Query 016969
Match_columns 379
No_of_seqs 122 out of 1099
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 04:27:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016969.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016969hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1304 Amino acid transporter 100.0 5.4E-51 1.2E-55 389.2 21.8 320 12-373 114-449 (449)
2 KOG1303 Amino acid transporter 100.0 5.8E-49 1.2E-53 381.2 25.1 335 9-376 102-437 (437)
3 PTZ00206 amino acid transporte 100.0 2.9E-49 6.2E-54 392.7 22.0 343 9-374 118-465 (467)
4 PLN03074 auxin influx permease 100.0 4.8E-42 1E-46 339.9 22.0 319 13-379 121-457 (473)
5 PF01490 Aa_trans: Transmembra 100.0 4.1E-45 8.9E-50 359.0 -4.4 338 9-370 65-408 (409)
6 KOG1305 Amino acid transporter 100.0 6.2E-38 1.3E-42 302.8 20.9 342 7-376 62-408 (411)
7 KOG4303 Vesicular inhibitory a 100.0 2.5E-40 5.4E-45 299.2 -0.5 338 9-379 182-520 (524)
8 COG0814 SdaC Amino acid permea 99.9 1.4E-22 3.1E-27 198.2 21.7 338 7-370 66-412 (415)
9 TIGR00837 araaP aromatic amino 99.6 8.2E-14 1.8E-18 135.9 19.5 292 8-340 55-358 (381)
10 PF03222 Trp_Tyr_perm: Tryptop 99.4 3E-11 6.5E-16 117.8 21.8 291 7-340 60-364 (394)
11 PRK15132 tyrosine transporter 99.4 1.2E-10 2.5E-15 113.5 21.1 316 7-366 60-392 (403)
12 PRK10483 tryptophan permease; 99.2 1.7E-09 3.7E-14 105.1 22.1 292 7-340 68-372 (414)
13 PRK13629 threonine/serine tran 99.2 1.7E-09 3.7E-14 105.2 20.6 336 7-367 77-440 (443)
14 PRK09664 tryptophan permease T 99.2 7.1E-09 1.5E-13 100.7 21.7 296 7-341 66-374 (415)
15 TIGR00814 stp serine transport 99.1 2E-09 4.3E-14 105.0 16.2 320 10-358 64-395 (397)
16 PRK10655 potE putrescine trans 98.5 2.4E-05 5.3E-10 77.8 21.6 56 148-206 190-245 (438)
17 PRK11021 putative transporter; 98.4 0.0002 4.4E-09 70.6 24.7 63 146-211 176-240 (410)
18 PRK10746 putative transport pr 98.3 7.4E-05 1.6E-09 74.8 19.6 55 147-204 200-254 (461)
19 PRK10644 arginine:agmatin anti 98.3 0.00014 3E-09 72.5 21.1 56 148-206 192-247 (445)
20 PRK10249 phenylalanine transpo 98.3 0.00018 3.9E-09 72.0 21.6 55 148-205 210-264 (458)
21 TIGR00908 2A0305 ethanolamine 98.2 9E-05 2E-09 73.8 18.9 176 9-203 68-244 (442)
22 TIGR00909 2A0306 amino acid tr 98.2 9.3E-05 2E-09 73.4 18.9 184 8-206 63-251 (429)
23 PRK10435 cadB lysine/cadaverin 98.2 0.00024 5.1E-09 70.7 21.0 61 146-209 186-246 (435)
24 PRK10238 aromatic amino acid t 98.2 0.00023 5.1E-09 71.2 20.8 175 8-201 72-251 (456)
25 PF13520 AA_permease_2: Amino 98.2 0.00013 2.8E-09 72.2 18.5 184 8-211 58-247 (426)
26 TIGR00905 2A0302 transporter, 98.2 0.00051 1.1E-08 69.1 22.7 179 13-207 74-255 (473)
27 TIGR03810 arg_ornith_anti argi 98.1 0.00035 7.6E-09 70.1 20.7 59 148-210 196-254 (468)
28 TIGR00913 2A0310 amino acid pe 98.1 0.00093 2E-08 67.2 23.8 176 12-204 68-251 (478)
29 PRK15049 L-asparagine permease 98.1 0.00051 1.1E-08 69.5 21.2 58 148-208 221-278 (499)
30 PRK11049 D-alanine/D-serine/gl 98.1 0.00098 2.1E-08 67.0 22.5 56 148-206 212-267 (469)
31 PRK11357 frlA putative fructos 98.1 0.00025 5.5E-09 70.6 18.1 56 147-205 195-250 (445)
32 PRK10580 proY putative proline 98.0 0.00059 1.3E-08 68.3 20.2 54 148-204 200-253 (457)
33 TIGR01773 GABAperm gamma-amino 98.0 0.00062 1.3E-08 68.0 20.1 183 7-208 71-259 (452)
34 TIGR03813 put_Glu_GABA_T putat 98.0 0.00062 1.3E-08 68.5 19.9 53 155-210 202-254 (474)
35 COG1113 AnsP Gamma-aminobutyra 98.0 0.00033 7.2E-09 68.1 16.8 187 9-215 74-273 (462)
36 PRK10197 gamma-aminobutyrate t 98.0 0.0011 2.5E-08 66.1 21.4 54 148-204 182-235 (446)
37 TIGR00906 2A0303 cationic amin 98.0 0.00071 1.5E-08 69.4 20.3 179 19-205 100-286 (557)
38 PRK11387 S-methylmethionine tr 98.0 0.0011 2.3E-08 66.8 20.9 56 147-205 206-261 (471)
39 TIGR00907 2A0304 amino acid pe 97.9 0.0024 5.2E-08 64.3 22.6 51 147-200 217-267 (482)
40 TIGR00930 2a30 K-Cl cotranspor 97.9 0.0062 1.3E-07 66.1 25.3 179 17-204 148-334 (953)
41 KOG1287 Amino acid transporter 97.8 0.00099 2.1E-08 65.7 16.0 290 19-342 85-387 (479)
42 TIGR00911 2A0308 L-type amino 97.7 0.0031 6.7E-08 63.9 18.9 58 146-206 234-291 (501)
43 TIGR00910 2A0307_GadC glutamat 97.7 0.002 4.4E-08 65.3 17.2 51 150-203 197-247 (507)
44 PRK10836 lysine transporter; P 97.5 0.023 5E-07 57.4 21.4 54 149-205 207-260 (489)
45 TIGR00912 2A0309 spore germina 97.4 0.013 2.8E-07 56.6 18.5 176 11-213 63-241 (359)
46 COG0531 PotE Amino acid transp 97.4 0.022 4.7E-07 56.8 20.1 186 11-211 75-262 (466)
47 TIGR03428 ureacarb_perm permea 97.4 0.18 3.9E-06 50.7 26.6 54 148-204 214-267 (475)
48 PRK15238 inner membrane transp 97.0 0.1 2.2E-06 52.9 20.2 54 148-204 212-265 (496)
49 TIGR00800 ncs1 NCS1 nucleoside 96.9 0.032 6.9E-07 55.7 15.5 197 6-213 70-274 (442)
50 TIGR02358 thia_cytX probable h 96.7 0.12 2.6E-06 50.6 17.4 181 6-211 52-233 (386)
51 PRK11375 allantoin permease; P 96.6 0.26 5.7E-06 49.7 19.4 54 6-59 83-137 (484)
52 PF00324 AA_permease: Amino ac 96.5 0.0096 2.1E-07 59.9 8.6 64 146-212 199-262 (478)
53 KOG1289 Amino acid transporter 96.1 0.19 4.1E-06 50.3 14.5 73 145-220 250-322 (550)
54 PF03845 Spore_permease: Spore 96.0 0.066 1.4E-06 50.9 11.0 176 10-212 60-236 (320)
55 PRK09442 panF sodium/panthothe 95.9 2.3 4.9E-05 43.0 23.7 85 10-108 106-191 (483)
56 COG1457 CodB Purine-cytosine p 95.7 0.52 1.1E-05 46.5 15.8 171 16-213 85-258 (442)
57 COG3949 Uncharacterized membra 95.6 0.62 1.3E-05 43.9 15.0 81 6-102 60-142 (349)
58 TIGR02119 panF sodium/pantothe 95.6 2.8 6.2E-05 42.0 23.6 85 10-108 105-190 (471)
59 PRK11017 codB cytosine permeas 95.5 0.46 9.9E-06 46.8 14.6 51 6-56 65-115 (404)
60 KOG1286 Amino acid transporter 95.2 1.9 4.1E-05 44.2 18.1 178 17-204 101-286 (554)
61 COG0591 PutP Na+/proline sympo 94.3 6.7 0.00014 39.7 23.4 190 9-212 102-300 (493)
62 TIGR00813 sss transporter, SSS 94.3 4.5 9.8E-05 39.7 18.3 85 10-108 64-149 (407)
63 PF00474 SSF: Sodium:solute sy 94.2 0.42 9.1E-06 46.9 10.7 86 10-109 67-154 (406)
64 COG0833 LysP Amino acid transp 93.2 10 0.00023 38.3 19.1 174 10-200 107-284 (541)
65 PRK12488 acetate permease; Pro 91.1 20 0.00044 36.8 24.5 85 10-108 128-213 (549)
66 PRK15419 proline:sodium sympor 90.0 24 0.00051 35.8 19.3 85 10-108 106-193 (502)
67 TIGR02121 Na_Pro_sym sodium/pr 85.2 45 0.00097 33.7 20.7 85 10-108 102-189 (487)
68 TIGR02711 symport_actP cation/ 83.2 59 0.0013 33.4 21.9 84 10-107 128-212 (549)
69 PF02133 Transp_cyt_pur: Perme 78.2 0.87 1.9E-05 45.2 0.8 54 6-59 65-118 (440)
70 TIGR00796 livcs branched-chain 77.6 2.8 6.1E-05 40.8 4.0 78 11-102 254-331 (378)
71 PF05525 Branch_AA_trans: Bran 72.2 6.2 0.00013 39.0 4.9 66 14-92 263-328 (427)
72 COG1914 MntH Mn2+ and Fe2+ tra 71.5 1.1E+02 0.0024 30.3 20.5 46 12-57 77-122 (416)
73 COG1953 FUI1 Cytosine/uracil/t 66.2 1.5E+02 0.0033 29.9 18.3 206 6-222 97-318 (497)
74 KOG3832 Predicted amino acid t 64.4 7.2 0.00016 34.3 3.1 152 12-174 130-300 (319)
75 PRK10484 putative transporter; 63.7 1.8E+02 0.0038 29.7 21.1 93 10-108 99-194 (523)
76 COG1114 BrnQ Branched-chain am 60.1 13 0.00028 36.4 4.3 64 14-90 265-328 (431)
77 PRK09395 actP acetate permease 52.7 2.8E+02 0.006 28.5 23.8 84 10-107 130-214 (551)
78 PF02554 CstA: Carbon starvati 48.3 31 0.00067 33.3 4.8 49 5-53 107-155 (376)
79 PRK15433 branched-chain amino 41.3 33 0.00071 34.1 3.9 63 16-92 269-331 (439)
80 KOG4812 Golgi-associated prote 38.5 69 0.0015 28.9 5.0 68 296-368 161-243 (262)
81 TIGR00796 livcs branched-chain 36.1 4.2E+02 0.0091 25.8 15.4 53 150-208 187-243 (378)
82 KOG2082 K+/Cl- cotransporter K 34.1 3.5E+02 0.0076 29.1 9.9 46 170-218 433-487 (1075)
83 TIGR03648 Na_symport_lg probab 33.5 5.5E+02 0.012 26.3 25.7 89 5-107 86-177 (552)
84 PRK00701 manganese transport p 31.7 5.3E+02 0.012 25.7 22.0 45 12-56 94-138 (439)
85 PF05805 L6_membrane: L6 membr 31.6 1E+02 0.0023 26.9 5.0 62 314-375 46-117 (195)
86 PRK04949 putative sulfate tran 29.0 4.5E+02 0.0097 24.0 9.1 47 170-222 18-64 (251)
87 PF01566 Nramp: Natural resist 28.6 5.3E+02 0.011 24.6 18.2 79 11-103 41-121 (358)
88 PRK13183 psbN photosystem II r 27.6 73 0.0016 20.8 2.5 30 183-212 4-33 (46)
89 PF03134 TB2_DP1_HVA22: TB2/DP 26.8 2.4E+02 0.0053 21.1 5.9 37 316-352 2-40 (94)
90 PF02447 GntP_permease: GntP f 26.4 6.6E+02 0.014 25.1 11.4 83 295-377 236-322 (441)
91 TIGR02230 ATPase_gene1 F0F1-AT 25.5 2.3E+02 0.005 21.9 5.5 17 353-369 79-95 (100)
92 CHL00020 psbN photosystem II p 25.0 69 0.0015 20.6 2.0 27 186-212 4-30 (43)
93 TIGR01197 nramp NRAMP (natural 21.4 7.8E+02 0.017 24.1 19.6 43 12-54 64-106 (390)
94 PF02468 PsbN: Photosystem II 20.4 84 0.0018 20.2 1.8 26 187-212 5-30 (43)
No 1
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=5.4e-51 Score=389.18 Aligned_cols=320 Identities=21% Similarity=0.281 Sum_probs=269.3
Q ss_pred CCHHhHhh----------hhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHH
Q 016969 12 PDKFDASH----------GFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLI 81 (379)
Q Consensus 12 ~sY~dl~~----------~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i 81 (379)
.+|+|.++ +.+|+++|.++++++.+.|+|.|++|++++++|++++.+. +..+ .++.+.|+.+
T Consensus 114 ~~y~~~~~~a~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~---~~~~-----~~s~~~~i~~ 185 (449)
T KOG1304|consen 114 LDYAETAESAMEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDE---HSPG-----VLSVRLYILI 185 (449)
T ss_pred ccHHHHHHHHHcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhc---cCCC-----CccHHHHHHH
Confidence 55666665 4567888999999999999999999999999999999972 1111 4678889999
Q ss_pred HHHHHHHhccCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhhHHHHHHHHhhhHHhhcC
Q 016969 82 FGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYP 161 (379)
Q Consensus 82 ~~~i~~pls~~r~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~faf~ 161 (379)
..++++|++++||||.|+++|++|+++.++...++ +++..++.+ +.++.+...+..+.+.++|+.+|||+
T Consensus 186 ~~~~~lll~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii----~~y~~~~~~------~~~~~~~~~~~~~~~lf~GtaifafE 255 (449)
T KOG1304|consen 186 QLPPLLLLNLIRNLKILSPFSLFANVFILVGLAII----MYYLVQDLP------PTSDLPAVTGWSGLPLFFGTAIFAFE 255 (449)
T ss_pred HHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHH----HHHHHhccC------CccccccccchhhhHHHHHHHHHHhc
Confidence 99999999999999999999999999765433322 222222211 11122233334458889999999999
Q ss_pred CchhHHHHHhHhCCCCCchhhhh---hhhHHHHHHHHHHHhhhhhhhcccccCccccccccccCCCCChHHHHHHHHHHH
Q 016969 162 YSLILIEIQDTLKSPPPANQTMK---KASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIV 238 (379)
Q Consensus 162 ~~~~~~~i~~~M~~p~p~~~~~~---~~~~~s~~~~~~~Y~~~g~~GY~~fG~~v~~~il~n~~~~~~~~~~~~~~~~~~ 238 (379)
|++++.|++|+||+| ++|. ++++.+|.+++++|..+|++||++|||++++.|+.|+| + +++.+.++++++
T Consensus 256 Gig~VLPlEn~Mk~P----~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP--~-~~l~~~Vkl~~a 328 (449)
T KOG1304|consen 256 GIGMVLPLENSMKKP----QKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLP--Q-EILSQTVKLLLA 328 (449)
T ss_pred cceEEEehhhcccCh----hhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCC--c-cHHHHHHHHHHH
Confidence 999999999999998 8999 89999999999999999999999999999999999998 3 889999999999
Q ss_pred HHHHHhhcccccchHHHHHHHHHhhCCCCCCCCcccccCCCCCCcCCCchhHHHHHHHHHHHHHHHHHHccChHHHHHHH
Q 016969 239 IHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVI 318 (379)
Q Consensus 239 i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~l~~vl~lv 318 (379)
+.+.++||||++|..+.+|+.+.+|..+ .|.++....+|+.+++++.++|.++||++++++|+
T Consensus 329 i~I~ls~pLQ~yv~~eIi~~~i~~k~~~-----------------~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLV 391 (449)
T KOG1304|consen 329 IAIFLTYPLQFYVPIEIIEPGIRKKFSE-----------------NRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLV 391 (449)
T ss_pred HHHHHcCchhhhhhHHHHHHhHHHhcCc-----------------chhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHH
Confidence 9999999999999999999987654321 12457889999999999999999999999999999
Q ss_pred hhhhhhhhHhhhhhHHHHHhcCcc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016969 319 GGVIFWPLTIYFPVEMYFKQMNIE---AWTRKWVMLRVFSYVCFIVSTFGLVGSIQGI 373 (379)
Q Consensus 319 Gs~~~~~l~fi~P~l~y~~~~~~~---~~~~~~~~~~~i~~~g~~~~v~gt~~si~~l 373 (379)
||+|++.+++++|++++++.++++ ++.++++.|.+++++|+++++.|||+|++++
T Consensus 392 Gs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 392 GSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI 449 (449)
T ss_pred HHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 999999999999999999964332 3456667899999999999999999999874
No 2
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=5.8e-49 Score=381.21 Aligned_cols=335 Identities=36% Similarity=0.593 Sum_probs=292.1
Q ss_pred cCCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHH
Q 016969 9 FYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLI 88 (379)
Q Consensus 9 ~~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~p 88 (379)
|+..+|.|+|+++||+++++++.+++.+.++|.|+.|++..+|++..+.+..+.|+. .++.+.|+++++++++|
T Consensus 102 ~r~~~Y~dl~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~------~l~~~~f~iif~~i~~~ 175 (437)
T KOG1303|consen 102 KRRYRYPDLGQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN------SLDKQYFIIIFGLIVLP 175 (437)
T ss_pred ccCCChHHHHHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc------cccceehhhhHHHHHHH
Confidence 455789999999999999999999999999999999999999999999998765431 24467899999999999
Q ss_pred hccCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhhHHHHHHHHhhhHHhhcCCchhHHH
Q 016969 89 LSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIE 168 (379)
Q Consensus 89 ls~~r~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~~~~ 168 (379)
++++||++.+++.|..|.++++.|..+.+.+++.++.+.+..+. +.+....... .++++|++.|+|++|..+||
T Consensus 176 ~s~lp~~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~---~~~~~~~~~~---~f~a~g~iaFaf~gH~v~pe 249 (437)
T KOG1303|consen 176 LSQLPNFHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSG---GYLDLGTIPT---VFTALGIIAFAYGGHAVLPE 249 (437)
T ss_pred HHHCCCcchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCccc---CcccCCCCcc---hhhhhhheeeeecCCeeeee
Confidence 99999999999999999999988888888888777655422111 1111111111 18999999999999999999
Q ss_pred HHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhcccccCccccccccccCCCCChHHHHHHHHHHHHHHHHhhccc
Q 016969 169 IQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVY 248 (379)
Q Consensus 169 i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~v~~~il~n~~~~~~~~~~~~~~~~~~i~~~~sypl~ 248 (379)
||++||+| ++|+|++..++.+++.+|+.+++.||++|||+++++++.|++ +|.|+...+++++.+|++.+|+++
T Consensus 250 Iq~tMk~p----~~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~--~p~~~~~~ani~i~~h~i~s~~i~ 323 (437)
T KOG1303|consen 250 IQHTMKSP----PKFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQ--PPTWLIALANILIVLHLIGSYQIY 323 (437)
T ss_pred hHhhcCCc----hhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhccc--CchhHHHHHHHHHHHHHhhhhhhh
Confidence 99999987 669999999999999999999999999999999999999997 589999999999999999999999
Q ss_pred ccchHHHHHHHHHhhCCCCCCCCcccccCCCCCCcCCCchhHHHHHHHHHHHHHHHHHHccChHHHHHHHhhhhhhhhHh
Q 016969 249 SQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTI 328 (379)
Q Consensus 249 ~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~l~~vl~lvGs~~~~~l~f 328 (379)
.+|..+.+|+....++++ +. .+....|.+.|+.+++.++++|+.+|+|+++++++||+...++++
T Consensus 324 a~pl~~~~E~~~~~~~~~--~~-------------~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ 388 (437)
T KOG1303|consen 324 AQPLFDVVEKLIGVKHPD--FK-------------KRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTF 388 (437)
T ss_pred hcchHHHHHHHhccCCcc--cc-------------ccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHH
Confidence 999999999988654321 10 123478999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHhcCcchhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 016969 329 YFPVEMYFKQMNIEAWTRKWVMLRVF-SYVCFIVSTFGLVGSIQGIISA 376 (379)
Q Consensus 329 i~P~l~y~~~~~~~~~~~~~~~~~~i-~~~g~~~~v~gt~~si~~li~~ 376 (379)
++|+++|++++|+++++.+|.+++.+ .++|++.++....+++++++.+
T Consensus 389 ilP~~~yl~~~k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~ 437 (437)
T KOG1303|consen 389 ILPCLMYLLIKKPKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLIID 437 (437)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence 99999999999999999999998888 7999999999999999998764
No 3
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=2.9e-49 Score=392.74 Aligned_cols=343 Identities=15% Similarity=0.105 Sum_probs=257.4
Q ss_pred cCCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHH
Q 016969 9 FYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLI 88 (379)
Q Consensus 9 ~~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~p 88 (379)
++.++|+|+++++||+++++++++++.++++|+|++|+++++|+++.+++..-.++ ..+. ...++..+.+++.++++|
T Consensus 118 ~~~~sY~~la~~~~G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~-~~~~-~~~~r~~~~~i~~~i~lP 195 (467)
T PTZ00206 118 TNIRTYEGVARVLLGPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPD-FLKQ-KSGNRLLTSLMWLCFMLP 195 (467)
T ss_pred CCCCCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccc-hhhh-ccCcEEeeeehhhhHhhh
Confidence 57789999999999999999999999999999999999999999999885310000 0000 001222344556778899
Q ss_pred hccCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccc--cccccCchhhHHHHHHHHhhhHHhhcCCchhH
Q 016969 89 LSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSF--SGVSTTTSIEKMWLVAQALGDIAFAYPYSLIL 166 (379)
Q Consensus 89 ls~~r~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~~ 166 (379)
++++|++++|+++|.+|+++.+...+++++.+...+..++..+.+. .+.++........+.+.++|+++|||+||.+.
