 77777777776553 2 3466677777777777766644 445667777777777776554444433 566777777
Q ss_pred EEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCC-ccc-cccCCcEEEEEeecccc------cCcccc
Q 016966 236 LYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLP-RGL-LLEKLERYSIYIRRYFS------RKTGIW 307 (379)
Q Consensus 236 L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~-~~~~L~~L~l~~~~~~~------~~~~~~ 307 (379)
|++++|.+.... ....++.+++|+.|++++|.+...+ ..+ .+++|+.|+++.+.... .....+
T Consensus 405 L~l~~n~l~~~~---------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l 475 (606)
T 3t6q_A 405 LDLAFTRLKVKD---------AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL 475 (606)
T ss_dssp EECTTCCEECCT---------TCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGC
T ss_pred EECCCCcCCCcc---------cchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccC
Confidence 777776665432 1223556666666666666665333 223 46666666664443321 112233
Q ss_pred cceEEEEe-CCccc-c-hHHHHHHhcccceeecccccccccccc-ccccccccCCCCcEEEecCCCCccCCC
Q 016966 308 CRQFRVEL-NNKIC-L-KDSLIVQLQRIEDLELSELQEQDVDYF-RNELVKVGSSHLKRLRLEGSDLALNPA 375 (379)
Q Consensus 308 ~~~~~L~l-~~~~~-~-~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~~~~~~~L~~L~l~~c~~l~~~~ 375 (379)
++...|++ .+... . |..+..+ ++|+.|++++|. +... +..+. .++.| +|++++|.....+|
T Consensus 476 ~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~---l~~~~~~~l~--~l~~L-~L~L~~N~l~~~~~ 540 (606)
T 3t6q_A 476 GRLEILVLSFCDLSSIDQHAFTSL-KMMNHVDLSHNR---LTSSSIEALS--HLKGI-YLNLASNHISIILP 540 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTC-TTCCEEECCSSC---CCGGGGGGGT--TCCSC-EEECCSSCCCCCCG
T ss_pred CCccEEECCCCccCccChhhhccc-cCCCEEECCCCc---cCcCChhHhC--ccccc-EEECcCCcccccCH
Confidence 44446666 22222 2 3444443 666666666665 3332 22222 35566 66666666655554
No 34
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=1.6e-21 Score=192.19 Aligned_cols=263 Identities=15% Similarity=0.049 Sum_probs=200.8
Q ss_pred CCccCCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC--CCccccCC
Q 016966 83 GSTIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI--LPSSLGLL 160 (379)
Q Consensus 83 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--lp~~i~~l 160 (379)
...+++++.|++.++.+..++.+..+++|+.|.+.+|.+ ..+| . + .+++|++|++++|. .+..+..+
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l--------~~lp-~-~-~l~~L~~L~l~~n~~~~~~~~~~l 349 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL--------KQFP-T-L-DLPFLKSLTLTMNKGSISFKKVAL 349 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC--------SSCC-C-C-CCSSCCEEEEESCSSCEECCCCCC
T ss_pred cccCCCCCEEEecCccchhhhhccccccCCEEEcccccC--------cccc-c-C-CCCccceeeccCCcCccchhhccC
Confidence 456788999999999988888777888999999999765 3345 2 3 78899999999886 33356788
Q ss_pred CCCcEEEeecCCCCC----cccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEE
Q 016966 161 SNLRTLSLCSCGLPD----ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEEL 236 (379)
Q Consensus 161 ~~L~~L~l~~~~l~~----~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L 236 (379)
++|++|++++|.+.. +..+..+++|++|++++|.+..+|..+..+++|++|++++|......+...++.+++|+.|
T Consensus 350 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 429 (606)
T 3vq2_A 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL 429 (606)
T ss_dssp TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEE
T ss_pred CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEE
Confidence 899999999988765 4667788899999999998888888888889999999988776666553447888899999
Q ss_pred EecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCC--CCccc-cccCCcEEEEEeeccccc---Ccccccce
Q 016966 237 YIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSS--LPRGL-LLEKLERYSIYIRRYFSR---KTGIWCRQ 310 (379)
Q Consensus 237 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~-~~~~L~~L~l~~~~~~~~---~~~~~~~~ 310 (379)
++++|.+... .+..++.+++|+.|++++|.+.. +|..+ .+++|+.|+++.+..... .+..+++.
T Consensus 430 ~l~~n~l~~~----------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 499 (606)
T 3vq2_A 430 DISYTNTKID----------FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL 499 (606)
T ss_dssp ECTTSCCEEC----------CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred ECcCCCCCcc----------chhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccC
Confidence 9998887654 35667888888999988888774 55555 678888888865544322 23344556
Q ss_pred EEEEe-CCccc--chHHHHHHhcccceeeccccccccccccccccccccCC-CCcEEEecCCCCcc
Q 016966 311 FRVEL-NNKIC--LKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSS-HLKRLRLEGSDLAL 372 (379)
Q Consensus 311 ~~L~l-~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~-~L~~L~l~~c~~l~ 372 (379)
..|++ .+... .|..+..+ ++|+.|++++|+ ++.+|..+.. ++ +|++|++++|+..-
T Consensus 500 ~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~l~~N~---l~~~p~~~~~--l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 500 QLLNMSHNNLLFLDSSHYNQL-YSLSTLDCSFNR---IETSKGILQH--FPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp CEEECCSSCCSCEEGGGTTTC-TTCCEEECTTSC---CCCEESCGGG--SCTTCCEEECCSCCCCC
T ss_pred CEEECCCCcCCCcCHHHccCC-CcCCEEECCCCc---CcccCHhHhh--hcccCcEEEccCCCccc
Confidence 68888 33333 36666664 999999999998 8888887543 76 59999999988763
No 35
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=2.1e-21 Score=176.95 Aligned_cols=254 Identities=14% Similarity=0.142 Sum_probs=135.0
Q ss_pred CccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccccCCCCC
Q 016966 88 HFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGLLSNL 163 (379)
Q Consensus 88 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~l~~L 163 (379)
+++.++++++.+..+|... .++++.|++++|.+ ..+++..|.++++|++|++++|. .|..+..+++|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i--------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 104 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDI--------SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL 104 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCC--------CEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTC
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcC--------CccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCC
Confidence 4556666666555555422 34566666666432 23333345566666666666665 34556666666
Q ss_pred cEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccch-hhcCCCCCCEEeccCCCCCc--ccChhhhCCCCCCcEEEec
Q 016966 164 RTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPV-EVGELTWLKLLDLRDCCFLK--VIPPNILSKLSHLEELYIG 239 (379)
Q Consensus 164 ~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~--~~~~~~l~~l~~L~~L~l~ 239 (379)
++|++++|.+.. |..+. ++|++|++++|.+..+|. .+..+++|++|++++|.... ..+.. ++.+ +|+.|+++
T Consensus 105 ~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~l-~L~~L~l~ 180 (332)
T 2ft3_A 105 QKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA-FDGL-KLNYLRIS 180 (332)
T ss_dssp CEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTS-SCSC-CCSCCBCC
T ss_pred CEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCccc-ccCC-ccCEEECc
Confidence 666666666555 43333 566666666666665554 35566666666666654421 22222 3444 55666665
Q ss_pred CCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCc-cc-cccCCcEEEEEeeccccc---CcccccceEEEE
Q 016966 240 RESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPR-GL-LLEKLERYSIYIRRYFSR---KTGIWCRQFRVE 314 (379)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~ 314 (379)
+|.+...+ ..+. ++|+.|++++|.+..++. .+ .+++|+.|+++.+..... .+..+++...|+
T Consensus 181 ~n~l~~l~-----------~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 247 (332)
T 2ft3_A 181 EAKLTGIP-----------KDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELH 247 (332)
T ss_dssp SSBCSSCC-----------SSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEE
T ss_pred CCCCCccC-----------cccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEE
Confidence 55554421 1111 345555555555554332 22 345555555533322211 112223333455
Q ss_pred e--CCcccchHHHHHHhcccceeeccccccccccccccccccc-----cCCCCcEEEecCCCCc
Q 016966 315 L--NNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKV-----GSSHLKRLRLEGSDLA 371 (379)
Q Consensus 315 l--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~-----~~~~L~~L~l~~c~~l 371 (379)
+ +....+|.++..+ ++|+.|++++|. ++.++...+.. .++.|+.|++.+|+..
T Consensus 248 L~~N~l~~lp~~l~~l-~~L~~L~l~~N~---l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 248 LDNNKLSRVPAGLPDL-KLLQVVYLHTNN---ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CCSSCCCBCCTTGGGC-TTCCEEECCSSC---CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred CCCCcCeecChhhhcC-ccCCEEECCCCC---CCccChhHccccccccccccccceEeecCccc
Confidence 5 2233456666663 888888888887 66666543321 2567888888888866
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=2.2e-21 Score=190.74 Aligned_cols=254 Identities=13% Similarity=0.120 Sum_probs=170.4
Q ss_pred CCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccccCCCCCcEEEeecCCCCC-c-ccc
Q 016966 106 LECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGLLSNLRTLSLCSCGLPD-I-SFV 179 (379)
Q Consensus 106 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~l~~L~~L~l~~~~l~~-~-~~~ 179 (379)
..+.+++.+.+.+|. ...+|+.+|..+++|++|++++|. .|..++.+++|++|++++|.+.. + ..+
T Consensus 48 l~l~~l~~l~l~~~~--------l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 119 (597)
T 3oja_B 48 ITLNNQKIVTFKNST--------MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF 119 (597)
T ss_dssp GGGCCCSEEEESSCE--------ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred ccCCCceEEEeeCCC--------CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHH
Confidence 367889999999854 567888889999999999999998 55689999999999999999988 4 567
Q ss_pred cCcCCCcEEEeeCCcCcccchh-hcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccc---
Q 016966 180 GYLKKLEILCLRGSDIVKLPVE-VGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKN--- 255 (379)
Q Consensus 180 ~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~--- 255 (379)
+.+++|++|++++|.++.+|.. ++.+++|++|++++|......|.. ++.+++|++|++++|.+...+........
T Consensus 120 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~ 198 (597)
T 3oja_B 120 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT-FQATTSLQNLQLSSNRLTHVDLSLIPSLFHAN 198 (597)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT-TTTCTTCCEEECTTSCCSBCCGGGCTTCSEEE
T ss_pred cCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhh-hhcCCcCcEEECcCCCCCCcChhhhhhhhhhh
Confidence 9999999999999999999976 589999999999998766555544 79999999999999988764311100000
Q ss_pred ---cchHhhcCCC---------------------CCcEEEeeccCCCCCCccccccCCcEEEEEeeccccc---Cccccc
Q 016966 256 ---ASLEELKHLP---------------------NLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYFSR---KTGIWC 308 (379)
Q Consensus 256 ---~~~~~l~~l~---------------------~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~ 308 (379)
.....+...+ +|+.|++++|.++..+....+++|+.|+++.+..... .+..++
T Consensus 199 l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 278 (597)
T 3oja_B 199 VSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 278 (597)
T ss_dssp CCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred cccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCcc
Confidence 0000111122 3444444444444432222456666666644433211 222334
Q ss_pred ceEEEEe-C-CcccchHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCCccCC
Q 016966 309 RQFRVEL-N-NKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLALNP 374 (379)
Q Consensus 309 ~~~~L~l-~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 374 (379)
+...|.+ + ....+|..... +++|+.|++++|. +..+|..+. .+++|++|++++|+....+
T Consensus 279 ~L~~L~Ls~N~l~~l~~~~~~-l~~L~~L~Ls~N~---l~~i~~~~~--~l~~L~~L~L~~N~l~~~~ 340 (597)
T 3oja_B 279 RLERLYISNNRLVALNLYGQP-IPTLKVLDLSHNH---LLHVERNQP--QFDRLENLYLDHNSIVTLK 340 (597)
T ss_dssp SCCEEECTTSCCCEEECSSSC-CTTCCEEECCSSC---CCCCGGGHH--HHTTCSEEECCSSCCCCCC
T ss_pred CCCEEECCCCCCCCCCccccc-CCCCcEEECCCCC---CCccCcccc--cCCCCCEEECCCCCCCCcC
Confidence 4446666 2 22224443333 3667777777775 556665543 3677777777777765554
No 37
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=7.5e-21 Score=173.21 Aligned_cols=257 Identities=15% Similarity=0.156 Sum_probs=164.5
Q ss_pred ccCCccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccC
Q 016966 85 TIKHFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGL 159 (379)
Q Consensus 85 ~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~ 159 (379)
..+.++.|++++|.+..++. +..+++|++|++++|.+ ..+++..|..+++|++|++++|. +|..+.
T Consensus 50 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l--------~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~- 120 (330)
T 1xku_A 50 LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI--------SKISPGAFAPLVKLERLYLSKNQLKELPEKMP- 120 (330)
T ss_dssp CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC--------CCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC-
T ss_pred CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcC--------CeeCHHHhcCCCCCCEEECCCCcCCccChhhc-
Confidence 34688889999998876664 45888999999988654 33444456788899999998887 555443
Q ss_pred CCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCc---ccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCc
Q 016966 160 LSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIV---KLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLE 234 (379)
Q Consensus 160 l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~---~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 234 (379)
++|++|++++|.+.. +..+..+++|++|++++|.+. ..+..+..+++|++|++++|.. ..+|... .++|+
T Consensus 121 -~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l-~~l~~~~---~~~L~ 195 (330)
T 1xku_A 121 -KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQGL---PPSLT 195 (330)
T ss_dssp -TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC-CSCCSSC---CTTCS
T ss_pred -ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc-ccCCccc---cccCC
Confidence 678888888888777 345777888888888887765 3345677777888888877553 3455431 26777
Q ss_pred EEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCc-cc-cccCCcEEEEEeecccc--cCcccccce
Q 016966 235 ELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPR-GL-LLEKLERYSIYIRRYFS--RKTGIWCRQ 310 (379)
Q Consensus 235 ~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~--~~~~~~~~~ 310 (379)
+|++++|.+.... +..+..+++|+.|++++|.+..++. .+ .+++|+.|+++.+.... .....+++.
T Consensus 196 ~L~l~~n~l~~~~----------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L 265 (330)
T 1xku_A 196 ELHLDGNKITKVD----------AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYI 265 (330)
T ss_dssp EEECTTSCCCEEC----------TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSC
T ss_pred EEECCCCcCCccC----------HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCc
Confidence 7777777766532 4566677777777777777765543 23 56777777775444331 112223344
Q ss_pred EEEEe-CCccc-chHHHH------HHhcccceeeccccccccccc--cccccccccCCCCcEEEecCCC
Q 016966 311 FRVEL-NNKIC-LKDSLI------VQLQRIEDLELSELQEQDVDY--FRNELVKVGSSHLKRLRLEGSD 369 (379)
Q Consensus 311 ~~L~l-~~~~~-~~~~~~------~~~~~L~~L~l~~~~~~~l~~--~~~~~~~~~~~~L~~L~l~~c~ 369 (379)
..|++ ++... ++.... ..++.|+.|++.+|+ +.. ++...+ ..++.|+.+++++|.
T Consensus 266 ~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~---~~~~~i~~~~f-~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 266 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP---VQYWEIQPSTF-RCVYVRAAVQLGNYK 330 (330)
T ss_dssp CEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS---SCGGGSCGGGG-TTCCCGGGEEC----
T ss_pred CEEECCCCcCCccChhhcCCcccccccccccceEeecCc---ccccccCcccc-ccccceeEEEecccC
Confidence 46666 33222 322111 013789999999998 443 222222 247889999998874
No 38
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.86 E-value=7.5e-21 Score=169.52 Aligned_cols=203 Identities=22% Similarity=0.319 Sum_probs=162.7
Q ss_pred cCcCCCCCCccCCccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC-
Q 016966 76 GCREWSDGSTIKHFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI- 152 (379)
Q Consensus 76 ~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~- 152 (379)
++...+. ..++++++|+++++.+..++. +..+++|+.|++++|.+ ..+++..|..+++|++|++++|.
T Consensus 22 ~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l--------~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 22 GLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL--------ARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC--------CEECTTTTTTCTTCCEEECCSCTT
T ss_pred CcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcc--------ceeCHhhcCCccCCCEEeCCCCCC
Confidence 3444443 456789999999999876664 45889999999999654 34545557889999999999985
Q ss_pred ----CCccccCCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCcccchh-hcCCCCCCEEeccCCCCCcccChh
Q 016966 153 ----LPSSLGLLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIVKLPVE-VGELTWLKLLDLRDCCFLKVIPPN 225 (379)
Q Consensus 153 ----lp~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~ 225 (379)
.|..+..+++|++|++++|.+.. +..+..+++|++|++++|.++.++.. +..+++|++|++++|.. ..++..
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~ 171 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI-SSVPER 171 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CEECTT
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcc-cccCHH
Confidence 36678889999999999999887 56788899999999999999988754 78899999999999764 455555
Q ss_pred hhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccc--cccCCcEEEEEeec
Q 016966 226 ILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGL--LLEKLERYSIYIRR 298 (379)
Q Consensus 226 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~ 298 (379)
.+..+++|+.|++++|.+... .+..+..+++|+.|++++|.++.++... .+++|+.|+++.+.
T Consensus 172 ~~~~l~~L~~L~l~~n~l~~~----------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 172 AFRGLHSLDRLLLHQNRVAHV----------HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEE----------CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred HhcCccccCEEECCCCccccc----------CHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 478899999999999988764 2677888999999999999999877653 68899999885444
No 39
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.86 E-value=1.1e-20 Score=192.95 Aligned_cols=284 Identities=19% Similarity=0.168 Sum_probs=196.0
Q ss_pred cCcCCCCCCccCCccEEEEeCCCCCCCC--CCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC-
Q 016966 76 GCREWSDGSTIKHFTSIVLHGIKPNLLP--EVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI- 152 (379)
Q Consensus 76 ~~~~~~~~~~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~- 152 (379)
.+...+. .++++++|++++|.+..++ .+..+++|+.|++++|.. ...+++..|.++++|++|++++|.
T Consensus 15 ~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~-------~~~i~~~~f~~L~~L~~L~Ls~N~l 85 (844)
T 3j0a_A 15 NLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT-------PLTIDKEAFRNLPNLRILDLGSSKI 85 (844)
T ss_dssp CSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCC-------CCEECTTTTSSCTTCCEEECTTCCC
T ss_pred CCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCC-------ccccCHHHhcCCCCCCEEECCCCcC
Confidence 4445555 6789999999999996554 355999999999999643 556766778999999999999998
Q ss_pred ---CCccccCCCCCcEEEeecCCCCC--ccc--ccCcCCCcEEEeeCCcCcccc--hhhcCCCCCCEEeccCCCCCcccC
Q 016966 153 ---LPSSLGLLSNLRTLSLCSCGLPD--ISF--VGYLKKLEILCLRGSDIVKLP--VEVGELTWLKLLDLRDCCFLKVIP 223 (379)
Q Consensus 153 ---lp~~i~~l~~L~~L~l~~~~l~~--~~~--~~~l~~L~~L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~~~~~~ 223 (379)
.|..++.+++|++|++++|.+.. +.. ++++++|++|++++|.+..++ ..++++++|++|++++|......+
T Consensus 86 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~ 165 (844)
T 3j0a_A 86 YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE 165 (844)
T ss_dssp CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH
Confidence 68889999999999999999886 444 889999999999999988653 578999999999999987655444
Q ss_pred hhhhCCC--CC------------------------------CcEEEecCCCCcChhhhhhccc-----------------
Q 016966 224 PNILSKL--SH------------------------------LEELYIGRESFVDWEEEVEGVK----------------- 254 (379)
Q Consensus 224 ~~~l~~l--~~------------------------------L~~L~l~~~~~~~~~~~~~~~~----------------- 254 (379)
.. ++.+ ++ |+.|++++|.+....+......
T Consensus 166 ~~-l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~ 244 (844)
T 3j0a_A 166 HE-LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG 244 (844)
T ss_dssp GG-GHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCB
T ss_pred HH-cccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccc
Confidence 43 3333 34 4555555554432211000000
Q ss_pred ---------ccchHhhcC--CCCCcEEEeeccCCCCCCc-cc-cccCCcEEEEEeeccccc---CcccccceEEEEe-CC
Q 016966 255 ---------NASLEELKH--LPNLTSLEVHVRDVSSLPR-GL-LLEKLERYSIYIRRYFSR---KTGIWCRQFRVEL-NN 317 (379)
Q Consensus 255 ---------~~~~~~l~~--l~~L~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~l-~~ 317 (379)
......+.. .++|+.|+++.|.+..++. .+ .+++|+.|+++.+..... .+..+++...|++ .+
T Consensus 245 ~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N 324 (844)
T 3j0a_A 245 AGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324 (844)
T ss_dssp CSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESC
T ss_pred ccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCC
Confidence 000111112 2578888888888775443 33 578888888876654422 2334455567888 33
Q ss_pred cc-cc-hHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCCccCC
Q 016966 318 KI-CL-KDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLALNP 374 (379)
Q Consensus 318 ~~-~~-~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 374 (379)
.. .+ +..+.. +++|+.|++++|. +..++...+ .++++|++|++++|.....+
T Consensus 325 ~l~~~~~~~~~~-l~~L~~L~L~~N~---i~~~~~~~~-~~l~~L~~L~Ls~N~l~~i~ 378 (844)
T 3j0a_A 325 LLGELYSSNFYG-LPKVAYIDLQKNH---IAIIQDQTF-KFLEKLQTLDLRDNALTTIH 378 (844)
T ss_dssp CCSCCCSCSCSS-CTTCCEEECCSCC---CCCCCSSCS-CSCCCCCEEEEETCCSCCCS
T ss_pred CCCccCHHHhcC-CCCCCEEECCCCC---CCccChhhh-cCCCCCCEEECCCCCCCccc
Confidence 33 23 444555 4888888888887 666665433 35888999999988876543
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.85 E-value=9.9e-21 Score=179.69 Aligned_cols=262 Identities=13% Similarity=0.102 Sum_probs=137.8
Q ss_pred ccCCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC-CCccccCCCCC
Q 016966 85 TIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI-LPSSLGLLSNL 163 (379)
Q Consensus 85 ~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-lp~~i~~l~~L 163 (379)
.++++++|++++|.+..+|.+..+++|+.|++++|.+.. ++ +..+++|++|++++|. ....++.+++|
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~--------~~---~~~l~~L~~L~Ls~N~l~~~~~~~l~~L 108 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITT--------LD---LSQNTNLTYLACDSNKLTNLDVTPLTKL 108 (457)
T ss_dssp HHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSC--------CC---CTTCTTCSEEECCSSCCSCCCCTTCTTC
T ss_pred HcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCe--------Ec---cccCCCCCEEECcCCCCceeecCCCCcC
Confidence 345556666666655555544455566666666544322 22 3455556666665555 10125555555
Q ss_pred cEEEeecCCCCCcccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCC
Q 016966 164 RTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESF 243 (379)
Q Consensus 164 ~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 243 (379)
++|++++|.++..+ ++.+++|++|++++|.++.++ ++.+++|++|++++|...+.++ ++.+++|+.|++++|.+
T Consensus 109 ~~L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l 182 (457)
T 3bz5_A 109 TYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKI 182 (457)
T ss_dssp CEEECCSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCC
T ss_pred CEEECCCCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCcc
Confidence 66666555555521 455555555555555555543 4455555555555544343332 34444555555554444
Q ss_pred cChhhhhhc------------ccccchHhhcCCCCCcEEEeeccCCCCCCccccccCCcEEEEEeecccccCcccccceE
Q 016966 244 VDWEEEVEG------------VKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYFSRKTGIWCRQF 311 (379)
Q Consensus 244 ~~~~~~~~~------------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 311 (379)
...+ ... ..... .++.+++|+.|++++|.++.+| ...+++|+.|+++.+.........+++..
T Consensus 183 ~~l~--l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N~l~~~~~~~l~~L~ 257 (457)
T 3bz5_A 183 TELD--VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNPLTELDVSTLSKLT 257 (457)
T ss_dssp CCCC--CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCCCTTCTTCC
T ss_pred ceec--cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccccC-ccccCCCCEEEeeCCcCCCcCHHHCCCCC
Confidence 3321 000 00001 3566777888888877777766 22677788887765555443333444444
Q ss_pred EEEe-----------CCcc--cchHHHHHHhcccceeecccccccccccccccc------ccccCCCCcEEEecCCCCcc
Q 016966 312 RVEL-----------NNKI--CLKDSLIVQLQRIEDLELSELQEQDVDYFRNEL------VKVGSSHLKRLRLEGSDLAL 372 (379)
Q Consensus 312 ~L~l-----------~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~------~~~~~~~L~~L~l~~c~~l~ 372 (379)
.|.+ .+.. .+| ... +++|+.|++++|. .+..++... ...++++|++|++++|....
T Consensus 258 ~L~l~~n~L~~L~l~~n~~~~~~~--~~~-l~~L~~L~Ls~n~--~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~ 332 (457)
T 3bz5_A 258 TLHCIQTDLLEIDLTHNTQLIYFQ--AEG-CRKIKELDVTHNT--QLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE 332 (457)
T ss_dssp EEECTTCCCSCCCCTTCTTCCEEE--CTT-CTTCCCCCCTTCT--TCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC
T ss_pred EEeccCCCCCEEECCCCccCCccc--ccc-cccCCEEECCCCc--ccceeccCCCcceEechhhcccCCEEECCCCcccc
Confidence 3332 1111 122 223 4788888888887 555555321 12246777888887777665
Q ss_pred C
Q 016966 373 N 373 (379)
Q Consensus 373 ~ 373 (379)
.
T Consensus 333 l 333 (457)
T 3bz5_A 333 L 333 (457)
T ss_dssp C
T ss_pred c
Confidence 4
No 41
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.85 E-value=1.1e-20 Score=183.96 Aligned_cols=180 Identities=19% Similarity=0.151 Sum_probs=140.1
Q ss_pred EEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccccCCCCCcEEE
Q 016966 92 IVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGLLSNLRTLS 167 (379)
Q Consensus 92 L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~l~~L~~L~ 167 (379)
.+.+++.+..+|... .++|++|++++|.+ ..+++..|.++++|++|++++|. .|..+..+++|++|+
T Consensus 10 c~~~~~~l~~ip~~~-~~~L~~L~Ls~n~l--------~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 80 (549)
T 2z81_A 10 CDGRSRSFTSIPSGL-TAAMKSLDLSFNKI--------TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80 (549)
T ss_dssp EECTTSCCSSCCSCC-CTTCCEEECCSSCC--------CEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred EECCCCccccccccC-CCCccEEECcCCcc--------CccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence 456667777788643 37899999999764 34444557899999999999998 567899999999999
Q ss_pred eecCCCCC-c-ccccCcCCCcEEEeeCCcCcc--cchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCC
Q 016966 168 LCSCGLPD-I-SFVGYLKKLEILCLRGSDIVK--LPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESF 243 (379)
Q Consensus 168 l~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 243 (379)
+++|.+.. + ..++.+++|++|++++|.++. .|..++++++|++|++++|...+.+|...++.+++|++|++++|.+
T Consensus 81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence 99999998 5 459999999999999999984 4668999999999999998877888765589999999999999998
Q ss_pred cChhhhhhcc-------------cccchHh-hcCCCCCcEEEeeccCCCCC
Q 016966 244 VDWEEEVEGV-------------KNASLEE-LKHLPNLTSLEVHVRDVSSL 280 (379)
Q Consensus 244 ~~~~~~~~~~-------------~~~~~~~-l~~l~~L~~L~l~~~~~~~~ 280 (379)
.+..+...+. ....+.. ++.+++|+.|++++|.+..+
T Consensus 161 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 161 RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp CEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred cccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccc
Confidence 7643221110 0111222 24567888888888777653
No 42
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.85 E-value=3e-20 Score=181.44 Aligned_cols=110 Identities=14% Similarity=0.109 Sum_probs=85.2
Q ss_pred CcCCCCCCccCCccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC--
Q 016966 77 CREWSDGSTIKHFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI-- 152 (379)
Q Consensus 77 ~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-- 152 (379)
++..+. ..++++++|++++|.+..++. +..+++|++|++++|.+ ..+++..|.++++|++|++++|.
T Consensus 43 L~~ip~-~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l--------~~~~~~~~~~l~~L~~L~Ls~N~l~ 113 (562)
T 3a79_B 43 LTHVPK-DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRI--------RSLDFHVFLFNQDLEYLDVSHNRLQ 113 (562)
T ss_dssp CCSCCT-TSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCC--------CEECTTTTTTCTTCCEEECTTSCCC
T ss_pred CccCCC-CCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCC--------CcCCHHHhCCCCCCCEEECCCCcCC
Confidence 334443 334789999999999877763 55889999999999654 34555567888999999999988
Q ss_pred -CCccccCCCCCcEEEeecCCCCC---cccccCcCCCcEEEeeCCcCcc
Q 016966 153 -LPSSLGLLSNLRTLSLCSCGLPD---ISFVGYLKKLEILCLRGSDIVK 197 (379)
Q Consensus 153 -lp~~i~~l~~L~~L~l~~~~l~~---~~~~~~l~~L~~L~l~~~~l~~ 197 (379)
+|.. .+++|++|++++|.+.. |..++++++|++|++++|.++.
T Consensus 114 ~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 114 NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc
Confidence 6655 78889999999998876 3678888888888888887653
No 43
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.84 E-value=4.6e-20 Score=178.43 Aligned_cols=127 Identities=19% Similarity=0.134 Sum_probs=87.5
Q ss_pred CCccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCC
Q 016966 87 KHFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLS 161 (379)
Q Consensus 87 ~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~ 161 (379)
+++++|++++|.+..++. +..+++|++|++++|.+ ..+++..|.++++|++|++++|. +|.. .++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l--------~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~ 90 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRI--------QYLDISVFKFNQELEYLDLSHNKLVKISCH--PTV 90 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCC--------CEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCcc--------CCcChHHhhcccCCCEEecCCCceeecCcc--ccC
Confidence 677888888877766653 44777788888877553 33444456777888888888777 5544 677
Q ss_pred CCcEEEeecCCCCC---cccccCcCCCcEEEeeCCcCcccchhhcCCCCC--CEEeccCCCC--CcccChh
Q 016966 162 NLRTLSLCSCGLPD---ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWL--KLLDLRDCCF--LKVIPPN 225 (379)
Q Consensus 162 ~L~~L~l~~~~l~~---~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L--~~L~l~~~~~--~~~~~~~ 225 (379)
+|++|++++|.+.. |..++++++|++|++++|.++. ..+..+++| ++|++++|.. ....|..
T Consensus 91 ~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~ 159 (520)
T 2z7x_B 91 NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEG 159 (520)
T ss_dssp CCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTT
T ss_pred CccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccccccccccccc
Confidence 78888888877664 4677777888888888777765 245566666 7888777665 4555544
No 44
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.84 E-value=3.5e-20 Score=166.88 Aligned_cols=233 Identities=20% Similarity=0.156 Sum_probs=156.3
Q ss_pred cEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC------CCccccCCCCC
Q 016966 90 TSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI------LPSSLGLLSNL 163 (379)
Q Consensus 90 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~------lp~~i~~l~~L 163 (379)
+.++.+++.+..+|... .++++.|++++|.+ ..++..+|.++++|++|++++|. .+..+..+++|
T Consensus 10 ~~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l--------~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L 80 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI-PSSATRLELESNKL--------QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSL 80 (306)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCCEEECCSSCC--------CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCC
T ss_pred CEEEcCCCCcccCCCCC-CCCCCEEECCCCcc--------CccCHhHhhccccCCEEECCCCccCcccCccccccccccc
Confidence 35666666666666522 36788888888553 34666667788888888888877 14556677888
Q ss_pred cEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccch--hhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecC
Q 016966 164 RTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPV--EVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGR 240 (379)
Q Consensus 164 ~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 240 (379)
++|++++|.+.. +..+..+++|++|++++|.++.++. .+..+++|++|++++|......+.. ++.+++|++|++++
T Consensus 81 ~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~ 159 (306)
T 2z66_A 81 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAG 159 (306)
T ss_dssp CEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTT-TTTCTTCCEEECTT
T ss_pred CEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhh-cccCcCCCEEECCC
Confidence 888888888777 6667788888888888887776664 6778888888888887655444443 67788888888888
Q ss_pred CCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCC-Cccc-cccCCcEEEEEeeccccc---CcccccceEEEEe
Q 016966 241 ESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSL-PRGL-LLEKLERYSIYIRRYFSR---KTGIWCRQFRVEL 315 (379)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~-~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~l 315 (379)
|.+.+.. .+..+..+++|+.|++++|.++.+ |..+ .+++|+.|+++.+..... .+..+++...|++
T Consensus 160 n~l~~~~---------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 230 (306)
T 2z66_A 160 NSFQENF---------LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 230 (306)
T ss_dssp CEEGGGE---------ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEEC
T ss_pred Ccccccc---------chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeEC
Confidence 7765421 355677778888888888887755 3334 577888888754443321 1223445557777
Q ss_pred -CCccc--chHHHHHHhcccceeeccccc
Q 016966 316 -NNKIC--LKDSLIVQLQRIEDLELSELQ 341 (379)
Q Consensus 316 -~~~~~--~~~~~~~~~~~L~~L~l~~~~ 341 (379)
++... .+..+..+.++|++|++++|+
T Consensus 231 ~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 231 SLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 33332 233333321377888888776
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=3.4e-20 Score=169.00 Aligned_cols=239 Identities=17% Similarity=0.250 Sum_probs=188.7
Q ss_pred CCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccccCCCCCcEEEeecCCCCC--cccccCc
Q 016966 109 PQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGLLSNLRTLSLCSCGLPD--ISFVGYL 182 (379)
Q Consensus 109 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~l~~L~~L~l~~~~l~~--~~~~~~l 182 (379)
.+++.+.+.++. ...+|..+ .++|++|++++|. .|..+..+++|++|++++|.++. +..++.+
T Consensus 33 c~l~~l~~~~~~--------l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 101 (332)
T 2ft3_A 33 CHLRVVQCSDLG--------LKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPL 101 (332)
T ss_dssp EETTEEECCSSC--------CSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTC
T ss_pred ccCCEEECCCCC--------ccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCc
Confidence 368999999855 44566554 3689999999998 45689999999999999999988 6789999
Q ss_pred CCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhc
Q 016966 183 KKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELK 262 (379)
Q Consensus 183 ~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~ 262 (379)
++|++|++++|.++.+|..+. ++|++|++++|... .++...++.+++|++|++++|.+.... ..+..+.
T Consensus 102 ~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~--------~~~~~~~ 170 (332)
T 2ft3_A 102 RKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSG--------FEPGAFD 170 (332)
T ss_dssp TTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGG--------SCTTSSC
T ss_pred CCCCEEECCCCcCCccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCC--------CCccccc
Confidence 999999999999999997665 89999999997754 556555899999999999999886422 1345666
Q ss_pred CCCCCcEEEeeccCCCCCCccccccCCcEEEEEeeccccc---CcccccceEEEEe-CCccc-ch-HHHHHHhcccceee
Q 016966 263 HLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYFSR---KTGIWCRQFRVEL-NNKIC-LK-DSLIVQLQRIEDLE 336 (379)
Q Consensus 263 ~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~l-~~~~~-~~-~~~~~~~~~L~~L~ 336 (379)
.+ +|+.|++++|.++.+|..+. ++|+.|+++.+..... .+...++...|++ .+... .+ ..+.. +++|+.|+
T Consensus 171 ~l-~L~~L~l~~n~l~~l~~~~~-~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~ 247 (332)
T 2ft3_A 171 GL-KLNYLRISEAKLTGIPKDLP-ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF-LPTLRELH 247 (332)
T ss_dssp SC-CCSCCBCCSSBCSSCCSSSC-SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG-CTTCCEEE
T ss_pred CC-ccCEEECcCCCCCccCcccc-CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC-CCCCCEEE
Confidence 66 89999999999999887654 7899999866554422 2334455557888 33333 43 34555 49999999
Q ss_pred ccccccccccccccccccccCCCCcEEEecCCCCccCCCCC
Q 016966 337 LSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLALNPAES 377 (379)
Q Consensus 337 l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 377 (379)
+++|. ++.+|..+.. +++|++|++++|+....++..
T Consensus 248 L~~N~---l~~lp~~l~~--l~~L~~L~l~~N~l~~~~~~~ 283 (332)
T 2ft3_A 248 LDNNK---LSRVPAGLPD--LKLLQVVYLHTNNITKVGVND 283 (332)
T ss_dssp CCSSC---CCBCCTTGGG--CTTCCEEECCSSCCCBCCTTS
T ss_pred CCCCc---CeecChhhhc--CccCCEEECCCCCCCccChhH
Confidence 99997 7888887654 999999999999998877653
No 46
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.83 E-value=9.8e-20 Score=178.02 Aligned_cols=270 Identities=13% Similarity=0.128 Sum_probs=180.3
Q ss_pred CCccCCccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCc-c
Q 016966 83 GSTIKHFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPS-S 156 (379)
Q Consensus 83 ~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~-~ 156 (379)
...++++++|++++|.+..++. +..+++|++|++++|. ...+++..|.++++|++|++++|. ++. .
