Query 016967
Match_columns 379
No_of_seqs 229 out of 467
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 04:26:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016967.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016967hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02485 Branch: Core-2/I-Bran 100.0 6.1E-47 1.3E-51 357.4 8.9 231 82-319 1-244 (244)
2 PLN03183 acetylglucosaminyltra 100.0 3.1E-44 6.8E-49 362.9 25.1 251 76-370 74-368 (421)
3 KOG0799 Branching enzyme [Carb 99.8 4.2E-20 9E-25 189.4 11.3 221 81-310 104-350 (439)
4 PF11992 DUF3488: Domain of un 22.1 92 0.002 31.0 3.5 22 9-30 159-180 (325)
5 KOG4783 Uncharacterized conser 19.5 1.1E+02 0.0024 25.5 2.8 20 7-26 31-50 (102)
6 TIGR03469 HonB hopene-associat 15.7 1.1E+03 0.024 23.5 10.2 116 77-197 37-167 (384)
7 PF14012 DUF4229: Protein of u 14.8 1.7E+02 0.0036 22.7 2.7 23 4-26 31-53 (69)
8 cd06439 CESA_like_1 CESA_like_ 14.1 7.7E+02 0.017 22.2 7.5 101 77-188 26-131 (251)
9 PF15202 Adipogenin: Adipogeni 13.6 1.3E+02 0.0029 23.5 1.8 18 10-27 16-33 (81)
10 PF07172 GRP: Glycine rich pro 13.0 1.3E+02 0.0029 24.7 1.8 14 13-26 7-20 (95)
No 1
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=100.00 E-value=6.1e-47 Score=357.36 Aligned_cols=231 Identities=25% Similarity=0.278 Sum_probs=147.5
Q ss_pred EEEEEeeCC-CCCcHHHHHHHHhcCCCCCeEEEEecCCCCCCCCCC------CCcccccccC-CcccccCCccHHHHHHH
Q 016967 82 VAFLFLTTT-PLPLAPLWQLYFNRSNTNLYNIYVHADPTFKYDPPF------SGVFSRRVIP-SKPTLRFTPTLSSAARR 153 (379)
Q Consensus 82 iAfLfLa~~-~l~l~~Lwe~ff~~~~~~~~sIYVH~D~k~~~~~~~------ssvF~~r~I~-~~~V~WG~~S~V~Aelr 153 (379)
||||||||+ +.++...|.+++. ++...+|||+|+|++..... ......+.++ +.+|.|||+|||+||++
T Consensus 1 iAylil~h~~~~~~~~~l~~~l~---~~~~~f~iHiD~k~~~~~~~~~~~~~~~~~nv~~v~~r~~v~WG~~S~v~A~l~ 77 (244)
T PF02485_consen 1 IAYLILAHKNDPEQLERLLRLLY---HPDNDFYIHIDKKSPDYFYEEIKKLISCFPNVHFVPKRVDVRWGGFSLVEATLN 77 (244)
T ss_dssp EEEEEEESS--HHHHHHHHHHH-----TTSEEEEEE-TTS-HHHHHHHHHHHCT-TTEEE-SS-----TTSHHHHHHHHH
T ss_pred CEEEEEecCCCHHHHHHHHHHhc---CCCCEEEEEEcCCCChHHHHHHHHhcccCCceeecccccccccCCccHHHHHHH
Confidence 799999986 7766555555544 46778899999996421110 1122224577 67999999999999999
Q ss_pred HHHHHHhcCCCCcEEEEecCCCcccCCcHHHHHHHhcC--CceeEEeccCCCCcc-cccccccccccCcCCccccccccc
Q 016967 154 LLAHALLRDPGNYMFALLSPSCIPIHPFDFTYRTLVNS--EKSFIEVLKDEPGQY-DRWAARGDNAMLPEVKLEDFRIGS 230 (379)
Q Consensus 154 LL~~ALl~d~~n~~FvLLSgsciPL~s~~~Iy~fL~~~--~~sFIe~~~~~~~~~-~R~~~Ry~~~m~p~i~~~~~rkGS 230 (379)
||+.|+..+++++|||||||+|+||+++++|++||..+ +.+||+....+.... +||..++...+.+.+...++++||
T Consensus 78 ll~~al~~~~~~~y~~llSg~D~Pl~s~~~i~~~l~~~~~~~~f~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~GS 157 (244)
T PF02485_consen 78 LLREALKRDGDWDYFILLSGQDYPLKSNEEIHEFLESNNGDNNFIESFSDEDPRESGRYNPRIYDPFRPFFRKRTLYKGS 157 (244)
