BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016967
         (379 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P22120|VP62_MRDV Probable non-structural 36.3 kDa protein OS=Maize rough dwarf virus
           GN=S6 PE=4 SV=1
          Length = 309

 Score = 33.9 bits (76), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 47/120 (39%), Gaps = 6/120 (5%)

Query: 55  IRIPKDDESLLPLAAARTKNTPTGTKKVAFLFLTTTPLPLAPLWQLYFNRSNTNLYNI-- 112
           + +  DD S L L A R KN+P  T ++   F    PLP A L           ++N   
Sbjct: 44  VNLLSDDLSYLNLLATRIKNSPEDTAEIFDSF--DIPLPFAELLDQEIGDEWCEIHNFAD 101

Query: 113 --YVHADPTFKYDPPFSGVFSRRVIPSKPTLRFTPTLSSAARRLLAHALLRDPGNYMFAL 170
              V  +  F++           V+ S P + +T T   A   L+ H    D  NY  A+
Sbjct: 102 LRIVENENEFEFVSSHITRHLLIVLNSNPNILWTSTCLLAKLSLIQHVENFDVINYWEAM 161


>sp|Q2UGZ7|ATG1_ASPOR Serine/threonine-protein kinase atg1 OS=Aspergillus oryzae (strain
           ATCC 42149 / RIB 40) GN=atg1 PE=3 SV=1
          Length = 934

 Score = 33.5 bits (75), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 5/50 (10%)

Query: 200 KDEPGQ-YDRWAAR--GDNAMLPEVKLEDFR--IGSQFWVLTRKHARLVV 244
           + EPG   DR  AR  GD AML  V++ED +  I S  +++TRK +  V+
Sbjct: 884 RSEPGSGTDRGDARRDGDKAMLDGVRMEDRQVVIKSSIFIVTRKQSSFVL 933


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.139    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,467,968
Number of Sequences: 539616
Number of extensions: 7127229
Number of successful extensions: 15032
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 14998
Number of HSP's gapped (non-prelim): 43
length of query: 379
length of database: 191,569,459
effective HSP length: 119
effective length of query: 260
effective length of database: 127,355,155
effective search space: 33112340300
effective search space used: 33112340300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)