T Consensus 48 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~--------l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~ 119 (570)
T 2z63_A 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP--------IQSLALGAFSGLSSLQKLVAVETNLASLENFP 119 (570)
T ss_dssp TTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC--------CCEECTTTTTTCTTCCEEECTTSCCCCSTTCS
T ss_pred hhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc--------CCccCHhhhcCccccccccccccccccCCCcc
Confidence 4567899999999998866654 4588999999999965 344566667889999999999987 443 5
Q ss_pred ccCCCCCcEEEeecCCCCC---cccccCcCCCcEEEeeCCcCcccc-hhhcCCCCC----CEEeccCCCCCcccCh----
Q 016966 157 LGLLSNLRTLSLCSCGLPD---ISFVGYLKKLEILCLRGSDIVKLP-VEVGELTWL----KLLDLRDCCFLKVIPP---- 224 (379)
Q Consensus 157 i~~l~~L~~L~l~~~~l~~---~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L----~~L~l~~~~~~~~~~~---- 224 (379)
++.+++|++|++++|.+.. |..++++++|++|++++|.++.++ ..++.+++| +++++++|......+.
T Consensus 120 ~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~ 199 (570)
T 2z63_A 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199 (570)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT
T ss_pred ccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhcc
Confidence 8889999999999998765 678889999999999999887654 345555555 5666665433221111
Q ss_pred ----------------------------------------------------------------------------hhhC
Q 016966 225 ----------------------------------------------------------------------------NILS 228 (379)
Q Consensus 225 ----------------------------------------------------------------------------~~l~ 228 (379)
..++
T Consensus 200 ~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~ 279 (570)
T 2z63_A 200 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN 279 (570)
T ss_dssp CEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTG
T ss_pred CcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhc
Confidence 1133
Q ss_pred CCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCcc---------------------cccc
Q 016966 229 KLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRG---------------------LLLE 287 (379)
Q Consensus 229 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~---------------------~~~~ 287 (379)
.+++|+.|++.+|.+.. ++..+..+ +|+.|++.+|.+..+|.. ..++
T Consensus 280 ~l~~L~~L~l~~~~l~~-----------l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 347 (570)
T 2z63_A 280 CLTNVSSFSLVSVTIER-----------VKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP 347 (570)
T ss_dssp GGTTCSEEEEESCEECS-----------CCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCT
T ss_pred CcCcccEEEecCccchh-----------hhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCC
Confidence 45566666666665543 33444444 566666666555544432 2456
Q ss_pred CCcEEEEEeecccc-----cCcccccceEEEEe-C-CcccchHHHHHHhcccceeeccccccccccccccccccccCCCC
Q 016966 288 KLERYSIYIRRYFS-----RKTGIWCRQFRVEL-N-NKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHL 360 (379)
Q Consensus 288 ~L~~L~l~~~~~~~-----~~~~~~~~~~~L~l-~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L 360 (379)
+|+.|+++.+.... .....+++...|++ . ....++..+.. +++|+.|++.+|. +...+.......+++|
T Consensus 348 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-l~~L~~L~l~~n~---l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSN---LKQMSEFSVFLSLRNL 423 (570)
T ss_dssp TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEET-CTTCCEEECTTSE---EESCTTSCTTTTCTTC
T ss_pred CCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccc-cCCCCEEEccCCc---cccccchhhhhcCCCC
Confidence 66666664433221 11223455558888 3 33345544555 4999999999998 5554331112358999
Q ss_pred cEEEecCCCCccCCCC
Q 016966 361 KRLRLEGSDLALNPAE 376 (379)
Q Consensus 361 ~~L~l~~c~~l~~~~~ 376 (379)
++|++++|.....++.
T Consensus 424 ~~L~l~~n~l~~~~~~ 439 (570)
T 2z63_A 424 IYLDISHTHTRVAFNG 439 (570)
T ss_dssp CEEECTTSCCEECCTT
T ss_pred CEEeCcCCcccccchh
Confidence 9999999998877664
No 47
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.83 E-value=4.7e-20 Score=188.24 Aligned_cols=271 Identities=16% Similarity=0.089 Sum_probs=188.2
Q ss_pred cEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC-----CCccccCCCCCc
Q 016966 90 TSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI-----LPSSLGLLSNLR 164 (379)
Q Consensus 90 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-----lp~~i~~l~~L~ 164 (379)
+..+.+++++..+|. ..++++.|++++|.+ ..+++..|.++++|++|++++|. .|..++++++|+
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i--------~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~ 76 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYI--------RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLR 76 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCC--------CEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcC--------CccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCC
Confidence 456777788888988 568999999999764 34444557999999999999995 378899999999
Q ss_pred EEEeecCCCCC--cccccCcCCCcEEEeeCCcCcc-cchh--hcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEec
Q 016966 165 TLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIVK-LPVE--VGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIG 239 (379)
Q Consensus 165 ~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~-lp~~--~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 239 (379)
+|++++|.+.. |..++++++|++|++++|.+.. +|.. +.++++|++|++++|......+...++++++|++|+++
T Consensus 77 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls 156 (844)
T 3j0a_A 77 ILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156 (844)
T ss_dssp EEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEE
T ss_pred EEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECC
Confidence 99999999988 7889999999999999999985 5654 88999999999999887666554448999999999999
Q ss_pred CCCCcChhhhhhccc----------------ccchHhhcCCC------CCcEEEeeccCCC-CCCccc------------
Q 016966 240 RESFVDWEEEVEGVK----------------NASLEELKHLP------NLTSLEVHVRDVS-SLPRGL------------ 284 (379)
Q Consensus 240 ~~~~~~~~~~~~~~~----------------~~~~~~l~~l~------~L~~L~l~~~~~~-~~~~~~------------ 284 (379)
+|.+....+...+.. ...+..++.++ +|+.|++++|.+. ..+..+
T Consensus 157 ~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L 236 (844)
T 3j0a_A 157 SNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSL 236 (844)
T ss_dssp SSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEE
T ss_pred CCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccce
Confidence 998876432111100 00111122222 2777777766544 222111
Q ss_pred ---------------------------cccCCcEEEEEeecccc---cCcccccceEEEEe-CCcc-cc-hHHHHHHhcc
Q 016966 285 ---------------------------LLEKLERYSIYIRRYFS---RKTGIWCRQFRVEL-NNKI-CL-KDSLIVQLQR 331 (379)
Q Consensus 285 ---------------------------~~~~L~~L~l~~~~~~~---~~~~~~~~~~~L~l-~~~~-~~-~~~~~~~~~~ 331 (379)
..++|+.|+++.+.... ..+..+++...|++ .+.. .. +..+.. +++
T Consensus 237 ~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-l~~ 315 (844)
T 3j0a_A 237 ILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYG-LDN 315 (844)
T ss_dssp ECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTT-CSS
T ss_pred ecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcC-CCC
Confidence 02456666664333221 12233445557777 3333 33 344555 488
Q ss_pred cceeeccccccccccccc-cccccccCCCCcEEEecCCCCccCCCC
Q 016966 332 IEDLELSELQEQDVDYFR-NELVKVGSSHLKRLRLEGSDLALNPAE 376 (379)
Q Consensus 332 L~~L~l~~~~~~~l~~~~-~~~~~~~~~~L~~L~l~~c~~l~~~~~ 376 (379)
|++|++++|. +..+. ..+. ++++|++|++++|....++++
T Consensus 316 L~~L~Ls~N~---l~~~~~~~~~--~l~~L~~L~L~~N~i~~~~~~ 356 (844)
T 3j0a_A 316 LQVLNLSYNL---LGELYSSNFY--GLPKVAYIDLQKNHIAIIQDQ 356 (844)
T ss_dssp CCEEEEESCC---CSCCCSCSCS--SCTTCCEEECCSCCCCCCCSS
T ss_pred CCEEECCCCC---CCccCHHHhc--CCCCCCEEECCCCCCCccChh
Confidence 8888888887 55553 3333 488899999988877666654
No 48
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.82 E-value=2.3e-20 Score=169.02 Aligned_cols=184 Identities=15% Similarity=0.138 Sum_probs=93.0
Q ss_pred cCCccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCCCCccccCCCCC
Q 016966 86 IKHFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMILPSSLGLLSNL 163 (379)
Q Consensus 86 ~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~lp~~i~~l~~L 163 (379)
.+++++|++++|.+..++. +..+++|+.|++++|.+. ..++ |..+++|++|++++|.+. .+...++|
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--------~~~~--~~~l~~L~~L~Ls~n~l~-~l~~~~~L 101 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY--------ETLD--LESLSTLRTLDLNNNYVQ-ELLVGPSI 101 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCE--------EEEE--ETTCTTCCEEECCSSEEE-EEEECTTC
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCC--------cchh--hhhcCCCCEEECcCCccc-cccCCCCc
Confidence 3456666666665544442 335556666666654432 1222 455566666666665411 11223556
Q ss_pred cEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccch-hhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCC
Q 016966 164 RTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPV-EVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRE 241 (379)
Q Consensus 164 ~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 241 (379)
++|++++|.+.. +.. .+++|++|++++|.++.++. .+..+++|++|++++|......+......+++|++|++++|
T Consensus 102 ~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 179 (317)
T 3o53_A 102 ETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (317)
T ss_dssp CEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred CEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC
Confidence 666666665555 221 24556666666665555433 44555566666666655444333332234556666666655
Q ss_pred CCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccc-cccCCcEEEE
Q 016966 242 SFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGL-LLEKLERYSI 294 (379)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l 294 (379)
.+... .....+++|+.|++++|.++.+|..+ .+++|+.|++
T Consensus 180 ~l~~~------------~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L 221 (317)
T 3o53_A 180 FIYDV------------KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISL 221 (317)
T ss_dssp CCCEE------------ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEEC
T ss_pred cCccc------------ccccccccCCEEECCCCcCCcchhhhcccCcccEEEC
Confidence 55432 12223555666666666555554443 4455555555
No 49
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.82 E-value=1.1e-19 Score=181.37 Aligned_cols=261 Identities=17% Similarity=0.112 Sum_probs=176.5
Q ss_pred ccCCccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCc-ccc
Q 016966 85 TIKHFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPS-SLG 158 (379)
Q Consensus 85 ~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~-~i~ 158 (379)
..+++++|++++|.+..++. +..+++|++|++++|.+ ..+++..|.++++|++|++++|. +|. .++
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l--------~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~ 94 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI--------SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA 94 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCC--------CCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCcc--------CccCHHHHhcccCcCEEECCCCccCccChhhhc
Confidence 34688888888888876664 44788888888888654 33445566788888888888887 554 578
Q ss_pred CCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCcccc-hhhcCCCCCCEEeccCCCCCcccChhhhC--CCCCC
Q 016966 159 LLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIVKLP-VEVGELTWLKLLDLRDCCFLKVIPPNILS--KLSHL 233 (379)
Q Consensus 159 ~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~--~l~~L 233 (379)
.+++|++|++++|.+.. +..++++++|++|++++|.++..+ ..++++++|++|++++|......+.. ++ .+++|
T Consensus 95 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~~~L 173 (680)
T 1ziw_A 95 FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE-LDIFANSSL 173 (680)
T ss_dssp TCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHH-HGGGTTCEE
T ss_pred cCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHH-hhccccccc
Confidence 88888888888888877 356888888888888888777543 45778888888888886654433332 32 45788
Q ss_pred cEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCC-C----CccccccCCcEEEEEeeccccc---Ccc
Q 016966 234 EELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSS-L----PRGLLLEKLERYSIYIRRYFSR---KTG 305 (379)
Q Consensus 234 ~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~----~~~~~~~~L~~L~l~~~~~~~~---~~~ 305 (379)
++|++++|.+.+.. +..+..+++|+.+.+..+.+.. . +..+..++|+.|+++.+..... .+.
T Consensus 174 ~~L~L~~n~l~~~~----------~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~ 243 (680)
T 1ziw_A 174 KKLELSSNQIKEFS----------PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243 (680)
T ss_dssp SEEECTTCCCCCBC----------TTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG
T ss_pred cEEECCCCcccccC----------hhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh
Confidence 88888888776643 5566777788888887665541 1 1111347788888854433221 122
Q ss_pred ccc--ceEEEEe-CCcc-cc-hHHHHHHhcccceeecccccccccccccc-ccccccCCCCcEEEecCCCC
Q 016966 306 IWC--RQFRVEL-NNKI-CL-KDSLIVQLQRIEDLELSELQEQDVDYFRN-ELVKVGSSHLKRLRLEGSDL 370 (379)
Q Consensus 306 ~~~--~~~~L~l-~~~~-~~-~~~~~~~~~~L~~L~l~~~~~~~l~~~~~-~~~~~~~~~L~~L~l~~c~~ 370 (379)
... +...|++ .+.. .. +..+..+ ++|++|++++|. +..++. .+. ++++|++|++++|..
T Consensus 244 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~---l~~~~~~~~~--~l~~L~~L~L~~~~~ 308 (680)
T 1ziw_A 244 GLKWTNLTMLDLSYNNLNVVGNDSFAWL-PQLEYFFLEYNN---IQHLFSHSLH--GLFNVRYLNLKRSFT 308 (680)
T ss_dssp GGGGSCCCEEECTTSCCCEECTTTTTTC-TTCCEEECCSCC---BSEECTTTTT--TCTTCCEEECTTCBC
T ss_pred ccCcCCCCEEECCCCCcCccCcccccCc-ccccEeeCCCCc---cCccChhhhc--CCCCccEEeccchhh
Confidence 222 2558888 3333 23 3455564 899999999987 444433 332 488999999987653
No 50
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.82 E-value=3.5e-19 Score=158.70 Aligned_cols=191 Identities=17% Similarity=0.227 Sum_probs=157.7
Q ss_pred cEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccccCCCCCcE
Q 016966 90 TSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGLLSNLRT 165 (379)
Q Consensus 90 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~l~~L~~ 165 (379)
+.++..++.+..+|.. ..++++.|++++|. ...+++..|..+++|++|++++|. .|..+..+++|++
T Consensus 14 ~~~~c~~~~l~~ip~~-~~~~l~~L~l~~n~--------i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 84 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVG-IPAASQRIFLHGNR--------ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQ 84 (285)
T ss_dssp CEEECCSSCCSSCCTT-CCTTCSEEECTTSC--------CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred eEEEcCcCCcccCCcC-CCCCceEEEeeCCc--------CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCE
Confidence 6777788878777752 35789999999965 445666668899999999999998 5778999999999
Q ss_pred EEeecCC-CCC--cccccCcCCCcEEEeeCCcCcccc-hhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCC
Q 016966 166 LSLCSCG-LPD--ISFVGYLKKLEILCLRGSDIVKLP-VEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRE 241 (379)
Q Consensus 166 L~l~~~~-l~~--~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 241 (379)
|++++|. +.. +..+..+++|++|++++|.++.++ ..+..+++|++|++++|... .++...++.+++|++|++++|
T Consensus 85 L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n 163 (285)
T 1ozn_A 85 LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGN 163 (285)
T ss_dssp EECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred EeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCHhHhccCCCccEEECCCC
Confidence 9999997 777 578899999999999999999774 56889999999999997754 555544789999999999999
Q ss_pred CCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCC-Cccc-cccCCcEEEEEeeccc
Q 016966 242 SFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSL-PRGL-LLEKLERYSIYIRRYF 300 (379)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~-~~~~L~~L~l~~~~~~ 300 (379)
.+.... ...+..+++|+.|++++|.+..+ |..+ .+++|+.|+++.+...
T Consensus 164 ~l~~~~----------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 214 (285)
T 1ozn_A 164 RISSVP----------ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214 (285)
T ss_dssp CCCEEC----------TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred cccccC----------HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCC
Confidence 988643 34588899999999999999855 5555 6899999999655443
No 51
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.82 E-value=1.9e-19 Score=179.83 Aligned_cols=195 Identities=21% Similarity=0.256 Sum_probs=92.6
Q ss_pred CccCCccEEEEeCCCCC------CCC-----CCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC
Q 016966 84 STIKHFTSIVLHGIKPN------LLP-----EVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI 152 (379)
Q Consensus 84 ~~~~~l~~L~l~~~~~~------~~~-----~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 152 (379)
..++++++|++.++... .+| .+..+++|+.|++++|.+ ..+++..|..+++|++|++++|.
T Consensus 293 ~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l--------~~~~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 293 HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI--------PGIKSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp TTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCB--------CCCCTTTTTTCTTCCEEECTTCB
T ss_pred cCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCcc--------CCCChhHhccccCCcEEECCCCc
Confidence 45566666666654321 222 233566666666666543 22344445566666666666553
Q ss_pred -----CC-cccc--CCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCc-ccc-hhhcCCCCCCEEeccCCCCCc
Q 016966 153 -----LP-SSLG--LLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIV-KLP-VEVGELTWLKLLDLRDCCFLK 220 (379)
Q Consensus 153 -----lp-~~i~--~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~-~lp-~~~~~l~~L~~L~l~~~~~~~ 220 (379)
++ ..+. ....|++|++++|.+.. +..+..+++|++|++++|.+. .+| ..+..+++|++|++++|....
T Consensus 365 ~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 444 (680)
T 1ziw_A 365 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ 444 (680)
T ss_dssp SCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEE
T ss_pred hhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcce
Confidence 11 1111 11345555555555554 344555555555555555554 233 345555555555555544322
Q ss_pred ccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccc--cccCCcEEEEE
Q 016966 221 VIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGL--LLEKLERYSIY 295 (379)
Q Consensus 221 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~ 295 (379)
..+.. +..+++|+.|++.+|.+.... ..+..++.+++|+.|++++|.++.++... .+++|+.|+++
T Consensus 445 ~~~~~-~~~~~~L~~L~l~~n~l~~~~--------~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls 512 (680)
T 1ziw_A 445 LTRNS-FALVPSLQRLMLRRVALKNVD--------SSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQ 512 (680)
T ss_dssp CCTTT-TTTCTTCCEEECTTSCCBCTT--------CSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eChhh-hhcCcccccchhccccccccc--------cCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCC
Confidence 22222 444555555555544443211 12334444445555555555444443322 34445554443
No 52
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=3e-20 Score=177.93 Aligned_cols=232 Identities=14% Similarity=0.159 Sum_probs=135.2
Q ss_pred ccCCccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCCCCccccCCCC
Q 016966 85 TIKHFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMILPSSLGLLSN 162 (379)
Q Consensus 85 ~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~lp~~i~~l~~ 162 (379)
.++++++|++++|.+..+++ +..+++|+.|++++|.+.+ .++ |..+++|++|++++|.+. .+...++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--------~~~--l~~l~~L~~L~Ls~N~l~-~l~~~~~ 100 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--------TLD--LESLSTLRTLDLNNNYVQ-ELLVGPS 100 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEE--------EEE--CTTCTTCCEEECCSSEEE-EEEECTT
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCC--------Ccc--cccCCCCCEEEecCCcCC-CCCCCCC
Confidence 34467777777777755542 3467777777777755421 222 566777777777777511 1222367
Q ss_pred CcEEEeecCCCCC-cccccCcCCCcEEEeeCCcCccc-chhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecC
Q 016966 163 LRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKL-PVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGR 240 (379)
Q Consensus 163 L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 240 (379)
|++|++++|.+.. +.. .+++|++|++++|.++.+ |..++.+++|++|++++|......|....+.+++|+.|++++
T Consensus 101 L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~ 178 (487)
T 3oja_A 101 IETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (487)
T ss_dssp CCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred cCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC
Confidence 7777777777766 332 346677777777777655 335666777777777776665555555333667777777777
Q ss_pred CCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccc-cccCCcEEEEEeecccccCcccccceEEEEeCCcc
Q 016966 241 ESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGL-LLEKLERYSIYIRRYFSRKTGIWCRQFRVELNNKI 319 (379)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~l~~~~ 319 (379)
|.+.+. +....+++|+.|++++|.++.+|..+ .+++|+.|+++.+...
T Consensus 179 N~l~~~------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~------------------- 227 (487)
T 3oja_A 179 NFIYDV------------KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV------------------- 227 (487)
T ss_dssp SCCCEE------------ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-------------------
T ss_pred Cccccc------------cccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc-------------------
Confidence 766642 22334667777777777777665554 4566666666333222
Q ss_pred cchHHHHHHhcccceeecccccccccc--ccccccccccCCCCcEEEec
Q 016966 320 CLKDSLIVQLQRIEDLELSELQEQDVD--YFRNELVKVGSSHLKRLRLE 366 (379)
Q Consensus 320 ~~~~~~~~~~~~L~~L~l~~~~~~~l~--~~~~~~~~~~~~~L~~L~l~ 366 (379)
.+|..+.. +++|+.|++++|+ +. .++..+. .++.|+.|++.
T Consensus 228 ~lp~~l~~-l~~L~~L~l~~N~---l~c~~~~~~~~--~l~~L~~l~~~ 270 (487)
T 3oja_A 228 LIEKALRF-SQNLEHFDLRGNG---FHCGTLRDFFS--KNQRVQTVAKQ 270 (487)
T ss_dssp EECTTCCC-CTTCCEEECTTCC---BCHHHHHHHHT--TCHHHHHHHHH
T ss_pred ccchhhcc-CCCCCEEEcCCCC---CcCcchHHHHH--hCCCCcEEecc
Confidence 12322322 3667777777766 33 3333222 35566655553
No 53
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.82 E-value=4.5e-19 Score=168.31 Aligned_cols=249 Identities=15% Similarity=0.109 Sum_probs=147.8
Q ss_pred CCccCCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccC
Q 016966 83 GSTIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGL 159 (379)
Q Consensus 83 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~ 159 (379)
...++++++|++++|.+..++ +..+++|+.|++++|.+.. ++ +..+++|++|++++|. +| ++.
T Consensus 60 l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~--------~~---~~~l~~L~~L~L~~N~l~~l~--~~~ 125 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTN--------LD---VTPLTKLTYLNCDTNKLTKLD--VSQ 125 (457)
T ss_dssp GGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSC--------CC---CTTCTTCCEEECCSSCCSCCC--CTT
T ss_pred hcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCce--------ee---cCCCCcCCEEECCCCcCCeec--CCC
Confidence 344555666666666555543 4455556666665544322 11 3445555555555554 22 444
Q ss_pred CCCCcEEEeecCCCCCc---------------------ccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCC
Q 016966 160 LSNLRTLSLCSCGLPDI---------------------SFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCF 218 (379)
Q Consensus 160 l~~L~~L~l~~~~l~~~---------------------~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~ 218 (379)
+++|++|++++|.++.. -.++.+++|++|++++|.++.+| +..+++|++|++++|..
T Consensus 126 l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l 203 (457)
T 3bz5_A 126 NPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNI 203 (457)
T ss_dssp CTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCC
T ss_pred CCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcC
Confidence 44444444444444331 13556667777777777777766 66777777777777654
Q ss_pred CcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccccccCCcEEEEEeec
Q 016966 219 LKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRR 298 (379)
Q Consensus 219 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 298 (379)
.. ++ ++.+++|+.|++++|.+.+ ++ ++.+++|+.|++++|.++.+|.. .+++|+.|++..+.
T Consensus 204 ~~-~~---l~~l~~L~~L~Ls~N~l~~-----------ip--~~~l~~L~~L~l~~N~l~~~~~~-~l~~L~~L~l~~n~ 265 (457)
T 3bz5_A 204 TK-LD---LNQNIQLTFLDCSSNKLTE-----------ID--VTPLTQLTYFDCSVNPLTELDVS-TLSKLTTLHCIQTD 265 (457)
T ss_dssp SC-CC---CTTCTTCSEEECCSSCCSC-----------CC--CTTCTTCSEEECCSSCCSCCCCT-TCTTCCEEECTTCC
T ss_pred Ce-ec---cccCCCCCEEECcCCcccc-----------cC--ccccCCCCEEEeeCCcCCCcCHH-HCCCCCEEeccCCC
Confidence 43 32 5777888888888887765 23 77889999999999999977633 46667666543222
Q ss_pred cccc------Cc-----ccccceEEEEeCCcc---cchH--------HHHHHhcccceeecccccccccccccccccccc
Q 016966 299 YFSR------KT-----GIWCRQFRVELNNKI---CLKD--------SLIVQLQRIEDLELSELQEQDVDYFRNELVKVG 356 (379)
Q Consensus 299 ~~~~------~~-----~~~~~~~~L~l~~~~---~~~~--------~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~ 356 (379)
.... .. ..+++...|++.++. .+|. .+.. .++|+.|++++|. ++.++ + ..
T Consensus 266 L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~-~~~L~~L~L~~N~---l~~l~--l--~~ 337 (457)
T 3bz5_A 266 LLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQ-NPKLVYLYLNNTE---LTELD--V--SH 337 (457)
T ss_dssp CSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTT-CTTCCEEECTTCC---CSCCC--C--TT
T ss_pred CCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhh-cccCCEEECCCCc---ccccc--c--cc
Confidence 1100 01 122334456662211 1111 0233 3788888888887 66653 3 35
Q ss_pred CCCCcEEEecCCCCccC
Q 016966 357 SSHLKRLRLEGSDLALN 373 (379)
Q Consensus 357 ~~~L~~L~l~~c~~l~~ 373 (379)
+++|+.|++++|.....
T Consensus 338 l~~L~~L~l~~N~l~~l 354 (457)
T 3bz5_A 338 NTKLKSLSCVNAHIQDF 354 (457)
T ss_dssp CTTCSEEECCSSCCCBC
T ss_pred CCcCcEEECCCCCCCCc
Confidence 99999999999987754
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.82 E-value=8.1e-20 Score=167.94 Aligned_cols=245 Identities=16% Similarity=0.198 Sum_probs=188.4
Q ss_pred cCcCCCCCCccCCccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC-
Q 016966 76 GCREWSDGSTIKHFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI- 152 (379)
Q Consensus 76 ~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~- 152 (379)
.++..+. ...+++++|++++|.+..++. +..+++|+.|++++|.+ ..+++..|.++++|++|++++|.
T Consensus 42 ~l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l--------~~~~~~~~~~l~~L~~L~Ls~n~l 112 (353)
T 2z80_A 42 SLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI--------NTIEEDSFSSLGSLEHLDLSYNYL 112 (353)
T ss_dssp TCSSCCT-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC--------CEECTTTTTTCTTCCEEECCSSCC
T ss_pred Ccccccc-cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCcc--------CccCHhhcCCCCCCCEEECCCCcC
Confidence 3444443 345689999999999977765 55899999999999754 44555667899999999999998
Q ss_pred --CCcc-ccCCCCCcEEEeecCCCCC-cc--cccCcCCCcEEEeeCC-cCcccc-hhhcCCCCCCEEeccCCCCCcccCh
Q 016966 153 --LPSS-LGLLSNLRTLSLCSCGLPD-IS--FVGYLKKLEILCLRGS-DIVKLP-VEVGELTWLKLLDLRDCCFLKVIPP 224 (379)
Q Consensus 153 --lp~~-i~~l~~L~~L~l~~~~l~~-~~--~~~~l~~L~~L~l~~~-~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~ 224 (379)
+|.. ++.+++|++|++++|.+.. +. .+..+++|++|++++| .+..++ ..+..+++|++|++++|......|.
T Consensus 113 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 192 (353)
T 2z80_A 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192 (353)
T ss_dssp SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH
Confidence 5654 8899999999999999988 54 6889999999999999 577765 5788999999999999887666666
Q ss_pred hhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccc-----cccCCcEEEEEeecc
Q 016966 225 NILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGL-----LLEKLERYSIYIRRY 299 (379)
Q Consensus 225 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-----~~~~L~~L~l~~~~~ 299 (379)
. ++.+++|++|++++|.+...+ ...+..+++|+.|++++|.++.++... ..+.++.+++.....
T Consensus 193 ~-l~~l~~L~~L~l~~n~l~~~~----------~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l 261 (353)
T 2z80_A 193 S-LKSIQNVSHLILHMKQHILLL----------EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI 261 (353)
T ss_dssp T-TTTCSEEEEEEEECSCSTTHH----------HHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBC
T ss_pred H-HhccccCCeecCCCCccccch----------hhhhhhcccccEEECCCCccccccccccccccccchhhccccccccc
Confidence 5 799999999999999987643 234456889999999999988654321 356677777754433
Q ss_pred ccc-------CcccccceEEEEe--CCcccchHHH-HHHhcccceeeccccc
Q 016966 300 FSR-------KTGIWCRQFRVEL--NNKICLKDSL-IVQLQRIEDLELSELQ 341 (379)
Q Consensus 300 ~~~-------~~~~~~~~~~L~l--~~~~~~~~~~-~~~~~~L~~L~l~~~~ 341 (379)
... .+..+++...|++ +....+|..+ .. +++|++|++++|+
T Consensus 262 ~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~-l~~L~~L~L~~N~ 312 (353)
T 2z80_A 262 TDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDR-LTSLQKIWLHTNP 312 (353)
T ss_dssp CHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSC
T ss_pred cCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhc-CCCCCEEEeeCCC
Confidence 211 1223445568888 4444577665 45 5999999999998
No 55
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.81 E-value=4.7e-21 Score=173.14 Aligned_cols=243 Identities=14% Similarity=0.108 Sum_probs=179.2
Q ss_pred cCCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhh------hCCCceeEEEecCCC----CCc
Q 016966 86 IKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFF------KSMIEVRVVNLTDMI----LPS 155 (379)
Q Consensus 86 ~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~------~~l~~L~~L~l~~~~----lp~ 155 (379)
.++++.+.+.+|.+ .+|... ...|+.|++++|.+.. ..++..++ ..+++|++|++++|. .|.
T Consensus 42 ~~~L~~l~l~~n~l-~~p~~~-~~~L~~L~L~~n~l~~------~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE-ADLGQF-TDIIKSLSLKRLTVRA------ARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEECTTHHHHCCTT-CCCHHH-HHHHHHCCCCEEEEEE------EECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred CCCceeEeeccccc-ccHHHH-HHHHhhcccccccccC------CCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 35677777778877 555422 1127788888765421 13444332 268999999999998 666
Q ss_pred cc--cCCCCCcEEEeecCCCCC-cccccCc-----CCCcEEEeeCCcCcccc-hhhcCCCCCCEEeccCCCCCccc--Ch
Q 016966 156 SL--GLLSNLRTLSLCSCGLPD-ISFVGYL-----KKLEILCLRGSDIVKLP-VEVGELTWLKLLDLRDCCFLKVI--PP 224 (379)
Q Consensus 156 ~i--~~l~~L~~L~l~~~~l~~-~~~~~~l-----~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~--~~ 224 (379)
.+ ..+++|++|++++|.+.. |..++.+ ++|++|++++|.+..++ ..++.+++|++|++++|...+.. +.
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 65 889999999999999888 7777776 89999999999999777 68889999999999998866542 32
Q ss_pred h-hhCCCCCCcEEEecCCCCcChhhhhhcccccch-HhhcCCCCCcEEEeeccCCCCCC-cc-c-cccCCcEEEEEeecc
Q 016966 225 N-ILSKLSHLEELYIGRESFVDWEEEVEGVKNASL-EELKHLPNLTSLEVHVRDVSSLP-RG-L-LLEKLERYSIYIRRY 299 (379)
Q Consensus 225 ~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~-~~-~-~~~~L~~L~l~~~~~ 299 (379)
. .++.+++|++|++++|.+...+ ..+ ..+..+++|+.|++++|.+...+ .. . .+++|+.|+++.+..
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~--------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l 265 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPS--------GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHH--------HHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCC
T ss_pred HHHhccCCCCCEEECCCCcCcchH--------HHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCcc
Confidence 3 1278999999999999987532 022 33467889999999999998644 22 2 578899998844433
Q ss_pred cccCcccccceEEEEeCCcccchHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCCcc
Q 016966 300 FSRKTGIWCRQFRVELNNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLAL 372 (379)
Q Consensus 300 ~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~ 372 (379)
. .+|..+ +++|++|++++|. ++.+|. +. .+++|++|++++|+...
T Consensus 266 ~-------------------~ip~~~---~~~L~~L~Ls~N~---l~~~p~-~~--~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 266 K-------------------QVPKGL---PAKLSVLDLSYNR---LDRNPS-PD--ELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp S-------------------SCCSSC---CSEEEEEECCSSC---CCSCCC-TT--TSCEEEEEECTTCTTTC
T ss_pred C-------------------hhhhhc---cCCceEEECCCCC---CCCChh-Hh--hCCCCCEEeccCCCCCC
Confidence 2 233323 3789999999998 777765 33 59999999999998764
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=2.3e-19 Score=169.82 Aligned_cols=202 Identities=20% Similarity=0.238 Sum_probs=160.1
Q ss_pred cCcCCCCCCccCCccEEEEeCCCCCCCC--CCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC-
Q 016966 76 GCREWSDGSTIKHFTSIVLHGIKPNLLP--EVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI- 152 (379)
Q Consensus 76 ~~~~~~~~~~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~- 152 (379)
.+...+. ...++++.|++++|.+..++ .+..+++|+.|++++|. ...++...|.++++|++|++++|.
T Consensus 54 ~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~--------i~~i~~~~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 54 NLREVPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH--------IRTIEIGAFNGLANLNTLELFDNRL 124 (440)
T ss_dssp CCSSCCS-CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC--------CCEECGGGGTTCSSCCEEECCSSCC
T ss_pred CcCcCCC-CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc--------CCccChhhccCCccCCEEECCCCcC
Confidence 3444443 44578999999999996665 35589999999999965 445666778899999999999998
Q ss_pred --CC-ccccCCCCCcEEEeecCCCCC-c-ccccCcCCCcEEEeeCC-cCcccch-hhcCCCCCCEEeccCCCCCcccChh
Q 016966 153 --LP-SSLGLLSNLRTLSLCSCGLPD-I-SFVGYLKKLEILCLRGS-DIVKLPV-EVGELTWLKLLDLRDCCFLKVIPPN 225 (379)
Q Consensus 153 --lp-~~i~~l~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~-~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~ 225 (379)
+| ..+..+++|++|++++|.+.. + ..+..+++|++|++++| .+..++. .+..+++|++|++++|.. ..+|.
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l-~~~~~- 202 (440)
T 3zyj_A 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL-REIPN- 202 (440)
T ss_dssp SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC-SSCCC-
T ss_pred CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC-ccccc-
Confidence 44 468899999999999999888 3 57888999999999985 6667765 578899999999999764 56664
Q ss_pred hhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCcc-c-cccCCcEEEEEeecc
Q 016966 226 ILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRG-L-LLEKLERYSIYIRRY 299 (379)
Q Consensus 226 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~ 299 (379)
+..+++|+.|++++|.+.... +..+..+++|+.|++++|.+..++.. + .+++|+.|+++.+..
T Consensus 203 -~~~l~~L~~L~Ls~N~l~~~~----------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 267 (440)
T 3zyj_A 203 -LTPLIKLDELDLSGNHLSAIR----------PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267 (440)
T ss_dssp -CTTCSSCCEEECTTSCCCEEC----------TTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCC
T ss_pred -cCCCcccCEEECCCCccCccC----------hhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCC
Confidence 688999999999999887653 56788889999999999988866543 3 678899998855443
No 57
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=8.1e-19 Score=171.74 Aligned_cols=234 Identities=19% Similarity=0.161 Sum_probs=179.7
Q ss_pred cCCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCCC
Q 016966 86 IKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLSN 162 (379)
Q Consensus 86 ~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~~ 162 (379)
.++++.|++++|.+..+|. .+++|++|++++|.+. .+|. .+++|++|++++|. +|. .+.+
T Consensus 60 ~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~--------~lp~----~l~~L~~L~Ls~N~l~~l~~---~l~~ 122 (622)
T 3g06_A 60 PAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLT--------SLPV----LPPGLLELSIFSNPLTHLPA---LPSG 122 (622)
T ss_dssp CTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCS--------CCCC----CCTTCCEEEECSCCCCCCCC---CCTT
T ss_pred CCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCC--------cCCC----CCCCCCEEECcCCcCCCCCC---CCCC
Confidence 4789999999999888887 6789999999997653 3444 57899999999998 554 6788
Q ss_pred CcEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCC
Q 016966 163 LRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRE 241 (379)
Q Consensus 163 L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 241 (379)
|++|++++|.++. |.. +++|++|++++|.++.+|. .+++|+.|++++|.. ..+| ..+++|+.|++++|
T Consensus 123 L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l-~~l~----~~~~~L~~L~Ls~N 191 (622)
T 3g06_A 123 LCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQL-TSLP----MLPSGLQELSVSDN 191 (622)
T ss_dssp CCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCC-SCCC----CCCTTCCEEECCSS
T ss_pred cCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCC-CCCc----ccCCCCcEEECCCC
Confidence 9999999999888 543 4889999999999988875 356789999988664 4455 35688999999999
Q ss_pred CCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccccccCCcEEEEEeecccccCcccccceEEEEe-C-Ccc
Q 016966 242 SFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYFSRKTGIWCRQFRVEL-N-NKI 319 (379)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~l-~-~~~ 319 (379)
.+...+ . .+++|+.|++++|.++.+|.. +++|+.|+++.+..... ...+++...|++ . ...
