BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016968
(379 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 115/278 (41%), Gaps = 15/278 (5%)
Query: 43 PLDVIKTRLQVHGLPEGTHXXXXXXXXXXXLQNIL---KNEGLKGLYRGLSPTLLALLPN 99
PLD K RLQ+ G +G L IL + EG + LY GL L +
Sbjct: 21 PLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSF 80
Query: 100 WAVYFAVYERLKGLLRTHGDGNSQLSVGKNMXXXXXXXXXXXXXXNPLWVVKTRLQTQGM 159
+V +Y+ +K + + G+ +G + P VVK R Q Q
Sbjct: 81 ASVRIGLYDSVK---QFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQAR 137
Query: 160 RSNVVPYKSILSALRRISHEEGMRGLYSGILPSLAGVSHV-AIQFPAYERIKHYMAKKDD 218
Y+S + A + I+ EEG+RGL+ G P++A + V + Y+ IK + K +
Sbjct: 138 AGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANL 197
Query: 219 TDVDKLNPGSIMIASSIAKVLASVITYPHEVVRSRLQEQGQNRKVDVQYAGVVDCVKKVF 278
D P A A +VI P +VV++R QY C +
Sbjct: 198 MTDDL--PCHFTSAFG-AGFCTTVIASPVDVVKTRYMNSALG-----QYHSAGHCALTML 249
Query: 279 QKEGFPGFYRGCATNLLRTTPSAVITFTSYEIIQSFLL 316
+KEG FY+G + LR V+ F +YE ++ L+
Sbjct: 250 RKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALM 287
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 84/182 (46%), Gaps = 18/182 (9%)
Query: 146 PLWVVKTRLQTQGMRSNVV------PYKSILSALRRISHEEGMRGLYSGILPSLA-GVSH 198
PL K RLQ QG +V Y+ +L + + EG R LY+G++ L +S
Sbjct: 21 PLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSF 80
Query: 199 VAIQFPAYERIKHYMAKKDDTDVDKLNPGSIMIASSIAKVLASVITYPHEVVRSRLQEQ- 257
+++ Y+ +K + K + GS ++A S LA + P +VV+ R Q Q
Sbjct: 81 ASVRIGLYDSVKQFYTKGSE----HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQA 136
Query: 258 --GQNRKVDVQYAGVVDCVKKVFQKEGFPGFYRGCATNLLRTTPSAVITFTSYEIIQSFL 315
G R+ Y V+ K + ++EG G ++G + N+ R +Y++I+ L
Sbjct: 137 RAGGGRR----YQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTL 192
Query: 316 LR 317
L+
Sbjct: 193 LK 194
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Query: 230 MIASSIAKVLASVITYPHEVVRSRLQEQGQNR-----KVDVQYAGVVDCVKKVFQKEGFP 284
+ + A +A +IT+P + + RLQ QG+++ QY GV+ + + + EG
Sbjct: 5 FLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPR 64
Query: 285 GFYRGCATNLLRTTPSAVITFTSYEIIQSF 314
Y G L R A + Y+ ++ F
Sbjct: 65 SLYNGLVAGLQRQMSFASVRIGLYDSVKQF 94
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 120/281 (42%), Gaps = 10/281 (3%)
Query: 39 TFMCPLDVIKTRLQVHGLPEGTHXXXXXXXXXXXLQNILKNEGLKGLYRGLSPTLLALLP 98
T + P++ +K LQV + + I K +G +RG ++ P
Sbjct: 23 TAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFP 82
Query: 99 NWAVYFAVYERLKGLLRTHGDGNSQL--SVGKNMXXXXXXXXXXXXXXNPLWVVKTRLQT 156
A+ FA ++ K + D + Q N+ PL +TRL
Sbjct: 83 TQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAA 142
Query: 157 Q-GMRSNVVPYKSILSALRRISHEEGMRGLYSGILPSLAGVS-HVAIQFPAYERIKHYMA 214
G + + + + + +I +G+RGLY G S+ G+ + A F Y+ K +
Sbjct: 143 DVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLP 202
Query: 215 KKDDTDVDKLNPGSIMIASSIAKVLASVITYPHEVVRSRLQEQGQNRKVDVQYAGVVDCV 274
+ + S MIA ++ V A +++YP + VR R+ Q + D+ Y G VDC
Sbjct: 203 DPKNVHIIV----SWMIAQTVTAV-AGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCW 257
Query: 275 KKVFQKEGFPGFYRGCATNLLRTTPSAVITFTSYEIIQSFL 315
+K+ + EG F++G +N+LR A + Y+ I+ F+
Sbjct: 258 RKIAKDEGPKAFFKGAWSNVLRGMGGAFV-LVLYDEIKKFV 297
>pdb|2F3O|A Chain A, Crystal Structure Of A Glycyl Radical Enzyme From
Archaeoglobus Fulgidus
pdb|2F3O|B Chain B, Crystal Structure Of A Glycyl Radical Enzyme From
Archaeoglobus Fulgidus
Length = 776
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 159 MRSNVVPY--KSILSALRRISHEEGMRGLYSG---ILPSLAGVSHVAIQFP 204
+R + PY + + A + M+ LY+G +L +AG+SHVA+ +P
Sbjct: 111 LREEIAPYWQRKTIEAFAFPLMPDIMQILYTGSVFVLTEIAGISHVAVNYP 161
>pdb|1UUR|A Chain A, Structure Of An Activated Dictyostelium Stat In Its
Dna-Unbound Form
pdb|1UUS|A Chain A, Structure Of An Activated Dictyostelium Stat In Its
Dna-Unbound Form
Length = 473
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 191 PSLAGVSHVAIQFPAYERIKHYMAKKDDTDVDK 223
P G++++ ++ PA RIKHY+ + +DT K
Sbjct: 384 PGQFGIAYIGVEMPA--RIKHYLVQPNDTAAAK 414
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,995,403
Number of Sequences: 62578
Number of extensions: 374967
Number of successful extensions: 691
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 674
Number of HSP's gapped (non-prelim): 6
length of query: 379
length of database: 14,973,337
effective HSP length: 100
effective length of query: 279
effective length of database: 8,715,537
effective search space: 2431634823
effective search space used: 2431634823
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)