T ss_dssp HHHHHHHH-S---EEEEEETTEEESS-HHHHHHHHHHTTT--B---BEE--GGGG-HHHHEEEETTEEEEEEEE--EEE-
T ss_pred HHHHHHhcCCCCcEEEEcccccccccchHHHHHHHHhcCCCCcceecccccccchhhcceeeeeeecccccccccccccc
Confidence 99999943789999999999999999999999999876 578898876432111 233222122233344445899999
Q ss_pred eeeEecHHHHHHHHhhhhhhHHhhccccccCCCCcCCCcchHHHHhhcc--CCCCCcCCceeeEecCCCCCCCccccccC
Q 016967 231 QFWVLTRKHARLVVSDRRIWDKFDKPCEYERRGSCYPEENYFPTLLHMR--DPRGCVPATLTHVDWSVNIDGHPREYQES 308 (379)
Q Consensus 231 QWfsLtR~~A~~Iv~d~~~~~~F~~~c~~~~~~~c~pDE~yfqTlL~~~--~~~~~~n~~ltyiDWs~~~~~hP~~~~~~ 308 (379)
|||+|||++|++|++|....+.|+++|+ .+|||||+||||+|.+. ....+.++++|||||++++++||++|+..
T Consensus 158 qW~~Ltr~~v~~il~~~~~~~~~~~~~~----~~~~pDE~ffqTll~n~~~~~~~~~~~~~r~i~W~~~~~~~p~~~~~~ 233 (244)
T PF02485_consen 158 QWFSLTRDFVEYILDDPNYRPKLKKYFR----FSLCPDESFFQTLLNNSGHFKDTIVNRNLRYIDWSRRGGCHPKTLTIC 233 (244)
T ss_dssp S--EEEHHHHHHHHH-HHHHHHHHHHT-----TSSSGGGTHHHHH--SSGGG-B-TTTSSSEEE-BTGT-SS---SSEEE
T ss_pred eeeEeeHHHHHHhhhhHHHHHHHHHhhc----CccCcchhhHHHhhcccchhcccccCCCEEEEECCCCCCCCCCeeeee
Confidence 9999999999999988889999999987 89999999999999987 45678899999999995578999999999
Q ss_pred CCCHHHHHHHH
Q 016967 309 DVGPELIMRLR 319 (379)
Q Consensus 309 Di~~eli~~ir 319 (379)
|++++.+..|+
T Consensus 234 ~~~~~d~~~~~ 244 (244)
T PF02485_consen 234 DLGPEDLPWLK 244 (244)
T ss_dssp E--GGGHHHH-
T ss_pred eeCHHHHHhhC
Confidence 99999888764
No 2
>PLN03183 acetylglucosaminyltransferase family protein; Provisional
Probab=100.00 E-value=3.1e-44 Score=362.93 Aligned_cols=251 Identities=20% Similarity=0.182 Sum_probs=184.9
Q ss_pred CCCCCcEEEEEeeC-CCC-CcHHHHHHHHhcCCCCCeEEEEecCCCCCCCCC---------------CCCcccccccCC-
Q 016967 76 PTGTKKVAFLFLTT-TPL-PLAPLWQLYFNRSNTNLYNIYVHADPTFKYDPP---------------FSGVFSRRVIPS- 137 (379)
Q Consensus 76 ~~~~~KiAfLfLa~-~~l-~l~~Lwe~ff~~~~~~~~sIYVH~D~k~~~~~~---------------~ssvF~~r~I~~- 137 (379)
+..+|||||||++| ++. ++++|...+ .++++.+|||+|+|++.... ..+|+ .+.+
T Consensus 74 ~~~~~r~AYLI~~h~~d~~~l~RLL~aL----YhprN~y~IHlDkKS~~~er~~l~~~v~~~~~~~~~~NV~---vl~k~ 146 (421)
T PLN03183 74 QDKLPRFAYLVSGSKGDLEKLWRTLRAL----YHPRNQYVVHLDLESPAEERLELASRVENDPMFSKVGNVY---MITKA 146 (421)
T ss_pred CCCCCeEEEEEEecCCcHHHHHHHHHHh----cCCCceEEEEecCCCChHHHHHHHHHhhccchhhccCcEE---EEecc
Confidence 44689999999998 664 777766554 56789999999999864210 12332 2343
Q ss_pred cccccCCccHHHHHHHHHHHHHhcCCCCcEEEEecCCCcccCCcHH-HHHHHh-cCCceeEEeccCCCCccc-cc-----
Q 016967 138 KPTLRFTPTLSSAARRLLAHALLRDPGNYMFALLSPSCIPIHPFDF-TYRTLV-NSEKSFIEVLKDEPGQYD-RW----- 209 (379)
Q Consensus 138 ~~V~WG~~S~V~AelrLL~~ALl~d~~n~~FvLLSgsciPL~s~~~-Iy~fL~-~~~~sFIe~~~~~~~~~~-R~----- 209 (379)
..|.|||+|||+||+++++.+|....+++|||+|||+|+||+++++ |+.|+. +.+++||+...+..+... |.