T Consensus 192 ~l~~l~-----------~---~~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N~L~~l-p~~l~~L~~L~Ls~N~L~ 254 (622)
T 3g06_A 192 QLASLP-----------T---LPSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSL-PVLPSELKELMVSGNRLT 254 (622)
T ss_dssp CCSCCC-----------C---CCTTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCC-CCCCTTCCEEECCSSCCS
T ss_pred CCCCCC-----------C---ccchhhEEECcCCcccccCCC--CCCCCEEEccCCccCcC-CCCCCcCcEEECCCCCCC
Confidence 887632 1 246899999999988888764 58899998865544421 133455558888 3 333
Q ss_pred cchHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCCccC
Q 016966 320 CLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLALN 373 (379)
Q Consensus 320 ~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 373 (379)
.+|. . +++|+.|++++|. ++.+|..+.. +++|+.|++++|+....
T Consensus 255 ~lp~---~-~~~L~~L~Ls~N~---L~~lp~~l~~--l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 255 SLPM---L-PSGLLSLSVYRNQ---LTRLPESLIH--LSSETTVNLEGNPLSER 299 (622)
T ss_dssp CCCC---C-CTTCCEEECCSSC---CCSCCGGGGG--SCTTCEEECCSCCCCHH
T ss_pred cCCc---c-cccCcEEeCCCCC---CCcCCHHHhh--ccccCEEEecCCCCCCc
Confidence 3555 2 5899999999997 7788877654 99999999999997653
No 58
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.81 E-value=9.5e-19 Score=157.58 Aligned_cols=191 Identities=20% Similarity=0.251 Sum_probs=162.9
Q ss_pred CccCCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC--CCccccCCC
Q 016966 84 STIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI--LPSSLGLLS 161 (379)
Q Consensus 84 ~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--lp~~i~~l~ 161 (379)
..++++++|+++++.+..++.+..+++|+.|++++|.+.+ +++ +..+++|++|++++|. ....+..++
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~--------~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~ 107 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITD--------LAP--LKNLTKITELELSGNPLKNVSAIAGLQ 107 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC--------CGG--GTTCCSCCEEECCSCCCSCCGGGTTCT
T ss_pred HHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCC--------Chh--HccCCCCCEEEccCCcCCCchhhcCCC
Confidence 4578999999999999888887799999999999976543 344 6889999999999998 334789999
Q ss_pred CCcEEEeecCCCCCcccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCC
Q 016966 162 NLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRE 241 (379)
Q Consensus 162 ~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 241 (379)
+|++|++++|.+...+.+..+++|++|++++|.++.++. +..+++|++|++++|... .++. +..+++|+.|++++|
T Consensus 108 ~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 108 SIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVS-DLTP--LANLSKLTTLKADDN 183 (308)
T ss_dssp TCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSS
T ss_pred CCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCC-CChh--hcCCCCCCEEECCCC
Confidence 999999999999885558999999999999999998885 889999999999997654 4554 789999999999999
Q ss_pred CCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccccccCCcEEEEEeeccc
Q 016966 242 SFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYF 300 (379)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 300 (379)
.+.+.. .+..+++|+.|++++|.+..++....+++|+.|+++.+...
T Consensus 184 ~l~~~~------------~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 184 KISDIS------------PLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCCCCG------------GGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEE
T ss_pred ccCcCh------------hhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeee
Confidence 988643 37889999999999999998875447899999999776654
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=6.8e-19 Score=167.20 Aligned_cols=223 Identities=20% Similarity=0.224 Sum_probs=176.3
Q ss_pred ccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccccCCCCCcEEEeecCCCCC--cccccCcCC
Q 016966 111 LELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGLLSNLRTLSLCSCGLPD--ISFVGYLKK 184 (379)
Q Consensus 111 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~ 184 (379)
.+.+...++. ...+|..+ .+++++|++++|. .|..+..+++|++|++++|.+.. +..+..+++
T Consensus 56 ~~~v~c~~~~--------l~~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 124 (452)
T 3zyi_A 56 FSKVVCTRRG--------LSEVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLAS 124 (452)
T ss_dssp SCEEECCSSC--------CSSCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred CcEEEECCCC--------cCccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCccc
Confidence 4566666633 45566654 3689999999998 57789999999999999999988 578999999
Q ss_pred CcEEEeeCCcCcccchh-hcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcC
Q 016966 185 LEILCLRGSDIVKLPVE-VGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKH 263 (379)
Q Consensus 185 L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~ 263 (379)
|++|++++|.++.+|.. +..+++|++|++++|.. ..++...+..+++|+.|++++|.....- ....+..
T Consensus 125 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~~~~l~~i---------~~~~~~~ 194 (452)
T 3zyi_A 125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLMRLDLGELKKLEYI---------SEGAFEG 194 (452)
T ss_dssp CCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCC-CEECTTTTTTCTTCCEEECCCCTTCCEE---------CTTTTTT
T ss_pred CCEEECCCCcCCccChhhhcccCCCCEEECCCCCc-ceeCHhHHhcCCcccEEeCCCCCCcccc---------ChhhccC
Confidence 99999999999988865 78899999999999774 5666655899999999999985443321 2446888
Q ss_pred CCCCcEEEeeccCCCCCCccccccCCcEEEEEeecccccCcccccceEEEEeCCcccchHHHHHHhcccceeeccccccc
Q 016966 264 LPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYFSRKTGIWCRQFRVELNNKICLKDSLIVQLQRIEDLELSELQEQ 343 (379)
Q Consensus 264 l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 343 (379)
+++|+.|++++|.++.+|....+++|+.|+++.+... ...+..+.. +++|+.|++++|.
T Consensus 195 l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~------------------~~~~~~~~~-l~~L~~L~L~~n~-- 253 (452)
T 3zyi_A 195 LFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFP------------------EIRPGSFHG-LSSLKKLWVMNSQ-- 253 (452)
T ss_dssp CTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCS------------------EECGGGGTT-CTTCCEEECTTSC--
T ss_pred CCCCCEEECCCCcccccccccccccccEEECcCCcCc------------------ccCcccccC-ccCCCEEEeCCCc--
Confidence 9999999999999998887557899999988544333 112444555 4999999999998
Q ss_pred cccccccccccccCCCCcEEEecCCCCccCCCCC
Q 016966 344 DVDYFRNELVKVGSSHLKRLRLEGSDLALNPAES 377 (379)
Q Consensus 344 ~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 377 (379)
++.++...+ .++++|++|++++|.....+++.
T Consensus 254 -l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~ 285 (452)
T 3zyi_A 254 -VSLIERNAF-DGLASLVELNLAHNNLSSLPHDL 285 (452)
T ss_dssp -CCEECTTTT-TTCTTCCEEECCSSCCSCCCTTS
T ss_pred -CceECHHHh-cCCCCCCEEECCCCcCCccChHH
Confidence 666654433 35899999999999988877654
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.80 E-value=8.8e-21 Score=171.71 Aligned_cols=215 Identities=15% Similarity=0.138 Sum_probs=118.0
Q ss_pred CCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCCCCcEEEeecCCCCCcccccCcC
Q 016966 107 ECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLSNLRTLSLCSCGLPDISFVGYLK 183 (379)
Q Consensus 107 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~l~~~~~~~~l~ 183 (379)
.+++|+.|++++|.+ ..+++..|..+++|++|++++|. .+ .+..+++|++|++++|.++.. ...+
T Consensus 32 ~~~~L~~L~L~~n~l--------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~l~~L~~L~Ls~n~l~~l---~~~~ 99 (317)
T 3o53_A 32 SAWNVKELDLSGNPL--------SQISAADLAPFTKLELLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQEL---LVGP 99 (317)
T ss_dssp TGGGCSEEECTTSCC--------CCCCHHHHTTCTTCCEEECTTSCCEEEE-EETTCTTCCEEECCSSEEEEE---EECT
T ss_pred cCCCCCEEECcCCcc--------CcCCHHHhhCCCcCCEEECCCCcCCcch-hhhhcCCCCEEECcCCccccc---cCCC
Confidence 345666666666543 23444445666666666666666 22 266666666666666665441 1225
Q ss_pred CCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhh-c
Q 016966 184 KLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEEL-K 262 (379)
Q Consensus 184 ~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l-~ 262 (379)
+|++|++++|.++.++. ..+++|++|++++|......+.. ++.+++|+.|++++|.+.... +..+ .
T Consensus 100 ~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~----------~~~~~~ 166 (317)
T 3o53_A 100 SIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEIDTVN----------FAELAA 166 (317)
T ss_dssp TCCEEECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBC-TGGGSSEEEEECTTSCCCEEE----------GGGGGG
T ss_pred CcCEEECCCCccCCcCc--cccCCCCEEECCCCCCCCccchh-hhccCCCCEEECCCCCCCccc----------HHHHhh
Confidence 66666666666665553 23566666666665543333322 556666666666666665432 2233 3
Q ss_pred CCCCCcEEEeeccCCCCCCccccccCCcEEEEEeecccccCcccccceEEEEeCCcccchHHHHHHhcccceeecccccc
Q 016966 263 HLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYFSRKTGIWCRQFRVELNNKICLKDSLIVQLQRIEDLELSELQE 342 (379)
Q Consensus 263 ~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 342 (379)
.+++|+.|++++|.++.++....+++|+.|+++.+... .++..+.. +++|+.|++++|.
T Consensus 167 ~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~-------------------~l~~~~~~-l~~L~~L~L~~N~- 225 (317)
T 3o53_A 167 SSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA-------------------FMGPEFQS-AAGVTWISLRNNK- 225 (317)
T ss_dssp GTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCC-------------------EECGGGGG-GTTCSEEECTTSC-
T ss_pred ccCcCCEEECCCCcCcccccccccccCCEEECCCCcCC-------------------cchhhhcc-cCcccEEECcCCc-
Confidence 45666666666666665554445666666666433322 12222333 2556666666654
Q ss_pred ccccccccccccccCCCCcEEEecCCCCc
Q 016966 343 QDVDYFRNELVKVGSSHLKRLRLEGSDLA 371 (379)
Q Consensus 343 ~~l~~~~~~~~~~~~~~L~~L~l~~c~~l 371 (379)
++.++..+. .+++|+.|++++|+..
T Consensus 226 --l~~l~~~~~--~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 226 --LVLIEKALR--FSQNLEHFDLRGNGFH 250 (317)
T ss_dssp --CCEECTTCC--CCTTCCEEECTTCCCB
T ss_pred --ccchhhHhh--cCCCCCEEEccCCCcc
Confidence 445554432 2556666666655544
No 61
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.79 E-value=1.9e-18 Score=154.14 Aligned_cols=194 Identities=21% Similarity=0.214 Sum_probs=163.6
Q ss_pred CccCCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCC
Q 016966 84 STIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLL 160 (379)
Q Consensus 84 ~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l 160 (379)
..+++++.++++++.+..+|... .++++.|++++|.+ ..+++..|..+++|++|++++|. ++. .+.+
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l--------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l 76 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLL--------YTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTL 76 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCC--------SEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCC
T ss_pred cccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcC--------CccCHHHhhcCCCCCEEECCCCccCcccC-CCCC
Confidence 45678999999999998888644 37899999999764 34555667899999999999998 443 3789
Q ss_pred CCCcEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccch-hhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEe
Q 016966 161 SNLRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPV-EVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYI 238 (379)
Q Consensus 161 ~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 238 (379)
++|++|++++|.+.. |..+..+++|++|++++|+++.+|. .+..+++|++|++++|.. ..+|...+..+++|+.|++
T Consensus 77 ~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L 155 (290)
T 1p9a_G 77 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL-KTLPPGLLTPTPKLEKLSL 155 (290)
T ss_dssp TTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEEC
T ss_pred CcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCC-CccChhhcccccCCCEEEC
Confidence 999999999999998 7888999999999999999998884 688999999999999765 4566666789999999999
Q ss_pred cCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccc-cccCCcEEEEEeec
Q 016966 239 GRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGL-LLEKLERYSIYIRR 298 (379)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~ 298 (379)
++|.+...+ ...+..+++|+.|++++|.++.+|..+ ..++|+.+.+..+.
T Consensus 156 ~~N~l~~l~----------~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 156 ANNNLTELP----------AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTSCCSCCC----------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred CCCcCCccC----------HHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 999998753 345678999999999999999999877 57889999885444
No 62
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.79 E-value=1.9e-18 Score=154.24 Aligned_cols=195 Identities=19% Similarity=0.238 Sum_probs=157.1
Q ss_pred CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccccCCCCCcEEEeecCCCCCccccc
Q 016966 105 VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGLLSNLRTLSLCSCGLPDISFVG 180 (379)
Q Consensus 105 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~l~~L~~L~l~~~~l~~~~~~~ 180 (379)
+..+++++++.+.++. ...+|..++ +++++|++++|. .+..+..+++|++|++++|.++..+..+
T Consensus 6 ~~~l~~l~~l~~~~~~--------l~~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 74 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRN--------LTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG 74 (290)
T ss_dssp EECSTTCCEEECTTSC--------CSSCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCS
T ss_pred ccccCCccEEECCCCC--------CCcCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCC
Confidence 3467889999999865 445665543 689999999998 4667899999999999999998833348
Q ss_pred CcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHh
Q 016966 181 YLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEE 260 (379)
Q Consensus 181 ~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 260 (379)
.+++|++|++++|.++.+|..+..+++|++|++++|... .++...++.+++|+.|++++|.+.... +..
T Consensus 75 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~----------~~~ 143 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLP----------PGL 143 (290)
T ss_dssp CCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCC----------TTT
T ss_pred CCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCc-ccCHHHHcCCCCCCEEECCCCCCCccC----------hhh
Confidence 899999999999999999998999999999999997654 555444899999999999999998753 455
Q ss_pred hcCCCCCcEEEeeccCCCCCCccc--cccCCcEEEEEeecccccCcccccceEEEEeCCcccchHHHHHHhcccceeecc
Q 016966 261 LKHLPNLTSLEVHVRDVSSLPRGL--LLEKLERYSIYIRRYFSRKTGIWCRQFRVELNNKICLKDSLIVQLQRIEDLELS 338 (379)
Q Consensus 261 l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~ 338 (379)
+..+++|+.|++++|.++.+|... .+++|+.|+++.+... .+|.++... ++|+.|++.
T Consensus 144 ~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-------------------~ip~~~~~~-~~L~~l~L~ 203 (290)
T 1p9a_G 144 LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-------------------TIPKGFFGS-HLLPFAFLH 203 (290)
T ss_dssp TTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-------------------CCCTTTTTT-CCCSEEECC
T ss_pred cccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-------------------ccChhhccc-ccCCeEEeC
Confidence 788999999999999999888765 5788888888444332 345445553 788899998
Q ss_pred ccc
Q 016966 339 ELQ 341 (379)
Q Consensus 339 ~~~ 341 (379)
+|+
T Consensus 204 ~Np 206 (290)
T 1p9a_G 204 GNP 206 (290)
T ss_dssp SCC
T ss_pred CCC
Confidence 887
No 63
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.79 E-value=2.7e-18 Score=152.21 Aligned_cols=170 Identities=21% Similarity=0.235 Sum_probs=99.8
Q ss_pred CCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccccCCCCCcEEEeecCCCCC--cccccCc
Q 016966 109 PQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGLLSNLRTLSLCSCGLPD--ISFVGYL 182 (379)
Q Consensus 109 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~l~~L~~L~l~~~~l~~--~~~~~~l 182 (379)
++++.|++++|.+ ..++...|.++++|++|++++|. .+..+..+++|++|++++|.+.. +..+..+
T Consensus 28 ~~l~~L~ls~n~l--------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (276)
T 2z62_A 28 FSTKNLDLSFNPL--------RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99 (276)
T ss_dssp TTCCEEECTTCCC--------CEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred CCccEEECCCCcc--------cccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCC
Confidence 4566777766543 33444445666777777777766 33356667777777777777666 3556667
Q ss_pred CCCcEEEeeCCcCcccch-hhcCCCCCCEEeccCCCCCc-ccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHh
Q 016966 183 KKLEILCLRGSDIVKLPV-EVGELTWLKLLDLRDCCFLK-VIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEE 260 (379)
Q Consensus 183 ~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 260 (379)
++|++|++++|.+..++. .+..+++|++|++++|.... .+|.. ++.+++|++|++++|.+.+.. ......
T Consensus 100 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~-------~~~~~~ 171 (276)
T 2z62_A 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY-------CTDLRV 171 (276)
T ss_dssp TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEEC-------GGGGHH
T ss_pred ccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchh-hccCCCCCEEECCCCCCCcCC-------HHHhhh
Confidence 777777777776666554 46667777777777755443 23444 566777777777777665532 011222
Q ss_pred hcCCCCCc-EEEeeccCCCCCCccc-cccCCcEEEE
Q 016966 261 LKHLPNLT-SLEVHVRDVSSLPRGL-LLEKLERYSI 294 (379)
Q Consensus 261 l~~l~~L~-~L~l~~~~~~~~~~~~-~~~~L~~L~l 294 (379)
+..++.|. .|++++|.+..++... ...+|+.|++
T Consensus 172 l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L 207 (276)
T 2z62_A 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELAL 207 (276)
T ss_dssp HHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEEC
T ss_pred hhhccccceeeecCCCcccccCccccCCCcccEEEC
Confidence 33333333 6666666666554433 2334555555
No 64
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.79 E-value=4.7e-18 Score=150.16 Aligned_cols=191 Identities=23% Similarity=0.297 Sum_probs=152.3
Q ss_pred CccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCc-cccCCCCC
Q 016966 88 HFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPS-SLGLLSNL 163 (379)
Q Consensus 88 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~-~i~~l~~L 163 (379)
..+.++++++.+..+|... .++++.|++++|.+ ..+++..|..+++|++|++++|. +|. .+..+++|
T Consensus 17 ~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l--------~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L 87 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKL--------SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL 87 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC-CTTCSEEECCSSCC--------SCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTC
T ss_pred CCCEEEccCCCCCccCCCC-CCCCCEEECcCCCC--------CeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCC
Confidence 5678888888887777533 26799999999664 34565567889999999999987 544 35789999
Q ss_pred cEEEeecCCCCC-c-ccccCcCCCcEEEeeCCcCcccch-hhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecC
Q 016966 164 RTLSLCSCGLPD-I-SFVGYLKKLEILCLRGSDIVKLPV-EVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGR 240 (379)
Q Consensus 164 ~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 240 (379)
++|++++|.+.. + ..+..+++|++|++++|.++.++. .+..+++|++|++++|.. ..++...++.+++|+.|++++
T Consensus 88 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~ 166 (270)
T 2o6q_A 88 ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYN 166 (270)
T ss_dssp CEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcC-CccCHhHccCCcccceeEecC
Confidence 999999999888 4 567889999999999999987775 468899999999999764 456655578899999999999
Q ss_pred CCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccc--cccCCcEEEEEeec
Q 016966 241 ESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGL--LLEKLERYSIYIRR 298 (379)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~ 298 (379)
|.+.... +..+..+++|+.|++++|.++.++... .+++|+.|++..+.
T Consensus 167 n~l~~~~----------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 167 NQLKRVP----------EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp SCCSCCC----------TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcCcEeC----------hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 9887753 455788899999999999998887754 57889999885444
No 65
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.79 E-value=2.8e-18 Score=148.73 Aligned_cols=196 Identities=15% Similarity=0.223 Sum_probs=159.5
Q ss_pred CcCCCCCCccCCccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecC-CC-
Q 016966 77 CREWSDGSTIKHFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTD-MI- 152 (379)
Q Consensus 77 ~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~- 152 (379)
++..+. ..+++++|++++|.+..++. +..+++|+.|++++|.. ...+++..|.++++|++|++++ +.
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~-------l~~i~~~~f~~l~~L~~L~l~~~n~l 93 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVT-------LQQLESHSFYNLSKVTHIEIRNTRNL 93 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSS-------CCEECTTTEESCTTCCEEEEEEETTC
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCC-------cceeCHhHcCCCcCCcEEECCCCCCe
Confidence 334444 45689999999999977775 45899999999999642 4456766788999999999998 66
Q ss_pred ---CCccccCCCCCcEEEeecCCCCCcccccCcCCCc---EEEeeCC-cCcccch-hhcCCCCCC-EEeccCCCCCcccC
Q 016966 153 ---LPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLE---ILCLRGS-DIVKLPV-EVGELTWLK-LLDLRDCCFLKVIP 223 (379)
Q Consensus 153 ---lp~~i~~l~~L~~L~l~~~~l~~~~~~~~l~~L~---~L~l~~~-~l~~lp~-~~~~l~~L~-~L~l~~~~~~~~~~ 223 (379)
.+..+..+++|++|++++|.++..+.+..+++|+ +|++++| .++.+|. .+..+++|+ +|++++|... .+|
T Consensus 94 ~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~ 172 (239)
T 2xwt_C 94 TYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQ 172 (239)
T ss_dssp CEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EEC
T ss_pred eEcCHHHhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccC
Confidence 3457889999999999999998833388888888 9999999 9998886 488899999 9999997654 777
Q ss_pred hhhhCCCCCCcEEEecCCC-CcChhhhhhcccccchHhhcCC-CCCcEEEeeccCCCCCCccccccCCcEEEE
Q 016966 224 PNILSKLSHLEELYIGRES-FVDWEEEVEGVKNASLEELKHL-PNLTSLEVHVRDVSSLPRGLLLEKLERYSI 294 (379)
Q Consensus 224 ~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l 294 (379)
...+.. ++|+.|++++|. +...+ ...+..+ ++|+.|++++|.++.+|.. .+++|+.|++
T Consensus 173 ~~~~~~-~~L~~L~L~~n~~l~~i~----------~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l 233 (239)
T 2xwt_C 173 GYAFNG-TKLDAVYLNKNKYLTVID----------KDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIA 233 (239)
T ss_dssp TTTTTT-CEEEEEECTTCTTCCEEC----------TTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEEC
T ss_pred HhhcCC-CCCCEEEcCCCCCcccCC----------HHHhhccccCCcEEECCCCccccCChh-HhccCceeec
Confidence 764444 899999999995 77643 4567888 9999999999999988876 6788998887
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=9.8e-20 Score=174.33 Aligned_cols=215 Identities=15% Similarity=0.141 Sum_probs=168.5
Q ss_pred CCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCCCCcEEEeecCCCCCcccccCcC
Q 016966 107 ECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLSNLRTLSLCSCGLPDISFVGYLK 183 (379)
Q Consensus 107 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~l~~~~~~~~l~ 183 (379)
.+++|+.|++++|.+ ..+++..|..+++|++|++++|. .+ .+..+++|++|++++|.++..+ ..+
T Consensus 32 ~~~~L~~L~Ls~n~l--------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~l~~l~~L~~L~Ls~N~l~~l~---~~~ 99 (487)
T 3oja_A 32 SAWNVKELDLSGNPL--------SQISAADLAPFTKLELLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQELL---VGP 99 (487)
T ss_dssp TGGGCCEEECCSSCC--------CCCCGGGGTTCTTCCEEECTTSCCEEEE-ECTTCTTCCEEECCSSEEEEEE---ECT
T ss_pred cCCCccEEEeeCCcC--------CCCCHHHHhCCCCCCEEEeeCCCCCCCc-ccccCCCCCEEEecCCcCCCCC---CCC
Confidence 455899999999764 34555667899999999999998 33 3888999999999999877621 237
Q ss_pred CCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhc-
Q 016966 184 KLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELK- 262 (379)
Q Consensus 184 ~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~- 262 (379)
+|++|++++|.++.++. ..+++|++|++++|......|.. ++.+++|+.|++++|.+.+.. +..+.
T Consensus 100 ~L~~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~----------~~~l~~ 166 (487)
T 3oja_A 100 SIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEIDTVN----------FAELAA 166 (487)
T ss_dssp TCCEEECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBC-GGGGSSEEEEECTTSCCCEEE----------GGGGGG
T ss_pred CcCEEECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchh-hcCCCCCCEEECCCCCCCCcC----------hHHHhh
Confidence 89999999999988775 35788999999998766655555 788999999999999887643 45554
Q ss_pred CCCCCcEEEeeccCCCCCCccccccCCcEEEEEeecccccCcccccceEEEEeCCcccchHHHHHHhcccceeecccccc
Q 016966 263 HLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYFSRKTGIWCRQFRVELNNKICLKDSLIVQLQRIEDLELSELQE 342 (379)
Q Consensus 263 ~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 342 (379)
.+++|+.|++++|.++.++....+++|+.|+++.+... .+|+.+.. +++|+.|++++|.
T Consensus 167 ~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~-------------------~~~~~~~~-l~~L~~L~Ls~N~- 225 (487)
T 3oja_A 167 SSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA-------------------FMGPEFQS-AAGVTWISLRNNK- 225 (487)
T ss_dssp GTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCC-------------------EECGGGGG-GTTCSEEECTTSC-
T ss_pred hCCcccEEecCCCccccccccccCCCCCEEECCCCCCC-------------------CCCHhHcC-CCCccEEEecCCc-
Confidence 78899999999999987776667889999988544433 23444555 4899999999997
Q ss_pred ccccccccccccccCCCCcEEEecCCCCc
Q 016966 343 QDVDYFRNELVKVGSSHLKRLRLEGSDLA 371 (379)
Q Consensus 343 ~~l~~~~~~~~~~~~~~L~~L~l~~c~~l 371 (379)
+..+|..+. .+++|+.|++++|+..
T Consensus 226 --l~~lp~~l~--~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 226 --LVLIEKALR--FSQNLEHFDLRGNGFH 250 (487)
T ss_dssp --CCEECTTCC--CCTTCCEEECTTCCBC
T ss_pred --Ccccchhhc--cCCCCCEEEcCCCCCc
Confidence 777887654 3899999999999876
No 67
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.78 E-value=1.2e-17 Score=158.35 Aligned_cols=199 Identities=19% Similarity=0.189 Sum_probs=110.8
Q ss_pred hhCCCceeEEEecCCC---CCccccCCCCCcEEEeecCCCCCcccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEec
Q 016966 137 FKSMIEVRVVNLTDMI---LPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDL 213 (379)
Q Consensus 137 ~~~l~~L~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l 213 (379)
|.++++|++|++++|. +|.. ..+|++|++++|.+...+.++.+++|++|++++|.++.+|.. .++|++|++
T Consensus 149 ~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l 222 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVA 222 (454)
T ss_dssp CTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEEC
T ss_pred cCCCCCCCEEECCCCcCcccCCC---cccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCC---cCcccEEEC
Confidence 4566666666666665 3332 236666666666666533566666666666666666665532 246666777
Q ss_pred cCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccccccCCcEEE
Q 016966 214 RDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYS 293 (379)
Q Consensus 214 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~ 293 (379)
++|... .+|. ++.+++|+.|++++|.+.+.+ . ..++|+.|++++|.+..+|.. +++|+.|+
T Consensus 223 ~~n~l~-~lp~--~~~l~~L~~L~l~~N~l~~l~-----------~---~~~~L~~L~l~~N~l~~l~~~--~~~L~~L~ 283 (454)
T 1jl5_A 223 GNNILE-ELPE--LQNLPFLTTIYADNNLLKTLP-----------D---LPPSLEALNVRDNYLTDLPEL--PQSLTFLD 283 (454)
T ss_dssp CSSCCS-SCCC--CTTCTTCCEEECCSSCCSSCC-----------S---CCTTCCEEECCSSCCSCCCCC--CTTCCEEE
T ss_pred cCCcCC-cccc--cCCCCCCCEEECCCCcCCccc-----------c---cccccCEEECCCCcccccCcc--cCcCCEEE
Confidence 665433 5553 567777777777777666532 1 124555555555555544432 24444444
Q ss_pred EEeecccc------------------cCccccc-ceEEEEe-CCc-ccchHHHHHHhcccceeecccccccccccccccc
Q 016966 294 IYIRRYFS------------------RKTGIWC-RQFRVEL-NNK-ICLKDSLIVQLQRIEDLELSELQEQDVDYFRNEL 352 (379)
Q Consensus 294 l~~~~~~~------------------~~~~~~~-~~~~L~l-~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~ 352 (379)
++.+.... ...+.++ +...|++ .+. ..+|.. +++|+.|++++|. ++.+|.
T Consensus 284 ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~----~~~L~~L~L~~N~---l~~lp~-- 354 (454)
T 1jl5_A 284 VSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL----PPRLERLIASFNH---LAEVPE-- 354 (454)
T ss_dssp CCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSC---CSCCCC--
T ss_pred CcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccccccc----CCcCCEEECCCCc---cccccc--
Confidence 43222111 1112222 3335666 222 223332 3677777777776 566655
Q ss_pred ccccCCCCcEEEecCCCCcc
Q 016966 353 VKVGSSHLKRLRLEGSDLAL 372 (379)
Q Consensus 353 ~~~~~~~L~~L~l~~c~~l~ 372 (379)
.+++|++|++++|+...
T Consensus 355 ---~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 355 ---LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp ---CCTTCCEEECCSSCCSS
T ss_pred ---hhhhccEEECCCCCCCc
Confidence 26788888888887776
No 68
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.78 E-value=1e-17 Score=148.02 Aligned_cols=175 Identities=25% Similarity=0.309 Sum_probs=149.1
Q ss_pred ccCCccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CC-cccc
Q 016966 85 TIKHFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LP-SSLG 158 (379)
Q Consensus 85 ~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp-~~i~ 158 (379)
.++++++|++++|.+..++. +..+++|+.|++++|.+ ..++..+|..+++|++|++++|. +| ..+.
T Consensus 35 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--------~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 106 (270)
T 2o6q_A 35 IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL--------QTLPAGIFKELKNLETLWVTDNKLQALPIGVFD 106 (270)
T ss_dssp CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCC--------SCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCcc--------CeeChhhhcCCCCCCEEECCCCcCCcCCHhHcc
Confidence 45789999999999987775 55899999999999664 45777778999999999999998 44 4568
Q ss_pred CCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCcccchh-hcCCCCCCEEeccCCCCCcccChhhhCCCCCCcE
Q 016966 159 LLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIVKLPVE-VGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEE 235 (379)
Q Consensus 159 ~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 235 (379)
.+++|++|++++|.+.. +..+..+++|++|++++|.++.+|.. +..+++|++|++++|.. ..++...+..+++|++
T Consensus 107 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~ 185 (270)
T 2o6q_A 107 QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL-KRVPEGAFDKLTELKT 185 (270)
T ss_dssp TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCE
T ss_pred cccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcC-cEeChhHhccCCCcCE
Confidence 89999999999999988 45678999999999999999988865 78999999999999765 4455554789999999
Q ss_pred EEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCC
Q 016966 236 LYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVS 278 (379)
Q Consensus 236 L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 278 (379)
|++++|.+...+ ...+..+++|+.|++++|.+.
T Consensus 186 L~L~~N~l~~~~----------~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 186 LKLDNNQLKRVP----------EGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp EECCSSCCSCCC----------TTTTTTCTTCCEEECCSSCBC
T ss_pred EECCCCcCCcCC----------HHHhccccCCCEEEecCCCee
Confidence 999999988753 445788999999999999876
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.78 E-value=2.3e-18 Score=152.66 Aligned_cols=195 Identities=21% Similarity=0.170 Sum_probs=158.5
Q ss_pred ccCCccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCcccc
Q 016966 85 TIKHFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLG 158 (379)
Q Consensus 85 ~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~ 158 (379)
..+++++|++++|.+..++. +..+++|+.|++++|.+ ..+++..|..+++|++|++++|. .+..+.
T Consensus 26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l--------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--------QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97 (276)
T ss_dssp SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCC--------CEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcC--------CccCHHHccCCcCCCEEECCCCccCccChhhhc
Confidence 45689999999999976664 55899999999999754 45666667899999999999998 556789
Q ss_pred CCCCCcEEEeecCCCCC-c-ccccCcCCCcEEEeeCCcCcc--cchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCc
Q 016966 159 LLSNLRTLSLCSCGLPD-I-SFVGYLKKLEILCLRGSDIVK--LPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLE 234 (379)
Q Consensus 159 ~l~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 234 (379)
.+++|++|++++|.+.. + ..++.+++|++|++++|.+.. +|..+..+++|++|++++|..... +...+..+++|+
T Consensus 98 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~ 176 (276)
T 2z62_A 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-YCTDLRVLHQMP 176 (276)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE-CGGGGHHHHTCT
T ss_pred CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC-CHHHhhhhhhcc
Confidence 99999999999999988 3 468999999999999999986 788999999999999999875544 333355555555
Q ss_pred ----EEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccc--cccCCcEEEEEeecc
Q 016966 235 ----ELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGL--LLEKLERYSIYIRRY 299 (379)
Q Consensus 235 ----~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~ 299 (379)
.|++++|.+... +.......+|+.|++++|.++.+|... .+++|+.|+++.+..
T Consensus 177 ~l~l~L~ls~n~l~~~-----------~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 177 LLNLSLDLSLNPMNFI-----------QPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp TCCEEEECCSSCCCEE-----------CTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred ccceeeecCCCccccc-----------CccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence 899999998764 233334458999999999999888765 589999999865543
No 70
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.78 E-value=4.5e-18 Score=147.46 Aligned_cols=203 Identities=16% Similarity=0.196 Sum_probs=143.4
Q ss_pred CCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----C-CccccCCCCCcEEEeec-C
Q 016966 98 KPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----L-PSSLGLLSNLRTLSLCS-C 171 (379)
Q Consensus 98 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----l-p~~i~~l~~L~~L~l~~-~ 171 (379)
.+..+|. -.++++.|++++|. ...+++..|..+++|++|++++|. + +..+..+++|++|++++ |
T Consensus 22 ~l~~ip~--~~~~l~~L~l~~n~--------l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n 91 (239)
T 2xwt_C 22 DIQRIPS--LPPSTQTLKLIETH--------LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91 (239)
T ss_dssp SCSSCCC--CCTTCCEEEEESCC--------CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET
T ss_pred CccccCC--CCCcccEEEEeCCc--------ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC
Confidence 3666776 34478999999865 445666667888899999998884 3 34678888889999888 7
Q ss_pred CCCC-c-ccccCcCCCcEEEeeCCcCcccchhhcCCCCCC---EEeccCCCCCcccChhhhCCCCCCc-EEEecCCCCcC
Q 016966 172 GLPD-I-SFVGYLKKLEILCLRGSDIVKLPVEVGELTWLK---LLDLRDCCFLKVIPPNILSKLSHLE-ELYIGRESFVD 245 (379)
Q Consensus 172 ~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~---~L~l~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~ 245 (379)
.++. + ..+..+++|++|++++|.++.+|. +..+++|+ +|++++|.....++...+..+++|+ .|++++|.+..
T Consensus 92 ~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~ 170 (239)
T 2xwt_C 92 NLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS 170 (239)
T ss_dssp TCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE
T ss_pred CeeEcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc
Confidence 8877 3 567788888888888888888886 77777777 8888887355666665577888888 88888887765
Q ss_pred hhhhhhcccccchHhhcCCCCCcEEEeeccC-CCCCCccccccCCcEEEEEeecccccCcccccceEEEEeCCcccchHH
Q 016966 246 WEEEVEGVKNASLEELKHLPNLTSLEVHVRD-VSSLPRGLLLEKLERYSIYIRRYFSRKTGIWCRQFRVELNNKICLKDS 324 (379)
Q Consensus 246 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~ 324 (379)
.+ ...+.. ++|+.|++++|. ++.++...
T Consensus 171 i~----------~~~~~~-~~L~~L~L~~n~~l~~i~~~~---------------------------------------- 199 (239)
T 2xwt_C 171 VQ----------GYAFNG-TKLDAVYLNKNKYLTVIDKDA---------------------------------------- 199 (239)
T ss_dssp EC----------TTTTTT-CEEEEEECTTCTTCCEECTTT----------------------------------------
T ss_pred cC----------HhhcCC-CCCCEEEcCCCCCcccCCHHH----------------------------------------
Confidence 32 122233 677777777773 66554321
Q ss_pred HHHHh-cccceeeccccccccccccccccccccCCCCcEEEecCCCC
Q 016966 325 LIVQL-QRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDL 370 (379)
Q Consensus 325 ~~~~~-~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 370 (379)
+.. + ++|+.|++++|. ++.++.. .|++|+.|++.++..
T Consensus 200 ~~~-l~~~L~~L~l~~N~---l~~l~~~----~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 200 FGG-VYSGPSLLDVSQTS---VTALPSK----GLEHLKELIARNTWT 238 (239)
T ss_dssp TTT-CSBCCSEEECTTCC---CCCCCCT----TCTTCSEEECTTC--
T ss_pred hhc-cccCCcEEECCCCc---cccCChh----HhccCceeeccCccC
Confidence 001 3 677788888876 6666653 378888888887764
No 71
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.77 E-value=2.5e-17 Score=156.16 Aligned_cols=252 Identities=18% Similarity=0.191 Sum_probs=151.1
Q ss_pred CCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCCCC
Q 016966 87 KHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLSNL 163 (379)
Q Consensus 87 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~~L 163 (379)
+++++|++++|.+..+|.+..+++|+.|++++|.+.. +|.. ..+|++|++++|. +| .++.+++|
T Consensus 131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~--------lp~~----~~~L~~L~L~~n~l~~l~-~~~~l~~L 197 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK--------LPDL----PPSLEFIAAGNNQLEELP-ELQNLPFL 197 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSC--------CCCC----CTTCCEEECCSSCCSSCC-CCTTCTTC
T ss_pred CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcc--------cCCC----cccccEEECcCCcCCcCc-cccCCCCC
Confidence 5788888888888778877788999999999976533 3331 3488889998888 66 58888888
Q ss_pred cEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCC
Q 016966 164 RTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRES 242 (379)
Q Consensus 164 ~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 242 (379)
++|++++|.+.. |... ++|++|++++|.+..+| .++.+++|++|++++|... .+|. .+++|+.|++++|.
