Query 016970
Match_columns 379
No_of_seqs 172 out of 346
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 06:48:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016970.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016970hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p82_A Cysteine protease ATG4A 100.0 2E-110 7E-115 831.7 24.5 290 60-378 15-329 (355)
2 2cy7_A Cysteine protease APG4B 100.0 2E-108 6E-113 827.3 26.9 291 59-378 18-335 (396)
3 3oqc_A UFSP2, UFM1-specific pr 98.1 2.5E-05 8.5E-10 79.4 12.5 46 285-331 394-445 (481)
4 2z84_A UFSP1, UFM1-specific pr 97.9 4.5E-05 1.5E-09 71.0 10.0 27 303-329 144-175 (218)
5 2fu4_A Ferric uptake regulatio 20.6 1.8E+02 0.006 21.2 5.3 49 161-213 17-65 (83)
6 2xzm_O RPS13E; ribosome, trans 18.2 89 0.003 27.3 3.4 27 179-205 123-150 (153)
7 3u5c_N S27A, YS15, 40S ribosom 18.0 87 0.003 27.3 3.3 27 179-205 121-148 (151)
8 1nxi_A Conserved hypothetical 17.0 26 0.0009 29.5 -0.2 8 126-133 117-124 (132)
9 1mzb_A Ferric uptake regulatio 13.8 3.1E+02 0.011 22.2 5.7 49 161-213 18-66 (136)
10 3ijm_A Uncharacterized restric 12.4 31 0.0011 29.8 -1.0 29 94-127 111-139 (151)
No 1
>2p82_A Cysteine protease ATG4A; autophagy, hydrolase, protein transport, thiol Pro transport, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: d.3.1.22
Probab=100.00 E-value=1.9e-110 Score=831.71 Aligned_cols=290 Identities=34% Similarity=0.691 Sum_probs=259.3
Q ss_pred CCCCCCCCCcEEEeCceecCCCcccccccCCCcchHHHHHhcccceEEeecCCCCCCCCCcccccCCccccccchhHHHH
Q 016970 60 RTGISSSTSDIWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVA 139 (379)
Q Consensus 60 ~~~~~~~~~~vwlLG~~Y~~~~~~~~~~~~~~~~~~~f~~df~SriWfTYR~~F~pI~~s~~TSD~GWGCMLRsgQMLLA 139 (379)
+++++++++||||||++|+..++ .++|++||+||||||||+||+||+++++|||+||||||||||||||
T Consensus 15 ~~~~~~~~~pv~iLG~~y~~~~~-----------~~~fl~d~~SriWfTYR~~F~~I~~s~~TSD~GWGCMlRsgQMlLA 83 (355)
T 2p82_A 15 YFQGPDTDELVWILGKQHLLKTE-----------KSKLLSDISARLWFTYRRKFSPIGGTGPSSDAGWGCMLRCGQMMLA 83 (355)
T ss_dssp -------CCEEEETTEEEETTTT-----------HHHHHHHHHTSBCCCEEESSCCTTTTSCSCCTTTCHHHHHHHHHHH
T ss_pred ccccCCCCCeEEEecceecCCcC-----------HHHHHHHhhhcEEEEecCCCccCCCCCccCCCccceeeehhHHHHH
Confidence 45677899999999999998754 6899999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCCCCCCcHHHHHHHhhcCCCCCCCcchhHHHHHHHHcCCCCccccCchHHHHHHHHHHHHHhhhcc
Q 016970 140 QALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETG 219 (379)
Q Consensus 140 qaL~~~~LGr~wr~~~~~~~~~~~~~IL~lF~D~~~apFSIH~iv~~G~~~gk~~GeWfGPs~~a~~i~~L~~~~~~~~~ 219 (379)
|||++|+|||+|||...+..+++|.+||+||+|+|+|||||||||++|.++||+|||||||+++|++|++|++.
