Query 016968
Match_columns 379
No_of_seqs 357 out of 2045
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 06:46:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016968.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016968hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 9.1E-57 3.1E-61 414.3 28.0 289 21-315 5-297 (297)
2 2lck_A Mitochondrial uncouplin 100.0 2.3E-56 7.9E-61 412.6 22.4 280 26-316 4-287 (303)
3 1okc_A ADP, ATP carrier protei 100.0 3.2E-36 1.1E-40 277.2 15.8 194 123-316 4-202 (297)
4 2lck_A Mitochondrial uncouplin 100.0 4.7E-35 1.6E-39 270.0 17.3 185 128-317 3-194 (303)
5 3vjj_A P9-1; 3.00A {Rice black 23.5 36 0.0012 29.4 2.0 48 238-298 273-320 (368)
6 3tgu_G UQCRQ, mitochondrial ub 23.4 58 0.002 22.5 2.7 35 283-317 34-68 (81)
7 1y9i_A Low temperature require 18.9 2.1E+02 0.0072 22.9 5.5 46 98-143 111-159 (178)
8 2acm_A Mucin-1; auto-catalytic 17.1 23 0.0008 22.7 -0.4 19 269-287 41-59 (66)
9 3cx5_H Cytochrome B-C1 complex 13.9 1.7E+02 0.006 20.7 3.4 39 280-318 41-79 (93)
10 2a3d_A Protein (de novo three- 13.3 1.6E+02 0.0055 18.5 2.7 16 42-57 9-24 (73)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=9.1e-57 Score=414.34 Aligned_cols=289 Identities=25% Similarity=0.417 Sum_probs=240.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhcCCCCCCCCCCCchhHHHHHHHHHHhhCcccccccchHhhhhhhhhh
Q 016968 21 RVLLSHAAAGAAAGAIAATFMCPLDVIKTRLQVHGLPEGTHSGRRGSIIIISLQNILKNEGLKGLYRGLSPTLLALLPNW 100 (379)
Q Consensus 21 ~~~~~~~~aG~~ag~~~~~i~~Pld~vk~r~Q~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 100 (379)
.+.+.++++|++||+++.++++|||+||+|+|++...........+.++++++++|+++||++|||||+.+++++.++..
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence 34678999999999999999999999999999986432211122344589999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhcCCCCCCC--cchHHHHHHHHHHHHHHHHhhcHHHHHHHHHhccCCC-CCCcCCCcHHHHHHHHH
Q 016968 101 AVYFAVYERLKGLLRTHGDGNSQ--LSVGKNMIAAAGAGAATAITTNPLWVVKTRLQTQGMR-SNVVPYKSILSALRRIS 177 (379)
Q Consensus 101 ~~~f~~y~~~~~~l~~~~~~~~~--~~~~~~~~ag~~ag~~~~~~~~Pld~ik~r~q~~~~~-~~~~~~~~~~~~~~~i~ 177 (379)
+++|.+||.+++.+....+.... .+....+++|++||+++.++++|+|+||+|+|++... .....|.++++++++|+
T Consensus 85 ~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~ 164 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIF 164 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHH
Confidence 99999999999954332221111 2346789999999999999999999999999998532 22346899999999999
Q ss_pred Hhhchhhhcccchhhhhh-hhhHhhhHHHHHHHHHHHhccCCCCCCCCCchhHHHHHhHHHHHHhhccCcHHHHHHHHHh
Q 016968 178 HEEGMRGLYSGILPSLAG-VSHVAIQFPAYERIKHYMAKKDDTDVDKLNPGSIMIASSIAKVLASVITYPHEVVRSRLQE 256 (379)
Q Consensus 178 ~~~G~~glyrG~~~~l~~-~~~~~~~~~~ye~~k~~~~~~~~~~~~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~ 256 (379)
++||+++||||+.+++++ ++..+++|.+||.+|+.+.+.. .......+++|++||++++++++|+||||+|||+
T Consensus 165 ~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~-----~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~ 239 (297)
T 1okc_A 165 KSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK-----NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMM 239 (297)
T ss_dssp HHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG-----CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCC-----CccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhh
Confidence 999999999999999995 6799999999999999764322 2345667899999999999999999999999999
Q ss_pred ccCCCCCccccCCHHHHHHHHHHhcCcccccccchhhHhhHhhhhhhhHHHHHHHHHHH
Q 016968 257 QGQNRKVDVQYAGVVDCVKKVFQKEGFPGFYRGCATNLLRTTPSAVITFTSYEIIQSFL 315 (379)
Q Consensus 257 ~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~~~~~i~~~~ye~~~~~l 315 (379)
+.........|+++++|+++|+++||++|||||+.|+++|. +.++++|.+||.+|+++
T Consensus 240 ~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 240 QSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp TTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 86433334579999999999999999999999999999996 57899999999998754