T Consensus 198 ~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~-~l~~----~~~~L~~L~l~~N~ 268 (454)
T 1jl5_A 198 TAIYADNNSLKKLPDLP---LSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLK-TLPD----LPPSLEALNVRDNY 268 (454)
T ss_dssp CEEECCSSCCSSCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCS-SCCS----CCTTCCEEECCSSC
T ss_pred CEEECCCCcCCcCCCCc---CcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCC-cccc----cccccCEEECCCCc
Confidence 888888888777 3322 47888888888888888 4778888888888886543 3443 23667777777776
Q ss_pred CcChhhhhhc------ccccchHhhcC-CCCCcEEEeeccCCCCCCccccccCCcEEEEEeecccccCccc-ccceEEEE
Q 016966 243 FVDWEEEVEG------VKNASLEELKH-LPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYFSRKTGI-WCRQFRVE 314 (379)
Q Consensus 243 ~~~~~~~~~~------~~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~ 314 (379)
+.+.+..... ... ....+.. .++|+.|++++|.++.++.. .++|+.|+++.+.... .+. +++...|+
T Consensus 269 l~~l~~~~~~L~~L~ls~N-~l~~l~~~~~~L~~L~l~~N~l~~i~~~--~~~L~~L~Ls~N~l~~--lp~~~~~L~~L~ 343 (454)
T 1jl5_A 269 LTDLPELPQSLTFLDVSEN-IFSGLSELPPNLYYLNASSNEIRSLCDL--PPSLEELNVSNNKLIE--LPALPPRLERLI 343 (454)
T ss_dssp CSCCCCCCTTCCEEECCSS-CCSEESCCCTTCCEEECCSSCCSEECCC--CTTCCEEECCSSCCSC--CCCCCTTCCEEE
T ss_pred ccccCcccCcCCEEECcCC-ccCcccCcCCcCCEEECcCCcCCcccCC--cCcCCEEECCCCcccc--ccccCCcCCEEE
Confidence 6553200000 000 0000001 13556666665555544321 2588899886554432 333 35556888
Q ss_pred e--CCcccchHHHHHHhcccceeeccccccccccc---cccccccc-----------cCCCCcEEEecCCCCcc
Q 016966 315 L--NNKICLKDSLIVQLQRIEDLELSELQEQDVDY---FRNELVKV-----------GSSHLKRLRLEGSDLAL 372 (379)
Q Consensus 315 l--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~---~~~~~~~~-----------~~~~L~~L~l~~c~~l~ 372 (379)
+ +....+|. .+++|++|++++|. +.. +|..+..- .+++|++|++++|+...
T Consensus 344 L~~N~l~~lp~----~l~~L~~L~L~~N~---l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 344 ASFNHLAEVPE----LPQNLKQLHVEYNP---LREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp CCSSCCSCCCC----CCTTCCEEECCSSC---CSSCCCCCTTCCEEECCC------------------------
T ss_pred CCCCccccccc----hhhhccEEECCCCC---CCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 8 33334565 25999999999998 444 55544320 12889999999999887
No 72
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.77 E-value=8.7e-18 Score=148.58 Aligned_cols=175 Identities=20% Similarity=0.252 Sum_probs=140.8
Q ss_pred CCccCCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCcccc
Q 016966 83 GSTIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLG 158 (379)
Q Consensus 83 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~ 158 (379)
...+++++.|.+.++.+..++.+..+++|+.|++++|.+.+ ++ .+..+++|++|++++|. .+..+.
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~--------~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~ 106 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD--------IS--ALKELTNLTYLILTGNQLQSLPNGVFD 106 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCC--------CG--GGTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred cccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCC--------ch--hhcCCCCCCEEECCCCccCccChhHhc
Confidence 35677899999999988888888889999999999976543 22 36788999999999988 334478
Q ss_pred CCCCCcEEEeecCCCCC-c-ccccCcCCCcEEEeeCCcCcccchh-hcCCCCCCEEeccCCCCCcccChhhhCCCCCCcE
Q 016966 159 LLSNLRTLSLCSCGLPD-I-SFVGYLKKLEILCLRGSDIVKLPVE-VGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEE 235 (379)
Q Consensus 159 ~l~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 235 (379)
.+++|++|++++|.+.. + ..++.+++|++|++++|.++.+|.. +..+++|++|++++|... .++...++.+++|++
T Consensus 107 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~ 185 (272)
T 3rfs_A 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKD 185 (272)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC-ccCHHHhcCCccCCE
Confidence 89999999999999888 4 4578899999999999988888764 578999999999997654 455544688999999
Q ss_pred EEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCC
Q 016966 236 LYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVS 278 (379)
Q Consensus 236 L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 278 (379)
|++++|.+.+.. +..++.+++|+.|++++|.+.
T Consensus 186 L~L~~N~l~~~~----------~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 186 LRLYQNQLKSVP----------DGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp EECCSSCCSCCC----------TTTTTTCTTCCEEECCSSCBC
T ss_pred EECCCCcCCccC----------HHHHhCCcCCCEEEccCCCcc
Confidence 999999887643 455788899999999888765
No 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.77 E-value=8.5e-19 Score=155.09 Aligned_cols=218 Identities=19% Similarity=0.181 Sum_probs=167.7
Q ss_pred cCCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC--CCccccCCCCC
Q 016966 86 IKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI--LPSSLGLLSNL 163 (379)
Q Consensus 86 ~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--lp~~i~~l~~L 163 (379)
+..+..+.+..+.+........+++|+.|.+.+|.+.. ++. +..+++|++|++++|. ....+..+++|
T Consensus 18 ~~~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~--------~~~--l~~l~~L~~L~l~~n~l~~~~~l~~l~~L 87 (272)
T 3rfs_A 18 FAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKS--------VQG--IQYLPNVRYLALGGNKLHDISALKELTNL 87 (272)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCC--------CTT--GGGCTTCCEEECTTSCCCCCGGGTTCTTC
T ss_pred HHHHHHHHhcCcccccccccccccceeeeeeCCCCccc--------ccc--cccCCCCcEEECCCCCCCCchhhcCCCCC
Confidence 33444555555555444455578999999999976533 332 5789999999999998 44478999999
Q ss_pred cEEEeecCCCCC-c-ccccCcCCCcEEEeeCCcCcccchh-hcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecC
Q 016966 164 RTLSLCSCGLPD-I-SFVGYLKKLEILCLRGSDIVKLPVE-VGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGR 240 (379)
Q Consensus 164 ~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 240 (379)
++|++++|.++. + ..++.+++|++|++++|.++.+|.. +..+++|++|++++|... .++...++.+++|+.|++++
T Consensus 88 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~ 166 (272)
T 3rfs_A 88 TYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSY 166 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccC-ccCHHHhccCccCCEEECCC
Confidence 999999999988 4 5578999999999999999988764 789999999999998654 55555578999999999999
Q ss_pred CCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccc--cccCCcEEEEEeecccccCcccccceEEEEeCCc
Q 016966 241 ESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGL--LLEKLERYSIYIRRYFSRKTGIWCRQFRVELNNK 318 (379)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~l~~~ 318 (379)
|.+.+.. +..++.+++|+.|++++|.+..++... .+++|+.|++..+...
T Consensus 167 n~l~~~~----------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------------------ 218 (272)
T 3rfs_A 167 NQLQSLP----------EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------------------ 218 (272)
T ss_dssp SCCCCCC----------TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC------------------
T ss_pred CCcCccC----------HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc------------------
Confidence 9988653 455788999999999999999777654 6899999998544322
Q ss_pred ccchHHHHHHhcccceeecccccccccccccccc
Q 016966 319 ICLKDSLIVQLQRIEDLELSELQEQDVDYFRNEL 352 (379)
Q Consensus 319 ~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~ 352 (379)
.. ++.|+.|.+..|. ....+|..+
T Consensus 219 -------~~-~~~l~~l~~~~n~--~~g~ip~~~ 242 (272)
T 3rfs_A 219 -------CT-CPGIRYLSEWINK--HSGVVRNSA 242 (272)
T ss_dssp -------CC-TTTTHHHHHHHHH--TGGGBBCTT
T ss_pred -------cc-CcHHHHHHHHHHh--CCCcccCcc
Confidence 01 3667777777776 444555543
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.77 E-value=8.2e-19 Score=158.37 Aligned_cols=215 Identities=18% Similarity=0.202 Sum_probs=150.2
Q ss_pred ccEEEEeCCCCCC--CCCCC--------CCCCccEEEeecCCCCCCCCCCCcccChhhh-hCCCceeEEEecCCC---CC
Q 016966 89 FTSIVLHGIKPNL--LPEVL--------ECPQLELLFIRGGGRDDPWETSPVTIPDNFF-KSMIEVRVVNLTDMI---LP 154 (379)
Q Consensus 89 l~~L~l~~~~~~~--~~~~~--------~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~---lp 154 (379)
+++|+++++.+.. ++... .+++|+.|++++|.+ ...+|..+| ..+++|++|++++|. .|
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l-------~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 137 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEV-------TGTAPPPLLEATGPDLNILNLRNVSWATRD 137 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBC-------BSCCCCCSSSCCSCCCSEEEEESCBCSSSS
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcc-------cchhHHHHHHhcCCCccEEEccCCCCcchh
Confidence 6667777666522 33222 478888888888665 334555543 778888888888887 55
Q ss_pred ccccCC-----CCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCcc---cchhh--cCCCCCCEEeccCCCCCc--
Q 016966 155 SSLGLL-----SNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIVK---LPVEV--GELTWLKLLDLRDCCFLK-- 220 (379)
Q Consensus 155 ~~i~~l-----~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~---lp~~~--~~l~~L~~L~l~~~~~~~-- 220 (379)
..++.+ ++|++|++++|.+.. +..++.+++|++|++++|.+.. +|..+ ..+++|++|++++|....
T Consensus 138 ~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 217 (312)
T 1wwl_A 138 AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS 217 (312)
T ss_dssp SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHH
T ss_pred HHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchH
Confidence 556655 788888888888877 4778888888888888887653 34444 788888888888876542
Q ss_pred ccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccccccCCcEEEEEeeccc
Q 016966 221 VIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYF 300 (379)
Q Consensus 221 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 300 (379)
.++...+..+++|+.|++++|.+.+.. ....+..+++|+.|++++|.++.+|..+. ++|+.|+++.+...
T Consensus 218 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~---------~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-~~L~~L~Ls~N~l~ 287 (312)
T 1wwl_A 218 GVCSALAAARVQLQGLDLSHNSLRDAA---------GAPSCDWPSQLNSLNLSFTGLKQVPKGLP-AKLSVLDLSYNRLD 287 (312)
T ss_dssp HHHHHHHHTTCCCSEEECTTSCCCSSC---------CCSCCCCCTTCCEEECTTSCCSSCCSSCC-SEEEEEECCSSCCC
T ss_pred HHHHHHHhcCCCCCEEECCCCcCCccc---------chhhhhhcCCCCEEECCCCccChhhhhcc-CCceEEECCCCCCC
Confidence 344444567888888888888887632 12345567888888888888888887655 77888877544433
Q ss_pred ccCcccccceEEEEeCCcccchHHHHHHhcccceeeccccc
Q 016966 301 SRKTGIWCRQFRVELNNKICLKDSLIVQLQRIEDLELSELQ 341 (379)
Q Consensus 301 ~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 341 (379)
..|. +.. +++|++|++++|+
T Consensus 288 -------------------~~p~-~~~-l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 288 -------------------RNPS-PDE-LPQVGNLSLKGNP 307 (312)
T ss_dssp -------------------SCCC-TTT-SCEEEEEECTTCT
T ss_pred -------------------CChh-Hhh-CCCCCEEeccCCC
Confidence 1222 333 4888888888887
No 75
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.75 E-value=1.3e-17 Score=164.75 Aligned_cols=139 Identities=24% Similarity=0.193 Sum_probs=115.3
Q ss_pred cCcCCCCCCccCCccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC-
Q 016966 76 GCREWSDGSTIKHFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI- 152 (379)
Q Consensus 76 ~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~- 152 (379)
++...|. ..++.+++|++++|.+..+++ +..+++|+.|++++|. +..+++..|.++++|++|+|++|.
T Consensus 42 ~l~~vP~-~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~--------i~~i~~~~f~~L~~L~~L~Ls~N~l 112 (635)
T 4g8a_A 42 NFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE--------IQTIEDGAYQSLSHLSTLILTGNPI 112 (635)
T ss_dssp CCSSCCS-SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC--------CCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CcCccCC-CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc--------CCCcChhHhcCCCCCCEEEccCCcC
Confidence 4445554 456789999999999988875 5589999999999975 456777788999999999999998
Q ss_pred --CC-ccccCCCCCcEEEeecCCCCC-c-ccccCcCCCcEEEeeCCcCc--ccchhhcCCCCCCEEeccCCCCCcccC
Q 016966 153 --LP-SSLGLLSNLRTLSLCSCGLPD-I-SFVGYLKKLEILCLRGSDIV--KLPVEVGELTWLKLLDLRDCCFLKVIP 223 (379)
Q Consensus 153 --lp-~~i~~l~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~ 223 (379)
+| ..+..+.+|++|++++|.++. + ..++++++|++|++++|.+. .+|..++.+++|++|++++|......+
T Consensus 113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 190 (635)
T 4g8a_A 113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 190 (635)
T ss_dssp CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc
Confidence 55 468999999999999999988 4 56899999999999999887 457788899999999999976544433
No 76
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.75 E-value=3.8e-17 Score=147.09 Aligned_cols=179 Identities=19% Similarity=0.234 Sum_probs=153.0
Q ss_pred cCCCCCCccCCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CC
Q 016966 78 REWSDGSTIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LP 154 (379)
Q Consensus 78 ~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp 154 (379)
...+....++++++|++++|.+..++.+..+++|+.|++++|.+.+ ++ .+..+++|++|++++|. ++
T Consensus 54 ~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~--------~~--~~~~l~~L~~L~l~~n~l~~~~ 123 (308)
T 1h6u_A 54 TTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKN--------VS--AIAGLQSIKTLDLTSTQITDVT 123 (308)
T ss_dssp CCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSC--------CG--GGTTCTTCCEEECTTSCCCCCG
T ss_pred cCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCC--------ch--hhcCCCCCCEEECCCCCCCCch
Confidence 3444556789999999999999888887799999999999987643 33 36889999999999999 54
Q ss_pred ccccCCCCCcEEEeecCCCCCcccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCc
Q 016966 155 SSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLE 234 (379)
Q Consensus 155 ~~i~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 234 (379)
.+..+++|++|++++|.+...+.+..+++|++|++++|.++.++. +..+++|++|++++|... .++. +..+++|+
T Consensus 124 -~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~ 198 (308)
T 1h6u_A 124 -PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKIS-DISP--LASLPNLI 198 (308)
T ss_dssp -GGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-CCGG--GGGCTTCC
T ss_pred -hhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccC-cChh--hcCCCCCC
Confidence 489999999999999999984448999999999999999998886 899999999999997754 4454 68999999
Q ss_pred EEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCcc
Q 016966 235 ELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRG 283 (379)
Q Consensus 235 ~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 283 (379)
+|++++|.+.+. + .+..+++|+.|++++|.++..|..
T Consensus 199 ~L~L~~N~l~~~-----------~-~l~~l~~L~~L~l~~N~i~~~~~~ 235 (308)
T 1h6u_A 199 EVHLKNNQISDV-----------S-PLANTSNLFIVTLTNQTITNQPVF 235 (308)
T ss_dssp EEECTTSCCCBC-----------G-GGTTCTTCCEEEEEEEEEECCCEE
T ss_pred EEEccCCccCcc-----------c-cccCCCCCCEEEccCCeeecCCee
Confidence 999999999863 2 478999999999999998876654
No 77
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=1.7e-17 Score=148.15 Aligned_cols=173 Identities=27% Similarity=0.360 Sum_probs=144.0
Q ss_pred CccCCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC--CCccccCCC
Q 016966 84 STIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI--LPSSLGLLS 161 (379)
Q Consensus 84 ~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--lp~~i~~l~ 161 (379)
..+++++.|++++|.+..++.+..+++|+.|++++|.+.+ +++ +..+++|++|++++|. .+..+..++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~--------~~~--l~~l~~L~~L~l~~n~l~~~~~l~~l~ 112 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD--------IKP--LANLKNLGWLFLDENKVKDLSSLKDLK 112 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC--------CGG--GTTCTTCCEEECCSSCCCCGGGGTTCT
T ss_pred hhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCC--------Ccc--cccCCCCCEEECCCCcCCCChhhccCC
Confidence 4577899999999999888887789999999999976543 333 6789999999999998 334588999
Q ss_pred CCcEEEeecCCCCCcccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCC
Q 016966 162 NLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRE 241 (379)
Q Consensus 162 ~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 241 (379)
+|++|++++|.+..++.+..+++|++|++++|.++.++ .+..+++|++|++++|.... ++. +..+++|+.|++++|
T Consensus 113 ~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~N~l~~-~~~--l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 113 KLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISD-IVP--LAGLTKLQNLYLSKN 188 (291)
T ss_dssp TCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCC-CGG--GTTCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcch-hhccCCCCCEEEccCCcccc-chh--hcCCCccCEEECCCC
Confidence 99999999999888777889999999999999998884 78899999999999976544 443 688999999999999
Q ss_pred CCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCc
Q 016966 242 SFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPR 282 (379)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 282 (379)
.+.+. +.+..+++|+.|++++|.+...|.
T Consensus 189 ~i~~l------------~~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 189 HISDL------------RALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp CCCBC------------GGGTTCTTCSEEEEEEEEEECCCE
T ss_pred cCCCC------------hhhccCCCCCEEECcCCcccCCcc
Confidence 88762 357888999999999988776554
No 78
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.75 E-value=5.2e-17 Score=141.81 Aligned_cols=172 Identities=22% Similarity=0.291 Sum_probs=132.8
Q ss_pred CccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccccCCCCC
Q 016966 88 HFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGLLSNL 163 (379)
Q Consensus 88 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~l~~L 163 (379)
..++++++++.+..+|.... +.++.|++++|.+. .+++..|.++++|++|++++|. .+..+..+++|
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~--------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 85 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLA--------TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL 85 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCC--------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcC--------ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcC
Confidence 55678888888877776433 68899999986643 3455557888899999999887 44557888899
Q ss_pred cEEEeecCCCCC-c-ccccCcCCCcEEEeeCCcCcccchh-hcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecC
Q 016966 164 RTLSLCSCGLPD-I-SFVGYLKKLEILCLRGSDIVKLPVE-VGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGR 240 (379)
Q Consensus 164 ~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 240 (379)
++|++++|.++. + ..+..+++|++|++++|.++.+|.. +..+++|++|++++|.. ..++...++.+++|++|++++
T Consensus 86 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~ 164 (251)
T 3m19_A 86 GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL-QSIPAGAFDKLTNLQTLSLST 164 (251)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcC-CccCHHHcCcCcCCCEEECCC
Confidence 999999988887 3 5678888999999999988888765 57888899999988754 455554478888899999888
Q ss_pred CCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCC
Q 016966 241 ESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSS 279 (379)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 279 (379)
|.+.... +..+..+++|+.|++++|.+..
T Consensus 165 N~l~~~~----------~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 165 NQLQSVP----------HGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp SCCSCCC----------TTTTTTCTTCCEEECCSCCBCT
T ss_pred CcCCccC----------HHHHhCCCCCCEEEeeCCceeC
Confidence 8887643 4567778888888888887763
No 79
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.73 E-value=8.1e-17 Score=159.12 Aligned_cols=108 Identities=15% Similarity=0.198 Sum_probs=91.8
Q ss_pred CCccCCccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CC-cc
Q 016966 83 GSTIKHFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LP-SS 156 (379)
Q Consensus 83 ~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp-~~ 156 (379)
+..++++++|++++|.+..+++ +..+++|++|++++|. ...+|+..|.++++|++|++++|. +| ..
T Consensus 72 f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~--------l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~ 143 (635)
T 4g8a_A 72 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP--------IQSLALGAFSGLSSLQKLVAVETNLASLENFP 143 (635)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC--------CCEECGGGGTTCTTCCEEECTTSCCCCSTTCC
T ss_pred HhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc--------CCCCCHHHhcCCCCCCEEECCCCcCCCCChhh
Confidence 4678899999999999987775 4589999999999975 556788889999999999999998 44 45
Q ss_pred ccCCCCCcEEEeecCCCCC---cccccCcCCCcEEEeeCCcCccc
Q 016966 157 LGLLSNLRTLSLCSCGLPD---ISFVGYLKKLEILCLRGSDIVKL 198 (379)
Q Consensus 157 i~~l~~L~~L~l~~~~l~~---~~~~~~l~~L~~L~l~~~~l~~l 198 (379)
++.+++|++|++++|.+.. |..++.+++|++|++++|.++.+
T Consensus 144 ~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred hhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence 8999999999999999865 57788899999999998877643
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=150.91 Aligned_cols=225 Identities=13% Similarity=0.080 Sum_probs=163.1
Q ss_pred CCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccc--cCCCCCcEEEeecCCCCC--c--
Q 016966 107 ECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSL--GLLSNLRTLSLCSCGLPD--I-- 176 (379)
Q Consensus 107 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i--~~l~~L~~L~l~~~~l~~--~-- 176 (379)
....++.+.+..+.+.+.. ...+.. +..+++|++|++++|. .|..+ ..+++|++|++++|.+.. +
T Consensus 62 ~~~~l~~l~l~~~~~~~~~---~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~ 136 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQL---LVGALR--VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWL 136 (310)
T ss_dssp SSCCCCEEEECSCCCBHHH---HHHHHH--HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSH
T ss_pred hhcceeEEEEeCCcCCHHH---HHHHHH--hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhh
Confidence 4455778888774432100 001111 1234679999999998 66666 889999999999999876 2
Q ss_pred --ccccCcCCCcEEEeeCCcCcccc-hhhcCCCCCCEEeccCCCCCcc--cC-hhhhCCCCCCcEEEecCCCCcChhhhh
Q 016966 177 --SFVGYLKKLEILCLRGSDIVKLP-VEVGELTWLKLLDLRDCCFLKV--IP-PNILSKLSHLEELYIGRESFVDWEEEV 250 (379)
Q Consensus 177 --~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~--~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~ 250 (379)
..+..+++|++|++++|.+..++ ..++.+++|++|++++|...+. ++ ...++.+++|++|++++|.+...+.
T Consensus 137 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-- 214 (310)
T 4glp_A 137 AELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTG-- 214 (310)
T ss_dssp HHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH--
T ss_pred HHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHH--
Confidence 33457899999999999998776 5788999999999999876543 22 2224789999999999999875430
Q ss_pred hcccccchH-hhcCCCCCcEEEeeccCCCCC-Cccc-c---ccCCcEEEEEeecccccCcccccceEEEEeCCcccchHH
Q 016966 251 EGVKNASLE-ELKHLPNLTSLEVHVRDVSSL-PRGL-L---LEKLERYSIYIRRYFSRKTGIWCRQFRVELNNKICLKDS 324 (379)
Q Consensus 251 ~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~-~~~~-~---~~~L~~L~l~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~ 324 (379)
.+. .++.+++|++|++++|.+... |..+ . +++|+.|+++.+... .+|..
T Consensus 215 ------~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-------------------~lp~~ 269 (310)
T 4glp_A 215 ------VCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-------------------QVPKG 269 (310)
T ss_dssp ------HHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-------------------SCCSC
T ss_pred ------HHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-------------------chhhh
Confidence 122 247789999999999999965 6554 3 379999998544433 23332
Q ss_pred HHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCCcc
Q 016966 325 LIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLAL 372 (379)
Q Consensus 325 ~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~ 372 (379)
+ +++|+.|++++|. ++.++. ...+++|+.|++++|+...
T Consensus 270 ~---~~~L~~L~Ls~N~---l~~~~~---~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 270 L---PAKLRVLDLSSNR---LNRAPQ---PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp C---CSCCSCEECCSCC---CCSCCC---TTSCCCCSCEECSSTTTSC
T ss_pred h---cCCCCEEECCCCc---CCCCch---hhhCCCccEEECcCCCCCC
Confidence 2 4899999999998 777654 2358999999999998764
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.72 E-value=1.3e-17 Score=150.30 Aligned_cols=192 Identities=13% Similarity=0.108 Sum_probs=127.2
Q ss_pred CCccEEEEeCCCCC-CCCC-C--CCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCcccc
Q 016966 87 KHFTSIVLHGIKPN-LLPE-V--LECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLG 158 (379)
Q Consensus 87 ~~l~~L~l~~~~~~-~~~~-~--~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~ 158 (379)
+++++|++++|.+. ..+. + ..+++|++|++++|.+... ...++...+..+++|++|++++|. .|..++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~----~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 166 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATG----RSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR 166 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSST----TSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccch----hhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc
Confidence 45778888888773 3333 2 5677788888888766432 222222233467788888888877 445677
Q ss_pred CCCCCcEEEeecCCCCC----c--ccccCcCCCcEEEeeCCcCcccchh----hcCCCCCCEEeccCCCCCcccChhhhC
Q 016966 159 LLSNLRTLSLCSCGLPD----I--SFVGYLKKLEILCLRGSDIVKLPVE----VGELTWLKLLDLRDCCFLKVIPPNILS 228 (379)
Q Consensus 159 ~l~~L~~L~l~~~~l~~----~--~~~~~l~~L~~L~l~~~~l~~lp~~----~~~l~~L~~L~l~~~~~~~~~~~~~l~ 228 (379)
.+++|++|++++|.+.. + ..++.+++|++|++++|.++.++.. +..+++|++|++++|......|.. ++
T Consensus 167 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~-~~ 245 (310)
T 4glp_A 167 AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS-AP 245 (310)
T ss_dssp CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC-CS
T ss_pred cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh-HH
Confidence 78888888888887543 1 2235677888888888877766542 456778888888887766555554 34
Q ss_pred CC---CCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccccccCCcEEEEEe
Q 016966 229 KL---SHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYI 296 (379)
Q Consensus 229 ~l---~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~ 296 (379)
.+ ++|++|++++|.+... +..+. ++|+.|++++|.++.+|....+++|+.|+++.
T Consensus 246 ~~~~~~~L~~L~Ls~N~l~~l-----------p~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~ 303 (310)
T 4glp_A 246 RCMWSSALNSLNLSFAGLEQV-----------PKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLTLDG 303 (310)
T ss_dssp SCCCCTTCCCEECCSSCCCSC-----------CSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEECSS
T ss_pred hccCcCcCCEEECCCCCCCch-----------hhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEECcC
Confidence 44 5888888888877753 33332 67888888888887766544677777777743
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.71 E-value=2.8e-18 Score=159.58 Aligned_cols=233 Identities=17% Similarity=0.105 Sum_probs=125.8
Q ss_pred ccCCccEEEEeCCCCCC-----CC-CCCCCCCccEEEeecCCCCCCCCCCCcccChhh------hhCCCceeEEEecCCC
Q 016966 85 TIKHFTSIVLHGIKPNL-----LP-EVLECPQLELLFIRGGGRDDPWETSPVTIPDNF------FKSMIEVRVVNLTDMI 152 (379)
Q Consensus 85 ~~~~l~~L~l~~~~~~~-----~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~------~~~l~~L~~L~l~~~~ 152 (379)
..+++++|++++|.+.. ++ .+..+++|+.|.+++|.++.. ...+|..+ |..+++|++|++++|.
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l----~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRV----KDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSC----GGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCcc----ccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 34567777777776532 11 133566777777777554432 22333332 3566777777777766
Q ss_pred --------CCccccCCCCCcEEEeecCCCCC--ccc----ccCc---------CCCcEEEeeCCcCc--ccc---hhhcC
Q 016966 153 --------LPSSLGLLSNLRTLSLCSCGLPD--ISF----VGYL---------KKLEILCLRGSDIV--KLP---VEVGE 204 (379)
Q Consensus 153 --------lp~~i~~l~~L~~L~l~~~~l~~--~~~----~~~l---------~~L~~L~l~~~~l~--~lp---~~~~~ 204 (379)
+|..+..+++|++|++++|.+.. +.. +..+ ++|++|++++|.++ .+| ..+..
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence 23355666777777777776653 222 2233 67777777777664 333 34556
Q ss_pred CCCCCEEeccCCCCCcc----cChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCC
Q 016966 205 LTWLKLLDLRDCCFLKV----IPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSL 280 (379)
Q Consensus 205 l~~L~~L~l~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 280 (379)
+++|++|++++|..... +....+..+++|++|++++|.+.... ...++..+..+++|+.|++++|.+...
T Consensus 186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g------~~~l~~~l~~~~~L~~L~L~~n~i~~~ 259 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG------SSALAIALKSWPNLRELGLNDCLLSAR 259 (386)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH------HHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH------HHHHHHHHccCCCcCEEECCCCCCchh
Confidence 66777777777654321 11112566677777777766664211 112345566667777777776666532
Q ss_pred -----Cccc-c--ccCCcEEEEEeecccccCcccccceEEEEeCCcccchHHHHHHhcccceeeccccc
Q 016966 281 -----PRGL-L--LEKLERYSIYIRRYFSRKTGIWCRQFRVELNNKICLKDSLIVQLQRIEDLELSELQ 341 (379)
Q Consensus 281 -----~~~~-~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 341 (379)
+..+ . +++|+.|+++.+.... .....+|..+...+++|++|++++|+
T Consensus 260 ~~~~l~~~l~~~~~~~L~~L~L~~n~i~~--------------~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 260 GAAAVVDAFSKLENIGLQTLRLQYNEIEL--------------DAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHHHHHTCSSCCCCEEECCSSCCBH--------------HHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred hHHHHHHHHhhccCCCeEEEECcCCcCCH--------------HHHHHHHHHHHhcCCCceEEEccCCc
Confidence 2222 1 5566666664333220 00012444442223667777777666
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.71 E-value=1.9e-18 Score=160.71 Aligned_cols=240 Identities=15% Similarity=0.154 Sum_probs=160.7
Q ss_pred CCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC-------CCccc-------cCCCCCcEEEeecCC
Q 016966 107 ECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI-------LPSSL-------GLLSNLRTLSLCSCG 172 (379)
Q Consensus 107 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------lp~~i-------~~l~~L~~L~l~~~~ 172 (379)
.+++|+.|++++|.+.+. ........+..+++|++|++++|. +|..+ ..+++|++|++++|.
T Consensus 30 ~~~~L~~L~L~~n~i~~~----~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTE----AARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HCSCCCEEECTTSEECHH----HHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred cCCCccEEECCCCCCCHH----HHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 678899999998765321 111111235678899999998874 34333 688999999999998
Q ss_pred CCC------cccccCcCCCcEEEeeCCcCc-----ccchhhcCC---------CCCCEEeccCCCCC-cccCh--hhhCC
Q 016966 173 LPD------ISFVGYLKKLEILCLRGSDIV-----KLPVEVGEL---------TWLKLLDLRDCCFL-KVIPP--NILSK 229 (379)
Q Consensus 173 l~~------~~~~~~l~~L~~L~l~~~~l~-----~lp~~~~~l---------~~L~~L~l~~~~~~-~~~~~--~~l~~ 229 (379)
+.. +..+..+++|++|++++|.++ .++..+..+ ++|++|++++|... ..++. ..+..
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence 766 346778899999999999876 233334444 88999999988765 33442 22667
Q ss_pred CCCCcEEEecCCCCcChhhhhhcccccchH-hhcCCCCCcEEEeeccCC-----CCCCccc-cccCCcEEEEEeeccccc
Q 016966 230 LSHLEELYIGRESFVDWEEEVEGVKNASLE-ELKHLPNLTSLEVHVRDV-----SSLPRGL-LLEKLERYSIYIRRYFSR 302 (379)
Q Consensus 230 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~-----~~~~~~~-~~~~L~~L~l~~~~~~~~ 302 (379)
+++|++|++++|.+.... .....+ .+..+++|+.|++++|.+ ..+|..+ .+++|+.|+++.+....
T Consensus 186 ~~~L~~L~L~~n~l~~~g------~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~- 258 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEG------IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA- 258 (386)
T ss_dssp CTTCCEEECCSSCCCHHH------HHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH-
T ss_pred CCCcCEEECcCCCCCHhH------HHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch-
Confidence 889999999988876321 111233 777888999999998887 3455544 57889998884433220
Q ss_pred CcccccceEEEEeCCcccchHHHHH-Hhcccceeeccccccccccc-----cccccccccCCCCcEEEecCCCCccCC
Q 016966 303 KTGIWCRQFRVELNNKICLKDSLIV-QLQRIEDLELSELQEQDVDY-----FRNELVKVGSSHLKRLRLEGSDLALNP 374 (379)
Q Consensus 303 ~~~~~~~~~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~l~~-----~~~~~~~~~~~~L~~L~l~~c~~l~~~ 374 (379)
.....++..+.. .+++|+.|++++|. +.. ++..+. ..+|+|++|++++|+.....
T Consensus 259 -------------~~~~~l~~~l~~~~~~~L~~L~L~~n~---i~~~g~~~l~~~l~-~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 259 -------------RGAAAVVDAFSKLENIGLQTLRLQYNE---IELDAVRTLKTVID-EKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp -------------HHHHHHHHHHHTCSSCCCCEEECCSSC---CBHHHHHHHHHHHH-HHCTTCCEEECTTSBSCTTS
T ss_pred -------------hhHHHHHHHHhhccCCCeEEEECcCCc---CCHHHHHHHHHHHH-hcCCCceEEEccCCcCCcch
Confidence 000112333322 03889999999997 555 555442 24799999999999877544
No 84
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.71 E-value=1.8e-16 Score=145.40 Aligned_cols=189 Identities=15% Similarity=0.114 Sum_probs=103.4
Q ss_pred cCCccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeE-EEecCCC----CCcccc
Q 016966 86 IKHFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRV-VNLTDMI----LPSSLG 158 (379)
Q Consensus 86 ~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~-L~l~~~~----lp~~i~ 158 (379)
++++++|++++|.+..++. +..+++|+.|++++|.+ ...++...|.+++++.. +.++++. .|..+.
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i-------~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~ 101 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV-------LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ 101 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTT-------CCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBC
T ss_pred CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCC-------CCccChhHhhcchhhhhhhcccCCcccccCchhhh
Confidence 4566666666666666654 33666666666666543 33455555666665554 3334443 344566
Q ss_pred CCCCCcEEEeecCCCCC-c-ccccCcCCCcEEEeeCC-cCcccchh-hcCC-CCCCEEeccCCCCCcccChhhhCCCCCC
Q 016966 159 LLSNLRTLSLCSCGLPD-I-SFVGYLKKLEILCLRGS-DIVKLPVE-VGEL-TWLKLLDLRDCCFLKVIPPNILSKLSHL 233 (379)
Q Consensus 159 ~l~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~-~l~~lp~~-~~~l-~~L~~L~l~~~~~~~~~~~~~l~~l~~L 233 (379)
.+++|++|++++|.+.. + ..+....++..|++.++ .+..+|.. +..+ ..++.|++++|. +..++.. .....+|
T Consensus 102 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~-~f~~~~L 179 (350)
T 4ay9_X 102 NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNS-AFNGTQL 179 (350)
T ss_dssp CCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTT-SSTTEEE
T ss_pred hccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChh-hccccch
Confidence 66666666666666655 2 23334445666666553 55555542 3333 246666666644 3445544 3345566
Q ss_pred cEEEecC-CCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccccccCCcEEEE
Q 016966 234 EELYIGR-ESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSI 294 (379)
Q Consensus 234 ~~L~l~~-~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l 294 (379)
+.|.+.+ |.+...+ ...++.+++|+.|++++|.++.+|.. .+.+|+.|.+
T Consensus 180 ~~l~l~~~n~l~~i~----------~~~f~~l~~L~~LdLs~N~l~~lp~~-~~~~L~~L~~ 230 (350)
T 4ay9_X 180 DELNLSDNNNLEELP----------NDVFHGASGPVILDISRTRIHSLPSY-GLENLKKLRA 230 (350)
T ss_dssp EEEECTTCTTCCCCC----------TTTTTTEECCSEEECTTSCCCCCCSS-SCTTCCEEEC
T ss_pred hHHhhccCCcccCCC----------HHHhccCcccchhhcCCCCcCccChh-hhccchHhhh
Confidence 6666653 3344321 23456666666666666666666654 2445555543
No 85
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=7.4e-17 Score=157.64 Aligned_cols=173 Identities=27% Similarity=0.378 Sum_probs=148.0
Q ss_pred CccCCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC--CCccccCCC
Q 016966 84 STIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI--LPSSLGLLS 161 (379)
Q Consensus 84 ~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--lp~~i~~l~ 161 (379)
..+++++.|++++|.+..++.+..+++|+.|++++|.+.+ +++ +..+++|+.|+|++|. .+..+..++
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~--------~~~--l~~l~~L~~L~Ls~N~l~~l~~l~~l~ 109 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD--------IKP--LTNLKNLGWLFLDENKIKDLSSLKDLK 109 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCC--------CGG--GGGCTTCCEEECCSSCCCCCTTSTTCT
T ss_pred hcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCC--------Chh--hccCCCCCEEECcCCCCCCChhhccCC
Confidence 4677899999999999888888899999999999977544 333 6789999999999998 334789999
Q ss_pred CCcEEEeecCCCCCcccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCC
Q 016966 162 NLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRE 241 (379)
Q Consensus 162 ~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 241 (379)
+|++|++++|.+..++.+..+++|+.|++++|.++.+ ..+..+++|++|++++|......| +..+++|+.|++++|
T Consensus 110 ~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 110 KLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKN 185 (605)
T ss_dssp TCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSS
T ss_pred CCCEEEecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCC
Confidence 9999999999998877899999999999999999988 478999999999999987655444 689999999999999
Q ss_pred CCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCc
Q 016966 242 SFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPR 282 (379)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 282 (379)
.+.+ ++.+..+++|+.|++++|.+...|.
