Query 016970
Match_columns 379
No_of_seqs 172 out of 346
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 04:28:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016970.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016970hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2674 Cysteine protease requ 100.0 2E-108 5E-113 816.2 25.5 321 39-378 17-346 (409)
2 PF03416 Peptidase_C54: Peptid 100.0 8E-101 2E-105 743.5 19.9 269 93-378 2-273 (278)
3 PF07910 Peptidase_C78: Peptid 98.0 6.3E-06 1.4E-10 78.2 5.3 32 299-331 149-185 (218)
4 KOG2433 Uncharacterized conser 97.4 0.0004 8.7E-09 70.9 7.0 68 122-212 403-473 (577)
5 KOG4696 Uncharacterized conser 92.5 0.1 2.2E-06 52.0 3.0 38 107-144 173-214 (393)
6 KOG4696 Uncharacterized conser 80.3 0.91 2E-05 45.5 1.6 22 122-143 124-145 (393)
7 KOG2674 Cysteine protease requ 69.1 0.61 1.3E-05 48.3 -2.9 73 120-214 135-207 (409)
8 PF13529 Peptidase_C39_2: Pept 49.4 21 0.00045 29.4 3.5 30 297-326 114-144 (144)
9 PF15644 Tox-PL: Papain fold t 44.9 20 0.00042 30.2 2.7 24 303-327 84-107 (111)
10 cd02549 Peptidase_C39A A sub-f 27.2 1.3E+02 0.0027 25.1 4.9 27 302-328 89-116 (141)
11 PF04843 Herpes_teg_N: Herpesv 20.4 2.2E+02 0.0048 26.2 5.4 41 285-329 106-152 (172)
No 1
>KOG2674 consensus Cysteine protease required for autophagy - Apg4p/Aut2p [Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-108 Score=816.15 Aligned_cols=321 Identities=42% Similarity=0.815 Sum_probs=293.0
Q ss_pred HHHH-HhcchhhHHHHHhcCCCCCCCCCCCCcEEEeCceecCCCcccccccCCCcchHHHHHhcccceEEeecCCCCCCC
Q 016970 39 VKRL-VTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIG 117 (379)
Q Consensus 39 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vwlLG~~Y~~~~~~~~~~~~~~~~~~~f~~df~SriWfTYR~~F~pI~ 117 (379)
+|++ +.+...+++.++++.+..++++..+++||+||++|.+..++. ++|++||.||||||||++|+||+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~lg~~y~is~~~~----------e~f~~D~~Sriw~TYR~~F~pig 86 (409)
T KOG2674|consen 17 VKTLGEASSHIRFLGKTVLFAELENIESGGEDVWILGRRYKISTEES----------EEFLSDVSSRLWFTYRRGFSPIG 86 (409)
T ss_pred HHHHHhhhhhhhhhhheecccccccCCCCCcceEEEeeeeeeccCHH----------HHHHHhhhhcceeeccCCCCccc
Confidence 5554 666777788889999999999999999999999999987642 89999999999999999999999
Q ss_pred CCcccccCCccccccchhHHHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHhhcCCCCCCCcchhHHHHHHHHcCCCCccc
Q 016970 118 DSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSW 197 (379)
Q Consensus 118 ~s~~TSD~GWGCMLRsgQMLLAqaL~~~~LGr~wr~~~~~~~~~~~~~IL~lF~D~~~apFSIH~iv~~G~~~gk~~GeW 197 (379)
++++|||+|||||||||||||||||+++||||+|+|+..+..+++|.+||++|.|.|.||||||||+++|...||++|+|