T Consensus 147 ~~V~WGG~S~V~AtL~~m~~LL~~~~~WDyfinLSGsDyPLkTqdelI~~F~~~nr~~NFI~~~s~~~wk~~~r~~~~i~ 226 (421)
T PLN03183 147 NLVTYRGPTMVANTLHACAILLKRSKDWDWFINLSASDYPLVTQDDLIHTFSTLDRNLNFIEHTSQLGWKEEKRAMPLII 226 (421)
T ss_pred eeeccCChHHHHHHHHHHHHHHhhCCCCCEEEEccCCcccccCHHHHHHHHHhCCCCceeeecccccccchhhhcceEEe
Confidence 4699999999999999999888546789999999999999999999 688885 457999997643211111 10
Q ss_pred -ccccc-----------cccCcCCccccccccceeeEecHHHHHHHHhh----hhhhHHhhccccccCCCCcCCCcchHH
Q 016967 210 -AARGD-----------NAMLPEVKLEDFRIGSQFWVLTRKHARLVVSD----RRIWDKFDKPCEYERRGSCYPEENYFP 273 (379)
Q Consensus 210 -~~Ry~-----------~~m~p~i~~~~~rkGSQWfsLtR~~A~~Iv~d----~~~~~~F~~~c~~~~~~~c~pDE~yfq 273 (379)
.+.|. .+.+| ...++++|||||+|||++|+||+.. .+....|.+. +++|||+|||
T Consensus 227 ~pgl~~~~ks~~~~~~~~R~~P--~~~~lf~GS~W~sLSR~fvey~l~~~dnlpr~ll~y~~~-------t~~pdE~fFq 297 (421)
T PLN03183 227 DPGLYSTNKSDIYWVTPRRSLP--TAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTN-------FVSSPEGYFH 297 (421)
T ss_pred cCceeecccchhhhhhhhccCC--ccccccCCCceEEecHHHHHHHHhcccchHHHHHHHHhc-------CCCCchHHHH
Confidence 01111 01111 1356889999999999999999963 2334445433 4699999999
Q ss_pred HHhhcc--CCCCCcCCceeeEecCCCCCCCccccccCCCCHHHHHHHHcCCCCcCCCCCCCCCCCCcCCCCCcEEEecCC
Q 016967 274 TLLHMR--DPRGCVPATLTHVDWSVNIDGHPREYQESDVGPELIMRLRNGRPRYGDDGTNGSDSTLRERHHPFLFARKFS 351 (379)
Q Consensus 274 TlL~~~--~~~~~~n~~ltyiDWs~~~~~hP~~~~~~Di~~eli~~ir~s~~~~~~~~~n~~~~~~~~~~~~~LFARKF~ 351 (379)
|+|.|. ..+++.|.++|||||+.+++.||++|+.+|+ ++|.+| .++|||||+
T Consensus 298 TVl~NS~~f~~t~vn~nLRyI~W~~~~~~~P~~l~~~D~-----~~l~~S---------------------~~lFARKFd 351 (421)
T PLN03183 298 TVICNVPEFAKTAVNHDLHYISWDNPPKQHPHTLSLNDT-----EKMIAS---------------------GAAFARKFR 351 (421)
T ss_pred HHHhhcccccccccCCceeEEecCCCCCCCCcccCHHHH-----HHHHhC---------------------CCccccCCC
Confidence 999996 3567789999999999533459999999998 456655 679999999
Q ss_pred cChHHHHHHHHhhhccccC
Q 016967 352 RGSIQRLLSIANDFIFKDQ 370 (379)
Q Consensus 352 ~~~~~~Ll~~~~~~~~~~~ 370 (379)
.+ +++|+.+++-+..+.