T Consensus 186 ~i~~------------l~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 186 HISD------------LRALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp CCCB------------CGGGTTCTTCSEEECCSEEEECCCC
T ss_pred CCCC------------ChHHccCCCCCEEEccCCcCcCCcc
Confidence 8876 2468889999999999988775543
No 86
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.70 E-value=9.6e-19 Score=166.53 Aligned_cols=270 Identities=16% Similarity=0.124 Sum_probs=156.3
Q ss_pred CccEEEEeCCCCCC-----CCC-CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC--------C
Q 016966 88 HFTSIVLHGIKPNL-----LPE-VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI--------L 153 (379)
Q Consensus 88 ~l~~L~l~~~~~~~-----~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--------l 153 (379)
++++|++++|.+.. ++. +..+++|+.|++++|.+.+.. ...+...++...++|++|++++|. +
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~---~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAG---LQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHH---HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHH---HHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 57777777777642 222 336777777777776542210 001112222334567777777776 2
Q ss_pred CccccCCCCCcEEEeecCCCCC--ccccc-----CcCCCcEEEeeCCcCcc-----cchhhcCCCCCCEEeccCCCCCcc
Q 016966 154 PSSLGLLSNLRTLSLCSCGLPD--ISFVG-----YLKKLEILCLRGSDIVK-----LPVEVGELTWLKLLDLRDCCFLKV 221 (379)
Q Consensus 154 p~~i~~l~~L~~L~l~~~~l~~--~~~~~-----~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~~~~ 221 (379)
+..+..+++|++|++++|.+.. +..+. .+++|++|++++|.++. ++..+..+++|++|++++|.....
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 4445566777888887777655 33333 24577888888777764 466666777888888877654332
Q ss_pred ----cChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCc-cc------cccCCc
Q 016966 222 ----IPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPR-GL------LLEKLE 290 (379)
Q Consensus 222 ----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~------~~~~L~ 290 (379)
+.......+++|++|++++|.+.... ...++..+..+++|+.|++++|.+..... .+ ..++|+
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~------~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~ 316 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKG------CGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLE 316 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHH------HHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCC
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHH------HHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccce
Confidence 11222345777888888877766432 11234556667788888888777652211 11 125777
Q ss_pred EEEEEeecccccC---cc----cccceEEEEe-CCcccc--hHHHHHH----hcccceeecccccccccc-----ccccc
Q 016966 291 RYSIYIRRYFSRK---TG----IWCRQFRVEL-NNKICL--KDSLIVQ----LQRIEDLELSELQEQDVD-----YFRNE 351 (379)
Q Consensus 291 ~L~l~~~~~~~~~---~~----~~~~~~~L~l-~~~~~~--~~~~~~~----~~~L~~L~l~~~~~~~l~-----~~~~~ 351 (379)
.|+++.+...... .+ ..++...|++ .+.... +..+... .++|++|++++|. ++ .++..
T Consensus 317 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~---i~~~~~~~l~~~ 393 (461)
T 1z7x_W 317 SLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD---VSDSSCSSLAAT 393 (461)
T ss_dssp EEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC---CCHHHHHHHHHH
T ss_pred eeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC---CChhhHHHHHHH
Confidence 7777544432111 11 1244447777 333321 2223321 2478888888886 44 44544
Q ss_pred cccccCCCCcEEEecCCCCc
Q 016966 352 LVKVGSSHLKRLRLEGSDLA 371 (379)
Q Consensus 352 ~~~~~~~~L~~L~l~~c~~l 371 (379)
+.. +++|++|++++|+..
T Consensus 394 l~~--~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 394 LLA--NHSLRELDLSNNCLG 411 (461)
T ss_dssp HHH--CCCCCEEECCSSSCC
T ss_pred HHh--CCCccEEECCCCCCC
Confidence 433 788888888888754
No 87
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.70 E-value=1.6e-16 Score=141.77 Aligned_cols=185 Identities=21% Similarity=0.188 Sum_probs=151.8
Q ss_pred ccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCCCCcE
Q 016966 89 FTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLSNLRT 165 (379)
Q Consensus 89 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~~L~~ 165 (379)
+.++.+....+..+.....+++|+.|.+.+|.+.+ ++. +..+++|++|++++|. ++. +..+++|++
T Consensus 26 ~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~--------~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~ 94 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKS--------VQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGW 94 (291)
T ss_dssp HHHHHTTCSCTTSEECHHHHHTCCEEECTTSCCCC--------CTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCE
T ss_pred HHHHHhcCCCcccccchhhcCcccEEEccCCCccc--------Chh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCE
Confidence 33334444444444445578899999999976543 343 6789999999999998 554 899999999
Q ss_pred EEeecCCCCCcccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcC
Q 016966 166 LSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVD 245 (379)
Q Consensus 166 L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 245 (379)
|++++|.+..++.+..+++|++|++++|.++.++ .+..+++|++|++++|.... ++ . ++.+++|+.|++++|.+.+
T Consensus 95 L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~-~~-~-l~~l~~L~~L~L~~N~l~~ 170 (291)
T 1h6t_A 95 LFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITD-IT-V-LSRLTKLDTLSLEDNQISD 170 (291)
T ss_dssp EECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCC-CG-G-GGGCTTCSEEECCSSCCCC
T ss_pred EECCCCcCCCChhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCCc-ch-h-hccCCCCCEEEccCCcccc
Confidence 9999999999777999999999999999999885 68899999999999977544 43 3 7899999999999999987
Q ss_pred hhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccccccCCcEEEEEeeccc
Q 016966 246 WEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYF 300 (379)
Q Consensus 246 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 300 (379)
.. . +..+++|+.|++++|.++.++....+++|+.|+++.+...
T Consensus 171 ~~-----------~-l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 171 IV-----------P-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CG-----------G-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEEEE
T ss_pred ch-----------h-hcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCccc
Confidence 42 2 8899999999999999998876447899999999777654
No 88
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.70 E-value=9e-16 Score=150.20 Aligned_cols=210 Identities=19% Similarity=0.150 Sum_probs=164.5
Q ss_pred ccCCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCC
Q 016966 85 TIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLS 161 (379)
Q Consensus 85 ~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~ 161 (379)
.+++++.|++++|.+..+|. .+++|+.|++++|.+.. +|. .+++|+.|++++|. +|.. ++
T Consensus 79 ~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~--------l~~----~l~~L~~L~L~~N~l~~lp~~---l~ 141 (622)
T 3g06_A 79 LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTH--------LPA----LPSGLCKLWIFGNQLTSLPVL---PP 141 (622)
T ss_dssp CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCC--------CCC----CCTTCCEEECCSSCCSCCCCC---CT
T ss_pred cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCC--------CCC----CCCCcCEEECCCCCCCcCCCC---CC
Confidence 57899999999999988887 78999999999976543 443 46889999999998 6643 58
Q ss_pred CCcEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecC
Q 016966 162 NLRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGR 240 (379)
Q Consensus 162 ~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 240 (379)
+|++|++++|.++. |. .+.+|+.|++++|.++.+| ..+++|++|++++|.. ..+|. .+++|+.|++.+
T Consensus 142 ~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l-~~l~~----~~~~L~~L~L~~ 210 (622)
T 3g06_A 142 GLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQL-ASLPT----LPSELYKLWAYN 210 (622)
T ss_dssp TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCC-SCCCC----CCTTCCEEECCS
T ss_pred CCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCC-CCCCC----ccchhhEEECcC
Confidence 99999999999888 43 3468999999999999988 5678999999999764 44553 347899999999
Q ss_pred CCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccccccCCcEEEEEeecccccCcc-cccceEEEEe--CC
Q 016966 241 ESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYFSRKTG-IWCRQFRVEL--NN 317 (379)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~l--~~ 317 (379)
|.+...+ . .+++|+.|++++|.++.+|. .+++|+.|+++.+... .++ ..++...|++ +.
T Consensus 211 N~l~~l~-----------~---~~~~L~~L~Ls~N~L~~lp~--~l~~L~~L~Ls~N~L~--~lp~~~~~L~~L~Ls~N~ 272 (622)
T 3g06_A 211 NRLTSLP-----------A---LPSGLKELIVSGNRLTSLPV--LPSELKELMVSGNRLT--SLPMLPSGLLSLSVYRNQ 272 (622)
T ss_dssp SCCSSCC-----------C---CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCS--CCCCCCTTCCEEECCSSC
T ss_pred CcccccC-----------C---CCCCCCEEEccCCccCcCCC--CCCcCcEEECCCCCCC--cCCcccccCcEEeCCCCC
Confidence 8887632 1 24789999999999888883 4688999998665443 222 3344558888 44
Q ss_pred cccchHHHHHHhcccceeeccccc
Q 016966 318 KICLKDSLIVQLQRIEDLELSELQ 341 (379)
Q Consensus 318 ~~~~~~~~~~~~~~L~~L~l~~~~ 341 (379)
...+|..+..+ ++|+.|++++|+
T Consensus 273 L~~lp~~l~~l-~~L~~L~L~~N~ 295 (622)
T 3g06_A 273 LTRLPESLIHL-SSETTVNLEGNP 295 (622)
T ss_dssp CCSCCGGGGGS-CTTCEEECCSCC
T ss_pred CCcCCHHHhhc-cccCEEEecCCC
Confidence 44578777775 999999999998
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.68 E-value=2.8e-17 Score=149.79 Aligned_cols=244 Identities=18% Similarity=0.177 Sum_probs=173.1
Q ss_pred CCccEEEEeCCCCCCCCC-CCCC--CCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC-----CCcccc
Q 016966 87 KHFTSIVLHGIKPNLLPE-VLEC--PQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI-----LPSSLG 158 (379)
Q Consensus 87 ~~l~~L~l~~~~~~~~~~-~~~~--~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-----lp~~i~ 158 (379)
...++++++++.+. +. +..+ ++++.|.+.+|.+... ++.+ ..+++|++|++++|. +|..+.
T Consensus 47 ~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~--------~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~ 115 (336)
T 2ast_B 47 SLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQP--------LAEH-FSPFRVQHMDLSNSVIEVSTLHGILS 115 (336)
T ss_dssp TTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSC--------CCSC-CCCBCCCEEECTTCEECHHHHHHHHT
T ss_pred hhheeeccccccCC--HHHHHhhhhccceEEEcCCcccccc--------chhh-ccCCCCCEEEccCCCcCHHHHHHHHh
Confidence 35788899887653 22 2244 7899999999765432 2223 468999999999997 556678
Q ss_pred CCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCC-cCc--ccchhhcCCCCCCEEeccCC-CCCcc-cChhhhCCCC
Q 016966 159 LLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGS-DIV--KLPVEVGELTWLKLLDLRDC-CFLKV-IPPNILSKLS 231 (379)
Q Consensus 159 ~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~-~l~--~lp~~~~~l~~L~~L~l~~~-~~~~~-~~~~~l~~l~ 231 (379)
.+++|++|++++|.+.. +..++.+++|++|++++| .++ .++..+..+++|++|++++| ..... ++.. +..++
T Consensus 116 ~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~l~ 194 (336)
T 2ast_B 116 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA-VAHVS 194 (336)
T ss_dssp TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH-HHHSC
T ss_pred hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH-HHhcc
Confidence 89999999999999886 788889999999999999 677 47777889999999999998 54443 4443 68899
Q ss_pred -CCcEEEecCCC--CcChhhhhhcccccchHhhcCCCCCcEEEeeccC-CC-CCCccc-cccCCcEEEEEeecccccCcc
Q 016966 232 -HLEELYIGRES--FVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRD-VS-SLPRGL-LLEKLERYSIYIRRYFSRKTG 305 (379)
Q Consensus 232 -~L~~L~l~~~~--~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~-~~~~~~-~~~~L~~L~l~~~~~~~~~~~ 305 (379)
+|++|++++|. +.+.. ++..+..+++|+.|++++|. ++ ..+..+ .+++|+.|+++.+... .+
T Consensus 195 ~~L~~L~l~~~~~~~~~~~---------l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~---~~ 262 (336)
T 2ast_B 195 ETITQLNLSGYRKNLQKSD---------LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI---IP 262 (336)
T ss_dssp TTCCEEECCSCGGGSCHHH---------HHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTC---CG
T ss_pred cCCCEEEeCCCcccCCHHH---------HHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCC---CH
Confidence 99999999984 44222 45677789999999999888 55 444444 6789999988443211 00
Q ss_pred cccceEEEEeCCcccchHHHHHHhcccceeeccccccccccccccccccccCCCCcEEEecCCCCccCCCC
Q 016966 306 IWCRQFRVELNNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLALNPAE 376 (379)
Q Consensus 306 ~~~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 376 (379)
.....+.. +++|+.|++.+|- .-..+.. + . ..|+.|++++|......|.
T Consensus 263 --------------~~~~~l~~-~~~L~~L~l~~~i--~~~~~~~-l-~---~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 263 --------------ETLLELGE-IPTLKTLQVFGIV--PDGTLQL-L-K---EALPHLQINCSHFTTIARP 311 (336)
T ss_dssp --------------GGGGGGGG-CTTCCEEECTTSS--CTTCHHH-H-H---HHSTTSEESCCCSCCTTCS
T ss_pred --------------HHHHHHhc-CCCCCEEeccCcc--CHHHHHH-H-H---hhCcceEEecccCccccCC
Confidence 00112334 5999999999884 2111111 1 1 2355566888888776664
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.67 E-value=6.5e-17 Score=147.38 Aligned_cols=191 Identities=15% Similarity=0.192 Sum_probs=149.7
Q ss_pred CCccEEEEeCCCCCC-CCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccccCCC
Q 016966 87 KHFTSIVLHGIKPNL-LPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGLLS 161 (379)
Q Consensus 87 ~~l~~L~l~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~l~ 161 (379)
++++.+++.++.+.. .+....+++|+.|++++|.+ .....+..+..+++|++|++++|. .+..++.++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l-------~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~ 142 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVI-------EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS 142 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEE-------CHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCT
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCc-------CHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCC
Confidence 689999999998844 44455899999999999654 222133457889999999999998 566788999
Q ss_pred CCcEEEeecC-CCCC---cccccCcCCCcEEEeeCC-cCcc--cchhhcCCC-CCCEEeccCCC--CC-cccChhhhCCC
Q 016966 162 NLRTLSLCSC-GLPD---ISFVGYLKKLEILCLRGS-DIVK--LPVEVGELT-WLKLLDLRDCC--FL-KVIPPNILSKL 230 (379)
Q Consensus 162 ~L~~L~l~~~-~l~~---~~~~~~l~~L~~L~l~~~-~l~~--lp~~~~~l~-~L~~L~l~~~~--~~-~~~~~~~l~~l 230 (379)
+|++|++++| .++. +..+..+++|++|++++| .++. ++..+..++ +|++|++++|. .. ..++.. ++.+
T Consensus 143 ~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~-~~~~ 221 (336)
T 2ast_B 143 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL-VRRC 221 (336)
T ss_dssp TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH-HHHC
T ss_pred CCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH-HhhC
Confidence 9999999999 6775 456888999999999999 8884 677888999 99999999984 33 344544 6889
Q ss_pred CCCcEEEecCCC-CcChhhhhhcccccchHhhcCCCCCcEEEeeccC-CCCCC-ccc-cccCCcEEEEE
Q 016966 231 SHLEELYIGRES-FVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRD-VSSLP-RGL-LLEKLERYSIY 295 (379)
Q Consensus 231 ~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~-~~~-~~~~L~~L~l~ 295 (379)
++|++|++++|. +.+. .+..+..+++|+.|++++|. +.... ..+ .+++|+.|++.
T Consensus 222 ~~L~~L~l~~~~~l~~~----------~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 280 (336)
T 2ast_B 222 PNLVHLDLSDSVMLKND----------CFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 280 (336)
T ss_dssp TTCSEEECTTCTTCCGG----------GGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred CCCCEEeCCCCCcCCHH----------HHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEecc
Confidence 999999999998 4433 36678889999999999885 22111 122 57889998883
No 91
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=6.1e-16 Score=129.84 Aligned_cols=147 Identities=16% Similarity=0.149 Sum_probs=84.4
Q ss_pred CccCCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccccC
Q 016966 84 STIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGL 159 (379)
Q Consensus 84 ~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~ 159 (379)
..++++++|+++++.+..++.+..+++|++|++++|.+.. ++ .+..+++|++|++++|. .|..++.
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~--------~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 110 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATN--------YN--PISGLSNLERLRIMGKDVTSDKIPNLSG 110 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSC--------CG--GGTTCTTCCEEEEECTTCBGGGSCCCTT
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCc--------ch--hhhcCCCCCEEEeECCccCcccChhhcC
Confidence 4456777777777777666655567777777777753322 21 24556666666666665 3455556
Q ss_pred CCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCc-CcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEE
Q 016966 160 LSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSD-IVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEEL 236 (379)
Q Consensus 160 l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~-l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L 236 (379)
+++|++|++++|.+.. +..++.+++|++|++++|. ++.+| .+..+++|++|++++|... .++ . +..+++|++|
T Consensus 111 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~-~~~-~-l~~l~~L~~L 186 (197)
T 4ezg_A 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH-DYR-G-IEDFPKLNQL 186 (197)
T ss_dssp CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC-CCT-T-GGGCSSCCEE
T ss_pred CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc-ChH-H-hccCCCCCEE
Confidence 6666666666666554 4555566666666666664 55555 4555666666666554432 233 1 4555556666
Q ss_pred EecCCCCc
Q 016966 237 YIGRESFV 244 (379)
Q Consensus 237 ~l~~~~~~ 244 (379)
++++|.+.
T Consensus 187 ~l~~N~i~ 194 (197)
T 4ezg_A 187 YAFSQTIG 194 (197)
T ss_dssp EECBC---
T ss_pred EeeCcccC
Confidence 66555543
No 92
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.67 E-value=7e-18 Score=160.55 Aligned_cols=269 Identities=15% Similarity=0.103 Sum_probs=155.1
Q ss_pred ccCCccEEEEeCCCCC-----CCCC-CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCC----ceeEEEecCCC--
Q 016966 85 TIKHFTSIVLHGIKPN-----LLPE-VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMI----EVRVVNLTDMI-- 152 (379)
Q Consensus 85 ~~~~l~~L~l~~~~~~-----~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~----~L~~L~l~~~~-- 152 (379)
.++++++|++++|.+. .++. +..+++|++|++++|.+. ...+..++..++ +|++|++++|.
T Consensus 26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~-------~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 98 (461)
T 1z7x_W 26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG-------DVGVHCVLQGLQTPSCKIQKLSLQNCCLT 98 (461)
T ss_dssp HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCH-------HHHHHHHHHTTCSTTCCCCEEECTTSCCB
T ss_pred hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCC-------hHHHHHHHHHHhhCCCceeEEEccCCCCC
Confidence 3556777777777763 2222 225677777777775542 222333444455 57777777776
Q ss_pred ------CCccccCCCCCcEEEeecCCCCC--ccccc-----CcCCCcEEEeeCCcCcc-----cchhhcCCCCCCEEecc
Q 016966 153 ------LPSSLGLLSNLRTLSLCSCGLPD--ISFVG-----YLKKLEILCLRGSDIVK-----LPVEVGELTWLKLLDLR 214 (379)
Q Consensus 153 ------lp~~i~~l~~L~~L~l~~~~l~~--~~~~~-----~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~ 214 (379)
++..+..+++|++|++++|.+.. +..+. ..++|++|++++|.++. ++..+..+++|++|+++
T Consensus 99 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~ 178 (461)
T 1z7x_W 99 GAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS 178 (461)
T ss_dssp GGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECc
Confidence 25556777777777777777654 33222 24567777777776663 34556667777777777
Q ss_pred CCCCCcccChhh----hCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCC-----ccc-
Q 016966 215 DCCFLKVIPPNI----LSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLP-----RGL- 284 (379)
Q Consensus 215 ~~~~~~~~~~~~----l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-----~~~- 284 (379)
+|......+... ....++|++|++++|.+.... ...++..+..+++|++|++++|.+.... ..+
T Consensus 179 ~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~------~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~ 252 (461)
T 1z7x_W 179 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN------CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLL 252 (461)
T ss_dssp SSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH------HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred CCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHH------HHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHh
Confidence 766433322221 113557777777777766432 1123555666777888888777665321 111
Q ss_pred -cccCCcEEEEEeecccccC---cc----cccceEEEEe-CCccc--chHHHHHHh----cccceeecccccccccccc-
Q 016966 285 -LLEKLERYSIYIRRYFSRK---TG----IWCRQFRVEL-NNKIC--LKDSLIVQL----QRIEDLELSELQEQDVDYF- 348 (379)
Q Consensus 285 -~~~~L~~L~l~~~~~~~~~---~~----~~~~~~~L~l-~~~~~--~~~~~~~~~----~~L~~L~l~~~~~~~l~~~- 348 (379)
.+++|+.|+++.+...... .+ ..++...|++ .+... .+..+...+ ++|++|++++|. ++..
T Consensus 253 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~---l~~~~ 329 (461)
T 1z7x_W 253 HPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS---FTAAC 329 (461)
T ss_dssp STTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC---CBGGG
T ss_pred cCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC---CchHH
Confidence 2567777777544322110 11 1234446777 33322 112232221 588888888887 4433
Q ss_pred ----ccccccccCCCCcEEEecCCCCc
Q 016966 349 ----RNELVKVGSSHLKRLRLEGSDLA 371 (379)
Q Consensus 349 ----~~~~~~~~~~~L~~L~l~~c~~l 371 (379)
+..+ ..+++|++|++++|...
T Consensus 330 ~~~l~~~l--~~~~~L~~L~Ls~n~i~ 354 (461)
T 1z7x_W 330 CSHFSSVL--AQNRFLLELQISNNRLE 354 (461)
T ss_dssp HHHHHHHH--HHCSSCCEEECCSSBCH
T ss_pred HHHHHHHH--hhCCCccEEEccCCccc
Confidence 2222 23789999999988654
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.66 E-value=2.6e-15 Score=131.02 Aligned_cols=153 Identities=18% Similarity=0.206 Sum_probs=129.9
Q ss_pred ccCCccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCcccc
Q 016966 85 TIKHFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLG 158 (379)
Q Consensus 85 ~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~ 158 (379)
..+.++.|++++|.+..++. +..+++|+.|++++|.+. .+++..|..+++|++|++++|. .+..+.
T Consensus 33 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 104 (251)
T 3m19_A 33 IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ--------TLSAGVFDDLTELGTLGLANNQLASLPLGVFD 104 (251)
T ss_dssp CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC--------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC--------ccCHhHhccCCcCCEEECCCCcccccChhHhc
Confidence 45789999999999976664 458999999999997653 4566667899999999999998 445678
Q ss_pred CCCCCcEEEeecCCCCC-c-ccccCcCCCcEEEeeCCcCcccch-hhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcE
Q 016966 159 LLSNLRTLSLCSCGLPD-I-SFVGYLKKLEILCLRGSDIVKLPV-EVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEE 235 (379)
Q Consensus 159 ~l~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 235 (379)
.+++|++|++++|.++. + ..+..+++|++|++++|.++.+|. .+..+++|++|++++|... .++...+..+++|+.
T Consensus 105 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~ 183 (251)
T 3m19_A 105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQT 183 (251)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCE
T ss_pred ccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC-ccCHHHHhCCCCCCE
Confidence 99999999999999998 4 457899999999999999999887 5889999999999997755 555444899999999
Q ss_pred EEecCCCCcCh
Q 016966 236 LYIGRESFVDW 246 (379)
Q Consensus 236 L~l~~~~~~~~ 246 (379)
|++.+|.+...
T Consensus 184 L~l~~N~~~c~ 194 (251)
T 3m19_A 184 ITLFGNQFDCS 194 (251)
T ss_dssp EECCSCCBCTT
T ss_pred EEeeCCceeCC
Confidence 99999998653
No 94
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.66 E-value=1.8e-16 Score=154.88 Aligned_cols=187 Identities=20% Similarity=0.186 Sum_probs=153.5
Q ss_pred CCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCCCC
Q 016966 87 KHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLSNL 163 (379)
Q Consensus 87 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~~L 163 (379)
..+..+.+..+.+..+.....+++|+.|.+.+|.+.. ++. +..+++|+.|+|++|. ++. +..+++|
T Consensus 21 ~~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~--------l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L 89 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKS--------VQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNL 89 (605)
T ss_dssp HHHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCC--------CTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTC
T ss_pred HHHHHHhccCCCcccccchhcCCCCCEEECcCCCCCC--------ChH--HccCCCCCEEEeeCCCCCCChh-hccCCCC
Confidence 3444455555555555555578899999999976543 343 6789999999999998 554 8999999
Q ss_pred cEEEeecCCCCCcccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCC
Q 016966 164 RTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESF 243 (379)
Q Consensus 164 ~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 243 (379)
++|++++|.+..++.+..+++|++|++++|.+..++ .+..+++|+.|++++|.... ++. ++.+++|+.|++++|.+
T Consensus 90 ~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~-l~~--l~~l~~L~~L~Ls~N~l 165 (605)
T 1m9s_A 90 GWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITD-ITV--LSRLTKLDTLSLEDNQI 165 (605)
T ss_dssp CEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCC-CGG--GGSCTTCSEEECCSSCC
T ss_pred CEEECcCCCCCCChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCC-chh--hcccCCCCEEECcCCcC
Confidence 999999999998778999999999999999999886 68999999999999987554 432 79999999999999999
Q ss_pred cChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccccccCCcEEEEEeeccc
Q 016966 244 VDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGLLLEKLERYSIYIRRYF 300 (379)
Q Consensus 244 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 300 (379)
.+.. + +..+++|+.|++++|.+..++....+++|+.|+++.+...
T Consensus 166 ~~~~-----------~-l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 166 SDIV-----------P-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CCCG-----------G-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEEE
T ss_pred CCch-----------h-hccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCcCc
Confidence 8742 3 8899999999999999998875447899999999766554
No 95
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.66 E-value=1.1e-15 Score=128.31 Aligned_cols=148 Identities=17% Similarity=0.241 Sum_probs=103.0
Q ss_pred CCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC--CCccccCCCCCcEEEeecCCCCC--cccccCc
Q 016966 107 ECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI--LPSSLGLLSNLRTLSLCSCGLPD--ISFVGYL 182 (379)
Q Consensus 107 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--lp~~i~~l~~L~~L~l~~~~l~~--~~~~~~l 182 (379)
.+++|+.|.+++|.+. .++. +..+++|++|++++|. .+..+..+++|++|++++|.+.. +..++.+
T Consensus 42 ~l~~L~~L~l~~n~i~--------~l~~--l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 111 (197)
T 4ezg_A 42 QMNSLTYITLANINVT--------DLTG--IEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGL 111 (197)
T ss_dssp HHHTCCEEEEESSCCS--------CCTT--GGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTC
T ss_pred hcCCccEEeccCCCcc--------ChHH--HhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCC
Confidence 5677888888876543 3342 4667778888887777 44467777788888888877775 6777777
Q ss_pred CCCcEEEeeCCcCcc-cchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhh
Q 016966 183 KKLEILCLRGSDIVK-LPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEEL 261 (379)
Q Consensus 183 ~~L~~L~l~~~~l~~-lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l 261 (379)
++|++|++++|.++. .|..+..+++|++|++++|..+..++. +..+++|+.|++++|.+.+. ..+
T Consensus 112 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~~------------~~l 177 (197)
T 4ezg_A 112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDY------------RGI 177 (197)
T ss_dssp TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCCC------------TTG
T ss_pred CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcCh------------HHh
Confidence 788888888877773 556677777888888877665556653 67777788887777777652 256
Q ss_pred cCCCCCcEEEeeccCCC
Q 016966 262 KHLPNLTSLEVHVRDVS 278 (379)
Q Consensus 262 ~~l~~L~~L~l~~~~~~ 278 (379)
..+++|+.|++++|.+.
T Consensus 178 ~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 178 EDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp GGCSSCCEEEECBC---
T ss_pred ccCCCCCEEEeeCcccC
Confidence 66777777777777654
No 96
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.64 E-value=2.3e-16 Score=154.88 Aligned_cols=81 Identities=11% Similarity=0.037 Sum_probs=42.2
Q ss_pred ccCCccEEEEeCCCCCCCC-----CCC-CCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCc
Q 016966 85 TIKHFTSIVLHGIKPNLLP-----EVL-ECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPS 155 (379)
Q Consensus 85 ~~~~l~~L~l~~~~~~~~~-----~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~ 155 (379)
.++++++|++++|.+.... ... .+++|++|++++|.+... .......++.++++|++|++++|. +|.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~----~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~ 237 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKI----SPKDLETIARNCRSLVSVKVGDFEILELVG 237 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSC----CHHHHHHHHHHCTTCCEEECSSCBGGGGHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCcc----CHHHHHHHHhhCCCCcEEeccCccHHHHHH
Confidence 3456677777766542211 111 566677777766544321 111122334556777777777665 444
Q ss_pred cccCCCCCcEEEee
Q 016966 156 SLGLLSNLRTLSLC 169 (379)
Q Consensus 156 ~i~~l~~L~~L~l~ 169 (379)
.+..+++|++|+++
T Consensus 238 ~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 238 FFKAAANLEEFCGG 251 (592)
T ss_dssp HHHHCTTCCEEEEC
T ss_pred HHhhhhHHHhhccc
Confidence 44555555555554
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.64 E-value=2.5e-15 Score=127.16 Aligned_cols=168 Identities=19% Similarity=0.261 Sum_probs=118.1
Q ss_pred cEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CC-ccccCCCCCcE
Q 016966 90 TSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LP-SSLGLLSNLRT 165 (379)
Q Consensus 90 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp-~~i~~l~~L~~ 165 (379)
+.+...++.+..+|.. ..++|+.|++++|.+ ..+++..|..+++|++|++++|. +| ..+..+++|++
T Consensus 10 ~~v~c~~~~l~~~p~~-~~~~l~~L~l~~n~l--------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 80 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTG-IPAQTTYLDLETNSL--------KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTY 80 (208)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCSEEECCSSCC--------CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CEEEecCCCccCCCCC-CCCCCcEEEcCCCcc--------CcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCE
Confidence 3555566666556532 245788888888654 34555667778888888888877 43 34577888888
Q ss_pred EEeecCCCCC-c-ccccCcCCCcEEEeeCCcCcccchh-hcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCC
Q 016966 166 LSLCSCGLPD-I-SFVGYLKKLEILCLRGSDIVKLPVE-VGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRES 242 (379)
Q Consensus 166 L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 242 (379)
|++++|.++. + ..+..+++|++|++++|.++.+|.. +..+++|++|++++|... .++...+..+++|+.|++++|.
T Consensus 81 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 81 LNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCC
T ss_pred EECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCccEEEecCCC
Confidence 8888888877 4 4467888888888888888877754 677888888888886644 4554446788888888888776
Q ss_pred CcChhhhhhcccccchHhhcCCCCCcEEEeeccCCC-CCCccc
Q 016966 243 FVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVS-SLPRGL 284 (379)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~ 284 (379)
+.. .+++|+.|++..|.++ .+|..+
T Consensus 160 ~~~-----------------~~~~l~~L~~~~n~~~g~ip~~~ 185 (208)
T 2o6s_A 160 WDC-----------------TCPGIRYLSEWINKHSGVVRNSA 185 (208)
T ss_dssp BCC-----------------CTTTTHHHHHHHHHCTTTBBCTT
T ss_pred eec-----------------CCCCHHHHHHHHHhCCceeeccC
Confidence 543 3456777777777666 566543
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.61 E-value=1.7e-15 Score=146.55 Aligned_cols=134 Identities=23% Similarity=0.321 Sum_probs=79.0
Q ss_pred CccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCCCCcEEEeecCCCCC-cccccCcCCC
Q 016966 110 QLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLSNLRTLSLCSCGLPD-ISFVGYLKKL 185 (379)
Q Consensus 110 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~l~~-~~~~~~l~~L 185 (379)
+++.|++++|.+ ..+|..++ ++|++|++++|. +| ..+++|++|++++|.++. |. +.. +|
T Consensus 60 ~L~~L~Ls~n~L--------~~lp~~l~---~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L 122 (571)
T 3cvr_A 60 QFSELQLNRLNL--------SSLPDNLP---PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SL 122 (571)
T ss_dssp TCSEEECCSSCC--------SCCCSCCC---TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TC
T ss_pred CccEEEeCCCCC--------CccCHhHc---CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CC
Confidence 666666666543 22444332 456666666666 44 345666666666666666 44 433 66
Q ss_pred cEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCC
Q 016966 186 EILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLP 265 (379)
Q Consensus 186 ~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~ 265 (379)
++|++++|.++.+|. .+++|++|++++|... .+|. .+++|+.|++++|.+...+ . +. +
T Consensus 123 ~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~L~~lp-----------~-l~--~ 180 (571)
T 3cvr_A 123 KHLDVDNNQLTMLPE---LPALLEYINADNNQLT-MLPE----LPTSLEVLSVRNNQLTFLP-----------E-LP--E 180 (571)
T ss_dssp CEEECCSSCCSCCCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSCCC-----------C-CC--T
T ss_pred CEEECCCCcCCCCCC---cCccccEEeCCCCccC-cCCC----cCCCcCEEECCCCCCCCcc-----------h-hh--C
Confidence 666666666666665 5666666666665533 3443 3556666666666665532 2 33 5
Q ss_pred CCcEEEeeccCCCCCCc
Q 016966 266 NLTSLEVHVRDVSSLPR 282 (379)
Q Consensus 266 ~L~~L~l~~~~~~~~~~ 282 (379)
+|+.|++++|.++.+|.
T Consensus 181 ~L~~L~Ls~N~L~~lp~ 197 (571)
T 3cvr_A 181 SLEALDVSTNLLESLPA 197 (571)
T ss_dssp TCCEEECCSSCCSSCCC
T ss_pred CCCEEECcCCCCCchhh
Confidence 66666666666666655
No 99
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.61 E-value=4.7e-16 Score=136.61 Aligned_cols=170 Identities=17% Similarity=0.147 Sum_probs=110.6
Q ss_pred ccCCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCC
Q 016966 85 TIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLS 161 (379)
Q Consensus 85 ~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~ 161 (379)
.+.++..+.+..+.+..++.+..+++|+.|++++|.+.+ ++ .+..+++|++|++++|. ++. +..++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~--------l~--~l~~l~~L~~L~L~~N~i~~~~~-l~~l~ 85 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQS--------LA--GMQFFTNLKELHLSHNQISDLSP-LKDLT 85 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCC--------CT--TGGGCTTCCEEECCSSCCCCCGG-GTTCS
T ss_pred HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCccc--------ch--HHhhCCCCCEEECCCCccCCChh-hccCC
Confidence 344555566666666555555567777777777755432 33 24567777777777776 443 67777
Q ss_pred CCcEEEeecCCCCCcccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCC
Q 016966 162 NLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRE 241 (379)
Q Consensus 162 ~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 241 (379)
+|++|++++|.++..+.+.. ++|++|++++|.++.++ .+..+++|++|++++|.. ..++. ++.+++|+.|++++|
T Consensus 86 ~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i-~~~~~--l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 86 KLEELSVNRNRLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKL-KSIVM--LGFLSKLEVLDLHGN 160 (263)
T ss_dssp SCCEEECCSSCCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCC-CBCGG--GGGCTTCCEEECTTS
T ss_pred CCCEEECCCCccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcC-CCChH--HccCCCCCEEECCCC
Confidence 77777777777766323333 77777777777777765 477777777777777654 33442 567777777777777
Q ss_pred CCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCc
Q 016966 242 SFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPR 282 (379)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 282 (379)
.+.+. ..+..+++|+.|++++|.+...|.