T Consensus 87 ~t~~ttD~GWGCMlR~gQMllaqaL~~~~lGRdw~w~~~~~~~~~y~~il~~F~D~~~a~~SiHq~~~~G~~~~~~~g~W 166 (409)
T KOG2674|consen 87 GTGPTTDCGWGCMLRCGQMLLAQALICRHLGRDWRWTDEKRLEEEYLKILNLFEDEPDAPFSIHQIVQMGVGEGKAVGSW 166 (409)
T ss_pred CCCcccCcceeeEEehhHHHHHHHHHHhhcccccccccccccchHHHHHHHhhcCCCccccCHHHHHHHHhhccCCCccc
Confidence 99999999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeeC--------CCCCCCCCCceEeccccccccccccCCCCCCccEE
Q 016970 198 VGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSG--------DEDGERGGAPVVCIDDASRHCSVFSKGQADWTPIL 269 (379)
Q Consensus 198 fGPs~~a~~i~~L~~~~~~~~~~~~~~~~l~v~v~s~--------~~dge~~~~~~v~~dd~~~~~~~~~~~~~~w~plL 269 (379)
||||++|+++++|.... .+.+.++|++.+ .+...+++.+.+++.+..++|.+++++..+|+|||
T Consensus 167 fGP~~~a~~~~~L~~~~--------~~~~~~~~v~~~~~vv~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ewkpll 238 (409)
T KOG2674|consen 167 FGPNTVAQVLKKLARFD--------PWSSLAVYVAMDNAVIIRDIVEKCRRGPLPALTIEDATKQSLEFSNGITEWKPLL 238 (409)
T ss_pred cCCcHHHHHHHHhhccC--------CCCCccEEEecccceEEeeeehhcccCCcccceecccchhhcccCCCCCCCcceE
Confidence 99999999999998743 244566666543 23445567778888888888888888899999999
Q ss_pred EEEeeeecCCCCCcchHHHHHHhhCCCceeEEecCCCCceEEEEEEecCceEEeCCCCcccccccCCCCCCCCCCccccC
Q 016970 270 LLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSD 349 (379)
Q Consensus 270 lLiPlRLGld~iNp~Y~~~Lk~~f~lpqsvGIiGGrP~~SlYFvG~q~d~LiYLDPH~~Q~av~~~~~~~~~~~~Syhc~ 349 (379)
||||||||++.|||.|+++||++|++||||||+||||+||+||||||||+|||||||+||++|++++ ...++++||||+
T Consensus 239 LLVPvRLG~~~iNp~Yvp~lk~~f~~~q~lGI~GGkP~~S~YFvGyq~d~l~YLDPH~~Q~~V~vs~-~~~~~~esfHC~ 317 (409)
T KOG2674|consen 239 LLIPLRLGITSINPSYVPALKECFEMPQSVGIIGGRPNHSLYFVGYQGDELFYLDPHYTQPAVEVSK-AKDVPDETFHCQ 317 (409)
T ss_pred EEEEeeecccccChHHHHHHHHHhcchhhceeccCCCCcceEEEEEecceEEEeCCccCcccccccc-cCCCCccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999873 233567899999
Q ss_pred CccccccCCCCcccEEEEEeCChhhhhcc
Q 016970 350 VIRHIHLDSIDPSLAIGFYCRDKGLLVTF 378 (379)
Q Consensus 350 ~~~~m~~~~mDPS~alGFyc~~~~Df~df 378 (379)
.++||++.+|||||||||||++++||++|
T Consensus 318 ~~~km~f~~mDPS~alGF~c~~~~dF~~~ 346 (409)
T KOG2674|consen 318 SLRKMAFEDMDPSLALGFYCKDEDDFDNL 346 (409)
T ss_pred chhhcchhhcCcceEEEEEecCHHHHHHH
Confidence 99999999999999999999999999987
No 2
>PF03416 Peptidase_C54: Peptidase family C54 This family belongs to family C54 of the peptidase classification.; InterPro: IPR005078 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This is a group of cysteine peptidases which constitute MEROPS peptidase family C54 (Aut2 peptidase family, clan CA), which are a group of proteins of unknown function.; PDB: 2CY7_A 2ZZP_A 2D1I_B 2Z0E_A 2Z0D_A 2P82_D.