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=2.3e-56 Score=412.59 Aligned_cols=280 Identities=26% Similarity=0.416 Sum_probs=245.3
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHhcCCCCCC---CCCCCchhHHHHHHHHHHhhCcccccccchHhhhhhhhhhHH
Q 016968 26 HAAAGAAAGAIAATFMCPLDVIKTRLQVHGLPEGT---HSGRRGSIIIISLQNILKNEGLKGLYRGLSPTLLALLPNWAV 102 (379)
Q Consensus 26 ~~~aG~~ag~~~~~i~~Pld~vk~r~Q~~~~~~~~---~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~ 102 (379)
++++|++||+++.+++||||+||+|+|++...... .....+.++++++++|+++||+++||||+.+++++.++..++
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 83 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASV 83 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHH
Confidence 68899999999999999999999999998653210 011234458999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHHhhcHHHHHHHHHhccCCCCCCcCCCcHHHHHHHHHHhhch
Q 016968 103 YFAVYERLKGLLRTHGDGNSQLSVGKNMIAAAGAGAATAITTNPLWVVKTRLQTQGMRSNVVPYKSILSALRRISHEEGM 182 (379)
Q Consensus 103 ~f~~y~~~~~~l~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~ik~r~q~~~~~~~~~~~~~~~~~~~~i~~~~G~ 182 (379)
+|.+||.+++.+....+ ..+....+++|++||+++.++++|+|+||+|+|++........|.++++++++|+++||+
T Consensus 84 ~f~~ye~~k~~~~~~~~---~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~ 160 (303)
T 2lck_A 84 RIGLYDSVKQFYTKGSE---HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGI 160 (303)
T ss_dssp TTTHHHHHHHHHSCCCS---SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHhcCCc---CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcCh
Confidence 99999999998865421 356778999999999999999999999999999986543445699999999999999999
Q ss_pred hhhcccchhhhhh-hhhHhhhHHHHHHHHHHHhccCCCCCCCCCchhHHHHHhHHHHHHhhccCcHHHHHHHHHhccCCC
Q 016968 183 RGLYSGILPSLAG-VSHVAIQFPAYERIKHYMAKKDDTDVDKLNPGSIMIASSIAKVLASVITYPHEVVRSRLQEQGQNR 261 (379)
Q Consensus 183 ~glyrG~~~~l~~-~~~~~~~~~~ye~~k~~~~~~~~~~~~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~ 261 (379)
++||||+.+++++ ++..+++|.+||.+|+.+.+... ........+++|++||++++++++|+||||+|||++..
T Consensus 161 ~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~---~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~-- 235 (303)
T 2lck_A 161 RGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANL---MTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL-- 235 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTS---CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS--
T ss_pred hhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccC---CCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc--
Confidence 9999999999995 67999999999999998765432 12345667999999999999999999999999999763
Q ss_pred CCccccCCHHHHHHHHHHhcCcccccccchhhHhhHhhhhhhhHHHHHHHHHHHH
Q 016968 262 KVDVQYAGVVDCVKKVFQKEGFPGFYRGCATNLLRTTPSAVITFTSYEIIQSFLL 316 (379)
Q Consensus 262 ~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~~~~~i~~~~ye~~~~~l~ 316 (379)
..|.++++|+++|+++||++|||||+.|+++|.+|.++++|.+||.+|+++.
T Consensus 236 ---~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~ 287 (303)
T 2lck_A 236 ---GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALM 287 (303)
T ss_dssp ---SSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred ---cccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999999999999999999999999999999997664
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=3.2e-36 Score=277.16 Aligned_cols=194 Identities=22% Similarity=0.345 Sum_probs=164.5
Q ss_pred CcchHHHHHHHHHHHHHHHHhhcHHHHHHHHHhccCCCC---CCcCCCcHHHHHHHHHHhhchhhhcccchhhhh-hhhh
Q 016968 123 QLSVGKNMIAAAGAGAATAITTNPLWVVKTRLQTQGMRS---NVVPYKSILSALRRISHEEGMRGLYSGILPSLA-GVSH 198 (379)
Q Consensus 123 ~~~~~~~~~ag~~ag~~~~~~~~Pld~ik~r~q~~~~~~---~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~l~-~~~~ 198 (379)
..+.+..+++|++||+++.++++|+|+||+|+|++.... ....|+++++++++|+++||+++||||+.++++ .++.