T Consensus 196 Ls~~r~i~~L~~~S~i~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~ 275 (467)
T PTZ00206 196 LVIPRHIDSLRYVSTIAVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITA 275 (467)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhh
Confidence 9999999999999999987543332222222222222111000000 00000011111235789999999999999999
Q ss_pred HHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhcccccCccccccccccCCCCChHHHHHHHHHHHHHHHHhhc
Q 016969 167 IEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQ 246 (379)
Q Consensus 167 ~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~v~~~il~n~~~~~~~~~~~~~~~~~~i~~~~syp 246 (379)
||+++|||+| +.+|+.++...++.++.++|..+|++||++|||+++++|+.|++. .++....++++++.+.++.+||
T Consensus 276 ~~i~~~M~~~--t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p-~~~~~~~v~~~~~~~~v~~syp 352 (467)
T PTZ00206 276 YEVYMDMTNR--SVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDP-VNEPAIMVGFVGVLVKLFVSYA 352 (467)
T ss_pred HHHHHhhccc--chhHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCC-CCCchhhHHHHHHHHHHHHhhh
Confidence 9999999986 558999999999999999999999999999999999999999941 2334556788889999999999
Q ss_pred ccccchHHHHHHHHHhhCCCCCCCCcccccCCCCCCcCCCchhHHHHHHHHHHHHHHHHHHccChHHHHHHHhhhhhhhh
Q 016969 247 VYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPL 326 (379)
Q Consensus 247 l~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~l~~vl~lvGs~~~~~l 326 (379)
++.+|+|+.+++.+.. +++ +.+ .++|...+..+++++.++|+++|+++.+++|+||++++.+
T Consensus 353 L~~~p~r~~i~~~~~~--~~~---------~~~-------~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l 414 (467)
T PTZ00206 353 LLGMACRNALYDVIGW--DAR---------KVA-------FWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLL 414 (467)
T ss_pred hhhhhHHHHHHHHhCC--Ccc---------cCc-------hhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHH
Confidence 9999999999887632 110 111 2556666766777889999999999999999999999999
Q ss_pred HhhhhhHHHHHhc--Cc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016969 327 TIYFPVEMYFKQM--NI-EAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGII 374 (379)
Q Consensus 327 ~fi~P~l~y~~~~--~~-~~~~~~~~~~~~i~~~g~~~~v~gt~~si~~li 374 (379)
+|++|+++|++.. +. +....+|..+++++++|++.++.|||+|+++.+
T Consensus 415 ~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 415 GFILPALLFMYSGGFTWQKVGPFYYISTYVVLITGVIAIVFGTGATIWGVT 465 (467)
T ss_pred HHHHHHHHHHhcCCccHHhhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence 9999999999842 22 222334567889999999999999999999876
No 4
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=4.8e-42 Score=339.88 Aligned_cols=319 Identities=18% Similarity=0.175 Sum_probs=253.5
Q ss_pred CHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHHhccC
Q 016969 13 DKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQA 92 (379)
Q Consensus 13 sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~ 92 (379)
+|.|+++..+||+++.+..+...+++++.|+.|++..++++..+.. .++++.|+++++++++|++++
T Consensus 121 ~~~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~-------------~~~~~~~~~i~~~v~~~~~~i 187 (473)
T PLN03074 121 QWFEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYIND-------------NLDKRTWTYIFGACCATTVFI 187 (473)
T ss_pred HHHHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCC-------------CcCCCeEEeehHHHHHHHHHc
Confidence 7899999999999999999999999999999999988887665421 245678999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhhHHHHHHHHhhhHHhhcCCchhHHHHHhH
Q 016969 93 PDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDT 172 (379)
Q Consensus 93 r~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~~~~i~~~ 172 (379)
|++++++++|.+|..+++.+...++..++..+.. ++.+. +...+...++.+.++++|+|+||..+||+++|
T Consensus 188 ~sl~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~--------~~~~~-~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~ 258 (473)
T PLN03074 188 PSFHNYRIWSFLGLLMTTYTAWYMTIAALSHGQV--------EGVKH-SGPTKLVLYFTGATNILYTFGGHAVTVEIMHA 258 (473)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--------CCCCC-CCchhHHHHHHHHHHHHHHhcccccHHHHHHh
Confidence 9999999999999876543322222222222111 11110 11234456778889999999999999999999
Q ss_pred hCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhcccccCccc--cccccccCCCCChHHHHHHHHHHHHHHHHhhccccc
Q 016969 173 LKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTP--GNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQ 250 (379)
Q Consensus 173 M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~v~--~~il~n~~~~~~~~~~~~~~~~~~i~~~~sypl~~~ 250 (379)
|||| ++|+++...++..+...|+.+|+.||++|||+++ ++.+.|+| .+. ..+++++++.++++.+||++.+
T Consensus 259 M~~P----~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp--~~~-~~~~~~~~~~i~~~~sy~l~~~ 331 (473)
T PLN03074 259 MWKP----QKFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLP--RSG-WRDAAVILMLIHQFITFGFACT 331 (473)
T ss_pred ccCh----hcccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCC--Cch-HHHHHHHHHHHHHHHHHHHHHh
Confidence 9987 7899988899999999999999999999999976 45677787 233 3578899999999999999999
Q ss_pred chHHHHHHHHHhhCCCCCCCCcccccCCCCCCcCCCchhHHHHHHHHHHHHHHHHHHccChHHHHHHHhhhhhhhhHhhh
Q 016969 251 PIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYF 330 (379)
Q Consensus 251 p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~l~~vl~lvGs~~~~~l~fi~ 330 (379)
|..+..|+....+ + .|....|.++|+.+++.++++|..+|+|+++++|+||+++++++|++
T Consensus 332 p~~~~~e~~~~~~--~-----------------~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~ 392 (473)
T PLN03074 332 PLYFVWEKAIGVH--D-----------------TKSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYII 392 (473)
T ss_pred hHHHHHHHHhccc--c-----------------cccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH
Confidence 9999988865321 0 12246789999999999999999999999999999999999999999
Q ss_pred hhHHHHHhcCc-----------c--hhhHH--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcC
Q 016969 331 PVEMYFKQMNI-----------E--AWTRK--WVMLRVFSYV-CFIVSTFGLVGSIQGIISAKLS 379 (379)
Q Consensus 331 P~l~y~~~~~~-----------~--~~~~~--~~~~~~i~~~-g~~~~v~gt~~si~~li~~~~~ 379 (379)
|+++|++.+++ + .++++ .+.|++++++ |+++.+.|+|+|++++++++++
T Consensus 393 P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~~ 457 (473)
T PLN03074 393 PSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQIDT 457 (473)
T ss_pred HHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhhh
Confidence 99999984322 1 11222 2678888765 5666799999999999999863
No 5
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=4.1e-45 Score=359.01 Aligned_cols=338 Identities=22% Similarity=0.277 Sum_probs=265.7
Q ss_pred cCCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHH
Q 016969 9 FYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLI 88 (379)
Q Consensus 9 ~~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~p 88 (379)
++..+|+|++++++|+++++++++++.++++|.|++|+++.+|+++++.+....+ ...++..|.++..++++|
T Consensus 65 ~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~-------~~~~~~~~~~i~~~i~~p 137 (409)
T PF01490_consen 65 TGRRSYGDLARRAFGPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD-------LFISRYVWIIIFALIVLP 137 (409)
T ss_pred cccccccccccccccccccccccchheeccccccceeEEEeeeeeeccccccccc-------cccccccccccccccccc
Confidence 5899999999999999999999999999999999999999999999998753221 134566777788889999
Q ss_pred hccCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhhHHHHHHHHhhhHHhhcCCchhHHH
Q 016969 89 LSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIE 168 (379)
Q Consensus 89 ls~~r~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~~~~ 168 (379)
++++||++++++.|.+|.++.+.+..+.+. ........++.+. +.++.....+.++.+.++|+++|||.||.++|+
T Consensus 138 ls~~~~l~~l~~~s~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~ 213 (409)
T PF01490_consen 138 LSFLKNLKSLRYLSILGLFSIFYFIVIVVI-YIISYGPGEPSGV---PSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPP 213 (409)
T ss_pred ccccchhhHHHHHhhhhhhccceeeeeecc-eeeeeeccccccc---ccccccccchhhHHHHhhhhhhhhhhcccccce
Confidence 999999999999999998864332111111 1111111111111 111111234456799999999999999999999
Q ss_pred HHhHhCCCCCch-hhhhhhhHHHHHHHHHHHhhhhhhhcccccCccccccccccCCCCChHHHHHHHHHHHHHHHHhhcc
Q 016969 169 IQDTLKSPPPAN-QTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQV 247 (379)
Q Consensus 169 i~~~M~~p~p~~-~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~v~~~il~n~~~~~~~~~~~~~~~~~~i~~~~sypl 247 (379)
+++|||+| ++ +|++++...++.+++++|..+|+.||++||+++++|++.|+| +++++..++++++.++++.+||+
T Consensus 214 i~~~m~~~--~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~--~~~~~~~i~~~~~~i~~~~s~pl 289 (409)
T PF01490_consen 214 IQSEMKDP--SKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLP--NDDVLIIIARILLVISLLLSYPL 289 (409)
T ss_pred eeeeccCC--ccccccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCC--Ccccccccccccchhhhhhcccc
Confidence 99999986 33 456699999999999999999999999999999999999998 34467788999999999999999
Q ss_pred cccchHHHHHHHHHhhCCCCCCCCcccccCCCCCCcCCCchhHHHHHHHHHHHHHHHHHHccChHHHHHHHhhhhhhhhH
Q 016969 248 YSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLT 327 (379)
Q Consensus 248 ~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~l~~vl~lvGs~~~~~l~ 327 (379)
+.+|.++.+|+.+.++....+.. .+. + .+.++.|..+|+.+++.++++|+.+|+++++++++||++++.++
T Consensus 290 ~~~p~~~~l~~~~~~~~~~~~~~---~~~--~----~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~ 360 (409)
T PF01490_consen 290 QLFPARNSLENLLFKRAASSRDS---PKN--T----PSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFIS 360 (409)
T ss_pred ccchhHhhhhhheeccccccccc---ccc--c----cccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHH
Confidence 99999999999875420000000 000 1 13457789999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHhcCcchhhHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 016969 328 IYFPVEMYFKQMNIEAWTRKW-----VMLRVFSYVCFIVSTFGLVGSI 370 (379)
Q Consensus 328 fi~P~l~y~~~~~~~~~~~~~-----~~~~~i~~~g~~~~v~gt~~si 370 (379)
|++|+++|+|.+|.++.+.+| ..++.++++|++.++.|+|+++
T Consensus 361 fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 361 FILPALLYLKLFKRKRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSI 408 (409)
T ss_pred HHHHHHHHHHhhcccccccceeehhhccceEEEEEeeehhHHhHHHHc
Confidence 999999999976554322222 2356678899999999999886
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=6.2e-38 Score=302.82 Aligned_cols=342 Identities=15% Similarity=0.179 Sum_probs=262.0
Q ss_pred cccCCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCch-hhHHHHHH
Q 016969 7 FYFYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTY-YMLIFGAV 85 (379)
Q Consensus 7 ~~~~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~-~~~i~~~i 85 (379)
...+.++|++++++++|+.++....+.+.....| |++|+++++|.++.........++.. .. ..+++. |++....+
T Consensus 62 ~~~~~~ty~~l~~~~~g~~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~-~~-~~~~~~~ill~~~~~ 138 (411)
T KOG1305|consen 62 KKSGERTYSSLGDLIFGKLGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGG-SH-YLDRNFLILLVLLFI 138 (411)
T ss_pred hhcCCCCHHHHHHHHcCCCceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccc-cc-cccceeEeehHHHHH
Confidence 3456669999999999999988888888888888 89999999999997765422111110 00 123333 45666788
Q ss_pred HHHhccCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhhHHHHHHHHhhhHHhhcCCchh
Q 016969 86 QLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLI 165 (379)
Q Consensus 86 ~~pls~~r~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~ 165 (379)
+.|+++.|++++|+++|.++.++.+.+.++++...+......+.. ... .++....++.+.++|+++|||.||.|
T Consensus 139 i~pLsl~k~l~~Lk~tS~~s~~~~~~fv~~vv~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~pi~~faf~Ch~n 212 (411)
T KOG1305|consen 139 ILPLSLLKNLDSLKYTSALSLASVVYFVVLVVYKYFQGPCALGRL---SYL---VPNLSSFSSLFYALPIFVFAFTCHSN 212 (411)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCc---ccc---cCCcchhhhhhhhhhhhheeeecccc
Confidence 899999999999999999998865444333322222211100100 011 11222226789999999999999999
Q ss_pred HHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhcccccCccccccccccCCCCChH----HHHHHHHHHHHHH
Q 016969 166 LIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYW----LIDLANAFIVIHL 241 (379)
Q Consensus 166 ~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~v~~~il~n~~~~~~~~----~~~~~~~~~~i~~ 241 (379)
+.++++|||+| +++|+.++...+...+.++|..+|++||++|||++.+|++.++|+..+.. ....++..+.++.
T Consensus 213 ~~~i~~El~~~--s~~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~ 290 (411)
T KOG1305|consen 213 VFPIYNELKDR--SVKKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAV 290 (411)
T ss_pred ceeeeeeeeCc--hHHHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHH
Confidence 99999999986 78999999999999999999999999999999999999999998533322 3568899999999
Q ss_pred HHhhcccccchHHHHHHHHHhhCCCCCCCCcccccCCCCCCcCCCchhHHHHHHHHHHHHHHHHHHccChHHHHHHHhhh
Q 016969 242 VGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGV 321 (379)
Q Consensus 242 ~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~l~~vl~lvGs~ 321 (379)
+.++|+..+|+|..+++.+.+..|+. + +..+.++.+++..++..+.+.|+++|+++++++++||+
T Consensus 291 ~l~~pi~~fPlr~~l~~~~~~~~~~~---------~------~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT 355 (411)
T KOG1305|consen 291 LLTFPIVLFPLRMNLDELLFPYQPGL---------T------SFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGAT 355 (411)
T ss_pred HHHHHHHhchHHHHHHHHhcccCCCC---------C------CccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhh
Confidence 99999999999999888776543321 0 11235667888889999999999999999999999999
Q ss_pred hhhhhHhhhhhHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016969 322 IFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISA 376 (379)
Q Consensus 322 ~~~~l~fi~P~l~y~~~~~~~~~~~~~~~~~~i~~~g~~~~v~gt~~si~~li~~ 376 (379)
+++.++|++|+++|++..|.+.+. ....+...++|+..++.|+..-+.++..+
T Consensus 356 ~~~~i~FI~P~~~yl~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~i~~~~~~ 408 (411)
T KOG1305|consen 356 SSTSISFILPALYYLKASKKKSRE--PLGALIFLILGVLLSIIGVAVMIYDLLAK 408 (411)
T ss_pred hhhhhHHHHHHHhhheeecccccc--chHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999965542222 23345567889999999999999888765
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-40 Score=299.18 Aligned_cols=338 Identities=17% Similarity=0.161 Sum_probs=272.5
Q ss_pred cCCCCHHhHhhhhcCcC-cchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHH
Q 016969 9 FYLPDKFDASHGFSGKT-NAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQL 87 (379)
Q Consensus 9 ~~~~sY~dl~~~~~G~~-~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~ 87 (379)
|-+.+|.++|..++++. |.+.+.+.+++.++++|+.|++..||.+..-++.. ..+++-|+++.+..++
T Consensus 182 rvRdsYvaIA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~-----------svd~~sWm~i~~a~LL 250 (524)
T KOG4303|consen 182 RVRDSYVAIADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGL-----------SVDKASWMMITSASLL 250 (524)
T ss_pred EeehhHHHHHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCC-----------CccccchhhhhhHHHh
Confidence 45689999999999986 56999999999999999999999999887766531 2456779999999999
Q ss_pred HhccCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhhHHHHHHHHhhhHHhhcCCchhHH
Q 016969 88 ILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILI 167 (379)
Q Consensus 88 pls~~r~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~~~ 167 (379)
|.+++||+|..+.+|++.++.-++.-.++++.|+-+. .| .++...+...+.-+++.++|+++|+|..|..+|
T Consensus 251 pc~FLk~Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~-----~d---W~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP 322 (524)
T KOG4303|consen 251 PCSFLKDLKIVSRLSFFCTISHLVINLIMVLYCLSFV-----SD---WSWSKVTFSIDINTFPISVGMIVFSYTSQIFLP 322 (524)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hh---ccceeEEEEEEcccCceEEEEEEEeeeceeecc
Confidence 9999999999999999998876555455554443221 11 222222333444457789999999999999999
Q ss_pred HHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhcccccCccccccccccCCCCChHHHHHHHHHHHHHHHHhhcc
Q 016969 168 EIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQV 247 (379)
Q Consensus 168 ~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~v~~~il~n~~~~~~~~~~~~~~~~~~i~~~~sypl 247 (379)
+++..|++| .+|.-.+.++-+..+++-..+|.+||++|||+|+..|++|+| ++....++++++++..++|||+
T Consensus 323 ~LEGNM~~p----s~Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp---~qsfk~~VN~fLV~KALLSYPL 395 (524)
T KOG4303|consen 323 NLEGNMKNP----SQFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLP---NQSFKILVNLFLVVKALLSYPL 395 (524)
T ss_pred ccccccCCh----hHheeeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCC---ccchhhhhhHHHHHHHHHcCCc
Confidence 999999987 789999999999999999999999999999999999999997 4556678999999999999999
Q ss_pred cccchHHHHHHHHHhhCCCCCCCCcccccCCCCCCcCCCchhHHHHHHHHHHHHHHHHHHccChHHHHHHHhhhhhhhhH
Q 016969 248 YSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLT 327 (379)
Q Consensus 248 ~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~l~~vl~lvGs~~~~~l~ 327 (379)
-++.+.+.+|+-+....|+..+..- |. |+ -+.+.+.+.+|..+++.+.++|+.+|++..+++|+|+++++.++
T Consensus 396 PfyAAvelLe~nlF~g~p~t~Fpsc-ys---~D---g~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLs 468 (524)
T KOG4303|consen 396 PFYAAVELLENNLFLGYPQTPFPSC-YS---PD---GSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLS 468 (524)
T ss_pred hHHHHHHHHHHhhhcCCCCCCCcee-eC---CC---cchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHH
Confidence 8888888888877654454433211 11 10 01122346789999999999999999999999999999999999
Q ss_pred hhhhhHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 016969 328 IYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS 379 (379)
Q Consensus 328 fi~P~l~y~~~~~~~~~~~~~~~~~~i~~~g~~~~v~gt~~si~~li~~~~~ 379 (379)
|+.|++||++++++..-......+..+++.|...+|.|.|.|-.++++++.+
T Consensus 469 FiwP~lFHl~ik~~~L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~~ 520 (524)
T KOG4303|consen 469 FIWPALFHLYIKEKTLNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAINS 520 (524)
T ss_pred HHHHHHHHHHHHHHhhhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHhc
Confidence 9999999999765443223345677889999999999999999999998764
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.90 E-value=1.4e-22 Score=198.19 Aligned_cols=338 Identities=14% Similarity=0.154 Sum_probs=227.8
Q ss_pred cccCC-CCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHH
Q 016969 7 FYFYL-PDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAV 85 (379)
Q Consensus 7 ~~~~~-~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i 85 (379)
.+++. .+|.|++++.+||+++++.++...+.++|.+.+|.+..+|.+++.+++.. +. ++ .+++.+.+++..+
T Consensus 66 ~~~~~~~~~~~~~~~~~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~-~~----~~--~~r~~~~lif~~~ 138 (415)
T COG0814 66 SSPNGKASITSLVEDYLGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQF-GL----NP--LPRKLGSLIFALV 138 (415)
T ss_pred hCCCCcccHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhc-cc----CC--cchHHHHHHHHHH
Confidence 34555 49999999999999999999999999999999999999999999997521 11 11 3456667778888
Q ss_pred HHHhccCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhhHHHHHHHHhhhHHhhcCCchh
Q 016969 86 QLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLI 165 (379)
Q Consensus 86 ~~pls~~r~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~ 165 (379)
+.++++.++...++..|.+........++... +.....+. ......|..+ .....+...++|++.|||+||++
T Consensus 139 ~~~l~~~~~~~~lk~ts~l~~~~v~~~~~l~~----~~~~~~~~--~~l~~~~~~~-~~~~~~~~~~ipv~vfsF~~h~~ 211 (415)
T COG0814 139 LAFLSWLGTLAVLKITSLLVFGKVIYLVLLVV----YLIPHWNP--ANLFALPSAS-QSFWKYLLLAIPVFVFSFGFHGN 211 (415)
T ss_pred HHHHHHhchhHHHHHHHHHHHHHHHHHHHHHH----HHhcccCH--HHHhcccccc-hhhHHHHHHHhhHHHhhhhCCcc
Confidence 88899999999999999998875433222211 11111010 0011111011 23334578899999999999999
Q ss_pred HHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhcccccCccccccccccCCCCChHHHHHHHHHHHHHHHHhh
Q 016969 166 LIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGY 245 (379)
Q Consensus 166 ~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~v~~~il~n~~~~~~~~~~~~~~~~~~i~~~~sy 245 (379)
+|++++||+++ ++++.+|+...+..+..++|..+++++|..+|+++.++++.+.++ ++.+.. .+.....+...++
T Consensus 212 i~si~~~~~~~--~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~--~~~~l~-~~~~~~~~~~~~~ 286 (415)
T COG0814 212 IPSLVNYMRKN--SKKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQ--NISLLS-ALAGVINSPILSI 286 (415)
T ss_pred chHHHHHhccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCc--hHHHHH-HHHHhhcchHHHH
Confidence 99999999975 334599999999999999999999999999999999999999873 333221 2222333333555
Q ss_pred cccccchHHHHHHHHHhh---CC--CCCCC-CcccccCCCCCCcCCCchhH--HHHHHHHHHHHHHHHHHccChHHHHHH
Q 016969 246 QVYSQPIFAHFEKWICEK---FP--ENGFL-NNEFFLKPPLMPAFRWNPLR--LCFRTVYVVSVTAIAMSFPYFNQVLGV 317 (379)
Q Consensus 246 pl~~~p~~~~ie~~~~~~---~~--~~~~~-~~~~~~~~p~~~~~~~~~~~--~~~r~~~~~~~~~iA~~iP~l~~vl~l 317 (379)
|...++.+...-..++.. ++ ++... +++. + +++..+.+ .......++..+..+...|..+.+++-
T Consensus 287 ~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~~~~~----~---~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~ 359 (415)
T COG0814 287 ALNIFALFAIATSFLGVYLGLFEGLADLFKKSNSK----P---GRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIAT 359 (415)
T ss_pred HHHHHHHHHHHHHHhCchhhHHHhhhHHHHhccCc----c---cchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 555555554332222110 00 00000 0000 0 11112222 233344556788889999999999999
Q ss_pred HhhhhhhhhHhhhhhHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016969 318 IGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSI 370 (379)
Q Consensus 318 vGs~~~~~l~fi~P~l~y~~~~~~~~~~~~~~~~~~i~~~g~~~~v~gt~~si 370 (379)
+|+..+..+.++.|...+.|....+.++.+...+.+++++|+..++.-.++.+
T Consensus 360 iga~i~~~ll~~~p~~~~~~~~~~~~~~g~~~~~~~v~~~Gi~~~~~~~~~~~ 412 (415)
T COG0814 360 IGAPIIPALLFIKPRKLIYKLPALKVYGGNFLLLLLVLLFGILVILSPFLATF 412 (415)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998888543222221113466677888777776666543
No 9
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.59 E-value=8.2e-14 Score=135.86 Aligned_cols=292 Identities=11% Similarity=0.040 Sum_probs=188.3
Q ss_pred ccCCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHH
Q 016969 8 YFYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQL 87 (379)
Q Consensus 8 ~~~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~ 87 (379)
+++..+|.|.+++++||+++.++.+...+.+++.+.+|.+..++.+..+++.... . ..+.+...+++..++.