T Consensus 161 ~i~~~------------~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 161 EITNT------------GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp CCCBC------------TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred cCcch------------HHhccCCCCCEEeCCCCcccCCcc
Confidence 77651 456667777777777777665443
No 100
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.61 E-value=1.2e-14 Score=124.81 Aligned_cols=149 Identities=21% Similarity=0.284 Sum_probs=115.7
Q ss_pred CCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CC-ccccCCCC
Q 016966 87 KHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LP-SSLGLLSN 162 (379)
Q Consensus 87 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp-~~i~~l~~ 162 (379)
-..+.++.+++.+..+|... .++|+.|++++|.+. .+++..|..+++|++|++++|. +| ..+..+++
T Consensus 19 Cs~~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~i~--------~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~ 89 (229)
T 3e6j_A 19 CSGTTVDCRSKRHASVPAGI-PTNAQILYLHDNQIT--------KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQ 89 (229)
T ss_dssp EETTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCC--------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred EeCCEeEccCCCcCccCCCC-CCCCCEEEcCCCccC--------ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCC
Confidence 34567888888777777633 378999999997653 3444557888999999999988 44 34678889
Q ss_pred CcEEEeecCCCCC-c-ccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecC
Q 016966 163 LRTLSLCSCGLPD-I-SFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGR 240 (379)
Q Consensus 163 L~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 240 (379)
|++|++++|.++. + ..+..+++|++|++++|.++.+|..+..+++|++|++++|.. ..++...+..+++|+.|++.+
T Consensus 90 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 90 LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQL-KSIPHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECTT
T ss_pred cCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcC-CccCHHHHhCCCCCCEEEeeC
Confidence 9999999998888 4 446788899999999998888888888889999999988654 455555578888888888888
Q ss_pred CCCcC
Q 016966 241 ESFVD 245 (379)
Q Consensus 241 ~~~~~ 245 (379)
|.+..
T Consensus 169 N~~~c 173 (229)
T 3e6j_A 169 NPWDC 173 (229)
T ss_dssp SCBCT
T ss_pred CCccC
Confidence 87764
No 101
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.61 E-value=1.2e-16 Score=147.17 Aligned_cols=199 Identities=14% Similarity=0.089 Sum_probs=120.1
Q ss_pred cCCccEEEEeCCCCCCCCC------CCCCC-CccEEEeecCCCCCCCCCCCcccChhhhhC----C-CceeEEEecCCC-
Q 016966 86 IKHFTSIVLHGIKPNLLPE------VLECP-QLELLFIRGGGRDDPWETSPVTIPDNFFKS----M-IEVRVVNLTDMI- 152 (379)
Q Consensus 86 ~~~l~~L~l~~~~~~~~~~------~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~----l-~~L~~L~l~~~~- 152 (379)
.+++++|++++|.+...+. +..++ +|++|++++|.+.+ .....|.. . ++|++|++++|.
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~--------~~~~~l~~~l~~~~~~L~~L~Ls~n~l 92 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGF--------KNSDELVQILAAIPANVTSLNLSGNFL 92 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGG--------SCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCH--------HHHHHHHHHHhccCCCccEEECcCCcC
Confidence 4457888888887755442 23566 78888888865433 22222222 2 778888888877
Q ss_pred ---CCc----cccCC-CCCcEEEeecCCCCC--cccc----cC-cCCCcEEEeeCCcCc-----ccchhhcCCC-CCCEE
Q 016966 153 ---LPS----SLGLL-SNLRTLSLCSCGLPD--ISFV----GY-LKKLEILCLRGSDIV-----KLPVEVGELT-WLKLL 211 (379)
Q Consensus 153 ---lp~----~i~~l-~~L~~L~l~~~~l~~--~~~~----~~-l~~L~~L~l~~~~l~-----~lp~~~~~l~-~L~~L 211 (379)
.+. .+..+ ++|++|++++|.+.. +..+ .. .++|++|++++|.++ .++..+..++ +|++|
T Consensus 93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L 172 (362)
T 3goz_A 93 SYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL 172 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred ChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEe
Confidence 222 24444 678888888887765 2332 23 257888888888776 4444555555 78888
Q ss_pred eccCCCCCcccChh---hhCCC-CCCcEEEecCCCCcChhhhhhcccccchHhhcC-CCCCcEEEeeccCCCCCCccc--
Q 016966 212 DLRDCCFLKVIPPN---ILSKL-SHLEELYIGRESFVDWEEEVEGVKNASLEELKH-LPNLTSLEVHVRDVSSLPRGL-- 284 (379)
Q Consensus 212 ~l~~~~~~~~~~~~---~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~~-- 284 (379)
++++|......+.. .+... ++|++|++++|.+.... ...++..+.. .++|+.|++++|.+...+...
T Consensus 173 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~------~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 246 (362)
T 3goz_A 173 NLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKS------YAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLK 246 (362)
T ss_dssp ECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC------HHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHH
T ss_pred eecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH------HHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHH
Confidence 88887654443321 13444 47888888877776532 1223445544 347888888887777544311
Q ss_pred ----cccCCcEEEEEeec
Q 016966 285 ----LLEKLERYSIYIRR 298 (379)
Q Consensus 285 ----~~~~L~~L~l~~~~ 298 (379)
.+++|+.|+++.+.
T Consensus 247 ~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 247 LLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp HTTTTTTTCSEEEEEHHH
T ss_pred HHHhcCCCccEEEeccCC
Confidence 35677777775444
No 102
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.61 E-value=1.1e-14 Score=124.40 Aligned_cols=147 Identities=21% Similarity=0.204 Sum_probs=106.0
Q ss_pred cEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccccCCCCCcE
Q 016966 90 TSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGLLSNLRT 165 (379)
Q Consensus 90 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~l~~L~~ 165 (379)
++++++++.+..+|... .+.++.|++++|.+.. ..+..+|..+++|++|++++|. .+..+..+++|++
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~-------~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~ 85 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTV-------LEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNE 85 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCE-------ECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCc-------cCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCE
Confidence 57888888887777532 3456788888866422 2244556778888888888887 4446778888888
Q ss_pred EEeecCCCCC-c-ccccCcCCCcEEEeeCCcCccc-chhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCC
Q 016966 166 LSLCSCGLPD-I-SFVGYLKKLEILCLRGSDIVKL-PVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRES 242 (379)
Q Consensus 166 L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 242 (379)
|++++|.++. + ..+..+++|++|++++|.++.+ |..+..+++|++|++++|......|.. +..+++|+.|++++|.
T Consensus 86 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 86 ILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGA-FDTLHSLSTLNLLANP 164 (220)
T ss_dssp EECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTT-TTTCTTCCEEECCSCC
T ss_pred EECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHH-hcCCCCCCEEEecCcC
Confidence 8888888777 3 4577788888888888888766 456777888888888886655444544 6778888888888877
Q ss_pred CcC
Q 016966 243 FVD 245 (379)
Q Consensus 243 ~~~ 245 (379)
+..
T Consensus 165 l~c 167 (220)
T 2v70_A 165 FNC 167 (220)
T ss_dssp EEC
T ss_pred CcC
Confidence 654
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.59 E-value=1.7e-14 Score=123.13 Aligned_cols=146 Identities=21% Similarity=0.272 Sum_probs=106.3
Q ss_pred cEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC----CCccccCCCCCcE
Q 016966 90 TSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGLLSNLRT 165 (379)
Q Consensus 90 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~l~~L~~ 165 (379)
+.++.+++.+..+|.... +.++.|++++|.+ ..+++..|..+++|++|++++|. .|..+..+++|++
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i--------~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~ 84 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTI--------KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNS 84 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCC--------CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCE
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcC--------CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCE
Confidence 467777777777775332 6788888888653 34555567788888888888887 5677888888888
Q ss_pred EEeecCCCCC-c-ccccCcCCCcEEEeeCCcCcccc-hhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCC
Q 016966 166 LSLCSCGLPD-I-SFVGYLKKLEILCLRGSDIVKLP-VEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRES 242 (379)
Q Consensus 166 L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 242 (379)
|++++|.++. + ..+..+++|++|++++|.++.++ ..+..+++|++|++++|... .++...+..+++|+.|++.+|.
T Consensus 85 L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 85 LVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC-EECHHHHhCCCCCCEEEeCCCC
Confidence 8888888877 4 34577888888888888888664 46777888888888886644 3444346778888888888877
Q ss_pred CcC
Q 016966 243 FVD 245 (379)
Q Consensus 243 ~~~ 245 (379)
+..
T Consensus 164 ~~c 166 (220)
T 2v9t_B 164 FIC 166 (220)
T ss_dssp EEC
T ss_pred cCC
Confidence 654
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.59 E-value=2e-14 Score=139.09 Aligned_cols=173 Identities=18% Similarity=0.237 Sum_probs=115.7
Q ss_pred CccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCCCCc
Q 016966 88 HFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLSNLR 164 (379)
Q Consensus 88 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~~L~ 164 (379)
+++.|++++|.+..+|... +++|+.|++++|.+. .+| ..+++|++|++++|. +|. +.. +|+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~--------~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~ 123 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALI--------SLP----ELPASLEYLDACDNRLSTLPE-LPA--SLK 123 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCS--------CCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCC
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCc--------ccc----cccCCCCEEEccCCCCCCcch-hhc--CCC
Confidence 6777888777776666533 367888888876543 344 235777888888777 555 443 778
Q ss_pred EEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCC
Q 016966 165 TLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESF 243 (379)
Q Consensus 165 ~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 243 (379)
+|++++|.++. |. .+++|++|++++|.++.+|. .+++|++|++++|.... +|. ++ ++|+.|++++|.+
T Consensus 124 ~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~-lp~--l~--~~L~~L~Ls~N~L 192 (571)
T 3cvr_A 124 HLDVDNNQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF-LPE--LP--ESLEALDVSTNLL 192 (571)
T ss_dssp EEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC--CC--TTCCEEECCSSCC
T ss_pred EEECCCCcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC-cch--hh--CCCCEEECcCCCC
Confidence 88888887777 44 56778888888887777775 56778888887766433 665 34 7788888887777
Q ss_pred cChhhhhhcccccchHhhcC-----CCCCcEEEeeccCCCCCCccc-cccCCcEEEEEeecc
Q 016966 244 VDWEEEVEGVKNASLEELKH-----LPNLTSLEVHVRDVSSLPRGL-LLEKLERYSIYIRRY 299 (379)
Q Consensus 244 ~~~~~~~~~~~~~~~~~l~~-----l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~ 299 (379)
...+ . +.. .+.|+.|++++|.++.+|..+ .+++|+.|+++.+..
T Consensus 193 ~~lp-----------~-~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 193 ESLP-----------A-VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp SSCC-----------C-CC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred Cchh-----------h-HHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcC
Confidence 7533 2 222 122377888888777777765 577777777754443
No 105
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.59 E-value=1.1e-15 Score=149.94 Aligned_cols=265 Identities=15% Similarity=0.084 Sum_probs=136.6
Q ss_pred ccCCccEEEEeCCCCCCCC-----CC-CCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC------
Q 016966 85 TIKHFTSIVLHGIKPNLLP-----EV-LECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI------ 152 (379)
Q Consensus 85 ~~~~l~~L~l~~~~~~~~~-----~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~------ 152 (379)
..+++++|+++.+.+..+. .. ..+++|++|.+.+|.+ ..++ ..+..+++|+.|+++...
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~--------~~l~-~~~~~~~~L~~L~l~~~~~~~~~~ 260 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI--------LELV-GFFKAAANLEEFCGGSLNEDIGMP 260 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG--------GGGH-HHHHHCTTCCEEEECBCCCCTTCT
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH--------HHHH-HHHhhhhHHHhhcccccccccchH
Confidence 4678899999888775332 22 2678899998888543 2233 345666777777765432
Q ss_pred -CCccccCCCCCcEEEeecCCCCC-cccccCcCCCcEEEeeCCcCc--------------------------ccchhhcC
Q 016966 153 -LPSSLGLLSNLRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIV--------------------------KLPVEVGE 204 (379)
Q Consensus 153 -lp~~i~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~--------------------------~lp~~~~~ 204 (379)
.+..+..+++|+.|+++.+.... +..+..+++|++|++++|.++ .++.....
T Consensus 261 ~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~ 340 (592)
T 3ogk_B 261 EKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQY 340 (592)
T ss_dssp TSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHH
T ss_pred HHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHh
Confidence 22233444445554444433222 333344444555555444433 22222234
Q ss_pred CCCCCEEeccC----------CCCCccc-ChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcC-CCCCcEEEe
Q 016966 205 LTWLKLLDLRD----------CCFLKVI-PPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKH-LPNLTSLEV 272 (379)
Q Consensus 205 l~~L~~L~l~~----------~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l 272 (379)
+++|++|++++ |+..... .......+++|+.|++..+.+.+. .+..+.. +++|+.|++
T Consensus 341 ~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~----------~~~~l~~~~~~L~~L~l 410 (592)
T 3ogk_B 341 CKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNE----------SLESIGTYLKNLCDFRL 410 (592)
T ss_dssp CTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHH----------HHHHHHHHCCSCCEEEE
T ss_pred CCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHH----------HHHHHHhhCCCCcEEEE
Confidence 44555555552 2222211 111123355555555544444332 2334433 677777777
Q ss_pred e----ccCCCCCCcc------c-cccCCcEEEEEeeccc-----ccCc-ccccceEEEEe-CCccc---chHHHHHHhcc
Q 016966 273 H----VRDVSSLPRG------L-LLEKLERYSIYIRRYF-----SRKT-GIWCRQFRVEL-NNKIC---LKDSLIVQLQR 331 (379)
Q Consensus 273 ~----~~~~~~~~~~------~-~~~~L~~L~l~~~~~~-----~~~~-~~~~~~~~L~l-~~~~~---~~~~~~~~~~~ 331 (379)
. ++.++..|.. + .+++|+.|+++.+... .... ...++...|.+ .+... ++..+.. +++
T Consensus 411 ~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~~ 489 (592)
T 3ogk_B 411 VLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRG-CPN 489 (592)
T ss_dssp EECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTC-CTT
T ss_pred eecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhc-Ccc
Confidence 5 4455544322 1 4677888877542211 0001 11344557777 33322 2232333 488
Q ss_pred cceeeccccccccccccccccccccCCCCcEEEecCCCCcc
Q 016966 332 IEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDLAL 372 (379)
Q Consensus 332 L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~ 372 (379)
|++|++++|. ++...-......+++|++|++++|+...
T Consensus 490 L~~L~l~~n~---l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 490 LQKLEMRGCC---FSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp CCEEEEESCC---CBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred cCeeeccCCC---CcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 8999998887 3332111112348899999999998543
No 106
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.58 E-value=3.6e-16 Score=144.01 Aligned_cols=234 Identities=13% Similarity=0.071 Sum_probs=153.5
Q ss_pred EEEeCCCCC-CCCCCCCC-CCccEEEeecCCCCCCCCCCCcccCh----hhhhCCC-ceeEEEecCCC----CCccccCC
Q 016966 92 IVLHGIKPN-LLPEVLEC-PQLELLFIRGGGRDDPWETSPVTIPD----NFFKSMI-EVRVVNLTDMI----LPSSLGLL 160 (379)
Q Consensus 92 L~l~~~~~~-~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~----lp~~i~~l 160 (379)
+.++.+.+. .+|.+... ++|+.|++++|.+. ..+. ..|..++ +|++|++++|. .+..+..+
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~--------~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 74 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLY--------SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQI 74 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGG--------GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCC--------hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHH
Confidence 345566653 34444444 45999999997653 3343 5567888 89999999998 34444443
Q ss_pred -----CCCcEEEeecCCCCC--ccc----ccCc-CCCcEEEeeCCcCcccch-----hhcC-CCCCCEEeccCCCCCcc-
Q 016966 161 -----SNLRTLSLCSCGLPD--ISF----VGYL-KKLEILCLRGSDIVKLPV-----EVGE-LTWLKLLDLRDCCFLKV- 221 (379)
Q Consensus 161 -----~~L~~L~l~~~~l~~--~~~----~~~l-~~L~~L~l~~~~l~~lp~-----~~~~-l~~L~~L~l~~~~~~~~- 221 (379)
++|++|++++|.+.. +.. +..+ ++|++|++++|.++..+. .+.. .++|++|++++|.....
T Consensus 75 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 154 (362)
T 3goz_A 75 LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS 154 (362)
T ss_dssp HHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC
T ss_pred HhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH
Confidence 899999999999876 333 4444 799999999998886553 2344 36899999999876532
Q ss_pred ---cChhhhCCCC-CCcEEEecCCCCcChhhhhhcccccchHhhcCC-CCCcEEEeeccCCCC-----CCccc-c-ccCC
Q 016966 222 ---IPPNILSKLS-HLEELYIGRESFVDWEEEVEGVKNASLEELKHL-PNLTSLEVHVRDVSS-----LPRGL-L-LEKL 289 (379)
Q Consensus 222 ---~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~-----~~~~~-~-~~~L 289 (379)
++.. +..++ +|++|++++|.+.... ...+...+..+ ++|+.|++++|.+.. ++..+ . .++|
T Consensus 155 ~~~l~~~-l~~~~~~L~~L~Ls~n~l~~~~------~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L 227 (362)
T 3goz_A 155 SDELIQI-LAAIPANVNSLNLRGNNLASKN------CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHV 227 (362)
T ss_dssp HHHHHHH-HHTSCTTCCEEECTTSCGGGSC------HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTC
T ss_pred HHHHHHH-HhcCCccccEeeecCCCCchhh------HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCc
Confidence 2332 45565 8999999999887543 11233455666 489999999998886 34433 2 4589
Q ss_pred cEEEEEeecccccC-------cccccceEEEEe-CCcc-c--------chHHHHHHhcccceeeccccc
Q 016966 290 ERYSIYIRRYFSRK-------TGIWCRQFRVEL-NNKI-C--------LKDSLIVQLQRIEDLELSELQ 341 (379)
Q Consensus 290 ~~L~l~~~~~~~~~-------~~~~~~~~~L~l-~~~~-~--------~~~~~~~~~~~L~~L~l~~~~ 341 (379)
+.|+++.+...... ....++...|.+ .+.. . ++..+.. +++|+.|++++|.
T Consensus 228 ~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~-l~~L~~LdL~~N~ 295 (362)
T 3goz_A 228 VSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPN-IQKIILVDKNGKE 295 (362)
T ss_dssp CEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTT-CCEEEEECTTSCB
T ss_pred eEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhcc-CCceEEEecCCCc
Confidence 99999666543211 133345557888 2221 1 1112223 3678889999887
No 107
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.58 E-value=9.8e-15 Score=123.51 Aligned_cols=147 Identities=20% Similarity=0.229 Sum_probs=123.3
Q ss_pred CccCCccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CC-ccc
Q 016966 84 STIKHFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LP-SSL 157 (379)
Q Consensus 84 ~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp-~~i 157 (379)
...+++++|++++|.+..++. +..+++|+.|++++|.+ ..++...|..+++|++|++++|. +| ..+
T Consensus 25 ~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 96 (208)
T 2o6s_A 25 GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL--------QSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVF 96 (208)
T ss_dssp CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC--------CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCcc--------CccChhhcCCCCCcCEEECCCCcCCccCHhHh
Confidence 346789999999999977776 44899999999999764 45677778899999999999998 44 347
Q ss_pred cCCCCCcEEEeecCCCCC-c-ccccCcCCCcEEEeeCCcCcccchh-hcCCCCCCEEeccCCCCCcccChhhhCCCCCCc
Q 016966 158 GLLSNLRTLSLCSCGLPD-I-SFVGYLKKLEILCLRGSDIVKLPVE-VGELTWLKLLDLRDCCFLKVIPPNILSKLSHLE 234 (379)
Q Consensus 158 ~~l~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 234 (379)
..+++|++|++++|.+.. + ..+..+++|++|++++|.++.+|.. +..+++|++|++++|.. .+.+++|+
T Consensus 97 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~--------~~~~~~l~ 168 (208)
T 2o6s_A 97 DKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW--------DCTCPGIR 168 (208)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB--------CCCTTTTH
T ss_pred cCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe--------ecCCCCHH
Confidence 899999999999999988 4 4578999999999999999988865 78899999999999753 35667888
Q ss_pred EEEecCCCCcCh
Q 016966 235 ELYIGRESFVDW 246 (379)
Q Consensus 235 ~L~l~~~~~~~~ 246 (379)
.|.++.|.+.+.
T Consensus 169 ~L~~~~n~~~g~ 180 (208)
T 2o6s_A 169 YLSEWINKHSGV 180 (208)
T ss_dssp HHHHHHHHCTTT
T ss_pred HHHHHHHhCCce
Confidence 888887777654
No 108
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.58 E-value=3.4e-14 Score=130.15 Aligned_cols=192 Identities=18% Similarity=0.124 Sum_probs=149.9
Q ss_pred CCccCCccEEEEeCCCC-CCCCC--CCCCCCccEE-EeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CC-
Q 016966 83 GSTIKHFTSIVLHGIKP-NLLPE--VLECPQLELL-FIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LP- 154 (379)
Q Consensus 83 ~~~~~~l~~L~l~~~~~-~~~~~--~~~~~~L~~L-~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp- 154 (379)
+..++++++|++++|.+ +.++. +..+++++.+ .+..|. ...+++..|..+++|++|++++|. .|
T Consensus 50 f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~--------l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~ 121 (350)
T 4ay9_X 50 FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN--------LLYINPEAFQNLPNLQYLLISNTGIKHLPD 121 (350)
T ss_dssp STTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT--------CCEECTTSBCCCTTCCEEEEEEECCSSCCC
T ss_pred HcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc--------ccccCchhhhhccccccccccccccccCCc
Confidence 36688999999999987 54554 3478887764 455544 566777788999999999999998 33
Q ss_pred ccccCCCCCcEEEeecC-CCCC-c-ccccCc-CCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCC
Q 016966 155 SSLGLLSNLRTLSLCSC-GLPD-I-SFVGYL-KKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKL 230 (379)
Q Consensus 155 ~~i~~l~~L~~L~l~~~-~l~~-~-~~~~~l-~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l 230 (379)
..+....++.+|++.++ .+.. + ..+..+ ..+++|++++|+++.+|..+....+|+++++.+++.++.+|...++.+
T Consensus 122 ~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l 201 (350)
T 4ay9_X 122 VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGA 201 (350)
T ss_dssp CTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTE
T ss_pred hhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccC
Confidence 34456667888999765 4666 3 445555 479999999999999999888889999999998888999998878999
Q ss_pred CCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEee-ccCCCCCCccccccCCcEEEEE
Q 016966 231 SHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVH-VRDVSSLPRGLLLEKLERYSIY 295 (379)
Q Consensus 231 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~L~~L~l~ 295 (379)
++|+.|++++|.+...+ . ..+.+|+.|.+. .+.+..+|..-.+++|+.+++.
T Consensus 202 ~~L~~LdLs~N~l~~lp-----------~--~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 202 SGPVILDISRTRIHSLP-----------S--YGLENLKKLRARSTYNLKKLPTLEKLVALMEASLT 254 (350)
T ss_dssp ECCSEEECTTSCCCCCC-----------S--SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECS
T ss_pred cccchhhcCCCCcCccC-----------h--hhhccchHhhhccCCCcCcCCCchhCcChhhCcCC
Confidence 99999999999998743 2 235677777765 4456688865578899998874
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.58 E-value=1.5e-14 Score=133.03 Aligned_cols=169 Identities=20% Similarity=0.228 Sum_probs=98.3
Q ss_pred cEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhh-CCCceeEEEecCCC----CCccccCCCCCc
Q 016966 90 TSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFK-SMIEVRVVNLTDMI----LPSSLGLLSNLR 164 (379)
Q Consensus 90 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~----lp~~i~~l~~L~ 164 (379)
+.++.+++.+..+|... .+.++.|++++|.+ ..++...|. .+++|++|++++|. .+..+..+++|+
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l--------~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~ 91 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNL--------SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLR 91 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSCC--------CEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCCC--------CccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCC
Confidence 45666666665565422 23466677776543 334444455 66677777777666 334566667777
Q ss_pred EEEeecCCCCC-c-ccccCcCCCcEEEeeCCcCccc-chhhcCCCCCCEEeccCCCCCcccChhhh---CCCCCCcEEEe
Q 016966 165 TLSLCSCGLPD-I-SFVGYLKKLEILCLRGSDIVKL-PVEVGELTWLKLLDLRDCCFLKVIPPNIL---SKLSHLEELYI 238 (379)
Q Consensus 165 ~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l---~~l~~L~~L~l 238 (379)
+|++++|.++. + ..+..+++|++|++++|.+..+ |..+..+++|++|++++|. +..+|...+ ..+++|+.|++
T Consensus 92 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L 170 (361)
T 2xot_A 92 YLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDL 170 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEEC
T ss_pred EEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEEC
Confidence 77777776666 3 3466667777777777766655 3456666777777776654 334554433 45666777777
Q ss_pred cCCCCcChhhhhhcccccchHhhcCCCC--CcEEEeeccCCC
Q 016966 239 GRESFVDWEEEVEGVKNASLEELKHLPN--LTSLEVHVRDVS 278 (379)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~ 278 (379)
++|.+...+ ...+..++. ++.|++.+|.+.
T Consensus 171 ~~N~l~~l~----------~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 171 SSNKLKKLP----------LTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CSSCCCCCC----------HHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCCCCCccC----------HHHhhhccHhhcceEEecCCCcc
Confidence 766666543 334444444 355666655443
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.57 E-value=1.1e-14 Score=127.93 Aligned_cols=148 Identities=18% Similarity=0.199 Sum_probs=127.6
Q ss_pred CCccCCccEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccC
Q 016966 83 GSTIKHFTSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGL 159 (379)
Q Consensus 83 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~ 159 (379)
...++++++|++++|.+..++.+..+++|+.|++++|.+.+ +++ |..+++|++|++++|. +|. +..
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~--------~~~--l~~l~~L~~L~L~~N~l~~l~~-~~~ 105 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISD--------LSP--LKDLTKLEELSVNRNRLKNLNG-IPS 105 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC--------CGG--GTTCSSCCEEECCSSCCSCCTT-CCC
T ss_pred hhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCC--------Chh--hccCCCCCEEECCCCccCCcCc-ccc
Confidence 45678999999999999889877799999999999977544 444 7899999999999998 553 334
Q ss_pred CCCCcEEEeecCCCCCcccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEec
Q 016966 160 LSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIG 239 (379)
Q Consensus 160 l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 239 (379)
.+|++|++++|.++.++.+..+++|++|++++|.++.++ .+..+++|++|++++|..... + . +..+++|+.|+++
T Consensus 106 -~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~-~-l~~l~~L~~L~l~ 180 (263)
T 1xeu_A 106 -ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-G-G-LTRLKKVNWIDLT 180 (263)
T ss_dssp -SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-T-T-STTCCCCCEEEEE
T ss_pred -CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-H-H-hccCCCCCEEeCC
Confidence 899999999999998767999999999999999999987 789999999999999876554 3 2 7899999999999
Q ss_pred CCCCcCh
Q 016966 240 RESFVDW 246 (379)
Q Consensus 240 ~~~~~~~ 246 (379)
+|.+...
T Consensus 181 ~N~~~~~ 187 (263)
T 1xeu_A 181 GQKCVNE 187 (263)
T ss_dssp EEEEECC
T ss_pred CCcccCC
Confidence 9987653
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.56 E-value=3.9e-14 Score=120.87 Aligned_cols=136 Identities=18% Similarity=0.213 Sum_probs=90.5
Q ss_pred CcccChhhhhCCCceeEEEecCCC----CCccccCCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCcccchh-
Q 016966 129 PVTIPDNFFKSMIEVRVVNLTDMI----LPSSLGLLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIVKLPVE- 201 (379)
Q Consensus 129 ~~~~~~~~~~~l~~L~~L~l~~~~----lp~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~~- 201 (379)
...+|..+. ++|+.|++++|. .+..+..+++|++|++++|.+.. +..+..+++|++|++++|.++.+|..
T Consensus 23 l~~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 99 (220)
T 2v9t_B 23 LTEIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSL 99 (220)
T ss_dssp CSSCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTT
T ss_pred cCcCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhH
Confidence 334554332 567777777776 33456777777777777777766 46677777777777777777777754
Q ss_pred hcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCC
Q 016966 202 VGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVS 278 (379)
Q Consensus 202 ~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 278 (379)
+..+++|++|++++|......+.. +..+++|+.|++++|.+.... +..+..+++|+.|++++|.+.
T Consensus 100 f~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~----------~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 100 FEGLFSLQLLLLNANKINCLRVDA-FQDLHNLNLLSLYDNKLQTIA----------KGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCSCCC----------TTTTTTCTTCCEEECCSSCEE
T ss_pred ccCCCCCCEEECCCCCCCEeCHHH-cCCCCCCCEEECCCCcCCEEC----------HHHHhCCCCCCEEEeCCCCcC
Confidence 466777777777776544433333 677777777777777776543 344666777777777776654
No 112
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.54 E-value=6.8e-14 Score=119.40 Aligned_cols=145 Identities=15% Similarity=0.109 Sum_probs=103.8
Q ss_pred cEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---C-C-ccccCCCCCcEEEeecCCCCC-c-ccccCcCC
Q 016966 112 ELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---L-P-SSLGLLSNLRTLSLCSCGLPD-I-SFVGYLKK 184 (379)
Q Consensus 112 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---l-p-~~i~~l~~L~~L~l~~~~l~~-~-~~~~~l~~ 184 (379)
+++++++|.+ ..+|..+ ...+++|++++|. + + ..+..+++|++|++++|.++. + ..+..+++
T Consensus 14 ~~l~~s~n~l--------~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~ 82 (220)
T 2v70_A 14 TTVDCSNQKL--------NKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG 82 (220)
T ss_dssp TEEECCSSCC--------SSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred CEeEeCCCCc--------ccCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCC
Confidence 4677777543 3455443 2356788888887 3 2 236778888888888888877 3 46788888
Q ss_pred CcEEEeeCCcCcccch-hhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcC
Q 016966 185 LEILCLRGSDIVKLPV-EVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKH 263 (379)
Q Consensus 185 L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~ 263 (379)
|++|++++|.++.++. .+..+++|++|++++|......|.. +..+++|+.|++++|.+.... +..+..
T Consensus 83 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~----------~~~~~~ 151 (220)
T 2v70_A 83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDS-FIGLSSVRLLSLYDNQITTVA----------PGAFDT 151 (220)
T ss_dssp CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTS-STTCTTCSEEECTTSCCCCBC----------TTTTTT
T ss_pred CCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhH-cCCCccCCEEECCCCcCCEEC----------HHHhcC
Confidence 8888888888887765 3777888888888887655544544 678888888888888777642 566777
Q ss_pred CCCCcEEEeeccCCC
Q 016966 264 LPNLTSLEVHVRDVS 278 (379)
Q Consensus 264 l~~L~~L~l~~~~~~ 278 (379)
+++|+.|++++|.+.
T Consensus 152 l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 152 LHSLSTLNLLANPFN 166 (220)
T ss_dssp CTTCCEEECCSCCEE
T ss_pred CCCCCEEEecCcCCc
Confidence 788888888877765
No 113
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.54 E-value=4.3e-14 Score=115.27 Aligned_cols=134 Identities=27% Similarity=0.246 Sum_probs=68.8
Q ss_pred CceeEEEecCCC-----CCccccCCCCCcEEEeecCCCCCcccccCcCCCcEEEeeCCcCcc-cchhhcCCCCCCEEecc
Q 016966 141 IEVRVVNLTDMI-----LPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVK-LPVEVGELTWLKLLDLR 214 (379)
Q Consensus 141 ~~L~~L~l~~~~-----lp~~i~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~L~l~ 214 (379)
++|++|++++|. +|..+..+++|++|++++|.+.....+..+++|++|++++|.+.. +|..+..+++|++|+++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 103 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence 344444444443 333344455555555555555444445555566666666665554 44444455666666666
Q ss_pred CCCCCcccCh-hhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCc
Q 016966 215 DCCFLKVIPP-NILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPR 282 (379)
Q Consensus 215 ~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 282 (379)
+|... .++. ..++.+++|++|++++|.+.... ......+..+++|+.|+++.|....+|.
T Consensus 104 ~N~l~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~-------~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 104 GNKLK-DISTLEPLKKLECLKSLDLFNCEVTNLN-------DYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp SSSCC-SSGGGGGGSSCSCCCEEECCSSGGGTST-------THHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred CCccC-cchhHHHHhcCCCCCEEEeeCCcCcchH-------HHHHHHHHhCccCcEecCCCCChhhccc
Confidence 65432 2221 22556666666666666555432 0001245566666666666666555554
No 114
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.53 E-value=4.1e-15 Score=145.94 Aligned_cols=39 Identities=8% Similarity=0.064 Sum_probs=22.7
Q ss_pred hcccceeeccccccccccccccccccccCCCCcEEEecCCCC
Q 016966 329 LQRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDL 370 (379)
Q Consensus 329 ~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 370 (379)
+++|+.|++++|. +...........+++|++|++++|+.
T Consensus 480 ~~~L~~L~L~~n~---~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 480 CDSLRKLEIRDCP---FGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CTTCCEEEEESCS---CCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred CCCcCEEECcCCC---CcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 4777777777776 33322211123467777777777765
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.53 E-value=8.8e-14 Score=119.46 Aligned_cols=126 Identities=22% Similarity=0.264 Sum_probs=82.3
Q ss_pred CceeEEEecCCC----CCccccCCCCCcEEEeecCCCCC-c-ccccCcCCCcEEEeeCCcCcccchh-hcCCCCCCEEec
Q 016966 141 IEVRVVNLTDMI----LPSSLGLLSNLRTLSLCSCGLPD-I-SFVGYLKKLEILCLRGSDIVKLPVE-VGELTWLKLLDL 213 (379)
Q Consensus 141 ~~L~~L~l~~~~----lp~~i~~l~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l 213 (379)
++|++|++++|. .|..+..+++|++|++++|.+.. + ..+..+++|++|++++|.++.+|.. +..+++|++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 567777777776 35556677777777777777666 3 3456677777777777777766643 456777777777
Q ss_pred cCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCC
Q 016966 214 RDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVS 278 (379)
Q Consensus 214 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 278 (379)
++|.. ..+|.. +..+++|++|++++|.+.... ...+..+++|+.|++.+|.+.
T Consensus 120 s~N~l-~~lp~~-~~~l~~L~~L~L~~N~l~~~~----------~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 120 CCNKL-TELPRG-IERLTHLTHLALDQNQLKSIP----------HGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CSSCC-CSCCTT-GGGCTTCSEEECCSSCCCCCC----------TTTTTTCTTCCEEECTTSCBC
T ss_pred cCCcc-cccCcc-cccCCCCCEEECCCCcCCccC----------HHHHhCCCCCCEEEeeCCCcc
Confidence 77553 355655 466777777777777666532 244566667777777766655
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.51 E-value=7.4e-14 Score=128.42 Aligned_cols=159 Identities=21% Similarity=0.182 Sum_probs=130.2
Q ss_pred CcCCCCCCccCCccEEEEeCCCCCCCCC--CC-CCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC-
Q 016966 77 CREWSDGSTIKHFTSIVLHGIKPNLLPE--VL-ECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI- 152 (379)
Q Consensus 77 ~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~- 152 (379)
+...+. .....++.|++++|.+..++. +. .+++|+.|++++|.+ ..+++..|..+++|++|+|++|.
T Consensus 30 l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i--------~~i~~~~~~~l~~L~~L~Ls~N~l 100 (361)
T 2xot_A 30 LPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL--------NFISSEAFVPVPNLRYLDLSSNHL 100 (361)
T ss_dssp CSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCC--------CEECTTTTTTCTTCCEEECCSSCC
T ss_pred cCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcC--------CccChhhccCCCCCCEEECCCCcC
Confidence 444443 345679999999999976664 33 789999999999764 45666678999999999999998
Q ss_pred ---CCccccCCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCcccchhh----cCCCCCCEEeccCCCCCcccC
Q 016966 153 ---LPSSLGLLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIVKLPVEV----GELTWLKLLDLRDCCFLKVIP 223 (379)
Q Consensus 153 ---lp~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~~~----~~l~~L~~L~l~~~~~~~~~~ 223 (379)
.+..+..+.+|++|++++|.+.. +..+..+++|++|++++|.++.+|..+ ..+++|++|++++|.. ..+|
T Consensus 101 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l-~~l~ 179 (361)
T 2xot_A 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL-KKLP 179 (361)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC-CCCC
T ss_pred CcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC-CccC
Confidence 44568899999999999999988 578999999999999999999999765 5799999999999764 5677
Q ss_pred hhhhCCCCC--CcEEEecCCCCcC
Q 016966 224 PNILSKLSH--LEELYIGRESFVD 245 (379)
Q Consensus 224 ~~~l~~l~~--L~~L~l~~~~~~~ 245 (379)
...+..++. ++.|++.+|.+..