Probab=100.00 E-value=7.7e-101 Score=743.54 Aligned_cols=269 Identities=47% Similarity=0.882 Sum_probs=208.2
Q ss_pred chHHHHHhcccceEEeecCCCCCCCCCcccccCCccccccchhHHHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHhhcCC
Q 016970 93 GLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGD 172 (379)
Q Consensus 93 ~~~~f~~df~SriWfTYR~~F~pI~~s~~TSD~GWGCMLRsgQMLLAqaL~~~~LGr~wr~~~~~~~~~~~~~IL~lF~D 172 (379)
+.++|++||+||||||||+||+||+++++|||+|||||||||||||||||++|++||+|++......++.+.+||+||.|
T Consensus 2 ~~~~~~~d~~s~iwfTYR~~F~~i~~s~~tSD~GWGCmlRs~QMlLAqaL~~~~lgr~~~~~~~~~~~~~~~~il~~F~D 81 (278)
T PF03416_consen 2 NKEEFLKDFSSRIWFTYRKGFPPIPGSGLTSDCGWGCMLRSGQMLLAQALLRHHLGRDWRWPDNSDNNEEYRRILSLFQD 81 (278)
T ss_dssp THHHHHHHHHCSB---EEESS--TTTTS-SB-TTT-HHHHHHHHHHHHHHHHHHC-TT--TTTTSS--HHHHHHHHTTSS
T ss_pred cHHHHHHHHhhheEEeccCCCCCCCCCCcccCCCcccccchhHHHHHHHHHHHhhcccccccccccCcHHHHHHHHhcCC
Confidence 36899999999999999999999999999999999999999999999999999999999998765667889999999999
Q ss_pred CCCCCcchhHHHHHHHHc-CCCCccccCchHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeeCCCCCCCCCCceEecccc
Q 016970 173 SETSPFSIHNLLQAGKAY-GLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDA 251 (379)
Q Consensus 173 ~~~apFSIH~iv~~G~~~-gk~~GeWfGPs~~a~~i~~L~~~~~~~~~~~~~~~~l~v~v~s~~~dge~~~~~~v~~dd~ 251 (379)
+++||||||||+++|.++ ||+||+||||+++|++|++|++.. ....++|||++++ +++.+|+
T Consensus 82 ~~~apfSIh~i~~~g~~~~g~~~G~W~gPs~~~~~l~~l~~~~--------~~~~l~v~v~~d~---------~i~~~d~ 144 (278)
T PF03416_consen 82 SPSAPFSIHNIVQEGKSEFGKKPGEWFGPSTIAQALKKLVNEA--------DLSGLRVYVSSDG---------TIYYDDV 144 (278)
T ss_dssp STTSTTSHHHHHHHHHTT-T--TTS-B-HHHHHHHHHHHHCC---------TTT--EEEE-BTT---------EEEHHHH
T ss_pred CCCCcchHHHHHHHHHHHcCCCCcccCCHHHHHHHHHHHHHhc--------cccCceEEEeecc---------ccchhHH
Confidence 999999999999999987 999999999999999999999743 3446889998754 6788888
Q ss_pred ccccccc--cCCCCCCccEEEEEeeeecCCCCCcchHHHHHHhhCCCceeEEecCCCCceEEEEEEecCceEEeCCCCcc
Q 016970 252 SRHCSVF--SKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQ 329 (379)
Q Consensus 252 ~~~~~~~--~~~~~~w~plLlLiPlRLGld~iNp~Y~~~Lk~~f~lpqsvGIiGGrP~~SlYFvG~q~d~LiYLDPH~~Q 329 (379)
.+.|... ......|+|||||||+|||+|++||+|++.|+++|++|||||||||||++|+||||+|+|+|||||||+||
T Consensus 145 ~~~~~~~~~~~~~~~~~~vLlliplrLGl~~in~~Y~~~l~~~l~~pq~vGiiGG~p~~a~YfvG~~~d~liYLDPH~~Q 224 (278)
T PF03416_consen 145 EELCSNSNPTKQSSWWKPVLLLIPLRLGLDKINPKYIPSLKSLLSLPQSVGIIGGRPNSALYFVGFQGDQLIYLDPHYVQ 224 (278)
T ss_dssp HHHHCCS-S-----CE--EEEEEEEE-SSSS--GGGHHHHHHHCCSTTEEEEEEEETTEEEEEEEEETTEEEEE---SEE
T ss_pred HHHHhhhccccccccCceEEEEEEeecCCCCCCHHHHHHHHHHhCCcccceeeccCCCceEEEEEEccCeEEEECCCCCe
Confidence 7776421 12345789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCCccccCCccccccCCCCcccEEEEEeCChhhhhcc
Q 016970 330 PVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKGLLVTF 378 (379)
Q Consensus 330 ~av~~~~~~~~~~~~Syhc~~~~~m~~~~mDPS~alGFyc~~~~Df~df 378 (379)
+|++....+.+.+.+||||..+++|++++|||||+|||||+|++||++|
T Consensus 225 ~a~~~~~~~~~~~~~s~h~~~~~~~~~~~lDPS~~lgF~~~~~~d~~~~ 273 (278)
T PF03416_consen 225 PAVDSQNNNFELDDSSYHCSSPRKMPISKLDPSMALGFYCRNEEDFEDF 273 (278)
T ss_dssp E-----TTS-----GGGC-SSSEEEEGGGS-SEEEEEEEESSHHHHHHH