T Consensus 55 ~p~~~~~~~~~~~~~G~~~g~~~~~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~----~----~~~~~~~~~~~~~v~~ 126 (381)
T TIGR00837 55 YPGGASFNTIAKDLLGKTGNIIAGLSLLFVLYILTYAYISGGGSILSRLIGEYFG----F----PWSARAIVLIFTVLFG 126 (381)
T ss_pred CCCCCCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcC----C----CccHHHHHHHHHHHHH
Confidence 4457899999999999999999999999999999999999999999998864211 0 1222223333333333
Q ss_pred HhccCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhhHHHHHHHHhhhHHhhcCCchhHH
Q 016969 88 ILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILI 167 (379)
Q Consensus 88 pls~~r~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~~~ 167 (379)
++ ..+..|..+.++.+.+...+...++.+...+.+. + . + ...... .......+...+++...++|++|.+++
T Consensus 127 ~l-~~~G~~~~~~v~~i~~~~~l~~l~~~ii~~~~~~-~-~--~-~~~~~~--~~~~~~~~~~~a~~~~~~~fg~~~~i~ 198 (381)
T TIGR00837 127 SF-VWLSTSAVDRITRVLIFGKIIAFALVFSGLLPHV-K-G--D-LLLDVA--LDTSYWPYILSALPVCLTSFGFHGNVP 198 (381)
T ss_pred HH-HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-c-H--H-HHhcCc--cccccHHHHHHHHHHHHHHHHcccccH
Confidence 43 3456677777777766544332222222222111 1 0 0 000000 001122356788999999999998999
Q ss_pred HHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhcccccCcccc-------c---cccccCC-CCChHHHHHHHHH
Q 016969 168 EIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPG-------N---LLTGFGF-YEPYWLIDLANAF 236 (379)
Q Consensus 168 ~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~v~~-------~---il~n~~~-~~~~~~~~~~~~~ 236 (379)
++.+|++|| +||.+|+...+..++.++|+.+........+.+.-. + ....+.. .+..+...++..+
T Consensus 199 ~~~~~~~~~---~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ 275 (381)
T TIGR00837 199 SLYKYYDGN---VKKVKKSILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELF 275 (381)
T ss_pred HHHHHhccC---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHH
Confidence 999999864 488999999999999999998866655555432111 1 1111110 0122344566677
Q ss_pred HHHHHHHhhcccccchHHHHHHHHHhhCCCCCCCCcccccCCCCCCcCCCchhHHHHHHHHHHHHHHHHHHccChH-HHH
Q 016969 237 IVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFN-QVL 315 (379)
Q Consensus 237 ~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~l~-~vl 315 (379)
..+.+..|+.-.....++..++.+++. + + . ..|.....+..+...++|.+.|+.. ..+
T Consensus 276 ~~~al~tS~~g~~l~~~d~l~~~~~~~--~------------~----~---~~~~~~~~~~~~~pl~~a~~~p~~~~~~l 334 (381)
T TIGR00837 276 SNFALASSFLGVTLGLFDYLADLFKFD--D------------S----K---KGRFKTGLLTFLPPLVFALFYPEGFLYAI 334 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC--c------------c----c---CCCchhhhhhHHhHHHHHHHhhHHHHHHH
Confidence 777788888766666677766555321 0 0 0 1123334444567788899999977 899
Q ss_pred HHHhhhhhhhhHhhhhhHHHHHhcC
Q 016969 316 GVIGGVIFWPLTIYFPVEMYFKQMN 340 (379)
Q Consensus 316 ~lvGs~~~~~l~fi~P~l~y~~~~~ 340 (379)
+..| +.++.+.+++|+++++|.||
T Consensus 335 ~~~G-~~~~~~~~~~p~l~~~~~r~ 358 (381)
T TIGR00837 335 GYAG-LAATIWAVIIPALLAWKARK 358 (381)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 9999 88999999999999998654
No 10
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.42 E-value=3e-11 Score=117.81 Aligned_cols=291 Identities=15% Similarity=0.164 Sum_probs=173.7
Q ss_pred cccCCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHH
Q 016969 7 FYFYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQ 86 (379)
Q Consensus 7 ~~~~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~ 86 (379)
.+++..+|.+++++.+||+++++..+...+..++.+++|..-.++.+++.++... +. +.+++.-.+++.++.
T Consensus 60 ~~~~~~~~~~~a~~~lG~~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~----~~----~~~~~~~~~~f~~i~ 131 (394)
T PF03222_consen 60 NTPEGSSLTSMAEKYLGKKGGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQL----GT----DLSPWLSSLLFTIIF 131 (394)
T ss_pred hCCCCCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhc----CC----CCcHHHHHHHHHHHH
Confidence 3457899999999999999999999999999999999999999999999987521 11 122332223333332
Q ss_pred HHhccCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhhHHHHHHHHhhhHHhhcCCchhH
Q 016969 87 LILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLIL 166 (379)
Q Consensus 87 ~pls~~r~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~~ 166 (379)
-.+.+. .-|.....+.+-....+.. ++++........+.+ .+... .+...++...+.++|+..+||+.|..+
T Consensus 132 ~~iv~~-g~~~v~~~n~~lv~~~i~~-~~~l~~~~~p~~~~~----~L~~~--~~~~~~~~~~~~~lPv~~~Sf~f~~iv 203 (394)
T PF03222_consen 132 GGIVYF-GTKAVDRINRVLVFGMIIS-FIILVVYLIPHWNPS----NLLDA--PPSPSDWSYILPALPVLVFSFGFHNIV 203 (394)
T ss_pred HHHHHh-hHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhcCHH----Hhhcc--ccccccHHHHHHHHHHHHHHHHHHhhh
Confidence 222222 1223333332222111111 111111111111100 01110 011223334678999999999999999
Q ss_pred HHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhh--hhhhcc---------cccCcccc--ccccccCCCCChHHHHHH
Q 016969 167 IEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFC--GGFGYA---------AFGDNTPG--NLLTGFGFYEPYWLIDLA 233 (379)
Q Consensus 167 ~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~--g~~GY~---------~fG~~v~~--~il~n~~~~~~~~~~~~~ 233 (379)
|++.+.+++ ++||.+|+...+..+..++|+.. .+.|-+ .-|+++.+ ..+.+.. ++.+...+.
T Consensus 204 Psl~~~~~~---d~~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~i~~~~ 278 (394)
T PF03222_consen 204 PSLVKYLGG---DPKKIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVS--GSPWISILG 278 (394)
T ss_pred HHHHHHhCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhc--CCcHHHHHH
Confidence 999999985 34788998888888888888764 333311 11111111 1222221 223334456
Q ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHhhCCCCCCCCcccccCCCCCCcCCCchhHHHHHHHHHHHHHHHHHHccC-hH
Q 016969 234 NAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPY-FN 312 (379)
Q Consensus 234 ~~~~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~-l~ 312 (379)
.++-.+.+.+||-=...-.+|.++..++. +++ ...|...-.+..+...++|...|+ +-
T Consensus 279 ~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~--~~~-------------------~~~r~~~~~ltf~ppl~~a~~~p~~F~ 337 (394)
T PF03222_consen 279 SIFAFFAIATSFLGVYLGLFDFLADLFKL--KNN-------------------SSGRLKTWLLTFLPPLIFALLFPNGFL 337 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC--Ccc-------------------ccchHHHHHHHHHhHHHHHHHCcHHHH
Confidence 66667777777643334556666655521 110 012333333345567888999997 88
Q ss_pred HHHHHHhhhhhhhhHhhhhhHHHHHhcC
Q 016969 313 QVLGVIGGVIFWPLTIYFPVEMYFKQMN 340 (379)
Q Consensus 313 ~vl~lvGs~~~~~l~fi~P~l~y~~~~~ 340 (379)
..+++.| ...+.+..++|+++.+|.||
T Consensus 338 ~al~~aG-~~~~il~~ilP~~m~~~~r~ 364 (394)
T PF03222_consen 338 IALGYAG-IGIAILLGILPALMVWKARK 364 (394)
T ss_pred HHHHhhc-HHHHHHHHHHHHHHHHHHHc
Confidence 9999999 99999999999999999654
No 11
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.35 E-value=1.2e-10 Score=113.47 Aligned_cols=316 Identities=12% Similarity=0.088 Sum_probs=187.5
Q ss_pred cccCCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHH
Q 016969 7 FYFYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQ 86 (379)
Q Consensus 7 ~~~~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~ 86 (379)
.+++..++.+++++.+||+++++..++.....+..+.+|..-.|+.+++.++.+..+ +.+.....+.+.++.
T Consensus 60 ~~~~~~~~~~~a~~~LG~~g~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~--------~i~~~~~~l~F~~~~ 131 (403)
T PRK15132 60 HVPADTGLGTLAKRYLGRYGQWLTGFSMMFLMYALTAAYISGAGELLASSISDWTGI--------SMSPTAGVLLFTLVA 131 (403)
T ss_pred CCCCCCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccC--------CCChHHHHHHHHHHH
Confidence 456778999999999999999999999999999999999999999999998653211 122333344444333
Q ss_pred HHhccCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhhHHHHHHHHhhhHHhhcCCchhH
Q 016969 87 LILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLIL 166 (379)
Q Consensus 87 ~pls~~r~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~~ 166 (379)
-...+. ..|...+.+-+=....++. ++.....+.... +. ....+.+...+ -...++|++.+||+.|.++
T Consensus 132 ~~iv~~-g~~~v~~~n~~L~~~~ii~-~~~~~~~l~p~~-----~~--~~L~~~~~~~~--~~~~~iPvl~~SFgfh~iI 200 (403)
T PRK15132 132 GGVVCV-GTSSVDLFNRFLFSAKIIF-LVVMLALMMPHI-----HK--VNLLTLPLQQG--LALSAIPVIFTSFGFHGSV 200 (403)
T ss_pred HHHHhc-cHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc-----CH--HHHhcCCcccc--HHHHHHHHHHHHhhCCccc
Confidence 222222 2233333332211111111 111111111111 10 00100011111 2678999999999999999
Q ss_pred HHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhcccccCcc-----cc-----ccccccCCC-CChHHHHHHHH
Q 016969 167 IEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT-----PG-----NLLTGFGFY-EPYWLIDLANA 235 (379)
Q Consensus 167 ~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~v-----~~-----~il~n~~~~-~~~~~~~~~~~ 235 (379)
|++.+.+++ +.+|.+|+...+..+..++|+..=......-+.+. ++ +++..+... +..+...++..
T Consensus 201 psl~~y~~~---~~~~~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 277 (403)
T PRK15132 201 PSIVSYMGG---NIRKLRWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHL 277 (403)
T ss_pred HHHHHHhCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHH
Confidence 999999986 34788999988888888888765444444333221 11 223332211 12344455666
Q ss_pred HHHHHHHHhhcccccchHHHHHHHHHhhCCCCCCCCcccccCCCCCCcCCCchhHHHHHHHHHHHHHHHHHHccC-hHHH
Q 016969 236 FIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPY-FNQV 314 (379)
Q Consensus 236 ~~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~-l~~v 314 (379)
...+.+..||-=.....+|.++..++.+ + + ...|...-.+..+-.+++|...|+ |...
T Consensus 278 fa~~Ai~TSFlGv~lgl~d~l~d~~~~~--~-----~--------------~~~r~~~~~l~flppli~a~~~P~~F~~a 336 (403)
T PRK15132 278 FADLALATSFLGVALGLFDYLADLFQRR--N-----T--------------VGGRLQTGLITFLPPLAFALFYPRGFVMA 336 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccC--c-----c--------------ccCCchhehhhHHHHHHHHHHhHHHHHHH
Confidence 6666677776433334566665554211 0 0 012334444566788999999997 8889
Q ss_pred HHHHhhhhhhhhHhhhhhHHHHHhcCcc---hhh--HHHHHHHHHHHHHHHHHHHHH
Q 016969 315 LGVIGGVIFWPLTIYFPVEMYFKQMNIE---AWT--RKWVMLRVFSYVCFIVSTFGL 366 (379)
Q Consensus 315 l~lvGs~~~~~l~fi~P~l~y~~~~~~~---~~~--~~~~~~~~i~~~g~~~~v~gt 366 (379)
+++.|. ..+.+.+++|+++-.|.+|.+ +.+ .....+++.+++|++..+.-.
T Consensus 337 l~~aG~-~~ail~~ilP~~m~~~~r~~~~~~~y~v~gg~~~~~~v~~~G~~~i~~~~ 392 (403)
T PRK15132 337 LGYAGV-ALAVLALLLPSLLVWQSRKQNPQAGYRVKGGRPALALVFLCGIAVIGIQF 392 (403)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHhhcCCCCCccCCCChHHHHHHHHHHHHHHHHHH
Confidence 999886 578999999999999865432 221 023345666677766555433
No 12
>PRK10483 tryptophan permease; Provisional
Probab=99.24 E-value=1.7e-09 Score=105.12 Aligned_cols=292 Identities=12% Similarity=0.054 Sum_probs=173.7
Q ss_pred cccCCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHH
Q 016969 7 FYFYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQ 86 (379)
Q Consensus 7 ~~~~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~ 86 (379)
.+++..++..++|+.+||+|+.+..++.....++.+++|+--.|+.+++.++.. +. ..+++.-.+++.++.
T Consensus 68 ~~~~g~~~~tma~~~LG~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~--~~-------~i~~~~~~llF~~~~ 138 (414)
T PRK10483 68 NYRIGSSFDTITKDLLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEM--SL-------NVPARAAGFGFALLV 138 (414)
T ss_pred cCCCCCCHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhc--CC-------CCcHHHHHHHHHHHH
Confidence 356788999999999999999999999999999999999999999999998641 10 122222233444444
Q ss_pred HHhccCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhhHHHHHHHHhhhHHhhcCCchhH
Q 016969 87 LILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLIL 166 (379)
Q Consensus 87 ~pls~~r~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~~ 166 (379)
-...+. ..|...+.+-+=....+...++.+. .+....+.+ .+.+.+ ......+.....++|++.++|+.|.++
T Consensus 139 ~~iv~~-gt~~vd~~n~~l~~~~i~~f~~~~~-~l~~~i~~~----~L~~~~-~~~~~~~~~~~~alPvl~~SFgfh~iI 211 (414)
T PRK10483 139 AFVVWL-STKAVSRMTAIVLGAKVITFFLTFG-SLLGHVQPA----TLFNVA-ESNASYAPYLLMTLPFCLASFGYHGNV 211 (414)
T ss_pred HHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHH-HHHhhcCHH----HHhccc-cccchhHHHHHHHHHHHHhhccCCCcc
Confidence 334333 2244444442221111111111111 111111100 011100 011112223678999999999999999
Q ss_pred HHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhh--hhhhccc---------ccCccccccccccCCC-CChHHHHHHH
Q 016969 167 IEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFC--GGFGYAA---------FGDNTPGNLLTGFGFY-EPYWLIDLAN 234 (379)
Q Consensus 167 ~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~--g~~GY~~---------fG~~v~~~il~n~~~~-~~~~~~~~~~ 234 (379)
|++.+.+++ +.+|.+|+...+..+..++|+.. .+.|-.. -|+++ +..+..+... ++.+...+..
T Consensus 212 Psl~~y~~~---d~~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni-~~L~~~l~~~~~~~~i~~~~~ 287 (414)
T PRK10483 212 PSLMKYYGK---DPKTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNI-DVLVQALSGVLNSRSLDLLLV 287 (414)
T ss_pred hHHHHHhCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCh-HHHHHHHHHhcCChHHHHHHH
Confidence 999999985 23688999999999998888773 3333222 12222 1111222110 1223334556
Q ss_pred HHHHHHHHHhhcccccchHHHHHHHHHhhCCCCCCCCcccccCCCCCCcCCCchhHHHHHHHHHHHHHHHHHHccC-hHH
Q 016969 235 AFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPY-FNQ 313 (379)
Q Consensus 235 ~~~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~-l~~ 313 (379)
++-.+.+..||-=.....+|.++..++. +++ ...|...-.+..+-..++|...|+ |=.
T Consensus 288 ~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~--~~~-------------------~~~r~~~~~ltflPPl~~al~~P~~Fl~ 346 (414)
T PRK10483 288 VFSNFAVASSFLGVTLGLFDYLADLFGF--DDS-------------------AMGRFKTALLTFLPPVVGGLLFPNGFLY 346 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCc-------------------cccceeeehhhHhhHHHHHHHhHHHHHH
Confidence 6666677777643334556666655532 110 012222222445678889999998 888
Q ss_pred HHHHHhhhhhhhhHhhhhhHHHHHhcC
Q 016969 314 VLGVIGGVIFWPLTIYFPVEMYFKQMN 340 (379)
Q Consensus 314 vl~lvGs~~~~~l~fi~P~l~y~~~~~ 340 (379)
-++..|.. ++.+.-++|+++-.|.||
T Consensus 347 AL~yAG~~-~~il~~ilP~lM~~~~Rk 372 (414)
T PRK10483 347 AIGYAGLA-ATIWAAIVPALLARASRK 372 (414)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 99999966 677888999999999654
No 13
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.22 E-value=1.7e-09 Score=105.24 Aligned_cols=336 Identities=10% Similarity=0.031 Sum_probs=189.5
Q ss_pred cccCCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHH
Q 016969 7 FYFYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQ 86 (379)
Q Consensus 7 ~~~~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~ 86 (379)
+.++..+|.|++++.+||+++.+..++..+..+..+.+|...+.+.+++.+.+ +-+. + ..++....+++..++
T Consensus 77 ~~~~~~~i~~v~~~~lG~~g~~i~~ilYff~ly~ll~aY~~~itn~l~sfl~~----ql~~-~--~~~r~l~slifv~~l 149 (443)
T PRK13629 77 GSNPSGNITETVEEHFGKTGGVVITFLYFFAICPLLWIYGVTITNTFMTFWEN----QLGF-A--PLNRGFVALFLLLLM 149 (443)
T ss_pred cCCCCCCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcCc-C--CccHHHHHHHHHHHH
Confidence 33677899999999999999999999999999999999998887777765432 1111 0 123333333444433
Q ss_pred HHhccCCCCCchhHHHH---HHHHHHHHHHHHhhhheeeeeecC-CcccccccccccCchhhHHHHHHHHhhhHHhhcCC
Q 016969 87 LILSQAPDFHNIQSLSV---IAAVMSFAYSFIGFGLGVAKVIGN-GFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPY 162 (379)
Q Consensus 87 ~pls~~r~l~~l~~~S~---~~~~~~~~~~~i~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~faf~~ 162 (379)
....+.-+ |.+-+.+- ...+.. ++.+...+....+. +-.+.+....++............++|++.|||+.
T Consensus 150 ~~iv~~G~-~~v~kv~~~Lv~~~i~~----l~~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f 224 (443)
T PRK13629 150 AFVIWFGK-DLMVKVMSYLVWPFIAS----LVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNF 224 (443)
T ss_pred HHHHHhhH-HHHHHHHHHHHHHHHHH----HHHHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhc
Confidence 33333322 33323222 222211 11111111111100 00000000000000101112367889999999999
Q ss_pred chhHHHHHhHhCCC-----CCc--hhhhhhhhHHHHHHHHHHHhhhhhhhcccccCcc-------ccccccc----cCCC
Q 016969 163 SLILIEIQDTLKSP-----PPA--NQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT-------PGNLLTG----FGFY 224 (379)
Q Consensus 163 ~~~~~~i~~~M~~p-----~p~--~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~v-------~~~il~n----~~~~ 224 (379)
|+++|++...+|+. .++ .+|-+++...+..+..++|+..-+..-..-+++. +.+++.. ++..
T Consensus 225 ~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~ 304 (443)
T PRK13629 225 SPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASM 304 (443)
T ss_pred cccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhc
Confidence 99999988884321 013 5788888888888888877766665555555432 1222222 2210
Q ss_pred CC------hHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHhhCCCCCCCCcccccCCCCCCcCCCchhHHHHHHHHH
Q 016969 225 EP------YWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYV 298 (379)
Q Consensus 225 ~~------~~~~~~~~~~~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~~ 298 (379)
.. .+...+..+...+.+..||-=.....+|.++..+.+...+.+ ++ +. +.+..+......+.
T Consensus 305 ~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~~--~~----~~------~~~~~~~~~~~~~~ 372 (443)
T PRK13629 305 TGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKGD--KT----KV------SLGKLNTISMIFIM 372 (443)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--cc----cc------CHHHHHHHHHHHHH
Confidence 00 123334444455566666643344667777777632000100 00 11 11234555666777
Q ss_pred HHHHHHHHHccChHHHHHHHhhhhhhhhHhhhhhHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 016969 299 VSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLV 367 (379)
Q Consensus 299 ~~~~~iA~~iP~l~~vl~lvGs~~~~~l~fi~P~l~y~~~~~~~~~~~~~~~~~~i~~~g~~~~v~gt~ 367 (379)
+.++.+|..=|++=++++-+|+-....+.|++|...-.|....++.+. +..|+++++.|+++...-.|
T Consensus 373 ~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp~l~~yr~-~~~n~fv~~~Gl~~i~~~~~ 440 (443)
T PRK13629 373 GSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAKYRG-RLDNVFVTVIGLLTILNIVY 440 (443)
T ss_pred HHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccHHHHHhCC-CchhHHHHHHHHHHHHHHHH
Confidence 889999999999999999888888889999999988877543333322 23477777888766544433
No 14
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.15 E-value=7.1e-09 Score=100.72 Aligned_cols=296 Identities=12% Similarity=0.064 Sum_probs=169.9
Q ss_pred cccCCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHH
Q 016969 7 FYFYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQ 86 (379)
Q Consensus 7 ~~~~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~ 86 (379)
.+++..++..++|+.+||+|+.+..++.....++.+++|+--.|+.+++.++... +. +.+++.-.++++.+.
T Consensus 66 ~~~~g~~l~tma~~~LG~~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~----~~----~i~~~~~~llF~~~~ 137 (415)
T PRK09664 66 NYPVGSSFNTITKDLIGNTWNIISGITVAFVLYILTYAYISANGAIISETISMNL----GY----HANPRIVGICTAIFV 137 (415)
T ss_pred cCCCCCCHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhc----cC----CCcHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999999999999999999985311 10 122222233444444
Q ss_pred HHhccCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhhHHH-HHHHHhhhHHhhcCCchh
Q 016969 87 LILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMW-LVAQALGDIAFAYPYSLI 165 (379)
Q Consensus 87 ~pls~~r~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~faf~~~~~ 165 (379)
-+..+... +...+.+-+=....+...++.+. ......+.. .+.+.+........+ ....++|++.++|+.|.+
T Consensus 138 ~~~v~~gt-~~vd~~nr~l~~~~ii~f~~~~~-~l~~~i~~~----~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~i 211 (415)
T PRK09664 138 ASVLWISS-LAASRITSLFLGLKIISFVIVFG-SFFFQVDYS----ILRDATSTTAGTSYFPYIFMALPVCLASFGFHGN 211 (415)
T ss_pred HHHHHhch-hHHHHHHHHHHHHHHHHHHHHHH-HHhhcccHH----HHhcCccccccchHHHHHHHHHHHHHHhhhCCCc
Confidence 44443322 33333332211111111111111 111111100 011100001011112 366799999999999999
Q ss_pred HHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhh--hhhhcc---------cccCccccccccccCCCCChHHHHHHH
Q 016969 166 LIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFC--GGFGYA---------AFGDNTPGNLLTGFGFYEPYWLIDLAN 234 (379)
Q Consensus 166 ~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~--g~~GY~---------~fG~~v~~~il~n~~~~~~~~~~~~~~ 234 (379)
+|++.+.+++ +.+|.++++.....+..++|+.. .+.|-. .-|++++.-+..-....+..+...+..
T Consensus 212 IPsl~~y~~~---d~~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~ 288 (415)
T PRK09664 212 IPSLIICYGK---RKDKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLL 288 (415)
T ss_pred chHHHHHhCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHH
Confidence 9999999985 23677777776666666677332 222211 222222221111111002334445666
Q ss_pred HHHHHHHHHhhcccccchHHHHHHHHHhhCCCCCCCCcccccCCCCCCcCCCchhHHHHHHHHHHHHHHHHHHccC-hHH
Q 016969 235 AFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPY-FNQ 313 (379)
Q Consensus 235 ~~~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~-l~~ 313 (379)
++..+.+..||-=.....+|.+...++. +++ ...|...-.+..+-..+.|.+.|+ |=.