T Consensus 84 qaL~~~~LGr~wr~~~~~~~~~~~~~Il~~F~D~~~apfSIH~iv~~g~~~gk~~GeWfGPs~va~~lk~L~~~------ 157 (355)
T 2p82_A 84 QALICRHLGRDWSWEKQKEQPKEYQRILQCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTVAQVLKKLALF------ 157 (355)
T ss_dssp HHHHHHHTCTTCCTTSCSSCCHHHHHHHHTTSSSTTSTTSHHHHHHHHHTTTCCTTCCCCHHHHHHHHHHHHTT------
T ss_pred HHHHHHhcCccccccccccccHHHHHHHHhcCCCCCCCccHHHHHHHHHHcCCCcccccCHHHHHHHHHHHHhc------
Confidence 99999999999999877667789999999999999999999999999999999999999999999999999863
Q ss_pred CCCCCCCeEEEEeeCCCCCCCCCCceEeccccccccccccC------------------------CCCCCccEEEEEeee
Q 016970 220 LGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSK------------------------GQADWTPILLLVPLV 275 (379)
Q Consensus 220 ~~~~~~~l~v~v~s~~~dge~~~~~~v~~dd~~~~~~~~~~------------------------~~~~w~plLlLiPlR 275 (379)
.++.+++|||++++ +++++|+.++|..... ....|+|||||||+|
T Consensus 158 --~~~~~l~v~va~D~---------~v~~~di~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plLlliplR 226 (355)
T 2p82_A 158 --DEWNSLAVYVSMDN---------TVVIEDIKKMCRVLPLSADTAGDRPPDSLTASNQSKGTSAYCSAWKPLLLIVPLR 226 (355)
T ss_dssp --CTTTCCEEEECBTT---------EEEHHHHHHHHEECCSCC----------------------CCCEECCEEEEEEEE
T ss_pred --ccccCceEEEecCC---------cEeHHHHHHHhhcccccccccccccccccccccccccccccccCCceEEEEEEee
Confidence 23457999998753 7888888877754211 012699999999999
Q ss_pred ecCCCCCcchHHHHHHhhCCCceeEEecCCCCceEEEEEEecCceEEeCCCCcccccccCCCCCCCCCCccccCC-cccc
Q 016970 276 LGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDV-IRHI 354 (379)
Q Consensus 276 LGld~iNp~Y~~~Lk~~f~lpqsvGIiGGrP~~SlYFvG~q~d~LiYLDPH~~Q~av~~~~~~~~~~~~Syhc~~-~~~m 354 (379)
||+|+|||+|+++||++|++|||||||||||++|+||||+|+|+|||||||+||+|++..+... .+.+||||+. +++|
T Consensus 227 LGld~in~~Y~~~Lk~~l~~pqsvGIiGGkP~~s~YfvG~q~d~l~YLDPH~~Q~a~~~~~~~~-~~~~sfhc~~~~~~m 305 (355)
T 2p82_A 227 LGINQINPVYVDAFKECFKMPQSLGALGGKPNNAYYFIGFLGDELIFLDPHTTQTFVDTEENGT-VNDQTFHCLQSPQRM 305 (355)
T ss_dssp CCSSSCCGGGHHHHHHHHHSTTEEEEEEEETTEEEEEEEEETTEEEEECCCSEEECCCBCTTSC-BCCGGGBCCSSCEEE
T ss_pred cCCCcCCHHHHHHHHHHhCccccceEecCCCCceEEEEEEcCCEEEEeCCCCCcccccccccCc-CCCCceeeCCCcCcC
Confidence 9999999999999999999999999999999999999999999999999999999998765433 2578999999 9999
Q ss_pred ccCCCCcccEEEEEeCChhhhhcc
Q 016970 355 HLDSIDPSLAIGFYCRDKGLLVTF 378 (379)
Q Consensus 355 ~~~~mDPS~alGFyc~~~~Df~df 378 (379)
++++|||||+|||||+|++||++|
T Consensus 306 ~~~~lDPS~~lGF~c~~~~df~d~ 329 (355)
T 2p82_A 306 NILNLDPSVALGFFCKEEKDFDNW 329 (355)
T ss_dssp EGGGSCSEEEEEEEESSHHHHHHH
T ss_pred chhhcCcceEEEEEECCHHHHHHH
Confidence 999999999999999999999998
No 2
>2cy7_A Cysteine protease APG4B; papain-like fold, autophagy, hydrolase; 1.90A {Homo sapiens} SCOP: d.3.1.22 PDB: 2d1i_A 2zzp_A 2z0d_A 2z0e_A
Probab=100.00 E-value=1.7e-108 Score=827.27 Aligned_cols=291 Identities=34% Similarity=0.684 Sum_probs=258.9
Q ss_pred CCCCCCCCCCcEEEeCceecCCCcccccccCCCcchHHHHHhcccceEEeecCCCCCCCCCcccccCCccccccchhHHH
Q 016970 59 SRTGISSSTSDIWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLV 138 (379)
Q Consensus 59 ~~~~~~~~~~~vwlLG~~Y~~~~~~~~~~~~~~~~~~~f~~df~SriWfTYR~~F~pI~~s~~TSD~GWGCMLRsgQMLL 138 (379)