T Consensus 4 ~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~ 83 (297)
T 1okc_A 4 ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPT 83 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHH
Confidence 346678899999999999999999999999999975321 233589999999999999999999999999999 4678
Q ss_pred HhhhHHHHHHHHHHHhccCCCCCC-CCCchhHHHHHhHHHHHHhhccCcHHHHHHHHHhccCCCCCccccCCHHHHHHHH
Q 016968 199 VAIQFPAYERIKHYMAKKDDTDVD-KLNPGSIMIASSIAKVLASVITYPHEVVRSRLQEQGQNRKVDVQYAGVVDCVKKV 277 (379)
Q Consensus 199 ~~~~~~~ye~~k~~~~~~~~~~~~-~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i 277 (379)
.+++|.+||.+|+.+....+.... .......+++|++||++++++++|+|+||+|||++.........|.++++|+++|
T Consensus 84 ~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i 163 (297)
T 1okc_A 84 QALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKI 163 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHH
Confidence 999999999999965432221111 0123456899999999999999999999999999864333346799999999999
Q ss_pred HHhcCcccccccchhhHhhHhhhhhhhHHHHHHHHHHHH
Q 016968 278 FQKEGFPGFYRGCATNLLRTTPSAVITFTSYEIIQSFLL 316 (379)
Q Consensus 278 ~~~eG~~glyrG~~~~~~r~~~~~~i~~~~ye~~~~~l~ 316 (379)
+++||++|||||+.++++|.+|.++++|.+||.+|+++.
T Consensus 164 ~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~ 202 (297)
T 1okc_A 164 FKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLP 202 (297)
T ss_dssp HHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999998653
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=4.7e-35 Score=269.98 Aligned_cols=185 Identities=26% Similarity=0.494 Sum_probs=163.7
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHhccCCCCC------CcCCCcHHHHHHHHHHhhchhhhcccchhhhh-hhhhHh
Q 016968 128 KNMIAAAGAGAATAITTNPLWVVKTRLQTQGMRSN------VVPYKSILSALRRISHEEGMRGLYSGILPSLA-GVSHVA 200 (379)
Q Consensus 128 ~~~~ag~~ag~~~~~~~~Pld~ik~r~q~~~~~~~------~~~~~~~~~~~~~i~~~~G~~glyrG~~~~l~-~~~~~~ 200 (379)
..+++|++||+++.++++|+|+||+|+|++..... ..+|+++++++++|+++||+++||||+.++++ .++..+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 36899999999999999999999999999864321 34689999999999999999999999999999 467899
Q ss_pred hhHHHHHHHHHHHhccCCCCCCCCCchhHHHHHhHHHHHHhhccCcHHHHHHHHHhccCCCCCccccCCHHHHHHHHHHh
Q 016968 201 IQFPAYERIKHYMAKKDDTDVDKLNPGSIMIASSIAKVLASVITYPHEVVRSRLQEQGQNRKVDVQYAGVVDCVKKVFQK 280 (379)
Q Consensus 201 ~~~~~ye~~k~~~~~~~~~~~~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~ 280 (379)
++|.+||.+|+.+.+..+ .......+++|++||++++++++|+|+||+|+|++... .....|.++++|+++|+++
T Consensus 83 i~f~~ye~~k~~~~~~~~----~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~-~~~~~~~~~~~~~~~i~~~ 157 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGSE----HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA-GGGRRYQSTVEAYKTIARE 157 (303)
T ss_dssp HTTTHHHHHHHHHSCCCS----SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC-CCSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCc----CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc-CCCCCCCCHHHHHHHHHHh
Confidence 999999999998865421 24567789999999999999999999999999998642 2345789999999999999
Q ss_pred cCcccccccchhhHhhHhhhhhhhHHHHHHHHHHHHh
Q 016968 281 EGFPGFYRGCATNLLRTTPSAVITFTSYEIIQSFLLR 317 (379)
Q Consensus 281 eG~~glyrG~~~~~~r~~~~~~i~~~~ye~~~~~l~~ 317 (379)
||++|||||+.++++|.+|.++++|.+||.+|+.+.+
T Consensus 158 eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~ 194 (303)
T 2lck_A 158 EGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLK 194 (303)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred cChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999998754
No 5
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=23.48 E-value=36 Score=29.37 Aligned_cols=48 Identities=25% Similarity=0.416 Sum_probs=28.4
Q ss_pred HHHhhccCcHHHHHHHHHhccCCCCCccccCCHHHHHHHHHHhcCcccccccchhhHhhHh
Q 016968 238 VLASVITYPHEVVRSRLQEQGQNRKVDVQYAGVVDCVKKVFQKEGFPGFYRGCATNLLRTT 298 (379)
Q Consensus 238 ~~a~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~ 298 (379)
.++++-.||||.+|-.++..- ++...+.+.+.++| ||+-+..+-+|-.
