Query 016969
Match_columns 379
No_of_seqs 122 out of 1099
Neff 8.8
Searched_HMMs 13730
Date Mon Mar 25 06:47:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016969.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016969hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rh5b_ f.23.28.1 (B:) Preprot 9.7 79 0.0057 19.1 2.0 27 178-208 18-44 (56)
2 d1jjcb2 a.6.1.1 (B:400-474) Do 5.9 1.5E+02 0.011 18.7 2.2 21 2-22 44-65 (75)
3 d1ppjc1 f.32.1.1 (C:261-379) M 5.9 4.1E+02 0.03 18.2 4.9 16 307-322 23-39 (119)
4 d1mgta1 a.4.2.1 (A:89-169) O6- 5.8 1.1E+02 0.008 19.9 1.4 16 8-24 18-33 (81)
5 d1sfea1 a.4.2.1 (A:93-176) Ada 5.7 1.4E+02 0.01 19.4 2.0 23 9-31 18-40 (84)
6 d1qnta1 a.4.2.1 (A:92-176) O6- 5.4 1.5E+02 0.011 19.3 2.0 23 9-31 18-40 (85)
7 d3cx5c1 f.32.1.1 (C:262-385) M 3.7 6.2E+02 0.045 17.2 5.0 16 307-322 23-39 (124)
8 d1jb0l_ f.31.1.1 (L:) Photosys 3.6 5.4E+02 0.039 18.4 4.0 26 149-174 122-147 (151)
9 d1ciya3 f.1.3.1 (A:33-255) del 3.5 3.9E+02 0.028 20.4 3.5 26 296-321 7-32 (223)
10 d1v54d_ f.23.1.1 (D:) Mitochon 3.1 6.3E+02 0.046 17.9 4.1 25 170-197 65-89 (144)
No 1
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=9.71 E-value=79 Score=19.12 Aligned_cols=27 Identities=19% Similarity=0.301 Sum_probs=15.8
Q ss_pred CchhhhhhhhHHHHHHHHHHHhhhhhhhccc
Q 016969 178 PANQTMKKASTMSIITTTIFYLFCGGFGYAA 208 (379)
Q Consensus 178 p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~ 208 (379)
|+++.|.++... +.+-.+++|+.||.-
T Consensus 18 P~~~Ef~~ia~v----~~iG~~i~G~IGf~I 44 (56)
T d1rh5b_ 18 PTKDEYLAVAKV----TALGISLLGIIGYII 44 (56)
T ss_dssp CCHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 577888875432 233345567777654
No 2
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=5.91 E-value=1.5e+02 Score=18.68 Aligned_cols=21 Identities=24% Similarity=-0.007 Sum_probs=16.7
Q ss_pred ceeecccc-CCCCHHhHhhhhc
Q 016969 2 SVTIPFYF-YLPDKFDASHGFS 22 (379)
Q Consensus 2 ~~~~~~~~-~~~sY~dl~~~~~ 22 (379)
.|++|.|| ....-+|+++.+.
T Consensus 44 ~V~vPs~R~Di~~~~DliEEi~ 65 (75)
T d1jjcb2 44 RVTPPSHRLDLRLEEDLVEEVA 65 (75)
T ss_dssp EEECCTTCTTCCSHHHHHHHHH
T ss_pred EEecchhccccCCcchHHHHHH
Confidence 58899999 6788888888653
No 3
>d1ppjc1 f.32.1.1 (C:261-379) Mitochondrial cytochrome b subunit, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.90 E-value=4.1e+02 Score=18.18 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=11.2
Q ss_pred HccC-hHHHHHHHhhhh
Q 016969 307 SFPY-FNQVLGVIGGVI 322 (379)
Q Consensus 307 ~iP~-l~~vl~lvGs~~ 322 (379)
.+|| ++-++.+++|+.
T Consensus 23 sipnK~gGvl~m~~si~ 39 (119)
T d1ppjc1 23 SIPNKLGGVLALAFSIL 39 (119)
T ss_dssp TCSSHHHHHHHHHHHHH
T ss_pred cCCchhHHHHHHHHHHH
Confidence 4886 777777777654
No 4
>d1mgta1 a.4.2.1 (A:89-169) O6-alkylguanine-DNA alkyltransferase {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Probab=5.76 E-value=1.1e+02 Score=19.86 Aligned_cols=16 Identities=6% Similarity=-0.180 Sum_probs=12.0
Q ss_pred ccCCCCHHhHhhhhcCc
Q 016969 8 YFYLPDKFDASHGFSGK 24 (379)
Q Consensus 8 ~~~~~sY~dl~~~~~G~ 24 (379)
|-+..||.|+|+.+ |.
T Consensus 18 ~G~v~TYg~iA~~~-g~ 33 (81)
T d1mgta1 18 RGSVITYGDLAKAL-NT 33 (81)
T ss_dssp TTCCEEHHHHHHHT-TS
T ss_pred CCCeEeHHHHHHHc-CC
Confidence 34678999999866 44
No 5
>d1sfea1 a.4.2.1 (A:93-176) Ada DNA repair protein {Escherichia coli [TaxId: 562]}
Probab=5.73 E-value=1.4e+02 Score=19.41 Aligned_cols=23 Identities=4% Similarity=-0.159 Sum_probs=16.0
Q ss_pred cCCCCHHhHhhhhcCcCcchhhH
Q 016969 9 FYLPDKFDASHGFSGKTNAWACS 31 (379)
Q Consensus 9 ~~~~sY~dl~~~~~G~~~~~~~~ 31 (379)
-...||.|+|+.+--+...+.+.