+..+++.+++||||||++|+..++ .++|++||+||||||||+|||||+++++|||+|||||||||||||
T Consensus 18 ~~~~~~~~~~pv~iLG~~y~~~~~-----------~~~fl~d~~SriWfTYR~~F~~I~~s~~TSD~GWGCMlRsgQMlL 86 (396)
T 2cy7_A 18 EFEDFPETSEPVWILGRKYSIFTE-----------KDEILSDVASRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIF 86 (396)
T ss_dssp CCCCCCCCSSCEEETTEEECTTTC-----------HHHHHHHHHHSBCCCEEESCCCTTTTSCSBCTTTCHHHHHHHHHH
T ss_pred ccccCCCCCCcEEEeCcEecCCcC-----------HHHHHHHhhhcEEEEccCCCcccCCCCCCCCCCccceeeccHHHH
Confidence 457899999999999999998654 579999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCCCCCcHHHHHHHhhcCCCCCCCcchhHHHHHHHHcCCCCccccCchHHHHHHHHHHHHHhhhc
Q 016970 139 AQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAET 218 (379)
Q Consensus 139 AqaL~~~~LGr~wr~~~~~~~~~~~~~IL~lF~D~~~apFSIH~iv~~G~~~gk~~GeWfGPs~~a~~i~~L~~~~~~~~ 218 (379)
||||++|||||+|||++.+..+++|.+||+||+|+|+|||||||||++|.++||+|||||||+++|++|++|++.
T Consensus 87 AqaL~~~~LGrdwr~~~~~~~~~~~~~Il~~F~D~~~apFSIH~iv~~G~~~gk~~GeWfGPs~va~~lk~L~~~----- 161 (396)
T 2cy7_A 87 AQALVCRHLGRDWRWTQRKRQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVF----- 161 (396)
T ss_dssp HHHHHHHHTCTTCCCCTTSCCCHHHHHHHHTTSSSTTSTTCHHHHHHHHHTTTCCTTCCCCHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHhcccccccccccCcHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCcccccCHHHHHHHHHHHhhc-----
Confidence 999999999999999877666778999999999999999999999999999999999999999999999999752
Q ss_pred cCCCCCCCeEEEEeeCCCCCCCCCCceEecccccccccc--------------------cc------CCCCCCccEEEEE
Q 016970 219 GLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSV--------------------FS------KGQADWTPILLLV 272 (379)
Q Consensus 219 ~~~~~~~~l~v~v~s~~~dge~~~~~~v~~dd~~~~~~~--------------------~~------~~~~~w~plLlLi 272 (379)
.++..++|||++++ +|+++|+.+.|.. +. .....|+|+||||
T Consensus 162 ---~~~~~l~v~va~D~---------~v~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~plLlli 229 (396)
T 2cy7_A 162 ---DTWSSLAVHIAMDN---------TVVMEEIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLI 229 (396)
T ss_dssp ---CTTTCCEEEECCTT---------EEEHHHHHHHHBSSCCC---------------------------CCBCCEEEEE
T ss_pred ---ccccCceEEEecCC---------ceeHHHHHHHhhcccccccccccccccccccccccccccccccccCCcceEEEE
Confidence 23456899998753 6777777665542 11 1124699999999
Q ss_pred eeeecCCCCCcchHHHHHHhhCCCceeEEecCCCCceEEEEEEecCceEEeCCCCcccccccCCCCCCCCCCccccCC-c
Q 016970 273 PLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDV-I 351 (379)
Q Consensus 273 PlRLGld~iNp~Y~~~Lk~~f~lpqsvGIiGGrP~~SlYFvG~q~d~LiYLDPH~~Q~av~~~~~~~~~~~~Syhc~~-~ 351 (379)
|+|||+|+|||+|+++||++|++|||+|||||||++|+||||+|+|+|||||||+||+|++...... .+.+||||.. +
T Consensus 230 plRLGld~iNp~Y~~~Lk~~l~~pqsvGIiGGkP~~s~YfvG~q~d~liYLDPH~~Q~a~~~~~~~~-~~~~s~hc~~~~ 308 (396)
T 2cy7_A 230 PLRLGLTDINEAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPTDGCF-IPDESFHCQHPP 308 (396)
T ss_dssp EEECCSSSCCGGGHHHHHHHTSSTTEEEEEECSTTCCEEEEEEETTEEEEECCCSEEECCC---CCC-CCCGGGBCCSCC
T ss_pred EEeecCCcCCHHHHHHHHHHhCCcccceEecCccCceEEEEEEeCCEEEeeCCCccccccccccccc-CCCcceeecCcc