T ss_pred eCCccCCCCCcCCCCceecCCcccCcHhhcCCCEEEEEEECCHHHHHHH
Confidence 9998766555445689999999999999999999999999999999998
No 3
>PF07910 Peptidase_C78: Peptidase family C78; InterPro: IPR012462 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry contains UfSP1 and UfSP2, which are cysteine peptidases required for the processing and activation of Ubiquitin fold modifier 1 (Ufm1, IPR005375 from INTERPRO) and for its release from conjugated cellular proteins. UfSP1 and UfSP2 are 217 aa and 461 aa respectively [, ]. The peptidases belong to MEROPS peptidase family C78, clan CA. The UfSP2 family have an N-terminal extension with one or more zinc finger domains of the C2H2 type (IPR007087 from INTERPRO), which have been shown to be involved in protein:protein interaction. UfSP2 is present in most, if not all, multi-cellular organisms including plants, nematodes, flies, and mammals, whereas UfSP1 is not present in plants and nematodes []. ; PDB: 3OQC_B 2Z84_A.
Probab=98.02 E-value=6.3e-06 Score=78.24 Aligned_cols=32 Identities=28% Similarity=0.333 Sum_probs=22.6
Q ss_pred eEEecCCCCceEEEEEEec-----CceEEeCCCCcccc
Q 016970 299 LGIVGGKPGASTYIVGVQE-----ESAIYLDPHDVQPV 331 (379)
Q Consensus 299 vGIiGGrP~~SlYFvG~q~-----d~LiYLDPH~~Q~a 331 (379)
--++|| ..||.=+||+.- -+|+.||||++-.+
T Consensus 149 Piylqh-~ghS~TIvGie~~~~g~~~LLVlDP~~~~~~ 185 (218)
T PF07910_consen 149 PIYLQH-DGHSRTIVGIERNKDGEVNLLVLDPHYTGSD 185 (218)
T ss_dssp -EEEEE-TTEEEEEEEEEE-TT--EEEEEE-TT--S-S
T ss_pred CeEeCc-cccceEEEEEEECCCCCEEEEEECCCCCCHH
Confidence 446677 999999999975 48999999998764
No 4
>KOG2433 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=0.0004 Score=70.92 Aligned_cols=68 Identities=28% Similarity=0.541 Sum_probs=40.3
Q ss_pred cccCCccccccchhHHHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHhhcCC---CCCCCcchhHHHHHHHHcCCCCcccc
Q 016970 122 TSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGD---SETSPFSIHNLLQAGKAYGLAAGSWV 198 (379)
Q Consensus 122 TSD~GWGCMLRsgQMLLAqaL~~~~LGr~wr~~~~~~~~~~~~~IL~lF~D---~~~apFSIH~iv~~G~~~gk~~GeWf 198 (379)
.-|.||||..||-|-+-.=-.+ -|- + +++. ..+++|-+...| .|. .| +---+|.
T Consensus 403 idD~GWGCAYRSlQTIcSWFil---qGY----T-~~pI-PtHrEiQqaLvdi~DKpA-~F-------------VGSrQWI 459 (577)
T KOG2433|consen 403 IDDSGWGCAYRSLQTICSWFIL---QGY----T-DKPI-PTHREIQQALVDIQDKPA-KF-------------VGSRQWI 459 (577)
T ss_pred cccCCcchhhHhHHHHHHHHHH---cCc----c-CCCC-CcHHHHHHHHHhccCccc-ce-------------eccccee
Confidence 5699999999998876543332 221 1 1111 224444444333 221 11 1123799
Q ss_pred CchHHHHHHHHHHH
Q 016970 199 GPYAMCRSWEALAR 212 (379)
Q Consensus 199 GPs~~a~~i~~L~~ 212 (379)
|-+.+..+|..|++
T Consensus 460 GStEis~vLn~ll~ 473 (577)
T KOG2433|consen 460 GSTEISFVLNELLK 473 (577)
T ss_pred cchhHHHHHHHHhc
Confidence 99999999999886
No 5
>KOG4696 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.46 E-value=0.1 Score=52.03 Aligned_cols=38 Identities=39% Similarity=0.678 Sum_probs=29.1
Q ss_pred EeecCCCCCCCC----CcccccCCccccccchhHHHHHHHHH
Q 016970 107 ISYRKGFDPIGD----SKITSDVGWGCMLRSSQMLVAQALLF 144 (379)
Q Consensus 107 fTYR~~F~pI~~----s~~TSD~GWGCMLRsgQMLLAqaL~~ 144 (379)
...-|||.-|+. ...--|.||||..|+.|||++..|..