T Consensus 180 ~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 180 LTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp HHHHHHSCHHHHTTEECCSSCEEC
T ss_pred HHHhhhccHhhcceEEecCCCccC
Confidence 655788887 4889999998864
No 117
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.48 E-value=1.4e-14 Score=144.86 Aligned_cols=159 Identities=16% Similarity=0.159 Sum_probs=100.9
Q ss_pred ccCCccEEEEeCCCCCCCCCCC-CCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCC
Q 016966 85 TIKHFTSIVLHGIKPNLLPEVL-ECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLL 160 (379)
Q Consensus 85 ~~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l 160 (379)
..+++++|.+..+.+...+... ...+|+.+.+........ ...+++..|..++.|++|+|++|. +|..+..+
T Consensus 171 s~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n----~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l 246 (727)
T 4b8c_D 171 STPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIEN----RMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKY 246 (727)
T ss_dssp -------------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGC
T ss_pred cCCccceEEeeCCCCCcchhhHhhcCccCcccccCcccccc----ceecChhhhccCCCCcEEECCCCCCCCCChhhcCC
Confidence 3467889999888875554322 444444444433111100 123556678899999999999998 88888899
Q ss_pred CCCcEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEec
Q 016966 161 SNLRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIG 239 (379)
Q Consensus 161 ~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 239 (379)
.+|++|+|++|.++. |..++.+++|++|+|++|.++.+|..++.+++|++|++++|.. ..+|.. ++.+++|+.|+++
T Consensus 247 ~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l-~~lp~~-~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 247 DFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMV-TTLPWE-FGNLCNLQFLGVE 324 (727)
T ss_dssp CSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCC-CCCCSS-TTSCTTCCCEECT
T ss_pred CCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCC-CccChh-hhcCCCccEEeCC
Confidence 999999999999998 8889999999999999999999999999999999999999764 588887 8999999999999
Q ss_pred CCCCcChhhh
Q 016966 240 RESFVDWEEE 249 (379)
Q Consensus 240 ~~~~~~~~~~ 249 (379)
+|.+.+..+.
T Consensus 325 ~N~l~~~~p~ 334 (727)
T 4b8c_D 325 GNPLEKQFLK 334 (727)
T ss_dssp TSCCCSHHHH
T ss_pred CCccCCCChH
Confidence 9999876543
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.45 E-value=2.2e-13 Score=111.06 Aligned_cols=131 Identities=25% Similarity=0.307 Sum_probs=111.8
Q ss_pred cCCCCCcEEEeecCCCC--C-cccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCc
Q 016966 158 GLLSNLRTLSLCSCGLP--D-ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLE 234 (379)
Q Consensus 158 ~~l~~L~~L~l~~~~l~--~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 234 (379)
...++|++|++++|.+. . |..+..+++|++|++++|.++.+ ..+..+++|++|++++|.....+|.. ++.+++|+
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~ 98 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDML-AEKLPNLT 98 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHH-HHHCTTCC
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHH-HhhCCCCC
Confidence 34578999999999998 4 66779999999999999999988 68899999999999998876666665 67799999
Q ss_pred EEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCc----cc-cccCCcEEEEEeecc
Q 016966 235 ELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPR----GL-LLEKLERYSIYIRRY 299 (379)
Q Consensus 235 ~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~----~~-~~~~L~~L~l~~~~~ 299 (379)
.|++++|.+.+.+ .+..+..+++|+.|++++|.++.++. .+ .+++|+.|++..+..
T Consensus 99 ~L~Ls~N~l~~~~---------~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 99 HLNLSGNKLKDIS---------TLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp EEECBSSSCCSSG---------GGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred EEeccCCccCcch---------hHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 9999999998753 34788999999999999999998886 33 689999998865543
No 119
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.43 E-value=3.5e-14 Score=139.29 Aligned_cols=105 Identities=12% Similarity=0.090 Sum_probs=50.7
Q ss_pred hcCCCCCcEEEeeccCCCC-CCccc--cccCCcEEEEEeecccccCc----ccccceEEEEe-CCcccchHHH---HHHh
Q 016966 261 LKHLPNLTSLEVHVRDVSS-LPRGL--LLEKLERYSIYIRRYFSRKT----GIWCRQFRVEL-NNKICLKDSL---IVQL 329 (379)
Q Consensus 261 l~~l~~L~~L~l~~~~~~~-~~~~~--~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~l-~~~~~~~~~~---~~~~ 329 (379)
+..+++|+.|++++ .++. ....+ .+++|+.|+++.+....... ..+++...|.+ ++... ...+ ...+
T Consensus 428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~-~~~~~~~~~~l 505 (594)
T 2p1m_B 428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG-DKALLANASKL 505 (594)
T ss_dssp HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCC-HHHHHHTGGGG
T ss_pred HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCc-HHHHHHHHHhC
Confidence 44455566666643 2221 11111 25667777775544321111 22455557777 33332 1111 1224
Q ss_pred cccceeeccccccccccccccccccccCCCCcEEEecCCCC
Q 016966 330 QRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLEGSDL 370 (379)
Q Consensus 330 ~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 370 (379)
++|+.|++++|+ . ...........+|.|+...+..+..
T Consensus 506 ~~L~~L~l~~~~--~-~~~~~~~l~~~lp~l~i~~~~~~~~ 543 (594)
T 2p1m_B 506 ETMRSLWMSSCS--V-SFGACKLLGQKMPKLNVEVIDERGA 543 (594)
T ss_dssp GGSSEEEEESSC--C-BHHHHHHHHHHCTTEEEEEECSSSC
T ss_pred CCCCEEeeeCCC--C-CHHHHHHHHHhCCCCEEEEecCCCc
Confidence 788888888887 3 2221111123477777666665543
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.43 E-value=2.3e-13 Score=108.61 Aligned_cols=58 Identities=28% Similarity=0.278 Sum_probs=22.9
Q ss_pred cCCCCCcEEEeecCCCCCcccccCcCCCcEEEeeCCcCcc-cchhhcCCCCCCEEeccC
Q 016966 158 GLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVK-LPVEVGELTWLKLLDLRD 215 (379)
Q Consensus 158 ~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~L~l~~ 215 (379)
..+++|++|++++|.++....++.+++|++|++++|.++. +|..+..+++|++|++++
T Consensus 39 ~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~ 97 (149)
T 2je0_A 39 DEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSG 97 (149)
T ss_dssp TTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTT
T ss_pred hhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCC
Confidence 3333444444444433333333334444444444444433 333333344444444444
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.42 E-value=1.5e-13 Score=109.66 Aligned_cols=125 Identities=23% Similarity=0.265 Sum_probs=106.2
Q ss_pred CCCCCcEEEeecCCCC--C-cccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcE
Q 016966 159 LLSNLRTLSLCSCGLP--D-ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEE 235 (379)
Q Consensus 159 ~l~~L~~L~l~~~~l~--~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 235 (379)
..++|++|++++|.+. . |..+..+++|++|++++|.++.+ ..+..+++|++|++++|.....+|.. ++.+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVL-AEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHH-HHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHH-hhhCCCCCE
Confidence 3467899999999988 3 67778999999999999999988 68899999999999998876666664 678999999
Q ss_pred EEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCc----cc-cccCCcEEEE
Q 016966 236 LYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPR----GL-LLEKLERYSI 294 (379)
Q Consensus 236 L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~----~~-~~~~L~~L~l 294 (379)
|++++|.+.+.+ .+..++.+++|+.|++++|.++.++. .+ .+++|+.|++
T Consensus 93 L~ls~N~i~~~~---------~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 93 LNLSGNKIKDLS---------TIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp EECTTSCCCSHH---------HHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred EECCCCcCCChH---------HHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 999999998753 34778999999999999999998776 23 6889998865
No 122
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.38 E-value=8.8e-13 Score=108.32 Aligned_cols=82 Identities=17% Similarity=0.220 Sum_probs=34.8
Q ss_pred CCcEEEeecCCCCCcccccCcCCCcEEEeeCCcCcccchhh-cCCCCCCEEeccCCCCCcccCh-hhhCCCCCCcEEEec
Q 016966 162 NLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEV-GELTWLKLLDLRDCCFLKVIPP-NILSKLSHLEELYIG 239 (379)
Q Consensus 162 ~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~-~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~ 239 (379)
+|++|++++|.++..+.+..+++|++|++++|.++.+|..+ ..+++|++|++++|.. ..+|. ..++.+++|+.|+++
T Consensus 43 ~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~ 121 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL-VELGDLDPLASLKSLTYLCIL 121 (176)
T ss_dssp CCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCC-CCGGGGGGGGGCTTCCEEECC
T ss_pred CCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcC-CcchhhHhhhcCCCCCEEEec
Confidence 44444444444443333444444444444444444444322 4444444444444332 22332 113444444444444
Q ss_pred CCCCc
Q 016966 240 RESFV 244 (379)
Q Consensus 240 ~~~~~ 244 (379)
+|.+.
T Consensus 122 ~N~i~ 126 (176)
T 1a9n_A 122 RNPVT 126 (176)
T ss_dssp SSGGG
T ss_pred CCCCC
Confidence 44443
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.38 E-value=2.5e-12 Score=107.21 Aligned_cols=102 Identities=24% Similarity=0.226 Sum_probs=54.5
Q ss_pred ceeEEEecCCC---CCc--cccCCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCcccch-hhcCCCCCCEEec
Q 016966 142 EVRVVNLTDMI---LPS--SLGLLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIVKLPV-EVGELTWLKLLDL 213 (379)
Q Consensus 142 ~L~~L~l~~~~---lp~--~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l 213 (379)
+|++|++++|. ++. .++.+++|++|++++|.++. |..+..+++|++|++++|.++.++. .+..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 55556665555 222 25555556666665555555 3455555556666665555554443 2455555555555
Q ss_pred cCCCCCcccChhhhCCCCCCcEEEecCCCCc
Q 016966 214 RDCCFLKVIPPNILSKLSHLEELYIGRESFV 244 (379)
Q Consensus 214 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 244 (379)
++|......|.. ++.+++|++|++++|.+.
T Consensus 110 ~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 110 YDNQISCVMPGS-FEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CSSCCCEECTTS-STTCTTCCEEECTTCCBC
T ss_pred CCCcCCeeCHHH-hhcCCCCCEEEeCCCCcc
Confidence 555444433333 455555555555555554
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.38 E-value=3.1e-12 Score=106.63 Aligned_cols=125 Identities=18% Similarity=0.166 Sum_probs=105.2
Q ss_pred cEEEEeCCCCCCCCCCCCCCCccEEEeecCCCCCCCCCCCcccCh-hhhhCCCceeEEEecCCC----CCccccCCCCCc
Q 016966 90 TSIVLHGIKPNLLPEVLECPQLELLFIRGGGRDDPWETSPVTIPD-NFFKSMIEVRVVNLTDMI----LPSSLGLLSNLR 164 (379)
Q Consensus 90 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~----lp~~i~~l~~L~ 164 (379)
+.++++++.+..+|... .++++.|++++|.+. .+++ .+|..+++|++|++++|. .|..+..+++|+
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~--------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 81 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELG--------RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ 81 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCC--------SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred CEEEcCCCCcCcCccCC-CCCCCEEECCCCcCC--------ccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCC
Confidence 68899999988888643 348999999997653 3443 457899999999999998 577899999999
Q ss_pred EEEeecCCCCC--cccccCcCCCcEEEeeCCcCccc-chhhcCCCCCCEEeccCCCCCcccC
Q 016966 165 TLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIVKL-PVEVGELTWLKLLDLRDCCFLKVIP 223 (379)
Q Consensus 165 ~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~ 223 (379)
+|++++|.++. +..+..+++|++|++++|.++.+ |..+..+++|++|++++|......+
T Consensus 82 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 82 ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp EEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 99999999998 45688999999999999999966 6678899999999999987765544
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.37 E-value=1.3e-12 Score=107.27 Aligned_cols=132 Identities=20% Similarity=0.195 Sum_probs=108.8
Q ss_pred cccCCCCCcEEEeecCCCCCcccccCcC-CCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCc
Q 016966 156 SLGLLSNLRTLSLCSCGLPDISFVGYLK-KLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLE 234 (379)
Q Consensus 156 ~i~~l~~L~~L~l~~~~l~~~~~~~~l~-~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 234 (379)
.+..+.+|++|++++|.++..+.+..+. +|++|++++|.++.+ ..+..+++|++|++++|.. ..+|...++.+++|+
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRI-CRIGEGLDQALPDLT 91 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCC-CEECSCHHHHCTTCC
T ss_pred hcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcc-cccCcchhhcCCCCC
Confidence 3566788899999999888854566665 999999999999988 5889999999999999775 456665468999999
Q ss_pred EEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCcc----c-cccCCcEEEEEeec
Q 016966 235 ELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRG----L-LLEKLERYSIYIRR 298 (379)
Q Consensus 235 ~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~----~-~~~~L~~L~l~~~~ 298 (379)
.|++++|.+...+ ....++.+++|+.|++++|.+..+|.. + .+++|+.|+++.+.
T Consensus 92 ~L~L~~N~i~~~~---------~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 92 ELILTNNSLVELG---------DLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EEECCSCCCCCGG---------GGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EEECCCCcCCcch---------hhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 9999999997754 234788999999999999999988875 3 68999999885444
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.34 E-value=8.5e-12 Score=103.98 Aligned_cols=103 Identities=22% Similarity=0.296 Sum_probs=61.5
Q ss_pred CceeEEEecCCC---CCccccCCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCcccch-hhcCCCCCCEEecc
Q 016966 141 IEVRVVNLTDMI---LPSSLGLLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIVKLPV-EVGELTWLKLLDLR 214 (379)
Q Consensus 141 ~~L~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~ 214 (379)
++|++|++++|. +|..+..+.+|++|++++|.++. +..+..+++|++|++++|.++.++. .+..+++|++|+++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 356666666665 55566666666666666666665 3446666666666666666665553 45566666666666
Q ss_pred CCCCCcccChhhhCCCCCCcEEEecCCCCc
Q 016966 215 DCCFLKVIPPNILSKLSHLEELYIGRESFV 244 (379)
Q Consensus 215 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 244 (379)
+|.. ..++...+..+++|+.|++.+|.+.
T Consensus 111 ~N~l-~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 111 GNDI-SVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SSCC-CBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCC-CeeChhhhhcCccccEEEeCCCCee
Confidence 6443 3444433556666666666666554
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.32 E-value=1.8e-11 Score=100.43 Aligned_cols=88 Identities=27% Similarity=0.405 Sum_probs=49.6
Q ss_pred ccCCCCCcEEEeecCCCCC-c-ccccCcCCCcEEEeeCCcCcccchh-hcCCCCCCEEeccCCCCCcccChhhhCCCCCC
Q 016966 157 LGLLSNLRTLSLCSCGLPD-I-SFVGYLKKLEILCLRGSDIVKLPVE-VGELTWLKLLDLRDCCFLKVIPPNILSKLSHL 233 (379)
Q Consensus 157 i~~l~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L 233 (379)
+..+++|++|++++|.++. + ..+..+++|++|++++|.++.+|.. +..+++|++|++++|.. ..+|...+..+++|
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L 126 (177)
T 2o6r_A 48 FDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQL-KSVPDGIFDRLTSL 126 (177)
T ss_dssp TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTC
T ss_pred hcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcc-eEeCHHHhcCCccc
Confidence 3455555555555555555 2 2345566666666666666655543 45566666666666543 34444434556666
Q ss_pred cEEEecCCCCcC
Q 016966 234 EELYIGRESFVD 245 (379)
Q Consensus 234 ~~L~l~~~~~~~ 245 (379)
++|++++|.+..
T Consensus 127 ~~L~l~~N~~~~ 138 (177)
T 2o6r_A 127 QKIWLHTNPWDC 138 (177)
T ss_dssp CEEECCSSCBCC
T ss_pred CEEEecCCCeec
Confidence 666666666554
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.30 E-value=2.6e-12 Score=128.47 Aligned_cols=150 Identities=19% Similarity=0.173 Sum_probs=99.6
Q ss_pred CCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEE-----ecCCC---CCccccCCCCCcEEEeecCCCCC-ccc
Q 016966 108 CPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVN-----LTDMI---LPSSLGLLSNLRTLSLCSCGLPD-ISF 178 (379)
Q Consensus 108 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~-----l~~~~---lp~~i~~l~~L~~L~l~~~~l~~-~~~ 178 (379)
.+.++.|.+.+|.+. ..+...+ ....|+.+. +..+. .+..+..+.+|+.|++++|.+.. +..
T Consensus 172 ~~~~~~l~L~~n~~~--------~~~~~~l-~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~ 242 (727)
T 4b8c_D 172 TPLTPKIELFANGKD--------EANQALL-QHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISAN 242 (727)
T ss_dssp -----------------------------------------------------------CCCCCCEEECTTSCCSCCCGG
T ss_pred CCccceEEeeCCCCC--------cchhhHh-hcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChh
Confidence 355777888775432 2333222 223333333 33333 56778999999999999999988 788
Q ss_pred ccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccch
Q 016966 179 VGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASL 258 (379)
Q Consensus 179 ~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 258 (379)
+..+++|++|+|++|.++.+|..++.+++|++|++++|... .+|.. ++.+++|+.|++++|.+.. ++
T Consensus 243 ~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~-~~~l~~L~~L~L~~N~l~~-----------lp 309 (727)
T 4b8c_D 243 IFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAE-LGSCFQLKYFYFFDNMVTT-----------LP 309 (727)
T ss_dssp GGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSS-GGGGTTCSEEECCSSCCCC-----------CC
T ss_pred hcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChh-hcCCCCCCEEECCCCCCCc-----------cC
Confidence 88999999999999999999999999999999999998865 78877 7999999999999999875 56
Q ss_pred HhhcCCCCCcEEEeeccCCCC
Q 016966 259 EELKHLPNLTSLEVHVRDVSS 279 (379)
Q Consensus 259 ~~l~~l~~L~~L~l~~~~~~~ 279 (379)
..++.+++|+.|++++|.++.
T Consensus 310 ~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 310 WEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp SSTTSCTTCCCEECTTSCCCS
T ss_pred hhhhcCCCccEEeCCCCccCC
Confidence 679999999999999999884
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.30 E-value=9.1e-12 Score=120.92 Aligned_cols=120 Identities=18% Similarity=0.258 Sum_probs=101.5
Q ss_pred CCcEEEeecCCCCCcccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCC
Q 016966 162 NLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRE 241 (379)
Q Consensus 162 ~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 241 (379)
.|++|++++|.++.++.++.+++|++|++++|.++.+|..++.+++|++|++++|.... +| . ++.+++|+.|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~-l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VD-G-VANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CG-G-GTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC-Cc-c-cCCCCCCcEEECCCC
Confidence 58899999999988334999999999999999999999999999999999999977554 67 4 799999999999999
Q ss_pred CCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccc-----cccCCcEEE
Q 016966 242 SFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGL-----LLEKLERYS 293 (379)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-----~~~~L~~L~ 293 (379)
.+.+.. .+..++.+++|+.|++++|.++.+|... .+++|+.|+
T Consensus 519 ~l~~~~---------~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 519 RLQQSA---------AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CCCSSS---------TTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCC---------CcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 988741 1678889999999999999998776544 378888875
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.30 E-value=1.5e-11 Score=102.47 Aligned_cols=122 Identities=20% Similarity=0.201 Sum_probs=71.8
Q ss_pred eEEEecCCC---CCccccCCCCCcEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccch-hhcCCCCCCEEeccCCCC
Q 016966 144 RVVNLTDMI---LPSSLGLLSNLRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPV-EVGELTWLKLLDLRDCCF 218 (379)
Q Consensus 144 ~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~ 218 (379)
++++++++. +|..+. .+|++|++++|.++. |..+..+++|++|++++|.++.++. .+..+++|++|++++|..
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 456666655 554332 466666666666666 5666666666666666666665553 456666666666666553
Q ss_pred CcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCC
Q 016966 219 LKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVS 278 (379)
Q Consensus 219 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 278 (379)
. .++...++.+++|+.|++++|.+.... ...+..+++|+.|++++|.+.
T Consensus 91 ~-~i~~~~f~~l~~L~~L~L~~N~l~~~~----------~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 91 R-CIPPRTFDGLKSLRLLSLHGNDISVVP----------EGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp C-BCCTTTTTTCTTCCEEECCSSCCCBCC----------TTTTTTCTTCCEEECCSSCEE
T ss_pred C-EeCHHHhCCCCCCCEEECCCCCCCeeC----------hhhhhcCccccEEEeCCCCee
Confidence 3 333333566666666666666665432 234555666666666665543
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.29 E-value=9.2e-12 Score=120.88 Aligned_cols=121 Identities=22% Similarity=0.190 Sum_probs=103.1
Q ss_pred ceeEEEecCCC---CCccccCCCCCcEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCC
Q 016966 142 EVRVVNLTDMI---LPSSLGLLSNLRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCC 217 (379)
Q Consensus 142 ~L~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~ 217 (379)
.|++|++++|. +|. ++.+++|++|++++|.++. |..++.+++|++|++++|.++.+| .++.+++|++|++++|.
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence 57899999998 776 9999999999999999999 899999999999999999999999 89999999999999987
Q ss_pred CCccc-ChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEe
Q 016966 218 FLKVI-PPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEV 272 (379)
Q Consensus 218 ~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 272 (379)
..... |.. ++.+++|+.|++++|.+.+.++ .....+..+++|+.|++
T Consensus 520 l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~~~-------~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 520 LQQSAAIQP-LVSCPRLVLLNLQGNSLCQEEG-------IQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCSSSTTGG-GGGCTTCCEEECTTSGGGGSSS-------CTTHHHHHCTTCSEEEC
T ss_pred CCCCCCcHH-HhcCCCCCEEEecCCcCCCCcc-------HHHHHHHHCcccCccCC
Confidence 66554 666 7999999999999999876431 12233445788888853
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.26 E-value=5.6e-11 Score=97.50 Aligned_cols=123 Identities=22% Similarity=0.264 Sum_probs=81.2
Q ss_pred eeEEEecCCC---CCccccCCCCCcEEEeecCCCCC-c-ccccCcCCCcEEEeeCCcCcccchh-hcCCCCCCEEeccCC
Q 016966 143 VRVVNLTDMI---LPSSLGLLSNLRTLSLCSCGLPD-I-SFVGYLKKLEILCLRGSDIVKLPVE-VGELTWLKLLDLRDC 216 (379)
Q Consensus 143 L~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~ 216 (379)
.+.++++++. +|..+ ..+|++|++++|.+.. + ..+..+++|++|++++|.++.+|.. +..+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 3455665555 44332 3577777777777776 3 4457777888888888877777654 567777888888776
Q ss_pred CCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCC
Q 016966 217 CFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVS 278 (379)
Q Consensus 217 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 278 (379)
... .++...++.+++|+.|++++|.+.... ...+..+++|+.|++++|.+.
T Consensus 87 ~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~----------~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 87 KLQ-SLPNGVFDKLTQLKELALDTNQLKSVP----------DGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCSCCC----------TTTTTTCTTCCEEECCSSCBC
T ss_pred Ccc-ccCHHHhhCCcccCEEECcCCcceEeC----------HHHhcCCcccCEEEecCCCee
Confidence 543 444444577777777777777776532 233566777777777777665
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.24 E-value=3.9e-14 Score=118.83 Aligned_cols=107 Identities=21% Similarity=0.261 Sum_probs=65.5
Q ss_pred hhhCCCceeEEEecCCC---CCccccCCCCCcEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEE
Q 016966 136 FFKSMIEVRVVNLTDMI---LPSSLGLLSNLRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLL 211 (379)
Q Consensus 136 ~~~~l~~L~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L 211 (379)
.|..+++|++|++++|. +| .+..+++|++|++++|.+.. |..+..+++|++|++++|.++.+| .+..+++|++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVL 120 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEE
Confidence 34566677777776666 55 56666666777776666666 555555566667777666666665 46666666666
Q ss_pred eccCCCCCcccCh-hhhCCCCCCcEEEecCCCCcC
Q 016966 212 DLRDCCFLKVIPP-NILSKLSHLEELYIGRESFVD 245 (379)
Q Consensus 212 ~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~ 245 (379)
++++|.... ++. ..+..+++|+.|++++|.+.+
T Consensus 121 ~l~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 121 YMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp EESEEECCC-HHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred ECCCCcCCc-hhHHHHHhcCCCCCEEEecCCcccc
Confidence 666654332 221 225666666666666665543
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.23 E-value=5.6e-13 Score=111.73 Aligned_cols=81 Identities=17% Similarity=0.205 Sum_probs=40.0
Q ss_pred hhCCCceeEEEecCCC---CCccccCCCCCcEEEeecCCCCCcccccCcCCCcEEEeeCCcCcccch--hhcCCCCCCEE
Q 016966 137 FKSMIEVRVVNLTDMI---LPSSLGLLSNLRTLSLCSCGLPDISFVGYLKKLEILCLRGSDIVKLPV--EVGELTWLKLL 211 (379)
Q Consensus 137 ~~~l~~L~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L 211 (379)
+..+++|++|++++|. +|..+..+++|++|++++|.+..++.+..+++|++|++++|.++.++. .+..+++|++|
T Consensus 66 ~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L 145 (198)
T 1ds9_A 66 LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDL 145 (198)
T ss_dssp HHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEE
T ss_pred cccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEE
Confidence 3444555555555554 444444444555555555555442244455555555555555554432 34455555555
Q ss_pred eccCCC
Q 016966 212 DLRDCC 217 (379)
Q Consensus 212 ~l~~~~ 217 (379)
++++|.
T Consensus 146 ~l~~N~ 151 (198)
T 1ds9_A 146 LLAGNP 151 (198)
T ss_dssp EECSCH
T ss_pred EecCCc
Confidence 555543
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.19 E-value=3.4e-11 Score=109.13 Aligned_cols=99 Identities=17% Similarity=0.162 Sum_probs=78.4
Q ss_pred cCCCcEEEeeCCcCcccch-hhcCCCCCCEEeccCCCCCcccChhhhCCCCCCc-EEEecCCCCcChhhhhhcccccchH
Q 016966 182 LKKLEILCLRGSDIVKLPV-EVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLE-ELYIGRESFVDWEEEVEGVKNASLE 259 (379)
Q Consensus 182 l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~ 259 (379)
+++|+.+++.+|+++.+|. .+..+++|+.+++.++ +..++...+..+++|+ .+.+.. .+...+ ..
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~----------~~ 291 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA-SVTAIE----------FG 291 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT-TCCEEC----------TT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc-cceEEc----------hh
Confidence 6789999999888888886 4778889999998885 6677777788888998 888885 555443 56
Q ss_pred hhcCCCCCcEEEeeccCCCCCCccc--cccCCcEEE
Q 016966 260 ELKHLPNLTSLEVHVRDVSSLPRGL--LLEKLERYS 293 (379)
Q Consensus 260 ~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~ 293 (379)
.+..|++|+.+++..+.+..++... .+++|+.+.
T Consensus 292 aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 292 AFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred hhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 7888889999998888888777754 578888764
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.09 E-value=5.8e-10 Score=91.12 Aligned_cols=98 Identities=22% Similarity=0.380 Sum_probs=54.3
Q ss_pred eEEEecCCC---CCccccCCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCcccchh-hcCCCCCCEEeccCCC
Q 016966 144 RVVNLTDMI---LPSSLGLLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIVKLPVE-VGELTWLKLLDLRDCC 217 (379)
Q Consensus 144 ~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~ 217 (379)
+.++++++. +|..+. .+|++|++++|.+.. +..+..+++|++|++++|+++.+|.. +..+++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 445555554 444332 556666666666555 34455666666666666666666543 3556666666666644
Q ss_pred CCcccChhhhCCCCCCcEEEecCCCCc
Q 016966 218 FLKVIPPNILSKLSHLEELYIGRESFV 244 (379)
Q Consensus 218 ~~~~~~~~~l~~l~~L~~L~l~~~~~~ 244 (379)
. ..+|...++.+++|+.|++++|.+.
T Consensus 93 l-~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 L-KSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp C-CCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred c-ceeCHHHhccccCCCEEEeCCCCcc
Confidence 3 3344433555666666666666554
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.09 E-value=6e-10 Score=90.71 Aligned_cols=100 Identities=21% Similarity=0.299 Sum_probs=57.9
Q ss_pred eeEEEecCCC---CCccccCCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCcccchh-hcCCCCCCEEeccCC
Q 016966 143 VRVVNLTDMI---LPSSLGLLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIVKLPVE-VGELTWLKLLDLRDC 216 (379)
Q Consensus 143 L~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~ 216 (379)
.++++++++. +|..+ ..+|++|++++|.++. +..+..+++|++|++++|.++.+|.. +..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 3455555554 44433 2556666666666665 34466666666666666666666653 356666666666665
Q ss_pred CCCcccChhhhCCCCCCcEEEecCCCCcC
Q 016966 217 CFLKVIPPNILSKLSHLEELYIGRESFVD 245 (379)
Q Consensus 217 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 245 (379)
.. ..++...+..+++|+.|++++|.+..
T Consensus 89 ~l-~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 89 QL-KSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CC-CCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred cc-CEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 43 33444335666666666666665543
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.08 E-value=8.3e-10 Score=90.21 Aligned_cols=107 Identities=19% Similarity=0.180 Sum_probs=83.2
Q ss_pred CcEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccc-hhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecC
Q 016966 163 LRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLP-VEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGR 240 (379)
Q Consensus 163 L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 240 (379)
-+.++++++.+.. |..+. ++|++|++++|.++.++ ..+..+++|++|++++|. +..+|...++.+++|+.|++++
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCC
Confidence 3678888888877 66554 78899999999888774 467888999999998865 4556666568889999999998
Q ss_pred CCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCc
Q 016966 241 ESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPR 282 (379)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 282 (379)
|.+.... ...+..+++|+.|++++|.+...+.
T Consensus 91 N~l~~l~----------~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIP----------RGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCCCC----------TTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CccceeC----------HHHhccccCCCEEEeCCCCcccccc
Confidence 8887643 3347788889999998888775554
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.06 E-value=1e-09 Score=89.35 Aligned_cols=106 Identities=21% Similarity=0.233 Sum_probs=77.9
Q ss_pred CcEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccc-hhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecC
Q 016966 163 LRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLP-VEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGR 240 (379)
Q Consensus 163 L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 240 (379)
.+.++++++.++. |..+. ++|++|++++|.++.++ ..+..+++|++|++++|.. ..++...+..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL-TVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCc-CccChhhccCCCCCCEEECCC
Confidence 5678888888877 65553 67888888888888774 4577888888888888654 455655567888888888888
Q ss_pred CCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCC
Q 016966 241 ESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLP 281 (379)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 281 (379)
|.+.... +..+..+++|+.|++++|.+...+
T Consensus 88 N~l~~~~----------~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 88 NQLKSIP----------RGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SCCCCCC----------TTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CccCEeC----------HHHhcCCCCCCEEEeCCCCCCCCc
Confidence 8877643 345777888888888888766433
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.01 E-value=6.7e-11 Score=108.79 Aligned_cols=111 Identities=18% Similarity=0.097 Sum_probs=56.5
Q ss_pred CCCcEEEeecCCCCC--cccc-----cCcCCCcEEEeeCCcCc-----ccchhhcCCCCCCEEeccCCCCCccc----Ch
Q 016966 161 SNLRTLSLCSCGLPD--ISFV-----GYLKKLEILCLRGSDIV-----KLPVEVGELTWLKLLDLRDCCFLKVI----PP 224 (379)
Q Consensus 161 ~~L~~L~l~~~~l~~--~~~~-----~~l~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~~~~~----~~ 224 (379)
.+|++|++++|.+.. ...+ ...++|++|++++|.++ .++..+...++|++|++++|.....- +.
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~ 205 (372)
T 3un9_A 126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA 205 (372)
T ss_dssp HTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH
T ss_pred HhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH
Confidence 355566666665544 2222 12355666666666554 23334455566666666665532211 11
Q ss_pred hhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCC
Q 016966 225 NILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVS 278 (379)
Q Consensus 225 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 278 (379)
. +...++|++|++++|.+.+.. ...+...+...++|++|++++|.++
T Consensus 206 ~-L~~~~~L~~L~Ls~N~i~~~g------~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 206 Q-LDRNRQLQELNVAYNGAGDTA------ALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp H-GGGCSCCCEEECCSSCCCHHH------HHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred H-HhcCCCcCeEECCCCCCCHHH------HHHHHHHHHhCCCCCEEeccCCCCC
Confidence 1 344556666666666655422 1123344445566666666666554
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.98 E-value=2e-08 Score=93.25 Aligned_cols=203 Identities=13% Similarity=0.127 Sum_probs=88.3
Q ss_pred ccChhhhhCCCceeEEEecCCC---CCccccCCCCCcEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccch-hhcCC
Q 016966 131 TIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLSNLRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPV-EVGEL 205 (379)
Q Consensus 131 ~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l 205 (379)
.+....|.++ +|+.+.+...- -+..+..+.+|+.+++..+.++. +...-...+|+.+.+.. .+..++. .+..+
T Consensus 148 ~I~~~aF~~~-~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~ 225 (401)
T 4fdw_A 148 SIGDMAFFNS-TVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKT 225 (401)
T ss_dssp EECTTTTTTC-CCCEEECCTTCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTC
T ss_pred EECHHhcCCC-CceEEEeCCCccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC-chheehhhHhhCC
Confidence 3444444442 34555544322 22334444555555555444444 22111234455555442 2333332 23344
Q ss_pred CCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCC-----CC
Q 016966 206 TWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVS-----SL 280 (379)
Q Consensus 206 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-----~~ 280 (379)
++|+.+.+..+ +..++...+.+ ++|+.+.+. +.+...+ ...+..|++|+.+.+..+... .+
T Consensus 226 ~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp-~~i~~I~----------~~aF~~c~~L~~l~l~~~~~~~~~~~~I 291 (401)
T 4fdw_A 226 SQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLP-NGVTNIA----------SRAFYYCPELAEVTTYGSTFNDDPEAMI 291 (401)
T ss_dssp TTCCCEECCTT--CCEECTTTTTT-CCCSEEEEE-TTCCEEC----------TTTTTTCTTCCEEEEESSCCCCCTTCEE
T ss_pred CCCCEEecCCC--ccCcccccccc-CCccEEEeC-CCccEEC----------hhHhhCCCCCCEEEeCCccccCCcccEE
Confidence 45555554431 23333333333 445555543 3333221 334455555555555544332 23
Q ss_pred Cccc--cccCCcEEEEEeecccccCcccccceEEEEeCCcccchHHHHHHhcccceeeccccccccccccccccccccCC
Q 016966 281 PRGL--LLEKLERYSIYIRRYFSRKTGIWCRQFRVELNNKICLKDSLIVQLQRIEDLELSELQEQDVDYFRNELVKVGSS 358 (379)
Q Consensus 281 ~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~ 358 (379)
+... .|++|+.+.+. ++...++......+++|+.+.|.++ ++.++...+. ++
T Consensus 292 ~~~aF~~c~~L~~l~l~--------------------~~i~~I~~~aF~~c~~L~~l~lp~~----l~~I~~~aF~-~~- 345 (401)
T 4fdw_A 292 HPYCLEGCPKLARFEIP--------------------ESIRILGQGLLGGNRKVTQLTIPAN----VTQINFSAFN-NT- 345 (401)
T ss_dssp CTTTTTTCTTCCEECCC--------------------TTCCEECTTTTTTCCSCCEEEECTT----CCEECTTSSS-SS-
T ss_pred CHHHhhCCccCCeEEeC--------------------CceEEEhhhhhcCCCCccEEEECcc----ccEEcHHhCC-CC-
Confidence 3222 34555555442 2222232222111366777766433 4555554443 34
Q ss_pred CCcEEEecCCCCccCCC
Q 016966 359 HLKRLRLEGSDLALNPA 375 (379)
Q Consensus 359 ~L~~L~l~~c~~l~~~~ 375 (379)
+|+.+.+.++...+.++
T Consensus 346 ~L~~l~l~~n~~~~l~~ 362 (401)
T 4fdw_A 346 GIKEVKVEGTTPPQVFE 362 (401)
T ss_dssp CCCEEEECCSSCCBCCC
T ss_pred CCCEEEEcCCCCccccc
Confidence 67777776665544443
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.87 E-value=1.7e-10 Score=106.04 Aligned_cols=156 Identities=13% Similarity=0.052 Sum_probs=113.4
Q ss_pred ccCCccEEEEeCCCCCCCC-----CC-C-CCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCCC----
Q 016966 85 TIKHFTSIVLHGIKPNLLP-----EV-L-ECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMIL---- 153 (379)
Q Consensus 85 ~~~~l~~L~l~~~~~~~~~-----~~-~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l---- 153 (379)
..+.++.|++++|.+.... .. . ..++|+.|++++|.+.+ .....++..+++|+.|++++|.+
T Consensus 70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~-------~~~~~l~~~L~~L~~L~Ls~n~l~~~~ 142 (372)
T 3un9_A 70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDP-------AGLRTLLPVFLRARKLGLQLNSLGPEA 142 (372)
T ss_dssp HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCH-------HHHHHTHHHHHTEEEEECCSSCCCHHH
T ss_pred HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCH-------HHHHHHHHHHHhccHhhcCCCCCCHHH
Confidence 3467899999999874321 11 1 34799999999977633 22223344567899999999981
Q ss_pred ----Cccc-cCCCCCcEEEeecCCCCC--c----ccccCcCCCcEEEeeCCcCc-----ccchhhcCCCCCCEEeccCCC
Q 016966 154 ----PSSL-GLLSNLRTLSLCSCGLPD--I----SFVGYLKKLEILCLRGSDIV-----KLPVEVGELTWLKLLDLRDCC 217 (379)
Q Consensus 154 ----p~~i-~~l~~L~~L~l~~~~l~~--~----~~~~~l~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~~~ 217 (379)
...+ ...++|++|++++|.++. . ..+..+++|++|++++|.+. .++..+...++|++|++++|.