Confidence 9999999999999999999999999999999999999999999999999999999999998654332 2457999998 5
Q ss_pred cccccCCCCcccEEEEEeCChhhhhcc
Q 016970 352 RHIHLDSIDPSLAIGFYCRDKGLLVTF 378 (379)
Q Consensus 352 ~~m~~~~mDPS~alGFyc~~~~Df~df 378 (379)
++|++++|||||+|||||+|++||++|
T Consensus 309 ~~m~~~~mDPS~~lGFyc~~~~Df~d~ 335 (396)
T 2cy7_A 309 CRMSIAELDPSIAVGFFCKTEDDFNDW 335 (396)
T ss_dssp EEEEGGGSCSEEEEEEEESSHHHHHHH
T ss_pred cccchhhcCCceEEEEEECCHHHHHHH
Confidence 899999999999999999999999998
No 3
>3oqc_A UFSP2, UFM1-specific protease 2; DPH motif Cys protease, hydrolase; 2.60A {Mus musculus}
Probab=98.08 E-value=2.5e-05 Score=79.41 Aligned_cols=46 Identities=26% Similarity=0.225 Sum_probs=33.5
Q ss_pred hHHHHHHhhCCCceeEEecCCCCceEEEEEEecC------ceEEeCCCCcccc
Q 016970 285 YIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEE------SAIYLDPHDVQPV 331 (379)
Q Consensus 285 Y~~~Lk~~f~lpqsvGIiGGrP~~SlYFvG~q~d------~LiYLDPH~~Q~a 331 (379)
..+.|.+-|+-.-+-=|+|| ..+|+=++|+.-+ .|+.|||||+-+.
T Consensus 394 l~~~L~~hF~~~GtPImiGG-~~~S~TIlGVe~~~~tG~~~lLIlDPHytg~~ 445 (481)
T 3oqc_A 394 QGRELANHFQNVGTPVMVGG-GVLAHTILGVAWNETTGQIKFLILDPHYTGAE 445 (481)
T ss_dssp GHHHHHHHHTTTCCCEEEEE-TTEEEEEEEEEECTTTCCEEEEEECTTCCSCS
T ss_pred HHHHHHHHHhccCCCEEecC-CCCCceEEEEEEecCCCeEEEEEECCCCCChH
Confidence 34667777766445556666 6799999999732 5799999998644
No 4
>2z84_A UFSP1, UFM1-specific protease 1; alpha/beta, papain like fold, hydrolase, thiol protease, UBL conjugation pathway; 1.70A {Mus musculus}
Probab=97.90 E-value=4.5e-05 Score=71.05 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=22.7
Q ss_pred cCCCCceEEEEEEec-----CceEEeCCCCcc
Q 016970 303 GGKPGASTYIVGVQE-----ESAIYLDPHDVQ 329 (379)
Q Consensus 303 GGrP~~SlYFvG~q~-----d~LiYLDPH~~Q 329 (379)
||...||.=+||+.. -.|+.||||++-
T Consensus 144 G~~~ghS~tIvGve~~~~g~~~lLIlDPhy~~ 175 (218)
T 2z84_A 144 GDADAQSKALLGICEGPGSEVYVLILDPHYWG 175 (218)
T ss_dssp CTTTSCCEEEEEEEECTTCCEEEEEECCCCCS
T ss_pred CCcccccceEEeEEecCCCcEEEEEECCCcCC
Confidence 567899999999962 279999999987
No 5
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=20.63 E-value=1.8e+02 Score=21.18 Aligned_cols=49 Identities=14% Similarity=0.226 Sum_probs=37.6
Q ss_pred HHHHHHHhhcCCCCCCCcchhHHHHHHHHcCCCCccccCchHHHHHHHHHHHH
Q 016970 161 REYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARC 213 (379)
Q Consensus 161 ~~~~~IL~lF~D~~~apFSIH~iv~~G~~~gk~~GeWfGPs~~a~~i~~L~~~ 213 (379)
+....||.++...+..|+|+..|++.-.+.+.. .+++|+-+.|+.|.+.
T Consensus 17 ~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~----is~~TVyR~L~~L~~~ 65 (83)
T 2fu4_A 17 LPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEE----IGLATVYRVLNQFDDA 65 (83)
T ss_dssp HHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCC----CCHhhHHHHHHHHHHC
Confidence 345789999987653589999999977654432 4789999999999874
No 6
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=18.16 E-value=89 Score=27.30 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=23.7
Q ss_pred chhHHHHHHHHcCCCCccc-cCchHHHH
Q 016970 179 SIHNLLQAGKAYGLAAGSW-VGPYAMCR 205 (379)
Q Consensus 179 SIH~iv~~G~~~gk~~GeW-fGPs~~a~ 205 (379)
-||+++..-+.-|+-|.+| |-|.+++.
