Query 016969
Match_columns 379
No_of_seqs 122 out of 1099
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 06:47:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016969.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016969hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 98.8 6E-08 2E-12 94.8 14.9 185 8-211 67-252 (445)
2 3gia_A Uncharacterized protein 98.4 1.9E-05 6.6E-10 76.9 19.8 180 7-210 65-248 (444)
3 4djk_A Probable glutamate/gamm 98.4 2.7E-06 9.4E-11 84.5 13.1 187 11-212 72-263 (511)
4 2jln_A MHP1; hydantoin, transp 96.9 0.0038 1.3E-07 61.8 9.9 92 7-108 83-174 (501)
5 3dh4_A Sodium/glucose cotransp 94.8 1.3 4.4E-05 43.9 17.5 87 10-110 81-168 (530)
6 2xq2_A Sodium/glucose cotransp 92.0 5.3 0.00018 40.0 16.8 86 10-109 110-196 (593)
7 1afo_A Glycophorin A; integral 19.4 1.6E+02 0.0054 17.6 4.2 21 354-374 14-34 (40)
8 3mp7_B Preprotein translocase 11.5 1.7E+02 0.0059 19.4 2.7 26 178-207 25-50 (61)
9 2wsw_A BCCT family betaine/car 11.2 1.7E+02 0.0059 28.4 3.6 67 41-107 419-486 (509)
10 3l1l_A Arginine/agmatine antip 10.1 9.3E+02 0.032 21.8 9.2 48 11-58 259-306 (445)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=98.81 E-value=6e-08 Score=94.85 Aligned_cols=185 Identities=8% Similarity=0.008 Sum_probs=104.0
Q ss_pred ccCCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHH-HHH
Q 016969 8 YFYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFG-AVQ 86 (379)
Q Consensus 8 ~~~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~-~i~ 86 (379)
+++.-+.-+.+++.+|++...++.+...+.......++....++.+...++.. . . .+. .+.+... .++
T Consensus 67 ~p~~Gg~y~~~~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~--~~~--~~~~~~~~~~~ 135 (445)
T 3l1l_A 67 DPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL-----K--D--PWV--LTITCVVVLWI 135 (445)
T ss_dssp CCCTTTHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGG-----G--S--HHH--HHHHHHHHHHH
T ss_pred CCCCCCchhhHHhHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccc-----c--c--cHH--HHHHHHHHHHH
Confidence 34445677888999999998888888888777666666666666554333210 0 0 011 1111111 111
Q ss_pred HHhccCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhhHHHHHHHHhhhHHhhcCCchhH
Q 016969 87 LILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLIL 166 (379)
Q Consensus 87 ~pls~~r~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~~ 166 (379)
+-..-.+..|....++.+.....+...++.+...+... + +. +. ...+. .....+..++..++....|+|.|....
T Consensus 136 ~~~in~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~-~-~~-~~-~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~ 210 (445)
T 3l1l_A 136 FVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWF-R-GE-TY-MAAWN-VSGLGTFGAIQSTLNVTLWSFIGVESA 210 (445)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTC-C-CC-CC-CCC------------HHHHHHHHHHTTTTTTHH
T ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C-hh-hc-ccccC-ccCCccHHHHHHHHHHHHHHHHhHHHH
Confidence 22222345555555544443322222111122222111 1 10 00 01110 011112345778889999999999999
Q ss_pred HHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhcccccC
Q 016969 167 IEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGD 211 (379)
Q Consensus 167 ~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~ 211 (379)
....+|+||| +|+.+|+...+...+.++|+...+.-....+.
T Consensus 211 ~~~~~e~k~p---~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~ 252 (445)
T 3l1l_A 211 SVAAGVVKNP---KRNVPIATIGGVLIAAVCYVLSTTAIMGMIPN 252 (445)
T ss_dssp HHGGGGBSSH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHhcCc---cccccHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 9999999987 37899999999999999999888776665554
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=98.40 E-value=1.9e-05 Score=76.88 Aligned_cols=180 Identities=8% Similarity=-0.008 Sum_probs=100.3
Q ss_pred cccCCCCHHhHhhhhcCcCc-chhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHH--
Q 016969 7 FYFYLPDKFDASHGFSGKTN-AWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFG-- 83 (379)
Q Consensus 7 ~~~~~~sY~dl~~~~~G~~~-~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~-- 83 (379)
.|++.-..-+.+++.+|++. .-.+.....+.....+..+....++.+..+++. . +...+..+..