T Consensus 143 ~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 143 CKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred HHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 1222 346889999999999876 2 34567899999999999887 345667788899999999987
Q ss_pred CCcccChh---hhCCCCCCcEEEecCCCCcChh
Q 016966 218 FLKVIPPN---ILSKLSHLEELYIGRESFVDWE 247 (379)
Q Consensus 218 ~~~~~~~~---~l~~l~~L~~L~l~~~~~~~~~ 247 (379)
....-... .+...++|++|++++|.+....
T Consensus 223 i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g 255 (372)
T 3un9_A 223 AGDTAALALARAAREHPSLELLHLYFNELSSEG 255 (372)
T ss_dssp CCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHH
Confidence 65432211 1456789999999999987654
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.86 E-value=1.1e-08 Score=92.41 Aligned_cols=165 Identities=12% Similarity=0.088 Sum_probs=124.1
Q ss_pred cCCccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC-----------
Q 016966 86 IKHFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI----------- 152 (379)
Q Consensus 86 ~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----------- 152 (379)
+++++.+.+.. .+..++. +..+++|+.+.+..|. ...+++..|..+.++..+......
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~--------i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~ 170 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKT--------APNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHF 170 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSS--------CCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTS
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCC--------ccccchhhhcCCCceEEecCcchhhhhcccccccc
Confidence 67888888887 6666665 4488899999998854 334566666666666666544411
Q ss_pred -------------------CCc----------c-----------------c-cCCCCCcEEEeecCCCCC-c-ccccCcC
Q 016966 153 -------------------LPS----------S-----------------L-GLLSNLRTLSLCSCGLPD-I-SFVGYLK 183 (379)
Q Consensus 153 -------------------lp~----------~-----------------i-~~l~~L~~L~l~~~~l~~-~-~~~~~l~ 183 (379)
++. . + ..+.+|+++++..|.++. + ..+..+.
T Consensus 171 ~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~ 250 (329)
T 3sb4_A 171 AFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKK 250 (329)
T ss_dssp CEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCT
T ss_pred ccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCC
Confidence 000 0 0 027899999999999888 4 6788999
Q ss_pred CCcEEEeeCCcCcccch-hhcCCCCCC-EEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhh
Q 016966 184 KLEILCLRGSDIVKLPV-EVGELTWLK-LLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEEL 261 (379)
Q Consensus 184 ~L~~L~l~~~~l~~lp~-~~~~l~~L~-~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l 261 (379)
+|+.+++..+ +..++. .+..+++|+ .+.+.+ .+..++...+..+++|+.+.+..+.+...+ ...+
T Consensus 251 ~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~----------~~aF 317 (329)
T 3sb4_A 251 YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKITTLG----------DELF 317 (329)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCCCEEC----------TTTT
T ss_pred CCCEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCccCccc----------hhhh
Confidence 9999999987 888876 578999999 999988 456777666999999999999888888764 5678
Q ss_pred cCCCCCcEEEe
Q 016966 262 KHLPNLTSLEV 272 (379)
Q Consensus 262 ~~l~~L~~L~l 272 (379)
..+++|+.+..
T Consensus 318 ~~~~~L~~ly~ 328 (329)
T 3sb4_A 318 GNGVPSKLIYK 328 (329)
T ss_dssp CTTCCCCEEEC
T ss_pred cCCcchhhhcc
Confidence 89999998864
No 144
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.83 E-value=9.8e-09 Score=93.68 Aligned_cols=239 Identities=15% Similarity=0.101 Sum_probs=130.0
Q ss_pred hHHHHHHHHHHHHHHHHHhccceeccc------cccCeEee-chhHHHHHHHHhhcccceEEecCCccccCcCCCCCCcc
Q 016966 14 KMEAARNRVHALVRTLKASCMLLDHES------EKEELFSM-HDVVRHVAISIASTKRNVFTATNEQVDGCREWSDGSTI 86 (379)
Q Consensus 14 ~~e~~~~~~~~~~~~L~~~~l~~~~~~------~~~~~~~~-hdl~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (379)
+.++|...+.+++.+=..||....... .....+.. .|- .....+-|... -.....
T Consensus 45 ~~~~a~~~~~~l~~~k~~kGy~~~~~~~~~~p~~~a~rl~~~~~~------~~~~~~~~~~f------------l~~~~~ 106 (362)
T 2ra8_A 45 SAGEAEKAAGKLIAEKTKKGYVETLEEVAKEMKVEAKKYALSYDE------AEEGVNLMDKI------------LKDKKL 106 (362)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCEECCHHHHHHCCCCEEEECCCHHH------HHTTCCHHHHH------------HHCTTG
T ss_pred CHHHHHHHHHHHHHHHHhcCCccccccCCCCchhhceEEEeecCC------cccHHHHHHHH------------hcCCCc
Confidence 567788888889988888887643221 01122222 110 00000000000 001233
Q ss_pred CCccEEEEeCCCCC--CC-------C-CCCCCCCccEEEeecCCCCCCCCCCC-cccChhhhhCCCceeEEEecCCC---
Q 016966 87 KHFTSIVLHGIKPN--LL-------P-EVLECPQLELLFIRGGGRDDPWETSP-VTIPDNFFKSMIEVRVVNLTDMI--- 152 (379)
Q Consensus 87 ~~l~~L~l~~~~~~--~~-------~-~~~~~~~L~~L~l~~n~~~~~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~--- 152 (379)
..++.|.+...... .. . ....+++|++|.+..+......-.++ ..-...++..+++|+.|.++++.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~ 186 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS 186 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence 46778877755432 11 1 12257889999886632211000001 01133556778889999998774
Q ss_pred CCccccCCCCCcEEEeecCCCCC--ccccc--CcCCCcEEEeeCC--c------Ccccchhh--cCCCCCCEEeccCCCC
Q 016966 153 LPSSLGLLSNLRTLSLCSCGLPD--ISFVG--YLKKLEILCLRGS--D------IVKLPVEV--GELTWLKLLDLRDCCF 218 (379)
Q Consensus 153 lp~~i~~l~~L~~L~l~~~~l~~--~~~~~--~l~~L~~L~l~~~--~------l~~lp~~~--~~l~~L~~L~l~~~~~ 218 (379)
++. +. +++|++|++..|.+.. ...+. .+++|++|+|+.+ . +..+...+ ..+++|++|++.+|..
T Consensus 187 l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i 264 (362)
T 2ra8_A 187 IGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEE 264 (362)
T ss_dssp CCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTT
T ss_pred ecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCC
Confidence 443 33 7788888888887765 44444 6788888888632 1 11222222 2467888888877665
Q ss_pred CcccChhh--hCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCC
Q 016966 219 LKVIPPNI--LSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVS 278 (379)
Q Consensus 219 ~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 278 (379)
....+..+ ...+++|++|+++.|.+.+.. ...+...+..+++|+.|+++.|.++
T Consensus 265 ~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G------~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 265 QNVVVEMFLESDILPQLETMDISAGVLTDEG------ARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp HHHHHHHHHHCSSGGGCSEEECCSSCCBHHH------HHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred chHHHHHHHhCccCCCCCEEECCCCCCChHH------HHHHHhhcccCCcceEEECCCCcCC
Confidence 44333221 135677888888777665432 1122333445677888888776544
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.82 E-value=1.2e-07 Score=87.91 Aligned_cols=182 Identities=15% Similarity=0.105 Sum_probs=101.3
Q ss_pred CccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCCC
Q 016966 88 HFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLSN 162 (379)
Q Consensus 88 ~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~~ 162 (379)
+++.+.+.. .+..++. +..|++|+.+.+..|. ...++...|. +.+|+.+.+..+- -...+..+.+
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~--------l~~I~~~aF~-~~~L~~l~lp~~l~~I~~~aF~~~~~ 227 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTK--------ITKLPASTFV-YAGIEEVLLPVTLKEIGSQAFLKTSQ 227 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSC--------CSEECTTTTT-TCCCSEEECCTTCCEECTTTTTTCTT
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCc--------ceEechhhEe-ecccCEEEeCCchheehhhHhhCCCC
Confidence 566676664 4444443 4477788888887643 4456666665 4677777776443 3345666667
Q ss_pred CcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCcccch-hhcCCCCCCEEeccCCCCC----cccChhhhCCCCCCcE
Q 016966 163 LRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIVKLPV-EVGELTWLKLLDLRDCCFL----KVIPPNILSKLSHLEE 235 (379)
Q Consensus 163 L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~----~~~~~~~l~~l~~L~~ 235 (379)
|+.+.+..+ ++. ...+.. .+|+.+.+. +.++.++. .+..+++|+.+.+.++... ..++...+..+++|+.
T Consensus 228 L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~ 304 (401)
T 4fdw_A 228 LKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLAR 304 (401)
T ss_dssp CCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCE
T ss_pred CCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCe
Confidence 777776653 333 233333 566666663 34555543 4556666777666553321 1344444666666666
Q ss_pred EEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCCCCCccc--cccCCcEEEEE
Q 016966 236 LYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVSSLPRGL--LLEKLERYSIY 295 (379)
Q Consensus 236 L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~ 295 (379)
+.+. +.+...+ ...+..|++|+.+.+.. .+..+.... .+ +|+.+.+.
T Consensus 305 l~l~-~~i~~I~----------~~aF~~c~~L~~l~lp~-~l~~I~~~aF~~~-~L~~l~l~ 353 (401)
T 4fdw_A 305 FEIP-ESIRILG----------QGLLGGNRKVTQLTIPA-NVTQINFSAFNNT-GIKEVKVE 353 (401)
T ss_dssp ECCC-TTCCEEC----------TTTTTTCCSCCEEEECT-TCCEECTTSSSSS-CCCEEEEC
T ss_pred EEeC-CceEEEh----------hhhhcCCCCccEEEECc-cccEEcHHhCCCC-CCCEEEEc
Confidence 6666 3344332 34556666666666633 344444332 35 66666664
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.73 E-value=3.8e-08 Score=89.61 Aligned_cols=99 Identities=19% Similarity=0.068 Sum_probs=82.9
Q ss_pred EEEecCC-C---CCccccCCCCCcEEEeec-CCCCC-c-ccccCcCCCcEEEeeCCcCcccch-hhcCCCCCCEEeccCC
Q 016966 145 VVNLTDM-I---LPSSLGLLSNLRTLSLCS-CGLPD-I-SFVGYLKKLEILCLRGSDIVKLPV-EVGELTWLKLLDLRDC 216 (379)
Q Consensus 145 ~L~l~~~-~---lp~~i~~l~~L~~L~l~~-~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~ 216 (379)
.++.+++ . +|. +..+.+|++|+|++ |.+.. + ..++.+++|++|+|++|.++.+|+ .+..+++|++|++++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4577777 4 888 99999999999996 99988 4 679999999999999999998775 6789999999999997
Q ss_pred CCCcccChhhhCCCCCCcEEEecCCCCcCh
Q 016966 217 CFLKVIPPNILSKLSHLEELYIGRESFVDW 246 (379)
Q Consensus 217 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 246 (379)
.. ..+|...+..++ |+.|++.+|.+...
T Consensus 91 ~l-~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 91 AL-ESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp CC-SCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred cc-ceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 65 466666456565 99999999988753
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.69 E-value=5.1e-08 Score=88.74 Aligned_cols=90 Identities=17% Similarity=0.102 Sum_probs=76.5
Q ss_pred CcccChhhhhCCCceeEEEecC-CC---CC-ccccCCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCcccchh
Q 016966 129 PVTIPDNFFKSMIEVRVVNLTD-MI---LP-SSLGLLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIVKLPVE 201 (379)
Q Consensus 129 ~~~~~~~~~~~l~~L~~L~l~~-~~---lp-~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~~ 201 (379)
...+|. +..+.+|++|+|++ |. +| ..+..|.+|++|+|++|.+.. +..+..+++|++|+|++|.++.+|..
T Consensus 21 l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 98 (347)
T 2ifg_A 21 LDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWK 98 (347)
T ss_dssp CTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCST
T ss_pred CCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHH
Confidence 556777 68899999999996 77 44 679999999999999999998 46789999999999999999999976
Q ss_pred hcCCCCCCEEeccCCCCCc
Q 016966 202 VGELTWLKLLDLRDCCFLK 220 (379)
Q Consensus 202 ~~~l~~L~~L~l~~~~~~~ 220 (379)
+.....|++|++.+|....
T Consensus 99 ~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 99 TVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp TTCSCCCCEEECCSSCCCC
T ss_pred HcccCCceEEEeeCCCccC
Confidence 6555559999999987543
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.47 E-value=6.7e-07 Score=81.55 Aligned_cols=82 Identities=16% Similarity=0.188 Sum_probs=42.6
Q ss_pred cccCCCCCcEEEeecCCCCC----------c-ccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccCCCCCcccCh
Q 016966 156 SLGLLSNLRTLSLCSCGLPD----------I-SFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRDCCFLKVIPP 224 (379)
Q Consensus 156 ~i~~l~~L~~L~l~~~~l~~----------~-~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~ 224 (379)
++..+++|+.|.+....... + ..+..+++|+.|+++++.-..++. + .+++|++|.+..|........
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHH
Confidence 34566788888776543211 1 223445677777776662223443 2 266677777665543322222
Q ss_pred hh-hCCCCCCcEEEec
Q 016966 225 NI-LSKLSHLEELYIG 239 (379)
Q Consensus 225 ~~-l~~l~~L~~L~l~ 239 (379)
.+ ...+|+|++|+++
T Consensus 212 ~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHSBCTTCCEEEEE
T ss_pred HHHHccCCCCcEEEEe
Confidence 11 1256667776664
No 149
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=98.34 E-value=4.4e-08 Score=94.83 Aligned_cols=61 Identities=7% Similarity=-0.005 Sum_probs=43.7
Q ss_pred Cccccc--cccccc---chHHHHHHHHHHHHHHHHHhccceeccccccCeEeechhHHHHHHHHhhcccc
Q 016966 1 MCGMGL--GLFQGV---NKMEAARNRVHALVRTLKASCMLLDHESEKEELFSMHDVVRHVAISIASTKRN 65 (379)
Q Consensus 1 ~~Wiae--g~i~~~---~~~e~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~hdl~~d~~~~~~~~~~~ 65 (379)
++|+|+ ||++.. .+.+++++ ++++|++|||++....+...+|+|||++||+|++++++++.
T Consensus 408 ~~w~a~~~G~i~~~~~~~~~~~~~~----~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 408 KLWSCVIPVDICSNEEEQLDDEVAD----RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHHHHSCC-------CCCTHHHHH----HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred eeeeeeccceeccCCCCCCHHHHHH----HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 369999 999753 23444433 78888889999987654567899999999999999887654
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.31 E-value=7.3e-07 Score=71.86 Aligned_cols=75 Identities=19% Similarity=0.288 Sum_probs=32.5
Q ss_pred ceeEEEecCCC----CCccccCCCCCcEEEeecCC-CCC--cccccCc----CCCcEEEeeCC-cCc--ccchhhcCCCC
Q 016966 142 EVRVVNLTDMI----LPSSLGLLSNLRTLSLCSCG-LPD--ISFVGYL----KKLEILCLRGS-DIV--KLPVEVGELTW 207 (379)
Q Consensus 142 ~L~~L~l~~~~----lp~~i~~l~~L~~L~l~~~~-l~~--~~~~~~l----~~L~~L~l~~~-~l~--~lp~~~~~l~~ 207 (379)
.|+.||+++|. --..+..+++|++|++++|. +++ ...++.+ ++|++|++++| +++ .+. .+.++++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII-ALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-HGGGCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-HHhcCCC
Confidence 45555555554 11123444455555555553 443 3444332 24555555544 243 111 2334444
Q ss_pred CCEEeccCCC
Q 016966 208 LKLLDLRDCC 217 (379)
Q Consensus 208 L~~L~l~~~~ 217 (379)
|++|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 4444444444
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.27 E-value=5.6e-07 Score=74.02 Aligned_cols=78 Identities=17% Similarity=0.134 Sum_probs=40.7
Q ss_pred hhhCCCceeEEEecCC-C--------CCccccCCCCCcEEEeecCCCCC--c----ccccCcCCCcEEEeeCCcCc----
Q 016966 136 FFKSMIEVRVVNLTDM-I--------LPSSLGLLSNLRTLSLCSCGLPD--I----SFVGYLKKLEILCLRGSDIV---- 196 (379)
Q Consensus 136 ~~~~l~~L~~L~l~~~-~--------lp~~i~~l~~L~~L~l~~~~l~~--~----~~~~~l~~L~~L~l~~~~l~---- 196 (379)
.+...+.|+.|+|++| . +...+...++|++|++++|.+.. . ..+...++|++|++++|.+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3455666666666666 4 23334445566666666666554 1 22333455666666665554
Q ss_pred -ccchhhcCCCCCCEEec
Q 016966 197 -KLPVEVGELTWLKLLDL 213 (379)
Q Consensus 197 -~lp~~~~~l~~L~~L~l 213 (379)
.+...+...+.|++|++
T Consensus 111 ~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 111 LALVEALQSNTSLIELRI 128 (185)
T ss_dssp HHHHHGGGGCSSCCEEEC
T ss_pred HHHHHHHHhCCCceEEEe
Confidence 13334444445555555
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.24 E-value=6.7e-07 Score=73.54 Aligned_cols=117 Identities=14% Similarity=0.086 Sum_probs=80.4
Q ss_pred ccccCCCCCcEEEeecC-CCCC--c----ccccCcCCCcEEEeeCCcCc-----ccchhhcCCCCCCEEeccCCCCCcc-
Q 016966 155 SSLGLLSNLRTLSLCSC-GLPD--I----SFVGYLKKLEILCLRGSDIV-----KLPVEVGELTWLKLLDLRDCCFLKV- 221 (379)
Q Consensus 155 ~~i~~l~~L~~L~l~~~-~l~~--~----~~~~~l~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~~~~- 221 (379)
..+...+.|++|++++| .+.. . ..+...++|++|++++|.+. .+...+...+.|++|++++|.....
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34566788888888888 7765 2 44556678888888888776 3444566667888888888765443
Q ss_pred ---cChhhhCCCCCCcEEEe--cCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccCCC
Q 016966 222 ---IPPNILSKLSHLEELYI--GRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRDVS 278 (379)
Q Consensus 222 ---~~~~~l~~l~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 278 (379)
+... +...++|++|++ ++|.+.... ...+...+...++|++|++++|.+.
T Consensus 110 ~~~l~~~-L~~n~~L~~L~L~~~~N~i~~~g------~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEA-LQSNTSLIELRIDNQSQPLGNNV------EMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHG-GGGCSSCCEEECCCCSSCCCHHH------HHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHH-HHhCCCceEEEecCCCCCCCHHH------HHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2222 566678888888 777776532 2234556666778888888887654
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.08 E-value=6e-06 Score=66.49 Aligned_cols=90 Identities=12% Similarity=0.115 Sum_probs=56.5
Q ss_pred CCccccCCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCC-cCcc-cchhhcCC----CCCCEEeccCCCCCcccCh
Q 016966 153 LPSSLGLLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGS-DIVK-LPVEVGEL----TWLKLLDLRDCCFLKVIPP 224 (379)
Q Consensus 153 lp~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~-~l~~-lp~~~~~l----~~L~~L~l~~~~~~~~~~~ 224 (379)
+|.....-.+|++|++++|.+++ ...+..+++|++|++++| .++. --..+..+ ++|++|++++|..+.+...
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 55433233468888888888766 677777888888888887 4551 11234443 3577777777765544333
Q ss_pred hhhCCCCCCcEEEecCCC
Q 016966 225 NILSKLSHLEELYIGRES 242 (379)
Q Consensus 225 ~~l~~l~~L~~L~l~~~~ 242 (379)
..+.++++|++|++++|.
T Consensus 133 ~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 133 IALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHGGGCTTCCEEEEESCT
T ss_pred HHHhcCCCCCEEECCCCC
Confidence 335667777777777665
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.03 E-value=4.9e-05 Score=70.19 Aligned_cols=32 Identities=13% Similarity=0.296 Sum_probs=17.2
Q ss_pred cccceeeccccccccccccccccccccCCCCcEEEec
Q 016966 330 QRIEDLELSELQEQDVDYFRNELVKVGSSHLKRLRLE 366 (379)
Q Consensus 330 ~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~ 366 (379)
.+|+.+.+..+ ++.++...+. ++++|+.+.+.
T Consensus 343 ~~L~~i~lp~~----l~~I~~~aF~-~C~~L~~i~lp 374 (394)
T 4fs7_A 343 TSLSNINFPLS----LRKIGANAFQ-GCINLKKVELP 374 (394)
T ss_dssp TTCCEECCCTT----CCEECTTTBT-TCTTCCEEEEE
T ss_pred CCCCEEEECcc----ccEehHHHhh-CCCCCCEEEEC
Confidence 55666665432 3455544442 46666666664
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.99 E-value=1.8e-06 Score=74.85 Aligned_cols=38 Identities=29% Similarity=0.413 Sum_probs=17.1
Q ss_pred CCCCcEEEeecCCCCCc----ccccCcCCCcEEEeeCCcCcc
Q 016966 160 LSNLRTLSLCSCGLPDI----SFVGYLKKLEILCLRGSDIVK 197 (379)
Q Consensus 160 l~~L~~L~l~~~~l~~~----~~~~~l~~L~~L~l~~~~l~~ 197 (379)
+++|+.|+|++|.+... ..+..+++|++|+|++|.++.
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~ 210 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS 210 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC
Confidence 44455555555544441 222344445555555444443
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.79 E-value=1.7e-05 Score=68.77 Aligned_cols=76 Identities=25% Similarity=0.260 Sum_probs=59.3
Q ss_pred hhCCCceeEEEecCCC------CCccccCCCCCcEEEeecCCCCCcccccCcC--CCcEEEeeCCcCc-ccc-------h
Q 016966 137 FKSMIEVRVVNLTDMI------LPSSLGLLSNLRTLSLCSCGLPDISFVGYLK--KLEILCLRGSDIV-KLP-------V 200 (379)
Q Consensus 137 ~~~l~~L~~L~l~~~~------lp~~i~~l~~L~~L~l~~~~l~~~~~~~~l~--~L~~L~l~~~~l~-~lp-------~ 200 (379)
..++++|+.|+|++|. +|..+..+++|++|+|++|.+.....+..+. +|++|++++|.+. .+| .
T Consensus 166 ~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 166 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred HhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 3568899999999998 3355668999999999999998855555555 8999999999886 344 2
Q ss_pred hhcCCCCCCEEe
Q 016966 201 EVGELTWLKLLD 212 (379)
Q Consensus 201 ~~~~l~~L~~L~ 212 (379)
.+..+|+|+.|+
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 356788888875
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.75 E-value=0.00019 Score=66.20 Aligned_cols=57 Identities=12% Similarity=0.206 Sum_probs=35.8
Q ss_pred CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCCCCcEEEeec
Q 016966 105 VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLSNLRTLSLCS 170 (379)
Q Consensus 105 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~~L~~L~l~~ 170 (379)
+..+.+|+++.+..+ ...++...|..+.+|+.+.+..+- ....+.++..|+.+.+..
T Consensus 158 F~~c~~L~~i~l~~~---------~~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 158 FATCESLEYVSLPDS---------METLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEFPN 217 (394)
T ss_dssp TTTCTTCCEEECCTT---------CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCCCT
T ss_pred hcccCCCcEEecCCc---------cceeccccccCCCCceEEEcCCCceEeCchhhccccccceeecCC
Confidence 447788888887652 445666777778888887776554 233445555555555443
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.73 E-value=0.0012 Score=60.75 Aligned_cols=121 Identities=14% Similarity=0.115 Sum_probs=64.1
Q ss_pred CccEEEEeCCCCCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CCccccCCCC
Q 016966 88 HFTSIVLHGIKPNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LPSSLGLLSN 162 (379)
Q Consensus 88 ~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~~ 162 (379)
.++.+.+-.+ +..+.. +..+.+|+++.+..|.-.. +..+....|..+..|+.+.+..+- -...+..+.+
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~-----l~~Ig~~aF~~c~~L~~i~~~~~~~~I~~~aF~~c~~ 138 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSC-----VKKIGRQAFMFCSELTDIPILDSVTEIDSEAFHHCEE 138 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCC-----CCEECTTTTTTCTTCCBCGGGTTCSEECTTTTTTCTT
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCe-----eeEechhhchhcccceeeccCCccceehhhhhhhhcc
Confidence 3666666543 444443 4467778887776532111 445566666666666666554443 2234556666
Q ss_pred CcEEEeecCCCCC-cccccCcCCCcEEEeeCCcCcccchhhcCCCCCCEEeccC
Q 016966 163 LRTLSLCSCGLPD-ISFVGYLKKLEILCLRGSDIVKLPVEVGELTWLKLLDLRD 215 (379)
Q Consensus 163 L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~ 215 (379)
|+.+.+..+...- ...+..+.+|+.+.+..+ +..+........+|+.+.+..
T Consensus 139 L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~ 191 (394)
T 4gt6_A 139 LDTVTIPEGVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPA 191 (394)
T ss_dssp CCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECT
T ss_pred cccccccceeeeecccceecccccccccccce-eeEeccccccccceeEEEECC
Confidence 7777665432111 244555666766666543 344443333334566665543
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.49 E-value=0.0028 Score=58.33 Aligned_cols=79 Identities=14% Similarity=0.176 Sum_probs=48.6
Q ss_pred CCccCCccEEEEeCCC---CCCCCC--CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC---CC
Q 016966 83 GSTIKHFTSIVLHGIK---PNLLPE--VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI---LP 154 (379)
Q Consensus 83 ~~~~~~l~~L~l~~~~---~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---lp 154 (379)
+..+.+++.+.+..+. +..++. +..+.+|+.+.+..+ ...+....|..+.+|+.+.+.... ..
T Consensus 83 F~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~---------~~~I~~~aF~~c~~L~~i~lp~~~~~I~~ 153 (394)
T 4gt6_A 83 FYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS---------VTEIDSEAFHHCEELDTVTIPEGVTSVAD 153 (394)
T ss_dssp TTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT---------CSEECTTTTTTCTTCCEEECCTTCCEECT
T ss_pred hhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc---------cceehhhhhhhhcccccccccceeeeecc
Confidence 3456788888887653 333433 336677777665442 555666667777888888776544 23
Q ss_pred ccccCCCCCcEEEeec
Q 016966 155 SSLGLLSNLRTLSLCS 170 (379)
Q Consensus 155 ~~i~~l~~L~~L~l~~ 170 (379)
..+..+..|+.+.+..
T Consensus 154 ~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 154 GMFSYCYSLHTVTLPD 169 (394)
T ss_dssp TTTTTCTTCCEEECCT
T ss_pred cceecccccccccccc
Confidence 3455566666666654
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.52 E-value=0.034 Score=50.56 Aligned_cols=126 Identities=9% Similarity=0.136 Sum_probs=61.2
Q ss_pred ChhhhhCCCceeEEEecCCC---CCccccCCCCCcEEEeecCCCCC--cccccCcCCCcEEEeeCCcCcccch-hhcCCC
Q 016966 133 PDNFFKSMIEVRVVNLTDMI---LPSSLGLLSNLRTLSLCSCGLPD--ISFVGYLKKLEILCLRGSDIVKLPV-EVGELT 206 (379)
Q Consensus 133 ~~~~~~~l~~L~~L~l~~~~---lp~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~ 206 (379)
....|..+.+|+.+.+...- ....+..+..|+.+.+..+ ++. ...+..+.+|+.+.+.. .+..++. .+..++
T Consensus 209 ~~~~f~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~ 286 (379)
T 4h09_A 209 TAYGFSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCS 286 (379)
T ss_dssp CTTTTTTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCT
T ss_pred eecccccccccceeeeccceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceecccccccccc
Confidence 33344555556655554433 2233445555665555443 222 23444555566665543 2444443 344556
Q ss_pred CCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEe
Q 016966 207 WLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEV 272 (379)
Q Consensus 207 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 272 (379)
+|+.+.+.++ .+..++...+.++.+|+.+.+. +.+...+ ..++..|++|+.+.+
T Consensus 287 ~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp-~~l~~I~----------~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 287 NLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLP-TALKTIQ----------VYAFKNCKALSTISY 340 (379)
T ss_dssp TCCEEEECCT-TCCEECTTTTTTCTTCCEEECC-TTCCEEC----------TTTTTTCTTCCCCCC
T ss_pred cccccccccc-ccceehhhhhcCCCCCCEEEcC-ccccEEH----------HHHhhCCCCCCEEEE
Confidence 6666665542 2344444445566666666654 2233221 234555566665555
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.21 E-value=0.12 Score=46.98 Aligned_cols=100 Identities=15% Similarity=0.124 Sum_probs=54.6
Q ss_pred CcCCCcEEEeeCCcCcccch-hhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCcChhhhhhcccccchH
Q 016966 181 YLKKLEILCLRGSDIVKLPV-EVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFVDWEEEVEGVKNASLE 259 (379)
Q Consensus 181 ~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 259 (379)
...+|+.+.+..+ +..+.. .+..+..|+.+.+..+ +..+....+..+.+|+.+.+.. .+...+ ..
T Consensus 215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~-~i~~i~----------~~ 280 (379)
T 4h09_A 215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYA-KVKTVP----------YL 280 (379)
T ss_dssp TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECC-CCSEEC----------TT
T ss_pred cccccceeeeccc-eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhccccccc-cceecc----------cc
Confidence 3445555555332 333332 3445666666666542 3444444456666677766652 233221 34
Q ss_pred hhcCCCCCcEEEeeccCCCCCCccc--cccCCcEEEE
Q 016966 260 ELKHLPNLTSLEVHVRDVSSLPRGL--LLEKLERYSI 294 (379)
Q Consensus 260 ~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l 294 (379)
.+..+++|+.+.+..+.++.++... .|.+|+.+.+
T Consensus 281 aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred ccccccccccccccccccceehhhhhcCCCCCCEEEc
Confidence 5566777777777666666665544 4677777665
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.92 E-value=0.0099 Score=48.60 Aligned_cols=59 Identities=15% Similarity=0.257 Sum_probs=28.6
Q ss_pred hCCCceeEEEecCC-C--------CCccccCCCCCcEEEeecCCCCC--c----ccccCcCCCcEEEeeCCcCc
Q 016966 138 KSMIEVRVVNLTDM-I--------LPSSLGLLSNLRTLSLCSCGLPD--I----SFVGYLKKLEILCLRGSDIV 196 (379)
Q Consensus 138 ~~l~~L~~L~l~~~-~--------lp~~i~~l~~L~~L~l~~~~l~~--~----~~~~~l~~L~~L~l~~~~l~ 196 (379)
.+-+.|+.|+|+++ . +.+.+..-..|+.|+|++|.+.+ - ..+..-+.|++|+|++|.+.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 34455666666654 2 22234444455555555555543 1 22223345555555555544
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.67 E-value=0.011 Score=48.26 Aligned_cols=117 Identities=10% Similarity=0.064 Sum_probs=71.1
Q ss_pred ccCCCCCcEEEeecC-CCCC------cccccCcCCCcEEEeeCCcCc-----ccchhhcCCCCCCEEeccCCCCCcccCh
Q 016966 157 LGLLSNLRTLSLCSC-GLPD------ISFVGYLKKLEILCLRGSDIV-----KLPVEVGELTWLKLLDLRDCCFLKVIPP 224 (379)
Q Consensus 157 i~~l~~L~~L~l~~~-~l~~------~~~~~~l~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~~~~~~~ 224 (379)
+.+-+.|++|+|+++ .+.. -..+..-+.|+.|+|++|.+. .+...+..=+.|++|+++.|.....-..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 345567888888875 6654 144555678888888888776 3444555556788888888765443222
Q ss_pred h---hhCCCCCCcEEEecCCCCcChhhhhhcccccchHhhcCCCCCcEEEeeccC
Q 016966 225 N---ILSKLSHLEELYIGRESFVDWEEEVEGVKNASLEELKHLPNLTSLEVHVRD 276 (379)
Q Consensus 225 ~---~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 276 (379)
. .+..-+.|+.|+++++...... . .....+...+..-+.|+.|+++.+.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig--~-~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLG--N-QVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCC--H-HHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcC--H-HHHHHHHHHHHhCCCcCeEeccCCC
Confidence 1 1344456888888754321111 0 0112345566666788888887654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.64 E-value=0.058 Score=40.84 Aligned_cols=55 Identities=20% Similarity=0.297 Sum_probs=33.4
Q ss_pred EEEeeCCcCc--ccchhhcCCCCCCEEeccCCCCCcccChhhhCCCCCCcEEEecCCCCc
Q 016966 187 ILCLRGSDIV--KLPVEVGELTWLKLLDLRDCCFLKVIPPNILSKLSHLEELYIGRESFV 244 (379)
Q Consensus 187 ~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 244 (379)
+++.++.+++ .+|..+. ++|++|++++|. +..++...+..+++|+.|++.+|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCee
Confidence 5566666665 6664322 356777777644 45555555666777777777777654
No 165
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=94.19 E-value=0.033 Score=58.94 Aligned_cols=44 Identities=11% Similarity=0.234 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhccceeccccccCeEeechhHHHHHHHHhhcc
Q 016966 20 NRVHALVRTLKASCMLLDHESEKEELFSMHDVVRHVAISIASTK 63 (379)
Q Consensus 20 ~~~~~~~~~L~~~~l~~~~~~~~~~~~~~hdl~~d~~~~~~~~~ 63 (379)
+.+.+++++|+++||++....++..+|+|||++|++++..+.++
T Consensus 409 ~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 409 EEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 44566888899999999776655667999999999999987755
No 166
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.16 E-value=0.084 Score=39.96 Aligned_cols=52 Identities=19% Similarity=0.211 Sum_probs=35.8
Q ss_pred EEEeecCCCC--C-cccccCcCCCcEEEeeCCcCcccchh-hcCCCCCCEEeccCCCC
Q 016966 165 TLSLCSCGLP--D-ISFVGYLKKLEILCLRGSDIVKLPVE-VGELTWLKLLDLRDCCF 218 (379)
Q Consensus 165 ~L~l~~~~l~--~-~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~ 218 (379)
.++.++..++ . |..+ ..+|++|+|++|.++.+|.. +..+++|++|++.+|..
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 5666666666 4 4332 23688888888888888764 56778888888887653
No 167
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=89.81 E-value=0.17 Score=51.82 Aligned_cols=34 Identities=18% Similarity=0.283 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhccceeccccccCeEeechhHHHHHH
Q 016966 22 VHALVRTLKASCMLLDHESEKEELFSMHDVVRHVAI 57 (379)
Q Consensus 22 ~~~~~~~L~~~~l~~~~~~~~~~~~~~hdl~~d~~~ 57 (379)
+.+++++|+++|||+... ....|+|||++++++.
T Consensus 404 Ae~~L~eLvdRSLLq~d~--~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 404 VMVVVNKLHKYSLVEKQP--KESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHHHHTSSSSSBCS--SSSEEBCCCHHHHHHH
T ss_pred HHHHHHHHHhhCCEEEeC--CCCEEEehHHHHHHhc
Confidence 455788899999999753 2578999999999663
No 168
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=86.35 E-value=0.65 Score=44.79 Aligned_cols=40 Identities=13% Similarity=0.213 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhccceeccccccCeEeechhHHHHHHHHh
Q 016966 21 RVHALVRTLKASCMLLDHESEKEELFSMHDVVRHVAISIA 60 (379)
Q Consensus 21 ~~~~~~~~L~~~~l~~~~~~~~~~~~~~hdl~~d~~~~~~ 60 (379)
.+.+++++|+++||++....+....|+||+++|+++....
T Consensus 410 ~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 410 EVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 4566888999999998665544568999999999999874
No 169
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=32.59 E-value=51 Score=23.00 Aligned_cols=22 Identities=14% Similarity=0.283 Sum_probs=10.5
Q ss_pred CcccChhhhhCCCceeEEEecC
Q 016966 129 PVTIPDNFFKSMIEVRVVNLTD 150 (379)
Q Consensus 129 ~~~~~~~~~~~l~~L~~L~l~~ 150 (379)
++.+....|.++..|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~ 29 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQP 29 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECT
T ss_pred cCEecHHHhcCCCCCcEEEcCC
Confidence 3344444455555555555443
No 170
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=26.79 E-value=85 Score=21.80 Aligned_cols=39 Identities=10% Similarity=0.043 Sum_probs=29.6
Q ss_pred CCCCCCccEEEeecCCCCCCCCCCCcccChhhhhCCCceeEEEecCCC
Q 016966 105 VLECPQLELLFIRGGGRDDPWETSPVTIPDNFFKSMIEVRVVNLTDMI 152 (379)
Q Consensus 105 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 152 (379)
+..|..|+++.+-.+ ++.+....|.++.+|+.+.+....
T Consensus 16 F~~c~~L~~i~iP~~---------v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 16 FAGNTVIREITVQPN---------IGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp TTTCTTCCCEEECTT---------SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred hcCCCCCcEEEcCCc---------hheEcHHHHhccCCccEEEEcCCC
Confidence 447888888888662 666777778888888888887763
Done!