T Consensus 273 qLaTFdnypfdllRfqL~Sli----------stp~~I~e~i~K~G---LFk~it~~~~rg~ 320 (368)
T 3vjj_A 273 QLATFDNYPFDLLRFQLSSLI----------STPALIREKIAKEG---LFKIITSNTLRGA 320 (368)
T ss_dssp HHHHCTTCBHHHHHHHCSSCC----------CCCHHHHHHHHHSC---SEEECC-------
T ss_pred eeecCCCCCHHHHHHHhhhhc----------cChHHHHHHHHhcC---ceEEEecccccCC
Confidence 456778999999876655432 44567888888885 4555544444443
No 6
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=23.36 E-value=58 Score=22.50 Aligned_cols=35 Identities=14% Similarity=0.332 Sum_probs=26.6
Q ss_pred cccccccchhhHhhHhhhhhhhHHHHHHHHHHHHh
Q 016968 283 FPGFYRGCATNLLRTTPSAVITFTSYEIIQSFLLR 317 (379)
Q Consensus 283 ~~glyrG~~~~~~r~~~~~~i~~~~ye~~~~~l~~ 317 (379)
+...||-+...++..+|..++.+.+|+..++.-..
T Consensus 34 i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~ 68 (81)
T 3tgu_G 34 LPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFER 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 33444555577888999999999999998886654
No 7
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=18.94 E-value=2.1e+02 Score=22.94 Aligned_cols=46 Identities=13% Similarity=0.142 Sum_probs=29.7
Q ss_pred hhhHHHHHHHHHHhhhhhcCCC---CCCCcchHHHHHHHHHHHHHHHHh
Q 016968 98 PNWAVYFAVYERLKGLLRTHGD---GNSQLSVGKNMIAAAGAGAATAIT 143 (379)
Q Consensus 98 ~~~~~~f~~y~~~~~~l~~~~~---~~~~~~~~~~~~ag~~ag~~~~~~ 143 (379)
....+.|..||.+|...-..-+ ...-..+...+++|.+|+++..++
T Consensus 111 ~~gf~~Fr~fDi~KPgpI~~ld~~~~gg~gimlDDivAgi~A~~~~~l~ 159 (178)
T 1y9i_A 111 SIGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASRLA 159 (178)
T ss_dssp GGGHHHHHHHHHHCCTHHHHTTCCCSSCCCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHhhhcccCCCCcchHHHHHHHHHHHHHHHHH
Confidence 4567788999999975432211 112345777888888888766443
No 8
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=17.12 E-value=23 Score=22.67 Aligned_cols=19 Identities=16% Similarity=0.560 Sum_probs=16.6
Q ss_pred CHHHHHHHHHHhcCccccc
Q 016968 269 GVVDCVKKVFQKEGFPGFY 287 (379)
Q Consensus 269 ~~~~~~~~i~~~eG~~gly 287 (379)
++.+.+.+||+++++.||+
T Consensus 41 ~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 41 DISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHccCCeeeee
Confidence 6778889999999999886
No 9
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=13.88 E-value=1.7e+02 Score=20.66 Aligned_cols=39 Identities=10% Similarity=0.026 Sum_probs=32.0
Q ss_pred hcCcccccccchhhHhhHhhhhhhhHHHHHHHHHHHHhh
Q 016968 280 KEGFPGFYRGCATNLLRTTPSAVITFTSYEIIQSFLLRV 318 (379)
Q Consensus 280 ~eG~~glyrG~~~~~~r~~~~~~i~~~~ye~~~~~l~~~ 318 (379)
..|+...+|-+.-.++..+|...+.+.+|+..++.-...
T Consensus 41 ~~~i~N~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~e~l 79 (93)
T 3cx5_H 41 HNAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYNEFL 79 (93)
T ss_dssp TTTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcchHHHHHHHhcceEEechHhHHHHHHHHHHHHHHHH
Confidence 356777888888889999999999999999888766543
No 10
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=13.30 E-value=1.6e+02 Score=18.48 Aligned_cols=16 Identities=50% Similarity=0.468 Sum_probs=11.9
Q ss_pred chHHHHHHHHHhcCCC
Q 016968 42 CPLDVIKTRLQVHGLP 57 (379)
Q Consensus 42 ~Pld~vk~r~Q~~~~~ 57 (379)
.-|..||+|+|.-+..
T Consensus 9 qrlaaiktrlqalggs 24 (73)
T 2a3d_A 9 QRLAAIKTRLQALGGS 24 (73)
T ss_dssp HHHHHHHHHHHHCSSG
T ss_pred HHHHHHHHHHHHhcCc
Confidence 4466799999987553
Done!