T Consensus 352 ~d--~~vl~~Id~~ll~r~ 368 (421)
T PLN03183 352 RD--DPVLDKIDKELLGRK 368 (421)
T ss_pred CC--hHHHHHHHHHHhCCC
Confidence 74 578888887766554
No 3
>KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism]
Probab=99.82 E-value=4.2e-20 Score=189.42 Aligned_cols=221 Identities=16% Similarity=0.096 Sum_probs=150.3
Q ss_pred cEEEEEeeCCCC-CcHHHHHHHHhcCCCCCeEEEEecCCCCCCCCC-----CCCcccccc-cC-CcccccCCccHHHHHH
Q 016967 81 KVAFLFLTTTPL-PLAPLWQLYFNRSNTNLYNIYVHADPTFKYDPP-----FSGVFSRRV-IP-SKPTLRFTPTLSSAAR 152 (379)
Q Consensus 81 KiAfLfLa~~~l-~l~~Lwe~ff~~~~~~~~sIYVH~D~k~~~~~~-----~ssvF~~r~-I~-~~~V~WG~~S~V~Ael 152 (379)
=+||+.+++++. .++ ++++.+-++++-.+||+|.++...+. -.+.|-|-. ++ +..|.|||.|++.|.+
T Consensus 104 ~~a~~~~v~kd~~~ve----rll~aiYhPqN~ycihvD~~s~~~fk~~~~~L~~cf~NV~v~~k~~~v~~~G~s~l~a~l 179 (439)
T KOG0799|consen 104 PAAFLRVVYKDYEQVE----RLLQAIYHPQNVYCIHVDAKSPPEFRVAMQQLASCFPNVIVLPKRESVTYGGHSILAAHL 179 (439)
T ss_pred ceEEEEeecccHHHHH----HHHHHHhCCcCcceEEECCCCCHHHHHHHHHHHhcCCceEEeccccceecCCchhhHHHH
Confidence 467777778876 454 44455556777789999999864321 123333322 33 4589999999999999
Q ss_pred HHHHHHHhcCCCCcEEEEecCCCcccCCcHHHHHHHhc-CCceeEEeccCCCCccccc---cc--c-cc----cccCcCC
Q 016967 153 RLLAHALLRDPGNYMFALLSPSCIPIHPFDFTYRTLVN-SEKSFIEVLKDEPGQYDRW---AA--R-GD----NAMLPEV 221 (379)
Q Consensus 153 rLL~~ALl~d~~n~~FvLLSgsciPL~s~~~Iy~fL~~-~~~sFIe~~~~~~~~~~R~---~~--R-y~----~~m~p~i 221 (379)
+.|+..+....+.+||+.|||+|+||+++.++-+.|.. ++.+||+......+...|+ .. + |- ..+.+.+
T Consensus 180 ~c~~~Ll~~~~~W~yfinLs~~D~PlkT~~elv~i~~~L~g~N~i~~~~~~~~~~~~~~k~~~~~~~~~~~~s~~~~~~l 259 (439)
T KOG0799|consen 180 NCLADLLKLSGDWDYFINLSNSDYPLKTNDELVRIFKILRGANFVEHTSEIGWKLNRKAKWDIIDLKYFRNKSPLPWVIL 259 (439)
T ss_pred HHHHHHHhcCCCCceeeeccCCCcccCCHHHHHHHHHHcCCcccccCcccccHHHhcccCCcccccchheecCCCccccC
Confidence 99999885455689999999999999999999999964 7888998743321111111 10 0 10 0010011
Q ss_pred c-cccccccceeeEecHHHHHHHHhhhhhhHHhhccccccCCCCcCCCcchHHHHhhccCCCCCcCCc--eeeEecCCC-
Q 016967 222 K-LEDFRIGSQFWVLTRKHARLVVSDRRIWDKFDKPCEYERRGSCYPEENYFPTLLHMRDPRGCVPAT--LTHVDWSVN- 297 (379)
Q Consensus 222 ~-~~~~rkGSQWfsLtR~~A~~Iv~d~~~~~~F~~~c~~~~~~~c~pDE~yfqTlL~~~~~~~~~n~~--ltyiDWs~~- 297 (379)
+ ..+.++||-|++|+|..|++++.... .+.+..+.+ ++..|||+|++|++.|.......+.+ +|++.|...
