Query 016967
Match_columns 379
No_of_seqs 229 out of 467
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 06:45:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016967.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016967hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qg8a_ c.68.1.1 (A:) Spore co 22.4 1.5E+02 0.011 23.4 8.4 111 80-196 1-122 (255)
2 d2qalc1 d.52.3.1 (C:1-105) Rib 15.1 31 0.0023 25.8 1.8 30 229-258 18-47 (105)
3 d1r5la1 a.5.3.1 (A:25-90) Alph 12.0 12 0.00091 25.6 -1.4 19 343-361 30-48 (66)
4 d2uubc1 d.52.3.1 (C:2-106) Rib 9.9 36 0.0026 25.3 0.6 30 229-258 18-47 (105)
5 d1olma1 a.5.3.1 (A:1-75) Super 8.6 20 0.0015 24.8 -1.4 18 343-360 40-57 (75)
6 d1c9fa_ d.15.2.1 (A:) Caspase- 8.6 29 0.0021 25.3 -0.5 16 262-278 54-69 (87)
7 d1ibxa_ d.15.2.1 (A:) Caspase- 7.8 34 0.0025 24.6 -0.4 16 262-278 51-66 (81)
8 d1d1qa_ c.44.1.1 (A:) Tyrosine 7.1 1.7E+02 0.012 22.0 3.7 27 78-104 2-28 (159)
9 d2axtt1 f.23.34.1 (T:1-30) Pho 6.4 2.4E+02 0.017 15.7 3.1 13 7-19 6-18 (30)
10 d1auaa1 a.5.3.1 (A:4-96) N-ter 6.3 31 0.0022 25.1 -1.4 18 343-360 57-74 (93)
No 1
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}
Probab=22.44 E-value=1.5e+02 Score=23.42 Aligned_cols=111 Identities=12% Similarity=0.067 Sum_probs=60.9
Q ss_pred CcEEEEEeeCC-CCCcHHHHHHHHhcCCCCCeEEEEecCCCCCCCCCC-CCccc---ccccCCccccc----CCccHHHH
Q 016967 80 KKVAFLFLTTT-PLPLAPLWQLYFNRSNTNLYNIYVHADPTFKYDPPF-SGVFS---RRVIPSKPTLR----FTPTLSSA 150 (379)
Q Consensus 80 ~KiAfLfLa~~-~l~l~~Lwe~ff~~~~~~~~sIYVH~D~k~~~~~~~-ssvF~---~r~I~~~~V~W----G~~S~V~A 150 (379)
|||+.+|-|++ +-.+++..+...+. ..+.+.|+|+-|.+.+.+... .+... -+.+....+.+ ...+.-.|
T Consensus 1 P~vSiiip~yN~~~~l~~~l~Si~~Q-t~~~~eiivvdd~S~d~t~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~a 79 (255)
T d1qg8a_ 1 PKVSVIMTSYNKSDYVAKSISSILSQ-TFSDFELFIMDDNSNEETLNVIRPFLNDNRVRFYQSDISGVKERTEKTRYAAL 79 (255)
T ss_dssp CCEEEEEEESSCTTTHHHHHHHHHTC-SCCCEEEEEEECSCCHHHHHHHGGGGGSTTEEEEECCCCSHHHHHSSCHHHHH
T ss_pred CEEEEEEecCCCHHHHHHHHHHHHhC-CCCCeEEEEEECCCCccHHHHHHHhhhhcccccccccccccccccccchhccc
Confidence 79999999986 55788888888775 456799999998665321000 00000 01111111111 12333333
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCCCcccCC-cHHHHHHHhcC-CceeE
Q 016967 151 ARRLLAHALLRDPGNYMFALLSPSCIPIHP-FDFTYRTLVNS-EKSFI 196 (379)
Q Consensus 151 elrLL~~ALl~d~~n~~FvLLSgsciPL~s-~~~Iy~fL~~~-~~sFI 196 (379)
--..++.| +.+|++++-+.|++..+ .+.+.+++..+ +..++
T Consensus 80 ~N~gi~~a-----~g~~i~~lD~Dd~~~p~~l~~~~~~~~~~~~~~~v 122 (255)
T d1qg8a_ 80 INQAIEMA-----EGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVI 122 (255)
T ss_dssp HHHHHHHC-----CCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEE
T ss_pred cccccccc-----ccccccccccccccccchHHHHHHHHHhCCCCCeE
Confidence 33333332 45899999999998654 22333455433 44554
No 2
>d2qalc1 d.52.3.1 (C:1-105) Ribosomal protein S3 N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=15.11 E-value=31 Score=25.77 Aligned_cols=30 Identities=20% Similarity=0.236 Sum_probs=24.7
Q ss_pred cceeeEecHHHHHHHHhhhhhhHHhhcccc
Q 016967 229 GSQFWVLTRKHARLVVSDRRIWDKFDKPCE 258 (379)
Q Consensus 229 GSQWfsLtR~~A~~Iv~d~~~~~~F~~~c~ 258 (379)
.|.||+=.++-+++|.+|..+.....+++.
T Consensus 18 ~S~Wfa~~~~Y~~~l~eD~~IR~~i~k~~~ 47 (105)
T d2qalc1 18 NSTWFANTKEFADNLDSDFKVRQYLTKELA 47 (105)
T ss_dssp SCCCCCCHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCEEcCCccchHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999887666665554
No 3
>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.97 E-value=12 Score=25.62 Aligned_cols=19 Identities=42% Similarity=0.427 Sum_probs=15.1
Q ss_pred CcEEEecCCcChHHHHHHH
Q 016967 343 PFLFARKFSRGSIQRLLSI 361 (379)
Q Consensus 343 ~~LFARKF~~~~~~~Ll~~ 361 (379)
-||-||||+.+....+++.