T Consensus 173 ~awnkGFDi~~ALH~D~R~~G~K~W~~~~~~~qml~s~gl~~ 214 (393)
T KOG4696|consen 173 SAWNKGFDIIEALHTDVRSLGDKGWGCGYRNFQMLDSEGLAQ 214 (393)
T ss_pred HHHhcccchhhhhcccchhcccccccccchhHHHHHHHHHHh
Confidence 345677876652 23455789999999999999999985
No 6
>KOG4696 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.33 E-value=0.91 Score=45.45 Aligned_cols=22 Identities=41% Similarity=0.786 Sum_probs=19.6
Q ss_pred cccCCccccccchhHHHHHHHH
Q 016970 122 TSDVGWGCMLRSSQMLVAQALL 143 (379)
Q Consensus 122 TSD~GWGCMLRsgQMLLAqaL~ 143 (379)
.=|.||||.-|.+||.+|.-|.
T Consensus 124 ~~d~Gwgcgw~niqmq~shll~ 145 (393)
T KOG4696|consen 124 GIDRGWGCGWRNIQMQISHLLY 145 (393)
T ss_pred ccccccCccccchHHHHHHHHh
Confidence 3489999999999999999775
No 7
>KOG2674 consensus Cysteine protease required for autophagy - Apg4p/Aut2p [Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.12 E-value=0.61 Score=48.27 Aligned_cols=73 Identities=7% Similarity=-0.147 Sum_probs=59.9
Q ss_pred cccccCCccccccchhHHHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHhhcCCCCCCCcchhHHHHHHHHcCCCCccccC
Q 016970 120 KITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVG 199 (379)
Q Consensus 120 ~~TSD~GWGCMLRsgQMLLAqaL~~~~LGr~wr~~~~~~~~~~~~~IL~lF~D~~~apFSIH~iv~~G~~~gk~~GeWfG 199 (379)
.++.+.+|+|+.+|.++|++.+...+ ..|-+||++++.|.+ +...+...+++++.|++
T Consensus 135 il~~F~D~~~a~~SiHq~~~~G~~~~------------------~~~g~WfGP~~~a~~----~~~L~~~~~~~~~~~~v 192 (409)
T KOG2674|consen 135 ILNLFEDEPDAPFSIHQIVQMGVGEG------------------KAVGSWFGPNTVAQV----LKKLARFDPWSSLAVYV 192 (409)
T ss_pred HHHhhcCCCccccCHHHHHHHHhhcc------------------CCCccccCCcHHHHH----HHHhhccCCCCCccEEE
Confidence 68999999999999999999998743 246789999887766 66677778899999999
Q ss_pred chHHHHHHHHHHHHH
Q 016970 200 PYAMCRSWEALARCQ 214 (379)
Q Consensus 200 Ps~~a~~i~~L~~~~ 214 (379)
+-..+.+++......
T Consensus 193 ~~~~~vv~~d~~~~~ 207 (409)
T KOG2674|consen 193 AMDNAVIIRDIVEKC 207 (409)
T ss_pred ecccceEEeeeehhc
Confidence 988888777665543
No 8
>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A.
Probab=49.44 E-value=21 Score=29.45 Aligned_cols=30 Identities=27% Similarity=0.354 Sum_probs=22.3
Q ss_pred ceeEEecCCCCceEEEEEEecCc-eEEeCCC
Q 016970 297 QSLGIVGGKPGASTYIVGVQEES-AIYLDPH 326 (379)
Q Consensus 297 qsvGIiGGrP~~SlYFvG~q~d~-LiYLDPH 326 (379)
..-+.-++...|.+-++||.++. +++.||.