T Consensus 289 ~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~--~~~-------------------~~~r~~~~~ltflPPl~~al~~P~gFl~ 347 (415)
T PRK09664 289 VFSNLAVASSFFGVTLGLFDYLADLFKI--DNS-------------------HGGRFKTVLLTFLPPALLYLIFPNGFIY 347 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCc-------------------cccceeeehhhHhhhHHHHHHhhHHHHH
Confidence 6666677777643333556666655522 111 012222223345678889999998 888
Q ss_pred HHHHHhhhhhhhhHhhhhhHHHHHhcCc
Q 016969 314 VLGVIGGVIFWPLTIYFPVEMYFKQMNI 341 (379)
Q Consensus 314 vl~lvGs~~~~~l~fi~P~l~y~~~~~~ 341 (379)
-++..|.. ++.+.-++|+++-.|.||+
T Consensus 348 AL~yAG~~-~~il~~ilP~lM~~~~Rk~ 374 (415)
T PRK09664 348 GIGGAGLC-ATIWAVIIPAVLAIKARKK 374 (415)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHhcc
Confidence 99999986 6688889999999996543
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.12 E-value=2e-09 Score=104.98 Aligned_cols=320 Identities=8% Similarity=0.018 Sum_probs=186.9
Q ss_pred CCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHHh
Q 016969 10 YLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLIL 89 (379)
Q Consensus 10 ~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl 89 (379)
+..++.|++++.|||+++.+..+......+..+.+|....++.+.+.+.... + .+. +.+....+..+..+-.
T Consensus 64 p~~~i~~~~~~~fGk~~G~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~-~---~~~----p~~~i~~lilv~il~~ 135 (397)
T TIGR00814 64 PCEDITEVVEEHFGKNWGILITLLYFFAIYPILLIYSVAITNDSASFLVNQL-G---TAP----PLRGLLSLALILILVA 135 (397)
T ss_pred CCCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C---CCC----cHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999888886421 1 111 1121222222222222
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhhHHHHHHHHhhhHHhhcCCchhHHHH
Q 016969 90 SQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEI 169 (379)
Q Consensus 90 s~~r~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~~~~i 169 (379)
...+..+.+..++-+-....++..++.....+ ...+ . + .+...| .......+...+++...+||.+|.++++.
T Consensus 136 iv~~G~~~i~r~~~il~~~~ii~l~~l~~~li-p~~~-~--~-~L~~~p--~~~~~~~~i~~alpv~~~SF~~~~iIssl 208 (397)
T TIGR00814 136 IMSFGEKLLFKIMGPLVFPLVLILVLLSLYLI-PHWN-G--A-NLTTFP--SFNGFLKTLWLTIPVMVFSFNHSPIISSF 208 (397)
T ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcC-H--H-HHhcCC--cccchHHHHHHHHHHHHHHHHccccchHH
Confidence 23335565655554433221111111111111 1110 0 0 011111 01122345788999999999999999998
Q ss_pred HhH----hCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhcccccCcc-----ccc--cccccCCC-CChHHHHHHHHHH
Q 016969 170 QDT----LKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT-----PGN--LLTGFGFY-EPYWLIDLANAFI 237 (379)
Q Consensus 170 ~~~----M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~v-----~~~--il~n~~~~-~~~~~~~~~~~~~ 237 (379)
..+ .++|+.+.+|.+|+...+..+..++|+..-+..-...+.+. ++| ++..+... +..+...+....-
T Consensus 209 ~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~ 288 (397)
T TIGR00814 209 AISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVA 288 (397)
T ss_pred HHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHH
Confidence 733 44222225778888888888888888777666666666433 122 12211100 1223333444555
Q ss_pred HHHHHHhhcccccchHHHHHHHHHhhCCCCCCCCcccccCCCCCCcCCCchhHHHHHHHHHHHHHHHHHHccChHHHHHH
Q 016969 238 VIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGV 317 (379)
Q Consensus 238 ~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~l~~vl~l 317 (379)
.+.+..||-=...-.++.++..+.+.. +.+ ++ +. +++..+......+.+.++.+|..=|++=++++-
T Consensus 289 ~~Ai~tSFlG~~lg~~e~l~~l~~~~~-~~~--~~----~~------~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~ 355 (397)
T TIGR00814 289 IVAISKSFFGHYLGAREGLNGIVLNSL-KMK--GK----KI------NIRKLNRAIAIFIVLTTWIVAYINPSILSFIEA 355 (397)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHh-ccc--cc----cc------CHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHH
Confidence 556666665555677888888763211 100 00 11 112334455566778899999999999999997
Q ss_pred HhhhhhhhhHhhhhhHHHHHhcCcchhhHHHHHHHHHHHHH
Q 016969 318 IGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVC 358 (379)
Q Consensus 318 vGs~~~~~l~fi~P~l~y~~~~~~~~~~~~~~~~~~i~~~g 358 (379)
+|+-..+.+.|++|...-.|....++.+.++ .|+++++.|
T Consensus 356 ~~gp~~a~i~~~~p~~~~~~v~~l~~~~~~~-~~~fv~~~g 395 (397)
T TIGR00814 356 LGGPIIAMILFLMPMYAIYKVPALKKYRGRI-SNVFVTVIG 395 (397)
T ss_pred hhHHHHHHHHHHHHHHHHHccHHHHHhCCCc-chheeEeee
Confidence 7888888999999998887754333332222 355454444
No 16
>PRK10655 potE putrescine transporter; Provisional
Probab=98.49 E-value=2.4e-05 Score=77.76 Aligned_cols=56 Identities=11% Similarity=0.128 Sum_probs=47.9
Q ss_pred HHHHHhhhHHhhcCCchhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhc
Q 016969 148 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGY 206 (379)
Q Consensus 148 ~~~~~~g~~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY 206 (379)
++..++....|+|.|-......-+|+||| +|+.+|++..+...+.++|+.......
T Consensus 190 ~~~~~~~~~~~af~G~e~~~~~a~E~k~P---~r~iPrAi~~~~~~~~~~Y~l~~~~~~ 245 (438)
T PRK10655 190 AVGSSIAMTLWAFLGLESACANSDAVENP---ERNVPIAVLGGTLGAAVIYIVSTNVIA 245 (438)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHhhCc---cccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888899999999999999999998 278999999999999999988665433
No 17
>PRK11021 putative transporter; Provisional
Probab=98.37 E-value=0.0002 Score=70.56 Aligned_cols=63 Identities=17% Similarity=0.358 Sum_probs=52.1
Q ss_pred HHHHHHHhhhHHhhcCCchhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhh--hcccccC
Q 016969 146 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF--GYAAFGD 211 (379)
Q Consensus 146 ~~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~--GY~~fG~ 211 (379)
+.++..++....|+|.|-......-+|+||| +|+.+|+...+...+.++|+...+. +...++|
T Consensus 176 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P---~k~iPrAi~~~~~~~~~lYil~~~~~~~~~~~~~ 240 (410)
T PRK11021 176 WSGLFAALGVMFWCFVGIEAFAHLASEFKNP---ERDFPRALMIGLLLAGLVYWACTVVVLHFPAYGD 240 (410)
T ss_pred HHHHHHHHHHHHHHHhcHHHHHhhHHhccCc---cccccHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 3457788999999999999999999999998 2789999999999999999887654 3444444
No 18
>PRK10746 putative transport protein YifK; Provisional
Probab=98.29 E-value=7.4e-05 Score=74.83 Aligned_cols=55 Identities=18% Similarity=0.074 Sum_probs=45.5
Q ss_pred HHHHHHhhhHHhhcCCchhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhh
Q 016969 147 WLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF 204 (379)
Q Consensus 147 ~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~ 204 (379)
.++..++....|+|.|-......-+|+||| +|+.+|+...+.....++|......
T Consensus 200 ~g~~~~~~~~~faf~G~e~v~~~a~E~knP---~k~iP~Ai~~~~~~i~~~yv~~~~~ 254 (461)
T PRK10746 200 KGFLTALCIVVASYQGVELIGITAGEAKNP---QVTLRSAVGKVLWRILIFYVGAIFV 254 (461)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhcCh---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788899999999999999999999998 3789999888877777788765443
No 19
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=98.27 E-value=0.00014 Score=72.53 Aligned_cols=56 Identities=9% Similarity=0.134 Sum_probs=48.2
Q ss_pred HHHHHhhhHHhhcCCchhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhc
Q 016969 148 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGY 206 (379)
Q Consensus 148 ~~~~~~g~~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY 206 (379)
++..++....|+|.|-......-+|+||| +|+.+|+...+..++.++|..+.+.--
T Consensus 192 ~~~~~~~~~~~af~G~e~~~~~aeE~k~P---~r~iPrai~~s~~i~~v~Y~l~~~~~~ 247 (445)
T PRK10644 192 AIQSTLNVTLWSFIGVESASVAAGVVKNP---KRNVPIATIGGVLIAAVCYVLSSTAIM 247 (445)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhhCc---ccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888899999999999999999998 378999999999999999988877633
No 20
>PRK10249 phenylalanine transporter; Provisional
Probab=98.26 E-value=0.00018 Score=71.99 Aligned_cols=55 Identities=15% Similarity=0.141 Sum_probs=46.6
Q ss_pred HHHHHhhhHHhhcCCchhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhh
Q 016969 148 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFG 205 (379)
Q Consensus 148 ~~~~~~g~~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~G 205 (379)
++..++....|+|.|-......-+|+||| +|+.+|+...++....++|......-
T Consensus 210 ~~~~~~~~~~~af~G~e~~~~~a~E~~~P---~k~iPrai~~~~~~~~~~y~~~~~~~ 264 (458)
T PRK10249 210 GLILSLAVIMFSFGGLELIGITAAEARDP---EKSIPKAVNQVVYRILLFYIGSLVVL 264 (458)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHhcCH---hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999997 37899999999998899997754433
No 21
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=98.24 E-value=9e-05 Score=73.78 Aligned_cols=176 Identities=10% Similarity=-0.026 Sum_probs=96.0
Q ss_pred cCCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHH
Q 016969 9 FYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLI 88 (379)
Q Consensus 9 ~~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~p 88 (379)
...-..-.-+++.+|+....++.....+.......++....++.+..+++. .+...+.++...+ +-
T Consensus 68 P~~Gg~y~~~~~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~-------------~~~~~~~~~~~~~-~~ 133 (442)
T TIGR00908 68 PTAGGGYGFARRAFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPV-------------GPGWLAALVFYIV-FI 133 (442)
T ss_pred CCCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------CchhHHHHHHHHH-HH
Confidence 333444556688999998888888888877777777777777777665531 0111111111111 11
Q ss_pred hccCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecC-CcccccccccccCchhhHHHHHHHHhhhHHhhcCCchhHH
Q 016969 89 LSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGN-GFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILI 167 (379)
Q Consensus 89 ls~~r~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~~~ 167 (379)
+.-.+..|..+.++.+..+..++.+++.++... ...+. +...+...+..... .....+.+.++....|+|.|.....
T Consensus 134 ~ln~~g~~~~~~i~~~~~~~~~~~l~i~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~af~G~e~~~ 211 (442)
T TIGR00908 134 GINILGVGEAAKLEFVVTAVAIIALGVFIGAMV-PHFDSANLFNGPQTGASSFL-PGAYVGVFAAIPFAIWFFLAVEGVA 211 (442)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-ccCCHHHhccCCccCCCCCC-CccHHHHHHHHHHHHHHHHHHHHHH
Confidence 222233444444433322221111111111111 11000 00000000000001 1122356778888899999999999
Q ss_pred HHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhh
Q 016969 168 EIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGG 203 (379)
Q Consensus 168 ~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~ 203 (379)
..-+|+||| +|+.+|+...++.++..+|+..-+
T Consensus 212 ~~aeE~k~P---~r~iprai~~s~~~~~~~~~~~~~ 244 (442)
T TIGR00908 212 MAAEETKNP---KRDIPRGLIGAILTLLALAAGILV 244 (442)
T ss_pred HHHHHhcCc---ccccCHHHHHHHHHHHHHHHHHHH
Confidence 999999998 268899999998888888876644
No 22
>TIGR00909 2A0306 amino acid transporter.
Probab=98.24 E-value=9.3e-05 Score=73.35 Aligned_cols=184 Identities=13% Similarity=0.081 Sum_probs=108.1
Q ss_pred ccCCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccc---cCchhhH--HH
Q 016969 8 YFYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEY---SDTYYML--IF 82 (379)
Q Consensus 8 ~~~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~---~~~~~~~--i~ 82 (379)
+++.-..-+-.++.+||+....+.....+.....+.++....++.+..+++... .+.. ..+.. +...+.+ +.
T Consensus 63 ~p~~Gg~y~~~~~~~G~~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~i~ 139 (429)
T TIGR00909 63 LPVAGSPYTYAYEAMGELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVG--LDLP-AVLTAKPGNGGVFNLPALL 139 (429)
T ss_pred cCCCCcceeeHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--ccCc-hhhhcCCcccccccHHHHH
Confidence 333344556677899999999999888887777777888888888877775310 0000 00000 0111111 11
Q ss_pred HHHHHHhccCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhhHHHHHHHHhhhHHhhcCC
Q 016969 83 GAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPY 162 (379)
Q Consensus 83 ~~i~~pls~~r~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~faf~~ 162 (379)
..++.-....+..|..+.++.+.....+...++.+...+.+. +.+ + .... . +....+...++....|+|.|
T Consensus 140 ~~~~~~~l~~~g~~~~~~~~~v~~~~~i~~l~~~~~~~~~~~-~~~--~--~~~~---~-~~~~~~~~~~~~~~~~af~G 210 (429)
T TIGR00909 140 IVLFLTYILYLGAKESGKVNDILVVLKVAALLLFAALGAIHF-ASN--N--YTPF---M-PMGFGGVGAATALVFFAFIG 210 (429)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhhHHHhhC-cHH--h--cCCC---C-CCcHHHHHHHHHHHHHHHhh
Confidence 122222333445666666666555443322221122222211 111 1 1111 1 11223567788889999999
Q ss_pred chhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhc
Q 016969 163 SLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGY 206 (379)
Q Consensus 163 ~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY 206 (379)
........+|+||| +|+.+|+...++.++.++|+.......
T Consensus 211 ~e~~~~~~~E~~~p---~r~ip~ai~~~~~~~~v~Yil~~~~~~ 251 (429)
T TIGR00909 211 FEAISTAAEEVKNP---ERDIPKAIILSLIVVTLLYVLVAAVIL 251 (429)
T ss_pred HHHHHhhHHhccCc---cccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999997 268899999999999999998876544
No 23
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=98.21 E-value=0.00024 Score=70.68 Aligned_cols=61 Identities=13% Similarity=0.079 Sum_probs=51.9
Q ss_pred HHHHHHHhhhHHhhcCCchhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhcccc
Q 016969 146 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAF 209 (379)
Q Consensus 146 ~~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~f 209 (379)
..++..++....|+|.|-...-..-+|+||| +|+.+|+...+...+.++|+...+.-....
T Consensus 186 ~~~~~~a~~~~~faf~G~E~~~~~a~E~knP---~r~iPrAi~~~~~iv~ilYil~~~~~~~~~ 246 (435)
T PRK10435 186 GHAIIKSILLCLWAFVGVESAAVSTGMVKNP---KRTVPLATMLGTGLAGIIYIAATQVISGMF 246 (435)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhCc---cccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4567888899999999999999999999998 378999999999999999988877654333
No 24
>PRK10238 aromatic amino acid transporter; Provisional
Probab=98.20 E-value=0.00023 Score=71.17 Aligned_cols=175 Identities=13% Similarity=0.026 Sum_probs=91.5
Q ss_pred ccCCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHH
Q 016969 8 YFYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQL 87 (379)
Q Consensus 8 ~~~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~ 87 (379)
+...-++.+-+++.+|+...+.+.....+.....+.+.....++.++...+. .+...+..++..+..
T Consensus 72 ~P~aGg~y~~~~~~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~-------------~~~~~~~~i~~~~~~ 138 (456)
T PRK10238 72 EPVAGSFSHFAYKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPE-------------IPTWVSAAVFFVVIN 138 (456)
T ss_pred cCCCCCHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------------CcHHHHHHHHHHHHH
Confidence 4444556666788999999999999988887777777766666655433210 111222222211111
Q ss_pred HhccCCCCCchhHHHHHHHHHHHHHHH--Hhhhhe-eeeeecCCcccccccc-cccCchhhH-HHHHHHHhhhHHhhcCC
Q 016969 88 ILSQAPDFHNIQSLSVIAAVMSFAYSF--IGFGLG-VAKVIGNGFVMGSFSG-VSTTTSIEK-MWLVAQALGDIAFAYPY 162 (379)
Q Consensus 88 pls~~r~l~~l~~~S~~~~~~~~~~~~--i~~~~~-i~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~g~~~faf~~ 162 (379)
..-.+..|..+.++.+..+..+...+ +++.+. +.....++.. .... .+.....++ ..++..+++...|+|.|
T Consensus 139 -~lN~~gv~~~~~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G 215 (456)
T PRK10238 139 -AINLTNVKVFGEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQA--TVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGG 215 (456)
T ss_pred -HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc--cccccCCCCCCccccHHHHHHHHHHHHHHhcC
Confidence 11112333343333332222111111 111111 1111111100 0000 000000111 22455677888999999
Q ss_pred chhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhh
Q 016969 163 SLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFC 201 (379)
Q Consensus 163 ~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~ 201 (379)
-.......+|+||| +|+.+|+...++....+.|+..
T Consensus 216 ~e~~~~~aeE~knP---~r~iPrAi~~~~~~i~~~y~~~ 251 (456)
T PRK10238 216 LELVGITAAEADNP---EQSIPKATNQVIYRILIFYIGS 251 (456)
T ss_pred HHHHHHHHHhhcCh---hhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999997 3689999887777777777554
No 25
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=98.18 E-value=0.00013 Score=72.19 Aligned_cols=184 Identities=15% Similarity=0.069 Sum_probs=105.9
Q ss_pred ccCCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHH--HH
Q 016969 8 YFYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFG--AV 85 (379)
Q Consensus 8 ~~~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~--~i 85 (379)
+.+.-..-+-+++++||+...+......+.....+.++....++.+.+.+.. +.. .+.....++.. .+
T Consensus 58 ~p~~GG~y~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-------~~~~~~~~i~~~~~~ 127 (426)
T PF13520_consen 58 YPSAGGIYVWVSRAFGPFWGFIVGWLYWVAYILSLASVASSFASYLLSLFGP---DLN-------PSPWPQFLIAIILIL 127 (426)
T ss_dssp TTSSTTHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTG---GGT-------CSHHHHHHHHHHHHH
T ss_pred CCCcCeeeehhhhcccccchhcccceeEEEeeccccccccchhhhhhhcccc---ccc-------cccchheeeeecccc
Confidence 4555666677888999998888888888888877777777776665544321 000 00111121111 22
Q ss_pred HHHhccCCCCCchhHHHHHHHHHHHH-HHHHhhhheeeeeecCCcc--cccc-cccccCchhhHHHHHHHHhhhHHhhcC
Q 016969 86 QLILSQAPDFHNIQSLSVIAAVMSFA-YSFIGFGLGVAKVIGNGFV--MGSF-SGVSTTTSIEKMWLVAQALGDIAFAYP 161 (379)
Q Consensus 86 ~~pls~~r~l~~l~~~S~~~~~~~~~-~~~i~~~~~i~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~g~~~faf~ 161 (379)
..-..-.+..|..++++....+..++ ..++.+...+.....++.. +... ...| ...+ ..+.+++...|+|.
T Consensus 128 ~~~~l~~~g~~~~~~~~~~~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~ 202 (426)
T PF13520_consen 128 LFTLLNLLGIKLSGKIQNILTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFP--SGWP---GFLAGFSVAFFAFS 202 (426)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSC--SSSS---HHHHHHHHHGGGGT
T ss_pred cceEeeechhhhhhhhhhhhhhhhhhhhhhhheeEEEeeecccccccccccccccCC--cccc---chhhHHHHHHhhcc
Confidence 22333344555666655555444331 1112222222221111100 0000 0011 1111 25678888999999
Q ss_pred CchhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhcccccC
Q 016969 162 YSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGD 211 (379)
Q Consensus 162 ~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~ 211 (379)
|-.......+|+|| |+.+|+...++..+.++|......-....++
T Consensus 203 G~e~~~~~~~E~k~-----k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~ 247 (426)
T PF13520_consen 203 GFEAIASLAEENKN-----KTIPRAIIISIIIVAIIYILFSIALLGALPD 247 (426)
T ss_dssp TTTHHHHGGGGSSS-----HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTH
T ss_pred cccccccccccccc-----hhheeecccchhHHHHHHhhhhheeeecccc
Confidence 99999999999874 7899999999999999999987666655554
No 26
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=98.17 E-value=0.00051 Score=69.07 Aligned_cols=179 Identities=9% Similarity=0.033 Sum_probs=98.3
Q ss_pred CHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHH--HHHhc
Q 016969 13 DKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAV--QLILS 90 (379)
Q Consensus 13 sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i--~~pls 90 (379)
..-+-+++.+||+....+.............++.....+.+..+.+.. .+ + +.....+....+ ..-..
T Consensus 74 G~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~-~~----~-----~~~~~~~~~~~~~~~~~~l 143 (473)
T TIGR00905 74 GIYAYAREGFGPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLF-GS----G-----NPVPSILGASVLLWVFTFL 143 (473)
T ss_pred ChhhhHHhHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cC----C-----CcHHHHHHHHHHHHHHHHH
Confidence 344566899999999988888776655556666666666666665421 00 0 011111111111 12223
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchh-hHHHHHHHHhhhHHhhcCCchhHHHH
Q 016969 91 QAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSI-EKMWLVAQALGDIAFAYPYSLILIEI 169 (379)
Q Consensus 91 ~~r~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~faf~~~~~~~~i 169 (379)
-.+..|..+.+..+.....+...++.+...+... +.+.......+. ..+.. .....+..++....|+|.|-......
T Consensus 144 n~~Gi~~~~~i~~~~~~~~l~~l~~~ii~~~~~~-~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~ 221 (473)
T TIGR00905 144 VLRGVRQAAFINTITTIAKLIPLFLFIIIGWFWF-KLDLFTADFWGH-DVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVS 221 (473)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhcccccCcc-CCCcccchHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3445555555555444332221111111111111 111000000000 00111 12234667888899999999999999
Q ss_pred HhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhcc
Q 016969 170 QDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYA 207 (379)
Q Consensus 170 ~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~ 207 (379)
.+|+|| + |+.+|+...+..++.++|+........
T Consensus 222 a~E~k~-~---r~iPrai~~~~~i~~~~Yil~~~~~~~ 255 (473)
T TIGR00905 222 SGRAKN-K---SDVGKATVLGTLGALVIYILITLLSLG 255 (473)
T ss_pred HHHHhc-c---ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999996 2 789999999999999999887765443
No 27
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=98.14 E-value=0.00035 Score=70.15 Aligned_cols=59 Identities=10% Similarity=0.119 Sum_probs=48.5
Q ss_pred HHHHHhhhHHhhcCCchhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhccccc
Q 016969 148 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFG 210 (379)
Q Consensus 148 ~~~~~~g~~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG 210 (379)
++..++....|+|.|-.....+.+|.||+ |+.+|+...+...+.++|..+.+..+...+
T Consensus 196 ~~~~~~~~~~~~f~G~e~~~~~a~e~k~~----k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~ 254 (468)
T TIGR03810 196 QVKNMMLVTVWVFIGIEGASMLSARAEKR----SDVGKATVIGLIGVLAIYVLVSVLSYGIMT 254 (468)
T ss_pred HHHHHHHHHHHHHHhHhHHhhhHhhccCc----ccchHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 45578888999999998888888888853 789999999999999999988876654444
No 28
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=98.13 E-value=0.00093 Score=67.24 Aligned_cols=176 Identities=10% Similarity=0.059 Sum_probs=97.3
Q ss_pred CCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHHhcc
Q 016969 12 PDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQ 91 (379)
Q Consensus 12 ~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~ 91 (379)
-.|.+-+++.+|+.....+.....+.....+.+.....+..+....+ ..+...|..+... ++-+.-
T Consensus 68 G~~~~~~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~-~~~~in 133 (478)
T TIGR00913 68 GSFATYASRFVDPAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTD-------------KVNPAVWIAIFYV-FIVIIN 133 (478)
T ss_pred CCHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------------CCCHHHHHHHHHH-HHHHHH
Confidence 36888899999999998888888777766666666666555432211 0112223322211 111223
Q ss_pred CCCCCchhHHHHHHHHHHHHHH--HHhhhheeeeeec-CCc-ccc----cccccccCchhhHHHHHHHHhhhHHhhcCCc
Q 016969 92 APDFHNIQSLSVIAAVMSFAYS--FIGFGLGVAKVIG-NGF-VMG----SFSGVSTTTSIEKMWLVAQALGDIAFAYPYS 163 (379)
Q Consensus 92 ~r~l~~l~~~S~~~~~~~~~~~--~i~~~~~i~~~~~-~~~-~~~----~~~~~~~~~~~~~~~~~~~~~g~~~faf~~~ 163 (379)
.+..|..+.++.+.+..-+... ++++++....... +.. ... ...++++........++..++....|+|.|-
T Consensus 134 ~~gv~~~~~~~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~ 213 (478)
T TIGR00913 134 LFGVKGYGEAEFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGT 213 (478)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccH
Confidence 3445555444433321111100 1111111111100 000 000 0011110000112445777888899999999
Q ss_pred hhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhh
Q 016969 164 LILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF 204 (379)
Q Consensus 164 ~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~ 204 (379)
......-+|+||| +|+.+|++..+...+.++|....+.