T Consensus 30 rFLRarkf~~~ka~~~l~~ 48 (66)
T d1r5la1 30 RFLRARDFDLDLAWRLLKN 48 (66)
T ss_dssp HHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHccCCHHHHHHHHHH
Confidence 4789999999987766654
No 4
>d2uubc1 d.52.3.1 (C:2-106) Ribosomal protein S3 N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=9.92 E-value=36 Score=25.31 Aligned_cols=30 Identities=20% Similarity=0.343 Sum_probs=25.0
Q ss_pred cceeeEecHHHHHHHHhhhhhhHHhhcccc
Q 016967 229 GSQFWVLTRKHARLVVSDRRIWDKFDKPCE 258 (379)
Q Consensus 229 GSQWfsLtR~~A~~Iv~d~~~~~~F~~~c~ 258 (379)
.|.||+=.++-+++|.+|..+.....+.+.
T Consensus 18 ~S~W~a~~~~y~~~l~eD~~IR~~i~k~~~ 47 (105)
T d2uubc1 18 ESRWYAGKKQYRHLLLEDQRIRGLLEKELY 47 (105)
T ss_dssp SCBCCCCTTTTTHHHHHHHHHHHHHHHSTT
T ss_pred CceEcCChhhhHHHHHHHHHHHHHHHhhcc
Confidence 699999899999999999887766666654
No 5
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.60 E-value=20 Score=24.79 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=13.8
Q ss_pred CcEEEecCCcChHHHHHH
Q 016967 343 PFLFARKFSRGSIQRLLS 360 (379)
Q Consensus 343 ~~LFARKF~~~~~~~Ll~ 360 (379)
-||-||||+.+.....+.
T Consensus 40 RFLrAr~fdv~kA~~ml~ 57 (75)
T d1olma1 40 RWLRARSFDLQKSEAMLR 57 (75)
T ss_dssp HHHHHTTTCHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHH
Confidence 378899999887766553
No 6
>d1c9fa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.56 E-value=29 Score=25.30 Aligned_cols=16 Identities=25% Similarity=0.447 Sum_probs=11.7
Q ss_pred CCCcCCCcchHHHHhhc
Q 016967 262 RGSCYPEENYFPTLLHM 278 (379)
Q Consensus 262 ~~~c~pDE~yfqTlL~~ 278 (379)
..+.+ ||.|||||=.|
T Consensus 54 DGT~V-dEeYF~tLp~n 69 (87)
T d1c9fa_ 54 DGTEV-TDDCFPGLPND 69 (87)
T ss_dssp TTCCB-CTTSCSSCCTT
T ss_pred CCcEe-cHHHHhcCCCC
Confidence 35666 89999998544
No 7
>d1ibxa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.81 E-value=34 Score=24.59 Aligned_cols=16 Identities=31% Similarity=0.669 Sum_probs=11.6
Q ss_pred CCCcCCCcchHHHHhhc
Q 016967 262 RGSCYPEENYFPTLLHM 278 (379)
Q Consensus 262 ~~~c~pDE~yfqTlL~~ 278 (379)
..+.+ ||.||||+=.|
T Consensus 51 DGT~V-~EeYF~tLp~n 66 (81)
T d1ibxa_ 51 DGTEL-TEDYFPSVPDN 66 (81)
T ss_dssp SCSCC-CSSSCSSCCSC
T ss_pred CCcEe-eHHHHhcCCCC
Confidence 35666 88899998544
No 8
>d1d1qa_ c.44.1.1 (A:) Tyrosine phosphatase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.14 E-value=1.7e+02 Score=21.96 Aligned_cols=27 Identities=15% Similarity=0.309 Sum_probs=22.3
Q ss_pred CCCcEEEEEeeCCCCCcHHHHHHHHhc
Q 016967 78 GTKKVAFLFLTTTPLPLAPLWQLYFNR 104 (379)
Q Consensus 78 ~~~KiAfLfLa~~~l~l~~Lwe~ff~~ 104 (379)
.+||+-.||+++|+.=-.++.|.+|+.
T Consensus 2 ~~~k~~ILFVCtgN~cRSpmAEai~~~ 28 (159)
T d1d1qa_ 2 EKPKISVAFIALGNFCRSPMAEAIFKH 28 (159)
T ss_dssp CSCCEEEEEEESSSSSHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCChHhHHHHHHHHHHH
Confidence 368999999999998777777787764
No 9
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.36 E-value=2.4e+02 Score=15.68 Aligned_cols=13 Identities=23% Similarity=0.396 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHhH
Q 016967 7 LSLFCALLLCLPF 19 (379)
Q Consensus 7 ~~~~~~~~~~~~~ 19 (379)
+++.+|-++.|-.
T Consensus 6 yv~ifac~i~lff 18 (30)
T d2axtt1 6 YVFIFACIIALFF 18 (30)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 4555665555543
No 10
>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.28 E-value=31 Score=25.09 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=13.8
Q ss_pred CcEEEecCCcChHHHHHH
Q 016967 343 PFLFARKFSRGSIQRLLS 360 (379)
Q Consensus 343 ~~LFARKF~~~~~~~Ll~ 360 (379)
-||-||||+.+.....+.
T Consensus 57 RfLrAr~fd~~~a~~ml~ 74 (93)
T d1auaa1 57 RFLRARKFDVQLAKEMFE 74 (93)
T ss_dssp HHHHHTTTCHHHHHHHHH
T ss_pred HHHHHccCCHHHHHHHHH
Confidence 478999999887765553
Done!