T Consensus 260 p~~~ki~~Gs~~~~LsR~fv~y~i~~~~-~~~ll~~~~----~t~~~dE~f~~Tl~~n~~~~~g~~~~~~lr~~~W~~~~ 334 (439)
T KOG0799|consen 260 PTALKLFKGSAWVSLSRAFVEYLISGNL-PRTLLMYYN----NTYSPDEGFFHTLQCNPFGMPGVFNDECLRYTNWDRKD 334 (439)
T ss_pred CCceEEEecceeEEEeHHHHHHHhcCcc-HHHHHHHHh----CccCcchhhhHhhhccccCCCCcccchhhcceeccccc
Confidence 1 34578999999999999999999833 334444443 67899999999999998322223344 899999841
Q ss_pred ---CCCCccccccCCC
Q 016967 298 ---IDGHPREYQESDV 310 (379)
Q Consensus 298 ---~~~hP~~~~~~Di 310 (379)
-+.||..++..|.
T Consensus 335 ~~~~~~~c~~~~~~~~ 350 (439)
T KOG0799|consen 335 VDPPKQHCHSLTVRDF 350 (439)
T ss_pred ccccccCCcccccccc
Confidence 2346777777775
No 4
>PF11992 DUF3488: Domain of unknown function (DUF3488); InterPro: IPR021878 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 323 to 339 amino acids in length. This domain is found associated with PF01841 from PFAM. This domain has a conserved PLW sequence motif. This domain contains 6 transmembrane helices.
Probab=22.07 E-value=92 Score=30.97 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=18.2
Q ss_pred HHHHHHHHHhHHHHHHhcCCCc
Q 016967 9 LFCALLLCLPFAIIFTINSPAA 30 (379)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~ 30 (379)
....+++++|+++++|+..||+
T Consensus 159 ~~~l~l~alpl~~vlFl~fPR~ 180 (325)
T PF11992_consen 159 ALKLLLQALPLALVLFLLFPRL 180 (325)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 3456788999999999999997
No 5
>KOG4783 consensus Uncharacterized conserved protein [Function unknown]
Probab=19.45 E-value=1.1e+02 Score=25.48 Aligned_cols=20 Identities=30% Similarity=0.893 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhHHHHHHhc
Q 016967 7 LSLFCALLLCLPFAIIFTIN 26 (379)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~ 26 (379)
++.+|+|.+.+|++.+|++.
T Consensus 31 lLfy~~lii~vPiatfF~lK 50 (102)
T KOG4783|consen 31 LLFYCSLIIGVPIATFFALK 50 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45589999999999999876
No 6
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=15.70 E-value=1.1e+03 Score=23.53 Aligned_cols=116 Identities=9% Similarity=-0.026 Sum_probs=62.7
Q ss_pred CCCCcEEEEEeeCCCC-CcHHHHHHHHhcCCCC-CeEEEEecCCCCCCCCCC-CCcc-------cccccCC--cccccCC
Q 016967 77 TGTKKVAFLFLTTTPL-PLAPLWQLYFNRSNTN-LYNIYVHADPTFKYDPPF-SGVF-------SRRVIPS--KPTLRFT 144 (379)
Q Consensus 77 ~~~~KiAfLfLa~~~l-~l~~Lwe~ff~~~~~~-~~sIYVH~D~k~~~~~~~-ssvF-------~~r~I~~--~~V~WG~ 144 (379)
...|+++.++-++++. .+.+..+.+.+. +.+ .+.|.|=-|.+.+.+... .+.. .-+.+.. .+..|+|
T Consensus 37 ~~~p~VSVIIpa~Ne~~~L~~~L~sL~~q-~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~G 115 (384)
T TIGR03469 37 EAWPAVVAVVPARNEADVIGECVTSLLEQ-DYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQPLPPGWSG 115 (384)
T ss_pred CCCCCEEEEEecCCcHhHHHHHHHHHHhC-CCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEecCCCCCCCCcc
Confidence 3567899999999854 688888888764 333 577777666554321000 0000 0012221 2334543
Q ss_pred ccHHHHHHHHHHHHHhcCCCCcEEEEecCCCcccCCcHHHHHHH---hcCCceeEE
Q 016967 145 PTLSSAARRLLAHALLRDPGNYMFALLSPSCIPIHPFDFTYRTL---VNSEKSFIE 197 (379)
Q Consensus 145 ~S~V~AelrLL~~ALl~d~~n~~FvLLSgsciPL~s~~~Iy~fL---~~~~~sFIe 197 (379)
...|-...++.|-..+++.++++++-..|.+ +.+.+.+.+ ..++...+.