T Consensus 214 e~~~~~a~E~knP---~r~iPrai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 214 ELVALTAGEAANP---RKSIPRAAKRTFWRILVFYILTLFL 251 (478)
T ss_pred HHHHHHHHhhcCh---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999997 3789999999999999999987543
No 29
>PRK15049 L-asparagine permease; Provisional
Probab=98.11 E-value=0.00051 Score=69.54 Aligned_cols=58 Identities=16% Similarity=0.125 Sum_probs=46.2
Q ss_pred HHHHHhhhHHhhcCCchhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhccc
Q 016969 148 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAA 208 (379)
Q Consensus 148 ~~~~~~g~~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~ 208 (379)
..+.++....|+|.|-......-+|+||| +|+.+|++..++..+.++|+.....-...
T Consensus 221 ~~~~~~~~~~faf~G~e~i~~~aeE~knP---~r~iPrAi~~~~~~i~~~yi~~~~~~~~~ 278 (499)
T PRK15049 221 PALVLIQGVVFAFASIEMVGTAAGECKDP---QTMVPKAINSVIWRIGLFYVGSVVLLVML 278 (499)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhcCh---hhHHHHHHHHHHHHHHHHHHHHHHHHhee
Confidence 35566778899999999999999999998 36799999988888888887765544333
No 30
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=98.08 E-value=0.00098 Score=66.96 Aligned_cols=56 Identities=16% Similarity=0.138 Sum_probs=46.1
Q ss_pred HHHHHhhhHHhhcCCchhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhc
Q 016969 148 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGY 206 (379)
Q Consensus 148 ~~~~~~g~~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY 206 (379)
++..++....|+|.|-......-+|+||| +|+.+|+...+...+.+.|......-+
T Consensus 212 ~~~~~~~~~~~af~G~e~~~~~a~E~knP---~r~iPrai~~~~~~~~~~y~l~~~~~~ 267 (469)
T PRK11049 212 GFFAGFQIAVFAFVGIELVGTTAAETKDP---EKSLPRAINSIPIRIIMFYVFALIVIM 267 (469)
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHhcCH---hhHHHHHHHHHHHHHHHHHHHHHHHHe
Confidence 47788999999999999999999999997 368999887777777888876665543
No 31
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=98.07 E-value=0.00025 Score=70.64 Aligned_cols=56 Identities=14% Similarity=0.207 Sum_probs=48.4
Q ss_pred HHHHHHhhhHHhhcCCchhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhh
Q 016969 147 WLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFG 205 (379)
Q Consensus 147 ~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~G 205 (379)
.++..++....|+|.|-.......+|+||| +|+.+|++..++.++.++|......-
T Consensus 195 ~~~~~~~~~~~~af~G~e~~~~~a~E~k~P---~r~iP~Ai~~~~~i~~~~Y~l~~~~~ 250 (445)
T PRK11357 195 MALLAGISATSWSYTGMASICYMTGEIKNP---GKTMPRALIGSCLLVLVLYTLLALVI 250 (445)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhhHHHhcCc---cccchHHHHHHHHHHHHHHHHHHHHH
Confidence 456778889999999999999999999998 37899999999999999998876543
No 32
>PRK10580 proY putative proline-specific permease; Provisional
Probab=98.04 E-value=0.00059 Score=68.27 Aligned_cols=54 Identities=19% Similarity=0.157 Sum_probs=44.3
Q ss_pred HHHHHhhhHHhhcCCchhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhh
Q 016969 148 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF 204 (379)
Q Consensus 148 ~~~~~~g~~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~ 204 (379)
+...++....|+|.|-.......+|+||| +|+.+|+...+...+.++|......
T Consensus 200 ~~~~~~~~~~fsf~G~e~~~~~a~E~knP---~k~iPrAi~~~~~~~~~~y~~~~~~ 253 (457)
T PRK10580 200 GMVMSLQMVMFAYGGIEIIGITAGEAKDP---EKSIPRAINSVPMRILVFYVGTLFV 253 (457)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHhcCh---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778889999999999999999999998 3678998887777777777666443
No 33
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=98.04 E-value=0.00062 Score=68.03 Aligned_cols=183 Identities=11% Similarity=0.023 Sum_probs=98.4
Q ss_pred cccCCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHH-
Q 016969 7 FYFYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAV- 85 (379)
Q Consensus 7 ~~~~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i- 85 (379)
.+...-...+-+++.+|++...++...........+.+.....++.++.+.+. . ..|.....++
T Consensus 71 ~~P~~Gg~~~~~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~--~~~~~~~~~~~ 135 (452)
T TIGR01773 71 ANPDTGSFSTYADDAIGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPD-------------I--PLWLFSLILTI 135 (452)
T ss_pred hcCCCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------------C--cHHHHHHHHHH
Confidence 34455567788899999999889888887777666666666666655543311 1 1232211111
Q ss_pred HHHhccCCCCCchhHHHHHHHHHHHHHH--HHhhhhe-eeeeecCCccccccccccc-CchhhH-HHHHHHHhhhHHhhc
Q 016969 86 QLILSQAPDFHNIQSLSVIAAVMSFAYS--FIGFGLG-VAKVIGNGFVMGSFSGVST-TTSIEK-MWLVAQALGDIAFAY 160 (379)
Q Consensus 86 ~~pls~~r~l~~l~~~S~~~~~~~~~~~--~i~~~~~-i~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~g~~~faf 160 (379)
+.-..-.+..|..+.+.....+.-+... +++++.. ......... ........+ ....++ ..++..++....|+|
T Consensus 136 ~~~~~n~~gv~~~~~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af 214 (452)
T TIGR01773 136 VLTLTNLYSVKSYGEFEFWFALIKVIAIIAFIILGAVAIFGFAPGSE-VSGFSNLTGKGGFFPNGIGAVLLAILVTMFSF 214 (452)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-CCccccccCCCCcCcccHHHHHHHHHHHHHHh
Confidence 1112222334444433333222111111 1111111 111110000 000000000 001112 234778899999999
Q ss_pred CCchhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhccc
Q 016969 161 PYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAA 208 (379)
Q Consensus 161 ~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~ 208 (379)
.|-......-+|+||| +|+.+|+...++.....+|+...+.....
T Consensus 215 ~G~e~~~~~a~E~k~P---~r~iPrAi~~~~~~~~~~y~l~~~~~~~~ 259 (452)
T TIGR01773 215 MGTEIVTIAAAESSNP---IKSITRATNSVIWRIIVFYLGSIFIVVAL 259 (452)
T ss_pred ccHHHHhHHHHhhcCh---hhHHHHHHHHHHHHHHHHHHHHHHHHeeE
Confidence 9999999999999997 36899998888888888888765544333
No 34
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=98.02 E-value=0.00062 Score=68.46 Aligned_cols=53 Identities=9% Similarity=0.042 Sum_probs=42.9
Q ss_pred hHHhhcCCchhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhccccc
Q 016969 155 DIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFG 210 (379)
Q Consensus 155 ~~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG 210 (379)
.+.|+|.|-......-+|+||| +|+.+|+...+...+.++|....+.-...-+
T Consensus 202 ~~~~af~G~e~~~~~a~E~knP---~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKDVDNP---DKNYPIAILIAALGTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred HHHHHHhchhHhHHHHHhccCc---ccchhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4578999999999999999998 3789999999999999999876554433333
No 35
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=98.01 E-value=0.00033 Score=68.06 Aligned_cols=187 Identities=14% Similarity=0.107 Sum_probs=119.4
Q ss_pred cCCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHH--H
Q 016969 9 FYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAV--Q 86 (379)
Q Consensus 9 ~~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i--~ 86 (379)
....|+.|.+++.+|++..+++...=..+-.-++++-+.-++..++..++. .+++.+.+....+ .
T Consensus 74 p~~gSF~~~a~~~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~-------------vP~Wv~al~~~~l~~~ 140 (462)
T COG1113 74 PVSGSFSDYARKYLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPD-------------VPQWVFALAAVVLLLA 140 (462)
T ss_pred CCCCcHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------CcHHHHHHHHHHHHHH
Confidence 356789999999999999999999999999999999999888887777642 2233333333222 2
Q ss_pred HHhccCCCCCchh-HHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCch-----hhHHHHHHHHhhhHHhhc
Q 016969 87 LILSQAPDFHNIQ-SLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTS-----IEKMWLVAQALGDIAFAY 160 (379)
Q Consensus 87 ~pls~~r~l~~l~-~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~g~~~faf 160 (379)
+=+...|...++. |++++=.+..+.+.++.+++ +..+..++.. ..+++...+ +....+++.++-+.+|||
T Consensus 141 ~NL~sVk~FGE~EfWfAlIKV~aIi~~Iv~G~~l-l~~g~~~~~~---~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf 216 (462)
T COG1113 141 VNLISVKVFGELEFWFALIKVAAIIAFIVVGIVL-LFGGFGGGGG---AAGFSNLWDHGGFFPNGFLGFLSALQIVMFAF 216 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhccCCCCC---CccccccccCCCcCCCchHHHHHHHHHHHHHH
Confidence 3455667777665 55655544333322222222 2233333321 122221111 122345788999999999
Q ss_pred CCchhHHHHHhHhCCCCCchhhhhhhhH-----HHHHHHHHHHhhhhhhhcccccCcccc
Q 016969 161 PYSLILIEIQDTLKSPPPANQTMKKAST-----MSIITTTIFYLFCGGFGYAAFGDNTPG 215 (379)
Q Consensus 161 ~~~~~~~~i~~~M~~p~p~~~~~~~~~~-----~s~~~~~~~Y~~~g~~GY~~fG~~v~~ 215 (379)
++...+=---.|-|||+ |..+|+.+ ....-...+.....+.-+-.++++.++
T Consensus 217 ~GiElvGitA~Et~dP~---k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SP 273 (462)
T COG1113 217 GGIELVGITAAEAKDPE---KAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSP 273 (462)
T ss_pred hhHHHHHHHHHhhcChh---hHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCc
Confidence 99998877789999983 55666554 444555566678888888888775444
No 36
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=98.01 E-value=0.0011 Score=66.05 Aligned_cols=54 Identities=20% Similarity=0.209 Sum_probs=47.1
Q ss_pred HHHHHhhhHHhhcCCchhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhh
Q 016969 148 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF 204 (379)
Q Consensus 148 ~~~~~~g~~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~ 204 (379)
++..++....|+|.|-.......+|+||| +|+.+|+...++..+.++|+...+.
T Consensus 182 ~~~~a~~~~~faf~G~e~~~~~a~E~knP---~r~iPrai~~~~~~i~i~Yil~~~~ 235 (446)
T PRK10197 182 AVLSAMLITMFSFMGAEIVTIAAAESDTP---EKHIVRATNSVIWRISIFYLCSIFV 235 (446)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHhcCh---hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999998 3789999988888888889876554
No 37
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=98.01 E-value=0.00071 Score=69.39 Aligned_cols=179 Identities=9% Similarity=-0.001 Sum_probs=97.8
Q ss_pred hhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhcccc-C---CCCccccccCc-hhhHHHHHHHHHhccCC
Q 016969 19 HGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHR-E---GHEAACEYSDT-YYMLIFGAVQLILSQAP 93 (379)
Q Consensus 19 ~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~-~---~~~~~~~~~~~-~~~~i~~~i~~pls~~r 93 (379)
++++|+...+++.....+.....+.+.....++.+..++....... . +.+.+ ..... .+..+..++++-....+
T Consensus 100 ~~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~-~l~~~~~~~a~~ii~l~~~ln~~ 178 (557)
T TIGR00906 100 YVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYD-GLAEYPDFFAVCLILLLAVLLSF 178 (557)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCC-cccccchHHHHHHHHHHHHHHHh
Confidence 4668998888888888776665555555555666666553200000 0 00000 01111 11111112222233446
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccc---cccccCchhhHHHHHHHHhhhHHhhcCCchhHHHHH
Q 016969 94 DFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSF---SGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQ 170 (379)
Q Consensus 94 ~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~~~~i~ 170 (379)
..|..++++.+..+..+...++.++.++.....+ +.+. .+.++..+ ....+.+.+.....|+|.|-......-
T Consensus 179 Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~---~~~~~~~~~~~~f~p-~g~~g~l~g~~~~~faf~Gfd~v~~~a 254 (557)
T TIGR00906 179 GVKESAWVNKIFTAINILVLLFVIIAGFTKADVA---NWSITEEKGAGGFMP-YGFTGVLSGAATCFFAFIGFDAIATTG 254 (557)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCch---hccccccccCCCCCC-cchHHHHHHHHHHHHHHhhHHHHHHhH
Confidence 6777766666554433322222222222221111 1110 00000011 122357788889999999999999999
Q ss_pred hHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhh
Q 016969 171 DTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFG 205 (379)
Q Consensus 171 ~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~G 205 (379)
+|+||| +|+.+++...++.++.++|..+.+.-
T Consensus 255 eE~knP---~r~iP~aii~sl~i~~vlY~lv~~~l 286 (557)
T TIGR00906 255 EEVKNP---QRAIPIGIVTSLLVCFVAYFLMSAAL 286 (557)
T ss_pred HhccCc---cccccHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 36899999999999999998876543
No 38
>PRK11387 S-methylmethionine transporter; Provisional
Probab=97.99 E-value=0.0011 Score=66.76 Aligned_cols=56 Identities=13% Similarity=0.124 Sum_probs=47.4
Q ss_pred HHHHHHhhhHHhhcCCchhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhh
Q 016969 147 WLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFG 205 (379)
Q Consensus 147 ~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~G 205 (379)
.++..++....|+|.|-......-+|+||| +|+.+|+...+...+.++|+...+.-
T Consensus 206 ~~~~~~~~~~~faf~G~e~~~~~a~E~knP---~r~iPrAi~~~~~~~~~~y~~~~~~~ 261 (471)
T PRK11387 206 LPILMTMVAVNFAFSGTELIGIAAGETENP---AKVIPVAIRTTIARLVIFFVGTVLVL 261 (471)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHhcCh---hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778899999999999999999998 37899999999998899998876543
No 39
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=97.94 E-value=0.0024 Score=64.33 Aligned_cols=51 Identities=8% Similarity=0.012 Sum_probs=39.6
Q ss_pred HHHHHHhhhHHhhcCCchhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhh
Q 016969 147 WLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLF 200 (379)
Q Consensus 147 ~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~ 200 (379)
+....++....|+|.|-......-+|+||| +|+.+|++..+..++.+++..
T Consensus 217 ~~~~~~~~~~~fsf~G~e~~~~~a~E~knP---~r~iP~Ai~~s~~i~~~~~~~ 267 (482)
T TIGR00907 217 FAFLLGLLNPAWSMTGYDGTAHMAEEIENP---EVVGPRAIIGAVAIGIVTGFC 267 (482)
T ss_pred hhhhhhhhhhHHHhcCcchhhHHHHhcCCh---hhhcCHHHHHHHHHHHHHHHH
Confidence 345555666779999999999999999998 378999998888776654433
No 40
>TIGR00930 2a30 K-Cl cotransporter.
Probab=97.88 E-value=0.0062 Score=66.05 Aligned_cols=179 Identities=15% Similarity=0.041 Sum_probs=95.0
Q ss_pred HhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHHhccCCCCC
Q 016969 17 ASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFH 96 (379)
Q Consensus 17 l~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~ 96 (379)
..++++|+.....+.++....+..++..|.+-+++.+..+++...... . .++ ....+.+.++..++ +-+...+..+
T Consensus 148 yisralGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~-~-~~~-~~~~~iia~i~l~l-l~~In~~Gvk 223 (953)
T TIGR00930 148 LISRSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKI-M-VDP-INDIRIYGTVTVVV-LLGISFAGME 223 (953)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc-c-cCc-cccchHHHHHHHHH-HHHHHHhhHH
Confidence 346778888888888888888888888999999999888775311000 0 000 00112121111111 1112222334
Q ss_pred chhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccc-----c--CchhhHHHH-HHHHhhhHHhhcCCchhHHH
Q 016969 97 NIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVS-----T--TTSIEKMWL-VAQALGDIAFAYPYSLILIE 168 (379)
Q Consensus 97 ~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~-~~~~~g~~~faf~~~~~~~~ 168 (379)
..+.+..+-++..++.++..++..+......+. ....++. + .+..+...+ ++..++++.+||.|-.....
T Consensus 224 ~~ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~--~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan 301 (953)
T TIGR00930 224 WENKAQVLFLVIVLLSILNIFVGTIIPAFDKPA--KGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGAN 301 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeeecCCCCCc--cceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 333333332222111111111111111000000 0000000 0 001111112 56677888889999888889
Q ss_pred HHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhh
Q 016969 169 IQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF 204 (379)
Q Consensus 169 i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~ 204 (379)
+-.|+||| +++.+++...++.+++++|+++.+.
T Consensus 302 ~sgElKnP---~r~IPratl~ai~i~~vlYllv~~~ 334 (953)
T TIGR00930 302 ISGDLKDP---QKAIPKGTLLAILTTTVVYLGSVVL 334 (953)
T ss_pred HHHhccCh---hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998 3789999999999999999998763
No 41
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.79 E-value=0.00099 Score=65.66 Aligned_cols=290 Identities=14% Similarity=0.091 Sum_probs=143.3
Q ss_pred hhhcCcCcchhhHHHHH-HHHhhhhheehhhhhhh-HHHHHHhhccccCCCCccccccCchhhHHHHHHHHHhccCCCCC
Q 016969 19 HGFSGKTNAWACSFFVH-VGLYGTAIAYTVTSAIS-MRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFH 96 (379)
Q Consensus 19 ~~~~G~~~~~~~~i~~~-~~~~g~~v~yli~~~~~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~ 96 (379)
.++||+.........-. +..-..+..+-+.+++. ++..++ . |..++. ..-..+..++-+...+|..
T Consensus 85 ~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp-~----------c~~p~~-~~~lla~~~l~~lt~~n~~ 152 (479)
T KOG1287|consen 85 SEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFP-L----------CDVPRV-ASKLLAAALLVLLTLINSF 152 (479)
T ss_pred HHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCC-C----------CCCchH-HHHHHHHHHHHHHHHHhhh
Confidence 35677754433333333 33333435566666665 444433 1 222222 2223344444444555777
Q ss_pred chhHHHHHHHHHHHH---HHHHhhhheeeeeecCCcccccccccccCchhhHHHHHHHHhhhHHhhcCCchhHHHHHhHh
Q 016969 97 NIQSLSVIAAVMSFA---YSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTL 173 (379)
Q Consensus 97 ~l~~~S~~~~~~~~~---~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~~~~i~~~M 173 (379)
.+++.+.+-.++++. .+.++++..++....+..++.+..+.. ....+.-+...++=.-.|||.|=..+=-+-+|+
T Consensus 153 ~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~--g~~~~~g~i~lafysglfa~~GWd~lN~vteEi 230 (479)
T KOG1287|consen 153 SVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFE--GSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEI 230 (479)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccc--cCcCchHHHHHHHHHhhhcccCchhhccchHhh
Confidence 777666655554432 222223333443322221111000011 011122235666777788999988777788999
Q ss_pred CCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhcccccCccccccccc------cCCC-CChHHHHHHHHHHHHHHHHhhc
Q 016969 174 KSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTG------FGFY-EPYWLIDLANAFIVIHLVGGYQ 246 (379)
Q Consensus 174 ~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~v~~~il~n------~~~~-~~~~~~~~~~~~~~i~~~~syp 246 (379)
||| +|+++++...|+.++++.|+.+-+..+-+-- .++++.+ +.+. .+.+. -..-+++.++.+++.-
T Consensus 231 knP---~ktLP~Ai~isi~lvt~iYil~NvAy~~vls---~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n 303 (479)
T KOG1287|consen 231 KNP---RRTLPRAILISIPLVTVIYVLVNVAYFTVLS---PDEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIGSLN 303 (479)
T ss_pred cCc---cccchHHHHHhhHHHHHHHHHhHhheeEecC---HHHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhhhhh
Confidence 998 3789999999999999999999886665443 2233222 1100 01111 2233344444444432
Q ss_pred ccccchHHHHHHHHHh-hCCCCCCCCcccccCCCCCCcCCCchhHHHHHHHHHHHHHHHHHHccChHHHHHHHhhhhhhh
Q 016969 247 VYSQPIFAHFEKWICE-KFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWP 325 (379)
Q Consensus 247 l~~~p~~~~ie~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~l~~vl~lvGs~~~~~ 325 (379)
-.++.....+...-.+ ..|+. +..+ + .+.+.-+ ...++.....++..++.|++.+++.++=.-...
T Consensus 304 ~~ifs~SR~~~~~areG~LP~~-~s~i-~---------~~~~TP~--~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~ 370 (479)
T KOG1287|consen 304 SVIFSSSRLFYAGAREGHLPAF-FSMI-S---------VRRFTPR--PALLFSGLLSIVLSLIGDFDQLINYVSFAYWLF 370 (479)
T ss_pred hHHHHHHHHHHHHHHccCccHH-HHhh-c---------CCCCCCh--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 1111111111111100 01110 0000 0 0000111 112233444555566779999999998877777
Q ss_pred hHhhhhhHHHHHhcCcc
Q 016969 326 LTIYFPVEMYFKQMNIE 342 (379)
Q Consensus 326 l~fi~P~l~y~~~~~~~ 342 (379)
..+.+=+++++|.++++
T Consensus 371 ~~l~~~gll~lR~k~p~ 387 (479)
T KOG1287|consen 371 RGLSMAGLLWLRWKHPP 387 (479)
T ss_pred HHHHHHHHHHHHhhCCC
Confidence 88888889999976544
No 42
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=97.71 E-value=0.0031 Score=63.91 Aligned_cols=58 Identities=19% Similarity=0.133 Sum_probs=49.6
Q ss_pred HHHHHHHhhhHHhhcCCchhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhc
Q 016969 146 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGY 206 (379)
Q Consensus 146 ~~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY 206 (379)
..++..++....|+|.|-.......+|+||| +|+.+|+...+...+.++|+...+.-.
