Query 016967
Match_columns 379
No_of_seqs 229 out of 467
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 06:45:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016967.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016967hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gak_A Beta-1,6-N-acetylglucos 100.0 5.1E-53 1.7E-57 425.3 14.6 261 78-374 82-389 (391)
2 2kix_A BM2 protein; channel, t 15.6 2E+02 0.0069 17.8 3.6 24 1-24 1-24 (33)
3 2crg_A Metastasis associated p 10.8 80 0.0028 23.2 0.9 38 149-188 13-50 (70)
4 1uuz_A IVY, inhibitor of verte 9.2 4.3E+02 0.015 22.1 5.0 49 107-165 78-128 (137)
5 2yqk_A Arginine-glutamic acid 9.2 75 0.0026 22.8 0.2 38 149-188 14-51 (63)
6 3hqc_A Tensin-like C1 domain-c 8.8 1.5E+02 0.0051 25.5 2.0 33 341-373 119-151 (157)
7 2fy7_A Beta-1,4-galactosyltran 6.4 1.3E+03 0.043 20.9 7.5 80 78-181 63-146 (287)
8 1wvh_A Tensin, tensin1; beta s 6.3 2.5E+02 0.0087 23.4 2.3 26 341-366 108-133 (134)
9 1fjk_A Cardiac phospholamban; 5.8 4.6E+02 0.016 17.9 2.9 16 7-22 32-47 (52)
10 3arc_L Photosystem II reaction 5.7 4.6E+02 0.016 17.0 2.7 18 7-24 15-32 (37)
No 1
>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A*
Probab=100.00 E-value=5.1e-53 Score=425.27 Aligned_cols=261 Identities=16% Similarity=0.174 Sum_probs=206.4
Q ss_pred CCCcEEEEEeeCCCCCcHHHHHHHHhcCCCCCeEEEEecCCCCCCCC----C-CCCccccccc--CCcccccCCccHHHH
Q 016967 78 GTKKVAFLFLTTTPLPLAPLWQLYFNRSNTNLYNIYVHADPTFKYDP----P-FSGVFSRRVI--PSKPTLRFTPTLSSA 150 (379)
Q Consensus 78 ~~~KiAfLfLa~~~l~l~~Lwe~ff~~~~~~~~sIYVH~D~k~~~~~----~-~ssvF~~r~I--~~~~V~WG~~S~V~A 150 (379)
.++||||||++|++. +.|+++++++.++.+.+|||+|+|++..+ . ..+.|.+..| ++..|.|||+|||+|
T Consensus 82 ~~~kiAflil~h~d~---~~l~rll~~ly~p~n~y~IHvD~ks~~~~~~~~~~~~~~f~NV~v~~~~~~v~WGg~S~v~A 158 (391)
T 2gak_A 82 VGFPIAYSIVVHHKI---EMLDRLLRAIYMPQNFYCIHVDRKAEESFLAAVQGIASCFDNVFVASQLESVVYASWTRVKA 158 (391)
T ss_dssp HTSCEEEEEEECSCH---HHHHHHHHHHCCTTSEEEEEECTTSCHHHHHHHHHHHHTCTTEEECSSCCCCCTTSHHHHHH
T ss_pred cCCCEEEEEEecCCH---HHHHHHHHHHhCCCCeEEEEEeCCCCHHHHHHHHHHHhcCCCEEEeccCcccccCCchHHHH
Confidence 358999999999965 66788888877889999999999985321 0 1234555555 357999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCCCcccCCcHHHHHHHhc-CCceeEEeccCCCCcccccccccc------------ccc
Q 016967 151 ARRLLAHALLRDPGNYMFALLSPSCIPIHPFDFTYRTLVN-SEKSFIEVLKDEPGQYDRWAARGD------------NAM 217 (379)
Q Consensus 151 elrLL~~ALl~d~~n~~FvLLSgsciPL~s~~~Iy~fL~~-~~~sFIe~~~~~~~~~~R~~~Ry~------------~~m 217 (379)
|++||+.||+.+.+++|||+|||+|+||+++++|++||+. .+++||++..++.+..+|+..+|. ..+
T Consensus 159 ~l~ll~~aL~~~~~w~yfilLSgsD~PLkt~~~i~~~l~~~~~~nFIe~~~~~~~~~~R~~~~~~~~~~~l~~~~~~k~~ 238 (391)
T 2gak_A 159 DLNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLKCSTGENNLETEKMPPNKEERWKKRYAVVDGKLTNTGIVKAP 238 (391)
T ss_dssp HHHHHHHHHHHCSCCCEEEEEETTCEESSCHHHHHHHHHHTTTCCBCCBEECCGGGSHHHHEEEEEETTEEEEEEEECCC
T ss_pred HHHHHHHHHhcCCCCCEEEEecCCCccccCHHHHHHHHHhcCCCceeeccCCCcccccceEeeeeccccceeeecccccC