T Consensus 65 ~~P~~Gg~y~~~~~~~G~~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~---------~~~~~~~~~~~~ 131 (444)
T 3gia_A 65 KIVSNAGPIAFIHKAIGDNIITGALSILLWMSYVISIALFAKGFAGYFLPLINA----P---------INTFNIAITEIG 131 (444)
T ss_dssp TCCCTTTHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----C---------CCHHHHHHHHHH
T ss_pred hCCCCCcHHHhHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----C---------CchHHHHHHHHH
Confidence 34455567788889999962 222344555555556666677777766655421 0 0111211111
Q ss_pred -HHHHHhccCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhhHHHHHHHHhhhHHhhcCC
Q 016969 84 -AVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPY 162 (379)
Q Consensus 84 -~i~~pls~~r~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~faf~~ 162 (379)
.+++-..-.+..|....++.+.....+...++.++..+... ++.+ ..+ ...+..+.+++.+++...|+|.|
T Consensus 132 ~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~---~~~~--~~~---~~~~~g~~~~~~~~~~~~~a~~G 203 (444)
T 3gia_A 132 IVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITI---HPSY--VIP---DLAPSAVSGMIFASAIFFLSYMG 203 (444)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CGGG--TSC---CCSHHHHHHHHHHHHHGGGGGTH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---Chhh--cCC---CCCCcchHHHHHHHHHHHHHHHh
Confidence 11122223345555555544433322221111111122211 1111 110 01122334577888888999999
Q ss_pred chhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhccccc
Q 016969 163 SLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFG 210 (379)
Q Consensus 163 ~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG 210 (379)
........+|+||| +|+.+|+...+...+.++|....+......+
T Consensus 204 ~e~~~~~~~e~k~P---~r~ip~ai~~~~~~~~~~y~~~~~~~~~~~~ 248 (444)
T 3gia_A 204 FGVITNASEHIENP---KKNVPRAIFISILIVMFVYVGVAISAIGNLP 248 (444)
T ss_dssp HHHHHTTGGGBSSH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHccCc---ccchhHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999987 3679999999999999999988776555544
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=98.37 E-value=2.7e-06 Score=84.53 Aligned_cols=187 Identities=10% Similarity=-0.056 Sum_probs=99.0
Q ss_pred CCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCc-hhhHHHH-HHHHH
Q 016969 11 LPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDT-YYMLIFG-AVQLI 88 (379)
Q Consensus 11 ~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-~~~~i~~-~i~~p 88 (379)
.-..-.-+++.+|++...++.....+.......++....++.+..++. +. + ...+.. .+.+... .+++-
T Consensus 72 ~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~p-~----~~~~~~~~~~~~~~~~~~~~ 142 (511)
T 4djk_A 72 EGGVFAWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILK----WP-A----LNEDPITKTIAALIILWALA 142 (511)
T ss_dssp --CHHHHHHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTT----CG-G----GTSCSSHHHHHHHHHHHHHH
T ss_pred CCChhhhHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----Cc-c----cccCcHHHHHHHHHHHHHHH
Confidence 455666778999998888888888777776666666666665543320 10 0 000111 1121111 12222
Q ss_pred hccCCCCCchhHHHHHHHHHHHH-HHHHhhhheeeeeecCCcc--cccccccccCchhhHHHHHHHHhhhHHhhcCCchh
Q 016969 89 LSQAPDFHNIQSLSVIAAVMSFA-YSFIGFGLGVAKVIGNGFV--MGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLI 165 (379)
Q Consensus 89 ls~~r~l~~l~~~S~~~~~~~~~-~~~i~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~ 165 (379)
..-.+..|....+..+.....++ ..++.+...+.....+++. +.+..+.. +. ....+...++....|+|.|...