T Consensus 114 ~~~~~~~~~~~H~vvi~Gy~~~~~~~v~DP~ 144 (144)
T PF13529_consen 114 NGDGYDGTYGGHYVVIIGYDEDGYVYVNDPW 144 (144)
T ss_dssp TTEEEEE-TTEEEEEEEEE-SSE-EEEE-TT
T ss_pred CCCCcCCCcCCEEEEEEEEeCCCEEEEeCCC
Confidence 34456677788999999999999 9999995
No 9
>PF15644 Tox-PL: Papain fold toxin 1; PDB: 3B21_A.
Probab=44.91 E-value=20 Score=30.22 Aligned_cols=24 Identities=38% Similarity=0.772 Sum_probs=17.0
Q ss_pred cCCCCceEEEEEEecCceEEeCCCC
Q 016970 303 GGKPGASTYIVGVQEESAIYLDPHD 327 (379)
Q Consensus 303 GGrP~~SlYFvG~q~d~LiYLDPH~ 327 (379)
||.+.|+...+ +++..+.||||=.
T Consensus 84 gg~~gHa~nvv-~~~G~i~~~D~Q~ 107 (111)
T PF15644_consen 84 GGGPGHAFNVV-NQNGKIVFLDPQS 107 (111)
T ss_dssp ----TTEEEEE-EE-SSEEEEBTTT
T ss_pred ccccceEEEEE-eCCCeEEEEeCCC
Confidence 44458999999 9999999999954
No 10
>cd02549 Peptidase_C39A A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=27.16 E-value=1.3e+02 Score=25.12 Aligned_cols=27 Identities=15% Similarity=0.191 Sum_probs=22.5
Q ss_pred ecCCCCceEEEEEEe-cCceEEeCCCCc
Q 016970 302 VGGKPGASTYIVGVQ-EESAIYLDPHDV 328 (379)
Q Consensus 302 iGGrP~~SlYFvG~q-~d~LiYLDPH~~ 328 (379)
.++..+|.+-++|+. ++.+++.||..-
T Consensus 89 ~~~~~gH~vVv~g~~~~~~~~i~DP~~~ 116 (141)
T cd02549 89 SITPSGHAMVVIGYDRKGNVYVNDPGGG 116 (141)
T ss_pred ccCCCCeEEEEEEEcCCCCEEEECCCCC
Confidence 456678899999999 889999999754
No 11
>PF04843 Herpes_teg_N: Herpesvirus tegument protein, N-terminal conserved region; InterPro: IPR006928 Herpesvirus UL36 encodes the largest herpes simplex virus protein, also designated VP1/2, which is a component of the virion tegument. The N-terminal domain, of approximately 500aa, encodes a ubiquitin-specific protease (USP) that belongs to MEROPS peptidase family C76 (UL36 deubiquitinylating peptidase, clan CA). It is conserved across the herpesviridae and accumulates as a cleavage product of UL36 during late viral replication []. The conservation of UL36-USP across all members of the herpesviridae and the absolute conservation of the active site residues imply that UL36-USP plays an important role the herpesvirus life cycle.
Probab=20.40 E-value=2.2e+02 Score=26.18 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=26.1
Q ss_pred hHHHHHHhh-----CCCce-eEEecCCCCceEEEEEEecCceEEeCCCCcc
Q 016970 285 YIPTLRLTF-----TFPQS-LGIVGGKPGASTYIVGVQEESAIYLDPHDVQ 329 (379)
Q Consensus 285 Y~~~Lk~~f-----~lpqs-vGIiGGrP~~SlYFvG~q~d~LiYLDPH~~Q 329 (379)
++..|+.++ .-+|. +=|+|++ .-|+|+- ++..+++|||-.-
T Consensus 106 ~~~~l~~~~~~~~~~~~~y~l~t~g~~-~~av~~~---~~~~yiFDPH~~~ 152 (172)
T PF04843_consen 106 CIGSLDFLLYAWYKRTPQYILVTIGAL-TIAVIRT---GDRYYIFDPHSRD 152 (172)
T ss_pred hhHhHHHHHHHhccCCCcEEEEEECCc-eEEEEEe---CCcEEEECCCCCC
Confidence 455555544 22444 3555555 6667765 9999999999654
Done!