Confidence 9999999996566999999999999999999999999985 689999988653322344332221 123
Q ss_pred CcCCccccccccceeeEecHHHHHHHHhhhhhhHHhhccccccCCCCcCCCcchHHHHhhccC-CCC----------CcC
Q 016967 218 LPEVKLEDFRIGSQFWVLTRKHARLVVSDRRIWDKFDKPCEYERRGSCYPEENYFPTLLHMRD-PRG----------CVP 286 (379)
Q Consensus 218 ~p~i~~~~~rkGSQWfsLtR~~A~~Iv~d~~~~~~F~~~c~~~~~~~c~pDE~yfqTlL~~~~-~~~----------~~n 286 (379)
.|. ..+|++|||||+|||++|++|++|.. .++|.++|+ ++|+||||||||++.+.+ +.. ..|
T Consensus 239 ~P~--~~~~~~GSqW~~LtR~~v~~vl~d~~-~~~~~~~~k----~t~~pDE~ffqTll~~~~~pg~~~~~~~~~~~~~~ 311 (391)
T 2gak_A 239 PPL--KTPLFSGSAYFVVTREYVGYVLENEN-IQKLMEWAQ----DTYSPDEFLWATIQRIPEVPGSFPSSNKYDLSDMN 311 (391)
T ss_dssp CSC--SSCCEECCSCCEEEHHHHHHHHHCHH-HHHHHHHHT----TSSSGGGTHHHHHTTSTTSTTCCCSSGGGCBCTTT
T ss_pred Ccc--ccceecccceeEecHHHHHHHHhCCc-HHHHHHHHc----CCcCCchhHHHHHhhccCCCCcccccccccccccc
Confidence 343 45899999999999999999999864 678888998 999999999999998864 221 247
Q ss_pred CceeeEecCC------CCCCCcc----------ccccCCCCHHHHHHHHcCCCCcCCCCCCCCCCCCcCCCCCcEEEecC
Q 016967 287 ATLTHVDWSV------NIDGHPR----------EYQESDVGPELIMRLRNGRPRYGDDGTNGSDSTLRERHHPFLFARKF 350 (379)
Q Consensus 287 ~~ltyiDWs~------~~~~hP~----------~~~~~Di~~eli~~ir~s~~~~~~~~~n~~~~~~~~~~~~~LFARKF 350 (379)
+++|||+|+. +|++||. +|+.+|+ +.|+++ ++||||||
T Consensus 312 ~~lr~i~W~~~~g~~~~G~p~p~c~~~~~~~~C~~~~~Dl-----~~l~~s---------------------~~lFARKF 365 (391)
T 2gak_A 312 AIARFVKWQYFEGDVSNGAPYPPCSGVHVRSVCVFGAGDL-----SWMLRQ---------------------HHLFANKF 365 (391)
T ss_dssp SSSEEECBTTTCSCGGGTCSSCCCSSEEETTEEECCGGGH-----HHHTTS---------------------CCSEEECC
T ss_pred CceEEEEecccCCccccCCCCCCCccceecceeeecHHHH-----HHHHhC---------------------CCceEEcc
Confidence 8999999973 2344777 8999997 466655 79999999
Q ss_pred CcChHHHHHHHHhhhccccCCCCc
Q 016967 351 SRGSIQRLLSIANDFIFKDQDEGS 374 (379)
Q Consensus 351 ~~~~~~~Ll~~~~~~~~~~~~~~~ 374 (379)
+++++.++++.+++.+.+....|+
T Consensus 366 ~~~~d~~~l~~l~~~l~~r~~~~~ 389 (391)
T 2gak_A 366 DMDVDPFAIQCLDEHLRRKALENL 389 (391)
T ss_dssp CTTTCHHHHHHHHHHHHHHHHC--
T ss_pred CCccCHHHHHHHHHHHhhhhhccc
Confidence 999999999999999887765554
No 2
>2kix_A BM2 protein; channel, transport protein; NMR {Influenza b virus}
Probab=15.61 E-value=2e+02 Score=17.85 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=18.4
Q ss_pred CCCCchHHHHHHHHHHHhHHHHHH
Q 016967 1 MLSPSPLSLFCALLLCLPFAIIFT 24 (379)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (379)
||-|-.++-.|++.||.--.+-.|
T Consensus 1 mlep~qilsi~sfilsalhf~awt 24 (33)
T 2kix_A 1 MLEPFQILSISSFILSALHFIAWT 24 (33)
T ss_dssp CCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999876433333
No 3
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=10.78 E-value=80 Score=23.20 Aligned_cols=38 Identities=13% Similarity=0.174 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEecCCCcccCCcHHHHHHH
Q 016967 149 SAARRLLAHALLRDPGNYMFALLSPSCIPIHPFDFTYRTL 188 (379)
Q Consensus 149 ~AelrLL~~ALl~d~~n~~FvLLSgsciPL~s~~~Iy~fL 188 (379)
+.|.+++..||...+.+ |+.|+...+|-++..+|-.|.