T Consensus 143 ~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~a~~G~e~ 219 (511)
T 4djk_A 143 LTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFF--PD-FSKVGTLVVFVAFILSYMGVEA 219 (511)
T ss_dssp HHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCC--CC-TTSTTTTTTHHHHHHHHTTGGG
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccC--CC-cccchHHHHHHHHHHHHhhHHH
Confidence 33334556555555443222111 0111111111111111100 00001110 00 0001233456778999999999
Q ss_pred HHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhcccccCc
Q 016969 166 LIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDN 212 (379)
Q Consensus 166 ~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~ 212 (379)
.....+|+||| +|+.+|++..++..+.++|+...+.-....+++
T Consensus 220 ~~~~a~E~k~P---~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~ 263 (511)
T 4djk_A 220 SATHVNEMSNP---GRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGN 263 (511)
T ss_dssp GTGGGSSSSCC---TTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHhccCc---ccchhHHHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence 99999999998 278999999999999999999888766666653
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=96.86 E-value=0.0038 Score=61.81 Aligned_cols=92 Identities=14% Similarity=-0.013 Sum_probs=65.8
Q ss_pred cccCCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHH
Q 016969 7 FYFYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQ 86 (379)
Q Consensus 7 ~~~~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~ 86 (379)
..|...+|.++.|..||+++..+..+...+.++|-...-....++.+..+++... +. .+.....+++.++.
T Consensus 83 G~~~Gl~~~v~~R~~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~-g~--------~~~~v~~~i~~~l~ 153 (501)
T 2jln_A 83 AIRWGINFTVAARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLT-GF--------TNLPLWIVIFGAIQ 153 (501)
T ss_dssp HHHHCCCHHHHTTTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CC--------CCHHHHHHHHHHHH
T ss_pred HhhcCCChhhhhHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-Cc--------chHHHHHHHHHHHH
Confidence 3455567999999999999999999999999999999888889999888875321 10 01123344555666
Q ss_pred HHhccCCCCCchhHHHHHHHHH
Q 016969 87 LILSQAPDFHNIQSLSVIAAVM 108 (379)
Q Consensus 87 ~pls~~r~l~~l~~~S~~~~~~ 108 (379)
++.. ..-++.++.+..++...
T Consensus 154 ~~~~-~~G~~~i~~~~~~~~p~ 174 (501)
T 2jln_A 154 VVTT-FYGITFIRWMNVFASPV 174 (501)
T ss_dssp HHHH-TTHHHHHHHHHHHHHHH
T ss_pred HHHH-HhCHHHHHHHHHHHHHH
Confidence 6666 44567777766666543
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=94.78 E-value=1.3 Score=43.86 Aligned_cols=87 Identities=10% Similarity=-0.002 Sum_probs=46.7
Q ss_pred CCCCHHhHhhhhcCcCcchhhHHHHHH-HHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHH
Q 016969 10 YLPDKFDASHGFSGKTNAWACSFFVHV-GLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLI 88 (379)
Q Consensus 10 ~~~sY~dl~~~~~G~~~~~~~~i~~~~-~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~p 88 (379)
+..|..|.-++-||++.+.+..+...+ +.+..+.+-+...+..++.+.. ++...-+++.+++...
T Consensus 81 ~~~T~~e~l~~Rfg~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~G--------------i~~~~~i~i~~~i~~~ 146 (530)
T 3dh4_A 81 GIYTIPEFVEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG--------------IPLMYSILGLALFALV 146 (530)
T ss_dssp TCCSHHHHHHHHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--------------CCHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHH
Confidence 679999999999999888777765543 2222222222233333333321 1222223344555567
Q ss_pred hccCCCCCchhHHHHHHHHHHH
Q 016969 89 LSQAPDFHNIQSLSVIAAVMSF 110 (379)
Q Consensus 89 ls~~r~l~~l~~~S~~~~~~~~ 110 (379)
-+..--++...++..+=.+..+
T Consensus 147 Yt~~GGl~aV~~TD~iQ~~im~ 168 (530)
T 3dh4_A 147 YSIYGGLSAVVWTDVIQVFFLV 168 (530)
T ss_dssp TTC------CCSHHHHHHHHHH
T ss_pred HHHhcchHHHHHHHHHHHHHHH
Confidence 7777888888888877665433
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=92.04 E-value=5.3 Score=39.99 Aligned_cols=86 Identities=10% Similarity=-0.003 Sum_probs=48.8
Q ss_pred CCCCHHhHhhhhcCcCcchhhHHHHHH-HHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHH
Q 016969 10 YLPDKFDASHGFSGKTNAWACSFFVHV-GLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLI 88 (379)
Q Consensus 10 ~~~sY~dl~~~~~G~~~~~~~~i~~~~-~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~p 88 (379)
+..|..|.-++=||++.+.+..+...+ +.+....+-+...+..++.+.+ ++...-+++.++++..