T Consensus 116 --k~~A~n~g~~~A~~~~~~gd~llflDaD~~~--~p~~l~~lv~~~~~~~~~~vs 167 (384)
T TIGR03469 116 --KLWAVSQGIAAARTLAPPADYLLLTDADIAH--GPDNLARLVARARAEGLDLVS 167 (384)
T ss_pred --hHHHHHHHHHHHhccCCCCCEEEEECCCCCC--ChhHHHHHHHHHHhCCCCEEE
Confidence 3445555666664223346777777777765 455555544 334444443
No 7
>PF14012 DUF4229: Protein of unknown function (DUF4229)
Probab=14.80 E-value=1.7e+02 Score=22.65 Aligned_cols=23 Identities=17% Similarity=0.450 Sum_probs=18.1
Q ss_pred CchHHHHHHHHHHHhHHHHHHhc
Q 016967 4 PSPLSLFCALLLCLPFAIIFTIN 26 (379)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~ 26 (379)
|-.+.+.+|++++.|+.++++-.
T Consensus 31 p~~~~~l~A~vis~~lS~~ll~~ 53 (69)
T PF14012_consen 31 PLLVAALLALVISMPLSYVLLRR 53 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44467799999999998888754
No 8
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=14.10 E-value=7.7e+02 Score=22.23 Aligned_cols=101 Identities=10% Similarity=0.019 Sum_probs=57.2
Q ss_pred CCCCcEEEEEeeCCCC-CcHHHHHHHHhcCC-CCCeEEEEecCCCCCCCCCCCCccc---ccccCCcccccCCccHHHHH
Q 016967 77 TGTKKVAFLFLTTTPL-PLAPLWQLYFNRSN-TNLYNIYVHADPTFKYDPPFSGVFS---RRVIPSKPTLRFTPTLSSAA 151 (379)
Q Consensus 77 ~~~~KiAfLfLa~~~l-~l~~Lwe~ff~~~~-~~~~sIYVH~D~k~~~~~~~ssvF~---~r~I~~~~V~WG~~S~V~Ae 151 (379)
...|+++.++.+++.. .+++..+.+++... +..+.|.|..|.+.+.......-+. -+.+.. .. ..+...|-
T Consensus 26 ~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~v~~i~~--~~--~~g~~~a~ 101 (251)
T cd06439 26 AYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADKGVKLLRF--PE--RRGKAAAL 101 (251)
T ss_pred CCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhCcEEEEEc--CC--CCChHHHH
Confidence 4678999999999864 56666666655311 1237899998876642110000010 011111 11 22345554
Q ss_pred HHHHHHHHhcCCCCcEEEEecCCCcccCCcHHHHHHH
Q 016967 152 RRLLAHALLRDPGNYMFALLSPSCIPIHPFDFTYRTL 188 (379)
Q Consensus 152 lrLL~~ALl~d~~n~~FvLLSgsciPL~s~~~Iy~fL 188 (379)
...++.| ..++++++-+.|+|- .+.+...+
T Consensus 102 n~gi~~a-----~~d~i~~lD~D~~~~--~~~l~~l~ 131 (251)
T cd06439 102 NRALALA-----TGEIVVFTDANALLD--PDALRLLV 131 (251)
T ss_pred HHHHHHc-----CCCEEEEEccccCcC--HHHHHHHH
Confidence 4444433 248999999999985 56666555
No 9
>PF15202 Adipogenin: Adipogenin
Probab=13.62 E-value=1.3e+02 Score=23.47 Aligned_cols=18 Identities=28% Similarity=0.704 Sum_probs=12.7
Q ss_pred HHHHHHHHhHHHHHHhcC
Q 016967 10 FCALLLCLPFAIIFTINS 27 (379)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~ 27 (379)
++..-||||+++++++.+
T Consensus 16 flvfwlclpv~lllfl~i 33 (81)
T PF15202_consen 16 FLVFWLCLPVGLLLFLLI 33 (81)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344568999988877653
No 10
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=13.03 E-value=1.3e+02 Score=24.75 Aligned_cols=14 Identities=43% Similarity=0.565 Sum_probs=6.4
Q ss_pred HHHHHhHHHHHHhc
Q 016967 13 LLLCLPFAIIFTIN 26 (379)
Q Consensus 13 ~~~~~~~~~~~~~~ 26 (379)
|||+|.||+++++.
T Consensus 7 llL~l~LA~lLlis 20 (95)
T PF07172_consen 7 LLLGLLLAALLLIS 20 (95)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
Done!