T Consensus 13 ~eE~~~Fe~~l~~yGKd--f~~I~~~~v~~Kt~~~~v~fY 50 (70)
T 2crg_A 13 ASEACLFEEALEKYGKD--FNDIRQDFLPWKSLTSIIEYY 50 (70)
T ss_dssp HHHHHHHHHHHHHTCSC--HHHHHHTTCSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcc--HHHHHHHHcCCCCHHHHHHHH
Confidence 57788999998665553 899986679999999998886
No 4
>1uuz_A IVY, inhibitor of vertebrate lysozyme; hydrolase/inhibitor, lysozyme/inhibitor complex, IVY, type-C lysozyme inhibitor, hydrolase; 1.8A {Pseudomonas aeruginosa} SCOP: d.233.1.1
Probab=9.16 E-value=4.3e+02 Score=22.11 Aligned_cols=49 Identities=20% Similarity=0.135 Sum_probs=30.0
Q ss_pred CCCeEEEEecCCCC-CCCCCCCCcccccccCCccccc-CCccHHHHHHHHHHHHHhcCCCC
Q 016967 107 TNLYNIYVHADPTF-KYDPPFSGVFSRRVIPSKPTLR-FTPTLSSAARRLLAHALLRDPGN 165 (379)
Q Consensus 107 ~~~~sIYVH~D~k~-~~~~~~ssvF~~r~I~~~~V~W-G~~S~V~AelrLL~~ALl~d~~n 165 (379)
..-|.+||+++.+. ......+.. -...| |..+ ++++.||+++|.+|+..
T Consensus 78 ~~a~Gl~v~v~d~~~~a~~~Ps~~--------a~~~WLG~Pd--d~~q~lL~~ql~~dp~~ 128 (137)
T 1uuz_A 78 SAAYGLQVSLPDEPAEVMQTPSKY--------ATYRWYGEPS--RQVRELLMKQLESDPNW 128 (137)
T ss_dssp SCEEEEEEECCSCTTTTTTCGGGT--------CEEEEESCCC--HHHHHHHHHHHHTSTTC
T ss_pred CeEEEEEEecCCCccccccCcchh--------heeEeeCCCC--HHHHHHHHHHHhcCCCc
Confidence 34577788877664 221111111 23556 5566 89999999999777754
No 5
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=9.16 E-value=75 Score=22.78 Aligned_cols=38 Identities=11% Similarity=0.035 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEecCCCcccCCcHHHHHHH
Q 016967 149 SAARRLLAHALLRDPGNYMFALLSPSCIPIHPFDFTYRTL 188 (379)
Q Consensus 149 ~AelrLL~~ALl~d~~n~~FvLLSgsciPL~s~~~Iy~fL 188 (379)
+.|.+++..||...+.+ |+.|+...+|-++..+|-+|.
T Consensus 14 ~eE~~~Fe~~l~~yGKd--f~~I~~~~v~~Kt~~~~v~fY 51 (63)
T 2yqk_A 14 EDEVKRFVKGLRQYGKN--FFRIRKELLPNKETGELITFY 51 (63)
T ss_dssp HHHHHHHHHHHHHTCSC--HHHHHHHSCTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcc--HHHHHHHHcCCCcHHHHHHHH
Confidence 57889999998665553 788877679999999998885
No 6
>3hqc_A Tensin-like C1 domain-containing phosphatase; TENC1, phosphotyrosine binding domain, PTB, TNS2, KIAA1075, struct genomics, PSI-2; 1.80A {Homo sapiens} SCOP: b.55.1.2 PDB: 2loz_A 2dkq_A
Probab=8.76 E-value=1.5e+02 Score=25.54 Aligned_cols=33 Identities=15% Similarity=0.246 Sum_probs=25.0
Q ss_pred CCCcEEEecCCcChHHHHHHHHhhhccccCCCC
Q 016967 341 HHPFLFARKFSRGSIQRLLSIANDFIFKDQDEG 373 (379)
Q Consensus 341 ~~~~LFARKF~~~~~~~Ll~~~~~~~~~~~~~~ 373 (379)
+.|++||..=...-...|.+.+.++|-..+.+|
T Consensus 119 n~CHlFae~dp~QPAsaIvnfv~kv~~~~~~~~ 151 (157)
T 3hqc_A 119 NVCHLFAELDPDQPAGAIVTFITKVMLGQRKEG 151 (157)
T ss_dssp EEEEEEECCBTTBCHHHHHHHHHHHHHC-----
T ss_pred eeEEEeeccCCCCCHHHHHHHHHHHhcCCCccc
Confidence 349999999888888999999999997666555
No 7
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=6.44 E-value=1.3e+03 Score=20.86 Aligned_cols=80 Identities=19% Similarity=0.142 Sum_probs=49.0
Q ss_pred CCCcEEEEEeeCCC-CCcHHHHHHHH---hcCCCCCeEEEEecCCCCCCCCCCCCcccccccCCcccccCCccHHHHHHH
Q 016967 78 GTKKVAFLFLTTTP-LPLAPLWQLYF---NRSNTNLYNIYVHADPTFKYDPPFSGVFSRRVIPSKPTLRFTPTLSSAARR 153 (379)
Q Consensus 78 ~~~KiAfLfLa~~~-l~l~~Lwe~ff---~~~~~~~~sIYVH~D~k~~~~~~~ssvF~~r~I~~~~V~WG~~S~V~Aelr 153 (379)
..+||+.+|-+++. ..+....+.+. +. ....|.|+|-=| ..+ . +++...|--.