T Consensus 234 ~~~~~~a~~~~~~af~G~e~~~~~a~E~knP---~r~iPrAi~~s~~~v~~~Y~l~~~a~~ 291 (501)
T TIGR00911 234 AGGIVLAFYSGIWAYGGWNYLNFVTEEVKNP---YRTLPIAIIISMPIVTFIYVLTNIAYF 291 (501)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhhHHHhcCc---hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778889999999999999999999997 378999999999999999999865443
No 43
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=97.69 E-value=0.002 Score=65.29 Aligned_cols=51 Identities=14% Similarity=0.025 Sum_probs=41.2
Q ss_pred HHHhhhHHhhcCCchhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhh
Q 016969 150 AQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGG 203 (379)
Q Consensus 150 ~~~~g~~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~ 203 (379)
...+..+.|+|.|-......-+|+||| +|+++|++..++.++.++|....+
T Consensus 197 ~~~~~~~~faf~G~E~~a~~a~E~knP---~r~~PrAi~~~~i~~~~l~~l~~~ 247 (507)
T TIGR00910 197 LVVFVAFIGAYMGVEASASHINELENP---GRDYPLAMILLMIAAICLDAIGGF 247 (507)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHccCC---cccccHHHHHHHHHHHHHHHHHHH
Confidence 334445689999999999999999998 378999999998888888876443
No 44
>PRK10836 lysine transporter; Provisional
Probab=97.48 E-value=0.023 Score=57.42 Aligned_cols=54 Identities=11% Similarity=0.153 Sum_probs=44.7
Q ss_pred HHHHhhhHHhhcCCchhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhh
Q 016969 149 VAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFG 205 (379)
Q Consensus 149 ~~~~~g~~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~G 205 (379)
.........|+|.|-......-+|+||| +|+.+|+...++..+.++|......-
T Consensus 207 ~~~~~~~~~faf~G~e~~~~~a~E~knP---~r~iPrAi~~~~~~v~~~Yvl~~~~~ 260 (489)
T PRK10836 207 MIGVAMIVGFSFQGTELIGIAAGESEDP---AKNIPRAVRQVFWRILLFYVFAILII 260 (489)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555679999999999999999998 37899999999999999998776543
No 45
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=97.44 E-value=0.013 Score=56.60 Aligned_cols=176 Identities=12% Similarity=0.088 Sum_probs=101.2
Q ss_pred CCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHH-HHHHHHHh
Q 016969 11 LPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLI-FGAVQLIL 89 (379)
Q Consensus 11 ~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i-~~~i~~pl 89 (379)
..+..|..++++||+...+..+....+.+..+..-.-..+|.++... .+ + ...|.+. ...+..-.
T Consensus 63 ~~~~~~~~~~~~Gk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~----~------tp~~~~~l~~l~~~~~ 128 (359)
T TIGR00912 63 EKNFSEILSKYLGKILGRLLSILFILYFFLIAAYLIRIFADFIKTYL----LP----R------TPIIVIIILIIIVSIY 128 (359)
T ss_pred CCCHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cC----C------CCHHHHHHHHHHHHHH
Confidence 45899999999999988888877777766666555555555544322 11 0 1123221 11212222
Q ss_pred ccCCCCCchhHHHHHHHHHHHHH-HHHhhhheeeeeecCCcccccccccccCchhhHHHHHHHH-hhhHHhhcCCchhHH
Q 016969 90 SQAPDFHNIQSLSVIAAVMSFAY-SFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQA-LGDIAFAYPYSLILI 167 (379)
Q Consensus 90 s~~r~l~~l~~~S~~~~~~~~~~-~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~faf~~~~~~~ 167 (379)
...+.++....++.+-....+.. .++.......+ .+. + ...+ .. .....+...+ .....++|.+.....
T Consensus 129 ~~~~Gi~~i~r~~~i~~~~~i~~~~~il~~~~~~~---~~~-~-~l~P---~~-~~g~~~~~~~~~~~~~~~f~g~~i~~ 199 (359)
T TIGR00912 129 IVRKGIEVLLRTAEILLIIFLILFILVLILLAPKL---GNI-K-NLLP---VL-ENGLSPILKGAYPVVTFAFGEIEIFF 199 (359)
T ss_pred HHHccHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---ccH-H-HccC---cc-ccCcHHHHhhhhHHhhhhhHHHHHHH
Confidence 23356777777666554432222 11111111111 000 0 0110 00 1111233333 346778888877777
Q ss_pred HHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhcccccCcc
Q 016969 168 EIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT 213 (379)
Q Consensus 168 ~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~v 213 (379)
....++||| ||.+|+...+...+..+|...-+..-..+|.+.
T Consensus 200 ~~~~~~~~~----~~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~ 241 (359)
T TIGR00912 200 LLFPLLSKK----KKIKKSIIKAIIIGVLLYILTTFVSISVFGGNV 241 (359)
T ss_pred HHHHHhCCh----hhhHHHHHHHHHHHHHHHHHHHHHHHheecHHH
Confidence 788888875 788999999999999999998888888888643
No 46
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=97.40 E-value=0.022 Score=56.81 Aligned_cols=186 Identities=12% Similarity=0.085 Sum_probs=110.3
Q ss_pred CCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHH--HH
Q 016969 11 LPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQ--LI 88 (379)
Q Consensus 11 ~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~--~p 88 (379)
.-.+-+-+++.+|++...++.............+.....+..+..+.+.. . .. ..+...+..+..++. +-
T Consensus 75 ~GG~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~----~~~~~~~~~~~~~~~~~~~ 146 (466)
T COG0531 75 AGGAYAYAKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGP--G--LL----SIGPLLIILIALALIALLT 146 (466)
T ss_pred CCCeeeehhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc--h--hh----cCCchHHHHHHHHHHHHHH
Confidence 33455667889998888888888888888888888888877666665420 0 00 001112222222222 22
Q ss_pred hccCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhhHHHHHHHHhhhHHhhcCCchhHHH
Q 016969 89 LSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIE 168 (379)
Q Consensus 89 ls~~r~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~~~~ 168 (379)
+.-.+..|.......+..+..+...++.....+.....++ .+ ...... +......+...+++...++|.|-....+
T Consensus 147 ~ln~~G~~~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~-~~-~~~~~~--~~~~~~~~~~~~~~~~~~~f~G~e~~~~ 222 (466)
T COG0531 147 LLNLRGIKASAKINSIITILKIIILLIFIILGLFAFGFSN-GN-LFAPFN--PGGGSFGGILAAILLAFFAFTGFEAIAT 222 (466)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-cc-cCCCcc--cccchHHHHHHHHHHHHHHhhcHHHHHH
Confidence 3333455555555555444333322222222222221111 00 001000 0111222477888999999999999999
Q ss_pred HHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhcccccC
Q 016969 169 IQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGD 211 (379)
Q Consensus 169 i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~ 211 (379)
.-+|+||| +|+.+|+...++..+..+|....+.-....++
T Consensus 223 ~a~E~knp---~r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 223 LAEEVKNP---KRTIPRAIILSLLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred HHHHhcCc---cccccHHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence 99999997 26689999999999999999988877777775
No 47
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=97.39 E-value=0.18 Score=50.72 Aligned_cols=54 Identities=7% Similarity=-0.172 Sum_probs=41.9
Q ss_pred HHHHHhhhHHhhcCCchhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhh
Q 016969 148 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF 204 (379)
Q Consensus 148 ~~~~~~g~~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~ 204 (379)
.+..+.....|+|.|-......-+|+||| +|+.+|++..+..+...+|...-+.
T Consensus 214 ~~~~~~~~~~~~f~G~e~~~~~aeE~knP---~r~iPrai~~s~~i~~~~~~~~~~~ 267 (475)
T TIGR03428 214 AFLVSGLMAAYVMVGFGSAGELSEETKNP---RRVAPRTILTALSVSALGGGLMILG 267 (475)
T ss_pred HHHHHHHHHHHHhcCcchHHHHHHHhcCc---chhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34556666789999999999999999998 3789999999888776655544443
No 48
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=97.01 E-value=0.1 Score=52.89 Aligned_cols=54 Identities=19% Similarity=0.130 Sum_probs=45.8
Q ss_pred HHHHHhhhHHhhcCCchhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhh
Q 016969 148 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF 204 (379)
Q Consensus 148 ~~~~~~g~~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~ 204 (379)
+...++....|+|.|-......-+|+||| +|+.+|+...+...+..+|....+.
T Consensus 212 ~~~~~~~~~~~~f~G~e~~~~~a~E~~~p---~~~~p~ai~~~~~~~~~~y~l~~~~ 265 (496)
T PRK15238 212 AVLSFVVFAIFAYGGIEAVGGLVDKTENP---EKNFPKGIIIAAIVISIGYSLAIFL 265 (496)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhccCC---CccccHHHHHHHHHHHHHHHHHHHH
Confidence 45667777899999999999999999998 3789999999999999999876443
No 49
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=96.92 E-value=0.032 Score=55.65 Aligned_cols=197 Identities=16% Similarity=0.051 Sum_probs=104.6
Q ss_pred ccccCCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCc--hhhHHHH
Q 016969 6 PFYFYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDT--YYMLIFG 83 (379)
Q Consensus 6 ~~~~~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~--~~~~i~~ 83 (379)
...|...++.-+.|..||.+|..+..++..+..+|=...-....++.+..+++....+. .+ .+-+++.. ...+++.
T Consensus 70 ~G~r~Gl~~~v~sR~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~-~~-~~~~~t~~~~~~~~i~~ 147 (442)
T TIGR00800 70 AGAKYGLPFPVLSRASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGY-LH-LGNGMTTLELICFIIFW 147 (442)
T ss_pred hHHHhCCCcchhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccc-cc-cCCcccHHHHHHHHHHH
Confidence 45667778889999999999999999999999999999999999999888886532110 00 00000111 1223444
Q ss_pred HHHHHhccCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccc-cCchhhHHHHHHHHhhhHH-hhcC
Q 016969 84 AVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVS-TTTSIEKMWLVAQALGDIA-FAYP 161 (379)
Q Consensus 84 ~i~~pls~~r~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~-faf~ 161 (379)
.+.+++......+-.+.....+....+....+ ....+.+.....+ ....+ +.+.....+++..++...+ +.-.
T Consensus 148 ~l~~~~~~~~g~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~g~~~----~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s 222 (442)
T TIGR00800 148 ALVLVFLFFFGYKIRHLFEWLAVVPPFAAFGM-LIWALSKAHGKGP----LGELTGTLHGSTGAWAFLYALSLVIGSFAT 222 (442)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCCCc----cccCCCCCCcchhHHHHHHHHHHHHHHHHH
Confidence 55556555544444444444443221111111 1111111110000 00010 0011223344554444432 2223
Q ss_pred CchhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhccc----ccCcc
Q 016969 162 YSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAA----FGDNT 213 (379)
Q Consensus 162 ~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~----fG~~v 213 (379)
.-.+.++..+-+|+| ++-.+....++.........+|+.+-.. +|+..
T Consensus 223 ~~~~~~DysRy~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~ 274 (442)
T TIGR00800 223 WATNAPDFTRFGKSK----KTAIWGQFLALPGGFTLTCFFGILGAAAAYAAYGEPY 274 (442)
T ss_pred HHcCchhhhhhcCCc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 344778888889875 3333335556666666666666666655 77653
No 50
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=96.72 E-value=0.12 Score=50.60 Aligned_cols=181 Identities=11% Similarity=0.036 Sum_probs=100.6
Q ss_pred ccccCCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHH
Q 016969 6 PFYFYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAV 85 (379)
Q Consensus 6 ~~~~~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i 85 (379)
+++|...++.-+.|..||++|..+..+...+...|=-.......++.++.+.+... +.+ +...+..+.+++
T Consensus 52 ~G~~~Gl~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~----~~~-----~~~~~~~i~~~l 122 (386)
T TIGR02358 52 IGADTGLSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLF----GEE-----SPMLWILIVGIL 122 (386)
T ss_pred hhcccCcCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCC-----chHHHHHHHHHH
Confidence 46677788999999999999999999999999999999999999999999885321 110 112344444444
Q ss_pred HHHhccCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhhHHHHHHHHhhhHH-hhcCCch
Q 016969 86 QLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIA-FAYPYSL 164 (379)
Q Consensus 86 ~~pls~~r~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-faf~~~~ 164 (379)
..+.+.. -.|.++++..++........+........+. + ... .... +.. .++..++...+ +.-....
T Consensus 123 ~~~~~~~-G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~---~-~~~-~~~~---~~~---~s~~~~~~~~~~~~~swa~ 190 (386)
T TIGR02358 123 VTLWLLS-GPLAFVWLNNWSVWLLLIATLWLLVVVFSKA---D-LSE-LWNR---AGD---MSFAVAVELVIAMPLSWLP 190 (386)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---c-hhh-hcCC---CCC---ccHHHHHHHHHHHHHHHHH
Confidence 4555443 4455666666555432221111111111111 1 000 0110 111 11111221111 1011223
Q ss_pred hHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhcccccC
Q 016969 165 ILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGD 211 (379)
Q Consensus 165 ~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~ 211 (379)
..++..+-.|+| +|.......+..+...+-..+|...-.+.|+
T Consensus 191 ~~~DysRy~k~~----~~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~ 233 (386)
T TIGR02358 191 LIADYTRFARNP----RHVFLGTVLGYFIGSCWMYFLGLAVTLATGQ 233 (386)
T ss_pred HccchhhhcCCC----cceehHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 367777777754 5555555666677777777777766666655
No 51
>PRK11375 allantoin permease; Provisional
Probab=96.61 E-value=0.26 Score=49.68 Aligned_cols=54 Identities=6% Similarity=-0.199 Sum_probs=43.2
Q ss_pred ccccCCCCHHhHhhhhcCcCcchhhHHHHH-HHHhhhhheehhhhhhhHHHHHHh
Q 016969 6 PFYFYLPDKFDASHGFSGKTNAWACSFFVH-VGLYGTAIAYTVTSAISMRAIQKS 59 (379)
Q Consensus 6 ~~~~~~~sY~dl~~~~~G~~~~~~~~i~~~-~~~~g~~v~yli~~~~~l~~l~~~ 59 (379)
.++|...++.-+.|..||.+|..+..+... +..+|=-..-..+.++.+..+++.
T Consensus 83 ~G~~~Gl~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~ 137 (484)
T PRK11375 83 AGSKYGVPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGK 137 (484)
T ss_pred cccccCCChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788899999999999999888888874 567777777777788887777654
No 52
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=96.53 E-value=0.0096 Score=59.92 Aligned_cols=64 Identities=19% Similarity=0.168 Sum_probs=53.6
Q ss_pred HHHHHHHhhhHHhhcCCchhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhcccccCc
Q 016969 146 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDN 212 (379)
Q Consensus 146 ~~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~ 212 (379)
..+++.++....++|.|-......-+|.||| +|+.+|+...++....++|......-=...+.+
T Consensus 199 ~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P---~k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~ 262 (478)
T PF00324_consen 199 FSGFFAALVFAFFAFVGFESIAILAEEAKNP---RKTIPRATLLSVLRIGVFYVLTSYALTLAVPYD 262 (478)
T ss_pred hhHHHHhhhhhhcccccccccccccccCCCc---hhhhhhHhhhhhhhhhhhhhhhhhhcccccCcc
Confidence 3458889999999999999999999999998 378999999999999999988777655555543
No 53
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=96.10 E-value=0.19 Score=50.33 Aligned_cols=73 Identities=11% Similarity=-0.024 Sum_probs=50.1
Q ss_pred HHHHHHHHhhhHHhhcCCchhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhcccccCccccccccc
Q 016969 145 KMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTG 220 (379)
Q Consensus 145 ~~~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~v~~~il~n 220 (379)
+-|.+..++-.-+..+.|--....+-+|-||+ .++-+|+...+..+..++-..+-+.=..+-++|.+...-.+
T Consensus 250 ~G~afil~f~~~~wt~sGyDa~~H~aEE~~nA---sk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~ 322 (550)
T KOG1289|consen 250 NGWAFILGFFNPAWTMSGYDAAAHMAEETKNA---SKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSS 322 (550)
T ss_pred chHHHHHhhccceeEEeccCchHHHHHHhcch---hhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCC
Confidence 45677777777788888888888899999986 26788888877777766655555544556665443333334
No 54
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=96.04 E-value=0.066 Score=50.90 Aligned_cols=176 Identities=12% Similarity=0.057 Sum_probs=108.1
Q ss_pred CCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHH-HHHHH
Q 016969 10 YLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFG-AVQLI 88 (379)
Q Consensus 10 ~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~-~i~~p 88 (379)
+..|..|..++.+||+..........++.+..+...+-..+|.++... .+ +...|.+... ....-
T Consensus 60 p~~~l~~~~~~~~Gk~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~----lp----------~TP~~~i~~~~ll~~~ 125 (320)
T PF03845_consen 60 PGKTLVEISEKLFGKWLGKIINLLYILYFLLISALVLREFSEFIKTYL----LP----------ETPIWVIILLFLLVAA 125 (320)
T ss_pred CCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cC----------cCCHHHHHHHHHHHHH
Confidence 678999999999999988888888888888887777777777666544 11 1122333222 22233
Q ss_pred hccCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhhHHHHHHHHhhhHHhhcCCchhHHH
Q 016969 89 LSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIE 168 (379)
Q Consensus 89 ls~~r~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~~~~ 168 (379)
-...+.++.+...+.+-....+...+++......+ . +.+ .+.. -...+..+.+.+.-...+.|.+-....-
T Consensus 126 y~a~~G~e~i~R~~~~~~~~~~i~~~~i~~~~~~~-~---~~~-~l~P----~~~~g~~~i~~~~~~~~~~~~~~~~~l~ 196 (320)
T PF03845_consen 126 YAARKGIEVIARVAEILFPIFLILLLLILLLSIPN-I---DWD-NLLP----VLESGIKPILKGSLVISFPFGGIEILLF 196 (320)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-C---CHH-HeeC----cccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456777777655444332222212112221111 1 100 0111 1112233456666666777777777777
Q ss_pred HHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhcccccCc
Q 016969 169 IQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDN 212 (379)
Q Consensus 169 i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~ 212 (379)
+...+|+| +|..|....+......+|...-+..-..||.+
T Consensus 197 ~~p~~~~~----~~~~k~~~~~~~~~~~~~~~~~~~~i~vfG~~ 236 (320)
T PF03845_consen 197 LFPFVKDK----KKLKKSLLIAILISGLFLLFIIFITIGVFGPE 236 (320)
T ss_pred HHHHcCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 78888875 67788888888888888888888888888864
No 55
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=95.90 E-value=2.3 Score=42.96 Aligned_cols=85 Identities=14% Similarity=0.130 Sum_probs=58.4
Q ss_pred CCCCHHhHhhhhcCcC-cchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHH
Q 016969 10 YLPDKFDASHGFSGKT-NAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLI 88 (379)
Q Consensus 10 ~~~sY~dl~~~~~G~~-~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~p 88 (379)
+..|..|.-++-||++ .+.+..+...+..++...+.+.-.+..++.+.+ ++...-+++..++++-
T Consensus 106 ~~~T~~e~l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g--------------i~~~~~iii~~~iv~i 171 (483)
T PRK09442 106 NAVTLNDMLRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG--------------ISYETGLLIFGITVAL 171 (483)
T ss_pred CCccHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHH
Confidence 6799999999999976 466666666666666666777777777776652 1122223444556677
Q ss_pred hccCCCCCchhHHHHHHHHH
Q 016969 89 LSQAPDFHNIQSLSVIAAVM 108 (379)
Q Consensus 89 ls~~r~l~~l~~~S~~~~~~ 108 (379)
.+..--++...++..+=.+.
T Consensus 172 Yt~~GGl~av~~TD~iQ~~i 191 (483)
T PRK09442 172 YTAFGGFRAVVLTDALQGIV 191 (483)
T ss_pred HHHhccHHHHHHHHHHHHHH
Confidence 77888888888888776554
No 56
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=95.73 E-value=0.52 Score=46.53 Aligned_cols=171 Identities=18% Similarity=0.127 Sum_probs=95.1
Q ss_pred hHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHHhccC--C
Q 016969 16 DASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQA--P 93 (379)
Q Consensus 16 dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~--r 93 (379)
.++|+.||.++.++..+.+.+.++|-...-.+..++. ... . + ..+...++++.++++...+.. |
T Consensus 85 i~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a---~~~---~----~----~~~~~~~ili~g~l~~l~~ifG~r 150 (442)
T COG1457 85 ILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIA---IGS---G----T----GLPVWAGILIIGVLMTLVTIFGYR 150 (442)
T ss_pred eeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccc---ccc---C----C----CCcHHHHHHHHHHHHHHHHHHhHH
Confidence 4689999999999999999999999999988888886 111 1 1 123445566666555555544 6
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhhHHHHHHHHhhhHH-hhcCCchhHHHHHhH
Q 016969 94 DFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIA-FAYPYSLILIEIQDT 172 (379)
Q Consensus 94 ~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-faf~~~~~~~~i~~~ 172 (379)
-++.+...+.......+.+.+. . +.+.. +..+. ....+ .+...+ +..+++..+ +.-.......+..+-
T Consensus 151 ~l~~l~~~a~~~~~~lf~~l~~---~-~~~~~--~~~~~-~~~~~-~~~~~~---fl~a~slv~g~~~sw~~~~aDysRy 219 (442)
T COG1457 151 ALHKLERIAVPLLLLLFLYLLA---L-LFRSK--GGLDA-LWVKG-PTSPLS---FLSALSLVIGSFASWGPYAADYSRY 219 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---H-HHhcc--cccce-eeccC-CCcchh---HHHHHHHHHHHHHhhhhhhhhhhhh
Confidence 6777766666555432222221 1 11110 00011 01000 011111 222222111 122233456677788
Q ss_pred hCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhcccccCcc
Q 016969 173 LKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT 213 (379)
Q Consensus 173 M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~v 213 (379)
+|+|+| +|.......+......+-+..|...-.+=|++.
T Consensus 220 ~~~~t~--~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~ 258 (442)
T COG1457 220 APSPTP--SKAFLAAVLGFFLGTSFMMILGAALAAAAGNAD 258 (442)
T ss_pred cCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 887633 244444556666677777788888888888765
No 57
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=95.63 E-value=0.62 Score=43.85 Aligned_cols=81 Identities=17% Similarity=0.126 Sum_probs=59.5
Q ss_pred ccccCCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhh--HHHH
Q 016969 6 PFYFYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYM--LIFG 83 (379)
Q Consensus 6 ~~~~~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~--~i~~ 83 (379)
..+-+.++|+|.-++.+||+...+.|+.+....+++|+.-+--.|.++++.++ -..|+ ++..
T Consensus 60 g~~f~a~~y~~~~~~v~~~~~~ki~d~~iif~lf~~~vVM~AGags~~~e~~~----------------lP~wiGali~i 123 (349)
T COG3949 60 GKKFNATSYREILKYVSGPKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFG----------------LPYWIGALIII 123 (349)
T ss_pred HHHhcccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhC----------------ccHHHHHHHHH
Confidence 34558899999999999999999999999999999999888777777666542 22344 2333
Q ss_pred HHHHHhccCCCCCchhHHH
Q 016969 84 AVQLILSQAPDFHNIQSLS 102 (379)
Q Consensus 84 ~i~~pls~~r~l~~l~~~S 102 (379)
..+..+-++++.+.+--..
T Consensus 124 ~~v~i~lfl~~vegi~tvn 142 (349)
T COG3949 124 LLVLILLFLGRVEGIITVN 142 (349)
T ss_pred HHHHHHHHHhcccceeeeh
Confidence 4445555666677664443
No 58
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=95.62 E-value=2.8 Score=42.05 Aligned_cols=85 Identities=15% Similarity=0.175 Sum_probs=60.7
Q ss_pred CCCCHHhHhhhhcCcC-cchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHH
Q 016969 10 YLPDKFDASHGFSGKT-NAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLI 88 (379)
Q Consensus 10 ~~~sY~dl~~~~~G~~-~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~p 88 (379)
+..|.+|.-++-||++ .+.+..++..+..++...+.+.-.+..++.+.+ ++...-+++.+++.+-
T Consensus 105 ~~~T~~e~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g--------------i~~~~~iii~~~iv~i 170 (471)
T TIGR02119 105 NAITINDVLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG--------------LSYLTALFIFSSSVLI 170 (471)
T ss_pred CCccHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHH
Confidence 7789999999999965 577888888888888777777777777776652 1222223444555666
Q ss_pred hccCCCCCchhHHHHHHHHH
Q 016969 89 LSQAPDFHNIQSLSVIAAVM 108 (379)
Q Consensus 89 ls~~r~l~~l~~~S~~~~~~ 108 (379)
....--++...++..+=.+.