T Consensus 123 kI~RL~rYYk~~~~LP~~WkY~~~tA~~ 150 (153)
T 2xzm_O 123 RIHRLSRYYKLNQKLPPKWKYNAQTASA 150 (153)
T ss_dssp HHHHHHHHHHHTTSSCTTCCCSSHHHHH
T ss_pred HHHHHHHHHHhcCcCCCCCcCCHHHHHH
Confidence 4899999999999999999 88888764
No 7
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=17.98 E-value=87 Score=27.31 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=23.5
Q ss_pred chhHHHHHHHHcCCCCccc-cCchHHHH
Q 016970 179 SIHNLLQAGKAYGLAAGSW-VGPYAMCR 205 (379)
Q Consensus 179 SIH~iv~~G~~~gk~~GeW-fGPs~~a~ 205 (379)
-||+++..-+.-|+-|.+| |-|.++..
T Consensus 121 kI~RL~rYYk~~~~LP~~WkY~~~tA~~ 148 (151)
T 3u5c_N 121 RIHRLARYYRTVAVLPPNWKYESATASA 148 (151)
T ss_dssp HHHHHHHHHHHTTSSCTTCCCCHHHHHH
T ss_pred HHHHHHHHHHhcCcCCCCCcCCHHHHHH
Confidence 4899999999999999999 88888764
No 8
>1nxi_A Conserved hypothetical protein VC0424; structural genomics, AB sandwich, COG 3076, ATCC NO. 51394D, NESG target OP3, PSI; NMR {Vibrio cholerae} SCOP: d.58.47.1
Probab=16.97 E-value=26 Score=29.52 Aligned_cols=8 Identities=38% Similarity=1.145 Sum_probs=6.5
Q ss_pred Cccccccc
Q 016970 126 GWGCMLRS 133 (379)
Q Consensus 126 GWGCMLRs 133 (379)
|||||+-.
T Consensus 117 GWGt~~~~ 124 (132)
T 1nxi_A 117 GWGTYYEG 124 (132)
T ss_dssp EEEECCCC
T ss_pred CcceEEEc
Confidence 99999754
No 9
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=13.82 E-value=3.1e+02 Score=22.18 Aligned_cols=49 Identities=20% Similarity=0.251 Sum_probs=37.7
Q ss_pred HHHHHHHhhcCCCCCCCcchhHHHHHHHHcCCCCccccCchHHHHHHHHHHHH
Q 016970 161 REYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARC 213 (379)
Q Consensus 161 ~~~~~IL~lF~D~~~apFSIH~iv~~G~~~gk~~GeWfGPs~~a~~i~~L~~~ 213 (379)
+....||..+...+..|+|.-.|.+.-...+.. .+++|+-+.|+.|.+.
T Consensus 18 ~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~----is~aTVYR~L~~L~e~ 66 (136)
T 1mzb_A 18 LPRVKILQMLDSAEQRHMSAEDVYKALMEAGED----VGLATVYRVLTQFEAA 66 (136)
T ss_dssp HHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCC----CCHHHHHHHHHHHHHC
Confidence 335679999987654688999999877655433 5899999999999874
No 10
>3ijm_A Uncharacterized restriction endonuclease-like FOL superfamily protein; DUF820, cyanobacteria, PD(D/E)XK superfamily, structural GEN PSI-2; 1.70A {Spirosoma linguale}
Probab=12.39 E-value=31 Score=29.82 Aligned_cols=29 Identities=21% Similarity=0.543 Sum_probs=21.9
Q ss_pred hHHHHHhcccceEEeecCCCCCCCCCcccccCCc
Q 016970 94 LAEFNQDFSSRILISYRKGFDPIGDSKITSDVGW 127 (379)
Q Consensus 94 ~~~f~~df~SriWfTYR~~F~pI~~s~~TSD~GW 127 (379)
.|.|.-++.+..|+-||++ +.+.++-.-|
T Consensus 111 ~EGFVynYkt~~W~rYr~g-----~gg~~~n~Sf 139 (151)
T 3ijm_A 111 LEGFVFNYKTQQWLRYRLG-----DGGVATNSSF 139 (151)
T ss_dssp CEEEEEETTTTEEEEEETT-----STTCCBSCCE
T ss_pred eeeeeEeeccCceeEEEcC-----CCceeccccH
Confidence 4567778899999999997 4456666555
Done!