T Consensus 18 G~v~TYg~iA~~~g~~~a~RaVg 40 (84)
T d1sfea1 18 GETVSYQQLANAIGKPKAVRAVA 40 (84)
T ss_dssp TCCEEHHHHHHHTTCTTCHHHHH
T ss_pred CCeeeHHHHHHHhCCcccHHHHH
Confidence 36789999998886555544443
No 6
>d1qnta1 a.4.2.1 (A:92-176) O6-alkylguanine-DNA alkyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.37 E-value=1.5e+02 Score=19.26 Aligned_cols=23 Identities=9% Similarity=-0.228 Sum_probs=16.1
Q ss_pred cCCCCHHhHhhhhcCcCcchhhH
Q 016969 9 FYLPDKFDASHGFSGKTNAWACS 31 (379)
Q Consensus 9 ~~~~sY~dl~~~~~G~~~~~~~~ 31 (379)
-...||.|+|+.+--+...+.+.
T Consensus 18 G~v~TYg~iA~~~g~p~aaRaVg 40 (85)
T d1qnta1 18 GEVISYQQLAALAGNPKAARAVG 40 (85)
T ss_dssp TCCEEHHHHHHHTTCTTCHHHHH
T ss_pred CCcccHHHHHHHcCCcchHHHHH
Confidence 36789999998876555555544
No 7
>d3cx5c1 f.32.1.1 (C:262-385) Mitochondrial cytochrome b subunit, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.74 E-value=6.2e+02 Score=17.20 Aligned_cols=16 Identities=19% Similarity=0.430 Sum_probs=10.5
Q ss_pred HccC-hHHHHHHHhhhh
Q 016969 307 SFPY-FNQVLGVIGGVI 322 (379)
Q Consensus 307 ~iP~-l~~vl~lvGs~~ 322 (379)
.+|+ ++-++.+.+|+.
T Consensus 23 siP~k~~Gvl~~~~si~ 39 (124)
T d3cx5c1 23 SIPDKLLGVITMFAAIL 39 (124)
T ss_dssp TSSSHHHHHHHHHHHHH
T ss_pred cCCcchhhhHHHHHHHH
Confidence 3786 666777766654
No 8
>d1jb0l_ f.31.1.1 (L:) Photosystem I reaction center subunit XI, PsaL {Synechococcus elongatus [TaxId: 32046]}
Probab=3.58 E-value=5.4e+02 Score=18.38 Aligned_cols=26 Identities=12% Similarity=0.179 Sum_probs=19.2
Q ss_pred HHHHhhhHHhhcCCchhHHHHHhHhC
Q 016969 149 VAQALGDIAFAYPYSLILIEIQDTLK 174 (379)
Q Consensus 149 ~~~~~g~~~faf~~~~~~~~i~~~M~ 174 (379)
+..++|-..|||..-.+..-+..-|+
T Consensus 122 ~~Gg~GGa~fAy~Ll~n~~~~d~i~~ 147 (151)
T d1jb0l_ 122 FVGAMGSAFVAFFLLENFLVVDGIMT 147 (151)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred hhccccHHHHHHHHHcchHHHHHHHH
Confidence 34688999999988887766655554
No 9
>d1ciya3 f.1.3.1 (A:33-255) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis, CRYIA (A) [TaxId: 1428]}
Probab=3.47 E-value=3.9e+02 Score=20.38 Aligned_cols=26 Identities=15% Similarity=0.160 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHccChHHHHHHHhhh
Q 016969 296 VYVVSVTAIAMSFPYFNQVLGVIGGV 321 (379)
Q Consensus 296 ~~~~~~~~iA~~iP~l~~vl~lvGs~ 321 (379)
.+-++.++++.++|..|.+++++|-+
T Consensus 7 ~~~~~~~ll~~~iP~~g~~~~li~~l 32 (223)
T d1ciya3 7 SLSLTQFLLSEFVPGAGFVLGLVDII 32 (223)
T ss_dssp HHHHHHHHHHCCSSSHHHHHHHHHHT
T ss_pred HHHHHHHHhhhcCCchHHHHHHHHHH
Confidence 34467788888899999888766543
No 10
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.09 E-value=6.3e+02 Score=17.89 Aligned_cols=25 Identities=4% Similarity=0.011 Sum_probs=13.6
Q ss_pred HhHhCCCCCchhhhhhhhHHHHHHHHHH
Q 016969 170 QDTLKSPPPANQTMKKASTMSIITTTIF 197 (379)
Q Consensus 170 ~~~M~~p~p~~~~~~~~~~~s~~~~~~~ 197 (379)
+.||+.|. ..++.++...++.+.+.
T Consensus 65 ~ae~~~p~---gewK~v~g~~~~~i~~s 89 (144)
T d1v54d_ 65 FAEMNRST---NEWKTVVGAAMFFIGFT 89 (144)
T ss_dssp HHHHTCCC---SHHHHHHHHHHHHHHHH
T ss_pred cccccCCC---CchhHHHHHHHHHHHHH
Confidence 47888762 44566655444433333
Done!