T Consensus 110 ~~~T~~e~l~~Rfg~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~G--------------i~~~~~i~i~~~i~~~ 175 (593)
T 2xq2_A 110 GIYTIPEFVEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG--------------IPLMYSILGLALFALV 175 (593)
T ss_dssp TCCSHHHHHHHHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------ccHHHHHHHHHHHHHH
Confidence 678999999999999887776655443 2322222233334555555441 1222223344555567
Q ss_pred hccCCCCCchhHHHHHHHHHH
Q 016969 89 LSQAPDFHNIQSLSVIAAVMS 109 (379)
Q Consensus 89 ls~~r~l~~l~~~S~~~~~~~ 109 (379)
-+..--++...++-.+-.+..
T Consensus 176 Yt~~GGl~av~~TD~iQ~iim 196 (593)
T 2xq2_A 176 YSIYGGLSAVVWTDVIQVFFL 196 (593)
T ss_dssp HHHTTC---CCHHHHHHHHHH
T ss_pred HHHhcchHHHHHHHHHHHHHH
Confidence 777778888888777665543
No 7
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=19.40 E-value=1.6e+02 Score=17.62 Aligned_cols=21 Identities=14% Similarity=0.055 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016969 354 FSYVCFIVSTFGLVGSIQGII 374 (379)
Q Consensus 354 i~~~g~~~~v~gt~~si~~li 374 (379)
.+++|+.+++.||.-.+.-.+
T Consensus 14 lII~~vmaGiIG~IllI~y~I 34 (40)
T 1afo_A 14 LIIFGVMAGVIGTILLISYGI 34 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777766554444
No 8
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=11.54 E-value=1.7e+02 Score=19.37 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=14.7
Q ss_pred CchhhhhhhhHHHHHHHHHHHhhhhhhhcc
Q 016969 178 PANQTMKKASTMSIITTTIFYLFCGGFGYA 207 (379)
Q Consensus 178 p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~ 207 (379)
|+++.|.++...+ .+-..++|++||.
T Consensus 25 Pd~~Ef~~iak~~----~iG~~i~G~iGf~ 50 (61)
T 3mp7_B 25 PNWATYKRAAKIT----GLGIILIGLIGML 50 (61)
T ss_dssp CCTTHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 5778888865433 2223445666654
No 9
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=11.18 E-value=1.7e+02 Score=28.40 Aligned_cols=67 Identities=12% Similarity=0.064 Sum_probs=40.7
Q ss_pred hhheehhhhhhhHHHHHHhhcccc-CCCCccccccCchhhHHHHHHHHHhccCCCCCchhHHHHHHHH
Q 016969 41 TAIAYTVTSAISMRAIQKSNCYHR-EGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAV 107 (379)
Q Consensus 41 ~~v~yli~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~~l~~~S~~~~~ 107 (379)
.++.|.++.+|+...++...+.+. ++.++|..+.+..|-++.+.+-..|.+.-.++.|+-.+.++..
T Consensus 419 l~~~FfvTSaDS~s~vi~~~ss~g~~~~~~p~~~~rifW~v~~g~va~~LL~~ggl~aLQ~~~ii~al 486 (509)
T 2wsw_A 419 LCFIATVTLINACSYTLAMSTCRSMKEGADPPLLVRIGWSVLVGIIGIILLALGGLKPIQTAIIAGGC 486 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHBCCCCTTCCCCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 445789999999999988765432 1112232334445666555444444444568888887776654
No 10
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=10.11 E-value=9.3e+02 Score=21.77 Aligned_cols=48 Identities=21% Similarity=0.171 Sum_probs=42.6
Q ss_pred CCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHH
Q 016969 11 LPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQK 58 (379)
Q Consensus 11 ~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~ 58 (379)
.....++.+..+|+++..++.+...+..++...+++...+..+..+.+
T Consensus 259 ~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~ 306 (445)
T 3l1l_A 259 ASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAAD 306 (445)
T ss_dssp TCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356889999999999999999999999999999999999888888765
Done!