T Consensus 171 Yt~~GG~~av~~td~iQ~~v 190 (471)
T TIGR02119 171 YTTFGGFRAVALTDAIQGIV 190 (471)
T ss_pred HHHhhhHHHHHHHHHHHHHH
Confidence 77777888888888776543
No 59
>PRK11017 codB cytosine permease; Provisional
Probab=95.47 E-value=0.46 Score=46.81 Aligned_cols=51 Identities=12% Similarity=-0.123 Sum_probs=40.6
Q ss_pred ccccCCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHH
Q 016969 6 PFYFYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAI 56 (379)
Q Consensus 6 ~~~~~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l 56 (379)
+++|...++.-+.|..||.+|.++..+...+...|=......+.++.++++
T Consensus 65 ~G~k~G~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~ 115 (404)
T PRK11017 65 IGAKTGLSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKA 115 (404)
T ss_pred HHhccCcCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 467888899999999999999999988888888776666555666655554
No 60
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=95.15 E-value=1.9 Score=44.21 Aligned_cols=178 Identities=10% Similarity=0.004 Sum_probs=95.4
Q ss_pred HhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHH--HHHHHhccCCC
Q 016969 17 ASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFG--AVQLILSQAPD 94 (379)
Q Consensus 17 l~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~--~i~~pls~~r~ 94 (379)
-+++..|+....++.....+..+-++-+-....+..++.+... .+.....+ ..+...|..++. ++++.+.-.|-
T Consensus 101 ya~~~i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~--~~~~~~~~--~~~~~~~~~~fla~~v~in~~gv~~ 176 (554)
T KOG1286|consen 101 YAYRFVGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTGA--SLIGILVD--TVNPGGWIPDFLAFILIINLFGVLA 176 (554)
T ss_pred eeeeeeCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcc--cccccccc--CCCCCccHHHHHHHHHHHHHHHHhh
Confidence 3455666766777777777777777766666666666665400 00000000 122233443332 33344444454
Q ss_pred CCchhHHHHHHHHHHHHHHHHhhhheeeeeec-CCcccccccccccCc----hhhH-HHHHHHHhhhHHhhcCCchhHHH
Q 016969 95 FHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIG-NGFVMGSFSGVSTTT----SIEK-MWLVAQALGDIAFAYPYSLILIE 168 (379)
Q Consensus 95 l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~-~~~~~~~~~~~~~~~----~~~~-~~~~~~~~g~~~faf~~~~~~~~ 168 (379)
.-..++.+.+.-+.+++-++ +++..+.-+.. ++++++. |.+.+. ..+. +.+...++.+..|+|.|.-.+-.
T Consensus 177 ~ge~ef~~~~~kvl~~v~~~-Il~iVi~~G~~~~d~~~~i--g~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~ 253 (554)
T KOG1286|consen 177 YGEVEFSLAFNKILTAVGFI-ILAIVIIAGGGPADVKNWI--GFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVAT 253 (554)
T ss_pred ccceeehHHHHHHHHHHHHH-HhheeeecCCCcCCcCCCc--CccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHH
Confidence 34444333333332222111 12222222211 1111111 110000 1111 33467788899999999999888
Q ss_pred HHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhh
Q 016969 169 IQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF 204 (379)
Q Consensus 169 i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~ 204 (379)
.-.|-|||+ |+.+++...++..+..+|....+.
T Consensus 254 ~a~E~kNP~---k~IP~ai~~s~~ri~~~Yi~~~~~ 286 (554)
T KOG1286|consen 254 TAEEAKNPR---KAIPKAIKQSLLRILLFYILSSIV 286 (554)
T ss_pred HHHhccCCc---ccccHHHHHHHHHHHHHHHHHHHH
Confidence 899999983 788999999999999999877653
No 61
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=94.35 E-value=6.7 Score=39.74 Aligned_cols=190 Identities=12% Similarity=-0.013 Sum_probs=100.4
Q ss_pred cCCCCHHhHhhhhcC-cCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHH
Q 016969 9 FYLPDKFDASHGFSG-KTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQL 87 (379)
Q Consensus 9 ~~~~sY~dl~~~~~G-~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~ 87 (379)
++..|.+|.-++=|| ++.|.+..+...+..++-+.+.++-.++.++..... +...=.++.+.++.
T Consensus 102 ~~~~T~~d~l~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~gi--------------~~~~~~~~~~~~v~ 167 (493)
T COG0591 102 RGATTIPDFLEARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFGI--------------SYVTGILIGALIVA 167 (493)
T ss_pred cCCccHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC--------------CHHHHHHHHHHHHH
Confidence 478899999999999 889999999999999999999999999987555420 11111222344555
Q ss_pred HhccCCCCCchhHHHHHHHHHHHHHHHHhhhheeee--eecCCcc-cccccc-c--ccCchhhHHH--HHHHHhhhHHhh
Q 016969 88 ILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAK--VIGNGFV-MGSFSG-V--STTTSIEKMW--LVAQALGDIAFA 159 (379)
Q Consensus 88 pls~~r~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~--~~~~~~~-~~~~~~-~--~~~~~~~~~~--~~~~~~g~~~fa 159 (379)
.-...--++...++..+=.........++....... +..+..+ .+...+ . .........+ ......++.++.
T Consensus 168 ~Yt~~gG~~av~~Td~iqg~im~i~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 247 (493)
T COG0591 168 LYTFLGGLRAVVWTDFIQGLIMLIALIVIPILVLILFGGFGELFAVLASLAPLFLTHPFDGALSPIYIISLIAWGTLFLG 247 (493)
T ss_pred HHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhcccccccCcccccchHHHHHHHHHHHHHHhh
Confidence 556666777777777665443222111111111111 1111000 000000 0 0001101111 133456666677
Q ss_pred cCCchhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhcccccCc
Q 016969 160 YPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDN 212 (379)
Q Consensus 160 f~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~ 212 (379)
+.+++.+.+-+-..++++..+++.++........+...=..+|+.|...|.+.
T Consensus 248 ~~~~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~ 300 (493)
T COG0591 248 YFGQPHILPRFMAAKSIKSLPKSARLAGILWPLYCLLGAFLLGLLGIAYFPLL 300 (493)
T ss_pred hhcCchhhhhhhhhccHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 77766654433334433112234555544555555555466666666665543
No 62
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=94.31 E-value=4.5 Score=39.70 Aligned_cols=85 Identities=12% Similarity=0.038 Sum_probs=61.7
Q ss_pred CCCCHHhHhhhhcCc-CcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHH
Q 016969 10 YLPDKFDASHGFSGK-TNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLI 88 (379)
Q Consensus 10 ~~~sY~dl~~~~~G~-~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~p 88 (379)
+..|..|.-++-||+ ..+.+..+...+..+....+.+.-.+..++.+.+ ++...-+++.+++++-
T Consensus 64 ~~~T~~e~l~~Ryg~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g--------------i~~~~~~ii~~~i~~~ 129 (407)
T TIGR00813 64 GAYTMPEYLEKRFGKRILRGLSVLSLILYIFLYMSVDLFSGALLIELITG--------------LDLYLSLLLLGAITIL 129 (407)
T ss_pred CCCchhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------chHHHHHHHHHHHHHH
Confidence 679999999999998 4777777888888888888888888888777652 1122223344455556
Q ss_pred hccCCCCCchhHHHHHHHHH
Q 016969 89 LSQAPDFHNIQSLSVIAAVM 108 (379)
Q Consensus 89 ls~~r~l~~l~~~S~~~~~~ 108 (379)
-...--++...++..+=.+.
T Consensus 130 Yt~~GG~~av~~Td~iQ~~i 149 (407)
T TIGR00813 130 YTVFGGLKAVVWTDTIQAVI 149 (407)
T ss_pred HHHHcchHHHHHHHHHHHHH
Confidence 66777888888887776554
No 63
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=94.21 E-value=0.42 Score=46.95 Aligned_cols=86 Identities=12% Similarity=0.031 Sum_probs=51.0
Q ss_pred CCCCHHhHhhhhcCcCc--chhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHH
Q 016969 10 YLPDKFDASHGFSGKTN--AWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQL 87 (379)
Q Consensus 10 ~~~sY~dl~~~~~G~~~--~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~ 87 (379)
+..|.+|.-++-||++. +.+..+...+....-....+.-.+..++.+.+ ++...-.++..++.+
T Consensus 67 ~~~T~~e~~~~Ryg~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g--------------i~~~~~~~i~~~i~~ 132 (406)
T PF00474_consen 67 GAVTIPEYLEKRYGSKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG--------------IPYNTAILIVGVIVI 132 (406)
T ss_dssp T--SHHHHHHHHT-HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT----------------HHHHHHHHHHHHH
T ss_pred chhhhhhhhhhhcCCchhhhhhcccccchhhhhhhhccccccccchhhccc--------------hhhhHHHHHHHHHHH
Confidence 77899999999999988 66666666666667777777777776666542 122233344555666
Q ss_pred HhccCCCCCchhHHHHHHHHHH
Q 016969 88 ILSQAPDFHNIQSLSVIAAVMS 109 (379)
Q Consensus 88 pls~~r~l~~l~~~S~~~~~~~ 109 (379)
.....-=++...++..+-.+..
T Consensus 133 iYt~~GGl~av~~td~iQ~~i~ 154 (406)
T PF00474_consen 133 IYTFFGGLRAVAWTDFIQGVIM 154 (406)
T ss_dssp HTTCTT------SHHHHHHHHH
T ss_pred HhhhhhhHhhhhHHHHHHHHHH
Confidence 6777778888888887766543
No 64
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=93.25 E-value=10 Score=38.30 Aligned_cols=174 Identities=11% Similarity=0.068 Sum_probs=89.2
Q ss_pred CCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHH-
Q 016969 10 YLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLI- 88 (379)
Q Consensus 10 ~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~p- 88 (379)
..-+|.+-+.+.-++.....+...=..+-.-++-+-++..+..++-..+ + ..+...|..++.++++.
T Consensus 107 ~sGsF~~ya~rfvdpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p----~--------~v~~~~w~~iF~~~i~~i 174 (541)
T COG0833 107 VSGSFSTYATRFVDPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFP----D--------TVPPWIWIAIFLVLIFLL 174 (541)
T ss_pred CCCchhhhhhhhcCchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcC----C--------CCChHHHHHHHHHHHHHH
Confidence 3344777777777776665555554444444444444444333222221 0 12456677777655544
Q ss_pred -hccCCCCCchh-HHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccC-chhhHHHHHHHHhhhHHhhcCCchh
Q 016969 89 -LSQAPDFHNIQ-SLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTT-TSIEKMWLVAQALGDIAFAYPYSLI 165 (379)
Q Consensus 89 -ls~~r~l~~l~-~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~faf~~~~~ 165 (379)
+.-.|-..+-- |+|.+=.+..+.+.+ ++..+..+..+++......=+.+. .....+.++...+-+..|+|+|...
T Consensus 175 N~~~Vk~fGE~Efw~s~iKV~~ii~Fii--~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtEl 252 (541)
T COG0833 175 NLFGVKGFGETEFWFSSIKVLTIIGFII--LGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTEL 252 (541)
T ss_pred HHhcccccceehHHHHHHHHHHHHHHHH--HHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceee
Confidence 44456555554 555555443333222 222222221111100000000000 1112234466677777899999888
Q ss_pred HHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhh
Q 016969 166 LIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLF 200 (379)
Q Consensus 166 ~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~ 200 (379)
+---..|-||| +|..+|+.+..+-=..++|+.
T Consensus 253 vgiaAgEs~nP---~K~iPkAik~vfwRIl~FYi~ 284 (541)
T COG0833 253 VGLAAGESENP---RKSIPKAIKQVFWRILLFYIL 284 (541)
T ss_pred eeeeecccCCc---hhhhHHHHHHHHHHHHHHHHH
Confidence 76667889987 367888887777666666643
No 65
>PRK12488 acetate permease; Provisional
Probab=91.09 E-value=20 Score=36.81 Aligned_cols=85 Identities=14% Similarity=0.026 Sum_probs=58.2
Q ss_pred CCCCHHhHhhhhcC-cCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHH
Q 016969 10 YLPDKFDASHGFSG-KTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLI 88 (379)
Q Consensus 10 ~~~sY~dl~~~~~G-~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~p 88 (379)
+..|.+|.-++=|| ++.|.+..+...+..+.-..+.+.-.|..++.+.. ++...=+++.+++.+.
T Consensus 128 g~~T~~d~l~~Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g--------------i~~~~~iii~~~i~~~ 193 (549)
T PRK12488 128 GKYTFADVVSYRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG--------------ISYLYAVVIVGALMVL 193 (549)
T ss_pred CCcchHHHHHHHcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHH
Confidence 56899999998888 56888888888777777777777777777666642 1112123344455566
Q ss_pred hccCCCCCchhHHHHHHHHH
Q 016969 89 LSQAPDFHNIQSLSVIAAVM 108 (379)
Q Consensus 89 ls~~r~l~~l~~~S~~~~~~ 108 (379)
-+..-=++...++..+=.+.
T Consensus 194 Yt~~GGm~av~~td~iQ~~i 213 (549)
T PRK12488 194 YVTFGGMLATTWVQIIKAVL 213 (549)
T ss_pred HHhccchhHHHHHHHHHHHH
Confidence 66777788888888776544
No 66
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=90.02 E-value=24 Score=35.83 Aligned_cols=85 Identities=9% Similarity=-0.051 Sum_probs=50.4
Q ss_pred CCCCHHhHhhhhcCcCcch---hhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHH
Q 016969 10 YLPDKFDASHGFSGKTNAW---ACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQ 86 (379)
Q Consensus 10 ~~~sY~dl~~~~~G~~~~~---~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~ 86 (379)
+..|-.|.-++=||++.|. +..+...+..+.-+.+-+...+..++.+.+ ++...-+++.+.+.
T Consensus 106 ~~~T~~e~l~~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g--------------i~~~~~iii~~~iv 171 (502)
T PRK15419 106 NALTLPDYFTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG--------------MSYETALWAGAAAT 171 (502)
T ss_pred CceeHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHH
Confidence 6789999999999976544 344444444444444444445555555432 12222233445566
Q ss_pred HHhccCCCCCchhHHHHHHHHH
Q 016969 87 LILSQAPDFHNIQSLSVIAAVM 108 (379)
Q Consensus 87 ~pls~~r~l~~l~~~S~~~~~~ 108 (379)
+.-...-=++...++..+=.+.
T Consensus 172 ~iYt~~GGl~aV~~TD~iQ~~i 193 (502)
T PRK15419 172 ILYTFIGGFLAVSWTDTVQASL 193 (502)
T ss_pred HHHHHhhhHHHHHHHHHHHHHH
Confidence 6667777788888877776544
No 67
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=85.24 E-value=45 Score=33.67 Aligned_cols=85 Identities=8% Similarity=-0.059 Sum_probs=48.1
Q ss_pred CCCCHHhHhhhhcCcCcchh---hHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHH
Q 016969 10 YLPDKFDASHGFSGKTNAWA---CSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQ 86 (379)
Q Consensus 10 ~~~sY~dl~~~~~G~~~~~~---~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~ 86 (379)
+..|-.|.-++=||++.+.+ ..+...+....-...-+...+..++.+.+ ++...-+++.+++.
T Consensus 102 ~~~T~~e~l~~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g--------------i~~~~~iii~~~i~ 167 (487)
T TIGR02121 102 NSITLPDFFENRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG--------------LDYKTGLLIGALII 167 (487)
T ss_pred CCccHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------ccHHHHHHHHHHHH
Confidence 56788999999999754443 34444444444444445555555555542 11122233444555
Q ss_pred HHhccCCCCCchhHHHHHHHHH
Q 016969 87 LILSQAPDFHNIQSLSVIAAVM 108 (379)
Q Consensus 87 ~pls~~r~l~~l~~~S~~~~~~ 108 (379)
+.-...--++...++..+=.+.
T Consensus 168 ~~Yt~~GGl~av~~TD~iQ~~i 189 (487)
T TIGR02121 168 VIYTFFGGFLAVSWTDFVQGLL 189 (487)
T ss_pred HHHHHhhhHHHHHHHHHHHHHH
Confidence 5666666777777777665543
No 68
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=83.21 E-value=59 Score=33.43 Aligned_cols=84 Identities=11% Similarity=-0.077 Sum_probs=52.5
Q ss_pred CCCCHHhHhhhhcCc-CcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHH
Q 016969 10 YLPDKFDASHGFSGK-TNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLI 88 (379)
Q Consensus 10 ~~~sY~dl~~~~~G~-~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~p 88 (379)
+..|.+|.-++=||+ ..|.+..+...+..+.-.+..++-.+..++.+++ ++...=+++.+++++.
T Consensus 128 g~~T~~d~l~~Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g--------------i~~~~~iii~~~i~~~ 193 (549)
T TIGR02711 128 GRYTFADVASYRLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFG--------------LNYHVAVVLVGILMVM 193 (549)
T ss_pred CCccHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHH
Confidence 568999999988875 4677777777766666666666666666666542 1111113344455555
Q ss_pred hccCCCCCchhHHHHHHHH
Q 016969 89 LSQAPDFHNIQSLSVIAAV 107 (379)
Q Consensus 89 ls~~r~l~~l~~~S~~~~~ 107 (379)
-...-=++...++..+=.+
T Consensus 194 Yt~~GGm~av~~td~iQ~~ 212 (549)
T TIGR02711 194 YVLFGGMLATTWVQIIKAV 212 (549)
T ss_pred HHHhhhhHHHHHHHHHHHH
Confidence 5566667777777666544
No 69
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=78.22 E-value=0.87 Score=45.24 Aligned_cols=54 Identities=11% Similarity=-0.150 Sum_probs=45.1
Q ss_pred ccccCCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHh
Q 016969 6 PFYFYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKS 59 (379)
Q Consensus 6 ~~~~~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~ 59 (379)
.++|.-.++..++|..||.+|..+..+...+...|=...-..+.++.+..+.+.
T Consensus 65 ~G~r~Gl~~~v~sR~~FG~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~ 118 (440)
T PF02133_consen 65 IGPRTGLPTMVLSRASFGYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGI 118 (440)
T ss_dssp HHHCC---HHHHTTTTS-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccCCCchhcchhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456777788899999999999999999999999999999999999999999864
No 70
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=77.58 E-value=2.8 Score=40.84 Aligned_cols=78 Identities=14% Similarity=0.205 Sum_probs=56.4
Q ss_pred CCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHHhc
Q 016969 11 LPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILS 90 (379)
Q Consensus 11 ~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pls 90 (379)
..--.+++++.||+.|+.+..+.+.+.|+++|+..+...+|.++++.+. .+.+.|.++.+++..-++
T Consensus 254 ~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k-------------~~y~~~v~~~~l~s~~ia 320 (378)
T TIGR00796 254 AQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPK-------------LSYKTWVIVFTLFSFIVA 320 (378)
T ss_pred HHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------CCHHHHHHHHHHHHHHHH
Confidence 3345678999999999999999999999999999999999988887531 234556665555444444
Q ss_pred cCCCCCchhHHH
Q 016969 91 QAPDFHNIQSLS 102 (379)
Q Consensus 91 ~~r~l~~l~~~S 102 (379)
.. .++++-..+
T Consensus 321 ~~-Gl~~Ii~~~ 331 (378)
T TIGR00796 321 NL-GLTQIISIS 331 (378)
T ss_pred Hh-CHHHHHHHH
Confidence 33 444444444
No 71
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=72.20 E-value=6.2 Score=39.03 Aligned_cols=66 Identities=15% Similarity=0.184 Sum_probs=53.0
Q ss_pred HHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHHhccC
Q 016969 14 KFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQA 92 (379)
Q Consensus 14 Y~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~ 92 (379)
..+++++.+|+.|..+..+.+.+-|+-+|+.-....+|.++++.+. .+.+.|.++++++-..++..
T Consensus 263 L~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~k-------------isY~~~v~i~~i~S~~ian~ 328 (427)
T PF05525_consen 263 LSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFPK-------------ISYKVWVIIFTIFSFIIANL 328 (427)
T ss_pred HHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------cChHHHHHHHHHHHHHHHHh
Confidence 4567889999999999999999999999999999999999998752 34566776666555554433
No 72
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=71.46 E-value=1.1e+02 Score=30.27 Aligned_cols=46 Identities=13% Similarity=-0.056 Sum_probs=38.7
Q ss_pred CCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHH
Q 016969 12 PDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQ 57 (379)
Q Consensus 12 ~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~ 57 (379)
++.+|..++-|+++..++..+...+....++++-.+-.+-.++-++
T Consensus 77 ~~laq~ir~~y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~ 122 (416)
T COG1914 77 KGLAEAIRERYLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLF 122 (416)
T ss_pred CcHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4567777888999999999999999999999998888888777665
No 73
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=66.24 E-value=1.5e+02 Score=29.89 Aligned_cols=206 Identities=13% Similarity=0.122 Sum_probs=90.9
Q ss_pred ccccCCCCHHhHhhhhcCcCcch---hhHHHHHHHHhhhhheehhhhhhhHHHHHHhhcccc--CCCCcc-ccccCchhh
Q 016969 6 PFYFYLPDKFDASHGFSGKTNAW---ACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHR--EGHEAA-CEYSDTYYM 79 (379)
Q Consensus 6 ~~~~~~~sY~dl~~~~~G~~~~~---~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~--~~~~~~-~~~~~~~~~ 79 (379)
+.+|-.-+|+.+.|..||-+|.. +.+..+.+.-+|+=. -..+.-+..++.....++ .+++.+ -..+...++
T Consensus 97 ~G~~~gIpFpv~~RaSFGi~Ga~~p~l~R~i~A~~WyGvqt---y~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i 173 (497)
T COG1953 97 AGSKYGIPFPVLSRASFGIYGANFPALIRAIVAIVWYGVQT---YAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELI 173 (497)
T ss_pred cccccCCCchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHhccccccCCccccccCCcHHHHH
Confidence 56778889999999999987643 344444444444321 122222333333221111 111010 012222333
Q ss_pred HHHHHHH-HHhccCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCc--cccccc-ccccCchhhHHHHHHHHhhh
Q 016969 80 LIFGAVQ-LILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGF--VMGSFS-GVSTTTSIEKMWLVAQALGD 155 (379)
Q Consensus 80 ~i~~~i~-~pls~~r~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~g~ 155 (379)
..+..-. -.++..+-+++++++-..+..+..+.+ .++.++.....+. ..++.+ +. .+.....|.+..++..
T Consensus 174 ~F~ifW~l~~l~~~~g~~~Ir~~~~~a~p~~~~~~---~gl~Iw~~~~a~g~~~~~~~p~~~--~~~~~~~w~~~~~~~~ 248 (497)
T COG1953 174 CFFIFWVLQLLVLFKGMESIRKFETWAGPLVYIAM---LGLAIWALVKAGGSSILGELPAGT--VSGSNSSWAFLAGIAA 248 (497)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhchHHHHHH---HHHHHHHHHhcCCcCccccCCCCC--CCcchhHHHHHHHHHH
Confidence 3222111 233455566666666555544322221 1221221111110 011111 11 1222223333333322
Q ss_pred HHhhcCCc--hhHHHHHhHhCCCCCchhhhhh--hhHHHHHHHHHHHhhhhhhhcccccCcccc--ccccccC
Q 016969 156 IAFAYPYS--LILIEIQDTLKSPPPANQTMKK--ASTMSIITTTIFYLFCGGFGYAAFGDNTPG--NLLTGFG 222 (379)
Q Consensus 156 ~~faf~~~--~~~~~i~~~M~~p~p~~~~~~~--~~~~s~~~~~~~Y~~~g~~GY~~fG~~v~~--~il~n~~ 222 (379)
+.++-.. .|.|..-+.-|+|+ + +.... .+-..+.+..++=..++--++..||+...+ +++.+++
T Consensus 249 -~v~~~Atl~lN~~DFsRfa~s~~-~-~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~ 318 (497)
T COG1953 249 -WVGFWATLALNIPDFTRFAKSQK-A-QIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFL 318 (497)
T ss_pred -HHHHHHHHhcCCchhhcccCChh-h-hhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhc
Confidence 2233322 36677777777641 1 12221 233444555555566666778999998654 6777775
No 74
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=64.37 E-value=7.2 Score=34.28 Aligned_cols=152 Identities=14% Similarity=0.229 Sum_probs=81.5
Q ss_pred CCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccC-C-CCcccc------cc--------C
Q 016969 12 PDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHRE-G-HEAACE------YS--------D 75 (379)
Q Consensus 12 ~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~-~-~~~~~~------~~--------~ 75 (379)
....|++...|.|.+-.+.-++++++++|-...|--.+-.++-++.-.-...+. + ..++|+ |. .