T Consensus 63 ~~~~VSIIIP~yN~~~~L~~~L~sl~~~l~q-~~~~~EIiVVdd-s~d------~---------------~f~~a~a~N~ 119 (287)
T 2fy7_A 63 SPHKVAIIIPFRNRQEHLKYWLYYLHPVLQR-QQLDYGIYVINQ-AGD------T---------------IFNRAKLLNV 119 (287)
T ss_dssp CSCEEEEEEEESSCHHHHHHHHHHHHHHHHH-TTCEEEEEEEEE-CSS------S---------------CCCHHHHHHH
T ss_pred cCCcEEEEEeeCCCHHHHHHHHHHHHHHHHH-hcCCceEEEEEe-CCC------C---------------ccchhhhhhh
Confidence 45899999999975 46777776665 22 345677776433 111 0 1122222222
Q ss_pred HHHHHHhcCCCCcEEEEecCCCcccCCc
Q 016967 154 LLAHALLRDPGNYMFALLSPSCIPIHPF 181 (379)
Q Consensus 154 LL~~ALl~d~~n~~FvLLSgsciPL~s~ 181 (379)
.+..|+ +....+|++++-+.|+|..+.
T Consensus 120 G~~~al-~~A~gd~i~flD~D~i~~~d~ 146 (287)
T 2fy7_A 120 GFQEAL-KDYDYTCFVFSDVDLIPMNDH 146 (287)
T ss_dssp HHHHHH-HHSCCCEEEEECTTEEESBTT
T ss_pred HHHHHH-HhCCCCEEEEECCCcccCCCc
Confidence 333444 234679999999999998774
No 8
>1wvh_A Tensin, tensin1; beta sandwich, cell adhesion; 1.50A {Gallus gallus} SCOP: b.55.1.2 PDB: 2gjy_A
Probab=6.34 E-value=2.5e+02 Score=23.39 Aligned_cols=26 Identities=12% Similarity=0.142 Sum_probs=23.0
Q ss_pred CCCcEEEecCCcChHHHHHHHHhhhc
Q 016967 341 HHPFLFARKFSRGSIQRLLSIANDFI 366 (379)
Q Consensus 341 ~~~~LFARKF~~~~~~~Ll~~~~~~~ 366 (379)
..||+||..=...-...+.+.+.++|
T Consensus 108 n~CHvF~e~d~~qpa~~Iv~~v~~~~ 133 (134)
T 1wvh_A 108 NVCHLFAELDPDQPAAAIVNFVSRVM 133 (134)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eeEEEecccCCCCCHHHHHHHHHhhc
Confidence 34999999999899999999999887
No 9
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=5.84 E-value=4.6e+02 Score=17.91 Aligned_cols=16 Identities=31% Similarity=0.606 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHhHHHH
Q 016967 7 LSLFCALLLCLPFAII 22 (379)
Q Consensus 7 ~~~~~~~~~~~~~~~~ 22 (379)
|+=+|..|+||-++.+
T Consensus 32 fvnfclilicllli~i 47 (52)
T 1fjk_A 32 FINFCLILIFLLLICI 47 (52)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5567888888876544
No 10
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=5.74 E-value=4.6e+02 Score=16.98 Aligned_cols=18 Identities=44% Similarity=0.752 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhHHHHHH
Q 016967 7 LSLFCALLLCLPFAIIFT 24 (379)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~ 24 (379)
-+|+..|||-+-+|++|.
T Consensus 15 TSLy~GLLlifvlavlFs 32 (37)
T 3arc_L 15 TSLYLGLLLILVLALLFS 32 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhh
Confidence 367888888777777775
Done!