T Consensus 130 vemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs~m~itcaa~g~dscgvead~~~~dtdrcwg~ilrrmday 209 (319)
T KOG3832|consen 130 VEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFSAMNITCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAY 209 (319)
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchHhhhhhhhhcCCccccccCCcccccccccchHHHhhhHHH
Confidence 456778888899999999999999999999999988777665555421100000 1 012221 11 1
Q ss_pred chhhHHHHH-HHHHhccCCCCCchhHHHHHHHHHHHHHHHHhhhheee--eeecCCcccccccccccCchhhHHHHHHHH
Q 016969 76 TYYMLIFGA-VQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVA--KVIGNGFVMGSFSGVSTTTSIEKMWLVAQA 152 (379)
Q Consensus 76 ~~~~~i~~~-i~~pls~~r~l~~l~~~S~~~~~~~~~~~~i~~~~~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (379)
|.+++++.+ +++|+.+. ++++-+++-.+...+--+- + ..+.++. +..+ |.. ... ++....-++-.-
T Consensus 210 r~flaiftlll~lpftf~-diqktk~iqiltslmrw~~-~-~~g~~l~tmqaee----daa-~a~---p~arc~cgfgkl 278 (319)
T KOG3832|consen 210 RFFLAIFTLLLCLPFTFA-DIQKTKHIQILTSLMRWAA-F-ILGISLATMQAEE----DAA-AAH---PPARCFCGFGKL 278 (319)
T ss_pred HHHHHHHHHHHcCceeEe-ccccchhHHHHHHHHHHHh-c-cchhhhhhhhhcc----ccc-ccC---Cccccccccccc
Confidence 234445543 34566654 4555555554443322111 1 1111111 1111 111 111 222222233345
Q ss_pred hhhHHhhcCCchhHHHHHhHhC
Q 016969 153 LGDIAFAYPYSLILIEIQDTLK 174 (379)
Q Consensus 153 ~g~~~faf~~~~~~~~i~~~M~ 174 (379)
+|...|+|.+|.+.|.....|+
T Consensus 279 ~~~aly~~~a~cmapda~gagq 300 (319)
T KOG3832|consen 279 FGCALYAFMAHCMAPDAIGAGQ 300 (319)
T ss_pred cchhhHHHHhhccCCCCCCCCe
Confidence 6788899999999987766665
No 75
>PRK10484 putative transporter; Provisional
Probab=63.71 E-value=1.8e+02 Score=29.70 Aligned_cols=93 Identities=12% Similarity=0.145 Sum_probs=47.9
Q ss_pred CCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhhee-hhhhhhhHHHHHHhhccccCCCCccccccCchhh--HHHHHHH
Q 016969 10 YLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAY-TVTSAISMRAIQKSNCYHREGHEAACEYSDTYYM--LIFGAVQ 86 (379)
Q Consensus 10 ~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~y-li~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~--~i~~~i~ 86 (379)
+..|-.|.-++=||++.+........+......+.. +...+..++++... ....+. +.....++ ++.+++.
T Consensus 99 ~~~T~~e~l~~Ryg~~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~--~~~~gi----~~~~~~~~~~~~~~~i~ 172 (523)
T PRK10484 99 GITTIPDFLEERYDKTTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHV--SELLGI----SYGAAIWLLVWLIGIIG 172 (523)
T ss_pred CCccHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hhhcCC----cHHHHHHHHHHHHHHHH
Confidence 568999999999999887776666554443332222 22233334443311 000010 01111121 1123344
Q ss_pred HHhccCCCCCchhHHHHHHHHH
Q 016969 87 LILSQAPDFHNIQSLSVIAAVM 108 (379)
Q Consensus 87 ~pls~~r~l~~l~~~S~~~~~~ 108 (379)
..-+..-=++...++..+=.+.
T Consensus 173 ~~Yt~~GGl~aV~~TD~iQ~vi 194 (523)
T PRK10484 173 AIYAVFGGLKAVAVSDTINGIG 194 (523)
T ss_pred hhhhhhhhHHHHHHHHHHHHHH
Confidence 5555666788888887776554
No 76
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=60.06 E-value=13 Score=36.37 Aligned_cols=64 Identities=16% Similarity=0.202 Sum_probs=51.4
Q ss_pred HHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHHhc
Q 016969 14 KFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILS 90 (379)
Q Consensus 14 Y~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pls 90 (379)
-.+..++.||+.|+.+..+++.+-|+-+++.-+...+|.++++.+. .+.+.|..+++++-+..+
T Consensus 265 L~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p~-------------~SY~~~v~if~i~sflva 328 (431)
T COG1114 265 LSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFSKLVPK-------------LSYKTWVIIFTLISFLVA 328 (431)
T ss_pred HHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------------ccHHHHHHHHHHHHHHHH
Confidence 3567789999999999999999999999999999999999998853 344567766665544433
No 77
>PRK09395 actP acetate permease; Provisional
Probab=52.69 E-value=2.8e+02 Score=28.52 Aligned_cols=84 Identities=11% Similarity=-0.069 Sum_probs=52.6
Q ss_pred CCCCHHhHhhhhcCc-CcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHH
Q 016969 10 YLPDKFDASHGFSGK-TNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLI 88 (379)
Q Consensus 10 ~~~sY~dl~~~~~G~-~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~p 88 (379)
+..|+.|.-++=||+ +.|.+..+...+..+.-..+.+.-.+..++.+.. ++...-+++..++.+.
T Consensus 130 g~~T~~d~l~~Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g--------------i~~~~~ili~~~i~~i 195 (551)
T PRK09395 130 GKYTFADVASYRLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG--------------LNYHVAVVLVGVLMMV 195 (551)
T ss_pred CCccHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHH
Confidence 568999999999995 4788877777666555555556666665555542 1122223344455555
Q ss_pred hccCCCCCchhHHHHHHHH
Q 016969 89 LSQAPDFHNIQSLSVIAAV 107 (379)
Q Consensus 89 ls~~r~l~~l~~~S~~~~~ 107 (379)
-+..-=++...++..+=.+
T Consensus 196 Yt~~GGm~av~~TD~iQ~i 214 (551)
T PRK09395 196 YVLFGGMLATTWVQIIKAV 214 (551)
T ss_pred HHhhcchHHHHHHHHHHHH
Confidence 6666667777777765544
No 78
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=48.33 E-value=31 Score=33.34 Aligned_cols=49 Identities=10% Similarity=-0.016 Sum_probs=42.1
Q ss_pred eccccCCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhH
Q 016969 5 IPFYFYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISM 53 (379)
Q Consensus 5 ~~~~~~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l 53 (379)
++-=++-+|.+|++++-.||++|.+..+...+.+..+..++....++.+
T Consensus 107 ~SvR~~G~Si~~i~~~~lG~~~~~lf~~f~~~~lilV~avF~~v~a~~~ 155 (376)
T PF02554_consen 107 ASVRHKGKSIGEIAGKYLGKRAKKLFLIFIFFLLILVIAVFADVVANTF 155 (376)
T ss_pred hhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444567899999999999999999999999999999998888877764
No 79
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=41.34 E-value=33 Score=34.14 Aligned_cols=63 Identities=14% Similarity=0.166 Sum_probs=49.6
Q ss_pred hHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHHhccC
Q 016969 16 DASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQA 92 (379)
Q Consensus 16 dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~ 92 (379)
...++.+|++++.+..+.+.+.|+-+++.-....+|.+++..+ .+.+.|.++.+++..+++..
T Consensus 269 ~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~--------------isY~~~v~i~~l~S~~lSn~ 331 (439)
T PRK15433 269 AYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP--------------LSYRTLVFILGGFSMVVSNL 331 (439)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------------CcHHHHHHHHHHHHHHHHHh
Confidence 3578999999999999999999999999999999998777652 23455666666666665543
No 80
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=38.49 E-value=69 Score=28.89 Aligned_cols=68 Identities=12% Similarity=0.277 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHccChHHHHHHH---------hhhhhhhhHhhhhhHHHHHhcCcch-----h-hHHHHHHHHHHHHHHH
Q 016969 296 VYVVSVTAIAMSFPYFNQVLGVI---------GGVIFWPLTIYFPVEMYFKQMNIEA-----W-TRKWVMLRVFSYVCFI 360 (379)
Q Consensus 296 ~~~~~~~~iA~~iP~l~~vl~lv---------Gs~~~~~l~fi~P~l~y~~~~~~~~-----~-~~~~~~~~~i~~~g~~ 360 (379)
...+.++++|..++-+|.++..+ ||.+|--|+++= |+-+-|... . ..+| +.|+++++|++
T Consensus 161 ~~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~n~q~w-Lwwi~~vlG~l 235 (262)
T KOG4812|consen 161 GIFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYFNGQYW-LWWIFLVLGLL 235 (262)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeecccccccccccchH-HHHHHHHHHHH
Confidence 34456677888888888777765 788877777764 433222110 0 1123 34667889988
Q ss_pred HHHHHHHH
Q 016969 361 VSTFGLVG 368 (379)
Q Consensus 361 ~~v~gt~~ 368 (379)
...-|++.
T Consensus 236 l~lr~~i~ 243 (262)
T KOG4812|consen 236 LFLRGFIN 243 (262)
T ss_pred HHHHHHHh
Confidence 88888754
No 81
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=36.09 E-value=4.2e+02 Score=25.83 Aligned_cols=53 Identities=17% Similarity=0.276 Sum_probs=28.9
Q ss_pred HHHhhhHHhhcCCchhHHHHHh-HhCCCCCchhhhhhhhHHHH---HHHHHHHhhhhhhhccc
Q 016969 150 AQALGDIAFAYPYSLILIEIQD-TLKSPPPANQTMKKASTMSI---ITTTIFYLFCGGFGYAA 208 (379)
Q Consensus 150 ~~~~g~~~faf~~~~~~~~i~~-~M~~p~p~~~~~~~~~~~s~---~~~~~~Y~~~g~~GY~~ 208 (379)
..+++-+.|+.. .+-.+.+ |+||| +++.++....+. .....+|.-.+..|-..
T Consensus 187 mD~laal~fg~i---iv~~i~~~g~~~~---~~~~~~~i~~G~ia~i~l~~vY~~L~~lGa~~ 243 (378)
T TIGR00796 187 MDALAALVFGII---VVNAIRSRGVTKP---KKITKYTIKAGLIAAVLLAFIYLSLFYLGATS 243 (378)
T ss_pred HHHHHHHHHHHH---HHHHHHHhCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 335555555543 3334455 88876 244555554444 44555666666666544
No 82
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=34.10 E-value=3.5e+02 Score=29.07 Aligned_cols=46 Identities=30% Similarity=0.525 Sum_probs=29.6
Q ss_pred HhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhh-hhcc--------cccCccccccc
Q 016969 170 QDTLKSPPPANQTMKKASTMSIITTTIFYLFCGG-FGYA--------AFGDNTPGNLL 218 (379)
Q Consensus 170 ~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~-~GY~--------~fG~~v~~~il 218 (379)
..++||| ||..+.....|.+.+..+|+.-.+ +|-. .||+.+.++..
T Consensus 433 SGDLkDa---QkSIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRDKfG~sv~g~lV 487 (1075)
T KOG2082|consen 433 SGDLKDA---QKSIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRDKFGQSVGGNLV 487 (1075)
T ss_pred Cccccch---hhcCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhccCcEE
Confidence 3577876 366777778888888888754433 3322 47777777653
No 83
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=33.46 E-value=5.5e+02 Score=26.35 Aligned_cols=89 Identities=6% Similarity=-0.109 Sum_probs=56.0
Q ss_pred ecccc--CCCCHHhHhhhhcCcC-cchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHH
Q 016969 5 IPFYF--YLPDKFDASHGFSGKT-NAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLI 81 (379)
Q Consensus 5 ~~~~~--~~~sY~dl~~~~~G~~-~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i 81 (379)
.|.+| +..|-.|.-++=||++ .|.+..+...+..+.-....+.-.+..++.+.. ++...-+++
T Consensus 86 ~p~~rr~~~~T~~e~l~~Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g--------------i~~~~~iii 151 (552)
T TIGR03648 86 APYLRKFGKYTVPDFIGDRYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE--------------VDFETGVFI 151 (552)
T ss_pred HHHHHHCCCccHHHHHHHHhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCHHHHHHH
Confidence 34444 5678888888889865 577777777777777677777777777666652 111112333
Q ss_pred HHHHHHHhccCCCCCchhHHHHHHHH
Q 016969 82 FGAVQLILSQAPDFHNIQSLSVIAAV 107 (379)
Q Consensus 82 ~~~i~~pls~~r~l~~l~~~S~~~~~ 107 (379)
.+++++.-+..-=++...++-.+=.+
T Consensus 152 ~~~i~~iYt~~GG~~aV~~TD~iQ~i 177 (552)
T TIGR03648 152 GMAIVFFYAVLGGMKGVTWTQVAQYI 177 (552)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 44455555566677777777666543
No 84
>PRK00701 manganese transport protein MntH; Reviewed
Probab=31.71 E-value=5.3e+02 Score=25.68 Aligned_cols=45 Identities=16% Similarity=0.234 Sum_probs=29.9
Q ss_pred CCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHH
Q 016969 12 PDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAI 56 (379)
Q Consensus 12 ~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l 56 (379)
++-.|+.++-||++..++.-+...+-+.+..+.-++-.+.-++.+
T Consensus 94 ~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll 138 (439)
T PRK00701 94 RDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLL 138 (439)
T ss_pred CCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888889999988777766666666666655555444444433
No 85
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=31.62 E-value=1e+02 Score=26.94 Aligned_cols=62 Identities=11% Similarity=0.149 Sum_probs=40.5
Q ss_pred HHHHHhhhhhhhhHhhhhhHHHHHhcCcch----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016969 314 VLGVIGGVIFWPLTIYFPVEMYFKQMNIEA----------WTRKWVMLRVFSYVCFIVSTFGLVGSIQGIIS 375 (379)
Q Consensus 314 vl~lvGs~~~~~l~fi~P~l~y~~~~~~~~----------~~~~~~~~~~i~~~g~~~~v~gt~~si~~li~ 375 (379)
..=..|++.++-+.-++|+...+..+|+.- .+.+.....+...+|+++.+.....|..++.+
T Consensus 46 ~vw~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~ 117 (195)
T PF05805_consen 46 EVWYFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSE 117 (195)
T ss_pred hheecCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344567788888889999999998654310 11122334455677777777777777777654
No 86
>PRK04949 putative sulfate transport protein CysZ; Validated
Probab=28.98 E-value=4.5e+02 Score=23.99 Aligned_cols=47 Identities=4% Similarity=0.108 Sum_probs=26.4
Q ss_pred HhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhcccccCccccccccccC
Q 016969 170 QDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFG 222 (379)
Q Consensus 170 ~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~v~~~il~n~~ 222 (379)
.+.+++| ++++.......+..++|...-..+.-.++|.. +.++...|
T Consensus 18 ~~~l~~P-----~lr~~~liPl~inllLf~~~l~~~~~~~~~~l-~~l~~~~p 64 (251)
T PRK04949 18 WKLILQP-----GLRRFVILPLLVNILLFGGAFWWLFTQLDAWI-DWLMSQLP 64 (251)
T ss_pred HHHhcCc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCc
Confidence 3556654 67777777777777776666433333344322 44444444
No 87
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=28.55 E-value=5.3e+02 Score=24.64 Aligned_cols=79 Identities=11% Similarity=0.153 Sum_probs=49.6
Q ss_pred CCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHHhc
Q 016969 11 LPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILS 90 (379)
Q Consensus 11 ~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pls 90 (379)
-++-.|..++-+||+..++..+...+.+....++-+.-.+.-++.+.. ++...+.++..+..+-+.
T Consensus 41 g~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~g--------------~~~~~~~~~~~~~~~~ll 106 (358)
T PF01566_consen 41 GKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLFG--------------IPLWIWVLLVAVIAILLL 106 (358)
T ss_pred CCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------------CCcHHHHHHHHHHHHHHH
Confidence 356677778888998888888888877777777766666665554431 223445554444444333
Q ss_pred c--CCCCCchhHHHH
Q 016969 91 Q--APDFHNIQSLSV 103 (379)
Q Consensus 91 ~--~r~l~~l~~~S~ 103 (379)
+ .++.|.+.....
T Consensus 107 ~~~~~~y~~~E~~~~ 121 (358)
T PF01566_consen 107 WLSSGGYRRLERILK 121 (358)
T ss_pred HHHhccchHHHHHHH
Confidence 3 667777765554
No 88
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=27.62 E-value=73 Score=20.77 Aligned_cols=30 Identities=30% Similarity=0.361 Sum_probs=21.4
Q ss_pred hhhhhHHHHHHHHHHHhhhhhhhcccccCc
Q 016969 183 MKKASTMSIITTTIFYLFCGGFGYAAFGDN 212 (379)
Q Consensus 183 ~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~ 212 (379)
|..+...++.+.+++-..+|..-|-+||+.
T Consensus 4 me~A~~~~i~i~~lL~~~TgyaiYtaFGpp 33 (46)
T PRK13183 4 MSPALSLAITILAILLALTGFGIYTAFGPP 33 (46)
T ss_pred cchhHHHHHHHHHHHHHHhhheeeeccCCc
Confidence 344556666777777777777778899974
No 89
>PF03134 TB2_DP1_HVA22: TB2/DP1, HVA22 family; InterPro: IPR004345 This family includes members from a wide variety of eukaryotes. It includes the TB2/DP1 (deleted in polyposis) protein which in human is deleted in severe forms of familial adenomatous polyposis, an autosomal dominant oncological inherited disease. The family also includes the plant protein of known similarity to TB2/DP1, the HVA22 abscisic acid-induced protein (e.g. Q07764 from SWISSPROT), which is thought to be a regulatory protein.
Probab=26.79 E-value=2.4e+02 Score=21.07 Aligned_cols=37 Identities=19% Similarity=0.348 Sum_probs=24.5
Q ss_pred HHHhhhhhhhhHhhhhhHHHHHh-c-CcchhhHHHHHHH
Q 016969 316 GVIGGVIFWPLTIYFPVEMYFKQ-M-NIEAWTRKWVMLR 352 (379)
Q Consensus 316 ~lvGs~~~~~l~fi~P~l~y~~~-~-~~~~~~~~~~~~~ 352 (379)
++.+...+..++++.|+.--.|. + ++++...+|...|
T Consensus 2 ~~~~~~l~~~i~~~yP~~~s~kal~~~~~~~~~~wL~YW 40 (94)
T PF03134_consen 2 GFIARLLCNLIGILYPAYKSFKALKSKDKKDLKQWLTYW 40 (94)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 45667778899999999888883 3 2333344555544
No 90
>PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake. Escherichia coli contains several members of this family including GntU, a low affinity transporter [] and GntT, a high affinity transporter [].; GO: 0015128 gluconate transmembrane transporter activity, 0035429 gluconate transmembrane transport, 0016020 membrane
Probab=26.43 E-value=6.6e+02 Score=25.10 Aligned_cols=83 Identities=10% Similarity=0.089 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHccC---hHHHHHHHhhhhhhhhHhhhhhHHHHHh-cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016969 295 TVYVVSVTAIAMSFPY---FNQVLGVIGGVIFWPLTIYFPVEMYFKQ-MNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSI 370 (379)
Q Consensus 295 ~~~~~~~~~iA~~iP~---l~~vl~lvGs~~~~~l~fi~P~l~y~~~-~~~~~~~~~~~~~~~i~~~g~~~~v~gt~~si 370 (379)
.+++....+.....|+ ..++++++|.-..+++.=.+=+++-+.. ++.++++.....+-.+--.|.+..+.|.-++.
T Consensus 236 iiLI~~~t~~~~~~~~~~~~~~~~~flG~p~iALlig~l~a~~~l~~~~~~~~~~~~~~~~~al~~~g~IlLItgaGGaf 315 (441)
T PF02447_consen 236 IILILLGTVADLFLPKGSPLRSILSFLGDPNIALLIGVLIALYLLGRRRGMSREEVMKWLEKALKPAGMILLITGAGGAF 315 (441)
T ss_pred HHHHHHHHHHHhccCCcchHHHHHHHhCCcHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHhhhcchHHH
Confidence 3344445555555654 5678888887765554444433333332 33333322223344455667777778888888
Q ss_pred HHHHHhh
Q 016969 371 QGIISAK 377 (379)
Q Consensus 371 ~~li~~~ 377 (379)
.+++++.
T Consensus 316 g~vl~~s 322 (441)
T PF02447_consen 316 GQVLKDS 322 (441)
T ss_pred HHHHHhC
Confidence 8777653
No 91
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=25.52 E-value=2.3e+02 Score=21.93 Aligned_cols=17 Identities=6% Similarity=0.008 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016969 353 VFSYVCFIVSTFGLVGS 369 (379)
Q Consensus 353 ~i~~~g~~~~v~gt~~s 369 (379)
.++++|++++....|.=
T Consensus 79 ~~lllGv~~G~~n~w~w 95 (100)
T TIGR02230 79 TMLIVGVVIGCLNAWHW 95 (100)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35677777777766543
No 92
>CHL00020 psbN photosystem II protein N
Probab=25.00 E-value=69 Score=20.58 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHhhhhhhhcccccCc
Q 016969 186 ASTMSIITTTIFYLFCGGFGYAAFGDN 212 (379)
Q Consensus 186 ~~~~s~~~~~~~Y~~~g~~GY~~fG~~ 212 (379)
+...++.+.+++-..+|..-|-+||+.
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGpp 30 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQP 30 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCc
Confidence 345566666777777777778899974
No 93
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=21.37 E-value=7.8e+02 Score=24.09 Aligned_cols=43 Identities=14% Similarity=0.155 Sum_probs=26.1
Q ss_pred CCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHH
Q 016969 12 PDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMR 54 (379)
Q Consensus 12 ~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~ 54 (379)
++-.|+.++-+|++.++..-+...+...+....-+.-.+.-++
T Consensus 64 ~~l~~~~r~~~~~~~~~~~~~~~~l~ii~~~~~e~~G~a~al~ 106 (390)
T TIGR01197 64 LDLAEVCREHYPKVPRITLWILAELAIIATDMAEVIGTAIALN 106 (390)
T ss_pred CCHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999999877766655554444444443333333333
No 94
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=20.37 E-value=84 Score=20.23 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHhhhhhhhcccccCc
Q 016969 187 STMSIITTTIFYLFCGGFGYAAFGDN 212 (379)
Q Consensus 187 ~~~s~~~~~~~Y~~~g~~GY~~fG~~ 212 (379)
...++.+.+++-..+|..-|-+||..
T Consensus 5 ~~~~i~i~~~lv~~Tgy~iYtaFGpp 30 (43)
T PF02468_consen 5 TVLAIFISCLLVSITGYAIYTAFGPP 30 (43)
T ss_pred eeHHHHHHHHHHHHHhhhhhheeCCC
Confidence 34555666666667777778899863
Done!